HHsearch alignment for GI: 254780187 and conserved domain: pfam01479
>pfam01479 S4 S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Probab=99.21 E-value=8.7e-12 Score=97.13 Aligned_cols=48 Identities=46% Similarity=0.652 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEE
Q ss_conf 888889986212124788788762497878888941353483388478
Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 (206)
Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I 141 (206)
T Consensus 1 ~RLd~~l~~~~~~~Sr~~a~~~I~~G~V~VNg~~v~~~~~~v~~gD~i 48 (48)
T pfam01479 1 MRLDKVLARLGLASSRSEARQLIRHGHVRVNGKVVKDPSYRVKPGDVI 48 (48)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCC
T ss_conf 966799998676148999999998897798999957898688992999