BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780185|ref|YP_003064598.1| glutamine synthetase protein
[Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 458
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW 60
MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW
Sbjct: 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGW 60
Query: 61 HSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTT 120
HSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTT
Sbjct: 61 HSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTT 120
Query: 121 DIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ 180
DIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ
Sbjct: 121 DIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ 180
Query: 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA 240
DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA
Sbjct: 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA 240
Query: 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAK 300
NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAK
Sbjct: 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAK 300
Query: 301 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN 360
SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN
Sbjct: 301 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN 360
Query: 361 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV 420
PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV
Sbjct: 361 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV 420
Query: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI
Sbjct: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458
>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 461
Score = 103 bits (258), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 171/394 (43%), Gaps = 30/394 (7%)
Query: 66 NLLLIPDIETMHMDPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDT 125
+L L PD+ T+ + P+ T +C+V D + PR ++ +++ ++
Sbjct: 88 DLRLSPDLSTLSIVPWEMDPTAQIVCDVVD-YNGKEVTYTPRNVLKRVLNFYAQNELKP- 145
Query: 126 LLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHD 185
++ EF++ P++ L SY++ ++ +
Sbjct: 146 -IIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSIL-----------GGQSYSIMGINEFDE 193
Query: 186 MRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCK 245
+ +I G++I ++ AQ ++ L +D + +K ++ + A +
Sbjct: 194 IIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDI 253
Query: 246 IATFMPKPIASHNGSGMYLNMSIH--KGEKAIFT---GNQHDRVSLKGLYYLGGIIKHAK 300
ATFM KP+ ++ GS M+++ S+ K + IF+ G++ D Y++GG+ K+
Sbjct: 254 YATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFR----YFIGGLQKYIP 309
Query: 301 SLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSAN 360
+ + NSY+RL+ D P + N + + RIP+ + + K IE R P N
Sbjct: 310 NALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFSD-AKTKRIENRLPSSDTN 368
Query: 361 PYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRICISLRESLENLDKDREFLKV 420
PYL AA L GL GI +KI P + + +E +PR L E++ L+ F
Sbjct: 369 PYLVLAASLACGLLGILQKIEPTPPTMKSANQEAINLPR---GLLEAVTLLENTSHF--- 422
Query: 421 GNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEM 454
++F ID + NLK E SP E E
Sbjct: 423 KDIFGSQFIDMYANLKRNEFETFMQVISPWEREF 456
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 511
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 410 NLDKDREFLKVGNVFDDDQIDAFINLK-MKEVLKLESSPSP-VEFEMYCSI 458
LD D ++V F ID+FI L ++E L E P P M C I
Sbjct: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 753
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 408 LENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLE 444
+ N DK + + ++Q+DA +NL+++ + KLE
Sbjct: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 896
Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 345 SDNKSIEIRF-PDLSANPYLAPAAILMAGLDGIAKK 379
S N++ E R PD+ AN L+P ++ L G +K
Sbjct: 534 SGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRK 569
>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Length = 910
Score = 24.3 bits (51), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 187 RSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNL 229
R +I + LN++G++I + + ++ G+ + LL D L
Sbjct: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 452
Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 79 DPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAID 115
DP Y STVA + N + + + D R K ID
Sbjct: 300 DPGYTNSTVAKVGNTHYYVDTESTTLDSRKDLPKEID 336
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 23.5 bits (49), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 241 NSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQ--HDRVSLKGL 289
N + IAT + P+A YL+ + + E GN+ +D + LK L
Sbjct: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293,155
Number of Sequences: 1233
Number of extensions: 12479
Number of successful extensions: 46
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 11
length of query: 458
length of database: 328,796
effective HSP length: 77
effective length of query: 381
effective length of database: 233,855
effective search space: 89098755
effective search space used: 89098755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)