Query gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 206 No_of_seqs 159 out of 1658 Neff 5.4 Searched_HMMs 33803 Date Mon May 23 08:45:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780187.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bbn_D Ribosomal protein S4; 100.0 4.1E-39 1.2E-43 274.0 3.7 117 87-206 1-118 (120) 2 >2vqe_D 30S ribosomal protein 100.0 6.5E-34 1.9E-38 240.3 7.1 94 1-95 1-100 (115) 3 >3i1m_D 30S ribosomal protein 100.0 1.3E-32 3.7E-37 231.9 7.2 94 1-96 1-98 (112) 4 >3i1m_D 30S ribosomal protein 99.9 1.8E-27 5.2E-32 198.5 5.6 93 95-187 1-94 (94) 5 >2vqe_D 30S ribosomal protein 99.9 7.9E-25 2.3E-29 181.3 8.0 93 95-187 1-94 (94) 6 >1s1h_D 40S ribosomal protein 99.9 6.9E-27 2.1E-31 194.7 -2.8 92 87-178 2-97 (99) 7 >1c05_A Ribosomal protein S4 d 99.9 6E-25 1.8E-29 182.1 5.0 83 120-206 1-83 (83) 8 >1c05_A Ribosomal protein S4 d 99.8 2.9E-21 8.5E-26 158.2 5.9 55 65-119 1-55 (55) 9 >2cqj_A BRMS2, U3 small nucleo 99.7 2.7E-19 7.8E-24 145.5 -1.1 64 87-150 1-66 (71) 10 >3hp7_A Hemolysin, putative; s 99.4 4.4E-14 1.3E-18 111.6 1.7 57 92-148 5-63 (65) 11 >1h3f_A Tyrosyl-tRNA synthetas 99.3 1.6E-12 4.7E-17 101.5 2.5 66 85-150 11-76 (83) 12 >1p9k_A ORF, hypothetical prot 99.1 1.5E-12 4.5E-17 101.6 -4.1 71 77-147 4-74 (79) 13 >1vio_A Ribosomal small subuni 99.0 2E-10 6E-15 87.9 4.1 54 92-146 1-54 (57) 14 >1ksk_A Ribosomal small subuni 99.0 4.9E-10 1.4E-14 85.4 4.1 53 93-146 3-55 (58) 15 >1dm9_A Hypothetical 15.5 KD p 98.8 3E-09 9E-14 80.2 4.2 54 92-146 7-60 (133) 16 >2k6p_A Uncharacterized protei 98.7 3E-09 8.8E-14 80.3 0.2 54 94-148 1-54 (92) 17 >3dh3_A Ribosomal large subuni 98.3 5.1E-07 1.5E-11 65.8 4.6 53 93-147 6-58 (63) 18 >1jil_A Tyrrs, tyrosyl-tRNA sy 97.6 3.6E-05 1.1E-09 53.8 3.1 95 48-142 48-155 (174) 19 >2jan_A Tyrosyl-tRNA synthetas 97.6 5.9E-05 1.7E-09 52.4 3.4 49 94-142 12-60 (88) 20 >2ts1_A Tyrosyl-tRNA synthetas 96.9 0.00018 5.2E-09 49.3 0.0 94 48-141 48-154 (174) 21 >3kbg_A 30S ribosomal protein 96.8 0.0015 4.5E-08 43.2 4.5 46 102-147 17-62 (81) 22 >1v9f_A Ribosomal large subuni 95.5 0.0026 7.6E-08 41.8 0.0 55 91-145 14-68 (325) 23 >1v8c_A MOAD related protein; 83.7 0.54 1.6E-05 26.7 1.8 61 79-145 19-82 (84) 24 >2vqe_D 30S ribosomal protein 83.6 0.11 3.3E-06 31.1 -1.8 16 191-206 100-115 (115) 25 >2olw_A Ribosomal large subuni 78.3 0.51 1.5E-05 26.9 0.1 37 109-145 2-38 (119) 26 >3i1m_D 30S ribosomal protein 77.4 0.34 1E-05 28.1 -1.1 16 191-206 97-112 (112) 27 >1wv3_A Similar to DNA segrega 74.7 3.7 0.00011 21.3 3.7 29 117-145 53-81 (158) 28 >2jqj_A DNA damage response pr 74.5 3.3 9.8E-05 21.6 3.4 29 118-146 86-114 (151) 29 >3ixz_A Potassium-transporting 67.0 2.9 8.5E-05 22.0 1.7 31 118-148 10-40 (104) 30 >2g1e_A Hypothetical protein T 63.8 2.3 6.7E-05 22.7 0.7 60 81-145 23-85 (90) 31 >2zxe_A Na, K-ATPase alpha sub 62.5 5 0.00015 20.5 2.2 52 118-178 89-142 (184) 32 >1vfs_A Alanine racemase; TIM- 62.2 6.8 0.0002 19.6 2.9 35 113-147 72-119 (163) 33 >3fm8_A Kinesin-like protein K 59.4 12 0.00036 17.9 3.8 28 117-145 88-115 (124) 34 >2hc8_A PACS, cation-transport 56.4 7.5 0.00022 19.3 2.3 32 117-148 12-43 (113) 35 >3huf_A DNA repair and telomer 56.2 11 0.00031 18.4 3.0 29 117-145 75-104 (115) 36 >2qjl_A URM1, ubiquitin-relate 55.1 9.2 0.00027 18.7 2.6 62 81-145 30-94 (99) 37 >2cu3_A Unknown function prote 54.4 12 0.00034 18.1 3.0 25 120-144 31-58 (64) 38 >3dwg_C 9.5 kDa culture filtra 54.0 9.8 0.00029 18.6 2.6 63 80-145 23-88 (93) 39 >2k5p_A THis protein, thiamine 52.4 10 0.0003 18.5 2.4 25 120-144 36-63 (78) 40 >1tyg_B YJBS; alpha beta barre 52.0 13 0.00038 17.8 2.9 23 121-143 55-80 (87) 41 >2kl0_A Putative thiamin biosy 50.8 10 0.0003 18.5 2.2 25 120-144 32-59 (73) 42 >1rws_A Hypothetical protein P 50.2 7.2 0.00021 19.4 1.4 25 120-145 48-72 (77) 43 >2ff4_A Probable regulatory pr 49.7 14 0.00042 17.5 2.8 27 118-145 58-84 (99) 44 >1r21_A Antigen KI-67; beta sa 49.1 7.7 0.00023 19.2 1.4 27 122-148 17-43 (68) 45 >1wgk_A Riken cDNA 2900073H19 48.9 2.4 7E-05 22.6 -1.3 59 81-145 41-103 (114) 46 >1wln_A Afadin; beta sandwich, 48.9 14 0.00042 17.5 2.7 26 119-145 80-105 (120) 47 >3b8c_A ATPase 2, plasma membr 48.8 1.9 5.6E-05 23.2 -1.8 28 121-148 2-29 (93) 48 >3kt9_A Aprataxin; FHA domain, 48.6 16 0.00048 17.1 3.0 28 118-145 63-91 (102) 49 >2g1l_A Kinesin-like protein K 48.0 20 0.00058 16.6 3.6 26 118-144 70-95 (104) 50 >2pie_A E3 ubiquitin-protein l 48.0 19 0.00057 16.7 3.3 27 119-145 75-102 (138) 51 >1mhs_A Proton pump, plasma me 47.5 8.2 0.00024 19.0 1.3 30 119-148 5-34 (98) 52 >2eh0_A KLP, kinesin-like prot 47.2 16 0.00048 17.2 2.8 31 117-148 78-108 (130) 53 >1gxc_A CHK2, CDS1, serine/thr 46.1 20 0.0006 16.5 3.1 28 118-145 102-130 (149) 54 >1wpg_A Sarcoplasmic/endoplasm 46.0 7.6 0.00022 19.3 0.9 60 113-178 23-86 (130) 55 >3i6u_A CDS1, serine/threonine 45.6 20 0.00059 16.6 3.0 28 118-145 82-110 (125) 56 >2k9x_A Tburm1, uncharacterize 45.1 7.7 0.00023 19.2 0.9 59 81-145 33-97 (110) 57 >2dy3_A Alanine racemase; alph 44.7 19 0.00057 16.7 2.9 33 113-145 65-112 (145) 58 >1dmz_A Protein (protein kinas 43.0 14 0.0004 17.6 1.9 30 118-147 82-112 (158) 59 >3elv_A PRE-mRNA leakage prote 42.9 20 0.00059 16.6 2.7 29 117-145 162-191 (205) 60 >1g3g_A Protien kinase SPK1; F 42.5 24 0.0007 16.1 3.4 27 119-145 80-107 (137) 61 >1fm0_D Molybdopterin converti 42.3 24 0.00071 16.1 4.4 53 79-145 22-76 (81) 62 >1vjk_A Molybdopterin converti 42.0 12 0.00034 18.1 1.4 59 80-145 34-93 (98) 63 >1yj5_C 5' polynucleotide kina 41.9 20 0.0006 16.5 2.6 28 118-145 69-97 (143) 64 >3gqs_A Adenylate cyclase-like 40.3 19 0.00057 16.6 2.3 24 120-144 70-93 (106) 65 >2csw_A Ubiquitin ligase prote 40.0 18 0.00054 16.8 2.1 26 120-145 84-110 (145) 66 >2pmv_A Gastric intrinsic fact 39.9 20 0.0006 16.5 2.4 60 85-144 49-122 (126) 67 >1f0z_A THis protein; ubiquiti 39.6 18 0.00053 16.9 2.0 24 120-143 33-59 (66) 68 >1g6g_A Protein kinase RAD53; 37.8 28 0.00083 15.6 3.1 32 115-146 75-107 (127) 69 >1qu5_A Protein kinase SPK1; F 36.3 20 0.00058 16.6 1.8 28 119-146 107-135 (182) 70 >2jpe_A Nuclear inhibitor of p 35.8 15 0.00045 17.3 1.2 24 121-144 102-126 (140) 71 >3els_A PRE-mRNA leakage prote 35.8 28 0.00082 15.6 2.5 28 118-145 116-144 (158) 72 >1rcq_A Catabolic alanine race 32.2 27 0.00079 15.7 2.0 36 113-148 67-116 (146) 73 >2q5w_D Molybdopterin converti 32.2 34 0.001 15.0 3.4 50 80-145 23-72 (77) 74 >2kfu_A RV1827 PThr 22; FHA do 32.1 32 0.00094 15.2 2.3 25 119-145 117-141 (162) 75 >2z0t_A Putative uncharacteriz 31.8 27 0.0008 15.7 1.9 33 114-146 13-45 (109) 76 >2rjg_A Alanine racemase; alph 30.3 32 0.00093 15.3 2.1 35 113-147 88-136 (167) 77 >1l7l_A PA-I galactophilic lec 29.3 12 0.00037 17.9 -0.2 28 119-146 4-31 (121) 78 >3jyv_D 40S ribosomal protein 28.8 26 0.00078 15.8 1.5 15 87-101 95-109 (109) 79 >1xfc_A Alanine racemase; alph 28.7 39 0.0012 14.6 2.8 33 113-145 74-121 (162) 80 >1mzk_A Kinase associated prot 28.4 40 0.0012 14.6 2.5 28 118-145 75-111 (139) 81 >3kw3_A Alanine racemase; niai 27.3 41 0.0012 14.5 3.1 37 113-149 82-133 (161) 82 >3fse_A Two-domain protein con 26.6 43 0.0013 14.4 4.4 42 48-98 18-59 (159) 83 >1wxq_A GTP-binding protein; s 26.4 16 0.00047 17.2 -0.0 27 120-147 54-80 (81) 84 >1uht_A Expressed protein; FHA 24.6 37 0.0011 14.8 1.6 23 121-143 78-101 (118) 85 >2kij_A Copper-transporting AT 23.9 34 0.001 15.0 1.3 24 125-148 32-55 (124) 86 >1hcx_A Major autolysin; choli 23.5 39 0.0012 14.6 1.5 24 121-144 19-42 (42) 87 >2brf_A Bifunctional polynucle 23.4 49 0.0014 14.0 2.1 26 120-145 71-97 (110) 88 >3hur_A Alanine racemase; stru 23.3 49 0.0015 14.0 2.3 29 116-144 75-115 (152) 89 >3cuz_A MSA, malate synthase A 23.2 24 0.00071 16.0 0.4 27 107-133 54-80 (134) 90 >1qd7_I S17 ribosomal protein; 22.9 34 0.001 15.0 1.1 18 128-145 43-60 (89) 91 >1y43_B Aspergillopepsin II he 22.5 41 0.0012 14.5 1.5 18 127-144 49-66 (118) 92 >2bb6_A TCII, TC II, transcoba 21.9 45 0.0013 14.2 1.6 39 105-143 59-101 (106) 93 >2eki_A DRG 1, developmentally 20.9 46 0.0014 14.2 1.5 15 130-144 71-85 (93) 94 >2wa2_A Non-structural protein 20.8 55 0.0016 13.7 2.2 35 94-128 15-49 (276) 95 >1rvx_A Hemagglutinin; viral p 20.7 44 0.0013 14.3 1.3 23 122-144 131-155 (174) No 1 >>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:82-201) Probab=100.00 E-value=4.1e-39 Score=274.00 Aligned_cols=117 Identities=40% Similarity=0.614 Sum_probs=109.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCC Q ss_conf 68999998888899862121247887887624978788889413534833884788611002269999877521-68999 Q gi|254780187|r 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVP 165 (206) Q Consensus 87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P 165 (206) .|+++||+|||++|||+|||+|+++|||+|+||||+|||++|++|||+|++||+|++++++++...+..+.+.. ...+| T Consensus 1 ~ll~~LE~RLD~~l~R~gfa~s~~~ARqlI~hghV~VNg~~v~~ps~~v~~gD~i~~~~~~~~~~~~~~~~~~~~~~~~p 80 (120) T 3bbn_D 1 VLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELP 80 (120) T ss_dssp TTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHSSSTTTSCCC T ss_pred HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCEECCCEEECCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 79998987531035505733576888899987513615489816572546166300100131499999999852658999 Q ss_pred CEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 62788124318999967884211246753466316775049 Q gi|254780187|r 166 EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 166 ~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) +||++|+++++|++++.|++.+ +|..+||+|||||||| T Consensus 81 ~~Levd~~~~~~~~~~~P~r~e---i~~~i~e~lVvE~Ysr 118 (120) T 3bbn_D 81 KHLTLNPFPYKGLVNQIIDSKW---VGLKINELLVVEYYSR 118 (120) T ss_dssp TTEEEETTTTEEEECSCCCGGG---CCCSCCHHHHTTTSCC T ss_pred CEEEEECCCCEEEEECCCCHHH---CCCCCCCCEEEEECCC T ss_conf 8699874448899973777300---8999874479997677 No 2 >>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:1-99,D:194-209) Probab=100.00 E-value=6.5e-34 Score=240.26 Aligned_cols=94 Identities=38% Similarity=0.705 Sum_probs=89.8 Q ss_pred CCCCCCCEEEEEEECCCCCCCCC------CCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 97644871235200588888888------770001368998776544334135899999988485551565479999999 Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 (206) Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~~------k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~ 74 (206) ||||+||++|+|||||++||++. |+++++|+++|||||+++++|.