RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus
Liberibacter asiaticus str. psy62]
(311 letters)
>3czd_A Glutaminase kidney isoform; glutamine, glutamate, K-glutaminase,
SGC, structural genomics consortium, alternative
splicing, ANK repeat, hydrolase; HET: GLU; 2.40A {Homo
sapiens}
Length = 315
Score = 404 bits (1040), Expect = e-113
Identities = 110/310 (35%), Positives = 163/310 (52%), Gaps = 6/310 (1%)
Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60
M ID +YE K Q G G+VADYIP+LAK D +G+S+ DG +S G+++ F
Sbjct: 7 MSFTSHIDELYESAKKQSG-GKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFC 65
Query: 61 IQSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119
+QS K IA+ E + + VG+EPSG F+ + E+ P NP VNAGAIVV
Sbjct: 66 LQSCVKPLKYAIAVNDLGTEYVHRYVGKEPSGLRFNKLFLNED--DKPHNPMVNAGAIVV 123
Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
+ + + + + + F+ +AG+ + + SE E+G RNFA+ +++
Sbjct: 124 TSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQSERESGDRNFAIGYYLKEKKCF 183
Query: 180 RYK--IEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVML 237
+ +L FYF CS+ + C + LA G+ +T + V+SP R ++M
Sbjct: 184 PEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMH 243
Query: 238 TCGHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELL 297
+CG YD SG FA+ VG P KSGV GGIL +VP+ + WSP LD GNS+ G L
Sbjct: 244 SCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDL 303
Query: 298 AIRTGWSIFD 307
+ +D
Sbjct: 304 VSLCNFHNYD 313
>3ih8_A Salt-tolerant glutaminase; hydrolase; 2.30A {Micrococcus luteus}
PDB: 3if5_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 394 bits (1013), Expect = e-110
Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%)
Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61
+ + + E+ + G A YIP LA+ D FG++LA G ++ G+++ F+I
Sbjct: 4 PIPDYLASLVTELGA-VNPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTI 62
Query: 62 QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120
QS SK F AL + ++VG PSG +F+ + LE E+ P N +NAGA+ V
Sbjct: 63 QSASKPFTYAAALVDRGFAAVDRQVGLNPSGEAFNEL-SLEAESHRPDNAMINAGALAVH 121
Query: 121 DAVLGS-SSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
++G +S + ++ + M +AG + +D SE+ RN +LA+ +RSYG +
Sbjct: 122 QLLVGPEASRKERLDRAVEIMSLLAGR-RLSVDWETYESEMAVSDRNLSLAHMLRSYGVL 180
Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
+ E+++ Y QC++++ LA G LA G + +T + ++ + +R V +VM +
Sbjct: 181 QDSAEEIVAGYVAQCAVLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSS 240
Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
G YD +G + VG P KSGV GG+L +P + I V+SP LD GNS G A L+
Sbjct: 241 GMYDAAGQWLADVGIPAKSGVAGGVLGALPGRVGIGVFSPRLDEVGNSARGVLACRRLSE 300
Query: 300 RTGWSIFDPS 309
+ D
Sbjct: 301 DFRLHLMDGD 310
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
structure initiative; 2.07A {Geobacillus kaustophilus
HTA426}
Length = 308
Score = 390 bits (1004), Expect = e-109
Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 2/307 (0%)
Query: 1 MDLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFS 60
+ ++ + EE K G+VADYIP L K + +++ D V S G+ +
Sbjct: 3 VYNQEELVRFVEEAKQYARYGKVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVT 62
Query: 61 IQSISKVFLLTIALRKFDEE-IWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVV 119
+QSISK+ L + L E+ ++ +VG EP+ F SI +LE + P NP +NAGA+VV
Sbjct: 63 LQSISKIIALALVLIDRGEDEVFHKVGMEPTDYPFHSIAKLEEKPAKPLNPMINAGALVV 122
Query: 120 SDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNI 179
+ + G S + +E L F+R +AG+ I VA SE ET + N +L F++ + I
Sbjct: 123 TSMIQGGS-VSERLERLLAFVRRLAGNERISYSDEVARSEFETAFLNRSLCYFLKQHRII 181
