HHsearch results for GI: 254780186 and protein with PDBid: 2wad_A
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transmembrane, antibiotic resistance, cell shape, peptidoglycan, cell membrane; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=97.23 E-value=0.0016 Score=42.36 Aligned_cols=218 Identities=18% Similarity=0.160 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCC----CCCCCHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHC
Q ss_conf 40199999999999999611289999946576----567720444201148984763111379999---------98644
Q gi|254780186|r 58 LFSIQSISKVFLLTIALRKFDEEIWKRVGREP----SGSSFDSIVQLENENGIPRNPFVNAGAIVV---------SDAVL 124 (311)
Q Consensus 58 ~FsiqSisK~f~l~~al~~~G~~V~~~VG~eP----Sg~~FNSi~~Le~~~g~P~NPmiNAGAI~~---------~sli~ 124 (311)
.|.--|+-|||+++.||+..--.--+.+...| .+.+++.- ...++.+.++-=..||+- +..+.
T Consensus 381 ~~~PGStfKp~~~~aALe~g~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~g~itl~~Al~~S~N~~~~~~a~~~~ 456 (680)
T 2wad_A 381 VFVPGSVVKAATISSGWENGVLSGNQTLTDQPIVFQGSAPIYSW----YKLAYGSFPITAVEALEYSSNAYVVQTALGIM 456 (680)
T ss_dssp CBCCGGGGHHHHHHHHHHTTSCCSSCCEEECCBCBTTSCCBCCT----TTTTTCSEEECHHHHHHHTCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC----CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
T ss_conf 35787521678899999708999873571378422368864210----13677887720563645075599999998750
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC--CCHHHHHHHHHH
Q ss_conf ----------88888999999999999872899862478999985112412799999998278888--998999999998
Q gi|254780186|r 125 ----------GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR--YKIEDVLKFYFH 192 (311)
Q Consensus 125 ----------~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~~t~~rN~ala~~Lk~~g~~~--~dv~~~Ld~Yf~ 192 (311)
+....+..++++.++++++--+.+..+|- -.|. .|.++ .+..+.+..-+-
T Consensus 457 ~~~~~~~~~~~~~~~~~g~~kl~~~~~~~G~~~~~~i~l---p~E~---------------~G~~~~~~~~~~~~~~~~G 518 (680)
T 2wad_A 457 GQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDL---PDES---------------TGLVPKEYNFANFITNAFG 518 (680)
T ss_dssp TCCCCTTBCCCCTTHHHHHHHHHHHHHHTTSSSCCCCSS---SCCC---------------CCBCCSSCCHHHHHHHTTT
T ss_pred CCCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCC---------------CCCCCCCCCCCCCCCCCCC
T ss_conf 244540333042678765468899999709986568866---5445---------------6767752333322322357
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCC--CCC-------------------------CCEECCHHHHHHHHHHHHHC--CCC-
Q ss_conf 730000799999999998259707--778-------------------------87551899997755445411--331-
Q gi|254780186|r 193 QCSLMMNCVQLAKSGLYLAFRGYN--SLT-------------------------NQSVISPLQSRCVNAVMLTC--GHY- 242 (311)
Q Consensus 193 ~Csi~~t~~dLA~~~a~LAn~G~~--P~t-------------------------~~~vi~~~~~~~v~s~M~Tc--GmY- 242 (311)
| .+.+|.-+||.+.+++||+|+- |.- .+++++++++..+...|... |..
T Consensus 519 q-g~~vTPlqma~aya~iaN~G~~~~P~~v~~I~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~m~~Vv~gt~~ 597 (680)
T 2wad_A 519 Q-FDNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTSP 597 (680)
T ss_dssp S-SSBBCHHHHHHHHHHHHTTTEEECCBSEEEEEEECTTSSEEEEEEECCCCEEEECSSCHHHHHHHHHHHHHHHHCCST
T ss_pred C-CCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 7-677899999999999975975972089998744777555673012368752465679999999999999998728786
Q ss_pred HHHHHHHH-H--HCCCCCCCCC------C------EEEEEECC---CCEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 25667898-7--0787156522------1------10334378---51799875320778984899999999999
Q gi|254780186|r 243 DHSGDFAY-R--VGFPGKSGVG------G------GILAIVPS---KASIAVWSPGLDNSGNSLLGAKALELLAI 299 (311)
Q Consensus 243 d~SG~fa~-~--VGlPaKSGVg------G------gilavvPg---~~gIav~SP~LD~~GNSv~G~~~le~ls~ 299 (311)
..+|.-.. . +-+-+|+|-+ | =.++-.|- +..|+||-|.=...|.++++ .+.+.+.+
T Consensus 598 ~gt~~~~~~~~~~~vaGKTGTAq~~~~~~~~~~~awFvGy~P~~~P~~~v~V~v~~~~~~g~~~A~-~i~~~i~~ 671 (680)
T 2wad_A 598 LTTGRAFSDGATVSISGKTGTGESYVAGGQEATNTNAVAYAPTENPQIAVAVVFPHNTNLTKNVGP-AIARDIIN 671 (680)
T ss_dssp TCCCGGGTTTCSSCCEEEECC------------CCCEEEEESTTSCCEEEEEECTTCCCCSCCHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHH-HHHHHHHH
T ss_conf 634563215799889998434352579998667089999997689869999999689953888999-99999999