HHSEARCH alignment of GI: 254780187 and SCOP domain: d1c06a_

Alignment
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=0  Score=429.72  Aligned_cols=158  Identities=44%  Similarity=0.757  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEE
Q ss_conf             41358999999884855515654799999998753033443026899999888889986212124788788762497878
Q gi|254780187|r   44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV  123 (206)
Q Consensus        44 k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~v  123 (206)
                      |.|+||+||+||||+||+|| |+||||++||++|.+++|+||++||++||+||||+|||+|||+|+++|||+|+||||+|
T Consensus         2 K~S~yg~qL~eKQK~r~~YG-i~EkQf~~~~~~A~~~~g~tg~~ll~llE~RlD~vv~r~gfa~t~~~arQ~v~Hghi~v   80 (159)
T d1c06a_           2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILV   80 (159)
T ss_dssp             CSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHTTSSSTHHHHHHHHHHHCHHHHHHHHTSSSSHHHHHHHHHTSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEC
T ss_conf             72678999999999999809-65899999999998658975042899999875455105763278888998887356371


Q ss_pred             CCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             88894135348338847886110022699998775216899962788124318999967884211246753466316775
Q gi|254780187|r  124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF  203 (206)
Q Consensus       124 ng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEy  203 (206)
                      ||++||||||.|+|||+|+++++++++..+.++.+ ....+|+||++|.++++|++++.|++ +|  +|+.+||+|||||
T Consensus        81 Ngk~v~iPSy~vk~GDvIsvkeksk~~~~v~~~~~-~~~~~P~wL~vD~~~l~g~v~~~P~r-~e--Ip~~ine~LVVEy  156 (159)
T d1c06a_          81 DGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPER-SE--LPAEINEALIVEF  156 (159)
T ss_dssp             TTEECCCSSCCCCSSCEEEECGGGSSCHHHHHHTT-CCCCCCSSEEEETTTTEEEECSCCCT-TT--SCSSCCCHHHHHH
T ss_pred             CCEEEEECCEEECCCCEEEECCCCCHHHHHHHHHH-CCCCCCCEEEEECCCCEEEEEEECCH-HH--CCCCCCCCEEEEE
T ss_conf             33599851215227848861200013899999987-13779987999866689999970178-88--8988770489986


Q ss_pred             ECC
Q ss_conf             049
Q gi|254780187|r  204 YSR  206 (206)
Q Consensus       204 YSR  206 (206)
                      |||
T Consensus       157 YSR  159 (159)
T d1c06a_         157 YSR  159 (159)
T ss_dssp             HHC
T ss_pred             CCC
T ss_conf             469


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]