RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (458 letters) >1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468 Score = 424 bits (1092), Expect = e-119 Identities = 202/464 (43%), Positives = 291/464 (62%), Gaps = 13/464 (2%) Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66 ++ + + +VKF+DLRFTD +GK +H+++ N G FD SSI GW + + Sbjct: 5 VLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESD 64 Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126 ++L+PD T +DPF+A ST+ C++ +P TLQ Y+RDPR A++A DYL+ T I DT+ Sbjct: 65 MVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTV 124 Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN------GNNKGYDSHAKSSY-TLPP 179 L G EFF+FD++ S S A++ E N G NKG+ K Y +PP Sbjct: 125 LFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYFPVPP 184 Query: 180 QDKLHDMRSEIVSALNNIGVQITKYHNQINDA-QHSFGLQSESLLHASDNLQKYKYSVHQ 238 D D+RSE+ + +G+ + +H+++ A Q+ + ++ +D +Q YKY VH Sbjct: 185 VDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHN 244 Query: 239 VANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKH 298 VA+ + K ATFMPKP+ NGSGM+ +MS+ K +F+G+++ +S + LYY+GG+IKH Sbjct: 245 VAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKH 304 Query: 299 AKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLS 358 AK++NAL N +TNSYKRL+ ++P L YS N SAS RIP + IE+RFPD + Sbjct: 305 AKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPA 364 Query: 359 ANPYLAPAAILMAGLDGIAKKIHPG----KNIDELSLEEQNTIPRICISLRESLENLDKD 414 ANPYL AA+LMAGLDGI KIHPG KN+ +L EE IP++ SL E+L LD D Sbjct: 365 ANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNALDLD 424 Query: 415 REFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 REFLK G VF D+ IDA+I L+ +E ++ +P PVEFE+Y S+ Sbjct: 425 REFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 468 >2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A* Length = 486 Score = 319 bits (818), Expect = 8e-88 Identities = 174/470 (37%), Positives = 261/470 (55%), Gaps = 19/470 (4%) Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH-PN 66 + + EKV+++D+RF DL G +H ++ S F+++ +G+ FD SSI G+ S H + Sbjct: 17 VFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESD 76 Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTL 126 +LL+PD ET +DPF A T+ V+DP TL+PY+RDPR A+KA +YL +T I DT Sbjct: 77 MLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTA 136 Query: 127 LLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN---------NKGYDSHAKSSY-T 176 G EF++FD+V S + +++ N N+GY K Y Sbjct: 137 YFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGYFP 196 Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQIND-AQHSFGLQSESLLHASDNLQKYKYS 235 + P D+ D+R ++++ L N G + K H+++ Q Q SLLHA+D++Q YKY Sbjct: 197 VAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYI 256 Query: 236 VHQVANSYCKIATFMPKPIASHNGSGMYLNMSI-HKGEKAIFTGNQHDRVSLKGLYYLGG 294 + A K TFMPKP+ NGSGM+ + S+ G ++ + +S +Y+GG Sbjct: 257 IKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGG 316 Query: 295 IIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKS-IEIR 353 ++ HA SL A TN + NSYKRL+ ++P L YS N SA RIP + +E R Sbjct: 317 LLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRLEFR 376 Query: 354 FPDLSANPYLAPAAILMAGLDGIAKKIHPGK----NIDELSLEEQNTIPRICISLRESLE 409 PD S NPYLA +A+LMAGLDGI KI P ++ EL EE +IP+ L + ++ Sbjct: 377 SPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLSDVID 436 Query: 