HHsearch alignment for GI: 254780187 and conserved domain: COG0522
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=427.33 Aligned_cols=202 Identities=44% Similarity=0.704 Sum_probs=188.7
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCC-CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9764487123520058888888877-000136899877654433413589999998848555156547999999987530
Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR 79 (206)
Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~~k~-~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~ 79 (206)
T Consensus 1 M~r~~~~~~K~~rr~g~~~~~~~~~~~~~~~~~~pGqhk~~~~~k~s~yg~qL~ekqkl~~~yg-~~ekqf~~~l~~a~~ 79 (205)
T COG0522 1 MARYPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLRAFYG-VLEKQFRRYLKEAGR 79 (205)
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHC
T ss_conf 9987673204210068776777778877612788564621677799999999999777652023-779999999999705
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 33443026899999888889986212124788788762497878888941353483388478861100226999987752
Q gi|254780187|r 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 (206)
Q Consensus 80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~ 159 (206)
T Consensus 80 l~g~~~~~~~~~LErRLd~vVyR~GfA~T~~qARQlV~HGHI~VnGk~V~iPSy~V~~gdei~V~~k~~s~~~~~~~~~~ 159 (205)
T COG0522 80 LKGVTGLNLLALLERRLDNVVYRLGFAKTRRQARQLVSHGHILVNGKRVNIPSYLVSPGDEISVREKSKSPIKIKEALEL 159 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 57708889999999887899998404135999998840662899999952673796377788752034542555554653
Q ss_pred C--CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 1--6899962788124318999967884211246753466316775049
Q gi|254780187|r 160 A--ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206)
Q Consensus 160 ~--~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206)
T Consensus 160 ~~~~~~~~~~~e~d~~~~~~~~~~~p~~~~---~~~~~~e~~ive~ys~ 205 (205)
T COG0522 160 AAQRGIPPAWLEVDEEKLEGTFKRLPERSD---LPAPINEQLIVEFYSK 205 (205)
T ss_pred HHHCCCCHHHHHCCHHHHCEEEEECCCCCC---CCCCCCHHEEEEEECC
T ss_conf 310147604542453330033100784001---6888781048851329