Query: 180 RYKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTC 239
+E++++ Y QC++ M C+ LA+ GL LA G + +++ ++ +R M+TC
Sbjct: 182 DEDVEELMELYTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTC 241
Query: 240 GHYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAI 299
G Y+ SG+FA +VG P KSGV GGILA VP + I V+ P LD+ GNSL G K LE L+
Sbjct: 242 GMYNSSGEFAIKVGIPAKSGVSGGILAAVPGRCGIGVFGPALDDKGNSLTGVKLLERLSK 301
Query: 300 RTGWSIF 306
SIF
Sbjct: 302 TYSLSIF 308
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.61A {Escherichia coli}
SCOP: e.3.1.2
Length = 310
Score = 382 bits (984), Expect = e-107
Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 4/307 (1%)
Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61
L++ +D Y + + G+ ADYIP LA V +++ DG VYS G+S++ F++
Sbjct: 6 KLQQAVDQAYTQFHS-LNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFAL 64
Query: 62 QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120
+SISKV L +AL + + ++G +P+G F+S++ LE G P +P VNAGAI +
Sbjct: 65 ESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATT 124
Query: 121 DAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR 180
++ + + + + L+ + +AG+ + + V SE T + N A+A + S G +
Sbjct: 125 S-LINAENVEQRWQRILHIQQQLAGE-QVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLY 182
Query: 181 YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCG 240
+ Y QCS ++N ++LA G LA G N LT++ V+ + A M+ G
Sbjct: 183 CDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEG 242
Query: 241 HYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIR 300
Y SGD+AYRVG PGKSGVGGGILA+VP IA +SP LD GNS+ G K + +A +
Sbjct: 243 LYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQ 302
Query: 301 TGWSIFD 307
G+++F
Sbjct: 303 LGYNVFK 309
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A*
Length = 330
Score = 377 bits (970), Expect = e-105
Identities = 110/312 (35%), Positives = 164/312 (52%), Gaps = 14/312 (4%)
Query: 7 IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66
+ E +P G+ A+YIP L KV G+ + DGT+ G+ F++QSISK
Sbjct: 21 LHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISK 80
Query: 67 VFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLE-NENGIPRNPFVNAGAIVVSDAVL 124
V A + RV EP+G +F+SI++LE N+ G P NP +NAGA+ ++ +
Sbjct: 81 VISFIAACMSRGIPYVLDRVDVEPTGDAFNSIIRLEINKPGKPFNPMINAGALTIASILP 140
Query: 125 GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE 184
G S A + +E + M + G I V SE ET +RN ALA +++ + ++E
Sbjct: 141 GES-AYEKLEFLYSVMETLIGK-RPRIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVE 198
Query: 185 DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDH 244
+ L+ Y QC++ +A GL LA GY+ + ++ VI ++ A+MLTCG Y+
Sbjct: 199 ETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNA 258
Query: 245 SGDFAYRVGFPGKSGVGGGILAIVPSKA----------SIAVWSPGLDNSGNSLLGAKAL 294
SG +A VG P KSGV GGI+A+VP A I ++ P +D GNSL G L
Sbjct: 259 SGKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLL 318
Query: 295 ELLAIRTGWSIF 306
+ +A SIF
Sbjct: 319 KHMAQEWELSIF 330
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 62.3 bits (151), Expect = 1e-10
Identities = 58/381 (15%), Positives = 101/381 (26%), Gaps = 174/381 (45%)
Query: 41 SLALEDGTVYSVGESEFLFSIQSISKVFLLTIALR-KFDEEIWKRVGREPSGSSFDSIVQ 99
L L G++ E + + + F+ + L+ +F++ + EP+ +
Sbjct: 8 PLTLSHGSL------EHVLLV-PTASFFIAS-QLQEQFNKIL-----PEPT----EGFAA 50
Query: 100 LENENGIPRNP------FVNAGAIVVSDAV--LGSSSADDAIENFLN-----FMRGIAGD 146
++E P P F+ VS V D + L ++ G
Sbjct: 51 -DDE---PTTPAELVGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--- 99
