HHsearch alignment of GI: 254780187 and MMDB domain: 3bbn_D_82-201
>3bbn_D (D:82-201) Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.1e-39 Score=274.00 Aligned_cols=117 Identities=40% Similarity=0.614 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 68999998888899862121247887887624978788889413534833884788611002269999877521-68999
Q gi|254780187|r 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVP 165 (206)
Q Consensus 87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P 165 (206)
.|+++||+|||++|||+|||+|+++|||+|+||||+|||++|++|||+|++||+|++++++++...+..+.+.. ...+|
T Consensus 1 ~ll~~LE~RLD~~l~R~gfa~s~~~ARqlI~hghV~VNg~~v~~ps~~v~~gD~i~~~~~~~~~~~~~~~~~~~~~~~~p 80 (120)
T 3bbn_D 1 VLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELP 80 (120)
T ss_dssp TTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHSSSTTTSCCC
T ss_pred HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCEECCCEEECCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 79998987531035505733576888899987513615489816572546166300100131499999999852658999
Q ss_pred CEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 62788124318999967884211246753466316775049
Q gi|254780187|r 166 EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206)
Q Consensus 166 ~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206)
+||++|+++++|++++.|++.+ +|..+||+||||||||
T Consensus 81 ~~Levd~~~~~~~~~~~P~r~e---i~~~i~e~lVvE~Ysr 118 (120)
T 3bbn_D 81 KHLTLNPFPYKGLVNQIIDSKW---VGLKINELLVVEYYSR 118 (120)
T ss_dssp TTEEEETTTTEEEECSCCCGGG---CCCSCCHHHHTTTSCC
T ss_pred CEEEEECCCCEEEEECCCCHHH---CCCCCCCCEEEEECCC
T ss_conf 8699874448899973777300---8999874479997677