HHsearch alignment for GI: 254780187 and conserved domain: PRK05327
>PRK05327 rpsD 30S ribosomal protein S4; Validated.
Probab=100.00 E-value=0 Score=538.92 Aligned_cols=201 Identities=51% Similarity=0.871 Sum_probs=193.8
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 97644871235200588888888770001368998776544334135899999988485551565479999999875303
Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 (206)
Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~ 80 (206)
T Consensus 1 MsRy~GPk~Ki~RRlG~~l~g~~k~~~~rr~~~PGqhG~~r~-k~S~Yg~qL~eKQK~r~~Yg-~~EkQ~~~~~~~A~r~ 78 (201)
T PRK05327 1 MARYTGPKCKLSRRLGTDLFGKSKDKLEKRPYPPGQHGQRRK-KLSDYGLQLREKQKLKRIYG-VLEKQFRNYFKEAARR 78 (201)
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC
T ss_conf 986447686730107999788887713368999998887877-65389999999999999829-7799999999998526
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC
Q ss_conf 34430268999998888899862121247887887624978788889413534833884788611002269999877521
Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA 160 (206)
Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~ 160 (206)
T Consensus 79 ~G~Tg~~Ll~lLE~RLD~vv~r~g~a~t~~~ARQ~v~Hghi~vNg~~v~ips~~~k~gd~i~vkeks~~~~~v~~~~~~~ 158 (201)
T PRK05327 79 KGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALELA 158 (201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEEEECCEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99689999999999988999871410588886200644059989998357874738999999770002459999999705
Q ss_pred CCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 6899962788124318999967884211246753466316775049
Q gi|254780187|r 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206)
Q Consensus 161 ~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206)
T Consensus 159 ~~~~P~wL~~d~~~l~g~v~~~P~r-~~--i~~~vne~LVVEyYSr 201 (201)
T PRK05327 159 ERGVPSWLEVDKDKLEGTFKRLPER-SE--IPAPINEQLIVELYSR 201 (201)
T ss_pred CCCCCCEEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEEECC
T ss_conf 8999985897566788999843687-88--8977772379986149