410 NLDKDREFLKVGNVFDDDQIDAFINLKMK-EVLKLESSPSPVEFEMYCSI 458 L+ D E+L G VF +D I+ +I+ K + E+ + P P EF +Y + Sbjct: 437 RLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 486 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Score = 238 bits (609), Expect = 2e-63 Identities = 75/454 (16%), Positives = 121/454 (26%), Gaps = 39/454 (8%) Query: 5 ATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKH 64 A ++ + + F+ TD G R S+ F + G D G Sbjct: 2 AEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAA 61 Query: 65 -PNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIG 123 +++L+P++ T IC+ PRY A+ A+ LQ Sbjct: 62 ASDIVLMPELSTXXXXXXXXXXXXXVICD-----GGXXXXXSPRYIARAALAQLQAAGAA 116 Query: 124 DTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKL 183 LL +F +F + S+ Sbjct: 117 AGLLSAFIADFCIFGVPE-------------------------VINSKTISFPASTTAAA 151 Query: 184 HDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSES-LLHASDNLQKYKYSVHQVANS 242 D E + G E+ A+DN + + +VA Sbjct: 152 ADQPQEAAA-GGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARR 210 Query: 243 YCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSL 302 Y + + F G R +L G +L G Sbjct: 211 YNAXXXXXXXXXXXXXXXXSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGXXXXXXXX 270 Query: 303 NALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362 + + I IE + +ANPY Sbjct: 271 XXXXXXXXXXXXXXXXXXXXXXXTAWGXXXXXCALNIXXXXXXKGAQIENKAGAAAANPY 330 Query: 363 LAPAAILMAGLDGIAKKIHPGKNIDE-LSLEEQNTIPRICISLRESLENLDKDREFLKVG 421 L AA + AGLDGI + IP + ++L L++D E LK Sbjct: 331 LVLAATVAAGLDGIQSAGAAAGAAAADXXXXXPSEIPG---KMEDALAALEQDAECLK-- 385 Query: 422 NVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMY 455 + I A + E+ E+ +F Y Sbjct: 386 AGLGEAFIRAAVAAAKYELENEETDAEGNKFLEY 419 >2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Score = 152 bits (384), Expect = 2e-37 Identities = 70/367 (19%), Positives = 124/367 (33%), Gaps = 38/367 (10%) Query: 15 EKVK----FIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLI 70 EKV+ +ID L+ K R + E N FD SS + ++ L+ Sbjct: 43 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWN---FDGSSTLQSEGSNSDMYLV 99 Query: 71 PDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGI 130 P M DPF +C V+ +P + R+T ++ +D + Sbjct: 100 PA--AMFRDPFRKDPNKLVLCEVFKYNR-RPAETNLRHTCKRIMDMVSN----------- 145 Query: 131 TTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEI 190 + + + + F N + D+ Sbjct: 146 -------QHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAH 198 Query: 191 VSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250 A GV+I + ++ AQ F + + D+L ++ +H+V + IATF Sbjct: 199 YRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFD 258 Query: 251 PKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAST 310 PKPI N +G + + G ++ +H + A Sbjct: 259 PKPI-PGNWNGAGCHTNFSTKAMREENGLKYI-----EEAIEKLSKRHQYHIRAYDPKGG 312 Query: 311 -NSYKRLLTDSQSPTKLTYS--THNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPA 366 ++ +RL ++ +S N SAS RIP + K E R P + +P+ Sbjct: 313 LDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTE 372 Query: 367 AILMAGL 373 A++ L Sbjct: 373 ALIRTCL 379 >3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Score = 150 bits (378), Expect = 8e-37 Identities = 66/376 (17%), Positives = 131/376 (34%), Gaps = 36/376 (9%) Query: 16 KVKFIDLRFT-DLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLIPDIE 74 +++ + T +L+ K R + ++ ++ N FD SS + ++ L P Sbjct: 25 IAEYVWIDGTGNLRSKGRTLKKRITSIDQLPEWN---FDGSSTNQAPGHDSDIYLKPV-- 79 Query: 75 TMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEF 134 + DPF + + Y+ P + R+ A K + + G+ E+ Sbjct: 80 AYYPDPFRRGDNIVVLAACYNNDG-TPNKFNHRHEAAKLFAAH----KDEEIWFGLEQEY 134 Query: 135 FVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSAL 194 +FD K G+ Y + DM A Sbjct: 135 TLFDMYDDVYGWPKGGY---------PAPQGPYYCGVGAGKVYA-----RDMIEAHYRAC 180 Query: 195 NNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPI 254 G++I+ + ++ +Q F + + + D L +Y +H+VA + +F PKP+ Sbjct: 181 LYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPL 240 Query: 255 -ASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSY 313 NG+G + N+S + + G ++ +++ + K L + + Sbjct: 241 KGDWNGAGCHANVSTKEMRQ--PGGTKYIEQAIEK------LSKRHAEHIKLYGSDNDMR 292 Query: 314 KRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPAAILMAG 372 ++ S T + N +S RIP + E R P + +PYL + Sbjct: 293 LTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETV 352 Query: 373 LDGIAKKIHPGKNIDE 388 I K + Sbjct: 353 CGAI-DNADMTKEFER 367 >2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Score = 144 bits (363), Expect = 4e-35 Identities = 67/367 (18%), Positives = 129/367 (35%), Gaps = 36/367 (9%) Query: 11 KIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHSKHPNLLLI 70 KI E + +I DL+ K R + V+ ++ L +D SS + ++L Sbjct: 18 KIIAEYI-WIGGSGMDLRSKARTLPGPVTDPSK---LPKWNYDGSSTGQAPGEDSEVILY 73 Query: 71 PDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGI 130 P + DPF + + +C+ Y P +P + RY+A K + + GI Sbjct: 74 PQ--AIFKDPFRRGNNILVMCDCYTPAG-EPIPTNKRYSAAKIFSSPE--VAAEEPWYGI 128 Query: 131 TTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEI 190 E+ + G+ + Q G + + D+ Sbjct: 129 EQEYTLLQKDT----NWPLGWPIGGFPGPQGPYYCGIGAE---------KSFGRDIVDAH 175 Query: 191 VSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250 A G+ I+ + ++ Q F + + + D + +Y + ++ + TF Sbjct: 176 YKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFD 235 Query: 251 PKP-IASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAS 309 PKP NG+G + N S K ++H + + A Sbjct: 236 PKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKA-------AIEKLKLRHKEHIAAYGE-- 286 Query: 310 TNSYKRLLTDSQSPT--KLTYSTHNHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPA 366 + +RL ++ ++ N AS R+ E + + K E R P + +PY+ + Sbjct: 287 -GNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTS 345 Query: 367 AILMAGL 373 I + Sbjct: 346 MIAETTI 352 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 78.8 bits (194), Expect = 2e-15 Identities = 91/512 (17%), Positives = 162/512 (31%), Gaps = 192/512 (37%) Query: 3 DKATSIIQKIAQEKVKFI----DLRFTDLQGKFRHISMNVSL--FNENTLLNGITFDSSS 56 D+ T+ + + KF+ L G+F + +N+ L F EN L G + Sbjct: 52 DEPTTPAELVG----KFLGYVSSLVEPSKVGQFDQV-LNLCLTEF-ENCYLEG-----ND 100 Query: 57 IDGWHSKHPNLL--LIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAI 114 I H+ L L+ + +T + Y TA+ Sbjct: 101 I---HA----LAAKLLQENDT-------TLVKTKELIKNY-------------ITARIMA 133 Query: 115 DYLQTTDIGDTLLL-----------------GITTEFFVFD---NVHCTISPIKSGFALE 154 ++ L G T ++F + +++ T + Sbjct: 134 K-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKF 190 Query: 155 STEFLQN------------GNNKGYDSHA--KSSYTLPPQDKLHDMRSEIVSA-----LN 195 S E L +G + ++ P +D L +S L Sbjct: 191 SAETLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYL-------LSIPISCPL- 