BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] (206 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] gi|254039864|gb|ACT56660.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] Length = 206 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK Sbjct: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH Sbjct: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV Sbjct: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIPSSLKDVPYPVIMQPNLVVEFYSR Sbjct: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 >gi|315122617|ref|YP_004063106.1| 30S ribosomal protein S4 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496019|gb|ADR52618.1| 30S ribosomal protein S4 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 206 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/206 (87%), Positives = 192/206 (93%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSKHKIDRRI ENLWGRPKSPVN RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK Sbjct: 1 MSKRESSKHKIDRRISENLWGRPKSPVNVRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FRSIFKEADR +GDTS NLISFLESRLDTIVYRAKFVPT+FAARQFVNHRH Sbjct: 61 YYGDVGEKQFRSIFKEADRCKGDTSQNLISFLESRLDTIVYRAKFVPTVFAARQFVNHRH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG SVNIGSYRCK GDVIEVK KSK+L SVL + QL ERDVPEYIS +H+NMVATFV Sbjct: 121 VLVNGFSVNIGSYRCKAGDVIEVKSKSKKLTSVLGSVQLPERDVPEYISADHENMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +IP+SL +VPYPVIM+PNLVVEFYSR Sbjct: 181 KIPTSLSEVPYPVIMEPNLVVEFYSR 206 >gi|227822183|ref|YP_002826154.1| 30S ribosomal protein S4 [Sinorhizobium fredii NGR234] gi|254764606|sp|C3MD82|RS4_RHISN RecName: Full=30S ribosomal protein S4 gi|227341183|gb|ACP25401.1| 30S ribosomal protein S4 [Sinorhizobium fredii NGR234] Length = 205 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 160/206 (77%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI EK+FR+IF EA R +GDT NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDIREKQFRAIFAEASRRKGDTPENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEVK+KSKQL SVLE+ QLAERDVP+YI +H+ MVATFV Sbjct: 121 VKVNGVRVNIGSYRCKAGDVIEVKEKSKQLVSVLESVQLAERDVPDYIEADHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYPV+M+P+LVVEFYSR Sbjct: 181 RVP-ALTDVPYPVVMEPHLVVEFYSR 205 >gi|15965540|ref|NP_385893.1| 30S ribosomal protein S4 [Sinorhizobium meliloti 1021] gi|307302660|ref|ZP_07582416.1| ribosomal protein S4 [Sinorhizobium meliloti BL225C] gi|307318507|ref|ZP_07597941.1| ribosomal protein S4 [Sinorhizobium meliloti AK83] gi|26399445|sp|Q92PG9|RS4_RHIME RecName: Full=30S ribosomal protein S4 gi|15074721|emb|CAC46366.1| Probable 30S ribosomal subunit protein S4 [Sinorhizobium meliloti 1021] gi|306895847|gb|EFN26599.1| ribosomal protein S4 [Sinorhizobium meliloti AK83] gi|306903024|gb|EFN33615.1| ribosomal protein S4 [Sinorhizobium meliloti BL225C] Length = 205 Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 159/206 (77%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI EK+FR+IF EA R +GDT NL+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDIREKQFRAIFAEASRRKGDTPENLVGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEVK+KSKQL +VLEA QLAERDVP+YI +H+ MVATFV Sbjct: 121 VKVNGVRVNIGSYRCKPGDVIEVKEKSKQLVTVLEAVQLAERDVPDYIEADHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYPV+M+P+LVVEFYSR Sbjct: 181 RVP-ALSDVPYPVVMEPHLVVEFYSR 205 >gi|150396726|ref|YP_001327193.1| 30S ribosomal protein S4 [Sinorhizobium medicae WSM419] gi|171460831|sp|A6U9M8|RS4_SINMW RecName: Full=30S ribosomal protein S4 gi|150028241|gb|ABR60358.1| RNA-binding S4 domain protein [Sinorhizobium medicae WSM419] Length = 205 Score = 331 bits (849), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 159/206 (77%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI EK+FR+IF EA R +GDT NL+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDIREKQFRAIFAEASRRKGDTPENLVGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEVK+ SKQL +VLEA QLAERDVP+YI +H+ MVATFV Sbjct: 121 VKVNGVRVNIGSYRCKPGDVIEVKESSKQLVTVLEAVQLAERDVPDYIEADHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYPVIM+P+LVVEFYSR Sbjct: 181 RVP-ALADVPYPVIMEPHLVVEFYSR 205 >gi|190891998|ref|YP_001978540.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 652] gi|218509562|ref|ZP_03507440.1| 30S ribosomal protein S4 [Rhizobium etli Brasil 5] gi|218516811|ref|ZP_03513651.1| 30S ribosomal protein S4 [Rhizobium etli 8C-3] gi|218679612|ref|ZP_03527509.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 894] gi|226699110|sp|B3PPT3|RS4_RHIE6 RecName: Full=30S ribosomal protein S4 gi|190697277|gb|ACE91362.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 652] gi|327190532|gb|EGE57626.1| 30S ribosomal protein S4 [Rhizobium etli CNPAF512] Length = 205 Score = 330 bits (847), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 157/206 (76%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL +VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVTVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|222148432|ref|YP_002549389.1| 30S ribosomal protein S4 [Agrobacterium vitis S4] gi|254764562|sp|B9JVV3|RS4_AGRVS RecName: Full=30S ribosomal protein S4 gi|221735420|gb|ACM36383.1| 30S ribosomal protein S4 [Agrobacterium vitis S4] Length = 205 Score = 330 bits (847), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 158/206 (76%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRASSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+ + EA+R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRATYDEANRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV+QKSKQLA VLEA+QLAERDVP+YI V+H+ MVATFV Sbjct: 121 VSVNGVKVNIGSYRCKAGDVIEVRQKSKQLAIVLEATQLAERDVPDYIEVDHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY VIM+P LVVEFYSR Sbjct: 181 RVP-TLSDVPYAVIMEPQLVVEFYSR 205 >gi|15889161|ref|NP_354842.1| 30S ribosomal protein S4 [Agrobacterium tumefaciens str. C58] gi|26399422|sp|Q8UEA0|RS4_AGRT5 RecName: Full=30S ribosomal protein S4 gi|15156975|gb|AAK87627.1| 30S ribosomal protein S4 [Agrobacterium tumefaciens str. C58] Length = 205 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 155/206 (75%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG++ EK+FR+ F EA+R +GDTS NLIS LESRLD IVYRAKFVPT+FA+RQF+NH H Sbjct: 61 YYGELREKQFRATFDEANRRKGDTSENLISLLESRLDAIVYRAKFVPTVFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV+QKSKQL +VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVRQKSKQLVTVLEAVQLAERDVPDYIEVDHNKMVATYA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P SL DVPYPV+M+P+LVVEFYSR Sbjct: 181 RVP-SLSDVPYPVVMEPHLVVEFYSR 205 >gi|209549541|ref|YP_002281458.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226699111|sp|B5ZRF1|RS4_RHILW RecName: Full=30S ribosomal protein S4 gi|209535297|gb|ACI55232.1| RNA-binding S4 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 205 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/206 (76%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|116252370|ref|YP_768208.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. viciae 3841] gi|152112254|sp|Q1MG11|RS4_RHIL3 RecName: Full=30S ribosomal protein S4 gi|115257018|emb|CAK08112.1| putative 30S ribosomal protein S4 [Rhizobium leguminosarum bv. viciae 3841] Length = 205 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 157/206 (76%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VSVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|241204876|ref|YP_002975972.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858766|gb|ACS56433.1| ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 205 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 157/206 (76%), Positives = 177/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLEA LAERDVP+YI V+H MVATF Sbjct: 121 VSVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLEAVSLAERDVPDYIEVDHSKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|86357927|ref|YP_469819.1| 30S ribosomal protein S4 [Rhizobium etli CFN 42] gi|123511793|sp|Q2K7U4|RS4_RHIEC RecName: Full=30S ribosomal protein S4 gi|86282029|gb|ABC91092.1| 30S ribosomal protein S4 [Rhizobium etli CFN 42] Length = 205 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/206 (75%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EA R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEAARRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL +VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVTVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|218462357|ref|ZP_03502448.1| 30S ribosomal protein S4 [Rhizobium etli Kim 5] Length = 205 Score = 327 bits (837), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 155/206 (75%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EA R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEASRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL +VLEA LAERDVP+YI V+H+ MVAT+ Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVTVLEAVSLAERDVPDYIEVDHNKMVATYG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|325293260|ref|YP_004279124.1| 30S ribosomal protein S4 [Agrobacterium sp. H13-3] gi|325061113|gb|ADY64804.1| 30S ribosomal protein S4 [Agrobacterium sp. H13-3] Length = 205 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG++ EK+FR+ + EA+R +GDTS NLI LESRLD IVYRAKFVPT+FA+RQF+NH H Sbjct: 61 YYGELREKQFRATYDEANRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV+QKSKQL +VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VTVNGVRVNIGSYRCKPGDVIEVRQKSKQLVTVLEAVQLAERDVPDYIEVDHNKMVATYA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVPYPV+M+P+LVVEFYSR Sbjct: 181 RIP-ALSDVPYPVVMEPHLVVEFYSR 205 >gi|222086151|ref|YP_002544683.1| ribosomal protein S4 [Agrobacterium radiobacter K84] gi|254764561|sp|B9JFR5|RS4_AGRRK RecName: Full=30S ribosomal protein S4 gi|221723599|gb|ACM26755.1| ribosomal protein S4 [Agrobacterium radiobacter K84] Length = 205 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 154/206 (74%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+ F EA+R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRATFDEANRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLE+ LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLESVSLAERDVPDYIEVDHNKMVATFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V+M+P LVVEFYSR Sbjct: 181 RVP-TLADVPYAVVMEPQLVVEFYSR 205 >gi|319784054|ref|YP_004143530.1| ribosomal protein S4 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169942|gb|ADV13480.1| ribosomal protein S4 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 205 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 176/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD+SEK+FR +++EADR +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVSEKQFRKVYEEADRRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCK GDV+E+++KSKQL VLEA LAERDVP+YI +H+ MVATF Sbjct: 121 VNVNGKRVNIGSYRCKPGDVVEIREKSKQLVIVLEAVGLAERDVPDYIEADHNKMVATFS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+PNLVVEFYSR Sbjct: 181 RIP-GLADVPFAVQMEPNLVVEFYSR 205 >gi|13470363|ref|NP_101930.1| 30S ribosomal protein S4 [Mesorhizobium loti MAFF303099] gi|26399462|sp|Q98NP5|RS4_RHILO RecName: Full=30S ribosomal protein S4 gi|14021103|dbj|BAB47716.1| 30S ribosomal protein S4 [Mesorhizobium loti MAFF303099] Length = 205 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/206 (74%), Positives = 176/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD+SEK+FR +++EADR +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVSEKQFRKVYEEADRRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCK GDVIEV++KSKQL VLE+ LAERDVP+YI +H+ MVATF Sbjct: 121 VNVNGKRVNIGSYRCKPGDVIEVREKSKQLVIVLESVGLAERDVPDYIEADHNKMVATFS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+PNLVVEFYSR Sbjct: 181 RIP-GLADVPFAVQMEPNLVVEFYSR 205 >gi|260460839|ref|ZP_05809089.1| ribosomal protein S4 [Mesorhizobium opportunistum WSM2075] gi|259033416|gb|EEW34677.1| ribosomal protein S4 [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 176/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD+SEK+FR +++EADR +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVSEKQFRKVYEEADRRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCK GDV+EV++KSKQL VLE+ LAERDVP+YI +H+ MVATF Sbjct: 121 VNVNGKRVNIGSYRCKPGDVVEVREKSKQLVIVLESVGLAERDVPDYIEADHNKMVATFS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+PNLVVEFYSR Sbjct: 181 RIP-GLADVPFAVQMEPNLVVEFYSR 205 >gi|319405659|emb|CBI79282.1| 30S ribosomal protein S4 [Bartonella sp. AR 15-3] Length = 205 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLEA QLAERDVPEYI+V+H+ M+ATF+ Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLEAVQLAERDVPEYINVDHNKMIATFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVHMEPNLVVEFYSR 205 >gi|146278250|ref|YP_001168409.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides ATCC 17025] gi|172046018|sp|A4WUP0|RS4_RHOS5 RecName: Full=30S ribosomal protein S4 gi|145556491|gb|ABP71104.1| SSU ribosomal protein S4P [Rhodobacter sphaeroides ATCC 17025] Length = 206 Score = 320 bits (821), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 177/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT L+ LE RLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIYAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCKEGDVI+V+++S+QLA VLEA+QLAERDVP+YI V++ M ATFV Sbjct: 121 VTVNGQRVNIGSYRCKEGDVIQVRERSRQLAIVLEATQLAERDVPDYIEVDYSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P SL DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-SLGDVPYPVVMEPNLVVEFYAK 205 >gi|77462835|ref|YP_352339.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides 2.4.1] gi|126461727|ref|YP_001042841.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides ATCC 17029] gi|221638705|ref|YP_002524967.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides KD131] gi|90101713|sp|Q3J446|RS4_RHOS4 RecName: Full=30S ribosomal protein S4 gi|152112256|sp|A3PIA3|RS4_RHOS1 RecName: Full=30S ribosomal protein S4 gi|254764608|sp|B9KPH3|RS4_RHOSK RecName: Full=30S ribosomal protein S4 gi|77387253|gb|ABA78438.1| SSU ribosomal protein S4P [Rhodobacter sphaeroides 2.4.1] gi|126103391|gb|ABN76069.1| SSU ribosomal protein S4P [Rhodobacter sphaeroides ATCC 17029] gi|221159486|gb|ACM00466.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides KD131] Length = 206 Score = 320 bits (820), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 150/206 (72%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT L+ LE RLD IVYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIFAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCKEGDVI+V++KS+QLA VLEA+QLAERDVP+YI V++ M ATFV Sbjct: 121 VTVNGQRVNIGSYRCKEGDVIQVREKSRQLALVLEATQLAERDVPDYIEVDYSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-GLGDVPYPVQMEPNLVVEFYAK 205 >gi|163759587|ref|ZP_02166672.1| 30S ribosomal protein S4 [Hoeflea phototrophica DFL-43] gi|162283184|gb|EDQ33470.1| 30S ribosomal protein S4 [Hoeflea phototrophica DFL-43] Length = 205 Score = 320 bits (820), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 154/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDISEK+FR I+ EA+R +GDT NLI LESRLD IVYRAKFV TIFAARQFVNH H Sbjct: 61 YYGDISEKQFRKIYDEANRMKGDTPENLIGLLESRLDAIVYRAKFVATIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NIGSYRCK GDVIEVK+KSKQL VLE+ LAERDVPEY+ +H+ MVAT+ Sbjct: 121 VKVNGVRTNIGSYRCKPGDVIEVKEKSKQLTLVLESVGLAERDVPEYVEADHNKMVATYT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-NLSDVPYPVQMEPNLVVEFYSR 205 >gi|319898918|ref|YP_004159011.1| 30S ribosomal protein S4 [Bartonella clarridgeiae 73] gi|319402882|emb|CBI76433.1| 30S ribosomal protein S4 [Bartonella clarridgeiae 73] Length = 205 Score = 320 bits (819), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 154/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRESTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDTS NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTSENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI V+H+ M ATF+ Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESIQLAERDVPEYIDVDHNKMKATFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFTDVPYAVHMEPNLVVEFYSR 205 >gi|84686195|ref|ZP_01014090.1| 30S ribosomal protein S4 [Maritimibacter alkaliphilus HTCC2654] gi|84665722|gb|EAQ12197.1| 30S ribosomal protein S4 [Rhodobacterales bacterium HTCC2654] Length = 206 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 151/206 (73%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDMTEKQFRRIFAEAERLKGDTGENLIGLLERRLDAVVYRAKFVPTIFAARQFVNHAH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V+VNG+ VNI SYR KEGDVIEV++KSKQLA VLEASQL ERDVP+Y+ V+H M ATFV Sbjct: 121 VMVNGQRVNIPSYRVKEGDVIEVREKSKQLAIVLEASQLPERDVPDYLEVDHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+EFY++ Sbjct: 181 RTP-GLSDVPYPVMMEPNLVIEFYAQ 205 >gi|254466555|ref|ZP_05079966.1| ribosomal protein S4 [Rhodobacterales bacterium Y4I] gi|206687463|gb|EDZ47945.1| ribosomal protein S4 [Rhodobacterales bacterium Y4I] Length = 206 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV+ KSKQ+ +VLEA QLAERDVP+YI +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVRDKSKQMVAVLEAVQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPVIM+PNLVVEFY++ Sbjct: 181 RTP-ALGDVPYPVIMEPNLVVEFYAK 205 >gi|62289777|ref|YP_221570.1| 30S ribosomal protein S4 [Brucella abortus bv. 1 str. 9-941] gi|82699705|ref|YP_414279.1| 30S ribosomal protein S4 [Brucella melitensis biovar Abortus 2308] gi|189024020|ref|YP_001934788.1| Ribosomal protein S4 [Brucella abortus S19] gi|237815263|ref|ZP_04594261.1| ribosomal protein S4 [Brucella abortus str. 2308 A] gi|254689084|ref|ZP_05152338.1| 30S ribosomal protein S4 [Brucella abortus bv. 6 str. 870] gi|254697217|ref|ZP_05159045.1| 30S ribosomal protein S4 [Brucella abortus bv. 2 str. 86/8/59] gi|254730116|ref|ZP_05188694.1| 30S ribosomal protein S4 [Brucella abortus bv. 4 str. 292] gi|256257333|ref|ZP_05462869.1| 30S ribosomal protein S4 [Brucella abortus bv. 9 str. C68] gi|260545474|ref|ZP_05821215.1| ribosomal