Query: 147 ASIHIDSVVAN--SEIETGYRNFALANFVRSYGNIRYKIEDVLKFYFHQC---------- 194
IH ++ A E +T K ++++K Y
Sbjct: 100 -DIH--ALAAKLLQENDTTLV----------------KTKELIKNYITARIMAKRPFDKK 140
Query: 195 --SLMMNCVQLAKSGLYLAFRG--------------YNSLTNQSVISPLQSRCVNAVML- 237
S + V + L F G Y T ++ L A L
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFS--AETLS 196
Query: 238 --------TCGHYDHSGD-------------------------------FA-YRV----- 252
+ + A Y V
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 253 GF-PGK-----SGVGG---GIL-AIVPSKASIAV---WSPGLDNSGNSLLGAKALELLAI 299
GF PG+ G G G++ A+ IA W + KA+ +L
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVA-----IAETDSWESFFVSV------RKAITVL-F 304
Query: 300 RTGW---------SIFDPSVI 311
G S+ PS++
Sbjct: 305 FIGVRCYEAYPNTSL-PPSIL 324
Score = 52.6 bits (126), Expect = 1e-07
Identities = 72/428 (16%), Positives = 121/428 (28%), Gaps = 203/428 (47%)
Query: 19 GQGRVADYIPELAKV----------------------------RIDHF--GMSLA--LED 46
GQG DY EL + F G+++ LE+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 47 GTVYSVGESEFLFSIQSISKVFLLTIALRKFDEEIWKRV-----GREP-------SGSSF 94
+ + + ++L SI IS L I + + V G P G++
Sbjct: 222 PS--NTPDKDYLLSI-PIS--CPL-IGVIQL---AHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 95 DSIVQLENENGIPRNPFVNAGAIVVSD-----------AV------------------LG 125
S Q G+ V A AI +D A+ L
Sbjct: 273 HS--Q-----GL-----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 126 SSSADDAIEN-------FLNFMRGIAGDASI-----HIDSVVANSEI-ET---------G 163
S +D++EN L+ + + + +++ NS + G
Sbjct: 321 PSILEDSLENNEGVPSPMLS-ISNL----TQEQVQDYVNKT--NSHLPAGKQVEISLVNG 373
Query: 164 YRNFALANFVRS-YG-----------------NIRY---KIEDVLKFY-----FHQCSLM 197
+N ++ +S YG I + K++ +F FH L+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLL 432
Query: 198 MNCVQLAKSGL---YLAFRG-------YNSLTNQSVISPLQSRCVNAV-----MLTCGHY 242
+ L L ++F Y++ L+ + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVDCIIRLPV 488
Query: 243 D----------HSGDFAYRVGFPGK-SGVG--------G-GILAIVPSKASIAVWSPGLD 282
H DF G PG SG+G G G+ IV A LD
Sbjct: 489 KWETTTQFKATHILDF----G-PGGASGLGVLTHRNKDGTGVRVIV---AG------TLD 534
Query: 283 NSGNSLLG 290
+ + G
Sbjct: 535 INPDDDYG 542
Score = 33.0 bits (75), Expect = 0.082
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 50/144 (34%)
Query: 1 MDLKKIIDGI-YEEIKPQIGQGRVADYIP--ELAKVRIDHFGMSLALEDGTVYSVGESEF 57
M ++ +++ + Y + Q+ +P EL + ++GM +A+ G V +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVA-------VPRDELGR---SNYGM-IAINPGRVAAS----- 1820
Query: 58 LFSIQSISKVFLLTIALRKFDEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAI 117
FS +++ V E + KR G +V++ N N + +V AG +
Sbjct: 1821 -FSQEALQYVV----------ERVGKRTGW---------LVEIVNYN-VENQQYVAAGDL 1859
Query: 118 VVSDAVLGSSSADDAIENFLNFMR 141
A D + N LNF++
Sbjct: 1860 ----------RALDTVTNVLNFIK 1873
Score = 29.5 bits (66), Expect = 1.0
Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 73/188 (38%)
Query: 12 EEIKPQIG--QGRVADYIP--ELAKVRIDH--------F-------GMSLALEDGTVYSV 52
+ K G Q R IP E K++ + F L +D +
Sbjct: 394 RKAKAPSGLDQSR----IPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKD-----L 443
Query: 53 GESEFLFSIQSISKVFLLTIALRKFDEEIWKRVG---REPSGSSFDSIVQLENENGIPRN 109
++ F+ + + I + +D G R SGS + IV I R
Sbjct: 444 VKNNVSFNAKD------IQIPV--YD----TFDGSDLRVLSGSISERIVDC-----IIRL 486
Query: 110 PFVNAGAIVVSDA--VL----GSSSADDAIENFLNFMR---GI----AGDASIHIDSVVA 156
P V A +L G +S + + + G+ AG +D
Sbjct: 487 P-VKWETTTQFKATHILDFGPGGAS---GLGVLTHRNKDGTGVRVIVAGT----LDI--- 535
Query: 157 NSEIETGY 164
N + + G+
Sbjct: 536 NPDDDYGF 543
