HHsearch alignment for GI: 254780186 and conserved domain: TIGR03423

>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=96.24  E-value=0.0044  Score=40.83  Aligned_cols=224  Identities=20%  Similarity=0.113  Sum_probs=111.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCC---HHHHHHHCC-CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH-
Q ss_conf             401999999999999996112---899999465-765677204442011489847631113799999864488888999-
Q gi|254780186|r   58 LFSIQSISKVFLLTIALRKFD---EEIWKRVGR-EPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDA-  132 (311)
Q Consensus        58 ~FsiqSisK~f~l~~al~~~G---~~V~~~VG~-ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~-  132 (311)
T Consensus       303 ~yePGStfK~~t~aaaLe~g~i~~~~~~~~~g~~~~~~~~i------~d~~~~~~g~lt~~~~l~~SsNvg~-~~ia~~l  375 (592)
T TIGR03423       303 VYPPGSTFKPFVALAALEEGVITPDTRINCPGYFQLGGRRF------RCWKRGGHGRVDLRKAIEESCDVYF-YQLALRL  375 (592)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCC------CCCCCCCCCEECHHHHHHEEECHHH-HHHHHHC
T ss_conf             44687268999999999759999985896078302598523------0478888630145544103833999-7898861


Q ss_pred             -HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             -9999999998728998624789999851124127999999982788889989999999987300007999999999982
Q gi|254780186|r  133 -IENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLA  211 (311)
Q Consensus       133 -~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LA  211 (311)
T Consensus       376 g~~~~~~~~~~fGfg~~tgidl---p~E~~-G~-lp~~~w~~~~~~~~~~-~~~~~~~siGQG~i~~TplQla~a~~~ia  449 (592)
T TIGR03423       376 GIDKIAEYAKKFGFGQKTGIDL---PGEKS-GL-VPSREWKRKRFGQPWY-PGDTLNVSIGQGYVLVTPLQLAVATAALA  449 (592)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCC---CCCCC-CC-CCCHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8788999998467887768998---77748-86-8996897642057777-44233541036743158899999999886


Q ss_pred             CCCCC---------------------CCCCCE-ECCHHHHHHHHHHHHHCCC-CHHHHHHHHH-HC--CCCCCCCC----
Q ss_conf             59707---------------------778875-5189999775544541133-1256678987-07--87156522----
Q gi|254780186|r  212 FRGYN---------------------SLTNQS-VISPLQSRCVNAVMLTCGH-YDHSGDFAYR-VG--FPGKSGVG----  261 (311)
Q Consensus       212 n~G~~---------------------P~t~~~-vi~~~~~~~v~s~M~TcGm-Yd~SG~fa~~-VG--lPaKSGVg----  261 (311)
T Consensus       450 N~G~~~~P~lv~~i~d~~g~~~~~~~~~~~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~  529 (592)
T TIGR03423       450 NGGKLYKPHLVKSIEDPDGGVVQETEPEVLPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVS  529 (592)
T ss_pred             CCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCC
T ss_conf             19838521899975168885664048754566578999999999999998328994757524899987999963676245


Q ss_pred             -------------------CEEEEEECCC---CEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             -------------------1103343785---179987532077898489999999
Q gi|254780186|r  262 -------------------GGILAIVPSK---ASIAVWSPGLDNSGNSLLGAKALE  295 (311)
Q Consensus       262 -------------------GgilavvPg~---~gIav~SP~LD~~GNSv~G~~~le  295 (311)
T Consensus       530 ~~~~~~~~~~~~~~~~~~~asFvG~~P~~~P~~~v~V~v~~-~~~Gg~~AaPvf~~  584 (592)
T TIGR03423       530 LKQGEKYDAEQIPERLRDHALFVAFAPYDNPEIAVAVIVEH-GGGGSSAAAPIARK  584 (592)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEC-CCCCHHHHHHHHHH
T ss_conf             78875325554554567777999997878987999999968-99511489999999