protein S4 [Brucella abortus NCTC 8038] gi|260754581|ref|ZP_05866929.1| SSU ribosomal protein S4P [Brucella abortus bv. 6 str. 870] gi|260757804|ref|ZP_05870152.1| SSU ribosomal protein S4P [Brucella abortus bv. 4 str. 292] gi|260761627|ref|ZP_05873970.1| SSU ribosomal protein S4P [Brucella abortus bv. 2 str. 86/8/59] gi|260883608|ref|ZP_05895222.1| 30S ribosomal protein S4 [Brucella abortus bv. 9 str. C68] gi|297248181|ref|ZP_06931899.1| 30S ribosomal protein S4 [Brucella abortus bv. 5 str. B3196] gi|75505300|sp|Q57DS5|RS4_BRUAB RecName: Full=30S ribosomal protein S4 gi|90101677|sp|Q2YNH2|RS4_BRUA2 RecName: Full=30S ribosomal protein S4 gi|226697812|sp|B2S567|RS4_BRUA1 RecName: Full=30S ribosomal protein S4 gi|62195909|gb|AAX74209.1| RpsD, ribosomal protein S4 [Brucella abortus bv. 1 str. 9-941] gi|82615806|emb|CAJ10807.1| Ribosomal protein S4:RNA-binding S4:Ribosomal protein S4, bacterial and organelle form [Brucella melitensis biovar Abortus 2308] gi|189019592|gb|ACD72314.1| Ribosomal protein S4 [Brucella abortus S19] gi|237790100|gb|EEP64310.1| ribosomal protein S4 [Brucella abortus str. 2308 A] gi|260096881|gb|EEW80756.1| ribosomal protein S4 [Brucella abortus NCTC 8038] gi|260668122|gb|EEX55062.1| SSU ribosomal protein S4P [Brucella abortus bv. 4 str. 292] gi|260672059|gb|EEX58880.1| SSU ribosomal protein S4P [Brucella abortus bv. 2 str. 86/8/59] gi|260674689|gb|EEX61510.1| SSU ribosomal protein S4P [Brucella abortus bv. 6 str. 870] gi|260873136|gb|EEX80205.1| 30S ribosomal protein S4 [Brucella abortus bv. 9 str. C68] gi|297175350|gb|EFH34697.1| 30S ribosomal protein S4 [Brucella abortus bv. 5 str. B3196] Length = 205 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKHKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|254475661|ref|ZP_05089047.1| ribosomal protein S4 [Ruegeria sp. R11] gi|214029904|gb|EEB70739.1| ribosomal protein S4 [Ruegeria sp. R11] Length = 206 Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+ ++LEA QLAERDVP+YI +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQMTALLEAVQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLADVPYPVVMEPNLVVEFYAK 205 >gi|90420933|ref|ZP_01228838.1| 30S ribosomal protein S4 [Aurantimonas manganoxydans SI85-9A1] gi|90334908|gb|EAS48680.1| 30S ribosomal protein S4 [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRASAKYKIDRRMGENIWGRPKSPVNRRQYGPGQHGQRRKGKVSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+SEK+FR I++EA R +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDVSEKQFRKIYEEAARRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI SY CK GDVIEV+QKSKQL +LE+ QLAERDVPEYI V+H MVAT+ Sbjct: 121 VNVNGVRTNIQSYVCKPGDVIEVRQKSKQLTIILESVQLAERDVPEYIEVDHQKMVATYQ 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-GLHDVPYPVQMEPNLVVEFYSR 205 >gi|319407231|emb|CBI80870.1| 30S ribosomal protein S4 [Bartonella sp. 1-1C] Length = 205 Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 152/206 (73%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI V+H+ M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPEYIDVDHNKMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVHMEPNLVVEFYSR 205 >gi|260432821|ref|ZP_05786792.1| ribosomal protein S4 [Silicibacter lacuscaerulensis ITI-1157] gi|260416649|gb|EEX09908.1| ribosomal protein S4 [Silicibacter lacuscaerulensis ITI-1157] Length = 206 Score = 316 bits (810), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 150/206 (72%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ KSKQLA VLEA LAERDVP+Y+ V+H M ATFV Sbjct: 121 VKVNGKRVNIPSYRVKEGDVIEVRDKSKQLAVVLEAVALAERDVPDYLDVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P SL DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-SLGDVPYPVMMEPNLVVEFYAK 205 >gi|99081947|ref|YP_614101.1| 30S ribosomal protein S4 [Ruegeria sp. TM1040] gi|122984198|sp|Q1GES7|RS4_SILST RecName: Full=30S ribosomal protein S4 gi|99038227|gb|ABF64839.1| SSU ribosomal protein S4P [Ruegeria sp. TM1040] Length = 206 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ +VLEA QLAERDVP+YI V+H + ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQNVAVLEAVQLAERDVPDYIEVDHSKLTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLADVPYPVVMEPNLVVEFYAK 205 >gi|17987416|ref|NP_540050.1| 30S ribosomal protein S4 [Brucella melitensis bv. 1 str. 16M] gi|148560413|ref|YP_001258806.1| 30S ribosomal protein S4 [Brucella ovis ATCC 25840] gi|161618794|ref|YP_001592681.1| 30S ribosomal protein S4 [Brucella canis ATCC 23365] gi|163843102|ref|YP_001627506.1| 30S ribosomal protein S4 [Brucella suis ATCC 23445] gi|225627323|ref|ZP_03785360.1| ribosomal protein S4 [Brucella ceti str. Cudo] gi|225852343|ref|YP_002732576.1| 30S ribosomal protein S4 [Brucella melitensis ATCC 23457] gi|254693567|ref|ZP_05155395.1| 30S ribosomal protein S4 [Brucella abortus bv. 3 str. Tulya] gi|254701596|ref|ZP_05163424.1| 30S ribosomal protein S4 [Brucella suis bv. 5 str. 513] gi|254704143|ref|ZP_05165971.1| 30S ribosomal protein S4 [Brucella suis bv. 3 str. 686] gi|254708561|ref|ZP_05170389.1| 30S ribosomal protein S4 [Brucella pinnipedialis M163/99/10] gi|254709936|ref|ZP_05171747.1| 30S ribosomal protein S4 [Brucella pinnipedialis B2/94] gi|254713936|ref|ZP_05175747.1| 30S ribosomal protein S4 [Brucella ceti M644/93/1] gi|254717006|ref|ZP_05178817.1| 30S ribosomal protein S4 [Brucella ceti M13/05/1] gi|256031429|ref|ZP_05445043.1| 30S ribosomal protein S4 [Brucella pinnipedialis M292/94/1] gi|256159551|ref|ZP_05457318.1| 30S ribosomal protein S4 [Brucella ceti M490/95/1] gi|256254837|ref|ZP_05460373.1| 30S ribosomal protein S4 [Brucella ceti B1/94] gi|256264157|ref|ZP_05466689.1| 30S ribosomal protein S4 [Brucella melitensis bv. 2 str. 63/9] gi|260168563|ref|ZP_05755374.1| 30S ribosomal protein S4 [Brucella sp. F5/99] gi|260563860|ref|ZP_05834346.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. 16M] gi|260566609|ref|ZP_05837079.1| SSU ribosomal protein S4P [Brucella suis bv. 4 str. 40] gi|261213831|ref|ZP_05928112.1| SSU ribosomal protein S4P [Brucella abortus bv. 3 str. Tulya] gi|261218812|ref|ZP_05933093.1| SSU ribosomal protein S4P [Brucella ceti M13/05/1] gi|261222017|ref|ZP_05936298.1| SSU ribosomal protein S4P [Brucella ceti B1/94] gi|261316061|ref|ZP_05955258.1| SSU ribosomal protein S4P [Brucella pinnipedialis M163/99/10] gi|261317482|ref|ZP_05956679.1| SSU ribosomal protein S4P [Brucella pinnipedialis B2/94] gi|261321689|ref|ZP_05960886.1| SSU ribosomal protein S4P [Brucella ceti M644/93/1] gi|261752148|ref|ZP_05995857.1| SSU ribosomal protein S4P [Brucella suis bv. 5 str. 513] gi|261754809|ref|ZP_05998518.1| SSU ribosomal protein S4P [Brucella suis bv. 3 str. 686] gi|261758035|ref|ZP_06001744.1| SSU ribosomal protein S4P [Brucella sp. F5/99] gi|265988517|ref|ZP_06101074.1| SSU ribosomal protein S4P [Brucella pinnipedialis M292/94/1] gi|265997981|ref|ZP_06110538.1| SSU ribosomal protein S4P [Brucella ceti M490/95/1] gi|306841935|ref|ZP_07474613.1| ribosomal protein S4 [Brucella sp. BO2] gi|306843765|ref|ZP_07476364.1| ribosomal protein S4 [Brucella sp. BO1] gi|26399431|sp|Q8YGM5|RS4_BRUME RecName: Full=30S ribosomal protein S4 gi|172048262|sp|A5VQ09|RS4_BRUO2 RecName: Full=30S ribosomal protein S4 gi|189045365|sp|A9MAK7|RS4_BRUC2 RecName: Full=30S ribosomal protein S4 gi|189045366|sp|B0CLF6|RS4_BRUSI RecName: Full=30S ribosomal protein S4 gi|254764573|sp|C0RIG4|RS4_BRUMB RecName: Full=30S ribosomal protein S4 gi|17983107|gb|AAL52314.1| ssu ribosomal protein s4p [Brucella melitensis bv. 1 str. 16M] gi|148371670|gb|ABQ61649.1| ribosomal protein S4 [Brucella ovis ATCC 25840] gi|161335605|gb|ABX61910.1| ribosomal protein S4 [Brucella canis ATCC 23365] gi|163673825|gb|ABY37936.1| ribosomal protein S4 [Brucella suis ATCC 23445] gi|225617328|gb|EEH14373.1| ribosomal protein S4 [Brucella ceti str. Cudo] gi|225640708|gb|ACO00622.1| ribosomal protein S4 [Brucella melitensis ATCC 23457] gi|260153876|gb|EEW88968.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. 16M] gi|260156127|gb|EEW91207.1| SSU ribosomal protein S4P [Brucella suis bv. 4 str. 40] gi|260915438|gb|EEX82299.1| SSU ribosomal protein S4P [Brucella abortus bv. 3 str. Tulya] gi|260920601|gb|EEX87254.1| SSU ribosomal protein S4P [Brucella ceti B1/94] gi|260923901|gb|EEX90469.1| SSU ribosomal protein S4P [Brucella ceti M13/05/1] gi|261294379|gb|EEX97875.1| SSU ribosomal protein S4P [Brucella ceti M644/93/1] gi|261296705|gb|EEY00202.1| SSU ribosomal protein S4P [Brucella pinnipedialis B2/94] gi|261305087|gb|EEY08584.1| SSU ribosomal protein S4P [Brucella pinnipedialis M163/99/10] gi|261738019|gb|EEY26015.1| SSU ribosomal protein S4P [Brucella sp. F5/99] gi|261741901|gb|EEY29827.1| SSU ribosomal protein S4P [Brucella suis bv. 5 str. 513] gi|261744562|gb|EEY32488.1| SSU ribosomal protein S4P [Brucella suis bv. 3 str. 686] gi|262552449|gb|EEZ08439.1| SSU ribosomal protein S4P [Brucella ceti M490/95/1] gi|263094376|gb|EEZ18221.1| 30S ribosomal protein S4 [Brucella melitensis bv. 2 str. 63/9] gi|264660714|gb|EEZ30975.1| SSU ribosomal protein S4P [Brucella pinnipedialis M292/94/1] gi|306275956|gb|EFM57669.1| ribosomal protein S4 [Brucella sp. BO1] gi|306287968|gb|EFM59376.1| ribosomal protein S4 [Brucella sp. BO2] gi|326408851|gb|ADZ65916.1| 30S ribosomal protein S4 [Brucella melitensis M28] gi|326538567|gb|ADZ86782.1| ribosomal protein S4 [Brucella melitensis M5-90] Length = 205 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|254459623|ref|ZP_05073039.1| ribosomal protein S4 [Rhodobacterales bacterium HTCC2083] gi|206676212|gb|EDZ40699.1| ribosomal protein S4 [Rhodobacteraceae bacterium HTCC2083] Length = 206 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKAKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ IFKEADR +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFKKIFKEADRVKGDTGENLIGLLERRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDV+EV+ +SKQ+A++LEA QL ERDVP+Y+ V+H + ATF Sbjct: 121 VRVNGKKVNIASYRVKEGDVVEVRDRSKQMAAILEAVQLPERDVPDYMDVDHSKLTATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+E+Y++ Sbjct: 181 RTP-GLSDVPYPVLMEPNLVIEYYAQ 205 >gi|254718936|ref|ZP_05180747.1| 30S ribosomal protein S4 [Brucella sp. 83/13] gi|265983924|ref|ZP_06096659.1| SSU ribosomal protein S4P [Brucella sp. 83/13] gi|306838833|ref|ZP_07471664.1| ribosomal protein S4 [Brucella sp. NF 2653] gi|264662516|gb|EEZ32777.1| SSU ribosomal protein S4P [Brucella sp. 83/13] gi|306406117|gb|EFM62365.1| ribosomal protein S4 [Brucella sp. NF 2653] Length = 205 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIEVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|255261708|ref|ZP_05341050.1| ribosomal protein S4 [Thalassiobium sp. R2A62] gi|255104043|gb|EET46717.1| ribosomal protein S4 [Thalassiobium sp. R2A62] Length = 206 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQLA VLEA QLAERDVP+Y+ +H M ATFV Sbjct: 121 VKVNGKKVNIPSYRVKEGDVIEVRDRSKQLAVVLEAVQLAERDVPDYVDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-GLGDVPYPVMMEPNLVVEFYAK 205 >gi|319408557|emb|CBI82210.1| 30S ribosomal protein S4 [Bartonella schoenbuchensis R1] Length = 205 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 153/206 (74%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRESTKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR I++EA R RGDTS NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKIYEEAVRRRGDTSENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI +H M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESIQLAERDVPEYIEADHSKMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFSDVPYAVHMEPNLVVEFYSR 205 >gi|319404221|emb|CBI77814.1| 30S ribosomal protein S4 [Bartonella rochalimae ATCC BAA-1498] Length = 205 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 150/206 (72%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD +VYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAVVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERD+PEYI V+H+ M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESIQLAERDIPEYIDVDHNKMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVHMEPNLVVEFYSR 205 >gi|149913680|ref|ZP_01902213.1| 30S ribosomal protein S4 [Roseobacter sp. AzwK-3b] gi|149812800|gb|EDM72629.1| 30S ribosomal protein S4 [Roseobacter sp. AzwK-3b] Length = 206 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF++A+R RGDT L+ LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFRDAERQRGDTGELLVGLLERRLDAVVYRAKFVPTMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR +EGDVIEV+ +SKQLA +LEA QLAERDVP+Y+ V+H MVATFV Sbjct: 121 VRVNGRKVNIPSYRVQEGDVIEVRNRSKQLAVLLEAVQLAERDVPDYLEVDHSKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPVIM+PNLV+EFY++ Sbjct: 181 RTP-GLADVPYPVIMEPNLVIEFYAQ 205 >gi|259416699|ref|ZP_05740619.1| ribosomal protein S4 [Silicibacter sp. TrichCH4B] gi|259348138|gb|EEW59915.1| ribosomal protein S4 [Silicibacter sp. TrichCH4B] Length = 206 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ +VLEA QLAERDVP+YI V+H + ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQNVAVLEAVQLAERDVPDYIEVDHSKLTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLADVPYPVMMEPNLVVEFYAK 205 >gi|126725806|ref|ZP_01741648.1| 30S ribosomal protein S4 [Rhodobacterales bacterium HTCC2150] gi|126705010|gb|EBA04101.1| 30S ribosomal protein S4 [Rhodobacterales bacterium HTCC2150] Length = 206 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFSEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR K+GDVIEV+ +SKQ A+V+EASQLAERDVP+Y+ V+H MVATF Sbjct: 121 VKVNGKKVNIPSYRVKDGDVIEVRDRSKQNATVIEASQLAERDVPDYVDVDHSKMVATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P S DVPYPVIM+PNLVVEFY++ Sbjct: 181 RTP-SFSDVPYPVIMEPNLVVEFYAK 205 >gi|23501717|ref|NP_697844.1| 30S ribosomal protein S4 [Brucella suis 1330] gi|26399355|sp|P59128|RS4_BRUSU RecName: Full=30S ribosomal protein S4 gi|23347642|gb|AAN29759.1| ribosomal protein S4 [Brucella suis 1330] Length = 205 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVPGLL-DVPYAVQMEPNLVVEFYSR 205 >gi|294852185|ref|ZP_06792858.1| 30S ribosomal protein S4 [Brucella sp. NVSL 07-0026] gi|294820774|gb|EFG37773.1| 30S ribosomal protein S4 [Brucella sp. NVSL 07-0026] Length = 205 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYVVQMEPNLVVEFYSR 205 >gi|56698013|ref|YP_168384.1| 30S ribosomal protein S4 [Ruegeria pomeroyi DSS-3] gi|62287189|sp|Q5LNM2|RS4_SILPO RecName: Full=30S ribosomal protein S4 gi|56679750|gb|AAV96416.1| ribosomal protein S4 [Ruegeria pomeroyi DSS-3] Length = 206 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV+++SKQLASVLEA LAERDVP+Y+ V+H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVRERSKQLASVLEAVSLAERDVPDYLEVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPY V+M+PNLVVE+Y++ Sbjct: 181 RTP-HLGDVPYAVVMEPNLVVEYYAK 205 >gi|163737823|ref|ZP_02145240.1| RNA-binding S4 [Phaeobacter gallaeciensis BS107] gi|163742871|ref|ZP_02150255.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis 2.10] gi|161383835|gb|EDQ08220.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis 2.10] gi|161389349|gb|EDQ13701.1| RNA-binding S4 [Phaeobacter gallaeciensis BS107] Length = 206 Score = 315 bits (806), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYSEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+ ++LEA QLAERDVP+Y+ +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQMTALLEAVQLAERDVPDYVEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLSDVPYPVVMEPNLVVEFYAK 205 >gi|84514475|ref|ZP_01001839.1| 30S ribosomal protein S4 [Loktanella vestfoldensis SKA53] gi|84511526|gb|EAQ07979.1| 30S ribosomal protein S4 [Loktanella vestfoldensis SKA53] Length = 206 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+QKSKQL VL A+QLAERDVP+Y+ V+H+ M+ATFV Sbjct: 121 VTVNGQRVNIPSYRVKEGDVIEVRQKSKQLEIVLVAAQLAERDVPDYMEVDHNKMIATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-TLGDVPYPVTMEPNLVVEFYAK 205 >gi|260429241|ref|ZP_05783218.1| ribosomal protein S4 [Citreicella sp. SE45] gi|260419864|gb|EEX13117.1| ribosomal protein S4 [Citreicella sp. SE45] Length = 206 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFGEAERIKGDTGELLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+A VLEA+QL ERDVP+Y+ V+H M ATFV Sbjct: 121 VLVNGQRVNIPSYRVKEGDVIEVREKSKQMALVLEAAQLPERDVPDYLEVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPYPV M+PNLV+EFY++ Sbjct: 181 RMP-GLADVPYPVQMEPNLVIEFYAQ 205 >gi|159045488|ref|YP_001534282.1| 30S ribosomal protein S4 [Dinoroseobacter shibae DFL 12] gi|189045378|sp|A8LK98|RS4_DINSH RecName: Full=30S ribosomal protein S4 gi|157913248|gb|ABV94681.1| 30S ribosomal protein S4 [Dinoroseobacter shibae DFL 12] Length = 206 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKQKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG VNI SYR KEGDVIEV++KS+Q+A++LEA+QL ERDVP+Y+ +H+ M ATFV Sbjct: 121 VLVNGERVNIPSYRVKEGDVIEVREKSRQMAALLEATQLPERDVPDYVDADHNKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+E+Y++ Sbjct: 181 RTP-GLADVPYPVMMEPNLVIEYYAQ 205 >gi|256369260|ref|YP_003106768.1| 30S ribosomal protein S4 [Brucella microti CCM 4915] gi|255999420|gb|ACU47819.1| 30S ribosomal protein S4 [Brucella microti CCM 4915] Length = 205 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 151/206 (73%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MV T+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVTTYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|153009724|ref|YP_001370939.1| 30S ribosomal protein S4 [Ochrobactrum anthropi ATCC 49188] gi|171704561|sp|A6X1K6|RS4_OCHA4 RecName: Full=30S ribosomal protein S4 gi|151561612|gb|ABS15110.1| RNA-binding S4 domain protein [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VN+ SYR K GDV+EV++KSKQL VLEA QLAERDVP+YI V+H+ +VAT+ Sbjct: 121 VNVNGRRVNVQSYRLKTGDVVEVREKSKQLVIVLEAVQLAERDVPDYIEVDHNKLVATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-TLTDVPYAVQMEPNLVVEFYSR 205 >gi|256044506|ref|ZP_05447410.1| 30S ribosomal protein S4 [Brucella melitensis bv. 1 str. Rev.1] gi|265990930|ref|ZP_06103487.