|+||+||+||||+||+|| |+|+||++|| T Consensus 1 MaRy~GPr~Ki~RRlG~~l~~~~k~~~~~K~~~~rr~~~PGqHG~~~r~K~SeYg~qL~EKQKlk~~YG-i~EkQfr~y~ 79 (115) T 2vqe_D 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLF 79 (115) T ss_dssp -CCCCSCCHHHHHHHSSCCCTTSTTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHH T ss_conf 986557686763017998677785667877510147799986767678764378999999999999638-6848999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHH Q ss_conf 875303344302689999988 Q gi|254780187|r 75 KEADRSRGDTSHNLISFLESR 95 (206) Q Consensus 75 ~~A~~~~g~t~~~ll~~LE~R 95 (206) .+|.+++|+||+|||++||+- T Consensus 80 ~~A~k~kG~TGenLL~LLES~ 100 (115) T 2vqe_D 80 EEASKKKGVTGSVFLGLLESL 100 (115) T ss_dssp HHHHHSSSCHHHHHHHHHHTC T ss_pred HHHHHCCCCCHHHHHHHHHHC T ss_conf 999853798358899999997 No 3 >>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... (D:1-96,D:191-206) Probab=99.97 E-value=1.3e-32 Score=231.91 Aligned_cols=94 Identities=37% Similarity=0.641 Sum_probs=87.8 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCC----HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 97644871235200588888888770----00136899877654433413589999998848555156547999999987 Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGRPKSP----VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 (206) Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~~k~~----~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~ 76 (206) ||||+||++|+|||||++||+++|++ ..+++++|||||..+ +|+|+||+||+||||+||+|| ++|+||++||.+ T Consensus 1 MaRy~GPk~Ki~RRlG~~l~~~~K~~~~~~~~~r~~~pgqhg~~r-kK~SeYg~qL~EKQKlk~~YG-i~EkQfrryf~~ 78 (112) T 3i1m_D 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKE 78 (112) T ss_dssp -CCCCSCHHHHHHHTTSCCSSSCSSSCSSCSSCCSSCSSSSTTSC-CCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHH T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH T ss_conf 996557675631027988666788865674334678999888878-761579999999998998707-873889999999 Q ss_pred HHHCCCCCCHHHHHHHHHHH Q ss_conf 53033443026899999888 Q gi|254780187|r 77 ADRSRGDTSHNLISFLESRL 96 (206) Q Consensus 77 A~~~~g~t~~~ll~~LE~RL 96 (206) |.+++|+||+|||++||+-. T Consensus 79 A~k~kG~TG~nLL~lLEs~~ 98 (112) T 3i1m_D 79 AARLKGNTGENLLALLEGLS 98 (112) T ss_dssp HHHSSSCHHHHHHHHHHHCC T ss_pred HHHCCCCHHHHHHHHHHHCC T ss_conf 98669967999999999989 No 4 >>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... (D:97-190) Probab=99.94 E-value=1.8e-27 Score=198.52 Aligned_cols=93 Identities=41% Similarity=0.672 Sum_probs=87.7 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCCCEEEECCC Q ss_conf 888899862121247887887624978788889413534833884788611002269999877521-6899962788124 Q gi|254780187|r 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 (206) Q Consensus 95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P~wLevd~~ 173 (206) |||++|||+|||+|+.+|||||+||||+|||++||+|||.|++||+|++++++++...+..+.+.. .+.+|+||++|++ T Consensus 1 RLD~~l~r~gfa~S~~~ARqlI~hghv~VNg~~v~~ps~~vk~gD~i~i~~~~~~~~~i~~~~~~~~~~~~p~~l~~~~~ 80 (94) T 3i1m_D 1 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 80 (94) T ss_dssp STTHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCCCCTTCCEEECSSSCSCHHHHHHHHHHHTSCCCSSEECCSS T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCEECCCEEEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECC T ss_conf 88888660312540999999998503760887997631770589778862323258999999985063789885897475 Q ss_pred CCEEEEEECCCCCC Q ss_conf 31899996788421 Q gi|254780187|r 174 NMVATFVRIPSSLK 187 (206) Q Consensus 174 ~l~g~v~~~P~r~e 187 (206) .++|+|++.|+++| T Consensus 81 ~~~~~v~~~P~r~e 94 (94) T 3i1m_D 81 KMEGTFKRKPERSD 94 (94) T ss_dssp SCEEEECSCCCSTT T ss_pred CCEEEEEECCCHHH T ss_conf 57899994538898 No 5 >>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:100-193) Probab=99.91 E-value=7.9e-25 Score=181.32 Aligned_cols=93 Identities=38% Similarity=0.630 Sum_probs=86.9 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCCCEEEECCC Q ss_conf 888899862121247887887624978788889413534833884788611002269999877521-6899962788124 Q gi|254780187|r 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 (206) Q Consensus 95 RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P~wLevd~~ 173 (206) |||++|||+|||+|+++|||+|+||||+|||++|++|||.|++||+|++++.+.....+..+.+.. ...+|+||++|++ T Consensus 1 RLD~~l~r~~~~~Tr~~ArqlI~hg~V~VNg~~v~~ps~~v~~gD~I~i~~~~~~~~~~~~~~~~~~~~~~p~~le~~~~ 80 (94) T 2vqe_D 1 RLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 80 (94) T ss_dssp BHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHHHHHHHTTTCCCCTTCCEETT T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCEECCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 99999985352002898889987068450887997536785288600121101048999999976132789888573050 Q ss_pred CCEEEEEECCCCCC Q ss_conf 31899996788421 Q gi|254780187|r 174 NMVATFVRIPSSLK 187 (206) Q Consensus 174 ~l~g~v~~~P~r~e 187 (206) .++|++++.|+++| T Consensus 81 ~~~~~~~~~p~r~e 94 (94) T 2vqe_D 81 GMKGKFLRLPDRED 94 (94) T ss_dssp TTEEECCSCCCGGG T ss_pred CCEEEEEECCCHHH T ss_conf 18899994437888 No 6 >>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (D:81-179) Probab=99.91 E-value=6.9e-27 Score=194.66 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC----CC Q ss_conf 68999998888899862121247887887624978788889413534833884788611002269999877521----68 Q gi|254780187|r 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA----ER 162 (206) Q Consensus 87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~----~~ 162 (206) +|+++||+|||++|||+|||+|+++|||+|+||||+|||++|++|||+|++||+|++++++.+...+....+.. .. T Consensus 2 n~~~~LErRLD~il~R~gfa~s~~~ARqlI~HghI~VNg~~v~~Ps~~vk~gd~i~i~~~~~s~~~~~~~~~~~~~~~~~ 81 (99) T 1s1h_D 2 KVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAAR 81 (99) T ss_dssp SSSSSGGGBHHHHHHHHTSSSSHHHHHHHHHHTCBEETTEECCCTTCBCCTTEECCBCSSCCCTTTTTTTCCCCTTEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEECCEEEECCCCCEEEEECCCCCCCCCCCCHHHHCCCC T ss_conf 58888875078899981565889999999873772589999876246840587560556068988899975044431122 Q ss_pred CCCCEEEECCCCCEEE Q ss_conf 9996278812431899 Q gi|254780187|r 163 DVPEYISVNHDNMVAT 178 (206) Q Consensus 163 ~~P~wLevd~~~l~g~ 178 (206) ..|+|+++++..+.++ T Consensus 82 ~~~~~l~~~~~~~~~~ 97 (99) T 1s1h_D 82 KAEASGEAADEADEAD 97 (99) T ss_dssp TTTTEEEECSCCCTTT T ss_pred CCCCCCCCCCCCCCCC T ss_conf 4334566554433457 No 7 >>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:77-159) Probab=99.91 E-value=6e-25 Score=182.07 Aligned_cols=83 Identities=42% Similarity=0.759 Sum_probs=77.4 Q ss_pred CEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCE Q ss_conf 78788889413534833884788611002269999877521689996278812431899996788421124675346631 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~L 199 (206) ||+|||++||||||+|+|||+|++++++++...+..+.+ ..+.+|+||++|.++++|++++.|+|.+ +|+.+||+| T Consensus 1 Hi~VNgkkVdIPSy~~k~gD~I~ik~k~~~~~~v~~~~~-~~~~~p~~l~~d~~~~~g~v~~~P~r~e---i~~~ine~L 76 (83) T 1c05_A 1 HILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPERSE---LPAEINEAL 76 (83) T ss_dssp CEEETTEECCCSSCBCCTTCEEEECGGGSSCHHHHHHHH-TCCCCCSSEEEETTTTEEEECSCCCTTT---SCSSCCSHH T ss_pred CEECCCEEEEECCEEECCCCEEEECCCCCHHHHHHHHHH-CCCCCCCEEEECCCCCEEEEEECCCHHH---CCCCCCCCE T ss_conf 636043699843416217848750200004899999985-4167997228617677999996556787---898877357 Q ss_pred EEEEECC Q ss_conf 6775049 Q gi|254780187|r 200 VVEFYSR 206 (206) Q Consensus 200 VVEyYSR 206 (206) ||||||| T Consensus 77 VVEyYSR 83 (83) T 1c05_A 77 IVEFYSR 83 (83) T ss_dssp HHHHHHC T ss_pred EEEECCC T ss_conf 9986479 No 8 >>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:22-76) Probab=99.84 E-value=2.9e-21 Score=158.23 Aligned_cols=55 Identities=42% Similarity=0.682 Sum_probs=54.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC Q ss_conf 5479999999875303344302689999988888998621212478878876249 Q gi|254780187|r 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 (206) Q Consensus 65 ~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg 119 (206) |+||||++||++|.+++|+||++|+++||+||||+|||+|||+|+++|||+|+|| T Consensus 1 i~EkQf~~~~~~A~k~~g~tg~~ll~lLE~RLD~vvyR~gfa~S~~~ARQlV~HG 55 (55) T 1c05_A 1 VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHG 55 (55) T ss_dssp CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHBHHHHHHHTTSCSSHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC T ss_conf 6689999999999865898514289999987545411577437888899888735 No 9 >>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=99.72 E-value=2.7e-19 Score=145.48 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=59.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCC--CEEEECCHHHHH Q ss_conf 6899999888889986212124788788762497878888941353483388--478861100226 Q gi|254780187|r 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKSKQL 150 (206) Q Consensus 87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~g--d~I~~~~ksk~~ 150 (206) |++.+||+|||++|||+|||+|+.+|||+|.||||+|||++|++|||+|++| |.|+++++++.. T Consensus 1 ~~~~~lerRLd~~l~~~g~a~s~~~Ar~lI~~G~V~Vng~~v~~Ps~~v~~~~~d~I~~~~~~k~~ 66 (71) T 2cqj_A 1 GSSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIS 66 (71) T ss_dssp CCSSCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSC T ss_pred CCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCEEEECCEEECCCCEEECCCCCCEEEEECCCCCC T ss_conf 910344412689999805527899999999849899899995569858358998869984688678 No 10 >>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} (A:1-65) Probab=99.41 E-value=4.4e-14 Score=111.59 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=53.4 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCE--EECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 998888899862121247887887624978--788889413534833884788611002 Q gi|254780187|r 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHV--LVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i--~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) .|+|||.+|+++|||.|+.+|+|+|.|||| .|||++|++|||.|++||.|+++++.. T Consensus 5 ~~~RLD~~L~~~g~~~Sr~~A~~lI~~G~V~~~VNg~~v~kp~~~v~~~d~i~v~~~~~ 63 (65) T 3hp7_A 5 PKERVDVLAYKQGLFETREQAKRGVXAGLVVNVINGERYDKPGEKIDDGTELKLKGEKL 63 (65) T ss_dssp CEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETTCCC T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCEEEEECCCC T ss_conf 08899999998758124999999998599423209989568867879999899807776 No 11 >>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:350-432) Probab=99.26 E-value=1.6e-12 Score=101.53 Aligned_cols=66 Identities=9% Similarity=0.108 Sum_probs=60.3 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHH Q ss_conf 026899999888889986212124788788762497878888941353483388478861100226 Q gi|254780187|r 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 (206) Q Consensus 85 ~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~ 150 (206) +...