HHSEARCH alignment of GI: 254780187 and SCOP domain: d1vioa2

Alignment
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=98.87  E-value=9.1e-10  Score=81.07  Aligned_cols=52  Identities=25%  Similarity=0.276  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCH
Q ss_conf             88888998621212478878876249787888894135348338847886110
Q gi|254780187|r   94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK  146 (206)
Q Consensus        94 ~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~k  146 (206)
                      +|||.+|...+++ ||.+|+++|.+|+|+|||+.++.||+.|++||.|++..+
T Consensus         2 mRLD~~Ls~~~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~g~   53 (58)
T d1vioa2           2 LRLDKFIAENVGL-TRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE   53 (58)
T ss_dssp             EEHHHHHHHHHTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE
T ss_pred             CHHHHHHHHCCCC-CHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCE
T ss_conf             2799999985897-899999999859289999994778879899999999998


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Haemophilus influenzae [TaxId: 727]