Score = 29.5 bits (66), Expect = 1.1
Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 77/221 (34%)
Query: 125 GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYR---NFALANFVRSYGNIRY 181
G S D I N +N +IH E G R N++ A + + +
Sbjct: 1658 GFSILDIVINNPVNL--------TIHFGG-------EKGKRIRENYS-AMIFETIVDGKL 1701
Query: 182 KIEDVLK--------FYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSR-CV 232
K E + K + F +++ Q + L +L ++ L+S+ +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--------TLMEKAAFEDLKSKGLI 1753
Query: 233 NAVMLTCGHYDHSGDFA-------------------YR-----VGFP----GKSGVGGGI 264
A GH G++A YR V P G+S G +
Sbjct: 1754 PADATFAGH--SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG--M 1809
Query: 265 LAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIRTGWSI 305
+AI P + + + L +E + RTGW +
Sbjct: 1810 IAINPGRVAASFSQEALQ---------YVVERVGKRTGWLV 1841
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 35.8 bits (81), Expect = 0.011
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 207 GLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILA 266
G++ G ++L +I P + ++ ++++ H DH G + F K+ G
Sbjct: 42 GIHPGLEGMDALPYIDLIDPAE---IDLLLISHFHLDHCGALPW---FLQKTSFKGRTFM 95
Query: 267 IVPSKA 272
+KA
Sbjct: 96 THATKA 101
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 2.20A
{Mycobacterium bovis}
Length = 280
Score = 30.5 bits (68), Expect = 0.55
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 46 DGTVYSVGESEFLFSIQSISKVFLLTIALRKFDE 79
G + + G++ +F++ S++K + A +E
Sbjct: 23 AGVLATHGDTARVFALASVTKPLVARAAQVAVEE 56
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (66), Expect = 0.75
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 145 GDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFYF--H----QCSLMM 198
G AS H S AN + E+ N + + RS GN + V + + H + MM
Sbjct: 1338 GVASFHGTSTKANDKNESATINEMMKHLGRSEGN---PVIGVFQKFLTGHPKGAAGAWMM 1394
Query: 199 N-CVQLAKSGLYLAFRGYNSLTN-----QSVISP---LQSRCVNAVMLTCGHYDHSG 246
N +Q+ SG+ R +++ + V+ P L++ V AV +T + G
Sbjct: 1395 NGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKG 1451
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 28.5 bits (63), Expect = 1.8
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 232 VNAVMLTCGHYDHSGDFAYRV-GFPGKSGVGGGILAIVPSKA 272
++ ++L+ + G + F + A +P
Sbjct: 54 IDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVIN 95
>3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel,
synthase, biosynthetic protein, transferase; 3.02A
{Saccharomyces cerevisiae}
Length = 297
Score = 28.5 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AKVRI HF + +E V + ESE L
Sbjct: 75 IPVMAKVRIGHFVEAQIIEALEVDYIDESEVL 106
>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
fold, structural genomics, NPPSFA; HET: FLC; 2.50A
{Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 28.4 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 232 VNAVMLTCGHYDHSGDFAY--RVGFPGK 257
V+AV+LT H DH G R G+ G
Sbjct: 52 VDAVLLTHAHLDHVGRLPKLFREGYRGP 79
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A
Length = 394
Score = 27.8 bits (61), Expect = 3.1
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 70 LTIALRKFDEEIWKRVGREPSGSS------FDSIVQLENENGIPRNPFVNAGAIVVSDAV 123
+T+ LR + + R P+ F V+ ++ N + AGAI+V
Sbjct: 25 VTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGS 84
Query: 124 LGSSSADDAI 133
++ D I
Sbjct: 85 WKTAPRDRII 94
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 27.8 bits (61), Expect = 3.5
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 226 PLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSG 259
