HHsearch alignment for GI: 254780187 and conserved domain: TIGR00478

>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.

Probab=98.34  E-value=5.3e-07  Score=66.11  Aligned_cols=54  Identities=26%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             888899862121247887887624978788889413534833884788611002
Q gi|254780187|r   95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus        95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
T Consensus         1 RLD~lLv~rgl~~sR~~Ak~lI~kG~V~VN~~~v~KP~~~v~~~~~i~l~~~~~   54 (240)
T TIGR00478         1 RLDILLVKRGLVESREKAKRLILKGEVLVNKKKVDKPSALVDKDAKIELVQNPL   54 (240)
T ss_pred             CCHHHHHHHCHHHHHHHHHHHHHCCCEEECCEEECCCCCEECCCCCEEEECCCC
T ss_conf             903677650114578999999873945555765208860441676034414777