RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (458 letters)



>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
           typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
           1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
          Length = 468

 Score =  424 bits (1092), Expect = e-119
 Identities = 202/464 (43%), Positives = 291/464 (62%), Gaps = 13/464 (2%)

Query: 8   IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66
           ++  + + +VKF+DLRFTD +GK +H+++     N      G  FD SSI GW   +  +
Sbjct: 5   VLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESD 64

Query: 67  LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126
           ++L+PD  T  +DPF+A ST+   C++ +P TLQ Y+RDPR  A++A DYL+ T I DT+
Sbjct: 65  MVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTV 124

Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN------GNNKGYDSHAKSSY-TLPP 179
           L G   EFF+FD++    S   S  A++  E   N      G NKG+    K  Y  +PP
Sbjct: 125 LFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYFPVPP 184

Query: 180 QDKLHDMRSEIVSALNNIGVQITKYHNQINDA-QHSFGLQSESLLHASDNLQKYKYSVHQ 238
            D   D+RSE+   +  +G+ +  +H+++  A Q+    +  ++   +D +Q YKY VH 
Sbjct: 185 VDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHN 244

Query: 239 VANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKH 298
           VA+ + K ATFMPKP+   NGSGM+ +MS+ K    +F+G+++  +S + LYY+GG+IKH
Sbjct: 245 VAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKH 304

Query: 299 AKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLS 358
           AK++NAL N +TNSYKRL+   ++P  L YS  N SAS RIP       + IE+RFPD +
Sbjct: 305 AKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPA 364

Query: 359 ANPYLAPAAILMAGLDGIAKKIHPG----KNIDELSLEEQNTIPRICISLRESLENLDKD 414
           ANPYL  AA+LMAGLDGI  KIHPG    KN+ +L  EE   IP++  SL E+L  LD D
Sbjct: 365 ANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNALDLD 424

Query: 415 REFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
           REFLK G VF D+ IDA+I L+ +E  ++  +P PVEFE+Y S+
Sbjct: 425 REFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 468


>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
           ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
           d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A*
          Length = 486

 Score =  319 bits (818), Expect = 8e-88
 Identities = 174/470 (37%), Positives = 261/470 (55%), Gaps = 19/470 (4%)

Query: 8   IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66
           + +    EKV+++D+RF DL G  +H ++  S F+++   +G+ FD SSI G+ S H  +
Sbjct: 17  VFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESD 76

Query: 67  LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126
           +LL+PD ET  +DPF A  T+     V+DP TL+PY+RDPR  A+KA +YL +T I DT 
Sbjct: 77  MLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTA 136

Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN---------NKGYDSHAKSSY-T 176
             G   EF++FD+V        S + +++     N           N+GY    K  Y  
Sbjct: 137 YFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGYFP 196

Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQIND-AQHSFGLQSESLLHASDNLQKYKYS 235
           + P D+  D+R ++++ L N G  + K H+++    Q     Q  SLLHA+D++Q YKY 
Sbjct: 197 VAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYI 256

Query: 236 VHQVANSYCKIATFMPKPIASHNGSGMYLNMSI-HKGEKAIFTGNQHDRVSLKGLYYLGG 294
           +   A    K  TFMPKP+   NGSGM+ + S+   G   ++    +  +S    +Y+GG
Sbjct: 257 IKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGG 316

Query: 295 IIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKS-IEIR 353
           ++ HA SL A TN + NSYKRL+   ++P  L YS  N SA  RIP    +     +E R
Sbjct: 317 LLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRLEFR 376

Query: 354 FPDLSANPYLAPAAILMAGLDGIAKKIHPGK----NIDELSLEEQNTIPRICISLRESLE 409
            PD S NPYLA +A+LMAGLDGI  KI P      ++ EL  EE  +IP+    L + ++
Sbjct: 377 SPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLSDVID 436

Query: 410 NLDKDREFLKVGNVFDDDQIDAFINLKMK-EVLKLESSPSPVEFEMYCSI 458
            L+ D E+L  G VF +D I+ +I+ K + E+  +   P P EF +Y  +
Sbjct: 437 RLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 486


>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
           musculus}
          Length = 421

