HHSEARCH alignment of GI: 254780187 and SCOP domain: d1kska3

Alignment

Probab=98.86  E-value=9.8e-10  Score=80.87  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             88888998621212478878876249787888894135348338847886110
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      ||||.++...|++ |+.+|+++|.+|+|+|||+.|+.|||.|+++|.|++..+
T Consensus         1 mRLdk~l~~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~dg~   52 (59)
T d1kska3           1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN   52 (59)
T ss_dssp             EEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred             CCHHHHHHHCCCC-CHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEEECCE
T ss_conf             9489999885887-999999999769189899996259869499999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Escherichia coli [TaxId: 562]