HHsearch alignment for GI: 254780187 and conserved domain: smart00363

>smart00363 S4 S4 RNA-binding domain.
Probab=99.22  E-value=1.2e-11  Score=96.21  Aligned_cols=54  Identities=39%  Similarity=0.576  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf             888889986212124788788762497878888941353483388478861100
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS  147 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks  147 (206)
T Consensus         1 ~RLD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~~~   54 (60)
T smart00363        1 RRLDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKE   54 (60)
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCCC
T ss_conf             978899998387047999999998491798999947898898999999998850