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. Rev.1] gi|263001714|gb|EEZ14289.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. Rev.1] Length = 205 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 151/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVV+FYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVKFYSR 205 >gi|254470314|ref|ZP_05083718.1| ribosomal protein S4 [Pseudovibrio sp. JE062] gi|211960625|gb|EEA95821.1| ribosomal protein S4 [Pseudovibrio sp. JE062] Length = 205 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 150/206 (72%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+KIDRR+GEN+WGRPKSP N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRQSAKYKIDRRMGENIWGRPKSPANRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKVYDEASRQRGDTSENLIGLLECRLDAIVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNIGSY CK GDVIEV++KSKQLA VLEA Q AERD P+YI V+ + +VAT+ Sbjct: 121 VNVNGRRVNIGSYMCKPGDVIEVREKSKQLAIVLEAVQSAERDTPDYIDVDTNKLVATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPYPV M+PNLVVEFYSR Sbjct: 181 RIP-AFGDVPYPVQMEPNLVVEFYSR 205 >gi|49474224|ref|YP_032266.1| 30S ribosomal protein S4 [Bartonella quintana str. Toulouse] gi|61215536|sp|Q6FZU4|RS4_BARQU RecName: Full=30S ribosomal protein S4 gi|49239728|emb|CAF26110.1| 30s ribosomal protein s4 [Bartonella quintana str. Toulouse] Length = 205 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD ++YRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAVIYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI +H+ M ATFV Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPEYIEADHNQMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVQMEPNLVVEFYSR 205 >gi|114704639|ref|ZP_01437547.1| 30S ribosomal protein S4 [Fulvimarina pelagi HTCC2506] gi|114539424|gb|EAU42544.1| 30S ribosomal protein S4 [Fulvimarina pelagi HTCC2506] Length = 205 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRRQYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR +++EA R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDVREKQFRKVYEEAARRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG N+ SYRCK GDVIEV++KSKQL SVLE+ LAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGVRTNVQSYRCKPGDVIEVREKSKQLTSVLESVGLAERDVPDYIEVDHNKMVATYQ 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-ALHDVPYPVQMEPNLVVEFYSR 205 >gi|256060939|ref|ZP_05451097.1| 30S ribosomal protein S4 [Brucella neotomae 5K33] gi|261324939|ref|ZP_05964136.1| 30S ribosomal protein S4 [Brucella neotomae 5K33] gi|261300919|gb|EEY04416.1| 30S ribosomal protein S4 [Brucella neotomae 5K33] Length = 205 Score = 313 bits (803), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 151/206 (73%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAVVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V +PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQTEPNLVVEFYSR 205 >gi|126728329|ref|ZP_01744145.1| 30S ribosomal protein S4 [Sagittula stellata E-37] gi|126711294|gb|EBA10344.1| 30S ribosomal protein S4 [Sagittula stellata E-37] Length = 206 Score = 313 bits (802), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 143/206 (69%), Positives = 177/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTTAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKQKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF +A+R++GDT LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFSDAERAKGDTGELLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+A++LEA+QL ERDVP+YI V+H+ + A+FV Sbjct: 121 VLVNGQRVNIPSYRVKEGDVIEVREKSKQMAAILEATQLPERDVPDYIEVDHNKLTASFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+E+Y++ Sbjct: 181 RTP-GLSDVPYPVMMEPNLVIEYYAQ 205 >gi|83854847|ref|ZP_00948377.1| 30S ribosomal protein S4 [Sulfitobacter sp. NAS-14.1] gi|83941370|ref|ZP_00953832.1| 30S ribosomal protein S4 [Sulfitobacter sp. EE-36] gi|83842690|gb|EAP81857.1| 30S ribosomal protein S4 [Sulfitobacter sp. NAS-14.1] gi|83847190|gb|EAP85065.1| 30S ribosomal protein S4 [Sulfitobacter sp. EE-36] Length = 206 Score = 313 bits (802), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+ ++LEA+QLAERDVP+YI +H M ATFV Sbjct: 121 VKVNGKKVNIPSYRVKEGDVIEVRDRSKQMVALLEATQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-ALGDVPYPVMMEPNLVVEFYAK 205 >gi|239831713|ref|ZP_04680042.1| ribosomal protein S4 [Ochrobactrum intermedium LMG 3301] gi|239823980|gb|EEQ95548.1| ribosomal protein S4 [Ochrobactrum intermedium LMG 3301] Length = 263 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 59 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 118 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 119 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 178 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQL VLEA QLAERDVP+YI V+H+ +VAT+ Sbjct: 179 VNVNGRRVNIQSYRLKAGDVVEVREKSKQLVIVLEAVQLAERDVPDYIEVDHNKLVATYS 238 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V M+PNLVVEFYSR Sbjct: 239 RVP-TLTDVPYAVQMEPNLVVEFYSR 263 >gi|254486907|ref|ZP_05100112.1| ribosomal protein S4 [Roseobacter sp. GAI101] gi|214043776|gb|EEB84414.1| ribosomal protein S4 [Roseobacter sp. GAI101] Length = 206 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+A++LEA+QL ERDVP+Y+ V+H M ATFV Sbjct: 121 VKVNGKKVNIPSYRVKEGDVIEVRDRSKQMAALLEATQLPERDVPDYMEVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-ALGDVPYPVVMEPNLVVEFYAK 205 >gi|89070850|ref|ZP_01158095.1| 30S ribosomal protein S4 [Oceanicola granulosus HTCC2516] gi|89043588|gb|EAR49797.1| 30S ribosomal protein S4 [Oceanicola granulosus HTCC2516] Length = 206 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFSEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDV+ V++KS+Q+AS+LEA+QL ERDVP+Y+ V+H + AT+V Sbjct: 121 VTVNGKRVNIPSYRVKEGDVVAVREKSRQMASILEATQLPERDVPDYLDVDHSKLTATYV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPVIM+PNLV+E+Y++ Sbjct: 181 RAP-GLADVPYPVIMEPNLVIEYYAQ 205 >gi|110680562|ref|YP_683569.1| 30S ribosomal protein S4 [Roseobacter denitrificans OCh 114] gi|122972607|sp|Q163G0|RS4_ROSDO RecName: Full=30S ribosomal protein S4 gi|109456678|gb|ABG32883.1| ribosomal protein S4 [Roseobacter denitrificans OCh 114] Length = 206 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH+H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHKH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+ +++EA+QLAERDVP+YI +H M ATFV Sbjct: 121 VRVNGKIVNIPSYRVKEGDVIEVRDRSKQMVALIEATQLAERDVPDYIEADHSKMQATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-ALGDVPYPVMMEPNLVVEFYAK 205 >gi|84500119|ref|ZP_00998385.1| 30S ribosomal protein S4 [Oceanicola batsensis HTCC2597] gi|84392053|gb|EAQ04321.1| 30S ribosomal protein S4 [Oceanicola batsensis HTCC2597] Length = 206 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ I+ EA R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFKRIYSEAARVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KS+Q+A VLEA+QL ERDVP+Y+ +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSRQMALVLEAAQLPERDVPDYLDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+E+Y++ Sbjct: 181 RTP-GLSDVPYPVMMEPNLVIEYYAQ 205 >gi|114766790|ref|ZP_01445724.1| 30S ribosomal protein S4 [Pelagibaca bermudensis HTCC2601] gi|114540984|gb|EAU44042.1| 30S ribosomal protein S4 [Roseovarius sp. HTCC2601] Length = 206 Score = 311 bits (798), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGR KSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRAKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT +LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFGEAERLKGDTGEHLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQLA VLEA+QL ERDVP+Y+ V+H M A+FV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQLAVVLEAAQLPERDVPDYLEVDHSKMTASFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFY++ Sbjct: 181 RTP-GLADVPYPVQMEPNLVIEFYAQ 205 >gi|126739832|ref|ZP_01755523.1| 30S ribosomal protein S4 [Roseobacter sp. SK209-2-6] gi|126719064|gb|EBA15775.1| 30S ribosomal protein S4 [Roseobacter sp. SK209-2-6] Length = 206 Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA R GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDMTEKQFRRIYAEAVRVNGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVI V+ KSKQLA ++EA+QLAERDVP+YI +H M ATFV Sbjct: 121 VTVNGKRVNIPSYRVKEGDVIAVRDKSKQLAVLIEATQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-GLGDVPYPVVMEPNLVVEFYAK 205 >gi|163732311|ref|ZP_02139757.1| 30S ribosomal protein S4 [Roseobacter litoralis Och 149] gi|161394609|gb|EDQ18932.1| 30S ribosomal protein S4 [Roseobacter litoralis Och 149] Length = 206 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH+H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVSTVFAARQFVNHKH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+A+++EA+QLAERDVP+YI +H M A FV Sbjct: 121 VRVNGQIVNIPSYRVKEGDVIEVRDRSKQMAALIEATQLAERDVPDYIEADHSKMHAKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-ALGDVPYPVMMEPNLVVEFYAK 205 >gi|86136443|ref|ZP_01055022.1| ribosomal protein S4 [Roseobacter sp. MED193] gi|85827317|gb|EAQ47513.1| ribosomal protein S4 [Roseobacter sp. MED193] Length = 206 Score = 310 bits (795), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDITEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVI V+ KSKQLA +LEA L ERDVP+YI +H M ATFV Sbjct: 121 VTVNGKRVNIASYRVKEGDVIAVRDKSKQLAVLLEAVALPERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLADVPYPVVMEPNLVVEFYAK 205 >gi|163745685|ref|ZP_02153045.1| 30S ribosomal protein S4 [Oceanibulbus indolifex HEL-45] gi|161382503|gb|EDQ06912.1| 30S ribosomal protein S4 [Oceanibulbus indolifex HEL-45] Length = 206 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHK+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQLASVLEA QL ERDVP+Y+ +H + ATFV Sbjct: 121 VRVNGKKVNIPSYRVKEGDVIEVRDRSKQLASVLEAVQLPERDVPDYLETDHSKLTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-GLSDVPYPVVMEPNLVVEFYAK 205 >gi|89053445|ref|YP_508896.1| 30S ribosomal protein S4 [Jannaschia sp. CCS1] gi|122499375|sp|Q28TU1|RS4_JANSC RecName: Full=30S ribosomal protein S4 gi|88862994|gb|ABD53871.1| SSU ribosomal protein S4P [Jannaschia sp. CCS1] Length = 206 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R RGDT LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERLRGDTGEFLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVI V+ KSKQLA VLEA LAERDVP+Y+ +H M ATFV Sbjct: 121 VTVNGQKVNIPSYRVKEGDVIAVRDKSKQLAVVLEAVGLAERDVPDYVDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-GLSDVPYPVVMEPNLVVEFYAK 205 >gi|126733337|ref|ZP_01749084.1| 30S ribosomal protein S4 [Roseobacter sp. CCS2] gi|126716203|gb|EBA13067.1| 30S ribosomal protein S4 [Roseobacter sp. CCS2] Length = 206 Score = 310 bits (794), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+QKSKQL VL ASQL ERDVP+Y+ V+H+ M ATF Sbjct: 121 VTVNGKKVNIPSYRVKEGDVIEVRQKSKQLELVLVASQLPERDVPDYMDVDHNKMTATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-GLGDVPYPVTMEPNLVVEFYAK 205 >gi|49475604|ref|YP_033645.1| 30S ribosomal protein S4 [Bartonella henselae str. Houston-1] gi|61215542|sp|Q6G5E2|RS4_BARHE RecName: Full=30S ribosomal protein S4 gi|49238411|emb|CAF27638.1| 30S ribosomal protein s4 [Bartonella henselae str. Houston-1] Length = 205 Score = 310 bits (794), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD ++YRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAVIYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIE+++KSKQL VLE+ QL ERDVPEYI +H+ M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEIREKSKQLVLVLESVQLVERDVPEYIEADHNQMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVQMEPNLVVEFYSR 205 >gi|121602011|ref|YP_989114.1| 30S ribosomal protein S4 [Bartonella bacilliformis KC583] gi|152060935|sp|A1UT11|RS4_BARBK RecName: Full=30S ribosomal protein S4 gi|120614188|gb|ABM44789.1| ribosomal protein S4 [Bartonella bacilliformis KC583] Length = 205 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRRIGEN+WGRPKSPVN R YGPG HGQRRK K S +G+QL AKQK+K Sbjct: 1 MSKRESAKYKIDRRIGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLCAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR I++EA R RGDT NLI LESRLD IVYR+KFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKIYQEAVRRRGDTGENLIGLLESRLDAIVYRSKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIE++++SKQL VLEA+QL ERDVP+YI +H M ATFV Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEIRERSKQLLLVLEATQLNERDVPDYIEADHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFSDVPYAVQMEPNLVVEFYSR 205 >gi|254510000|ref|ZP_05122067.1| ribosomal protein S4 [Rhodobacteraceae bacterium KLH11] gi|221533711|gb|EEE36699.1| ribosomal protein S4 [Rhodobacteraceae bacterium KLH11] Length = 206 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA R GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAVRVNGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ KSKQLA VLEA LAERDVP+YI +H M ATFV Sbjct: 121 VKVNGKRVNIPSYRVKEGDVIEVRDKSKQLAVVLEAVALAERDVPDYIDADHSKMAATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLGDVPYPVVMEPNLVVEFYAK 205 >gi|328543189|ref|YP_004303298.1| 30S ribosomal protein S4 [Polymorphum gilvum SL003B-26A1] gi|326412935|gb|ADZ69998.1| 30S ribosomal protein S4 [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKHKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F+ ++ EA R +GDTS NLI LE RLD IVYRAKFVPT+FAARQFV+H H Sbjct: 61 YYGNISEKQFQKVYTEASRMKGDTSENLIGLLERRLDAIVYRAKFVPTVFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V IGSYRC+ GDVIEV+++SKQ+ VLEA+Q ERDVP+YI +H M ATF Sbjct: 121 VKVNGKRVTIGSYRCRPGDVIEVRERSKQMVLVLEAAQSGERDVPDYIDADHGKMTATFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP S +VPYPV M+PNLVVEFYSR Sbjct: 181 RIP-SFSEVPYPVQMEPNLVVEFYSR 205 >gi|240850639|ref|YP_002972039.1| 30S ribosomal protein S4 [Bartonella grahamii as4aup] gi|240267762|gb|ACS51350.1| 30S ribosomal protein S4 [Bartonella grahamii as4aup] Length = 205 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+F ++EA R RGDT NLI LESRLD +VYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFHKTYEEAARRRGDTGENLIGLLESRLDAVVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVP+YI +H M ATF Sbjct: 121 VSVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPDYIEADHKQMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVQMEPNLVVEFYSR 205 >gi|256113362|ref|ZP_05454220.1| 30S ribosomal protein S4 [Brucella melitensis bv. 3 str. Ether] gi|265994768|ref|ZP_06107325.1| SSU ribosomal protein S4P [Brucella melitensis bv. 3 str. Ether] gi|262765881|gb|EEZ11670.1| SSU ribosomal protein S4P [Brucella melitensis bv. 3 str. Ether] Length = 201 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 148/202 (73%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYK 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVE 202 R+P L DVPY V M+PNLVVE Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVE 201 >gi|85704146|ref|ZP_01035249.1| 30S ribosomal protein S4 [Roseovarius sp. 217] gi|85671466|gb|EAQ26324.1| 30S ribosomal protein S4 [Roseovarius sp. 217] Length = 206 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT LI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFAEAERIKGDTGETLIGLLERRLDAVVYRAKFVATMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYR KEGDVIEV+ +SKQ+A +LEA QLAERDVP+YI +H M ATFV Sbjct: 121 VTVNGNRVNIPSYRVKEGDVIEVRDRSKQIAVLLEAVQLAERDVPDYIDADHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPVIM+PNLV+EFY++ Sbjct: 181 RQP-GLSDVPYPVIMEPNLVIEFYAQ 205 >gi|163868316|ref|YP_001609525.1| 30S ribosomal protein S4 [Bartonella tribocorum CIP 105476] gi|189045364|sp|A9IU99|RS4_BART1 RecName: Full=30S ribosomal protein S4 gi|161017972|emb|CAK01530.1| 30S ribosomal protein S4 [Bartonella tribocorum CIP 105476] Length = 205 Score = 306 bits (785), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+F + EA R RGDT NLI LESRLD +VYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFHKTYVEAARRRGDTGENLIGLLESRLDAVVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVP+YI +H M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPDYIEADHKQMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY V M+PNLVVEFYSR Sbjct: 181 RIP-AFADVPYAVQMEPNLVVEFYSR 205 >gi|149202433|ref|ZP_01879406.1| 30S ribosomal protein S4 [Roseovarius sp. TM1035] gi|149144531|gb|EDM32562.1| 30S ribosomal protein S4 [Roseovarius sp. TM1035] Length = 206 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKAKISDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERLKGDTGENLIGLLERRLDAVVYRAKFVVTMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+ +LEA QLAERDVP+YI +H M ATFV Sbjct: 121 VTVNGQRVNIPSYRVKEGDVIEVRDRSKQMTVLLEAVQLAERDVPDYIEADHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+EFY++ Sbjct: 181 RQP-GLSDVPYPVMMEPNLVIEFYAQ 205 >gi|110633623|ref|YP_673831.1| 30S ribosomal protein S4 [Mesorhizobium sp. BNC1] gi|123353737|sp|Q11IV9|RS4_MESSB RecName: Full=30S ribosomal protein S4 gi|110284607|gb|ABG62666.1| SSU ribosomal protein S4P [Chelativorans sp. BNC1] Length = 205 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRQSAKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGQQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+SEK+FR I+ EA+R +G+T+ NLI LESRLD IV+RAKFVPT FAARQFVNH H Sbjct: 61 YYGDLSEKQFRRIYDEANRRKGETTENLIGLLESRLDAIVFRAKFVPTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYRCK GDVIEV++KSKQL VLE+ LAERDVP+YI V+H+ M A +V Sbjct: 121 VKVNGRRVNIPSYRCKPGDVIEVREKSKQLTVVLESVALAERDVPDYIEVDHNKMTAKYV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V M+PNLV+E+YSR Sbjct: 181 RMP-ALADVPYAVHMEPNLVIEYYSR 205 >gi|254451859|ref|ZP_05065296.1| ribosomal protein S4 [Octadecabacter antarcticus 238] gi|198266265|gb|EDY90535.1| ribosomal protein S4 [Octadecabacter antarcticus 238] Length = 206 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 142/206 (68%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGMQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIFTEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGD+IEV+ SKQ +VL+A LAERDVP+Y+ V+H M ATFV Sbjct: 121 VTVNGKKVNIPSYRVKEGDIIEVRDSSKQNVAVLDAIGLAERDVPDYMDVDHSKMSATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+E+Y++ Sbjct: 181 RTP-GLGDVPYPVMMEPNLVIEYYAQ 205 >gi|83949926|ref|ZP_00958659.1| 30S ribosomal protein S4 [Roseovarius nubinhibens ISM] gi|83837825|gb|EAP77121.1| 30S ribosomal protein S4 [Roseovarius nubinhibens ISM] Length = 206 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 143/206 (69%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R PG HG RRK+K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRRENAPGQHGARRKAKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF+EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFREAERVKGDTGENLIGLLERRLDAVVYRAKFVATMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+A +LEA+QLAERDVP+YI +H M ATFV Sbjct: 121 VKVNGQRVNIPSYRVKEGDVIEVRDRSKQIAVLLEATQLAERDVPDYIDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLV+EFY++ Sbjct: 181 RTP-GLSDVPYPVMMEPNLVIEFYAQ 205 >gi|294678498|ref|YP_003579113.1| 30S ribosomal protein S4 [Rhodobacter capsulatus SB 1003] gi|294477318|gb|ADE86706.1| 30S ribosomal protein S4 [Rhodobacter capsulatus SB 1003] Length = 206 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGR KSP+N R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRAKSPLNKRDYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD IVYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIYGEAERVKGDTGENLIGLLERRLDAIVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYR KEGDVI V+ +SKQLA VLEA+Q ERDVP+Y+ V+H M ATFV Sbjct: 121 VTVNGARVNIASYRVKEGDVIAVRDRSKQLAIVLEAAQSGERDVPDYLEVDHGKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-GLSDVPYPVHMEPNLVVEFYAK 205 >gi|118588602|ref|ZP_01546010.1| 30S ribosomal protein S4 [Stappia aggregata IAM 12614] gi|118438588|gb|EAV45221.1| 30S ribosomal protein S4 [Stappia aggregata IAM 12614] Length = 205 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGRPKSP N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKYKIDRRMGENIWGRPKSPANKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++ EA R +GDTS NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKVYAEASRMKGDTSENLIGLLERRLDAIVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ + GDVIEV++KSKQLA VLEA Q AERDVP+Y+ V+H+ M AT+ Sbjct: 121 VKVNGKRVNISSYQIRPGDVIEVREKSKQLALVLEAVQSAERDVPDYLDVDHNKMTATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-GFSDVPYPVQMEPNLVVEFYSR 205 >gi|154253024|ref|YP_001413848.1| 30S ribosomal protein S4 [Parvibaculum lavamentivorans DS-1] gi|171769617|sp|A7HWA8|RS4_PARL1 RecName: Full=30S ribosomal protein S4 gi|154156974|gb|ABS64191.1| RNA-binding S4 domain protein [Parvibaculum lavamentivorans DS-1] Length = 206 Score = 303 bits (777), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR+ SK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MTKRQESKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG+ISEK+FR I+KEA+R RGDTS LI LE RLD +VYRAKFV T FAARQFV H H Sbjct: 61 FYGNISEKQFRGIYKEANRLRGDTSEILIGLLERRLDAVVYRAKFVMTPFAARQFVGHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ VN+ SYR +EGDVIEV++KSKQLA VLEASQ AERD P+YI V+HD MVA FV Sbjct: 121 ILVNGKRVNVPSYRVREGDVIEVREKSKQLAIVLEASQSAERDTPDYIEVDHDKMVAKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + DVPY M+PNLV+EFYSR Sbjct: 181 RIP-AFSDVPYAAHMEPNLVIEFYSR 205 >gi|304391422|ref|ZP_07373364.1| ribosomal protein S4 [Ahrensia sp. R2A130] gi|303295651|gb|EFL90009.1| ribosomal protein S4 [Ahrensia sp. R2A130] Length = 205 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/206 (67%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR++SK+K+DRR+GEN+WGRPKSPVN R YGPG HGQ RK K S FG+QLRAKQK+K Sbjct: 1 MSKRQASKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQGRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR IF +A+ +GDT NLI LE RLDTI+YRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFRKIFDQANAQKGDTGENLIGLLERRLDTIIYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG NI SYRCK GDVIE+++KSKQLA VLE+ LAERDVPEY++ +H M + V Sbjct: 121 LLVNGVRTNIPSYRCKPGDVIEIREKSKQLAIVLESVGLAERDVPEYVTADHSKMTCSLV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + DVP+PV+M+PNL VEFYSR Sbjct: 181 TVP-AFGDVPFPVLMEPNLTVEFYSR 205 >gi|119387008|ref|YP_918063.1| 30S ribosomal protein S4 [Paracoccus denitrificans PD1222] gi|152112241|sp|A1BA23|RS4_PARDP RecName: Full=30S ribosomal protein S4 gi|119377603|gb|ABL72367.1| SSU ribosomal protein S4P [Paracoccus denitrificans PD1222] Length = 206 Score = 300 bits (769), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGR KSP+N R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRAKSPLNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD ++YRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVIYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDV+ ++++S+QLA VLE+ LAERDVP+Y+ V+H+ M ATFV Sbjct: 121 VEVNGKRVNIASYRVKEGDVVSIRERSRQLAIVLESVGLAERDVPDYLEVDHNKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPY V M+PNLVVEFY++ Sbjct: 181 RTP-ALGDVPYAVQMEPNLVVEFYAK 205 >gi|312112941|ref|YP_004010537.1| ribosomal protein S4 [Rhodomicrobium vannielii ATCC 17100] gi|311218070|gb|ADP69438.1| ribosomal protein S4 [Rhodomicrobium vannielii ATCC 17100] Length = 205 Score = 300 bits (768), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 141/206 (68%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GENLWGRPKSP+N R YGPG HGQRR+ K S FG QL+AKQK+K Sbjct: 1 MTKRASAKHKIDRRLGENLWGRPKSPLNKREYGPGQHGQRRRGKTSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+E++FR I+ EA R RGDTS NLI LE RLD +VYRAKFV T FAARQF++H H Sbjct: 61 YYGNITERQFRLIYAEATRLRGDTSENLIGLLERRLDAVVYRAKFVATPFAARQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SYRC+ GDVIEV++K+K LA VLEA+Q AERDVP+Y+ V+H + A Sbjct: 121 ISVNGRRVNIPSYRCRAGDVIEVREKAKPLAFVLEATQSAERDVPDYLEVDHGKLTARLS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVPYPV+M+PNLVVEFYSR Sbjct: 181 RIP-QLSDVPYPVVMEPNLVVEFYSR 205 >gi|254504798|ref|ZP_05116949.1| ribosomal protein S4 [Labrenzia alexandrii DFL-11] gi|222440869|gb|EEE47548.1| ribosomal protein S4 [Labrenzia alexandrii DFL-11] Length = 205 Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 141/206 (68%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++ EA R +GDTS NLI LE RLD ++YRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKVYAEASRLKGDTSENLIGLLERRLDAVIYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ + GDV+EV+++SKQLA VLEA Q AERDVP+Y+ +H M AT+ Sbjct: 121 VKVNGKRVNIPSYQLRPGDVVEVRERSKQLAIVLEAVQSAERDVPDYVDADHAKMTATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-AFSDVPYPVQMEPNLVVEFYSR 205 >gi|16126750|ref|NP_421314.1| 30S ribosomal protein S4 [Caulobacter crescentus CB15] gi|221235532|ref|YP_002517969.1| 30S ribosomal protein S4 [Caulobacter crescentus NA1000] gi|26399478|sp|Q9A5D9|RS4_CAUCR RecName: Full=30S ribosomal protein S4 gi|254764577|sp|B8H053|RS4_CAUCN RecName: Full=30S ribosomal protein S4 gi|13424068|gb|AAK24482.1| ribosomal protein S4 [Caulobacter crescentus CB15] gi|220964705|gb|ACL96061.1| SSU ribosomal protein S4P [Caulobacter crescentus NA1000] Length = 205 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 143/205 (69%), Positives = 171/205 (83%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GENLWGRPKSPVN+RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKIDRRMGENLWGRPKSPVNSRSYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++EK+F ++EA R +G+TS NLI+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNLTEKQFSRTYEEAARRKGNTSENLIALLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYRCK GDVI+V++KS+ +A VLEA ERD EY+SV+ ++ ATFV Sbjct: 121 VTVNGKRVNIPSYRCKAGDVIQVREKSRNMALVLEAVASNERDFAEYVSVDAKSLSATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P L +VPYPV M+PNLVVEFY+ Sbjct: 181 RAP-ELSEVPYPVKMEPNLVVEFYA 204 >gi|260576499|ref|ZP_05844489.1| ribosomal protein S4 [Rhodobacter sp. SW2] gi|259021382|gb|EEW24688.1| ribosomal protein S4 [Rhodobacter sp. SW2] Length = 206 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/206 (67%), Positives = 164/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGR KSP+N R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRAKSPLNKREYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT L+ LE RLD + YRAK V TIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIFAEAERVKGDTGEMLVGLLERRLDAVCYRAKLVATIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYR KEGD+IEV+QKSKQLA +LEASQL ERD+P+Y+ V+ + FV Sbjct: 121 VTVNGVRVNIASYRVKEGDIIEVRQKSKQLALILEASQLTERDIPDYLEVDQSKLTVKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-GLGDVPYPVQMEPNLVVEFYAK 205 >gi|307945603|ref|ZP_07660939.1| ribosomal protein S4 [Roseibium sp. TrichSKD4] gi|307771476|gb|EFO30701.1| ribosomal protein S4 [Roseibium sp. TrichSKD4] Length = 205 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/206 (68%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGRPKSP N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKYKIDRRMGENIWGRPKSPANKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F ++ EA R +GDTS NLI LE RLD I+YRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFHKVYVEASRMKGDTSENLIGLLERRLDAIIYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SYR + GDVIEV++KSKQ+ VLEA Q AERDVP+Y+ +H M AT+ Sbjct: 121 IKVNGKRVNIPSYRVRPGDVIEVREKSKQMGLVLEAVQSAERDVPDYVDADHAKMTATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P S DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-SFADVPYPVQMEPNLVVEFYSR 205 >gi|315500061|ref|YP_004088864.1| ribosomal protein s4 [Asticcacaulis excentricus CB 48] gi|315418073|gb|ADU14713.1| ribosomal protein S4 [Asticcacaulis excentricus CB 48] Length = 205 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 141/205 (68%), Positives = 172/205 (83%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DR +GENLWGRPKSPVN RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKLDRAMGENLWGRPKSPVNKRSYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F I++EADR +G+TS NLI+ LESRLD IVYR KFVPT++AARQFVNH H Sbjct: 61 YYGNITEKQFSKIYEEADRRKGNTSENLIALLESRLDAIVYRCKFVPTVWAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR K GDVIEV+++S+ +A VLEA Q ERDVP+YI ++ M AT++ Sbjct: 121 VLVNGKKVNIASYRVKVGDVIEVRERSRNMALVLEALQSPERDVPDYIELDAKAMKATYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L +VPYPV M+PNL+VE+YS Sbjct: 181 RLP-ELSEVPYPVKMEPNLIVEYYS 204 >gi|158423848|ref|YP_001525140.1| 30S ribosomal protein S4 [Azorhizobium caulinodans ORS 571] gi|189045363|sp|A8I889|RS4_AZOC5 RecName: Full=30S ribosomal protein S4 gi|158330737|dbj|BAF88222.1| ribosomal protein S4 [Azorhizobium caulinodans ORS 571] Length = 205 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+KHKIDRR+GEN+WGR KSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRISAKHKIDRRMGENIWGRSKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I EK+F +++ EA R +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGSIGEKQFHAVYVEASRLKGDTGANLIGLLERRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GDVIEV++ SKQ+A VLEA QLAERDVP+Y+ V+H+ + A F Sbjct: 121 VKVNGRRVNIPSYQVKVGDVIEVREASKQMALVLEAVQLAERDVPDYLEVDHNRLTAKFN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLVVEFYSR Sbjct: 181 RIP-ELNEVPYPVQMEPNLVVEFYSR 205 >gi|295688620|ref|YP_003592313.1| 30S ribosomal protein S4 [Caulobacter segnis ATCC 21756] gi|295430523|gb|ADG09695.1| ribosomal protein S4 [Caulobacter segnis ATCC 21756] Length = 205 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 144/205 (70%), Positives = 168/205 (81%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GENLWGRPKSPVN+RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKIDRRMGENLWGRPKSPVNSRSYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++EK+F ++EA R +G+TS NLI LESRLD IVYRAKFVPT FAARQFVNH H Sbjct: 61 YYGNLTEKQFSRTYEEAARRKGNTSENLIGLLESRLDAIVYRAKFVPTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYRCK GDVI V++KS+ +A VLE+ ERD EY+SV +M ATFV Sbjct: 121 VLVNGKRVNIPSYRCKPGDVISVREKSRNMALVLESLASNERDFCEYVSVEAKSMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P L +VPYPV M+PNLVVEFY+ Sbjct: 181 RAP-ELSEVPYPVKMEPNLVVEFYA 204 >gi|114771201|ref|ZP_01448621.1| 30S ribosomal protein S4 [alpha proteobacterium HTCC2255] gi|114548126|gb|EAU51013.1| 30S ribosomal protein S4 [alpha proteobacterium HTCC2255] Length = 206 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 139/206 (67%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHK+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKQKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA R GDT NL+ LE RLD +VYR+KFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAVRVNGDTGENLVGLLERRLDAVVYRSKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV++KS+Q+A V+EA AERD EYI+V+ M A FV Sbjct: 121 VTVNGKKVNIPSYRVKEGDVIEVREKSRQMALVIEALASAERDFAEYINVDASKMKAEFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPVIM+PNLVVE+Y++ Sbjct: 181 RTP-VLADVPYPVIMEPNLVVEYYAK 205 >gi|197104460|ref|YP_002129837.1| ribosomal protein S4 [Phenylobacterium zucineum HLK1] gi|226699100|sp|B4RHE8|RS4_PHEZH RecName: Full=30S ribosomal protein S4 gi|196477880|gb|ACG77408.1| ribosomal protein S4 [Phenylobacterium zucineum HLK1] Length = 205 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 140/205 (68%), Positives = 171/205 (83%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN+R+YGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKLDRRMGENIWGRPKSPVNSRAYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F I+ EA R +G+TS NLI+ LESRLD +VYRAKFVPT FAARQFVNH H Sbjct: 61 YYGNITEKQFVRIYTEAARRKGNTSENLIALLESRLDAVVYRAKFVPTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR K GDV+ V+++S+ +A VLEA Q +ERD P+YI+++ M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKPGDVVSVRERSRNMALVLEALQSSERDTPDYITLDAKGMSATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P L +VPYPV M+PNLVVEFY+ Sbjct: 181 RAP-ELAEVPYPVKMEPNLVVEFYA 204 >gi|146339797|ref|YP_001204845.1| 30S ribosomal protein S4 [Bradyrhizobium sp. ORS278] gi|172046996|sp|A4YRT2|RS4_BRASO RecName: Full=30S ribosomal protein S4 gi|146192603|emb|CAL76608.1| 30S ribosomal subunit protein S4 [Bradyrhizobium sp. ORS278] Length = 205 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F I+ EA R +GDT NLI LE RLDT+V+RAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHGIYVEAGRLKGDTGENLIGILERRLDTVVFRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ SKQLA VLEA+QLAERDVP+YI +H M A F+ Sbjct: 121 IKVNGRKVNIASYQVKPGDVIEVKEASKQLAVVLEATQLAERDVPDYIEADHSKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-ALSDVPFAVQMEPHLIVEFYSR 205 >gi|148256683|ref|YP_001241268.1| 30S ribosomal protein S4 [Bradyrhizobium sp. BTAi1] gi|172047313|sp|A5EMG8|RS4_BRASB RecName: Full=30S ribosomal protein S4 gi|146408856|gb|ABQ37362.1| SSU ribosomal protein S4P [Bradyrhizobium sp. BTAi1] Length = 205 Score = 294 bits (752), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F I+ EA R +GDT NLI LE RLDT+V+RAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHGIYVEAGRLKGDTGENLIGILERRLDTVVFRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ SKQLA VLEA+QLAERDVP+YI +H M A F+ Sbjct: 121 IKVNGRKVNIASYQVKPGDVIEVKEASKQLAIVLEATQLAERDVPDYIEADHSKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-ALSDVPFAVQMEPHLIVEFYSR 205 >gi|167647476|ref|YP_001685139.1| 30S ribosomal protein S4 [Caulobacter sp. K31] gi|189045368|sp|B0T660|RS4_CAUSK RecName: Full=30S ribosomal protein S4 gi|167349906|gb|ABZ72641.1| RNA-binding S4 domain protein [Caulobacter sp. K31] Length = 205 Score = 293 bits (751), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 138/205 (67%), Positives = 168/205 (81%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GENLWGRPKSPVN RSYGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKIDRRMGENLWGRPKSPVNQRSYGPGQHGQRRKQKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++EK+F ++EA R +G+T+ NL+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNLTEKQFSRTYEEAARRKGNTAENLVGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYRCK GDVI V++KS+ +A VLEA +ERD EYI+V+ + A+F+ Sbjct: 121 VTVNGKRVNIASYRCKIGDVIAVREKSRNMALVLEAVASSERDFCEYITVDAKGLEASFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L +VPYPV M+PNLVVEFY+ Sbjct: 181 RVP-ELSEVPYPVKMEPNLVVEFYA 204 >gi|86750809|ref|YP_487305.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris HaA2] gi|123407656|sp|Q2ITR6|RS4_RHOP2 RecName: Full=30S ribosomal protein S4 gi|86573837|gb|ABD08394.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris HaA2] Length = 205 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F SI+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHSIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GD+IEVK+ SKQLA VLEASQLAERDVP+YI V+H+ M A F Sbjct: 121 IKVNGKRVNISSYKVRVGDLIEVKESSKQLAFVLEASQLAERDVPDYIEVDHNKMTAKFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-ALTDVPFAVQMEPHLIVEFYSR 205 >gi|27380817|ref|NP_772346.1| 30S ribosomal protein S4 [Bradyrhizobium japonicum USDA 110] gi|41017838|sp|Q89ID3|RS4_BRAJA RecName: Full=30S ribosomal protein S4 gi|27353982|dbj|BAC50971.1| 30S ribosomal protein S4 [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F I+ EA R +GDT NLI LE RLD +VYRAKFV TIFAARQF+NH H Sbjct: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDAVVYRAKFVSTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDV+EVK+ SKQLA VLEASQL ERD P+Y+ V+H M A ++ Sbjct: 121 IKVNGRKVNISSYQLKVGDVVEVKEASKQLAHVLEASQLPERDTPDYLDVDHGKMTAKYI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+PV M+P+LVVEFYSR Sbjct: 181 RIP-GLSDVPFPVQMEPHLVVEFYSR 205 >gi|39934659|ref|NP_946935.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris CGA009] gi|192290175|ref|YP_001990780.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris TIE-1] gi|61215592|sp|Q6N9G0|RS4_RHOPA RecName: Full=30S ribosomal protein S4; AltName: Full=RRP-S4 gi|226699113|sp|B3Q7H1|RS4_RHOPT RecName: Full=30S ribosomal protein S4 gi|39648509|emb|CAE27030.