+..+|+|||.+++++|||+|+.+|||+|.||+|.|||++|+.|+|.|.+||.|.++...|+. T Consensus 11 ~~~~~~~~~~rl~~~l~~~gl~~S~~~ARrlI~~G~V~vN~~~v~~~~~~v~~~d~i~i~~GKk~~ 76 (83) T 1h3f_A 11 PASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRF 76 (83) T ss_dssp CGGGCBTTEEEHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECSSCEEEEETTTEE T ss_pred CHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCCE T ss_conf 387832586349999998498677899999998599898999824877021589808998458758 No 12 >>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} (A:) Probab=99.10 E-value=1.5e-12 Score=101.62 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=63.7 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH Q ss_conf 53033443026899999888889986212124788788762497878888941353483388478861100 Q gi|254780187|r 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 (206) Q Consensus 77 A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks 147 (206) +.++...+........+.|||.+|.++|++.|+.+|+++|.||+|.|||++++.|||.|++||+|++..+. T Consensus 4 ~~~~~~~~~~~~~~~~~~RLd~~L~~~~~~~SR~~a~~~I~~G~V~VNg~~v~~~~~~v~~gd~I~i~~~~ 74 (79) T 1p9k_A 4 IHRMSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 74 (79) T ss_dssp CCSSCCCCEEECCSCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEE T ss_pred HHCCCCCCEEECCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECCEE T ss_conf 00014771386499971979999987788368999999998499798999927788798999999999999 No 13 >>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} (A:1-57) Probab=99.02 E-value=2e-10 Score=87.86 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=50.9 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 9988888998621212478878876249787888894135348338847886110 Q gi|254780187|r 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) |++|||.+|.++|++ |+.+|+++|.||+|.|||++++.|||.|++||.|+++.+ T Consensus 1 m~~RLDk~L~~~~~~-SR~~a~~lI~~g~V~Vng~~i~~~~~~v~~~d~i~v~g~ 54 (57) T 1vio_A 1 MSLRLDKFIAENVGL-TRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE 54 (57) T ss_dssp -CEEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE T ss_pred CCHHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEEEEC T ss_conf 955899999987785-899999999879789999991548958688787876203 No 14 >>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} (A:1-58) Probab=98.96 E-value=4.9e-10 Score=85.37 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=49.4 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 988888998621212478878876249787888894135348338847886110 Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) +.|||.+|.+++++ ||.+|+++|.||+|+|||++|+.|||.|++||+|++..+ T Consensus 3 ~~RLDk~L~~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~i~g~ 55 (58) T 1ksk_A 3 HXRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN 55 (58) T ss_dssp CEEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE T ss_pred CCHHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECCCCCCEECCCCEEEEEEE T ss_conf 40099999877896-899999999889299999994668858078676997210 No 15 >>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} (A:) Probab=98.83 E-value=3e-09 Score=80.24 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=50.3 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 9988888998621212478878876249787888894135348338847886110 Q gi|254780187|r 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 92 LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) .++|||.+|.++||+.|+.+|+++|.||+|.|||++++ ||+.+++||.|++... T Consensus 7 ~g~RLDk~L~~~~~~~sR~~a~~li~~G~V~VNG~~~~-~s~~v~~gD~i~i~~~ 60 (133) T 1dm9_A 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQG 60 (133) T ss_dssp TCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEET T ss_pred CCEEHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEECC-CCCEECCCCEEEEEEC T ss_conf 64629999987867168999999998691888999734-5856159998999879 No 16 >>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} (A:) Probab=98.67 E-value=3e-09 Score=80.28 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=50.0 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 8888899862121247887887624978788889413534833884788611002 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) ||||..+.+.+++.|+.+|+|+|.||+|.|||+++. ||+.|++||+|++..... T Consensus 1 mRLD~~L~~~~~~~sr~~~~k~i~~g~I~VNg~~~~-~~~~v~~gD~i~i~~~~~ 54 (92) T 2k6p_A 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISLHYLKG 54 (92) T ss_dssp CBHHHHSTTTTSCCCCCSSCCHHHHTCCEETTEECC-TTCBCCTTCEEEECCSSC T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEEE-ECCCCCCCCEEEEEECCC T ss_conf 967899987277159999999998997998989986-624718999999984896 No 17 >>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} (A:1-63) Probab=98.34 E-value=5.1e-07 Score=65.78 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH Q ss_conf 9888889986212124788788762497878888941353483388478861100 Q gi|254780187|r 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 (206) Q Consensus 93 E~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks 147 (206) .+|||.+|.++|++ |+.+|+++|.+|+|.|||+.|. ||+.|.+||.|++.... T Consensus 6 ~~RLDk~La~~~~~-SR~~~~~li~~G~V~Vng~~vk-~~~~v~~~d~I~v~~~~ 58 (63) T 3dh3_A 6 SVRLNKYISESGIC-SRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQL 58 (63) T ss_dssp CEEHHHHHHTTTSS-CHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTEE T ss_pred CCCHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEECC-CCCCCCCCCEEEECCEE T ss_conf 70499999877885-1999999998793898999947-88896999989999999 No 18 >>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} (A:247-420) Probab=97.63 E-value=3.6e-05 Score=53.82 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=66.6 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CCHHH-----------HHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 899999988485551565479999999875303344--30268-----------99999888889986212124788788 Q gi|254780187|r 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD--TSHNL-----------ISFLESRLDTIVYRAKFVPTIFAARQ 114 (206) Q Consensus 48 yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~--t~~~l-----------l~~LE~RLD~~v~r~g~a~t~~~Arq 114 (206) .+....+..=.+.+||.=.-.+-...+......... +...+ +..-+.++..++.++|+++|..+||. T Consensus 48 ~aqk~LA~eit~~vHG~~~a~~A~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~~l~~SkseaRr 127 (174) T 1jil_A 48 EAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQARE 127 (174) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC------------------------------------------------- T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHH T ss_conf 66899999999971576778999999999833554336725454332148727715888789999998388467999999 Q ss_pred HHHCCCEEECCEEEECCCEEECCCCEEE Q ss_conf 7624978788889413534833884788 Q gi|254780187|r 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 (206) Q Consensus 115 ~v~hg~i~vng~~v~~ps~~~k~gd~I~ 142 (206) +|.+|.|.|||++|+-|++.+..+|.+. T Consensus 128 lI~~ggv~in~~ki~d~~~~i~~~~l~~ 155 (174) T 1jil_A 128 DVNNGAIYINGERQQDVNYALAPEDKID 155 (174) T ss_dssp ---------------------------- T ss_pred HHHCCCEEECCEEECCCCCEECHHHCCC T ss_conf 9984998999998138444007757048 No 19 >>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} (A:345-432) Probab=97.56 E-value=5.9e-05 Score=52.43 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=44.6 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEE Q ss_conf 8888899862121247887887624978788889413534833884788 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~ 142 (206) .++..++..+|+++|..+||.+|..|.|.|||++|+-|.+.+.++|.+. T Consensus 12 ~~i~~lL~~~gl~~S~~earrlI~~GgV~IN~~~v~d~~~~i~~~~~i~ 60 (88) T 2jan_A 12 DGIVDLLVASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFLH 60 (88) T ss_dssp CSHHHHHHHHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSBT T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHCCEEECCEECCCCCCCCCHHHHCC T ss_conf 7799999982886789999999993999989998169433027878227 No 20 >>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} (A:246-419) Probab=96.89 E-value=0.00018 Score=49.34 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=61.5 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC--CHHHHH-----------HHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 8999999884855515654799999998753033443--026899-----------999888889986212124788788 Q gi|254780187|r 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT--SHNLIS-----------FLESRLDTIVYRAKFVPTIFAARQ 114 (206) Q Consensus 48 yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t--~~~ll~-----------~LE~RLD~~v~r~g~a~t~~~Arq 114 (206) .+....++.=.+.++|.=.-.+-...+......+... ...+.. .-+.++..++..+|+++|..+||. T Consensus 48 ~aqk~LA~eit~~vHG~~~a~~A~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~gl~~S~seaRr 127 (174) T 2ts1_A 48 AAQKTLAEEVTKLVHGEEALRQAIRISEALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQARE 127 (174) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHC----------------------------------------------------- T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCHHHHHHHCCCCCCHHHHHH T ss_conf 67899999999975122556799997766303664567715566655304302215799769999998598677899999 Q ss_pred HHHCCCEEECCEEEECCCEEECCCCEE Q ss_conf 762497878888941353483388478 Q gi|254780187|r 115 FVNHRHVLVNGRSVNIGSYRCKEGDVI 141 (206) Q Consensus 115 ~v~hg~i~vng~~v~~ps~~~k~gd~I 141 (206) +|.+|-|.|||.+|+-|.+.+.+.|.+ T Consensus 128 lI~~ggv~in~~ki~d~~~~i~~~~~~ 154 (174) T 2ts1_A 128 DIQNGAIYVNGERLQDVGAILTAEHRL 154 (174) T ss_dssp --------------------------- T ss_pred HHHCCCEEECCEEECCCCCCCCHHHCC T ss_conf 998699898999823842201775714 No 21 >>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} (A:1-81) Probab=96.84 E-value=0.0015 Score=43.24 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=43.1 Q ss_pred HHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHH Q ss_conf 6212124788788762497878888941353483388478861100 Q gi|254780187|r 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 (206) Q Consensus 102 r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ks 147 (206) ++++|.|..+|+.++..|.|.|||+..+-+.|.+-.