HHsearch alignment of GI: 254780187 and MMDB domain: 2k6p_A_

>2k6p_A (A:) Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=98.67  E-value=3e-09  Score=80.28  Aligned_cols=54  Identities=24%  Similarity=0.308  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH
Q ss_conf             8888899862121247887887624978788889413534833884788611002
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK  148 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk  148 (206)
                      ||||..+.+.+++.|+.+|+|+|.||+|.|||+++. ||+.|++||+|++.....
T Consensus         1 mRLD~~L~~~~~~~sr~~~~k~i~~g~I~VNg~~~~-~~~~v~~gD~i~i~~~~~   54 (92)
T 2k6p_A            1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISLHYLKG   54 (92)
T ss_dssp             CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECC-TTCBCCTTCEEEECCSSC
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEEE-ECCCCCCCCEEEEEECCC
T ss_conf             967899987277159999999998997998989986-624718999999984896