 Score =  238 bits (609), Expect = 2e-63
 Identities = 75/454 (16%), Positives = 121/454 (26%), Gaps = 39/454 (8%)

Query: 5   ATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH 64
           A  ++  + +    F+    TD  G  R  S+    F +     G   D     G     
Sbjct: 2   AEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAA 61

Query: 65  -PNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIG 123
             +++L+P++ T              IC+             PRY A+ A+  LQ     
Sbjct: 62  ASDIVLMPELSTXXXXXXXXXXXXXVICD-----GGXXXXXSPRYIARAALAQLQAAGAA 116

Query: 124 DTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKL 183
             LL     +F +F                               +    S+        
Sbjct: 117 AGLLSAFIADFCIFGVPE-------------------------VINSKTISFPASTTAAA 151

Query: 184 HDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSES-LLHASDNLQKYKYSVHQVANS 242
            D   E  +     G                     E+    A+DN    +  + +VA  
Sbjct: 152 ADQPQEAAA-GGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARR 210

Query: 243 YCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSL 302
           Y                   +    +       F G    R +L G  +L G        
Sbjct: 211 YNAXXXXXXXXXXXXXXXXSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGXXXXXXXX 270

Query: 303 NALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
                                    +       +  I          IE +    +ANPY
Sbjct: 271 XXXXXXXXXXXXXXXXXXXXXXXTAWGXXXXXCALNIXXXXXXKGAQIENKAGAAAANPY 330

Query: 363 LAPAAILMAGLDGIAKKIHPGKNIDE-LSLEEQNTIPRICISLRESLENLDKDREFLKVG 421
           L  AA + AGLDGI                   + IP     + ++L  L++D E LK  
Sbjct: 331 LVLAATVAAGLDGIQSAGAAAGAAAADXXXXXPSEIPG---KMEDALAALEQDAECLK-- 385

Query: 422 NVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455
               +  I A +     E+   E+     +F  Y
Sbjct: 386 AGLGEAFIRAAVAAAKYELENEETDAEGNKFLEY 419


>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
           genomics, structural genomics consortium, SGC; HET: ADP;
           2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
          Length = 384

 Score =  152 bits (384), Expect = 2e-37
 Identities = 70/367 (19%), Positives = 124/367 (33%), Gaps = 38/367 (10%)

Query: 15  EKVK----FIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLI 70
           EKV+    +ID     L+ K R +        E    N   FD SS       + ++ L+
Sbjct: 43  EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWN---FDGSSTLQSEGSNSDMYLV 99

Query: 71  PDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGI 130
           P    M  DPF        +C V+     +P   + R+T ++ +D +             
Sbjct: 100 PA--AMFRDPFRKDPNKLVLCEVFKYNR-RPAETNLRHTCKRIMDMVSN----------- 145

Query: 131 TTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEI 190
                   +    +    +    +   F    N                +    D+    
Sbjct: 146 -------QHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAH 198

Query: 191 VSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250
             A    GV+I   + ++  AQ  F +     +   D+L   ++ +H+V   +  IATF 
Sbjct: 199 YRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFD 258

Query: 251 PKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAST 310
           PKPI   N +G   + +          G ++               +H   + A      
Sbjct: 259 PKPI-PGNWNGAGCHTNFSTKAMREENGLKYI-----EEAIEKLSKRHQYHIRAYDPKGG 312

Query: 311 -NSYKRLLTDSQSPTKLTYS--THNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPA 366
            ++ +RL    ++     +S    N SAS RIP     + K   E R P  + +P+    
Sbjct: 313 LDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTE 372

Query: 367 AILMAGL 373
           A++   L
Sbjct: 373 ALIRTCL 379


>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
           cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
           {Saccharomyces cerevisiae}
          Length = 370

 Score =  150 bits (378), Expect = 8e-37
 Identities = 66/376 (17%), Positives = 131/376 (34%), Gaps = 36/376 (9%)

Query: 16  KVKFIDLRFT-DLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLIPDIE 74
             +++ +  T +L+ K R +   ++  ++    N   FD SS +       ++ L P   
Sbjct: 25  IAEYVWIDGTGNLRSKGRTLKKRITSIDQLPEWN---FDGSSTNQAPGHDSDIYLKPV-- 79