-|+|++.... T Consensus 17 ~Lk~A~t~rEak~Il~~~~V~VDGkvr~D~~~pvG~mDVIsi~~e~ 62 (81) T 3kbg_A 17 YLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFXDVIEINGES 62 (81) T ss_dssp HHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEETTEE T ss_pred HHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEECCCE T ss_conf 6452265899999986793898999962389988706799979977 No 22 >>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} (A:) Probab=95.53 E-value=0.0026 Score=41.77 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=49.9 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 9998888899862121247887887624978788889413534833884788611 Q gi|254780187|r 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 91 ~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .-.+|||.++.+.+...|+..+.+++..|.|.|||++++.|.+.+..++++.+.. T Consensus 14 ~~g~rl~~~L~~~~~~~sr~~~~~~i~~G~V~vng~~~~~~~~~~~~~~~~~~~~ 68 (325) T 1v9f_A 14 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68 (325) T ss_dssp ------------------------------------------------------- T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECC T ss_conf 4886699999986686799999999986998999999178320625898997325 No 23 >>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} (A:1-84) Probab=83.74 E-value=0.54 Score=26.71 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=49.1 Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEE---CCCEEECCCCEEEECC Q ss_conf 033443026899999888889986212124788788762497878888941---3534833884788611 Q gi|254780187|r 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN---IGSYRCKEGDVIEVKQ 145 (206) Q Consensus 79 ~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~---~ps~~~k~gd~I~~~~ 145 (206) --.|.|...++..|+.+.. ++.........+..+=.|.|||+-+. -.+..++.||.|.+=+ T Consensus 19 ~v~~~Tv~~ll~~L~~~~p------~~~~~l~~~g~~~~~v~i~vNg~~i~~~~~~~t~l~dgDeVai~P 82 (84) T 1v8c_A 19 ELPGATVGEVLENLVRAYP------ALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (84) T ss_dssp ECCCSBHHHHHHHHHHHCG------GGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC T ss_pred EECCCCHHHHHHHHHHHCC------CCHHHCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEEC T ss_conf 9578999999999985786------302200344351013899987877414578886869999999969 No 24 >>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (D:1-99,D:194-209) Probab=83.63 E-value=0.11 Score=31.14 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=12.4 Q ss_pred CCCCCCCCEEEEEECC Q ss_conf 6753466316775049 Q gi|254780187|r 191 YPVIMQPNLVVEFYSR 206 (206) Q Consensus 191 ~p~~ine~LVVEyYSR 206 (206) +...+||+|||||||| T Consensus 100 ~~~~~~~~~~~~~~~~ 115 (115) T 2vqe_D 100 LALPVNEQLVIEFYSR 115 (115) T ss_dssp CCCSCCHHHHHHHTTC T ss_pred CCCCCCCCEEEEECCC T ss_conf 7988771479985279 No 25 >>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} (A:1-102,A:201-217) Probab=78.34 E-value=0.51 Score=26.88 Aligned_cols=37 Identities=8% Similarity=-0.198 Sum_probs=31.7 Q ss_pred HHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 7887887624978788889413534833884788611 Q gi|254780187|r 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 109 ~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) +.++.++|..|.|.|||++|.-+.+..-+|..|...+ T Consensus 2 Rr~~~~~i~~G~V~Vng~~v~~~d~i~~~~~~I~yed 38 (119) T 2olw_A 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP 38 (119) T ss_dssp -----------------------------------CC T ss_pred CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 5367068714212255422120554003556887899 No 26 >>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... (D:1-96,D:191-206) Probab=77.42 E-value=0.34 Score=28.05 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=13.6 Q ss_pred CCCCCCCCEEEEEECC Q ss_conf 6753466316775049 Q gi|254780187|r 191 YPVIMQPNLVVEFYSR 206 (206) Q Consensus 191 ~p~~ine~LVVEyYSR 206 (206) +..++||+||||+||+ T Consensus 97 ~~~~~~~~~~~~~~~~ 112 (112) T 3i1m_D 97 LSADINEHLIVELYSK 112 (112) T ss_dssp CCSSCCSTTTTTTTTC T ss_pred CCCCCCCCEEEEECCC T ss_conf 8988760479985469 No 27 >>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} (A:81-238) Probab=74.74 E-value=3.7 Score=21.31 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=25.3 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 24978788889413534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .+|-+.+||+.+....+.|+.||+|.|-. T Consensus 53 ~ngt~~~n~~~~~~~~~~L~~Gd~i~iG~ 81 (158) T 1wv3_A 53 KNTDVYINYELQEQLTNKAYIGDHIYVEG 81 (158) T ss_dssp TTCCEEETTEECCSSEEEEETTCEEEETT T ss_pred CCCCEEECCEEEECCEEECCCCCEEEECC T ss_conf 89869987899725504304899999998 No 28 >>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* (A:) Probab=74.55 E-value=3.3 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.5 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 49787888894135348338847886110 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) -.-+.|||+++..-.+.|..||+|.+-.. T Consensus 86 ~ngt~vNg~~i~~~~~~L~~gd~I~iG~~ 114 (151) T 2jqj_A 86 RNGTFINGNRLVKKDYILKNGDRIVFGKS 114 (151) T ss_dssp SSCEEETTEECCSSCEEECSSEEEEETTT T ss_pred CCCCCCCCEEECCCCEECCCCCEEEECCC T ss_conf 87541688591689769899999998997 No 29 >>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:169-272) Probab=66.96 E-value=2.9 Score=22.00 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.5 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 4978788889413534833884788611002 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) .-.+.-||+...+|+..|.+||+|.+++... T Consensus 10 ~~~V~rdg~~~~i~~~~lv~GDii~i~~G~~ 40 (104) T 3ixz_A 10 QATVIRDGDKFQINADQLVVGDLVEMKGGDR 40 (104) T ss_pred EEEEEECCEEEEEEHHHCCCCCEEEECCCCE T ss_conf 6699999999998889988388899999899 No 30 >>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A (A:) Probab=63.80 E-value=2.3 Score=22.67 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=38.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 34430268999998888899862121247887887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .+.|...++..|+.+....--++ ....-++-.+=.|.|||+.+.. ++..|++||.|++=+ T Consensus 23 ~~~Tv~~ll~~L~~~~p~~~~~l-----~~~~~~~~~~v~v~vNg~~v~~~~~~~t~l~~gD~V~ilP 85 (90) T 2g1e_A 23 GISKISELLERLKVEYGSEFTKQ-----MYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90) T ss_dssp SCCBHHHHHHHHHHHSCHHHHHH-----HCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHCHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 99989999999996742789999-----8501023335045770300023446565379999999968 No 31 >>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:1-86,A:171-268) Probab=62.55 E-value=5 Score=20.45 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=35.0 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCC-CCC-CCEEEECCCCCEEE Q ss_conf 49787888894135348338847886110022699998775216-899-96278812431899 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDV-PEYISVNHDNMVAT 178 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~-~~~-P~wLevd~~~l~g~ 178 (206) +-.|.-||..+.||+-.|.|||+|.|+...+-- ++ +-+ ..-+.+|...|+|. T Consensus 89 ~a~ViRdG~~~~I~~~~Lv~GDiV~i~~Gd~VP---------aDg~ii~~g~~~vdes~LTGE 142 (184) T 2zxe_A 89 QALVIRDGEKSTINAEFVVAGDLVEVKGGDRIP---------ADLRIISAHGCKVDNSSLTGE 142 (184) T ss_dssp EEEEEETTEEEEEEGGGCCTTCEEEEETTCBCC---------SEEEEEEEEEEEEECHHHHSC T ss_pred EEEEEECCEEEEEEHHHCCCCCEEEECCCCEEE---------EEEEEEEECCEEEECCHHHCC T ss_conf 669999999999888998808889999989995---------017999846728984320079 No 32 >>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:1-14,A:238-386) Probab=62.17 E-value=6.8 Score=19.60 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=26.7 Q ss_pred HHHHHCCCEEECCEE-------------EECCCEEECCCCEEEECCHH Q ss_conf 887624978788889-------------41353483388478861100 Q gi|254780187|r 113 RQFVNHRHVLVNGRS-------------VNIGSYRCKEGDVIEVKQKS 147 (206) Q Consensus 113 rq~v~hg~i~vng~~-------------v~~ps~~~k~gd~I~~~~ks 147 (206) |.+=+.+++++||++ |+++...+++||.+++=-+. T Consensus 72 R~lsn~~~vli~G~~~pivGrI~MD~~mVDvtd~~~~vGd~V~L~G~~ 119 (163) T 1vfs_A 72 RNASGRGPVLVAGKIRRAAGRIAMDQFVVDLGEDLAEAGDEAVILGDA 119 (163) T ss_dssp GGGTTTCEEEETTEEEEBCSCCCSSCEEEEEETCCCCTTCEEEEECCG T ss_pred CCCCCCEEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCEEEEEECC T ss_conf 235577089999999389729855717998889878989999998689 No 33 >>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consortium, SGC, ATP-binding, coiled coil, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} (A:) Probab=59.38 E-value=12 Score=17.92 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=20.7 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 24978788889413534833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) +-.-+.|||+.++-| +.|+.||+|++-+ T Consensus 88 s~ngt~vNg~~l~~~-~~L~~Gd~i~iG~ 115 (124) T 3fm8_A 88 KNTRTFVNGSSVSSP-IQLHHGDRILWGN 115 (124) T ss_dssp TTCCEEETTEECCSC-EEECTTCEEEETT T ss_pred CCCCEEECCCEECCC-EECCCCCEEEECC T ss_conf 888658874183676-6999999999899 No 34 >>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F (A:) Probab=56.43 E-value=7.5 Score=19.32 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=26.7 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 24978788889413534833884788611002 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) ..=.+.-||+...+|+-.+.+||+|.+++... T Consensus 12 ~~~~vir~g~~~~i~~~~l~~GDii~v~~G~~ 43 (113) T 2hc8_A 12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEK 43 (113) T ss_dssp SEEEEEETTEEEEEEGGGCCTTCEEEECTTCB T ss_pred CEEEEEECCEEEEEEHHHCCCCCEEEEECCCE T ss_conf 98999999999999979986036997813867 No 35 >>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosphoserine binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* (A:1-115) Probab=56.19 E-value=11 Score=18.36 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=19.2 Q ss_pred HCCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 249787888894135-34833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) +..-..|||+++... .+.|+.||+|++-. T Consensus 75 S~nGt~vNg~~i~~~~~~~L~~Gd~i~iG~ 104 (115) T 3huf_A 75 TKFGTKVNEKVVGQNGDSYKEKDLKIQLGK 104 (115) T ss_dssp CSSCEEETTEECCTTCEEECSSEEEEEETT T ss_pred CCCCEEECCEECCCCCEEECCCCCEEEECC T ss_conf 767767899984788447778998899778 No 36 >>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A (A:) Probab=55.08 E-value=9.2 Score=18.74 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=38.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 34430268999998888899862121247887887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .|.|...++..|+.+.-..--+..+ ....-.+-.+=.|.|||+.+.. ++..+++||.