RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein
[Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>gnl|CDD|161979 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation.
Length = 460
Score = 444 bits (1143), Expect = e-125
Identities = 197/459 (42%), Positives = 275/459 (59%), Gaps = 14/459 (3%)
Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHS-KHPN 66
+ + I +E VKF+DLRFTD++GK +H+ + S ++ GI FD SSI G+ + +
Sbjct: 3 VFKLIKEENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIRGFQGIEESD 62
Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126
+LL PD T +DP+ A+ T+ IC+VY+P T +PY RDPR A++A +YL++ IGDT
Sbjct: 63 MLLKPDPSTAVIDPWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSG-IGDTA 121
Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTE--FLQNGNNKGYDSHAKSSY-TLPPQDKL 183
G EFF+FD+V S + ++S E + + N+GY K Y + P D
Sbjct: 122 YFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNRGYKPRDKGGYFPVAPTDTA 181
Query: 184 HDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSY 243
D+R E+V L +G + +H+++ QH + ++LL +D++Q YKY V VA +
Sbjct: 182 VDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKH 241
Query: 244 CKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDR-VSLKGLYYLGGIIKHAKSL 302
K ATFMPKP+ NGSGM+ + S+ K + +F G + +S LYY+GGI+KHAK+L
Sbjct: 242 GKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFAGEEGYAGLSETALYYIGGILKHAKAL 301
Query: 303 NALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
A TN + NSYKRL+ ++P L YS N SA RIP K IE RFPD SANPY
Sbjct: 302 AAFTNPTVNSYKRLVPGYEAPVYLAYSARNRSALIRIPASGNPKAKRIEFRFPDPSANPY 361
Query: 363 LAPAAILMAGLDGIAKKIHPG----KNIDELSLEE--QNTIPRICISLRESLENLDKDRE 416
LA AA+LMAGLDGI KI PG KN+ ELS EE + IP++ SL E+L+ L+ D
Sbjct: 362 LAFAAMLMAGLDGIKNKIDPGEPVDKNLYELSPEELREKGIPQLPGSLEEALDELESDH- 420
Query: 417 FLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455
L G VF ++ I+AFI LK KE P P EFE+Y
Sbjct: 421 -LVEGGVFGEEFIEAFIELKRKEWDPYRLRPHPWEFELY 458
>gnl|CDD|181884 PRK09469, glnA, glutamine synthetase; Provisional.
Length = 469
Score = 439 bits (1130), Expect = e-123
Identities = 202/467 (43%), Positives = 291/467 (62%), Gaps = 13/467 (2%)
Query: 5 ATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHS-K 63
A ++ + + +VKF+DLRFTD +GK +H+++ N + G FD SSI GW
Sbjct: 3 AEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGIN 62
Query: 64 HPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIG 123
+++L+PD T +DPF+ ST+ C++ +P T+Q Y+RDPR A++A DYL++T I
Sbjct: 63 ESDMVLMPDASTAVLDPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLRSTGIA 122
Query: 124 DTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN------GNNKGYDSHAKSSY-T 176
DT+L G EFF+FD++ S S A++ E N G NKG+ K Y
Sbjct: 123 DTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEAAWNSGTKYEGGNKGHRPGVKGGYFP 182
Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDA-QHSFGLQSESLLHASDNLQKYKYS 235
+PP D D+RS + + +G+ + +H+++ A Q+ + ++ +D +Q YKY
Sbjct: 183 VPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYV 242
Query: 236 VHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGI 295
VH VA+++ K ATFMPKP+ NGSGM+ +MS+ K +F G+++ +S + LYY+GGI
Sbjct: 243 VHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGI 302
Query: 296 IKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFP 355
IKHAK++NAL N +TNSYKRL+ ++P L YS N SAS RIP + IE+RFP
Sbjct: 303 IKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFP 362
Query: 356 DLSANPYLAPAAILMAGLDGIAKKIHPG----KNIDELSLEEQNTIPRICISLRESLENL 411
D +ANPYL AA+LMAGLDGI KIHPG KN+ +L EE IP++ SL E+L L
Sbjct: 363 DPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAAEIPQVAGSLEEALNAL 422
Query: 412 DKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
D DREFL G VF DD IDA+I L+ +EV ++ +P PVEFE+Y S+
Sbjct: 423 DADREFLTAGGVFTDDAIDAYIALRREEVDRVRMTPHPVEFELYYSV 469
>gnl|CDD|163137 TIGR03105, gln_synth_III, glutamine synthetase, type III. This
family consists of the type III isozyme of glutamine
synthetase, originally described in Rhizobium meliloti,
where types I and II also occur.
