HHSEARCH alignment of GI: 254780186 and SCOP domain: d1u60a_

Alignment
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=897.04  Aligned_cols=304  Identities=37%  Similarity=0.617  Sum_probs=296.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-HH
Q ss_conf             97999999999997760799999828332059824702899808997887668786401999999999999996112-89
Q gi|254780186|r    2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIALRKFD-EE   80 (311)
Q Consensus         2 d~~~~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiqSisK~f~l~~al~~~G-~~   80 (311)
                      +++++|+++++++|+. .+||||||||+||+|||++|||||||+||++|++||++++||||||||||+|++||+++| |+
T Consensus         5 ~l~~~l~~~~~~~~~~-~~GkvA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~F~iqSisK~f~~~lal~~~G~~~   83 (309)
T d1u60a_           5 KLQQAVDQAYTQFHSL-NGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQA   83 (309)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCBCCCSSHHHHTSCTTCCEEEEEETTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHCCC-CCCCCCCCCHHHCCCCHHHEEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHH
T ss_conf             9999999999981548-999788726775088827839999957991895588288660899999999999997679899


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             99994657656772044420114898476311137999998644888889999999999998728998624789999851
Q gi|254780186|r   81 IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEI  160 (311)
Q Consensus        81 V~~~VG~ePSg~~FNSi~~Le~~~g~P~NPmiNAGAI~~~sli~~~~~~~~~~~~i~~~~~~lag~~~i~~d~~v~~SE~  160 (311)
                      ||+|||+||||++|||+++||.++|+|||||||||||++||||.++ ..++||+++++|+++++| +++.+|++||+||+
T Consensus        84 v~~~VG~EPSg~~FNsl~~le~~~g~P~NPmINAGAI~~~sli~~~-~~~~r~~~i~~~~~~~~g-~~l~~d~~v~~SE~  161 (309)
T d1u60a_          84 VQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATTSLINAE-NVEQRWQRILHIQQQLAG-EQVALSDEVNQSEQ  161 (309)
T ss_dssp             HHHHTCSCCCSSCTTCHHHHHHTTTCCCCTTSHHHHHHHHHHSCCS-SHHHHHHHHHHHHHHHHC-TTCEECHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHH
T ss_conf             9998576877788631665203699978952111088987754168-837999999999999649-98745889999987


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCC
Q ss_conf             12412799999998278888998999999998730000799999999998259707778875518999977554454113
Q gi|254780186|r  161 ETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCG  240 (311)
Q Consensus       161 ~t~~rN~ala~~Lk~~g~~~~dv~~~Ld~Yf~~Csi~~t~~dLA~~~a~LAn~G~~P~t~~~vi~~~~~~~v~s~M~TcG  240 (311)
                      +|++||||||||||++|+|++||+++||+||||||+++||+|||+||+||||+|+||+|++|+++++++|+++++|+|||
T Consensus       162 ~t~~rN~Ala~~lk~~g~~~~d~~~~Ld~Yf~~CSi~vt~~dlA~~aatLAN~Gv~P~tg~~v~~~~~~r~vls~M~tcG  241 (309)
T d1u60a_         162 TTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEG  241 (309)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTEEECHHHHHHHHHHHHTTSEETTTTEECSCGGGHHHHHHHHHHHT
T ss_pred             HCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHCC
T ss_conf             42559999999999769988899999999999855560299999999999759938888872437899999999887547


Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             31256678987078715652211033437851799875320778984899999999999948656486
Q gi|254780186|r  241 HYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSIFDP  308 (311)
Q Consensus       241 mYd~SG~fa~~VGlPaKSGVgGgilavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~l~l~iF~~  308 (311)
                      |||+||+|+|+||||||||||||||+||||+||||||||+||++||||||+++||.|+++|+||+|+.
T Consensus       242 mYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~~~l~iF~g  309 (309)
T d1u60a_         242 LYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQLGYNVFKG  309 (309)
T ss_dssp             TGGGHHHHHHHTCSCEEECTTSEEEEEETTTEEEEEECSCBCTTSCBHHHHHHHHHHHHHHTCCTTCC
T ss_pred             CCCCCCCHHHEECCEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             75340013650574031277860799947960799988877888887999999999999838232489


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: Glutaminase
domain: Probable glutaminase YbaS
species: Escherichia coli [TaxId: 562]