HHsearch alignment for GI: 254780186 and conserved domain: TIGR03423
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=96.24 E-value=0.0044 Score=40.83 Aligned_cols=224 Identities=20% Similarity=0.113 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCC---HHHHHHHCC-CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH-
Q ss_conf 401999999999999996112---899999465-765677204442011489847631113799999864488888999-
Q gi|254780186|r 58 LFSIQSISKVFLLTIALRKFD---EEIWKRVGR-EPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDA- 132 (311)
Q Consensus 58 ~FsiqSisK~f~l~~al~~~G---~~V~~~VG~-ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~- 132 (311)
T Consensus 303 ~yePGStfK~~t~aaaLe~g~i~~~~~~~~~g~~~~~~~~i------~d~~~~~~g~lt~~~~l~~SsNvg~-~~ia~~l 375 (592)
T TIGR03423 303 VYPPGSTFKPFVALAALEEGVITPDTRINCPGYFQLGGRRF------RCWKRGGHGRVDLRKAIEESCDVYF-YQLALRL 375 (592)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCC------CCCCCCCCCEECHHHHHHEEECHHH-HHHHHHC
T ss_conf 44687268999999999759999985896078302598523------0478888630145544103833999-7898861
Q ss_pred -HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf -9999999998728998624789999851124127999999982788889989999999987300007999999999982
Q gi|254780186|r 133 -IENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLA 211 (311)
Q Consensus 133 -~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LA 211 (311)
T Consensus 376 g~~~~~~~~~~fGfg~~tgidl---p~E~~-G~-lp~~~w~~~~~~~~~~-~~~~~~~siGQG~i~~TplQla~a~~~ia 449 (592)
T TIGR03423 376 GIDKIAEYAKKFGFGQKTGIDL---PGEKS-GL-VPSREWKRKRFGQPWY-PGDTLNVSIGQGYVLVTPLQLAVATAALA 449 (592)
T ss_pred CHHHHHHHHHHCCCCCCCCCCC---CCCCC-CC-CCCHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8788999998467887768998---77748-86-8996897642057777-44233541036743158899999999886
Q ss_pred CCCCC---------------------CCCCCE-ECCHHHHHHHHHHHHHCCC-CHHHHHHHHH-HC--CCCCCCCC----
Q ss_conf 59707---------------------778875-5189999775544541133-1256678987-07--87156522----
Q gi|254780186|r 212 FRGYN---------------------SLTNQS-VISPLQSRCVNAVMLTCGH-YDHSGDFAYR-VG--FPGKSGVG---- 261 (311)
Q Consensus 212 n~G~~---------------------P~t~~~-vi~~~~~~~v~s~M~TcGm-Yd~SG~fa~~-VG--lPaKSGVg---- 261 (311)
T Consensus 450 N~G~~~~P~lv~~i~d~~g~~~~~~~~~~~~~~~is~~ta~~v~~~m~~VV~~~~GTg~~a~~~~gy~vaGKTGTAq~~~ 529 (592)
T TIGR03423 450 NGGKLYKPHLVKSIEDPDGGVVQETEPEVLPPLPISPENLDVVREGMRDVVNEPRGTARRARLGLDYKMAGKTGTAQVVS 529 (592)
T ss_pred CCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCEEEEEEECCCCCC
T ss_conf 19838521899975168885664048754566578999999999999998328994757524899987999963676245
Q ss_pred -------------------CEEEEEECCC---CEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf -------------------1103343785---179987532077898489999999
Q gi|254780186|r 262 -------------------GGILAIVPSK---ASIAVWSPGLDNSGNSLLGAKALE 295 (311)
Q Consensus 262 -------------------GgilavvPg~---~gIav~SP~LD~~GNSv~G~~~le 295 (311)
T Consensus 530 ~~~~~~~~~~~~~~~~~~~asFvG~~P~~~P~~~v~V~v~~-~~~Gg~~AaPvf~~ 584 (592)
T TIGR03423 530 LKQGEKYDAEQIPERLRDHALFVAFAPYDNPEIAVAVIVEH-GGGGSSAAAPIARK 584 (592)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEC-CCCCHHHHHHHHHH
T ss_conf 78875325554554567777999997878987999999968-99511489999999