HHsearch alignment for GI: 254780187 and conserved domain: COG1187
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].
Probab=97.08 E-value=0.0013 Score=44.09 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCC-EEEECCH
Q ss_conf 98888899862121247887887624978788889413534833884-7886110
Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD-VIEVKQK 146 (206)
Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd-~I~~~~k 146 (206)
T Consensus 2 ~~RL~K~La~~G~~-SRr~ae~lI~~G~V~VnG~v~~~~~~~v~~~~~~i~v~g~ 55 (248)
T COG1187 2 SMRLNKFLAEAGVG-SRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGK 55 (248)
T ss_pred CCCHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEEECCCCEEECCCCCEEEECCE
T ss_conf 52068999874777-8899999997398788999922477672798768998998