Query: 75  TMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEF 134
             + DPF     +  +   Y+     P   + R+ A K           + +  G+  E+
Sbjct: 80  AYYPDPFRRGDNIVVLAACYNNDG-TPNKFNHRHEAAKLFAAH----KDEEIWFGLEQEY 134

Query: 135 FVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSAL 194
            +FD         K G+               Y     +           DM      A 
Sbjct: 135 TLFDMYDDVYGWPKGGY---------PAPQGPYYCGVGAGKVYA-----RDMIEAHYRAC 180

Query: 195 NNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPI 254
              G++I+  + ++  +Q  F +   + +   D L   +Y +H+VA  +    +F PKP+
Sbjct: 181 LYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPL 240

Query: 255 -ASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSY 313
               NG+G + N+S  +  +    G ++   +++       + K       L  +  +  
Sbjct: 241 KGDWNGAGCHANVSTKEMRQ--PGGTKYIEQAIEK------LSKRHAEHIKLYGSDNDMR 292

Query: 314 KRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPAAILMAG 372
                ++ S T  +    N  +S RIP     +     E R P  + +PYL    +    
Sbjct: 293 LTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETV 352

Query: 373 LDGIAKKIHPGKNIDE 388
              I       K  + 
Sbjct: 353 CGAI-DNADMTKEFER 367


>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
           2d3b_A* 2d3c_A*
          Length = 356

 Score =  144 bits (363), Expect = 4e-35
 Identities = 67/367 (18%), Positives = 129/367 (35%), Gaps = 36/367 (9%)

Query: 11  KIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLI 70
           KI  E + +I     DL+ K R +   V+  ++   L    +D SS      +   ++L 
Sbjct: 18  KIIAEYI-WIGGSGMDLRSKARTLPGPVTDPSK---LPKWNYDGSSTGQAPGEDSEVILY 73

Query: 71  PDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGI 130
           P    +  DPF   + +  +C+ Y P   +P   + RY+A K     +     +    GI
Sbjct: 74  PQ--AIFKDPFRRGNNILVMCDCYTPAG-EPIPTNKRYSAAKIFSSPE--VAAEEPWYGI 128

Query: 131 TTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEI 190
             E+ +             G+ +      Q     G  +          +    D+    
Sbjct: 129 EQEYTLLQKDT----NWPLGWPIGGFPGPQGPYYCGIGAE---------KSFGRDIVDAH 175

Query: 191 VSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250
             A    G+ I+  + ++   Q  F +     + + D +   +Y + ++      + TF 
Sbjct: 176 YKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFD 235

Query: 251 PKP-IASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAS 309
           PKP     NG+G + N S     K                      ++H + + A     
Sbjct: 236 PKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKA-------AIEKLKLRHKEHIAAYGE-- 286

Query: 310 TNSYKRLLTDSQSPT--KLTYSTHNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPA 366
             + +RL    ++      ++   N  AS R+  E + + K   E R P  + +PY+  +
Sbjct: 287 -GNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTS 345

Query: 367 AILMAGL 373
            I    +
Sbjct: 346 MIAETTI 352


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 91/512 (17%), Positives = 162/512 (31%), Gaps = 192/512 (37%)

Query: 3   DKATSIIQKIAQEKVKFI----DLRFTDLQGKFRHISMNVSL--FNENTLLNGITFDSSS 56
           D+ T+  + +     KF+     L      G+F  + +N+ L  F EN  L G     + 
Sbjct: 52  DEPTTPAELVG----KFLGYVSSLVEPSKVGQFDQV-LNLCLTEF-ENCYLEG-----ND 100

Query: 57  IDGWHSKHPNLL--LIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAI 114
           I   H+    L   L+ + +T              +   Y              TA+   
Sbjct: 101 I---HA----LAAKLLQENDT-------TLVKTKELIKNY-------------ITARIMA 133

Query: 115 DYLQTTDIGDTLLL-----------------GITTEFFVFD---NVHCTISPIKSGFALE 154
                    ++ L                  G T ++F  +   +++ T   +       
Sbjct: 134 K-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKF 190

Query: 155 STEFLQN------------GNNKGYDSHA--KSSYTLPPQDKLHDMRSEIVSA-----LN 195
           S E L                 +G +     ++    P +D L       +S      L 
Sbjct: 191 SAETLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYL-------LSIPISCPL- 240

