HHsearch alignment for GI: 254780187 and conserved domain: PRK05327

>PRK05327 rpsD 30S ribosomal protein S4; Validated.
Probab=100.00  E-value=0  Score=538.92  Aligned_cols=201  Identities=51%  Similarity=0.871  Sum_probs=193.8

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             97644871235200588888888770001368998776544334135899999988485551565479999999875303
Q gi|254780187|r    1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS   80 (206)
Q Consensus         1 M~r~~gpk~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~   80 (206)
T Consensus         1 MsRy~GPk~Ki~RRlG~~l~g~~k~~~~rr~~~PGqhG~~r~-k~S~Yg~qL~eKQK~r~~Yg-~~EkQ~~~~~~~A~r~   78 (201)
T PRK05327          1 MARYTGPKCKLSRRLGTDLFGKSKDKLEKRPYPPGQHGQRRK-KLSDYGLQLREKQKLKRIYG-VLEKQFRNYFKEAARR   78 (201)
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC
T ss_conf             986447686730107999788887713368999998887877-65389999999999999829-7799999999998526


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC
Q ss_conf             34430268999998888899862121247887887624978788889413534833884788611002269999877521
Q gi|254780187|r   81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA  160 (206)
Q Consensus        81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~  160 (206)
T Consensus        79 ~G~Tg~~Ll~lLE~RLD~vv~r~g~a~t~~~ARQ~v~Hghi~vNg~~v~ips~~~k~gd~i~vkeks~~~~~v~~~~~~~  158 (201)
T PRK05327         79 KGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALELA  158 (201)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEEEECCEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf             99689999999999988999871410588886200644059989998357874738999999770002459999999705


Q ss_pred             CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             6899962788124318999967884211246753466316775049
Q gi|254780187|r  161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR  206 (206)
Q Consensus       161 ~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR  206 (206)
T Consensus       159 ~~~~P~wL~~d~~~l~g~v~~~P~r-~~--i~~~vne~LVVEyYSr  201 (201)
T PRK05327        159 ERGVPSWLEVDKDKLEGTFKRLPER-SE--IPAPINEQLIVELYSR  201 (201)
T ss_pred             CCCCCCEEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEEECC
T ss_conf             8999985897566788999843687-88--8977772379986149