RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] (458 letters) >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368 Score = 271 bits (694), Expect = 8e-74 Identities = 164/368 (44%), Positives = 231/368 (62%), Gaps = 12/368 (3%) Query: 103 NRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQN- 161 +RDPR A++A DYL+ T I DT+L G EFF+FD++ S S A++ E N Sbjct: 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNS 60 Query: 162 -----GNNKGYDSHAKSSY-TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQ-HS 214 G NKG+ K Y +PP D D+RSE+ + +G+ + +H+++ A + Sbjct: 61 STKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNE 120 Query: 215 FGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKA 274 + ++ +D +Q YKY VH VA+ + K ATFMPKP+ NGSGM+ +MS+ K Sbjct: 121 VATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTN 180 Query: 275 IFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHS 334 +F+G+++ +S + LYY+GG+IKHAK++NAL N +TNSYKRL+ ++P L YS N S Sbjct: 181 LFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS 240 Query: 335 ASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPG----KNIDELS 390 AS RIP + IE+RFPD +ANPYL AA+LMAGLDGI KIHPG KN+ +L Sbjct: 241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLP 300 Query: 391 LEEQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPV 450 EE IP++ SL E+L LD DREFLK G VF D+ IDA+I L+ +E ++ +P PV Sbjct: 301 PEEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPV 360 Query: 451 EFEMYCSI 458 EFE+Y S+ Sbjct: 361 EFELYYSV 368 >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 374 Score = 242 bits (618), Expect = 5e-65 Identities = 135/373 (36%), Positives = 199/373 (53%), Gaps = 18/373 (4%) Query: 104 RDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN 163 RDPR A+KA +YL +T I DT G EF++FD+V S + +++ N Sbjct: 2 RDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTG 61 Query: 164 ---------NKGYDSHAKSSY-TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQ- 212 N+GY K Y + P D+ D+R ++++ L N G + K H+++ Sbjct: 62 AATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQ 121 Query: 213 HSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSI-HKG 271 Q SLLHA+D++Q YKY + A K TFMPKP+ NGSGM+ + S+ G Sbjct: 122 AEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDG 181 Query: 272 EKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTH 331 ++ + +S +Y+GG++ HA SL A TN + NSYKRL+ ++P L YS Sbjct: 182 APLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQR 241 Query: 332 NHSASCRIPYENKSDNKS-IEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPG----KNI 386 N SA RIP + +E R PD S NPYLA +A+LMAGLDGI KI P K++ Sbjct: 242 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDL 301 Query: 387 DELSLEEQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMK-EVLKLES 445 EL EE +IP+ L + ++ L+ D E+L G VF +D I+ +I+ K + E+ + Sbjct: 302 YELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNI 361 Query: 446 SPSPVEFEMYCSI 458 P P EF +Y + Sbjct: 362 RPHPYEFALYYDV 374 >d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 100 Score = 100 bits (250), Expect = 2e-22 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 1/99 (1%) Query: 5 ATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSK 63 A ++ + + +VKF+DLRFTD +GK +H+++ N G FD SSI GW Sbjct: 2 AEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGIN 61 Query: 64 HPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPY 102 +++L+PD T +DPF+A ST+ C++ +P TLQ Y Sbjct: 62 ESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGY 100 >d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 100 Score = 93.9 bits (233), Expect = 2e-20 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 1/96 (1%) Query: 8 IIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW-HSKHPN 66 + + EKV+++D+RF DL G +H ++ S F+++ +G+ FD SSI G+ + Sbjct: 5 VFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESD 64 Query: 67 LLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPY 102 +LL+PD ET +DPF A T+ V+DP TL+PY Sbjct: 65 MLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPY 100 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Length = 144 Score = 28.9 bits (64), Expect = 0.81 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 386 IDELSLEEQNTIPRICISLRESLENLDKDREFLKVG 421 + LS E + + L +N+ +D EF+K G Sbjct: 112 LQGLSEVEISQLADY---LVRMRKNVSEDWEFVKKG 144 >d1svba1 b.1.18.4 (A:303-395) Envelope glycoprotein {Tick-borne encephalitis virus [TaxId: 11084]} Length = 93 Score = 26.6 bits (59), Expect = 4.0 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362 ++KR TDS T ++T+S + CRIP + ++ NP Sbjct: 11 TWKRAPTDSGHDTVVMEVTFSG---TKPCRIPVRAVAHGSPDVNVAMLITPNPT 61 >d1ztxe1 b.1.18.4 (E:300-400) Envelope glycoprotein {West Nile virus [TaxId: 11082]} Length = 101 Score = 25.5 bits (56), Expect = 8.8 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 312 SYKRLLTDSQSPT---KLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPY 362 + D+ T +L Y+ + C++P + + + ++ NP+ Sbjct: 11 KFLGTPADTGHGTVVLELQYTGTD--GPCKVPISSVASLNDLTPVGRLVTVNPF 62 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0467 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,627,299 Number of extensions: 74153 Number of successful extensions: 145 Number of sequences better than 10.0: 1 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 8 Length of query: 458 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 370 Effective length of database: 1,199,356 Effective search space: 443761720 Effective search space used: 443761720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.2 bits)