HHsearch results for GI: 254780186 and protein with PDBid: 2wad_A

>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=97.23  E-value=0.0016  Score=42.36  Aligned_cols=218  Identities=18%  Similarity=0.160  Sum_probs=114.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCC----CCCCCHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHC
Q ss_conf             40199999999999999611289999946576----567720444201148984763111379999---------98644
Q gi|254780186|r   58 LFSIQSISKVFLLTIALRKFDEEIWKRVGREP----SGSSFDSIVQLENENGIPRNPFVNAGAIVV---------SDAVL  124 (311)
Q Consensus        58 ~FsiqSisK~f~l~~al~~~G~~V~~~VG~eP----Sg~~FNSi~~Le~~~g~P~NPmiNAGAI~~---------~sli~  124 (311)
                      .|.--|+-|||+++.||+..--.--+.+...|    .+.+++.-    ...++.+.++-=..||+-         +..+.
T Consensus       381 ~~~PGStfKp~~~~aALe~g~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~g~itl~~Al~~S~N~~~~~~a~~~~  456 (680)
T 2wad_A          381 VFVPGSVVKAATISSGWENGVLSGNQTLTDQPIVFQGSAPIYSW----YKLAYGSFPITAVEALEYSSNAYVVQTALGIM  456 (680)
T ss_dssp             CBCCGGGGHHHHHHHHHHTTSCCSSCCEEECCBCBTTSCCBCCT----TTTTTCSEEECHHHHHHHTCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
T ss_conf             35787521678899999708999873571378422368864210----13677887720563645075599999998750


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC--CCHHHHHHHHHH
Q ss_conf             ----------88888999999999999872899862478999985112412799999998278888--998999999998
Q gi|254780186|r  125 ----------GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR--YKIEDVLKFYFH  192 (311)
Q Consensus       125 ----------~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~--~dv~~~Ld~Yf~  192 (311)
                                +....+..++++.++++++--+.+..+|-   -.|.               .|.++  .+..+.+..-+-
T Consensus       457 ~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~l---p~E~---------------~G~~~~~~~~~~~~~~~~G  518 (680)
T 2wad_A          457 GQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDL---PDES---------------TGLVPKEYNFANFITNAFG  518 (680)
T ss_dssp             TCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCSS---SCCC---------------CCBCCSSCCHHHHHHHTTT
T ss_pred             CCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCC---------------CCCCCCCCCCCCCCCCCCC
T ss_conf             244540333042678765468899999709986568866---5445---------------6767752333322322357


Q ss_pred             HHHHHCCHHHHHHHHHHHHCCCCC--CCC-------------------------CCEECCHHHHHHHHHHHHHC--CCC-
Q ss_conf             730000799999999998259707--778-------------------------87551899997755445411--331-
Q gi|254780186|r  193 QCSLMMNCVQLAKSGLYLAFRGYN--SLT-------------------------NQSVISPLQSRCVNAVMLTC--GHY-  242 (311)
Q Consensus       193 ~Csi~~t~~dLA~~~a~LAn~G~~--P~t-------------------------~~~vi~~~~~~~v~s~M~Tc--GmY-  242 (311)
                      | .+.+|.-+||.+.+++||+|+-  |.-                         .+++++++++..+...|...  |.. 
T Consensus       519 q-g~~vTPlqma~aya~iaN~G~~~~P~~v~~I~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~m~~Vv~gt~~  597 (680)
T 2wad_A          519 Q-FDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTSP  597 (680)
T ss_dssp             S-SSBBCHHHHHHHHHHHHTTTEEECCBSEEEEEEECTTSSEEEEEEECCCCEEEECSSCHHHHHHHHHHHHHHHHCCST
T ss_pred             C-CCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             7-677899999999999975975972089998744777555673012368752465679999999999999998728786


Q ss_pred             HHHHHHHH-H--HCCCCCCCCC------C------EEEEEECC---CCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             25667898-7--0787156522------1------10334378---51799875320778984899999999999
Q gi|254780186|r  243 DHSGDFAY-R--VGFPGKSGVG------G------GILAIVPS---KASIAVWSPGLDNSGNSLLGAKALELLAI  299 (311)
Q Consensus       243 d~SG~fa~-~--VGlPaKSGVg------G------gilavvPg---~~gIav~SP~LD~~GNSv~G~~~le~ls~  299 (311)
                      ..+|.-.. .  +-+-+|+|-+      |      =.++-.|-   +..|+||-|.=...|.++++ .+.+.+.+
T Consensus       598 ~gt~~~~~~~~~~~vaGKTGTAq~~~~~~~~~~~awFvGy~P~~~P~~~v~V~v~~~~~~g~~~A~-~i~~~i~~  671 (680)
T 2wad_A          598 LTTGRAFSDGATVSISGKTGTGESYVAGGQEATNTNAVAYAPTENPQIAVAVVFPHNTNLTKNVGP-AIARDIIN  671 (680)
T ss_dssp             TCCCGGGTTTCSSCCEEEECC------------CCCEEEEESTTSCCEEEEEECTTCCCCSCCHHH-HHHHHHHH
T ss_pred             CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHH-HHHHHHHH
T ss_conf             634563215799889998434352579998667089999997689869999999689953888999-99999999