240 Query: 196 NIG-VQITKY----HN------QIND-----AQHSFGLQSESLLHASDNLQKYKYSVHQV 239 IG +Q+ Y ++ HS GL + + +D+ + + SV + Sbjct: 241 -IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299 Query: 240 AN------SYCKIA---TFMPKPIASH----NGSG----MYL---NMSIHKGEKAIFTGN 279 C A T +P P N G M L N++ + + + N Sbjct: 300 ITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTN 357 Query: 280 QH----DRVSLKGL------YYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYS 329 H +V + L + G +SL L N L +++P+ L S Sbjct: 358 SHLPAGKQVEI-SLVNGAKNLVVSG---PPQSLYGL-----NLT---LRKAKAPSGLDQS 405 Query: 330 THNHSASCRIPYENKSDNK-SIEIRFPDLSA---NPYLAPAA-ILMAGL--DGI---AK- 378 RIP+ S+ K RF +++ + L PA+ ++ L + + AK Sbjct: 406 --------RIPF---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454 Query: 379 -KI-----HPGKNIDELSLEEQNTIPRI--CI 402 +I G ++ LS + RI CI Sbjct: 455 IQIPVYDTFDGSDLRVLS---GSISERIVDCI 483 Score = 39.5 bits (92), Expect = 0.001 Identities = 78/447 (17%), Positives = 126/447 (28%), Gaps = 192/447 (42%) Query: 68 LLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLL 127 LL+P +Q F L P T A D TT L+ Sbjct: 20 LLVPT--ASF--FIASQLQEQFNK------IL------PEPTEGFAADDEPTTPAE--LV 61 Query: 128 LGITTEF--FVFDNVHCTISPIKSGFALES---------TEFLQNGNNKGYDSHAKSSYT 176 +F +V V P K G + +L+ GN D HA ++ Sbjct: 62 G----KFLGYVSSLVE----PSKVGQFDQVLNLCLTEFENCYLE-GN----DIHALAAKL 108 Query: 177 LPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLL--HASDNLQKYKY 234 L D E++ Y A+ F +S S L + Sbjct: 109 LQENDTTLVKTKELIKN----------YITARIMAKRPFDKKSNSALFRAVGEG------ 152 Query: 235 SVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIF--TGNQHDRVS-LKGLY- 290 N + AIF GN D L+ LY Sbjct: 153 ------------------------------NAQLV----AIFGGQGNTDDYFEELRDLYQ 178 Query: 291 -Y---LGGIIKH-AKSLNALTNASTNSYKRL---------LTDSQS-PTK---------- 325 Y +G +IK A++L+ L + ++ K L + + P K Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238 Query: 326 ----LTYSTHNHSASCRI----P--------------------------------YENKS 345 + H + + ++ P + + Sbjct: 239 PLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV- 296 Query: 346 DNKSIEI------R----FPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE-Q 394 K+I + R +P+ S L P+ IL L+ P +I L+ E+ Q Sbjct: 297 -RKAITVLFFIGVRCYEAYPNTS----LPPS-ILEDSLENNEGVPSPMLSISNLTQEQVQ 350 Query: 395 NTI-------P---RICISLRESLENL 411 + + P ++ ISL +NL Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNL 377 Score = 29.5 bits (66), Expect = 1.7 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 89/251 (35%) Query: 264 LNMSIHKGEKAIFTGNQHDRV--SLKGLYY---LGGIIKHAKSLNALTNASTN----SYK 314 +N++IH F G + R+ + + + + G +K K + ST+ S K Sbjct: 1670 VNLTIH------FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723 Query: 315 RLLTDSQ----------------------SPTKLTYSTHN---HSASCRIPYENKSDNKS 349 LL+ +Q P T++ H+ ++A + +D S Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-----ADVMS 1778 Query: 350 IE--------------IRFP--DLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE 393 IE + P +L + Y G+ IA I+PG+ S E Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNY---------GM--IA--INPGRVAASFSQEA 1825 Query: 394 -QNTIPRICIS---LRE----SLENLDKDREFLKVGNVFDDDQIDA---FINLKMKEVLK 442 Q + R+ L E ++EN ++++ G++ D + FI L+ ++++ Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVEN----QQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881 Query: 443 LESSPSPVEFE 453 L+ S S E E Sbjct: 