|++=+ T Consensus 30 ~~~Tv~~li~~l~~~~p~~~~~~~~---~~~~~~~~~~~~v~vNg~~i~~~~~~~t~L~~gDeV~i~p 94 (99) T 2qjl_A 30 DPVTVGDLIDHIVSTMINNPNDVSI---FIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99) T ss_dssp SCCBHHHHHHHHHHHTCSSGGGHHH---HEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHH---HCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCCEEEEEC T ss_conf 8888999999999874553034331---1234542322899987958781788775859979999967 No 37 >>2cu3_A Unknown function protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus HB8} (A:) Probab=54.42 E-value=12 Score=18.09 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=18.7 Q ss_pred CEEECCEEEECC---CEEECCCCEEEEC Q ss_conf 787888894135---3483388478861 Q gi|254780187|r 120 HVLVNGRSVNIG---SYRCKEGDVIEVK 144 (206) Q Consensus 120 ~i~vng~~v~~p---s~~~k~gd~I~~~ 144 (206) .+.|||..|-.. ++.|+.||.|++- T Consensus 31 av~vN~~ivpr~~w~~~~L~~gD~ieii 58 (64) T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64) T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEEE T ss_pred EEEECCEEECHHHCCCCCCCCCCEEEEE T ss_conf 9999999818889381328998999999 No 38 >>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3dwm_A (C:) Probab=54.00 E-value=9.8 Score=18.55 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=38.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 334430268999998888899862121247887887624978788889413---534833884788611 Q gi|254780187|r 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) ..|.|...|+..|+.+..-.--++-....- -++-.+=.|+|||..|.. ....+++||.|.+=+ T Consensus 23 ~~~~Tv~~ll~~l~~~~p~~~~~l~~~~~~---~~~~~~i~v~vNg~~v~~~~~~~t~l~~gDeV~ilP 88 (93) T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSP---GKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93) T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSST---TSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE T ss_pred ECCCCHHHHHHHHHHHCCHHHHHHCCCCCC---CCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEEEC T ss_conf 678899999999985774177763032223---442301799985745100147666379989999968 No 39 >>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A (A:) Probab=52.38 E-value=10 Score=18.47 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.4 Q ss_pred CEEECCEEEEC---CCEEECCCCEEEEC Q ss_conf 78788889413---53483388478861 Q gi|254780187|r 120 HVLVNGRSVNI---GSYRCKEGDVIEVK 144 (206) Q Consensus 120 ~i~vng~~v~~---ps~~~k~gd~I~~~ 144 (206) -|.|||..|.. .++.++.||.|++- T Consensus 36 aV~vN~~iVpr~~w~~~~L~~gD~IeIi 63 (78) T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78) T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEEC T ss_pred EEEECCEEECHHHHCCCCCCCCCEEEEE T ss_conf 9998999947789180448997999999 No 40 >>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, biosynthetic protein; 3.15A {Bacillus subtilis} (B:) Probab=52.04 E-value=13 Score=17.80 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=10.6 Q ss_pred EEECCEEEECC---CEEECCCCEEEE Q ss_conf 87888894135---348338847886 Q gi|254780187|r 121 VLVNGRSVNIG---SYRCKEGDVIEV 143 (206) Q Consensus 121 i~vng~~v~~p---s~~~k~gd~I~~ 143 (206) |.|||..|..- ++.|+.||.|++ T Consensus 55 V~vN~~iVpr~~w~~~~L~~gD~IEI 80 (87) T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87) T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE T ss_pred EEECCEECCHHHCCHHCCCCCCEEEE T ss_conf 99899987867875305999799999 No 41 >>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} (A:) Probab=50.79 E-value=10 Score=18.51 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=18.5 Q ss_pred CEEECCEEEEC---CCEEECCCCEEEEC Q ss_conf 78788889413---53483388478861 Q gi|254780187|r 120 HVLVNGRSVNI---GSYRCKEGDVIEVK 144 (206) Q Consensus 120 ~i~vng~~v~~---ps~~~k~gd~I~~~ 144 (206) -|.|||..|.. .++.|+.||.|++- T Consensus 32 aVavN~~iIpr~~w~~~~L~~gD~IEIv 59 (73) T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73) T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEEE T ss_pred EEEECCEEECHHHCCCCCCCCCCEEEEE T ss_conf 9998999918889281318998999999 No 42 >>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown function; NMR {Pyrococcus furiosus dsm 3638} (A:) Probab=50.19 E-value=7.2 Score=19.43 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=20.1 Q ss_pred CEEECCEEEECCCEEECCCCEEEECC Q ss_conf 78788889413534833884788611 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) .|.|||..++ ++..|+.||.|++-+ T Consensus 48 ~v~vNg~~v~-~~~~L~dgD~v~i~~ 72 (77) T 1rws_A 48 IAKVNGKVVL-EDDEVKDGDFVEVIP 72 (77) T ss_dssp CEEETTEEEC-SSSCCCSSCCCBCSC T ss_pred HEEECCEECC-CCCCCCCCCEEEEEE T ss_conf 1559999969-972869999999990 No 43 >>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} (A:290-388) Probab=49.73 E-value=14 Score=17.49 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.9 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 4978788889413534833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -.-+.|||+.+. ..+.+++||.|.+-. T Consensus 58 ~~g~~vng~~v~-~~~~L~~Gd~i~iG~ 84 (99) T 2ff4_A 58 SNGVHVQHERIR-SAVTLNDGDHIRICD 84 (99) T ss_dssp SSCCEETTEECS-SEEEECTTCEEEETT T ss_pred CCCEEECCEECC-CCEECCCCCEEEECC T ss_conf 878579999987-856789999999978 No 44 >>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} (A:1-31,A:92-128) Probab=49.08 E-value=7.7 Score=19.22 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=20.7 Q ss_pred EECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 788889413534833884788611002 Q gi|254780187|r 122 LVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 122 ~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) ++.-.-|+-|.|.+.-||+|+|-++|- T Consensus 17 tikrsgvdgphfplsHGDvITIvDRSF 43 (68) T 1r21_A 17 TIKRSGVDGPHFPLSHGDVITIIDRSF 43 (68) T ss_dssp EEEETTEEEEEEECCTTEEEECSSCEE T ss_pred EEECCCCCCCEEEECCCCEEEECCEEE T ss_conf 998389886589968999999989999 No 45 >>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=48.92 E-value=2.4 Score=22.58 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=39.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 344302689999988888998621212478-87887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIF-AARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~-~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .+.|...|+..|+.+... +..... ..-++..+=.|+|||+-+.. ....|+.||.|.+=+ T Consensus 41 ~~~Tv~~ll~~L~~~~p~------l~~~l~d~~~~~~~~i~v~vN~~~v~~~~~~~t~l~~gDeV~i~P 103 (114) T 1wgk_A 41 EPWDIRNLLVWIKKNLLK------ERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114) T ss_dssp SCCBHHHHHHHHTTTTCC------SCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE T ss_pred CCCCHHHHHHHHHHHCCC------CCHHHHCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEC T ss_conf 875699999999987675------223453147885055899975842460568663769979999978 No 46 >>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=48.91 E-value=14 Score=17.52 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=16.6 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 978788889413534833884788611 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ..+.|||+.++-+ ..|++||+|.+-. T Consensus 80 ngt~vNg~~i~~~-~~L~~gd~i~iG~ 105 (120) T 1wln_A 80 AETYVDGQRISET-TMLQSGMRLQFGT 105 (120) T ss_dssp SCEEETSCBCSSC-EEECTTCEEEETT T ss_pred CCEEECCCCCCEE-EECCCCCEEEECC T ss_conf 6169998691432-9888999999899 No 47 >>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} (A:133-225) Probab=48.80 E-value=1.9 Score=23.19 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.6 Q ss_pred EEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 8788889413534833884788611002 Q gi|254780187|r 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 121 i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) |.-||+...+|+..|.+||+|.+++... T Consensus 2 V~r~g~~~~i~~~~l~~GDii~v~~G~~ 29 (93) T 3b8c_A 2 VLRDGKWSEQEAAILVPGDIVSIKLGDI 29 (93) T ss_dssp CCCSSCSCCCCTTTTCTTSBCCCCSSCC T ss_pred EEECCEEEEEEHHHCCCCCEEEECCCCE T ss_conf 9999999998889989898899999899 No 48 >>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} (A:) Probab=48.63 E-value=16 Score=17.15 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=20.7 Q ss_pred CCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 49787888894135-34833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) ..-+.|||+.+... .+.+++||.|++-. T Consensus 63 ~ngt~vng~~l~~~~~~~L~~gd~I~iG~ 91 (102) T 3kt9_A 63 VNPTSIDSVVIGKDQEVKLQPGQVLHMVN 91 (102) T ss_dssp SSCCEETTEECCBTCEEEECTTCCEEEET T ss_pred CCCEEECCEEECCCCCCCCCCCCEEEEEC T ss_conf 89758998994689761648999999908 No 49 >>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, SGC, transport protein; 2.60A {Homo sapiens} (A:) Probab=48.04 E-value=20 Score=16.62 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=14.9 Q ss_pred CCCEEECCEEEECCCEEECCCCEEEEC Q ss_conf 497878888941353483388478861 Q gi|254780187|r 118 HRHVLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 118 hg~i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) -..+.|||+.+.-| +.+++||+|.+- T Consensus 70 ~ngt~vNg~~i~~~-~~L~~gD~i~iG 95 (104) T 2g1l_A 70 GAETYVNGKLVTEP-LVLKSGNRIVMG 95 (104) T ss_dssp TCCEEETTEECCSC-EECCTTCEEEET T ss_pred CCCCEECCEECCCC-EECCCCCEEEEC T ss_conf 78708998780242-699999999989 No 50 >>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} (A:) Probab=48.03 E-value=19 Score=16.66 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=21.3 Q ss_pred CCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 978788889413-534833884788611 Q gi|254780187|r 119 RHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 119 g~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) .-+.|||+++.. -.+.|+.||+|.+-. T Consensus 75 nGt~vng~~i~~~~~~~L~~gd~i~iG~ 102 (138) T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138) T ss_dssp SCEEETTEECCTTCCEECCTTCEEEESC T ss_pred CEEEECCEECCCCCEEECCCCCEEEECC T ss_conf 4688999993799758878999999278 No 51 >>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} (A:176-273) Probab=47.53 E-value=8.2 Score=19.05 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.8 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 978788889413534833884788611002 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) -.+.-||+...+|+-.|.+||+|.+++..+ T Consensus 5 ~~v~r~g~~~~v~~~~l~~GDii~v~~G~~ 34 (98) T 1mhs_A 5 AVVLRDGTLKEIEAPEVVPGDILQVEEGTI 34 (98) T ss_dssp CEEECSSSEEECCTTTSCTTSEEEECTTCB T ss_pred EEEEECCEEEEEEHHHCCCCCEEEECCCCE T ss_conf 499999999998889989188899999999 No 52 >>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=47.18 E-value=16 Score=17.16 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=23.1 Q ss_pred HCCCEEECCEEEECCCEEECCCCEEEECCHHH Q ss_conf 24978788889413534833884788611002 Q gi|254780187|r 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 117 ~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk 148 (206) +-.