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris CGA009] gi|192283924|gb|ACF00305.1| RNA-binding S4 domain protein [Rhodopseudomonas palustris TIE-1] Length = 205 Score = 291 bits (744), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLD +VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDAVVYRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GDVIEVK+ SKQLA VLEASQLAERDVP+YI V+H+ M A F Sbjct: 121 IKVNGKRVNIPSYKVRVGDVIEVKEASKQLAFVLEASQLAERDVPDYIEVDHNKMTAKFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-ALSDVPFAVQMEPHLIVEFYSR 205 >gi|75675508|ref|YP_317929.1| 30S ribosomal protein S4 [Nitrobacter winogradskyi Nb-255] gi|90101700|sp|Q3ST14|RS4_NITWN RecName: Full=30S ribosomal protein S4 gi|74420378|gb|ABA04577.1| SSU ribosomal protein S4P [Nitrobacter winogradskyi Nb-255] Length = 205 Score = 291 bits (744), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFVPTIFAARQF+NH H Sbjct: 61 YYGNISERQFYAIYVEATRMKGDSGENLIGLLERRLDTVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GD +EVK SKQLA VLEA+QLAERDVP++I +H+ A F+ Sbjct: 121 VKVNGRRVNIPSYKLKVGDTVEVKDASKQLALVLEANQLAERDVPDFIDADHNKQSAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-QLADVPFAVQMEPHLIVEFYSR 205 >gi|298292130|ref|YP_003694069.1| ribosomal protein S4 [Starkeya novella DSM 506] gi|296928641|gb|ADH89450.1| ribosomal protein S4 [Starkeya novella DSM 506] Length = 205 Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+KHK+DRR+GEN+WGRPKSP+N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRVSAKHKLDRRMGENIWGRPKSPINKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY I EK+F +++ EA R +GDT NLI LE RLD ++YRAKFVPT+FAARQFV+H H Sbjct: 61 YYASIGEKQFYAVYVEASRLKGDTGANLIGLLERRLDAVIYRAKFVPTVFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ SKQL VLEA ERDVP+Y+ V+H M A F Sbjct: 121 IKVNGRRVNIPSYQVKVGDVIEVKEASKQLVLVLEAVASGERDVPDYLEVDHSKMTAKFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV+M+PNLVVE+YSR Sbjct: 181 RIP-ELNEVPYPVVMEPNLVVEYYSR 205 >gi|91976243|ref|YP_568902.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisB5] gi|123735552|sp|Q13A88|RS4_RHOPS RecName: Full=30S ribosomal protein S4 gi|91682699|gb|ABE39001.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisB5] Length = 205 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/206 (66%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYR+KFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GDVIEVK+ SKQLA VLEA+QLAERDVP+YI V+H+ M A F Sbjct: 121 IKVNGKRVNISSYKVRVGDVIEVKEASKQLAIVLEANQLAERDVPDYIDVDHNKMTAKFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-ALSDVPFAVQMEPHLIVEFYSR 205 >gi|85715178|ref|ZP_01046162.1| Ribosomal protein S4 [Nitrobacter sp. Nb-311A] gi|85698093|gb|EAQ35966.1| Ribosomal protein S4 [Nitrobacter sp. Nb-311A] Length = 205 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISERQFYAIYVEATRMKGDSGENLIGLLERRLDTVVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GD +EVK SKQLA VLEA+QLAERDVP++I +H+ A F+ Sbjct: 121 VKVNGRRVNIPSYKLKVGDTVEVKDASKQLALVLEANQLAERDVPDFIDADHNKQSAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-QLADVPFAVQMEPHLIVEFYSR 205 >gi|115523649|ref|YP_780560.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisA53] gi|115517596|gb|ABJ05580.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisA53] Length = 222 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 18 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 77 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 78 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVATMFAARQFINHGH 137 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ K GD+IEVK+ SKQLA VLEASQL ERD P+Y+ V+H M A F+ Sbjct: 138 VKVNGKRVNISSYKVKVGDLIEVKESSKQLAFVLEASQLGERDTPDYVEVDHSKMTAKFI 197 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVP+ V M+P+L+VEFYSR Sbjct: 198 RVP-HLSDVPFAVQMEPHLIVEFYSR 222 >gi|152112255|sp|Q07R54|RS4_RHOP5 RecName: Full=30S ribosomal protein S4 Length = 205 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVATMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ K GD+IEVK+ SKQLA VLEASQL ERD P+Y+ V+H M A F+ Sbjct: 121 VKVNGKRVNISSYKVKVGDLIEVKESSKQLAFVLEASQLGERDTPDYVEVDHSKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVP+ V M+P+L+VEFYSR Sbjct: 181 RVP-HLSDVPFAVQMEPHLIVEFYSR 205 >gi|90423114|ref|YP_531484.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisB18] gi|122476766|sp|Q218M1|RS4_RHOPB RecName: Full=30S ribosomal protein S4 gi|90105128|gb|ABD87165.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisB18] Length = 205 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F SI+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHSIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ K GD++EVK+ SKQL VLEA+QLAERDVP++I V+H M A F+ Sbjct: 121 VKVNGKRVNIASYKVKVGDLVEVKESSKQLTFVLEANQLAERDVPDFIEVDHGKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-HLSDVPFAVQMEPHLIVEFYSR 205 >gi|316935241|ref|YP_004110223.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris DX-1] gi|315602955|gb|ADU45490.1| ribosomal protein S4 [Rhodopseudomonas palustris DX-1] Length = 205 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLD +VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDAVVYRAKFVATMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GDVIEVK+ SKQLA VLEASQL ERDVP+YI V+H+ M A F Sbjct: 121 IRVNGKRVNIPSYKLRVGDVIEVKEASKQLAFVLEASQLGERDVPDYIEVDHNKMTAKFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-ALSDVPFAVQMEPHLIVEFYSR 205 >gi|217976302|ref|YP_002360449.1| 30S ribosomal protein S4 [Methylocella silvestris BL2] gi|254764599|sp|B8EL92|RS4_METSB RecName: Full=30S ribosomal protein S4 gi|217501678|gb|ACK49087.1| RNA-binding S4 domain protein [Methylocella silvestris BL2] Length = 205 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QL+AKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R RGD+ NLI LE RLD ++YRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFRKYYAEAIRLRGDSGDNLIGLLERRLDAVIYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDVIEVK+ S+++ VLEA QLAERDVP+Y V+H+ M A Sbjct: 121 VKVNGKRVNIASYLVKVGDVIEVKESSREILIVLEAKQLAERDVPDYYEVDHNKMTAKIT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP DVPYPV+M+PNLV+EFYSR Sbjct: 181 RIPLP-ADVPYPVLMEPNLVIEFYSR 205 >gi|92117193|ref|YP_576922.1| 30S ribosomal protein S4 [Nitrobacter hamburgensis X14] gi|122418035|sp|Q1QMT5|RS4_NITHX RecName: Full=30S ribosomal protein S4 gi|91800087|gb|ABE62462.1| SSU ribosomal protein S4P [Nitrobacter hamburgensis X14] Length = 205 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYANISERQFYAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GD IEVK SKQLA VLEA+QLAERDVP++I +H+ A FV Sbjct: 121 VKVNGRRVNIPSYKLKVGDAIEVKDASKQLALVLEANQLAERDVPDFIDADHNKQTAKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-HLADVPFAVQMEPHLIVEFYSR 205 >gi|299131719|ref|ZP_07024914.1| ribosomal protein S4 [Afipia sp. 1NLS2] gi|298591856|gb|EFI52056.1| ribosomal protein S4 [Afipia sp. 1NLS2] Length = 205 Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 134/206 (65%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +++ EA R +GD+ NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYANISERQFYAVYVEATRLKGDSGENLIGLLERRLDAIVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ K GDVIEVK SKQLA+VLEA+QLAERDVP++I V+H A F Sbjct: 121 IKVNGKRVNIPSYKVKVGDVIEVKDASKQLATVLEANQLAERDVPDFIEVDHGKQTAKFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VP+PV M+P+L++EFYSR Sbjct: 181 RVP-NLSEVPFPVQMEPHLIIEFYSR 205 >gi|182678240|ref|YP_001832386.1| 30S ribosomal protein S4 [Beijerinckia indica subsp. indica ATCC 9039] gi|226697805|sp|B2IJM5|RS4_BEII9 RecName: Full=30S ribosomal protein S4 gi|182634123|gb|ACB94897.1| RNA-binding S4 domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGR KSPVN R YGPG HGQRRK K S FG QL+AKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRSKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GD+ NLI LE RLD +VYRAKFVPT+FA+RQF+NH H Sbjct: 61 YYGNISEKQFRKYYAEAIRMKGDSGDNLIGLLERRLDAVVYRAKFVPTVFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ + GDVIEVK+ S+QL VLEASQLAERDVPEY V+H M A Sbjct: 121 IKVNGRRVNIASYQVRVGDVIEVKEASRQLTLVLEASQLAERDVPEYYDVDHGKMSAKVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +VPYPVIM+PNLV+EFYSR Sbjct: 181 RIPLP-NEVPYPVIMEPNLVIEFYSR 205 >gi|209884598|ref|YP_002288455.1| ribosomal protein S4 [Oligotropha carboxidovorans OM5] gi|226699096|sp|B6JDU6|RS4_OLICO RecName: Full=30S ribosomal protein S4 gi|209872794|gb|ACI92590.1| ribosomal protein S4 [Oligotropha carboxidovorans OM5] Length = 205 Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +++ EA R +GD+ NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYANISERQFYAVYVEATRLKGDSGENLIGLLERRLDAIVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ K GDVIEVK SKQLA VLEA+QLAERDVP+++ V+H A F Sbjct: 121 IKVNGKRVNIPSYKVKVGDVIEVKDASKQLALVLEANQLAERDVPDFLDVDHGKQTAKFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP SL +VP+PV M+P+L++EFYSR Sbjct: 181 RIP-SLSEVPFPVQMEPHLIIEFYSR 205 >gi|163854133|ref|YP_001642176.1| 30S ribosomal protein S4 [Methylobacterium extorquens PA1] gi|218533078|ref|YP_002423894.1| 30S ribosomal protein S4 [Methylobacterium chloromethanicum CM4] gi|240141590|ref|YP_002966070.1| 30S ribosomal protein S4 [Methylobacterium extorquens AM1] gi|254564101|ref|YP_003071196.1| 30S ribosomal protein S4 [Methylobacterium extorquens DM4] gi|226699086|sp|A9W966|RS4_METEP RecName: Full=30S ribosomal protein S4 gi|254764596|sp|B7KVN1|RS4_METC4 RecName: Full=30S ribosomal protein S4 gi|163665738|gb|ABY33105.1| RNA-binding S4 domain protein [Methylobacterium extorquens PA1] gi|218525381|gb|ACK85966.1| RNA-binding S4 domain protein [Methylobacterium chloromethanicum CM4] gi|240011567|gb|ACS42793.1| 30S ribosomal protein S4 [Methylobacterium extorquens AM1] gi|254271379|emb|CAX27392.1| 30S ribosomal protein S4 [Methylobacterium extorquens DM4] Length = 205 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/206 (67%), Positives = 162/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRVQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R RGD+ NLI LE RLD +VYR+KFV T FAARQFVNH H Sbjct: 61 YYGNITEKQFRRYYAEAIRLRGDSGENLIGLLERRLDAVVYRSKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ S+QL V+ ASQLAERDVP+YI V+H M A Sbjct: 121 IKVNGRRVNIPSYQVKAGDVIEVKEASRQLEIVVVASQLAERDVPDYIEVDHHKMTARVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLV+EFYSR Sbjct: 181 RIP-GLTEVPYPVQMEPNLVIEFYSR 205 >gi|188584461|ref|YP_001927906.1| 30S ribosomal protein S4 [Methylobacterium populi BJ001] gi|226699088|sp|B1ZAP8|RS4_METPB RecName: Full=30S ribosomal protein S4 gi|179347959|gb|ACB83371.1| RNA-binding S4 domain protein [Methylobacterium populi BJ001] Length = 205 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/206 (67%), Positives = 162/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRVQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R RGD+ NLI LE RLD +VYR+KFV T FAARQFVNH H Sbjct: 61 YYGNITEKQFRRYYAEAIRLRGDSGENLIGLLERRLDAVVYRSKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ S+QL V+ ASQLAERDVP+YI V+H M A Sbjct: 121 IKVNGRRVNIPSYQVKAGDVIEVKEASRQLEIVVVASQLAERDVPDYIEVDHQKMSARVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLV+EFYSR Sbjct: 181 RIP-GLSEVPYPVQMEPNLVIEFYSR 205 >gi|163793622|ref|ZP_02187597.1| Ribosomal protein S4 [alpha proteobacterium BAL199] gi|159181424|gb|EDP65939.1| Ribosomal protein S4 [alpha proteobacterium BAL199] Length = 204 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 134/206 (65%), Positives = 167/206 (81%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KRE +KHKIDRR+G NLWGRPKSP+N R YGPG HGQRR+ KPS +G+QL AKQK+K Sbjct: 1 MAKREQAKHKIDRRLGVNLWGRPKSPLNNREYGPGQHGQRRR-KPSDYGIQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR + EA R RGDT NL+ LESRLD ++YR KFVPT+FAARQFV+H H Sbjct: 60 YYGNIGEKQFRKYYAEAVRRRGDTGENLVGILESRLDAVIYRMKFVPTVFAARQFVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VN+ S+ K+GDVIEVK+KS++L VLEA Q +ERD+P+Y+ V+H M TF+ Sbjct: 120 VKVNGRRVNVPSFMVKDGDVIEVKEKSRELPMVLEAVQSSERDLPDYMEVDHSAMKGTFL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L+DVPYPV M+PNLV+E+YSR Sbjct: 180 RLP-KLEDVPYPVQMEPNLVIEYYSR 204 >gi|114569567|ref|YP_756247.1| 30S ribosomal protein S4 [Maricaulis maris MCS10] gi|122316382|sp|Q0AQX8|RS4_MARMM RecName: Full=30S ribosomal protein S4 gi|114340029|gb|ABI65309.1| SSU ribosomal protein S4P [Maricaulis maris MCS10] Length = 205 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/205 (67%), Positives = 164/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GENLWGRPKSPVN+RSYGPG HGQRRK+K S FGLQL AKQK+K Sbjct: 1 MSKRHSQKYKIDRRMGENLWGRPKSPVNSRSYGPGQHGQRRKTKMSDFGLQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R +G+T+ LI LESRLD IVYR KFVPT+FA+RQFVNH H Sbjct: 61 YYGNITEKQFRRTYDEASRRKGNTAELLIGLLESRLDAIVYRCKFVPTVFASRQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYRCK GDVIEV+++S+ +A VLEA ERD+PEYI ++ M ATFV Sbjct: 121 VKVNGIKVNIPSYRCKPGDVIEVRERSRSMALVLEALDSPERDLPEYIDLDAKAMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P +VPY V M+PNLV+EFYS Sbjct: 181 RMP-EFSEVPYAVQMEPNLVIEFYS 204 >gi|154248016|ref|YP_001418974.1| 30S ribosomal protein S4 [Xanthobacter autotrophicus Py2] gi|226701078|sp|A7IMS4|RS4_XANP2 RecName: Full=30S ribosomal protein S4 gi|154162101|gb|ABS69317.1| RNA-binding S4 domain protein [Xanthobacter autotrophicus Py2] Length = 205 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/206 (66%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR ++KHKIDRR+GEN+WGR KSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRIAAKHKIDRRMGENIWGRSKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I EK+F ++ EA R +GDT NLI LE RLD +VYRAKFVPTIFAARQFV+H H Sbjct: 61 YYGSIGEKQFHKVYVEASRLKGDTGANLIGLLERRLDAVVYRAKFVPTIFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDV+EVK+ S+Q+ VLEA QL ERDVP+YI ++ + A F Sbjct: 121 VKVNGQRVNIPSYLVKVGDVVEVKEASRQMTLVLEAQQLGERDVPDYIELDAGKLAARFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLVVEFYSR Sbjct: 181 RIP-ELNEVPYPVQMEPNLVVEFYSR 205 >gi|148259677|ref|YP_001233804.1| 30S ribosomal protein S4 [Acidiphilium cryptum JF-5] gi|326403353|ref|YP_004283434.1| 30S ribosomal protein S4 [Acidiphilium multivorum AIU301] gi|172047761|sp|A5FWA3|RS4_ACICJ RecName: Full=30S ribosomal protein S4 gi|146401358|gb|ABQ29885.1| SSU ribosomal protein S4P [Acidiphilium cryptum JF-5] gi|325050214|dbj|BAJ80552.1| 30S ribosomal protein S4 [Acidiphilium multivorum AIU301] Length = 204 Score = 284 bits (726), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 140/206 (67%), Positives = 164/206 (79%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK+KI+RR+G NLWGRPKSP+N R YGPG HGQRRK KPS FG+QL AKQK++ Sbjct: 1 MTKRTESKYKINRRLGVNLWGRPKSPINKREYGPGQHGQRRK-KPSDFGVQLMAKQKLRG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F ++EA R RGDTS NLI LE RLD +VYR KF T FAARQFV+H H Sbjct: 60 YYGNISEKQFYKYYEEAVRRRGDTSENLIELLERRLDAVVYRMKFAITPFAARQFVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNGR VNI SY+ ++GDV+EV++KSKQLA VL++ Q AERDVPEYI V+H M TF Sbjct: 120 VLVNGRRVNISSYQVRDGDVVEVREKSKQLAMVLDSVQSAERDVPEYIEVDHRAMKGTFA 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFYSR Sbjct: 180 RAP-KLADVPYPVQMEPNLVVEFYSR 204 >gi|83592040|ref|YP_425792.1| 30S ribosomal protein S4 [Rhodospirillum rubrum ATCC 11170] gi|90101712|sp|Q2RWJ0|RS4_RHORT RecName: Full=30S ribosomal protein S4 gi|83574954|gb|ABC21505.1| SSU ribosomal protein S4P [Rhodospirillum rubrum ATCC 11170] Length = 204 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M KR +SKHKIDRR+G NLWGRPKSP+N R YGPG HGQRR+ KPS FG+QL AKQK+K Sbjct: 1 MGKRLNSKHKIDRRLGVNLWGRPKSPINKREYGPGEHGQRRR-KPSDFGIQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK FR ++EA RGDTS NLIS LE+RLD +VYR K VPT+F++RQ +NH H Sbjct: 60 YYGNISEKAFRKYYEEASSRRGDTSENLISILETRLDAVVYRMKIVPTVFSSRQIINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR V++ SYR +EGDVIEVK+KS+Q+ +LEA Q ERD+PEYI+++ + TF+ Sbjct: 120 ILVNGRRVSVASYRVQEGDVIEVKEKSRQMPLILEALQSHERDIPEYITMDLAHAKGTFL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L+DVPYPV M+PNLVVEFYSR Sbjct: 180 RAP-KLEDVPYPVQMEPNLVVEFYSR 204 >gi|323137934|ref|ZP_08073009.1| ribosomal protein S4 [Methylocystis sp. ATCC 49242] gi|322396937|gb|EFX99463.1| ribosomal protein S4 [Methylocystis sp. ATCC 49242] Length = 205 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/206 (64%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+K+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S +G QL+AKQK+K Sbjct: 1 MTKRAEAKYKLDRRLGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GD+ NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFRKYYAEAIRMKGDSGDNLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY K GDVIEVK+ SKQ +VLE+ LAERD PEY V+H M A Sbjct: 121 IRVNGRRVNIPSYLVKVGDVIEVKEASKQAVTVLESVALAERDTPEYYDVDHSKMTAKLT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + +VPYPV M+PNLV+EFYSR Sbjct: 181 RVPHAT-EVPYPVQMEPNLVIEFYSR 205 >gi|329888167|ref|ZP_08266765.1| ribosomal protein S4 [Brevundimonas diminuta ATCC 11568] gi|328846723|gb|EGF96285.1| ribosomal protein S4 [Brevundimonas diminuta ATCC 11568] Length = 205 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 134/205 (65%), Positives = 165/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DR +GENLWGR KSPVN RSYGPG HGQRRKSK S FGLQL+AKQK+K Sbjct: 1 MSKRHSAKYKLDRAMGENLWGRAKSPVNKRSYGPGQHGQRRKSKVSDFGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F + + EA R +G+TS NLI LESRLD IVYRAKFVPT++AARQFV+H H Sbjct: 61 YYGNITEKQFAATYAEAARRKGNTSENLIGLLESRLDAIVYRAKFVPTVWAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+IGSYR K GDV+EVK+KS+ +A VLEA Q +ERD+P+Y+ + + Sbjct: 121 VTVNGKKVDIGSYRVKVGDVVEVKEKSRNMALVLEAQQSSERDLPDYLELGDRGFSVRYG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L DVPYPV M+PNLVVE+YS Sbjct: 181 RVP-ELSDVPYPVKMEPNLVVEYYS 204 >gi|310815406|ref|YP_003963370.1| ribosomal protein S4 [Ketogulonicigenium vulgare Y25] gi|308754141|gb|ADO42070.1| ribosomal protein S4 [Ketogulonicigenium vulgare Y25] Length = 192 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 