1882 LQKSLSLEEVE 1892 >1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET: NAG; 1.90A {Tick-borne encephalitis virus} SCOP: b.1.18.4 f.10.1.1 PDB: 1k4r_A 1na4_A 1n6g_A* 1urz_A 1z3r_A 2gg1_A 1z66_A Length = 395 Score = 30.1 bits (68), Expect = 1.0 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362 ++KR TDS T ++T+S + CRIP + ++ NP Sbjct: 313 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 363 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 1.1 Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 12/35 (34%) Query: 297 KHA-KSLNALTNASTNSYKRLLTDSQSPT---KLT 327 K A K L A S K L D +P K T Sbjct: 19 KQALKKLQA-------SLK-LYADDSAPALAIKAT 45 Score = 28.4 bits (62), Expect = 3.7 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 19/38 (50%) Query: 414 DREFLKVGNVFDDDQIDAFINLKMKEVLKL---ESSPS 448 +++ LK K++ LKL +S+P+ Sbjct: 18 EKQALK----------------KLQASLKLYADDSAPA 39 >1k3p_A Type II citrate synthase; lyase; 2.20A {Escherichia coli} SCOP: a.103.1.1 PDB: 1owb_A* 1owc_A 1nxe_A 1nxg_A* Length = 426 Score = 28.5 bits (63), Expect = 2.9 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 1/103 (0%) Query: 357 LSANPYLAPAAILMAGLDGIAKKIHPGKNIDELS-LEEQNTIPRICISLRESLENLDKDR 415 + + P A + AG+ + H G N L LEE +++ I R + + D R Sbjct: 240 TAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFR 299 Query: 416 EFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 V+ + A + + + E E+ + Sbjct: 300 LMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMEL 342 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Length = 144 Score = 28.3 bits (63), Expect = 3.2 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 386 IDELSLEEQNTIPRICISLRESLENLDKDREFLKVG 421 + LS E + + L +N+ +D EF+K G Sbjct: 112 LQGLSEVEISQLADY---LVRMRKNVSEDWEFVKKG 144 >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520 Score = 28.3 bits (63), Expect = 3.8 Identities = 9/34 (26%), Positives = 15/34 (44%) Query: 360 NPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEE 393 PYLA ++ LD +K+ +D + L Sbjct: 665 CPYLALESVRQWWLDEKTQKLMENGRLDRIDLPT 698 >2jqm_A Envelope protein E; yellow fever envelope protein domain III, asibi strain, structure, transferase; NMR {Yellow fever virus} PDB: 2jv6_A Length = 112 Score = 27.8 bits (62), Expect = 4.8 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362 S+ + TD+ T ++ A C+IP D + + ++ NP Sbjct: 19 SFVKNPTDTGHGTVVMQVKVPK---GAPCKIPVIVADDLTAAINKGILVTVNPI 69 >2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metabolism, secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A* Length = 646 Score = 27.3 bits (60), Expect = 7.2 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 1/46 (2%) Query: 91 CNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFV 136 C I N+ P Y + +Q IG LLG EF V Sbjct: 370 CQAEKTILADTGNKKP-YPWTPTVLPIQMFRIGQLELLGAPAEFTV 414 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0567 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,741,057 Number of extensions: 166969 Number of successful extensions: 421 Number of sequences better than 10.0: 1 Number of HSP's gapped: 390 Number of HSP's successfully gapped: 22 Length of query: 458 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 362 Effective length of database: 3,365,806 Effective search space: 1218421772 Effective search space used: 1218421772 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.5 bits)