HHsearch results for GI: 254780186 and protein with PDBid: 1vqq_A
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=94.71 E-value=0.11 Score=30.33 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC--C---------CCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 8999999998730000799999999998259707--7---------7887551899997755445411331256678987
Q gi|254780186|r 183 IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYN--S---------LTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR 251 (311)
Q Consensus 183 v~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~--P---------~t~~~vi~~~~~~~v~s~M~TcGmYd~SG~fa~~ 251 (311)
.....+.=|=|..+.+|.-+||.+.+++||+|+- | ..+++++++++++.+...|...=- +.+|.-++.
T Consensus 489 ~~~la~~s~GQG~v~vTPLqmA~ayaaiAN~G~~~~P~lV~~~~~~~~~~~vis~~~a~~l~~~m~~VV~-~Gt~~~~~~ 567 (646)
T 1vqq_A 489 EILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQVVN-KTHKEDIYR 567 (646)
T ss_dssp HHHHHHHHTTCSSCBBCHHHHHHHHHGGGTTTCEECCBCBTTSCCCEEECCCSCHHHHHHHHHHHHHHHH-TTTTTTTCC
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCEECCC
T ss_conf 5224220467775123799999999999749818611899557887677778999999999999999975-434022115
Q ss_pred HCC--CCCCCCC---------C---EEEEEECC---CCEEEEECCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf 078--7156522---------1---10334378---517998753207789848-99999999999
Q gi|254780186|r 252 VGF--PGKSGVG---------G---GILAIVPS---KASIAVWSPGLDNSGNSL-LGAKALELLAI 299 (311)
Q Consensus 252 VGl--PaKSGVg---------G---gilavvPg---~~gIav~SP~LD~~GNSv-~G~~~le~ls~ 299 (311)
-|. -+|.|-. | +-.+.-|. +..++||=.--...|.|. .|..+-.-+.+
T Consensus 568 ~~~~vaGKTGTAe~~~~~g~~~~~~awFvgf~~d~P~~av~V~ve~~~~~g~~~~g~~vA~pv~~~ 633 (646)
T 1vqq_A 568 SYANLIGKSGTAELKMKQGETGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDE 633 (646)
T ss_dssp TTSCEEEEEEEEECC------CCEEEEEEEEETTSCSCEEEEEEECCTTTTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 898899982657076778998980699999858999699999997278888662328999999999