131/192 (68%), Positives = 159/192 (82%), Gaps = 1/192 (0%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +GEN+WGRPKSP+N R YGPG HGQRRK K S FG QLRAKQK+K YYGD++EK+FR I+ Sbjct: 1 MGENIWGRPKSPLNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKGYYGDLTEKQFRRIY 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 +A+R++GDT NL+ LE RLD +VYRAK+V T+FAARQFVNH HV VNG SVNI SYR Sbjct: 61 SDAERTKGDTGENLVGLLERRLDAVVYRAKWVATVFAARQFVNHGHVTVNGVSVNIPSYR 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 KEGDVIE++ KSKQLA VLEA LAER+VP+YI V++ + AT+VR P SL DVPYPVI Sbjct: 121 VKEGDVIEIRAKSKQLAVVLEAINLAERNVPDYIEVDNSKLTATYVRTP-SLADVPYPVI 179 Query: 195 MQPNLVVEFYSR 206 M+PNL+VEFY++ Sbjct: 180 MEPNLIVEFYAK 191 >gi|83858775|ref|ZP_00952297.1| 30S ribosomal protein S4 [Oceanicaulis alexandrii HTCC2633] gi|83853598|gb|EAP91450.1| 30S ribosomal protein S4 [Oceanicaulis alexandrii HTCC2633] Length = 205 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/205 (66%), Positives = 162/205 (79%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGR KSPVN RSYGPG HGQRR K S FGLQLRAKQK+K Sbjct: 1 MSKRHSQKYKIDRRMGENIWGRAKSPVNKRSYGPGQHGQRRAGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F+ I+ EA R +G+T+ NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNITEKQFKRIYTEAQRLKGNTAENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDV+EV++KS+ +A VLEA ERDVP+YI ++ M AT+ Sbjct: 121 VRVNGKRVNIASYMVKPGDVVEVREKSRSMALVLEALGSPERDVPDYIDLDPKAMKATYT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P +VPYPV M+PNLVVEFYS Sbjct: 181 RKP-EFNEVPYPVKMEPNLVVEFYS 204 >gi|170748158|ref|YP_001754418.1| 30S ribosomal protein S4 [Methylobacterium radiotolerans JCM 2831] gi|226699089|sp|B1M7L0|RS4_METRJ RecName: Full=30S ribosomal protein S4 gi|170654680|gb|ACB23735.1| RNA-binding S4 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 281 bits (720), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 136/206 (66%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRIQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R RGD+ NL+ LE RLD +VYRAKFV T FAARQFVNH H Sbjct: 61 YYGNITEKQFRRYYAEAIRLRGDSGENLVGLLERRLDAVVYRAKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SY+ K GD+IEVK+ S+QL V+ A+QL+ERDVP+YI +H M A Sbjct: 121 VKVNGVRVNIPSYQVKAGDLIEVKESSRQLEIVIVATQLSERDVPDYIEADHAKMTARVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP SL +VPYPV M+PNLV+EFYSR Sbjct: 181 RIP-SLSEVPYPVQMEPNLVIEFYSR 205 >gi|220920404|ref|YP_002495705.1| 30S ribosomal protein S4 [Methylobacterium nodulans ORS 2060] gi|254764597|sp|B8IB09|RS4_METNO RecName: Full=30S ribosomal protein S4 gi|219945010|gb|ACL55402.1| RNA-binding S4 domain protein [Methylobacterium nodulans ORS 2060] Length = 205 Score = 280 bits (717), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 136/206 (66%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRIQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +I+EK+FR + EA R RGD+ NLI LE RLD ++YRAKFV T FAARQFVNH H Sbjct: 61 YYANITEKQFRRYYAEAIRLRGDSGENLIGLLERRLDAVIYRAKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI S+ K GDVIEVK+ SKQL V+ ASQLAERDVP+YI V+H M A F Sbjct: 121 IKVNGQRVNIPSFLVKPGDVIEVKESSKQLEIVVVASQLAERDVPDYIEVDHGKMTARFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PN V+EFYSR Sbjct: 181 RVP-TLSEVPYPVHMEPNQVIEFYSR 205 >gi|170740488|ref|YP_001769143.1| 30S ribosomal protein S4 [Methylobacterium sp. 4-46] gi|226699090|sp|B0UDI8|RS4_METS4 RecName: Full=30S ribosomal protein S4 gi|168194762|gb|ACA16709.1| RNA-binding S4 domain protein [Methylobacterium sp. 4-46] Length = 205 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRIQAKHKLDRRLGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +I+EK+FR + EA R RGD+ NL+ LE RLD +VYR+KFV T FAARQFVNH H Sbjct: 61 YYANITEKQFRRYYAEAIRLRGDSGENLVGLLERRLDAVVYRSKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY K GDVIEVK+ SKQL V+ ASQLAERDVP+YI +H M A F Sbjct: 121 IRVNGQRVNIPSYLVKPGDVIEVKESSKQLEIVVVASQLAERDVPDYIEADHGKMTARFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PN V+EFYSR Sbjct: 181 RVP-TLSEVPYPVHMEPNQVIEFYSR 205 >gi|254418524|ref|ZP_05032248.1| ribosomal protein S4 [Brevundimonas sp. BAL3] gi|196184701|gb|EDX79677.1| ribosomal protein S4 [Brevundimonas sp. BAL3] Length = 205 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 133/205 (64%), Positives = 165/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDR +GENLWGR KSPVN RSYGPG HGQRRKSK S FGLQL+AKQK+K Sbjct: 1 MSKRHSAKYKIDRAMGENLWGRAKSPVNKRSYGPGQHGQRRKSKVSDFGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F + EA R +G+TS NLI LESRLD IVYRAKFVPT++AARQFV+H H Sbjct: 61 YYGNITEKQFAKTYDEAARRKGNTSENLIGLLESRLDAIVYRAKFVPTVWAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ V+I SYR K DV+ VK+KS+ +A V+EA Q +ERDVP+Y+ ++ + +V Sbjct: 121 VLVNGKKVDISSYRVKPEDVVTVKEKSRNMALVIEAQQSSERDVPDYLELSDRSFSVRYV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L DVPYPV M+PNLVVE+Y+ Sbjct: 181 RVP-ELTDVPYPVKMEPNLVVEYYA 204 >gi|85708538|ref|ZP_01039604.1| 30S ribosomal protein S4 [Erythrobacter sp. NAP1] gi|85690072|gb|EAQ30075.1| 30S ribosomal protein S4 [Erythrobacter sp. NAP1] Length = 204 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 132/206 (64%), Positives = 163/206 (79%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKSKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FRS +K+A R +GDT NLI LE RLD IVYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFRSTYKDATRMKGDTGQNLIGLLERRLDMIVYRAKFAPTIFAARQIVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S RC GDVI + K+K++A V+EA L ER++P+Y++ + ++ V F Sbjct: 121 IYVNGVKCNIASRRCDVGDVISLGNKAKEMALVIEAQSLPEREIPDYVAPDGNDKV-QFT 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLVVEFYSR 204 >gi|152060950|sp|Q0BUS6|RS4_GRABC RecName: Full=30S ribosomal protein S4 Length = 205 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK KI+RR+G NLWGR KSP+N R Y PG HGQRRK KPS FG+QL AKQK+K Sbjct: 1 MTKRAESKFKINRRLGVNLWGRAKSPLNKRDYAPGQHGQRRKGKPSDFGIQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++EA R +GDTS NLI LE RLD ++YR KF T FAARQFVNH H Sbjct: 61 YYGNISEKQFRKYYEEAVRRKGDTSENLIELLERRLDAVIYRMKFALTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SY K GDV+EV++KSKQLA VL+A+Q ERDVPEY+ V+H M T+ Sbjct: 121 VLVNGKRVNIPSYLVKVGDVVEVREKSKQLAMVLDATQSGERDVPEYLHVDHRLMKGTYA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+E+YSR Sbjct: 181 RYP-KLSDVPYPVQMEPNLVIEYYSR 205 >gi|258542135|ref|YP_003187568.1| 30S ribosomal protein S4 [Acetobacter pasteurianus IFO 3283-01] gi|256633213|dbj|BAH99188.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-01] gi|256636272|dbj|BAI02241.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-03] gi|256639325|dbj|BAI05287.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-07] gi|256642381|dbj|BAI08336.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-22] gi|256645436|dbj|BAI11384.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-26] gi|256648489|dbj|BAI14430.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-32] gi|256651542|dbj|BAI17476.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654533|dbj|BAI20460.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-12] Length = 205 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 134/206 (65%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNRREYGPGQHGQRRKGKPSDFSVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR ++EA R +GDTS NLI+ LE RLD +VYR KF T FA+RQF++H H Sbjct: 61 YYGNITEKQFRRYYQEAVRRKGDTSENLINLLERRLDAVVYRMKFAITPFASRQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ +NI SY K+GDVIEV++KSKQLA VL+A+Q +ERDVPEY+ V+H M T++ Sbjct: 121 ILVNGKKMNIPSYLVKDGDVIEVREKSKQLAIVLDAAQSSERDVPEYMEVDHRQMKGTYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVE+YSR Sbjct: 181 RGP-QLSDVPYPVQMEPNLVVEYYSR 205 >gi|114327192|ref|YP_744349.1| 30S ribosomal protein S4 [Granulibacter bethesdensis CGDNIH1] gi|114315366|gb|ABI61426.1| SSU ribosomal protein S4P [Granulibacter bethesdensis CGDNIH1] Length = 231 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK KI+RR+G NLWGR KSP+N R Y PG HGQRRK KPS FG+QL AKQK+K Sbjct: 27 MTKRAESKFKINRRLGVNLWGRAKSPLNKRDYAPGQHGQRRKGKPSDFGIQLMAKQKLKG 86 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++EA R +GDTS NLI LE RLD ++YR KF T FAARQFVNH H Sbjct: 87 YYGNISEKQFRKYYEEAVRRKGDTSENLIELLERRLDAVIYRMKFALTPFAARQFVNHGH 146 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SY K GDV+EV++KSKQLA VL+A+Q ERDVPEY+ V+H M T+ Sbjct: 147 VLVNGKRVNIPSYLVKVGDVVEVREKSKQLAMVLDATQSGERDVPEYLHVDHRLMKGTYA 206 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+E+YSR Sbjct: 207 RYP-KLSDVPYPVQMEPNLVIEYYSR 231 >gi|329113307|ref|ZP_08242088.1| 30S ribosomal protein S4 [Acetobacter pomorum DM001] gi|326697132|gb|EGE48792.1| 30S ribosomal protein S4 [Acetobacter pomorum DM001] Length = 236 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 32 MSKRLESKYKINRRLGVNLWGRAKSPVNRREYGPGQHGQRRKGKPSDFSVQLMAKQKLKG 91 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR ++EA R +GDTS NLI+ LE RLD +VYR KF T FA+RQF++H H Sbjct: 92 YYGNITEKQFRRYYQEAVRRKGDTSENLINLLERRLDAVVYRMKFAITPFASRQFISHGH 151 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ +NI SY K+GDVIEV++KSKQLA VL+A+Q AERDVPEY+ V+H M T++ Sbjct: 152 ILVNGKKMNIPSYLVKDGDVIEVREKSKQLAIVLDAAQSAERDVPEYMEVDHRQMKGTYL 211 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVE+YSR Sbjct: 212 RGP-QLSDVPYPVQMEPNLVVEYYSR 236 >gi|58040211|ref|YP_192175.1| 30S ribosomal protein S4 [Gluconobacter oxydans 621H] gi|81672625|sp|Q5FQ27|RS4_GLUOX RecName: Full=30S ribosomal protein S4 gi|58002625|gb|AAW61519.1| SSU ribosomal protein S4P [Gluconobacter oxydans 621H] Length = 205 Score = 277 bits (709), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 157/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNRREYGPGQHGQRRKQKPSDFSIQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GDTS NLI LE RLD +VYR KF T FA+RQF++H H Sbjct: 61 YYGNISEKQFRKYYDEAVRRKGDTSENLIGLLERRLDAVVYRLKFAITPFASRQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY KEGDVIEV+ SKQLA VL+A Q ERD PEY+ V+H M TF+ Sbjct: 121 VTVNGKKVNIPSYLVKEGDVIEVRDSSKQLAIVLDAVQTGERDTPEYVEVDHRQMKGTFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFYSR Sbjct: 181 RTP-VLSDVPYPVQMEPNLVVEFYSR 205 >gi|330993329|ref|ZP_08317264.1| 30S ribosomal protein S4 [Gluconacetobacter sp. SXCC-1] gi|329759359|gb|EGG75868.1| 30S ribosomal protein S4 [Gluconacetobacter sp. SXCC-1] Length = 205 Score = 277 bits (708), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR + EA R +GDTS NLI LE RLD +VYR KF T FAARQF++H H Sbjct: 61 YYGNIGEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRLKFAITPFAARQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY ++GDVIEV++KSKQLA VL+A+Q ERDVPEY+ V+H M +F+ Sbjct: 121 ITVNGRKVNIPSYLVRDGDVIEVREKSKQLAIVLDAAQSGERDVPEYLEVDHRQMKGSFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 181 RSP-KLSDVPYPVQMEPNLVIEFYSR 205 >gi|300023627|ref|YP_003756238.1| ribosomal protein S4 [Hyphomicrobium denitrificans ATCC 51888] gi|299525448|gb|ADJ23917.1| ribosomal protein S4 [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 276 bits (707), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 133/206 (64%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +KHKIDRR+GEN+WGRPKSP+N R PG HG+RR K S FG QL+AKQK+K Sbjct: 1 MTKRIRAKHKIDRRLGENIWGRPKSPLNRRESRPGQHGERRSGKLSDFGQQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ISE++FR+ + EA R +G TS LI LE RLD +VYRAKFVPT+FAARQFV+H H Sbjct: 61 YYGSISERQFRAAYDEASRLKGSTSELLIGLLERRLDALVYRAKFVPTVFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V I SYR + GDVIEV +K+KQLA VLEA + AERDVP+Y++ +H+ M A Sbjct: 121 VTVNGKRVTIPSYRLRIGDVIEVTEKAKQLALVLEAIKSAERDVPDYVNADHNKMTAALT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L DVPYPV M+PNLVVEFYSR Sbjct: 181 RIP-ALSDVPYPVQMEPNLVVEFYSR 205 >gi|85373950|ref|YP_458012.1| 30S ribosomal protein S4 [Erythrobacter litoralis HTCC2594] gi|122544575|sp|Q2NAS6|RS4_ERYLH RecName: Full=30S ribosomal protein S4 gi|84787033|gb|ABC63215.1| ribosomal protein S4 [Erythrobacter litoralis HTCC2594] Length = 204 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKGKTSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR + EA R +GDT NLI LE RLD +VYRAKF PT+FAARQ VNH H Sbjct: 61 YYGDVTEKQFRRTYAEASRMKGDTGQNLIGLLEQRLDMVVYRAKFAPTVFAARQIVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R K GDVI + K+K++A V+EA L ER++P+Y++ + ++ V TF Sbjct: 121 IYVNGVKTNIPSARVKVGDVISLGNKAKEMALVIEAQSLPEREIPDYVAPDGNDKV-TFT 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLVVEFYSR 204 >gi|296115002|ref|ZP_06833646.1| 30S ribosomal protein S4 [Gluconacetobacter hansenii ATCC 23769] gi|295978464|gb|EFG85198.1| 30S ribosomal protein S4 [Gluconacetobacter hansenii ATCC 23769] Length = 205 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/206 (65%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSIQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR + EA R +GDTS NLI LE RLD +VYR KF T FAARQF++H H Sbjct: 61 YYGNIGEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRMKFAITPFAARQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY ++GDVIEV++KSKQLA VL+A+Q ER+VPEY+ V+H M TF Sbjct: 121 ITVNGRKVNIPSYLVRDGDVIEVREKSKQLAIVLDAAQSGEREVPEYMEVDHRQMKGTFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + L DVPYPV M+PNLV+EFYSR Sbjct: 181 RT-AKLSDVPYPVQMEPNLVIEFYSR 205 >gi|296444481|ref|ZP_06886446.1| ribosomal protein S4 [Methylosinus trichosporium OB3b] gi|296258128|gb|EFH05190.1| ribosomal protein S4 [Methylosinus trichosporium OB3b] Length = 205 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/206 (63%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK+K+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QL+AKQK+K Sbjct: 1 MTKRAESKYKLDRRLGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GD+ NLI LE RLD +VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKYYAEAIRLKGDSGDNLIGLLERRLDAVVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY K DV+EVK+ SKQ +VLE+ L ERDVP+Y V+H+ M A Sbjct: 121 IRVNGRRVNIPSYLVKLDDVVEVKESSKQAITVLESVALGERDVPDYYEVDHNKMTAKLN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +VPYPV M+PNLV+EFYSR Sbjct: 181 RVPLP-NEVPYPVQMEPNLVIEFYSR 205 >gi|329851321|ref|ZP_08266078.1| ribosomal protein S4 [Asticcacaulis biprosthecum C19] gi|328840167|gb|EGF89739.1| ribosomal protein S4 [Asticcacaulis biprosthecum C19] Length = 205 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 165/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DR +GENLWGRPKSPVN RSYGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSAKYKLDRVMGENLWGRPKSPVNKRSYGPGQHGQRRKQKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F ++EA R +G+TS NLI+ LE+RLD +VYRAKFVPT++AARQFVNH H Sbjct: 61 YYGNITEKQFLRTYEEASRRKGNTSENLIALLETRLDALVYRAKFVPTVWAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR K DV+EV+++S+ +A VLEA Q ERDVP+YI ++ A + Sbjct: 121 VTVNGQRVNIPSYRVKPDDVVEVRERSRSMALVLEALQSPERDVPDYIELDAKGQKARLI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L +VPYPV M+P+L+VE+YS Sbjct: 181 RLP-ELAEVPYPVKMEPHLIVEYYS 204 >gi|326387399|ref|ZP_08209008.1| 30S ribosomal protein S4 [Novosphingobium nitrogenifigens DSM 19370] gi|326208055|gb|EGD58863.1| 30S ribosomal protein S4 [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 162/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR++SK+KIDRR+GEN+WGRPKS VN RSYGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRKASKYKIDRRLGENIWGRPKSSVNRRSYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+S ++EA R +GDT NL+ LE RLD +VYR+KF PTIFAARQ VNH H Sbjct: 61 YYGDVTEKQFKSTYQEASRMKGDTGQNLVGLLEQRLDMVVYRSKFAPTIFAARQIVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R + GDVI + K+K++A + EA L ERDVP+Y+ ++ + V TFV Sbjct: 121 IRVNGVKCNIASRRVRPGDVITLGTKAKEMALIAEAQALPERDVPDYVLIDGTDKV-TFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVKMEPNLVVEFYSR 204 >gi|304319733|ref|YP_003853376.1| 30S ribosomal protein S4 [Parvularcula bermudensis HTCC2503] gi|303298636|gb|ADM08235.1| 30S ribosomal protein S4 [Parvularcula bermudensis HTCC2503] Length = 205 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 128/205 (62%), Positives = 160/205 (78%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+++K+KIDRR+GEN+WGRPKSP N R Y PG+HGQRR K S FG QL AKQK+K Sbjct: 1 MSKRQNAKYKIDRRVGENIWGRPKSPFNRREYKPGMHGQRRAGKMSDFGQQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F+ I+ EA + +G+T+ +I LESRLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFQRIYDEAAKRKGNTAELMIGILESRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI SYR K GDV+EV+++SK +A VLEA QL ERD+P+Y+ V+ M AT V Sbjct: 121 VKVNGVRTNIPSYRLKPGDVVEVRERSKNMALVLEALQLPERDIPDYVDVDPKKMTATLV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P DVPY M+PNLVVE+Y+ Sbjct: 181 RVP-EFSDVPYAATMEPNLVVEYYA 204 >gi|262277060|ref|ZP_06054853.1| ribosomal protein S4 [alpha proteobacterium HIMB114] gi|262224163|gb|EEY74622.1| ribosomal protein S4 [alpha proteobacterium HIMB114] Length = 205 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SKHK+DRR+G N+WGRPKSP N+R+YGPG HGQR +KPS + +QL+AKQK+K Sbjct: 1 MTKRIKSKHKVDRRLGTNIWGRPKSPFNSRAYGPGQHGQRSSAKPSDYKVQLQAKQKLKN 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++E++FR++++EADR RG+T NL+ LESRLD ++YRAKF T+F ARQ +NH H Sbjct: 61 YYGNLNERQFRNLYREADRRRGNTGENLVGLLESRLDAVIYRAKFATTVFQARQLINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI S++ + D +E+K+ SKQLA VL ++QL ERDVPEYI +H M A Sbjct: 121 VKVNGKRVNISSFKLNDKDEVEIKESSKQLAYVLASTQLKERDVPEYIFADHKKMTAKLA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++PYP IM+PNLVVE+YSR Sbjct: 181 RVP-KFDEIPYPAIMEPNLVVEYYSR 205 >gi|162147980|ref|YP_001602441.1| 30S ribosomal protein S4 [Gluconacetobacter diazotrophicus PAl 5] gi|209542598|ref|YP_002274827.1| 30S ribosomal protein S4 [Gluconacetobacter diazotrophicus PAl 5] gi|189045383|sp|A9HL98|RS4_GLUDA RecName: Full=30S ribosomal protein S4 gi|161786557|emb|CAP56139.1| 30S ribosomal protein S4 [Gluconacetobacter diazotrophicus PAl 5] gi|209530275|gb|ACI50212.1| RNA-binding