Query: 196 NIG-VQITKY----HN------QIND-----AQHSFGLQSESLLHASDNLQKYKYSVHQV 239
            IG +Q+  Y            ++         HS GL +   +  +D+ + +  SV + 
Sbjct: 241 -IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299

Query: 240 AN------SYCKIA---TFMPKPIASH----NGSG----MYL---NMSIHKGEKAIFTGN 279
                     C  A   T +P P        N  G    M L   N++  + +  +   N
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTN 357

Query: 280 QH----DRVSLKGL------YYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYS 329
            H     +V +  L        + G     +SL  L     N     L  +++P+ L  S
Sbjct: 358 SHLPAGKQVEI-SLVNGAKNLVVSG---PPQSLYGL-----NLT---LRKAKAPSGLDQS 405

Query: 330 THNHSASCRIPYENKSDNK-SIEIRFPDLSA---NPYLAPAA-ILMAGL--DGI---AK- 378
                   RIP+   S+ K     RF  +++   +  L PA+ ++   L  + +   AK 
Sbjct: 406 --------RIPF---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454

Query: 379 -KI-----HPGKNIDELSLEEQNTIPRI--CI 402
            +I       G ++  LS    +   RI  CI
Sbjct: 455 IQIPVYDTFDGSDLRVLS---GSISERIVDCI 483



 Score = 39.5 bits (92), Expect = 0.001
 Identities = 78/447 (17%), Positives = 126/447 (28%), Gaps = 192/447 (42%)

Query: 68  LLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLL 127
           LL+P           +Q    F         L      P  T   A D   TT     L+
Sbjct: 20  LLVPT--ASF--FIASQLQEQFNK------IL------PEPTEGFAADDEPTTPAE--LV 61

Query: 128 LGITTEF--FVFDNVHCTISPIKSGFALES---------TEFLQNGNNKGYDSHAKSSYT 176
                +F  +V   V     P K G   +            +L+ GN    D HA ++  
Sbjct: 62  G----KFLGYVSSLVE----PSKVGQFDQVLNLCLTEFENCYLE-GN----DIHALAAKL 108

Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLL--HASDNLQKYKY 234
           L   D       E++            Y      A+  F  +S S L     +       
Sbjct: 109 LQENDTTLVKTKELIKN----------YITARIMAKRPFDKKSNSALFRAVGEG------ 152

Query: 235 SVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIF--TGNQHDRVS-LKGLY- 290
                                         N  +     AIF   GN  D    L+ LY 
Sbjct: 153 ------------------------------NAQLV----AIFGGQGNTDDYFEELRDLYQ 178

Query: 291 -Y---LGGIIKH-AKSLNALTNASTNSYKRL---------LTDSQS-PTK---------- 325
            Y   +G +IK  A++L+ L   + ++ K           L +  + P K          
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238

Query: 326 ----LTYSTHNHSASCRI----P--------------------------------YENKS 345
               +    H +  + ++    P                                + +  
Sbjct: 239 PLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV- 296

Query: 346 DNKSIEI------R----FPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE-Q 394
             K+I +      R    +P+ S    L P+ IL   L+       P  +I  L+ E+ Q
Sbjct: 297 -RKAITVLFFIGVRCYEAYPNTS----LPPS-ILEDSLENNEGVPSPMLSISNLTQEQVQ 350

Query: 395 NTI-------P---RICISLRESLENL 411
           + +       P   ++ ISL    +NL
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNL 377



 Score = 29.5 bits (66), Expect = 1.7
 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 89/251 (35%)

Query: 264  LNMSIHKGEKAIFTGNQHDRV--SLKGLYY---LGGIIKHAKSLNALTNASTN----SYK 314
            +N++IH      F G +  R+  +   + +   + G +K  K    +   ST+    S K
Sbjct: 1670 VNLTIH------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723

Query: 315  RLLTDSQ----------------------SPTKLTYSTHN---HSASCRIPYENKSDNKS 349
             LL+ +Q                       P   T++ H+   ++A   +     +D  S
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-----ADVMS 1778