-+.|||+++. +...|+.||+|.+-.... T Consensus 78 s~nGt~vNg~~i~-~~~~L~~GD~i~iG~~~~ 108 (130) T 2eh0_A 78 ERSETYVNGKRVS-QPVQLRSGNRIIMGKNHV 108 (130) T ss_dssp SSSCEEETTEECC-SCEECCTTCBCEESSSCC T ss_pred CCCCEEECCEECC-CCEECCCCCEEEECCCEE T ss_conf 9887699996946-527879999999899879 No 53 >>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} (A:) Probab=46.08 E-value=20 Score=16.52 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=18.6 Q ss_pred CCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 49787888894135-34833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) -.-..|||+.+... .+.|+.||+|++-. T Consensus 102 ~NGT~vng~~i~~~~~~~L~~Gd~I~iG~ 130 (149) T 1gxc_A 102 GNGTFVNTELVGKGKRRPLNNNSEIALSL 130 (149) T ss_dssp SSCEEETTEECCTTCEEECCTTEEEEESS T ss_pred CCCEEEEEEEECCCCCCCCCCCCCEEEEE T ss_conf 88458620344266556688868233664 No 54 >>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane protein, P-type ATPase, HAD fold, hydrolase; HET: ADP TG1; 2.30A {Oryctolagus cuniculus} (A:1-21,A:119-227) Probab=45.97 E-value=7.6 Score=19.28 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=38.1 Q ss_pred HHHHH-CCCEEECCE--EEECCCEEECCCCEEEECCHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCEEE Q ss_conf 88762-497878888--941353483388478861100226999987752-1689996278812431899 Q gi|254780187|r 113 RQFVN-HRHVLVNGR--SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVAT 178 (206) Q Consensus 113 rq~v~-hg~i~vng~--~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~-~~~~~P~wLevd~~~l~g~ 178 (206) +.++. .-++..||+ ...+|+-.|.+||+|.+++..+-- .+. .-..--..+.+|...++|. T Consensus 23 k~l~~~~a~ViR~g~~~~~~I~~~eLv~GDII~l~~Gd~IP------aDg~il~~e~~~l~VDES~LTGE 86 (130) T 1wpg_A 23 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP------ADIRILSIKSTTLRVDQSILTGE 86 (130) T ss_dssp GGGSCSEEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCC------SEEEEEEECSSCCEEECHHHHSC T ss_pred HCCCCCEEEEEECCCCEEEEEEHHHCCCCCEEEECCCCEEE------EEEEEEEEEECCEEEECCCCCCC T ss_conf 65799956999999636999718998808589999989996------23899997206848887625577 No 55 >>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, alternative splicing, ATP-binding, cell cycle, disease mutation; 3.00A {Homo sapiens} PDB: 3i6w_A (A:1-125) Probab=45.65 E-value=20 Score=16.57 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=19.4 Q ss_pred CCCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 4978788889413-534833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) -.-+.|||+++.. -++.|+.||+|.+-. T Consensus 82 ~nGt~vng~~i~~~~~~~L~~gd~i~~G~ 110 (125) T 3i6u_A 82 GNGTFVNTELVGKGKRRPLNNNSEIALSL 110 (125) T ss_dssp SSCEEETTEECCTTCEEECCTTEEEEESS T ss_pred CCCCEECCEEECCCCEEECCCCCEEEECC T ss_conf 78877998993588648756899897545 No 56 >>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei} (A:) Probab=45.13 E-value=7.7 Score=19.22 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=34.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHCCCEEECCEEEEC---CCEEECCCCEEEECC Q ss_conf 344302689999988888998621212478---87887624978788889413---534833884788611 Q gi|254780187|r 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIF---AARQFVNHRHVLVNGRSVNI---GSYRCKEGDVIEVKQ 145 (206) Q Consensus 81 ~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~---~Arq~v~hg~i~vng~~v~~---ps~~~k~gd~I~~~~ 145 (206) .|.|...++..|+.+.- +++.... ..-.+-.+=.|.|||+-++. +.+.++.||.|.+-+ T Consensus 33 ~~~Tv~~ll~~L~~~~p------~~~~~l~~~~~~~~~r~~i~v~VN~~~v~~~~~~~t~L~~gDeV~ilp 97 (110) T 2k9x_A 33 TGTNLNGLVQLLKTNYV------KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110) T ss_dssp GGCCHHHHHHHHTTTTC------CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE T ss_pred CCCCHHHHHHHHHHHCC------CCHHHCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCEEEEEC T ss_conf 99869999999998767------303440244556650111899988956243888564859979999978 No 57 >>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} (A:1-9,A:226-361) Probab=44.75 E-value=19 Score=16.65 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=23.6 Q ss_pred HHHHHCCCEEECCEEE-------------ECCCE--EECCCCEEEECC Q ss_conf 8876249787888894-------------13534--833884788611 Q gi|254780187|r 113 RQFVNHRHVLVNGRSV-------------NIGSY--RCKEGDVIEVKQ 145 (206) Q Consensus 113 rq~v~hg~i~vng~~v-------------~~ps~--~~k~gd~I~~~~ 145 (206) |++-+.+++++||+++ +++.. .+++||.+.+=- T Consensus 65 R~~~~~~~vlI~G~~~pivGrI~MD~~~vdit~~p~~v~vGd~V~l~G 112 (145) T 2dy3_A 65 RHAQGKFSVTIDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFG 112 (145) T ss_dssp GGGTTTCEEEETTEEEEEESCCCSSCEEEEEETCTTCCCTTCEEEEES T ss_pred CCCCCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEC T ss_conf 415678289999999578738747608998878845589999999978 No 58 >>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} (A:) Probab=42.97 E-value=14 Score=17.62 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=23.3 Q ss_pred CCCEEECCEEEEC-CCEEECCCCEEEECCHH Q ss_conf 4978788889413-53483388478861100 Q gi|254780187|r 118 HRHVLVNGRSVNI-GSYRCKEGDVIEVKQKS 147 (206) Q Consensus 118 hg~i~vng~~v~~-ps~~~k~gd~I~~~~ks 147 (206) ..-+.|||+++.. ..+.|+.||+|.+-... T Consensus 82 ~nGt~vNg~~i~~~~~~~L~~GD~I~iG~~~ 112 (158) T 1dmz_A 82 TNVSYLNNNRMIQGTKFLLQDGDEIKIIWDK 112 (158) T ss_dssp TTCCEETTEECCSSEEEECCSSCCEESCCCT T ss_pred CCCEEECCEECCCCCEEECCCCCEEEECCCC T ss_conf 6853899999489986986699999987588 No 59 >>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A (A:) Probab=42.88 E-value=20 Score=16.56 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=19.2 Q ss_pred HCCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 249787888894135-34833884788611 Q gi|254780187|r 117 NHRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 117 ~hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) +.....|||.++..- .+.|+.||+|.|-+ T Consensus 162 S~NGT~vNg~~i~~~~~~~L~~Gd~I~iG~ 191 (205) T 3elv_A 162 SSNGTCLNNVVIPGARYIELRSGDVLTLSE 191 (205) T ss_dssp CSSCCEETTEECCBTSCEECCTTCEEESSS T ss_pred CCCCEEECCEECCCCCEEECCCCCEEEECC T ss_conf 887637999997799758899999999898 No 60 >>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} (A:28-164) Probab=42.54 E-value=24 Score=16.07 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=21.4 Q ss_pred CCEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 978788889413-534833884788611 Q gi|254780187|r 119 RHVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 119 g~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) .-+.|||+.+.. -.+.|+.||+|++-. T Consensus 80 ngt~vN~~~v~~~~~~~L~~gd~i~iG~ 107 (137) T 1g3g_A 80 NGTWLNGQKVEKNSNQLLSQGDEITVGV 107 (137) T ss_dssp SCEEETTEEECTTEEEECCTTCEEEESC T ss_pred CCEEECCEEECCCCCEECCCCCEEEECC T ss_conf 8728999994689861979999999899 No 61 >>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} (D:) Probab=42.32 E-value=24 Score=16.05 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=38.0 Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 03344302689999988888998621212478878876--24978788889413534833884788611 Q gi|254780187|r 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV--NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 79 ~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v--~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) -..|.|...|+..|+.|-. ..+..+ .+-.|.|||+.++ ++..++.||.|.+=+ T Consensus 22 ~~~~~tv~~l~~~L~~~~p-------------~~~~~l~~~~~~v~vn~~~v~-~~~~l~~gdeVai~P 76 (81) T 1fm0_D 22 AADFPTVEALRQHMAAQSD-------------RWALALEDGKLLAAVNQTLVS-FDHPLTDGDEVAFFP 76 (81) T ss_dssp CSCCSBHHHHHHHHHTTCH-------------HHHHHHCCTTCEEEETTEECC-TTCBCCTTCEEEEEC T ss_pred CCCCCCHHHHHHHHHHHCC-------------HHHHHHCCCCEEEECCCEECC-CCCCCCCCCEEEEEC T ss_conf 3899999999999987682-------------488862789589972845979-997859999999969 No 62 >>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} (A:) Probab=42.00 E-value=12 Score=18.10 Aligned_cols=59 Identities=25% Similarity=0.316 Sum_probs=39.9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 334430268999998888899862121247-887887624978788889413534833884788611 Q gi|254780187|r 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTI-FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~-~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ..|.|...++..|+.+.+. +..-. ...-.+..+=.|.|||+.+. .+..++.||.|.+=+ T Consensus 34 ~~~~tv~dl~~~L~~~~p~------l~~~l~~~~~~~~~~~~v~vN~~~v~-~~~~l~dgdeV~i~P 93 (98) T 1vjk_A 34 PEGARVRDLIEEIKKRHEK------FKEEVFGEGYDEDADVNIAVNGRYVS-WDEELKDGDVVGVFP 93 (98) T ss_dssp CTTCBHHHHHHHHHHHCGG------GGGSCBCSSSCTTSSBEEEETTBCCC-TTCBCCTTCEEEEES T ss_pred CCCCCHHHHHHHHHHHCCH------HHHHHHHHCCCCCCCEEEEECCEECC-CCCCCCCCCEEEEEC T ss_conf 9999899999999986706------78886411014565479986788869-897819999999979 No 63 >>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} (C:) Probab=41.92 E-value=20 Score=16.52 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=22.2 Q ss_pred CCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 49787888894135-34833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) -.-+.|||+.+..- -+.|+.||+|.|-. T Consensus 69 ~ngt~vNg~~i~~~~~~~L~~Gd~i~iG~ 97 (143) T 1yj5_C 69 VNPSTVGVHELKPGLSGSLSLGDVLYLVN 97 (143) T ss_dssp SSCCEETTEECCTTCEEEECTTCEEESSS T ss_pred CCCCEECCEECCCCEEEECCCCCEEEEEC T ss_conf 88437854880476389847999999936 No 64 >>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure initiative; 2.20A {Chlamydia trachomatis D} (A:) Probab=40.29 E-value=19 Score=16.63 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=11.1 Q ss_pred CEEECCEEEECCCEEECCCCEEEEC Q ss_conf 7878888941353483388478861 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) -+.|||+.++- ...|++||+|.+- T Consensus 70 gt~vng~~i~~-~~~L~~gd~i~iG 93 (106) T 3gqs_A 70 GVIVEGRKIEH-QSTLSANQVVALG 93 (106) T ss_dssp CCEETTEECSS-EEECCTTCCEEET T ss_pred CCEECCEECCC-CEECCCCCEEEEC T ss_conf 75179989588-2799999999999 No 65 >>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=40.00 E-value=18 Score=16.81 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.6 Q ss_pred CEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 787888894135-34833884788611 Q gi|254780187|r 120 HVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 120 ~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) -+.|||+.|..- .+.|..