S4 domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 205 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GDTS NLI LE RLD +VYR KF T FAARQFV+H H Sbjct: 61 YYGNISEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRLKFAMTPFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY ++ DVIEV++KSK LA VL+A+Q ERDVPEY+ V+H M F+ Sbjct: 121 ITVNGRKVNIPSYIVRDEDVIEVREKSKHLAIVLDAAQSGERDVPEYMEVDHRQMKGRFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 181 RAP-KLSDVPYPVQMEPNLVIEFYSR 205 >gi|288959195|ref|YP_003449536.1| small subunit ribosomal protein S4 [Azospirillum sp. B510] gi|288911503|dbj|BAI72992.1| small subunit ribosomal protein S4 [Azospirillum sp. B510] Length = 204 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/206 (63%), Positives = 157/206 (76%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+ SK+KIDRR+G NLWGR KSP+N R YGPG HGQRRK KPS +GLQL AKQK+K Sbjct: 1 MSKRQESKYKIDRRLGVNLWGRAKSPLNKREYGPGQHGQRRK-KPSDYGLQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR I+ EA R +GDT NLI LE RLD +VYR KF PT FAARQ +NH H Sbjct: 60 YYGNIGEKQFRRIYAEAVRRKGDTGENLIGLLERRLDAVVYRMKFAPTPFAARQLINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR +NI S R K+ D +EV+ KSKQ+A VLEA+ ERD+P+Y+ V+ + FV Sbjct: 120 ILVNGRRLNIASARIKDNDTVEVRAKSKQMALVLEAAASGERDIPDYLEVDSSALKGRFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 180 RAP-LLADVPYPVQMEPNLVIEFYSR 204 >gi|114798436|ref|YP_760657.1| 30S ribosomal protein S4 [Hyphomonas neptunium ATCC 15444] gi|123323195|sp|Q0C0T6|RS4_HYPNA RecName: Full=30S ribosomal protein S4 gi|114738610|gb|ABI76735.1| ribosomal protein S4 [Hyphomonas neptunium ATCC 15444] Length = 205 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/205 (62%), Positives = 161/205 (78%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+R S+K+KIDRR+GEN+WGR KSP N R+Y PG HGQ R++K S FG+QL AKQK+K Sbjct: 1 MSRRHSAKYKIDRRVGENIWGRAKSPFNKRNYKPGQHGQNRRNKVSDFGMQLMAKQKLKA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F + EA R +G+++ NLI LESRLD +VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGDITEKQFAKTYVEAARMKGNSAENLIGLLESRLDAVVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V+VNGR NIGS R K GDV++V++KS+ LA VLEA ERD+PEY+ V+ M AT+ Sbjct: 121 VMVNGRRCNIGSARLKPGDVVQVREKSRNLALVLEALGSPERDIPEYVEVDPKAMTATYK 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P +L DVPYPV M+P VVEFYS Sbjct: 181 RVP-ALADVPYPVKMEPAQVVEFYS 204 >gi|302384228|ref|YP_003820051.1| ribosomal protein S4 [Brevundimonas subvibrioides ATCC 15264] gi|302194856|gb|ADL02428.1| ribosomal protein S4 [Brevundimonas subvibrioides ATCC 15264] Length = 205 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/205 (63%), Positives = 157/205 (76%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDR +GENLWGR KSPVN RSYGPG HGQRRKSK S FGLQL+AKQK+K Sbjct: 1 MSKRHSAKYKIDRAMGENLWGRAKSPVNKRSYGPGQHGQRRKSKVSDFGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +++EK+FR + EA R +G+TS LI LE+RLD VYRAKFVPT +AARQFVNH H Sbjct: 61 YYANLTEKQFRKTYDEAARRKGNTSETLIGLLEARLDATVYRAKFVPTPWAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDV+EVK+KS+ +A VLEA Q ERD+P+Y+ + FV Sbjct: 121 VTVNGKKVNIASYTLKPGDVVEVKEKSRNMALVLEAQQSGERDIPDYLELGDRGFSVRFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P L DVP+ V M+PNLVVE+YS Sbjct: 181 RFP-ELADVPFAVKMEPNLVVEYYS 204 >gi|296283999|ref|ZP_06861997.1| 30S ribosomal protein S4 [Citromicrobium bathyomarinum JL354] Length = 204 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/206 (62%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ ++EA R +GDT NLI LE RLD +VYRAKF PTIFAARQ VNH H Sbjct: 61 YYGDVTEKQFKRTYQEAARIKGDTGQNLIGLLEQRLDMVVYRAKFAPTIFAARQLVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R GDVI + K+K +A V+EA L ERD+P+Y++ + + V TF Sbjct: 121 ITVNGGKCNIPSRRVVVGDVIGLGAKAKDMALVIEAQSLPERDIPDYVAPDGTDKV-TFT 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNL+VEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLIVEFYSR 204 >gi|296532411|ref|ZP_06895138.1| 30S ribosomal protein S4 [Roseomonas cervicalis ATCC 49957] gi|296267254|gb|EFH13152.1| 30S ribosomal protein S4 [Roseomonas cervicalis ATCC 49957] Length = 205 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK+KI+RR+G NLWGR KSPV R YGPG HGQRRK KP+ FG+QL AKQK+K Sbjct: 1 MTKRAESKYKINRRLGVNLWGRAKSPVAKREYGPGQHGQRRKQKPTDFGVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR ++EA R +GDTS NLI LE RLD +VYR K T FAARQFVNH H Sbjct: 61 YYGNIGEKQFRKYYEEAVRRKGDTSENLIELLERRLDAVVYRLKLAVTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY ++ DVIEVK+KSKQL +VL+A+Q ER+VPEY+ ++H M F+ Sbjct: 121 ITVNGKRVNIPSYLVRDNDVIEVKEKSKQLVAVLDAAQSGEREVPEYLEIDHRQMKGRFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 181 RAP-KLSDVPYPVQMEPNLVIEFYSR 205 >gi|294084244|ref|YP_003551002.1| 30S ribosomal protein S4:RNA-binding S4:30S ribosomal protein S4, bacterial and organelle form [Candidatus Puniceispirillum marinum IMCC1322] gi|292663817|gb|ADE38918.1| Ribosomal protein S4:RNA-binding S4:Ribosomal protein S4, bacterial and organelle form [Candidatus Puniceispirillum marinum IMCC1322] Length = 208 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 126/204 (61%), Positives = 157/204 (76%), Gaps = 2/204 (0%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 KR S+KHKIDRR+G NLWGRPKSPVN R YGPG HGQRRK KP+ FG+QL AKQK+K YY Sbjct: 7 KRHSAKHKIDRRLGVNLWGRPKSPVNAREYGPGQHGQRRK-KPTDFGVQLMAKQKLKGYY 65 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G+I EK+F+ ++ A R +GDT NLI LE RLD I+YR+K VPT+FAARQ +NH H++ Sbjct: 66 GNIGEKQFKKYYQAAARGKGDTGQNLIGILECRLDAILYRSKMVPTVFAARQIINHGHIM 125 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 +NG+ NI S K GD I +K+K+K + +VL+A ERDVPEY+ VNHD A F+RI Sbjct: 126 LNGKRCNIASVMLKPGDEIALKEKAKTIPAVLDAIASVERDVPEYVDVNHDKFTAKFIRI 185 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P +L +VPYPV M+PNLVVE+YSR Sbjct: 186 P-TLDEVPYPVQMEPNLVVEYYSR 208 >gi|148554062|ref|YP_001261644.1| 30S ribosomal protein S4 [Sphingomonas wittichii RW1] gi|172048096|sp|A5V5E0|RS4_SPHWW RecName: Full=30S ribosomal protein S4 gi|148499252|gb|ABQ67506.1| SSU ribosomal protein S4P [Sphingomonas wittichii RW1] Length = 204 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QL+AKQK+K Sbjct: 1 MSKRTSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ + EA R +GDTS NLI LE RLD +VYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFKRNYTEASRMKGDTSQNLIGLLERRLDAVVYRAKFAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S + K GD I + K++++A VLEA L+ERDVPEYI+ + V TFV Sbjct: 121 IRVNGVKCNIASRQVKPGDEISLGSKAQEMALVLEAQGLSERDVPEYIAQDGGAKV-TFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|149184798|ref|ZP_01863116.1| 30S ribosomal protein S4 [Erythrobacter sp. SD-21] gi|148832118|gb|EDL50551.1| 30S ribosomal protein S4 [Erythrobacter sp. SD-21] Length = 204 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 126/206 (61%), Positives = 162/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKSKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ +KEA +GDT NLI LE RLD +VYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFKRTYKEASAMKGDTGQNLIGLLEQRLDMVVYRAKFAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG NI S R + GDV+ + K+K++A V+EA L ER++P+Y++ + ++ V T+ Sbjct: 121 IFLNGVKTNIASARVRVGDVVSLGSKAKEMALVIEAQSLPEREIPDYVAPDGNDKV-TYN 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLVVEFYSR 204 >gi|56552262|ref|YP_163101.1| 30S ribosomal protein S4 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761673|ref|ZP_04759760.1| RNA-binding S4 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260754038|ref|YP_003226931.1| 30S ribosomal protein S4 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|7388203|sp|Q9Z5U7|RS4_ZYMMO RecName: Full=30S ribosomal protein S4 gi|4378846|gb|AAD19714.1| 30S ribosomal protein S4 [Zymomonas mobilis subsp. mobilis ZM4] gi|56543836|gb|AAV89990.1| RNA-binding S4 domain protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241373981|gb|EER63514.1| RNA-binding S4 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553401|gb|ACV76347.1| ribosomal protein S4 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 204 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 132/206 (64%), Positives = 160/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRR+SK S +GLQL+AKQK+K Sbjct: 1 MSKRHSSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRRSKISDYGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR + +A + +GDTS NLI LE RLD IVYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFRRSYDDASKLKGDTSQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R GD I + K++++A VLEA LAERD+P+Y+ + N TFV Sbjct: 121 IRVNGVKCNIASRRVNPGDEISLGSKAQEMALVLEAQSLAERDIPDYV-LPDGNTKVTFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RIP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|87200259|ref|YP_497516.1| 30S ribosomal protein S4 [Novosphingobium aromaticivorans DSM 12444] gi|123488982|sp|Q2G641|RS4_NOVAD RecName: Full=30S ribosomal protein S4 gi|87135940|gb|ABD26682.1| SSU ribosomal protein S4P [Novosphingobium aromaticivorans DSM 12444] Length = 203 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 126/206 (61%), Positives = 163/206 (79%), Gaps = 3/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR++SK+KIDRR+GEN+WGRPKS VN RSYGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRKASKYKIDRRLGENIWGRPKSSVNRRSYGPGQHGQRRKSKVSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ ++EA + +GDT NLI LE RLD +VYRAKF PTIF+ARQ V+H H Sbjct: 61 YYGDVTEKQFKRTYQEASKMKGDTGQNLIGLLEQRLDMVVYRAKFAPTIFSARQVVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R + GDV+ + +K+K++A + EA L ER+VP+Y++ + D + TF Sbjct: 121 IYVNGVKCNIASRRVRPGDVVSLGKKAKEMALIAEAQALPEREVPDYVAADGDKV--TFT 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 179 RVP-TLDEVPYPVKMEPNLVVEFYSR 203 >gi|103486278|ref|YP_615839.1| 30S ribosomal protein S4 [Sphingopyxis alaskensis RB2256] gi|123380035|sp|Q1GV16|RS4_SPHAL RecName: Full=30S ribosomal protein S4 gi|98976355|gb|ABF52506.1| SSU ribosomal protein S4P [Sphingopyxis alaskensis RB2256] Length = 203 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 160/206 (77%), Gaps = 3/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRQSAKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTIF+ARQ V+H H Sbjct: 61 YYGDITEKQFKKNYIEASRMKGDTGQNLIGLLERRLDAVVYRAKFTPTIFSARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI S K GD I + +K++++A V EA L ERD+PEY++V D AT+V Sbjct: 121 VYVNGVKCNIASRLVKPGDEITLGKKAQEMALVAEAQSLPERDLPEYLAV--DGTKATYV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 179 RVP-TLDEVPYPVKMEPNLVVEFYSR 203 >gi|209964302|ref|YP_002297217.1| 30S ribosomal protein S4 [Rhodospirillum centenum SW] gi|226699112|sp|B6ISG8|RS4_RHOCS RecName: Full=30S ribosomal protein S4 gi|209957768|gb|ACI98404.1| ribosomal protein S4 [Rhodospirillum centenum SW] Length = 204 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/206 (62%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+ +K+KIDRR+G NLWGR KSPVN R YGPG HGQRRK KPS +G+QL AKQK+K Sbjct: 1 MSKRQEAKYKIDRRLGVNLWGRAKSPVNKREYGPGQHGQRRK-KPSDYGMQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR +++EA R +GD+ NLI LE RLD +VYR KF T FA+RQ +NH H Sbjct: 60 YYGNIGEKQFRRLYQEAVRRKGDSGENLIQLLERRLDAVVYRMKFAATPFASRQLINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR VNI SY K+GD IEV+ K+KQ A V+EA+ ERD+P+Y+SV+ + T+V Sbjct: 120 ILVNGRRVNIPSYTVKDGDSIEVRSKAKQFAFVMEAAASGERDIPDYLSVDSQALKGTYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 180 RAP-GLADVPYPVQMEPNLVIEFYSR 204 >gi|297172490|gb|ADI23462.1| hypothetical protein [uncultured nuHF1 cluster bacterium HF0770_35I22] Length = 204 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 127/206 (61%), Positives = 163/206 (79%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +K+KI+RR+G NLWGRPKSPVN R Y PG GQRR+ KPS +GLQL AKQK+K Sbjct: 1 MSKRIKAKYKINRRLGVNLWGRPKSPVNIREYPPGEQGQRRR-KPSDYGLQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR ++EA + RGDTS NL+ LE RLD+++YR KFVPT+F+ARQFVNH H Sbjct: 60 YYGNITEKQFRKYYQEATKRRGDTSENLVGILERRLDSVIYRMKFVPTVFSARQFVNHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNGR+VNI SY K D+I V++KS+Q+ VL A + ERDVPEY++VN M TF+ Sbjct: 120 IMVNGRTVNIPSYVVKVDDIISVREKSRQMPLVLLAMESPERDVPEYLTVNPSKMEGTFL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P SL ++PYPV M+PNLV+EFYSR Sbjct: 180 HVP-SLAEIPYPVQMEPNLVIEFYSR 204 >gi|83311227|ref|YP_421491.1| 30S ribosomal protein S4 [Magnetospirillum magneticum AMB-1] gi|123542029|sp|Q2W5E3|RS4_MAGMM RecName: Full=30S ribosomal protein S4 gi|82946068|dbj|BAE50932.1| Ribosomal protein S4 and related protein [Magnetospirillum magneticum AMB-1] Length = 205 Score = 267 bits (683), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 136/207 (65%), Positives = 157/207 (75%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN-TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MSKR +K+KI+RR+G NLWGR KSP+N + PG HGQRRK KPS FG QL AKQK+K Sbjct: 1 MSKRIEAKYKINRRLGANLWGRSKSPLNRGKENPPGQHGQRRK-KPSDFGTQLMAKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD +VYR KF PT FAARQ VNH Sbjct: 60 GYYGNISEKQFRRLYDEAVRRRGDTSENLIGLLECRLDAVVYRLKFAPTPFAARQLVNHC 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LVNG+ VNI SYR EGDVI VK KSK +A +LEA+Q ERDVP+Y+ V+H M F Sbjct: 120 HILVNGKRVNIPSYRVNEGDVISVKTKSKDMALILEAAQSGERDVPDYMEVDHKEMKGKF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VRIP L DVPY V M+PNLVVEFYSR Sbjct: 180 VRIP-KLGDVPYAVQMEPNLVVEFYSR 205 >gi|254292960|ref|YP_003058983.1| 30S ribosomal protein S4 [Hirschia baltica ATCC 49814] gi|254041491|gb|ACT58286.1| ribosomal protein S4 [Hirschia baltica ATCC 49814] Length = 205 Score = 266 bits (681), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 128/205 (62%), Positives = 156/205 (76%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+R S+K+K+DRR+GEN+WGR KSP+N R PG HG RK K S FGLQL AKQK+K Sbjct: 1 MSRRSSAKYKLDRRVGENVWGRAKSPINKRQSRPGQHGAARKGKLSDFGLQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD++EK+FR + EA R +G+T+ NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVTEKQFRRTYDEAARRKGNTAENLIGLLESRLDALVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG N+ SYR + GDV++VK KS+ +A VLEA AERD+P+YI V M ATFV Sbjct: 121 VTVNGVKANVPSYRLRPGDVVQVKDKSRSMALVLEALGSAERDIPDYIEVEPKAMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L DVPY M+PNLVVE+YS Sbjct: 181 RLP-ELADVPYACRMEPNLVVEYYS 204 >gi|46205031|ref|ZP_00049140.2| COG0522: Ribosomal protein S4 and related proteins [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 130/192 (67%), Positives = 150/192 (78%), Gaps = 1/192 (0%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K YYG+I+EK+FR + Sbjct: 1 MGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKGYYGNITEKQFRRYY 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 EA R RGD+ NLI LE RLD +VYRAKFV T FAARQFVNH HV VNGR VNI S++ Sbjct: 61 AEAIRLRGDSGENLIGLLERRLDAVVYRAKFVATPFAARQFVNHGHVKVNGRRVNIPSFQ 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K GDVIEVK+ S+QL V+ ASQLAERDVP+YI V+H M A RIP L +VPYPV Sbjct: 121 VKAGDVIEVKEASRQLEIVVVASQLAERDVPDYIEVDHQKMSARVTRIP-GLSEVPYPVQ 179 Query: 195 MQPNLVVEFYSR 206 M+PNLV+EFYSR Sbjct: 180 MEPNLVIEFYSR 191 >gi|330814238|ref|YP_004358477.1| SSU ribosomal protein S4p (S9e) [Candidatus Pelagibacter sp. IMCC9063] gi|327487333|gb|AEA81738.1| SSU ribosomal protein S4p (S9e) [Candidatus Pelagibacter sp. IMCC9063] Length = 206 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 118/207 (57%), Positives = 162/207 (78%), Gaps = 2/207 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 M+KR +KHK+DRR+G NLWGRPKSP NTR++GPG HGQ R + KPS + +QL+AKQK+K Sbjct: 1 MTKRIQAKHKVDRRLGVNLWGRPKSPFNTRAFGPGQHGQTRARGKPSDYKIQLQAKQKLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+++E++FR++F+EA+R RG+T NL+ LESRLD +VYRAKF T+F ARQ +NH Sbjct: 61 GYYGNLNERQFRNVFQEAERVRGNTGENLVGILESRLDAVVYRAKFALTVFQARQIINHG 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ VN+GSY KE D IEV+ SKQL ++L + ER+VPEY+ V+H + A + Sbjct: 121 HIKVNGKKVNVGSYSLKENDEIEVRDSSKQLTTILSSVASKEREVPEYVVVDHKQLTAKY 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++++PYP IM+PNLVVE+YSR Sbjct: 181 TRVP-KMEEIPYPAIMEPNLVVEYYSR 206 >gi|307292704|ref|ZP_07572550.1| ribosomal protein S4 [Sphingobium chlorophenolicum L-1] gi|306880770|gb|EFN11986.1| ribosomal protein S4 [Sphingobium chlorophenolicum L-1] Length = 204 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 127/206 (61%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTIF+ARQ V+H H Sbjct: 61 YYGDITEKQFKKSYIEAARMKGDTGQNLIGLLERRLDAVVYRAKFAPTIFSARQIVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S K GD I + +K++++A VLEA L ERD+P+Y+S + + T+V Sbjct: 121 IYVNGVKCNIASRLVKPGDEITLGKKAQEMALVLEAQSLPERDIPDYVSPDGAAKI-TYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P SL +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-SLDEVPYPVKMEPNLVVEFYSR 204 >gi|71083832|ref|YP_266552.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1062] gi|91763131|ref|ZP_01265095.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1002] gi|90101703|sp|Q4FLJ0|RS4_PELUB RecName: Full=30S ribosomal protein S4 gi|71062945|gb|AAZ21948.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1062] gi|91717544|gb|EAS84195.