Query: 350  IE--------------IRFP--DLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE 393
            IE              +  P  +L  + Y         G+  IA  I+PG+     S E 
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNY---------GM--IA--INPGRVAASFSQEA 1825

Query: 394  -QNTIPRICIS---LRE----SLENLDKDREFLKVGNVFDDDQIDA---FINLKMKEVLK 442
             Q  + R+      L E    ++EN    ++++  G++   D +     FI L+  ++++
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVEN----QQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881

Query: 443  LESSPSPVEFE 453
            L+ S S  E E
Sbjct: 1882 LQKSLSLEEVE 1892


>1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET:
           NAG; 1.90A {Tick-borne encephalitis virus} SCOP:
           b.1.18.4 f.10.1.1 PDB: 1k4r_A 1na4_A 1n6g_A* 1urz_A
           1z3r_A 2gg1_A 1z66_A
          Length = 395

 Score = 30.1 bits (68), Expect = 1.0
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
           ++KR  TDS   T   ++T+S    +  CRIP    +           ++ NP 
Sbjct: 313 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 363


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 12/35 (34%)

Query: 297 KHA-KSLNALTNASTNSYKRLLTDSQSPT---KLT 327
           K A K L A       S K L  D  +P    K T
Sbjct: 19  KQALKKLQA-------SLK-LYADDSAPALAIKAT 45



 Score = 28.4 bits (62), Expect = 3.7
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 19/38 (50%)

Query: 414 DREFLKVGNVFDDDQIDAFINLKMKEVLKL---ESSPS 448
           +++ LK                K++  LKL   +S+P+
Sbjct: 18  EKQALK----------------KLQASLKLYADDSAPA 39


>1k3p_A Type II citrate synthase; lyase; 2.20A {Escherichia coli} SCOP:
           a.103.1.1 PDB: 1owb_A* 1owc_A 1nxe_A 1nxg_A*
          Length = 426

 Score = 28.5 bits (63), Expect = 2.9
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 357 LSANPYLAPAAILMAGLDGIAKKIHPGKNIDELS-LEEQNTIPRICISLRESLENLDKDR 415
            + +    P A + AG+  +    H G N   L  LEE +++  I    R + +  D  R
Sbjct: 240 TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFR 299

Query: 416 EFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
                  V+ +    A +  +    +  E        E+   +
Sbjct: 300 LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMEL 342


>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural
           genomics, PSI, protein structure initiative; 1.60A
           {Enterococcus faecalis} SCOP: a.4.5.28
          Length = 144

 Score = 28.3 bits (63), Expect = 3.2
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 386 IDELSLEEQNTIPRICISLRESLENLDKDREFLKVG 421
           +  LS  E + +      L    +N+ +D EF+K G
Sbjct: 112 LQGLSEVEISQLADY---LVRMRKNVSEDWEFVKKG 144


>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
           enzyme, substrate channeling, amidotransferase,
           flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
           {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
           1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
          Length = 1520

 Score = 28.3 bits (63), Expect = 3.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 360 NPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE 393
            PYLA  ++    LD   +K+     +D + L  
Sbjct: 665 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPT 698


>2jqm_A Envelope protein E; yellow fever envelope protein domain III, asibi
           strain, structure, transferase; NMR {Yellow fever virus}
           PDB: 2jv6_A
          Length = 112

 Score = 27.8 bits (62), Expect = 4.8
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362
           S+ +  TD+   T   ++        A C+IP     D  +   +   ++ NP 
Sbjct: 19  SFVKNPTDTGHGTVVMQVKVPK---GAPCKIPVIVADDLTAAINKGILVTVNPI 69


>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase,
           lipid metabolism, secreted; HET: PLM; 1.40A {Pseudomonas
           aeruginosa} PDB: 2zxc_A*
          Length = 646

 Score = 27.3 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 91  CNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFV 136
           C     I     N+ P Y     +  +Q   IG   LLG   EF V
Sbjct: 370 CQAEKTILADTGNKKP-YPWTPTVLPIQMFRIGQLELLGAPAEFTV 414


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,741,057
Number of extensions: 166969
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 22
Length of query: 458
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 362
Effective length of database: 3,365,806
Effective search space: 1218421772
Effective search space used: 1218421772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)