||+|.|-. T Consensus 84 Gt~vng~~i~~~~~~~L~~gd~i~iG~ 110 (145) T 2csw_A 84 GVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145) T ss_dssp CEEESSCBCCBTCCEECCSSCCEEESC T ss_pred EEEECCEECCCCCEEECCCCCEEEECC T ss_conf 689999996888207878998999177 No 66 >>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain protein, transport protein; HET: NAG B12; 2.60A {Homo sapiens} (A:274-399) Probab=39.94 E-value=20 Score=16.49 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=32.5 Q ss_pred CHHHHHHHHHHHHHH-H--HH------HCCCCCHHHHHHHHHCC---CEEECCEEEE--CCCEEECCCCEEEEC Q ss_conf 026899999888889-9--86------21212478878876249---7878888941--353483388478861 Q gi|254780187|r 85 SHNLISFLESRLDTI-V--YR------AKFVPTIFAARQFVNHR---HVLVNGRSVN--IGSYRCKEGDVIEVK 144 (206) Q Consensus 85 ~~~ll~~LE~RLD~~-v--~r------~g~a~t~~~Arq~v~hg---~i~vng~~v~--~ps~~~k~gd~I~~~ 144 (206) |..++..|+.=++.- - |- .+|..||..-++=...+ ++.|||+..+ +..|.++.||.|.+. T Consensus 49 g~t~~~~L~~a~~~~~~~~~~~~~~~~g~yi~sI~G~~~d~~~~~~W~~~vNg~~~~~ga~~~~l~dGD~I~w~ 122 (126) T 2pmv_A 49 GSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNEGVADYIPFNHEHITAN 122 (126) T ss_dssp CSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECSSCTTTCCCCTTCEEEEE T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEE T ss_conf 98399999999975899358887657870688662702587886379980389820147340444689989998 No 67 >>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} (A:) Probab=39.61 E-value=18 Score=16.86 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=17.7 Q ss_pred CEEECCEEEE---CCCEEECCCCEEEE Q ss_conf 7878888941---35348338847886 Q gi|254780187|r 120 HVLVNGRSVN---IGSYRCKEGDVIEV 143 (206) Q Consensus 120 ~i~vng~~v~---~ps~~~k~gd~I~~ 143 (206) .|.|||..|. .+++.++.||.|++ T Consensus 33 av~vN~~iv~k~~~~~~~l~~gD~iei 59 (66) T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILL 59 (66) T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECE T ss_pred EEEECCEECCHHHCCCCCCCCCCEEEE T ss_conf 999999993878828134899899999 No 68 >>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} (A:) Probab=37.78 E-value=28 Score=15.60 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=23.5 Q ss_pred HHHCCCEEECCEEEEC-CCEEECCCCEEEECCH Q ss_conf 7624978788889413-5348338847886110 Q gi|254780187|r 115 FVNHRHVLVNGRSVNI-GSYRCKEGDVIEVKQK 146 (206) Q Consensus 115 ~v~hg~i~vng~~v~~-ps~~~k~gd~I~~~~k 146 (206) +-+..-+.|||..+.. -.+.++.||+|.+-.. T Consensus 75 ~~S~nGt~vng~~i~~~~~~~L~~gd~I~ig~~ 107 (127) T 1g6g_A 75 DISTNGTWLNGQKVEKNSNQLLSQGDEITVGVG 107 (127) T ss_dssp ECCSSCCEETTEECCTTCCEECCTTCEEEECTT T ss_pred CCCCCCEEECCEECCCCCCEECCCCCEEEECCC T ss_conf 899687599999978998569899999998998 No 69 >>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} (A:) Probab=36.32 E-value=20 Score=16.60 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=21.9 Q ss_pred CCEEECCEEEEC-CCEEECCCCEEEECCH Q ss_conf 978788889413-5348338847886110 Q gi|254780187|r 119 RHVLVNGRSVNI-GSYRCKEGDVIEVKQK 146 (206) Q Consensus 119 g~i~vng~~v~~-ps~~~k~gd~I~~~~k 146 (206) .-+.|||.++.. -.+.++.||+|.|-.. T Consensus 107 NGt~vNg~~i~~~~~~~L~~Gd~I~iG~~ 135 (182) T 1qu5_A 107 NVSYLNNNRMIQGTKFLLQDGDEIKIIWD 135 (182) T ss_dssp SCCEETTEECCSSEEEECCTTBCCEEEEE T ss_pred CCEEECCEECCCCCEEECCCCCEEEECCC T ss_conf 85599999948997388679999998768 No 70 >>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} (A:) Probab=35.85 E-value=15 Score=17.30 Aligned_cols=24 Identities=0% Similarity=-0.031 Sum_probs=11.1 Q ss_pred EEECCEEEECC-CEEECCCCEEEEC Q ss_conf 87888894135-3483388478861 Q gi|254780187|r 121 VLVNGRSVNIG-SYRCKEGDVIEVK 144 (206) Q Consensus 121 i~vng~~v~~p-s~~~k~gd~I~~~ 144 (206) ..|||.++... -+.|+.||+|.+- T Consensus 102 t~vng~~i~~~~~~~L~~Gd~I~~G 126 (140) T 2jpe_A 102 TFLGHIRLEPHKPQQIPIDSTVSFG 126 (140) T ss_dssp EESSSCEECSSSCCEECTTCCBBCS T ss_pred CEECEEEECCCCEEECCCCCEEEEC T ss_conf 3897188046967799999999991 No 71 >>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} (A:) Probab=35.77 E-value=28 Score=15.64 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=19.1 Q ss_pred CCCEEECCEEEECC-CEEECCCCEEEECC Q ss_conf 49787888894135-34833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIG-SYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~p-s~~~k~gd~I~~~~ 145 (206) -.-..|||+.+..- .+.|..||+|++-+ T Consensus 116 ~nGt~vNg~~i~~~~~~~L~~gd~i~~G~ 144 (158) T 3els_A 116 SNGTCLNNVVIPGARYIELRSGDVLTLSE 144 (158) T ss_dssp SSCCEETTEECCTTCCEECCTTEEEESSS T ss_pred CCCEEECCEECCCCCEEECCCCCEEEECC T ss_conf 77759999998899747878999999767 No 72 >>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} (A:1-10,A:222-357) Probab=32.19 E-value=27 Score=15.72 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=22.9 Q ss_pred HHHHHCCCEEECCEEE-------------ECCCE-EECCCCEEEECCHHH Q ss_conf 8876249787888894-------------13534-833884788611002 Q gi|254780187|r 113 RQFVNHRHVLVNGRSV-------------NIGSY-RCKEGDVIEVKQKSK 148 (206) Q Consensus 113 rq~v~hg~i~vng~~v-------------~~ps~-~~k~gd~I~~~~ksk 148 (206) |++-+.+.+++||+++ +++.. .+++||.+++=...- T Consensus 67 r~~sn~~~v~i~G~~~pivGrI~MD~~~vdit~~~~v~vGD~V~l~G~~i 116 (146) T 1rcq_A 67 RHAADGTLVFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNV 116 (146) T ss_dssp TTCCTTCEEEETTEEEEBCSCCCSSCEEEECTTCTTCCTTCEEEEESSSS T ss_pred CCCCCCCEEEECCEEEEEECEECCCEEEEECCCCCCCCCCCEEEEECCCC T ss_conf 10468829999999937857634043899888997789999999978999 No 73 >>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* (D:) Probab=32.17 E-value=34 Score=15.03 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=37.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 334430268999998888899862121247887887624978788889413534833884788611 Q gi|254780187|r 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 80 ~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ..|.|..-|+..|+.+.... .-.+-.+.|||+.+. ....++.||.|++=+ T Consensus 23 ~~~~tv~~l~~~L~~~~~~~---------------~~~~~~v~vN~~~v~-~~~~l~dgDeVai~P 72 (77) T 2q5w_D 23 EQALTVQQFEDLLFERYPQI---------------NNKKFQVAVNEEFVQ-KSDFIQPNDTVALIP 72 (77) T ss_dssp SSCEEHHHHHHHHHHHCGGG---------------TTCCCEEEETTEEEC-TTSEECTTCEEEEEC T ss_pred CCCCCHHHHHHHHHHHCCCC---------------CCHHHHHHCCCEECC-CCCCCCCCCEEEEEC T ss_conf 99998999999999877855---------------113313410880768-886709989999979 No 74 >>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A (A:) Probab=32.10 E-value=32 Score=15.24 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=16.6 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECC Q ss_conf 978788889413534833884788611 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~ 145 (206) ..+.|||+.+. ...|+.||+|.+-. T Consensus 117 nGt~vng~~i~--~~~L~~Gd~i~lG~ 141 (162) T 2kfu_A 117 NGTYVNREPVD--SAVLANGDEVQIGK 141 (162) T ss_dssp SCEEETTBCCS--EEECCSSCEEEETT T ss_pred CCCEECCEECC--CEECCCCCEEEECC T ss_conf 65189999996--34999999999999 No 75 >>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A (A:) Probab=31.81 E-value=27 Score=15.71 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=27.6 Q ss_pred HHHHCCCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 876249787888894135348338847886110 Q gi|254780187|r 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 114 q~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) ++|..|.=.|-++.-|-.--.+++||.|.+..+ T Consensus 13 ~~I~~G~KtIEiRl~d~kr~~ik~GD~I~F~n~ 45 (109) T 2z0t_A 13 ELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGG 45 (109) T ss_dssp HHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGG T ss_pred HHHHCCCCEEEEECCHHHHHHCCCCCEEEEECC T ss_conf 998769988999827767862899999999478 No 76 >>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* (A:1-30,A:243-379) Probab=30.30 E-value=32 Score=15.27 Aligned_cols=35 Identities=34% Similarity=0.353 Sum_probs=22.8 Q ss_pred HHHHHCCCEEECCEEEECC-------------CE-EECCCCEEEECCHH Q ss_conf 8876249787888894135-------------34-83388478861100 Q gi|254780187|r 113 RQFVNHRHVLVNGRSVNIG-------------SY-RCKEGDVIEVKQKS 147 (206) Q Consensus 113 rq~v~hg~i~vng~~v~~p-------------s~-~~k~gd~I~~~~ks 147 (206) |.+-+.+.+++||++..+- .. .+++||.+++=-.. T Consensus 88 R~~sn~~~VlI~G~~~pIvGrIsMD~~mVDitd~~~v~vGD~V~l~G~~ 136 (167) T 2rjg_A 88 RAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEG 136 (167) T ss_dssp TTCCTTCEEEETTEEEEBCSCCCSSCEEEECCTTCCCCTTCEEEEEBTT T ss_pred EECCCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCEEEEECCC T ss_conf 3457980899999991543186443589988898788999999995899 No 77 >>1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous scattering phasing, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa} (A:) Probab=29.28 E-value=12 Score=17.89 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=18.8 Q ss_pred CCEEECCEEEECCCEEECCCCEEEECCH Q ss_conf 9787888894135348338847886110 Q gi|254780187|r 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 (206) Q Consensus 119 g~i~vng~~v~~ps~~~k~gd~I~~~~k 146 (206) |-|..|...=...+..+++||+||+-.+ T Consensus 4 GsVpAn~e~gq~Tglilk~GDvIsiVAk 31 (121) T 1l7l_A 4 GEVLANNEAGQVTSIIYNPGDVITIVAA 31 (121) T ss_dssp EEEETTCTTCEEEEEEECTTCCEEEEEE T ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEE T ss_conf 5245444479635788548989998460 No 78 >>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (D:1-109) Probab=28.84 E-value=26 Score=15.78 Aligned_cols=15 Identities=53% Similarity=0.804 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 689999988888998 Q gi|254780187|r 87 NLISFLESRLDTIVY 101 (206) Q Consensus 87 ~ll~~LE~RLD~~v~ 101 (206) +.=.+||+||.++|| T Consensus 95 ~v~~fl~RRLqtiv~ 109 (109) T 3jyv_D 95 KVEDFLERRLQTQVY 109 (109) T ss_dssp HHHHHHHHBHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 788999877999999 No 79 >>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:1-18,A:241-384) Probab=28.69 E-value=39 Score=14.65 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=22.7 Q ss_pred HHHHHCCCEEECCEEE-------------ECCCE--EECCCCEEEECC Q ss_conf 8876249787888894-------------13534--833884788611 Q gi|254780187|r 113 RQFVNHRHVLVNGRSV-------------NIGSY--RCKEGDVIEVKQ 145 (206) Q Consensus 113 rq~v~hg~i~vng~~v-------------~~ps~--~~k~gd~I~~~~ 145 (206) |.+=+.+++++||+++ ++... .+++||.