HHsearch alignment for GI: 254780187 and conserved domain: smart00363
>smart00363 S4 S4 RNA-binding domain.
Probab=99.22 E-value=1.2e-11 Score=96.21 Aligned_cols=54 Identities=39% Similarity=0.576 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH
Q ss_conf 888889986212124788788762497878888941353483388478861100
Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 (206)
Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks 147 (206)
T Consensus 1 ~RLD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~~~ 54 (60)
T smart00363 1 RRLDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKE 54 (60)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCCC
T ss_conf 978899998387047999999998491798999947898898999999998850