RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780186|ref|YP_003064599.1| glutaminase [Candidatus
Liberibacter asiaticus str. psy62]
(311 letters)
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 386 bits (994), Expect = e-109
Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 4/307 (1%)
Query: 2 DLKKIIDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSI 61
L++ +D Y + + G+ ADYIP LA V +++ DG VYS G+S++ F++
Sbjct: 5 KLQQAVDQAYTQFHS-LNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFAL 63
Query: 62 QSISKVFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLENENGIPRNPFVNAGAIVVS 120
+SISKV L +AL + + ++G +P+G F+S++ LE G P +P VNAGAI +
Sbjct: 64 ESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATT 123
Query: 121 DAVLGSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIR 180
++ + + + + L+ + +AG+ + + V SE T + N A+A + S G +
Sbjct: 124 S-LINAENVEQRWQRILHIQQQLAGE-QVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLY 181
Query: 181 YKIEDVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCG 240
+ Y QCS ++N ++LA G LA G N LT++ V+ + A M+ G
Sbjct: 182 CDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEG 241
Query: 241 HYDHSGDFAYRVGFPGKSGVGGGILAIVPSKASIAVWSPGLDNSGNSLLGAKALELLAIR 300
Y SGD+AYRVG PGKSGVGGGILA+VP IA +SP LD GNS+ G K + +A +
Sbjct: 242 LYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEDGNSVRGQKMVASVAKQ 301
Query: 301 TGWSIFD 307
G+++F
Sbjct: 302 LGYNVFK 308
>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 328
Score = 372 bits (957), Expect = e-104
Identities = 108/312 (34%), Positives = 161/312 (51%), Gaps = 14/312 (4%)
Query: 7 IDGIYEEIKPQIGQGRVADYIPELAKVRIDHFGMSLALEDGTVYSVGESEFLFSIQSISK 66
+ E +P G+ A+YIP L KV G+ + DGT+ G+ F++QSISK
Sbjct: 19 LHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISK 78
Query: 67 VFLLTIALRKF-DEEIWKRVGREPSGSSFDSIVQLE-NENGIPRNPFVNAGAIVVSDAVL 124
V A + RV EP+G +F+SI++LE N+ G P NP +NAGA+ ++ +
Sbjct: 79 VISFIAACMSRGIPYVLDRVDVEPTGDAFNSIIRLEINKPGKPFNPMINAGALTIASILP 138
Query: 125 GSSSADDAIENFLNFMRGIAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIE 184
G S+ + FL + I V SE ET +RN ALA +++ + ++E
Sbjct: 139 GESAYE--KLEFLYSVMETLIGKRPRIHEEVFRSEWETAHRNRALAYYLKETNFLEAEVE 196
Query: 185 DVLKFYFHQCSLMMNCVQLAKSGLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDH 244
+ L+ Y QC++ +A GL LA GY+ + ++ VI ++ A+MLTCG Y+
Sbjct: 197 ETLEVYLKQCAMESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNA 256
Query: 245 SGDFAYRVGFPGKSGVGGGILAIVPSKA----------SIAVWSPGLDNSGNSLLGAKAL 294
SG +A VG P KSGV GGI+A+VP A I ++ P +D GNSL G L
Sbjct: 257 SGKYAAFVGVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLL 316
Query: 295 ELLAIRTGWSIF 306
+ +A SIF
Sbjct: 317 KHMAQEWELSIF 328
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 35.5 bits (80), Expect = 0.005
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 207 GLYLAFRGYNSLTNQSVISPLQSRCVNAVMLTCGHYDHSGDFAYRVGFPGKSGVGGGILA 266
G++ G ++L +I P + ++ ++++ H DH G + F K+ G
Sbjct: 34 GIHPGLEGMDALPYIDLIDPAE---IDLLLISHFHLDHCGALPW---FLQKTSFKGRTFM 87
Query: 267 IVPSKA 272
+KA
Sbjct: 88 THATKA 93
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 28.4 bits (62), Expect = 0.84
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 232 VNAVMLTCGHYDHSGDFAY--RVGFPGK 257
V+AV+LT H DH G R G+ G
Sbjct: 52 VDAVLLTHAHLDHVGRLPKLFREGYRGP 79
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 27.9 bits (61), Expect = 1.0
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 232 VNAVMLTCGHYDHSGDFAYRV-GFPGKSGVGGGILAIVPSKA 272
++ ++L+ + G + F + A +P
Sbjct: 54 IDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVIN 95
>d1yqsa1 e.3.1.1 (A:3-347) D-ala carboxypeptidase/transpeptidase
{Streptomyces sp., R61 [TaxId: 1931]}
Length = 345
Score = 26.3 bits (56), Expect = 3.0
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 39 GMSLAL-EDGTVYSVG------------ESEFLFSIQSISKVFLLTIALRKFDEEIW 82
G + + ++GT++ + + F + S++K F + L+ DE
Sbjct: 23 GAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKL 79
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 26.3 bits (56), Expect = 3.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 227 LQSRCVNAVMLTCGHYDH 244
L+ +NA++L DH
Sbjct: 76 LRDTGINAIVLLDSQIDH 93
>d1ogla_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 270
Score = 26.0 bits (56), Expect = 4.3
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 28 PELAKVRID-----HFGMSLALEDGTVYSVGESEFLFSIQSISKVFLLTIAL 74
++ VRI+ HF +S ++ T G + F A
Sbjct: 61 TDMHNVRIEIADILHFSLSGEIQKRTQDEKGADDVALKSLKEMGFFCRPPAH 112
>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 25.9 bits (56), Expect = 5.0
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 143 IAGDASIHIDSVVANSEIETGYRNFALANFVRSYGNIRYKIEDVLKFY 190
+ A + D V + G+ A FV+ Y ++ ++ Y
Sbjct: 201 VGIGAGPNCDGQVLVWQDMAGFSGAKTARFVKRYADVGGELRRAAMQY 248
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 25.5 bits (56), Expect = 5.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 276 VWSPGLDNSGNSLLGAKALEL-LAIRTGW 303
+ S G GNSLLG K L +A R
Sbjct: 219 IISFGSGYGGNSLLGKKCFALRMASRLAK 247
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 25.5 bits (56), Expect = 6.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 192 HQCSLMMNCVQLAKSG 207
HQ +M ++LAKS
Sbjct: 64 HQTIVMQFILELAKSL 79
>d2i1sa1 d.343.1.1 (A:4-188) Hypothetical protein MM3350
{Methanosarcina mazei [TaxId: 2209]}
Length = 185
Score = 25.0 bits (54), Expect = 8.4
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 63 SISKVFLLTIALRKFDEEIWKRVGREPSGSSFD 95
+ KV+ L ++++ +IW+R+ + P +F
Sbjct: 1 TFEKVYHLKLSIKGITPQIWRRI-QVPENYTFL 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,192,146
Number of extensions: 54672
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 16
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)