+++=- T Consensus 74 R~l~~~~~vlI~G~~~PivGrI~MD~~mVDvt~~p~~~~vGD~V~l~G 121 (162) T 1xfc_A 74 RSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFG 121 (162) T ss_dssp GGGTTTCEEEETTEEEEEESCCCSSCEEEEEESSSCCCCTTCEEEEEC T ss_pred CCCCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEC T ss_conf 104778589999999578448856627998148877799999999970 No 80 >>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} (A:) Probab=28.37 E-value=40 Score=14.61 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=18.8 Q ss_pred CCCEEECCEEEECC---------CEEECCCCEEEECC Q ss_conf 49787888894135---------34833884788611 Q gi|254780187|r 118 HRHVLVNGRSVNIG---------SYRCKEGDVIEVKQ 145 (206) Q Consensus 118 hg~i~vng~~v~~p---------s~~~k~gd~I~~~~ 145 (206) ..-+.|||+.+... .+.|..||+|.+-+ T Consensus 75 ~nGt~vng~~l~~~~~~~~~~~~~~~L~~gd~I~iG~ 111 (139) T 1mzk_A 75 LNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGT 111 (139) T ss_dssp SSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSS T ss_pred CCCCEECCEECCCCCCCCCCCCCEEECCCCCEEEECC T ss_conf 6774899999756334645689647889999999789 No 81 >>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} (A:1-26,A:242-376) Probab=27.34 E-value=41 Score=14.50 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=24.0 Q ss_pred HHHHHCCCEEECCEEEECCC---------------EEECCCCEEEECCHHHH Q ss_conf 88762497878888941353---------------48338847886110022 Q gi|254780187|r 113 RQFVNHRHVLVNGRSVNIGS---------------YRCKEGDVIEVKQKSKQ 149 (206) Q Consensus 113 rq~v~hg~i~vng~~v~~ps---------------~~~k~gd~I~~~~ksk~ 149 (206) |.+=+.+++++||+++-+-+ ..+++||.|++=-.... T Consensus 82 R~l~~~~~vli~G~~~pIvGrIsMD~~~vDvtdi~~~v~vGD~V~l~G~~~~ 133 (161) T 3kw3_A 82 RILSNKGTVYFNGHKLPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQP 133 (161) T ss_dssp GGGTTTCEEEETTEEEEBCSCCCSSCEEEECTTCSSCCCTTCEEEEEBTTBC T ss_pred CCCCCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCCCCEEEEEECCCC T ss_conf 2457886799999980794073342489977788777999999999809999 No 82 >>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} (A:207-365) Probab=26.63 E-value=43 Score=14.42 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 899999988485551565479999999875303344302689999988888 Q gi|254780187|r 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 (206) Q Consensus 48 yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~ 98 (206) |++.-.|+ |.+ ..+..+++.+|.+..-.| +.-++.||.||+- T Consensus 18 Ytleafe~----Y~~-k~sd~~l~~l~qeii~~K----q~HIq~Le~rL~~ 59 (159) T 3fse_A 18 YSLEALEK----YTE-KESDVEAKALFQEXITNK----QRHIEYLETYLTR 59 (159) T ss_dssp HHHHHHHH----HHH-HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH T ss_pred CCHHHHHH----HHH-HCCCHHHHHHHHHHHCCH----HHHHHHHHHHHHH T ss_conf 41899999----874-423826789999970078----9999999999986 No 83 >>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii OT3} (A:317-397) Probab=26.41 E-value=16 Score=17.17 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=18.3 Q ss_pred CEEECCEEEECCCEEECCCCEEEECCHH Q ss_conf 7878888941353483388478861100 Q gi|254780187|r 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 (206) Q Consensus 120 ~i~vng~~v~~ps~~~k~gd~I~~~~ks 147 (206) .+.+||++|. .++.|+.||+|+|-.++ T Consensus 54 ~~~~~g~~v~-~d~~L~dgDvV~Iit~k 80 (81) T 1wxq_A 54 INARTKRRVG-EDYELQFNDIVKIVSVT 80 (81) T ss_dssp EETTTCSBCC-TTCCCCTTEEEEEEEC- T ss_pred EECCCCEEEC-CCCEECCCCEEEEEECC T ss_conf 8667762856-98485689889999577 No 84 >>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} (A:) Probab=24.65 E-value=37 Score=14.82 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=8.5 Q ss_pred EEECCEEEEC-CCEEECCCCEEEE Q ss_conf 8788889413-5348338847886 Q gi|254780187|r 121 VLVNGRSVNI-GSYRCKEGDVIEV 143 (206) Q Consensus 121 i~vng~~v~~-ps~~~k~gd~I~~ 143 (206) +.|||+.+.. -...|..||+|.+ T Consensus 78 t~vng~~i~~~~~~~L~~gd~i~i 101 (118) T 1uht_A 78 TLLNSNALDPETSVNLGDGDVIKL 101 (118) T ss_dssp CEESSSBCCTTCEEECCTTEEEEE T ss_pred CEECCEECCCCCEEECCCCCEEEE T ss_conf 123886948994698999999999 No 85 >>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} (A:) Probab=23.86 E-value=34 Score=15.02 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.5 Q ss_pred CEEEECCCEEECCCCEEEECCHHH Q ss_conf 889413534833884788611002 Q gi|254780187|r 125 GRSVNIGSYRCKEGDVIEVKQKSK 148 (206) Q Consensus 125 g~~v~~ps~~~k~gd~I~~~~ksk 148 (206) +....+|+..|.+||+|.+++... T Consensus 32 ~~~~~i~~~~l~~GDii~i~~G~~ 55 (124) T 2kij_A 32 LSEEQVDVELVQRGDIIKVVPGGK 55 (124) T ss_dssp CEEEEEETTTCCTTCEEECCTTCB T ss_pred CEEEEEEHHHCCCCCEEEEECCCE T ss_conf 305997889978898999912867 No 86 >>1hcx_A Major autolysin; choline-binding domain, cell WALL attachment; HET: TPT DDQ; 2.6A {Streptococcus pneumoniae} (A:86-127) Probab=23.47 E-value=39 Score=14.65 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=19.2 Q ss_pred EEECCEEEECCCEEECCCCEEEEC Q ss_conf 878888941353483388478861 Q gi|254780187|r 121 VLVNGRSVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 121 i~vng~~v~~ps~~~k~gd~I~~~ 144 (206) +.-+|...+.|+|.+.|.-.|+++ T Consensus 19 l~~dGt~Adkp~FtvEPdGLIT~K 42 (42) T 1hcx_A 19 LKPDGTLADRPEFTVEPDGLITVK 42 (42) T ss_dssp ECTTSCBCSSCCEEECTTCCEEEC T ss_pred ECCCCCCCCCCCEEECCCCEEECC T ss_conf 778861046873235688337619 No 87 >>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} (A:) Probab=23.40 E-value=49 Score=14.03 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=14.1 Q ss_pred CEEECCEEEEC-CCEEECCCCEEEECC Q ss_conf 78788889413-534833884788611 Q gi|254780187|r 120 HVLVNGRSVNI-GSYRCKEGDVIEVKQ 145 (206) Q Consensus 120 ~i~vng~~v~~-ps~~~k~gd~I~~~~ 145 (206) -+.|||+.+.- -.+.|..||+|.+-. T Consensus 71 gt~vng~~i~~~~~~~L~~gd~i~ig~ 97 (110) T 2brf_A 71 PSTTGTQELKPGLEGSLGVGDTLYLVN 97 (110) T ss_dssp CCEEC-CBCCTTCEEEEETTCEEEEET T ss_pred CCEEEEEEECCCCEEECCCCCEEEEEC T ss_conf 638989994078479968999999908 No 88 >>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} (A:1-15,A:239-375) Probab=23.33 E-value=49 Score=14.02 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=20.6 Q ss_pred HHCCCEEECCEEEECCCEE------------ECCCCEEEEC Q ss_conf 6249787888894135348------------3388478861 Q gi|254780187|r 116 VNHRHVLVNGRSVNIGSYR------------CKEGDVIEVK 144 (206) Q Consensus 116 v~hg~i~vng~~v~~ps~~------------~k~gd~I~~~ 144 (206) .+.+++++||+++-+-+-. ++.||.+++= T Consensus 75 l~~~~V~I~G~~~pIvGrI~MD~~~VDit~~~~vGd~V~L~ 115 (152) T 3hur_A 75 MQKSSVIINGKRMPIIGRITMDQTMVKLDRKYPIGTRVTLI 115 (152) T ss_dssp EEEEEEEETTEEEEBCSCCCSSCEEEECSSCCCTTCEEEEE T ss_pred CCCCEEEECCEEEEEEEEECCCEEEEECCCCCCCCCEEEEE T ss_conf 47988999999988874883452899898999999999999 No 89 >>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* (A:399-532) Probab=23.20 E-value=24 Score=16.04 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.2 Q ss_pred CCHHHHHHHHHCCCEEECCEEEECCCE Q ss_conf 247887887624978788889413534 Q gi|254780187|r 107 PTIFAARQFVNHRHVLVNGRSVNIGSY 133 (206) Q Consensus 107 ~t~~~Arq~v~hg~i~vng~~v~~ps~ 133 (206) -||.|--|.|.||-.+-||+.||..-+ T Consensus 54 ISR~QlWQWi~hg~~l~dG~~vt~~~v 80 (134) T 3cuz_A 54 ISRTSIWQWIHHQKTLSNGKPVTKALF 80 (134) T ss_dssp HHHHHHHHHHHTTCBCTTSCBCCHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 999999999976777788847269999 No 90 >>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} (I:) Probab=22.85 E-value=34 Score=15.02 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.0 Q ss_pred EECCCEEECCCCEEEECC Q ss_conf 413534833884788611 Q gi|254780187|r 128 VNIGSYRCKEGDVIEVKQ 145 (206) Q Consensus 128 v~~ps~~~k~gd~I~~~~ 145 (206) +--|+..|++||+|.|.+ T Consensus 43 aHD~~~~~~~GD~V~I~e 60 (89) T 1qd7_I 43 AHDEHNEAKVGDIVKIME 60 (89) T ss_pred EECCCCCCCCCCEEEEEE T ss_conf 999999899998999998 No 91 >>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} (B:1-118) Probab=22.54 E-value=41 Score=14.50 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.1 Q ss_pred EEECCCEEECCCCEEEEC Q ss_conf 941353483388478861 Q gi|254780187|r 127 SVNIGSYRCKEGDVIEVK 144 (206) Q Consensus 127 ~v~~ps~~~k~gd~I~~~ 144 (206) -++++.+.+++||.|.+. T Consensus 49 a~~~~~~~v~~GD~i~v~ 66 (118) T 1y43_B 49 AYDFSDITISEGDSIKVT 66 (118) T ss_dssp CEEETTCCCCTTCEEEEE T ss_pred CCCCCCCCCCCCCEEEEE T ss_conf 415266413899999999 No 92 >>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* (A:309-414) Probab=21.89 E-value=45 Score=14.24 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=17.6 Q ss_pred CCCCHHHHHHHHHCCC-E-EECCEEEE--CCCEEECCCCEEEE Q ss_conf 2124788788762497-8-78888941--35348338847886 Q gi|254780187|r 105 FVPTIFAARQFVNHRH-V-LVNGRSVN--IGSYRCKEGDVIEV 143 (206) Q Consensus 105 ~a~t~~~Arq~v~hg~-i-~vng~~v~--~ps~~~k~gd~I~~ 143 (206) |..||..-.+-=.-|- + .|||+..+ +..|.++.||.|.+ T Consensus 59 yV~sI~G~~~~~~s~W~~y~vNG~~~~~g~~~~~l~~GD~I~w 101 (106) T 2bb6_A 59 FLTSVLGRKAGEREFWQVLRDPDTPLQQGIADYRPKDGETIEL 101 (106) T ss_dssp EEEEETTEECCTTEEEEEEETTTEECSSCTTTCCCCTTCEEEE T ss_pred EEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEEEE T ss_conf 6887735126886268986079997445734034468997999 No 93 >>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} (A:) Probab=20.89 E-value=46 Score=14.20 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=9.1 Q ss_pred CCCEEECCCCEEEEC Q ss_conf 353483388478861 Q gi|254780187|r 130 IGSYRCKEGDVIEVK 144 (206) Q Consensus 130 ~ps~~~k~gd~I~~~ 144 (206) -.+|.|.-||+|+|. T Consensus 71 gl~~~L~dgDvV~I~ 85 (93) T 2eki_A 71 GKDHTLEDEDVIQIV 85 (93) T ss_dssp CSSCCCCSSEEECEE T ss_pred CCCCEECCCCEEEEE T ss_conf 876280699999999 No 94 >>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* (A:) Probab=20.76 E-value=55 Score=13.69 Aligned_cols=35 Identities=14% Similarity=-0.044 Sum_probs=17.0 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEE Q ss_conf 88888998621212478878876249787888894 Q gi|254780187|r 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 (206) Q Consensus 94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v 128 (206) ++||..+.+.+...|+.+++..|.+.+..+|+.-. T Consensus 15 ~~~~~~~~~~~~~~s~~~~~~~i~~~yd~~~d~~~ 49 (276) T 2wa2_A 15 PTLGEIWKRKLNQLDAKEFMAYRRRFVVEVDRNEA 49 (276) T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCCCC----- T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHEEEEEECCHHH T ss_conf 72789999875102589998766236999430078 No 95 >>1rvx_A Hemagglutinin; viral protein; HET: SIA GAL NAG; 2.20A {Influenza a virus} (A:92-265) Probab=20.68 E-value=44 Score=14.33 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=9.8 Q ss_pred EECCEE--EECCCEEECCCCEEEEC Q ss_conf 788889--41353483388478861 Q gi|254780187|r 122 LVNGRS--VNIGSYRCKEGDVIEVK 144 (206) Q Consensus 122 ~vng~~--v~~ps~~~k~gd~I~~~ 144 (206) .|||+. +++==-+|+|||.|.+. T Consensus 131 ~V~gq~GRi~~yWtilkPgdti~f~ 155 (174) T 1rvx_A 131 KVRDQAGRMNYYWTLLKPGDTIIFE 155 (174) T ss_dssp CBTTBSCEEEEEEEEECTTCEEEEE T ss_pred CCCCCCCEEEEEEEEECCCCEEEEE T ss_conf 7267631389999987789879997 Done!