L+ ++A+++T H DH G Y + G
Sbjct: 243 VLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDG 276
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
structural genomics, NPPSFA; 1.43A {Pyrococcus
horikoshii OT3} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 27.4 bits (60), Expect = 3.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 1 MDLKKIIDGIYEEIKPQIGQGRV 23
MD + ++ EI+ +G +
Sbjct: 1 MDWGRFVEEKVREIRETVGDSKA 23
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase;
2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Length = 305
Score = 27.5 bits (61), Expect = 4.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 27 IPELAKVRIDHFGMSLALEDGTVYSVGESEFL 58
IP +AK RI H + LE V + ESE L
Sbjct: 79 IPVMAKARIGHIVEARVLEAMGVDYIDESEVL 110
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 27.5 bits (60), Expect = 4.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 219 TNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYR 251
T V+ P R ++AV+ T H DH
Sbjct: 97 TTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAA 129
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding domain, 37 amino acid insertional region;
HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV}
PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 27.2 bits (60), Expect = 5.0
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 9/139 (6%)
Query: 116 AIVVSDAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRS 175
AI V+D+V S D+ + + GI I G A ++
Sbjct: 238 AINVNDSVT-KSKFDNKYGTRHSLIDGINRGTDALIGGKKVLI-CGYGDVGKGCAEAMKG 295
Query: 176 YGN--IRYKIEDV--LKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRC 231
G +I+ + L+ ++ + + + + G + I ++
Sbjct: 296 QGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKD-- 353
Query: 232 VNAVMLTCGHYDHSGDFAY 250
+A++ GH+D+ D A
Sbjct: 354 -HAILGNIGHFDNEIDMAG 371
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic
resistance, hydrolase, periplasm; 2.26A {Pseudomonas
fluorescens}
Length = 358
Score = 26.9 bits (58), Expect = 5.5
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELA-------KVRIDHFGMSLALEDGTVYSVGE 54
D+++++D ++P + Q I L+ K + ++G++ + +
Sbjct: 3 DIRQVVDST---VEPLMQQQD----IAGLSVAVIQNGKAQYFNYGVA-NKDSKQPIT--- 51
Query: 55 SEFLFSIQSISKVFLLTIALR 75
LF I S+SK F T+A
Sbjct: 52 ENTLFEIGSVSKTFTATLAGY 72
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis,
beta-lactam, beta-sultam, sulfonylation, hydrolase;
HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB:
1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A*
1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Length = 349
Score = 27.1 bits (58), Expect = 6.0
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 13/59 (22%)
Query: 39 GMSLAL-EDGTVYSVG------------ESEFLFSIQSISKVFLLTIALRKFDEEIWKR 84
G + + ++GT++ + + F + S++K F + L+ DE
Sbjct: 25 GAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDL 83
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
d.157.1.10
Length = 429
Score = 26.9 bits (58), Expect = 6.5
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 232 VNAVMLTCGHYDHSGDFAY 250
AV L+ H DHS Y
Sbjct: 85 HTAVFLSHAHLDHSRMINY 103
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,759,151
Number of extensions: 125323
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 33
Length of query: 311
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 219
Effective length of database: 3,462,782
Effective search space: 758349258
Effective search space used: 758349258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)