Length = 435
Score = 176 bits (449), Expect = 9e-45
Identities = 122/470 (25%), Positives = 210/470 (44%), Gaps = 62/470 (13%)
Query: 10 QKIAQEK-VKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSID--GWHSKHPN 66
Q +A++K +K+ F DL G + + ++ G F + G P+
Sbjct: 2 QALARDKGIKYFLASFVDLHGVQKAKLVPAEAI-DHMATGGAGFAGFAAWGLGQSPADPD 60
Query: 67 LLLIPDIETMHMDPFYAQSTVAFI-CNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDT 125
L+ IPD++++ P+ Q VA++ +++ + +PY + PR ++ + + ++G T
Sbjct: 61 LMAIPDLDSLTQLPW--QPGVAWVAADLH--VNGKPYPQAPRVVLKRQLA--EAAELGLT 114
Query: 126 LLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNK-----GYDSHAKSSYTLPPQ 180
L G+ EFF+ ++ + D+ AK Y
Sbjct: 115 LNTGVECEFFLLR---------------------RDEDGSLSIADRADTLAKPCYDQRGL 153
Query: 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDA--QHSFGLQSESLLHASDNLQKYKYSVHQ 238
+ +D+ +EI A+N +G Y N DA Q L +D ++Y V +
Sbjct: 154 MRRYDVLTEISDAMNALGWDP--YQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKE 211
Query: 239 VANSYCKIATFMPKPIASHNGSGMYLNMSIHKGE-KAIFTGNQHDR---VSLKGLYYLGG 294
+A + ATFMPKP A G+G + ++S+ + + +F + +S +++GG
Sbjct: 212 IAEKHGMRATFMPKPFADLTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGG 271
Query: 295 IIKHAKSLNALTNASTNSYKRLL------TDSQSPTKLTYSTHNHSASCRIPYENKSDNK 348
I+ HA +L A+ + NSYKRL + +P ++Y +N + RIP D
Sbjct: 272 ILHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAPNFISYGGNNRTHMVRIP-----DPG 326
Query: 349 SIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQ---NTIPRICISLR 405
E+R D +ANPYLA AAIL AGLDGI +K+ PG D E+ + + +L
Sbjct: 327 RFELRLADGAANPYLAQAAILAAGLDGIERKLDPGPPRDINLYAEELAARGVETLPQNLL 386
Query: 406 ESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455
E+L L+ D L + +D F+ LK +E + S E + Y
Sbjct: 387 EALRALEAD-PLLA--EALGAEFVDEFLKLKRQEWEEYHRHVSDWEIDRY 433
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 30.4 bits (69), Expect = 0.91
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 223 LHASDNLQKYKYSVHQVANSYCKIATFMPKPIASH-NGSGMYLNMS 267
+ A D L +Y + ++ + +F PKPI NG+G + N S
Sbjct: 208 ISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYS 253
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 30.1 bits (68), Expect = 1.1
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 355 PDLSANPYLAPAAILMAGLDGIAKKIHPG 383
P +A YL PAAIL A A IHPG
Sbjct: 56 PSHAAKSYLNPAAILAAARQCGADAIHPG 84
>gnl|CDD|178344 PLN02743, PLN02743, nicotinamidase.
Length = 239
Score = 28.9 bits (65), Expect = 2.4
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 24/88 (27%)
Query: 114 IDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGF--ALESTEFLQNGNNKGYDSHA 171
+D++ I L++GI T+ V D V +S G LE S
Sbjct: 143 VDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGILPPLEDVVVY---------SRG 193
Query: 172 KSSYTLP-------------PQDKLHDM 186
++Y LP PQ+ +H M
Sbjct: 194 CATYDLPLHVAKTIKGALAHPQELMHHM 221
>gnl|CDD|180380 PRK06066, PRK06066, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 28.6 bits (64), Expect = 3.4
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 46 LLNGITFDSSSIDGWHSKHPNLLLIPDIETMHMDPFY 82
+N + ++ HSK ++L D+ MDP Y
Sbjct: 98 HINSGLANVVVVEA-HSKPSDILTFSDVVKFAMDPIY 133
>gnl|CDD|184618 PRK14318, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 28.4 bits (64), Expect = 4.1
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 412 DKDREFLKV---GNVFDDDQIDAFINLKMKEVLKLESS 446
D DR L V GNV D DQI A + L MKE +L S
Sbjct: 244 DADR-CLAVDANGNVVDGDQIMAILALAMKEAGELASD 280
>gnl|CDD|178862 PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.
Length = 172
Score = 27.8 bits (63), Expect = 6.6
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 413 KDREFLKV------GNVFDDDQIDAFINLKMKEVL 441
KD + L++ G V D +++ A L +E L
Sbjct: 99 KDNKKLEIKGGAIEGKVLDAEEVKALAKLPSREEL 133
>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
Length = 312
Score = 27.6 bits (62), Expect = 6.7
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 48 NGITFDSSSIDGWHSK---HPNLLLIPDIETMHM 78
N I+ +++ I G S ++L++PD+E +M
Sbjct: 223 NAISPEAARIKGIVSPVAGDADILVVPDLEAGNM 256
>gnl|CDD|150413 pfam09735, Nckap1, Membrane-associated apoptosis protein.
Expression of this protein was found to be markedly
reduced in patients with Alzheimer's disease. It is
involved in the regulation of actin polymerisation in
the brain as part of a WAVE2 signalling complex.
Length = 1118
Score = 27.0 bits (60), Expect = 9.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 166 GYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSF 215
G++S+ K+ +L DKLH +E+ SALN + I +H+F
Sbjct: 657 GHESYRKNRSSLTMLDKLHLRLTELCSALN--------HMEPICVWEHTF 698
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,138,309
Number of extensions: 442782
Number of successful extensions: 810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 13
Length of query: 458
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,898,497
Effective search space: 1407357417
Effective search space used: 1407357417
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)