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1002] Length = 205 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 125/206 (60%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+ NLWGRPKSP N R YGPG HGQ RK KPS +G+QL+AKQK+K Sbjct: 1 MTKRISAKHKIDRRLKINLWGRPKSPFNKRDYGPGQHGQGRKGKPSDYGIQLQAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+E++FR+I+K+A +GDT NLI LE RLD++VYRA+F T+F+ARQ +NH H Sbjct: 61 YYGNINERQFRNIYKKATMLKGDTGENLIGLLERRLDSVVYRARFSTTVFSARQLINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSY KE D+IE++ KSKQLA + A ER+ PEYI+++ N TFV Sbjct: 121 VRVNGKKVNIGSYVVKEEDIIEIRDKSKQLAIIDIALASKERETPEYINLDEKNKKVTFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPYPVIM+PNLV+E+YSR Sbjct: 181 RTP-KFDEVPYPVIMEPNLVIEYYSR 205 >gi|297717888|gb|ADI50087.1| SSU ribosomal protein S4p [Candidatus Odyssella thessalonicensis L13] Length = 204 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/206 (62%), Positives = 162/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+G NLWGRPKSPVN+RSYGPG HGQ+R SKPS +GLQLRAKQK+K Sbjct: 1 MTKRINAKYKIDRRLGVNLWGRPKSPVNSRSYGPGQHGQQR-SKPSDYGLQLRAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISE++FR +++EA R RGDTS NLI LE RLD +VYR KFV T FAARQ VNH H Sbjct: 60 YYGNISERQFRRLYQEAIRRRGDTSENLIELLERRLDAVVYRMKFVATPFAARQLVNHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI S++ K+GD I + K K+ +V+ ++Q ERDVPEY++V+H M ++ Sbjct: 120 VAVNGKRVNIPSFQLKDGDEISLIGKIKENVNVIASTQSNERDVPEYMTVDHKKMEGKYI 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPYPV M+PNLV+EFYSR Sbjct: 180 RGP-KFTEVPYPVHMEPNLVIEFYSR 204 >gi|94497376|ref|ZP_01303947.1| 30S ribosomal protein S4 [Sphingomonas sp. SKA58] gi|94423239|gb|EAT08269.1| 30S ribosomal protein S4 [Sphingomonas sp. SKA58] Length = 204 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/206 (61%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTI++ARQ V+H H Sbjct: 61 YYGDITEKQFKKNYVEAARMKGDTGQNLIGLLERRLDALVYRAKFAPTIWSARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S K GD I + +K++++A VLEA L ERD+P+Y+S + V T+V Sbjct: 121 IYVNGVKCNIASRLVKPGDEITLGKKAQEMALVLEAQNLPERDIPDYVSPDGAAKV-TYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|254456438|ref|ZP_05069867.1| ribosomal protein S4 [Candidatus Pelagibacter sp. HTCC7211] gi|207083440|gb|EDZ60866.1| ribosomal protein S4 [Candidatus Pelagibacter sp. HTCC7211] Length = 205 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 122/206 (59%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +SKHK+DRR+ NLWGRPKSP NTR+YGPG HGQ R+ KPS +G+QL+AKQK+K Sbjct: 1 MTKRLNSKHKVDRRLKVNLWGRPKSPFNTRAYGPGQHGQSRQGKPSDYGIQLQAKQKLKA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+E++FR+I+K+A +GDT NLI LE RLD ++YRAKF TIF+ARQ +NH H Sbjct: 61 YYGNINERQFRNIYKKAVMLKGDTGENLIGLLERRLDAVIYRAKFATTIFSARQLINHNH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSY KE D IE++ KSKQLA + A ER+ PEYI ++ N FV Sbjct: 121 VRVNGKKVNIGSYLVKEEDSIEIRDKSKQLAIIDIALANKEREAPEYIQMDEKNKKFKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++VPYP++M+PNLV+E+YSR Sbjct: 181 RTP-KFEEVPYPIVMEPNLVIEYYSR 205 >gi|294012169|ref|YP_003545629.1| ribosomal protein S4 [Sphingobium japonicum UT26S] gi|292675499|dbj|BAI97017.1| ribosomal protein S4 [Sphingobium japonicum UT26S] Length = 204 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/206 (60%), Positives = 158/206 (76%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTI+++RQ V+H H Sbjct: 61 YYGDITEKQFKKNYTEAARMKGDTGQNLIGLLERRLDAVVYRAKFAPTIWSSRQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S K GD I + +K++++A VLEA L ERD+P+Y+ + V T+V Sbjct: 121 IYVNGVKCNIASRLVKPGDEITLGKKAQEMALVLEAQGLPERDIPDYVVADGAAKV-TYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|332185474|ref|ZP_08387222.1| ribosomal protein S4 [Sphingomonas sp. S17] gi|332014452|gb|EGI56509.1| ribosomal protein S4 [Sphingomonas sp. S17] Length = 190 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 121/192 (63%), Positives = 149/192 (77%), Gaps = 2/192 (1%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K YYGD++EK+F++ + Sbjct: 1 MGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDFGLQLRAKQKLKGYYGDVTEKQFKACY 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 +EA R +GDTS NLI LE RLD IVYRAKF PTIFAARQ V+H H+ VNG N+ S R Sbjct: 61 QEAARMKGDTSQNLIGLLEQRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNVASRR 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 C GD I + K+ ++A VLEA QLAER+VP+Y++ + + VA R+P +L +VPYPV Sbjct: 121 CFVGDEISLGSKAAEMALVLEAQQLAEREVPDYVTADGNTKVA-LTRVP-TLDEVPYPVK 178 Query: 195 MQPNLVVEFYSR 206 M+PNLVVEFYSR Sbjct: 179 MEPNLVVEFYSR 190 >gi|119713262|gb|ABL97328.1| ribosomal protein S4 [uncultured marine bacterium HF10_12C08] Length = 205 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/206 (58%), Positives = 155/206 (75%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR + KHKIDRR+ NLWGRPKSP N R Y PG HGQ+ K S +G+QL AKQK+K Sbjct: 1 MTKRVAQKHKIDRRLSVNLWGRPKSPFNLRKYRPGQHGQKHTGKLSDYGVQLNAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++E++FR+ +KEA R +GD+ NLI+ LE RLDTIVYR+KFVPT+FAARQF+NH H Sbjct: 61 YYGNLNERQFRNCYKEAIRQKGDSGENLIAILERRLDTIVYRSKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI S KEGDV+EVK KSK++A V+E+ + ERD+P YI+V+ +TFV Sbjct: 121 VKVNGKRVNIASCLLKEGDVVEVKDKSKEMALVVESMKSQERDIPGYITVDEKKCSSTFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPY M P LV+E+YSR Sbjct: 181 RTP-QFAEVPYATQMDPKLVIEYYSR 205 >gi|289608314|emb|CBI60616.1| unnamed protein product [Sordaria macrospora] Length = 190 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/192 (61%), Positives = 144/192 (75%), Gaps = 3/192 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ ++EA R +GDT NLI LE RLD IVYRAKF PT++AARQ V+H H Sbjct: 61 YYGDVTEKQFKRTYEEASRMKGDTGQNLIGLLEQRLDMIVYRAKFAPTVWAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI S RC GD I + K++++A VLEA LAERD+PEYI D TF Sbjct: 121 VRVNGVKCNIASRRCYVGDEISLGTKAQEMALVLEAQTLAERDIPEYIGA--DGTKVTFN 178 Query: 181 RIPSSLKDVPYP 192 R+P +L +VPYP Sbjct: 179 RVP-TLDEVPYP 189 >gi|144900824|emb|CAM77688.1| 30S ribosomal protein S4 [Magnetospirillum gryphiswaldense MSR-1] Length = 205 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 124/207 (59%), Positives = 152/207 (73%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M+KR +K KI+RR+G NLWGR KSP+ + PG HG RRK KPS FG QL AKQK+K Sbjct: 1 MTKRIEAKFKINRRLGVNLWGRGKSPLARGKETPPGQHGARRK-KPSDFGTQLMAKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD +VYR K + F ARQ +NH Sbjct: 60 GYYGNISEKQFRKLYDEAVRRRGDTSENLIGLLERRLDAVVYRMKMAVSPFQARQVINHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +NI SY+ K+GD+I VKQKSK LA +LEA+Q ERDVP+Y+ V+H M TF Sbjct: 120 HIHVNGKRLNIASYQVKDGDIITVKQKSKDLAIILEAAQSPERDVPDYLEVDHKEMKGTF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R P L DVPYP M+PNLV+EFYSR Sbjct: 180 IRAP-KLSDVPYPCQMEPNLVIEFYSR 205 >gi|119713705|gb|ABL97755.1| ribosomal protein S4 [uncultured marine bacterium EB0_41B09] Length = 191 Score = 240 bits (613), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 112/192 (58%), Positives = 145/192 (75%), Gaps = 1/192 (0%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +GEN+WGR P NTR+YGPG HG + + S +G+QLR KQK+K YYG+I EK+FR+IF Sbjct: 1 MGENIWGRENCPTNTRTYGPGQHGPKGVRRRSDYGVQLREKQKLKGYYGNIGEKQFRNIF 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 KEA S+GDTS NL+ LESRLD IVYR+ FVPT+FAARQF+NH+HV VNG VNI SY+ Sbjct: 61 KEAAASKGDTSENLLVLLESRLDAIVYRSNFVPTVFAARQFINHKHVKVNGSVVNIASYK 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 CK GD I+V +KS+ V+++ Q ERD+PEYI+++ AT++R PSS ++PYP + Sbjct: 121 CKPGDEIQVNEKSRSFPFVIDSVQKLERDLPEYINLDVKEFKATYIRYPSS-DEIPYPTM 179 Query: 195 MQPNLVVEFYSR 206 M P VVEFYSR Sbjct: 180 MSPGSVVEFYSR 191 >gi|148284289|ref|YP_001248379.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Boryong] gi|172047212|sp|A5CCV1|RS4_ORITB RecName: Full=30S ribosomal protein S4 gi|146739728|emb|CAM79558.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Boryong] Length = 207 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 139/206 (67%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 M+K SK+K+ RR+G ++WG K +N ++Y PG G SKPS + L AKQ++K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEKDAINNKNYKPGQQGNSSSISKPSDYSKHLIAKQRLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ISEK+FR+ FK A + G+T+ NL+ LE RLD +VYR PTIFAARQ V+H+ Sbjct: 61 SHYGRISEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQLVSHK 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +NI SYR K GD IE+ +++KQ+ V+ A R +PEY++ + + + F Sbjct: 121 HIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAISKKARRIPEYLAFDDEKFIGNF 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +R+PSS+ +VPYP Q NLVVEFYS Sbjct: 181 IRMPSSISEVPYPFDPQINLVVEFYS 206 >gi|189184338|ref|YP_001938123.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Ikeda] gi|226699098|sp|B3CU42|RS4_ORITI RecName: Full=30S ribosomal protein S4 gi|189181109|dbj|BAG40889.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Ikeda] Length = 207 Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 M+K SK+K+ RR+G ++WG K +N ++Y PG G SKPS + L AKQ++K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEKDAINNKNYKPGQQGNSSSVSKPSDYSKHLVAKQRLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I EK+FR+ FK A + G+T+ NL+ LE RLD +VYR PTIFAARQ V+H+ Sbjct: 61 SHYGRIPEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQLVSHK 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +NI SYR K GD IE+ +++KQ+ V+ A R +PEY++ + + + F Sbjct: 121 HIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAISKKARRIPEYLAFDDEKFIGNF 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +R+PSS+ +VPYP Q NLVVEFYS Sbjct: 181 IRMPSSISEVPYPFDPQINLVVEFYS 206 >gi|241518581|ref|YP_002979209.1| RNA-binding S4 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862994|gb|ACS60658.1| RNA-binding S4 domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 146 Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 98/138 (71%), Positives = 113/138 (81%), Gaps = 1/138 (0%) Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +FR IF EA+R RGDTS NLI+ LESRLD IVYRAKF PT FAARQF+NH HV+VNG V Sbjct: 10 QFRRIFNEANRLRGDTSENLIALLESRLDAIVYRAKFAPTPFAARQFINHGHVIVNGMRV 69 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 NI SYRCK GDVIEV+ KSKQLA VLE+ LAERDVP+YI+ +H+ M ATF R+P +L D Sbjct: 70 NISSYRCKAGDVIEVRPKSKQLAVVLESVGLAERDVPDYIAADHNKMTATFSRVP-ALAD 128 Query: 189 VPYPVIMQPNLVVEFYSR 206 VP+ VIM+P LVVEFYSR Sbjct: 129 VPFAVIMEPQLVVEFYSR 146 >gi|239947523|ref|ZP_04699276.1| ribosomal protein S4 [Rickettsia endosymbiont of Ixodes scapularis] gi|239921799|gb|EER21823.1| ribosomal protein S4 [Rickettsia endosymbiont of Ixodes scapularis] Length = 205 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFVLAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDVIEVK+ KQ++ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVIEVKESVKQISLIQESVSKQGQTTPGYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-ALSDVPYPFEAEVHLVIELYSR 205 >gi|15604213|ref|NP_220728.1| 30S ribosomal protein S4 [Rickettsia prowazekii str. Madrid E] gi|6226104|sp|Q9ZDI3|RS4_RICPR RecName: Full=30S ribosomal protein S4 gi|3860905|emb|CAA14805.1| 30S RIBOSOMAL PROTEIN S4 (rpsD) [Rickettsia prowazekii] gi|292571953|gb|ADE29868.1| 30S ribosomal protein S4 [Rickettsia prowazekii Rp22] Length = 205 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ++EK+FR+IF A R +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 YYGRVTEKQFRNIFALAQRMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGD+IE+K+ +Q+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDIIEIKESIQQIPLIQESISKQGQTTPGYLSFDIPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-ALSDVPYPFEAEVHLVIELYSR 205 >gi|162022123|ref|YP_246565.2| 30S ribosomal protein S4 [Rickettsia felis URRWXCal2] gi|90101714|sp|Q4UM23|RS4_RICFE RecName: Full=30S ribosomal protein S4 Length = 205 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDVIEVK+ KQ+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVIEVKESVKQIPLIQESVSKQAQTTPGYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-ALSDVPYPFEAEVHLVIELYSR 205 >gi|51473540|ref|YP_067297.1| 30S ribosomal protein S4 [Rickettsia typhi str. Wilmington] gi|61215500|sp|Q68X27|RS4_RICTY RecName: Full=30S ribosomal protein S4 gi|51459852|gb|AAU03815.1| 30S ribosomal protein S4 [Rickettsia typhi str. Wilmington] Length = 205 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ++EK+FR+ F A R +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 YYGRVTEKQFRNTFALAQRMQGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGD+IE+K+ +Q+ + E+ + P+Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDIIEIKESIQQIPLIQESIAKQGQTTPKYLSFDVSSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-ALSDVPYPFEAEVHLVIELYSR 205 >gi|157803917|ref|YP_001492466.1| 30S ribosomal protein S4 [Rickettsia canadensis str. McKiel] gi|172045657|sp|A8EZ98|RS4_RICCK RecName: Full=30S ribosomal protein S4 gi|157785180|gb|ABV73681.1| 30S ribosomal protein S4 [Rickettsia canadensis str. McKiel] Length = 205 Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K N R+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNIRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF+ A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFELAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDV+EVK+ KQ+A + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVVEVKESIKQIALIQESILKQGQTTPNYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-NLSDVPYPFEAEVHLVIELYSR 205 >gi|73666827|ref|YP_302843.1| 30S ribosomal protein S4 [Ehrlichia canis str. Jake] gi|123615083|sp|Q3YSR0|RS4_EHRCJ RecName: Full=30S ribosomal protein S4 gi|72393968|gb|AAZ68245.1| SSU ribosomal protein S4P [Ehrlichia canis str. Jake] Length = 202 Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 134/199 (67%), Gaps = 2/199 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G +LWGR K P NTR+Y PG HG KPS FG Q A +K K YY IS Sbjct: 6 KYRASRRLGVSLWGRSKDPFNTRNYPPGQHGNMGYKKPSDFGKQFAAHKKFKFYYA-ISS 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R++F +A + RGDT N + LESRL +I+Y + VPTIF+ARQ ++H+HVLVNG++ Sbjct: 65 KQMRNVFLKAYKKRGDTGDNFVGLLESRLSSILYNSGLVPTIFSARQLISHKHVLVNGKT 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI SY K GDV+ +K+K+K L +V+ A Q E VP+Y+ V+ ++R+P Sbjct: 125 VNISSYIVKVGDVVTLKEKAKNLPAVIAAIQSQEHKVPDYLEVDTQEKSVRYLRVPKYC- 183 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +VPYP M+ NLV+EFYSR Sbjct: 184 EVPYPATMEVNLVIEFYSR 202 >gi|241068491|ref|XP_002408449.1| 30S ribosomal protein S4, putative [Ixodes scapularis] gi|215492437|gb|EEC02078.1| 30S ribosomal protein S4, putative [Ixodes scapularis] Length = 205 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 135/200 (67%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 7 SKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 66 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 67 EKQFRNIFVLAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 126 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R KEGDVIEVK+ KQ++ + E+ + P Y+S + ++ ++R+P +L Sbjct: 127 KADIASIRLKEGDVIEVKESVKQISLIQESVSKQGQTTPGYLSFDVPSLTGKYLRVP-AL 185 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 186 SDVPYPFEAEVHLVIELYSR 205 >gi|67004474|gb|AAY61400.1| 30S ribosomal protein S4 [Rickettsia felis URRWXCal2] Length = 221 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 23 SKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 82 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 83 EKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 142 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R KEGDVIEVK+ KQ+ + E+ + P Y+S + ++ ++R+P +L Sbjct: 143 KADIASIRLKEGDVIEVKESVKQIPLIQESVSKQAQTTPGYLSFDVPSLTGKYLRVP-AL 201 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 202 SDVPYPFEAEVHLVIELYSR 221 >gi|68171571|ref|ZP_00544946.1| Ribosomal protein S4, bacterial and organelle form [Ehrlichia chaffeensis str. Sapulpa] gi|88657888|ref|YP_507703.1| 30S ribosomal protein S4 [Ehrlichia chaffeensis str. Arkansas] gi|123492898|sp|Q2GFT0|RS4_EHRCR RecName: Full=30S ribosomal protein S4 gi|67999012|gb|EAM85688.1| Ribosomal protein S4, bacterial and organelle form [Ehrlichia chaffeensis str. Sapulpa] gi|88599345|gb|ABD44814.1| ribosomal protein S4 [Ehrlichia chaffeensis str. Arkansas] Length = 202 Score = 199 bits (507), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 135/199 (67%), Gaps = 2/199 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K P NTR+Y PG HG KPS FG Q A +K K YY I+ Sbjct: 6 KYRASRRLGVNLWGRSKDPFNTRNYPPGQHGGMGYKKPSDFGKQFAAHKKFKFYYA-INS 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R+IF +A + RGDT N + LESRL +++Y + VPTIF+ARQ ++H+HVLVNG++ Sbjct: 65 KQMRNIFLKAYKKRGDTGDNFVGLLESRLSSVLYNSGLVPTIFSARQLISHKHVLVNGKT 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI SY K GDV+ +K+K+K L +V+ A Q E+ VP+Y+ V+ ++R+P Sbjct: 125 VNISSYVVKVGDVVTLKEKAKNLPAVVFAVQSQEQKVPDYLEVDTQEKSIRYLRVPKYC- 183 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +VPYP M+ NLV+EFYSR Sbjct: 184 EVPYPATMEVNLVIEFYSR 202 >gi|15892391|ref|NP_360105.1| 30S ribosomal protein S4 [Rickettsia conorii str. Malish 7] gi|157828341|ref|YP_001494583.1| 30S ribosomal protein S4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933050|ref|YP_001649839.1| 30S ribosomal protein S4 [Rickettsia rickettsii str. Iowa] gi|229586609|ref|YP_002845110.1| 30S ribosomal protein S4 [Rickettsia africae ESF-5] gi|238651051|ref|YP_002916908.1| 30S ribosomal protein S4 [Rickettsia peacockii str. Rustic] gi|26399443|sp|Q92IF2|RS4_RICCN RecName: Full=30S ribosomal protein S4 gi|172045661|sp|A8F1B5|RS4_RICM5 RecName: Full=30S ribosomal protein S4 gi|172047812|sp|A8GRQ0|RS4_RICRS RecName: Full=30S ribosomal protein S4 gi|189045394|sp|B0BX57|RS4_RICRO RecName: Full=30S ribosomal protein S4 gi|259495290|sp|C3PN57|RS4_RICAE RecName: Full=30S ribosomal protein S4 gi|259495291|sp|C4K2Q9|RS4_RICPU RecName: Full=30S ribosomal protein S4 gi|15619541|gb|AAL03006.1| 30S ribosomal protein S4 [Rickettsia conorii str. Malish 7] gi|157800822|gb|ABV76075.1| 30S ribosomal protein S4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908137|gb|ABY72433.1| SSU ribosomal protein S4P [Rickettsia rickettsii str. Iowa] gi|228021659|gb|ACP53367.1| 30S ribosomal protein S4 [Rickettsia africae ESF-5] gi|238625149|gb|ACR47855.1| 30S ribosomal protein S4 [Rickettsia peacockii str. Rustic] Length = 205 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R K GDVIEVK+ KQ+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQTTPGYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-ALSDVPYPFEAEVHLVIELYSR 205 >gi|23013991|ref|ZP_00053834.1| COG0522: Ribosomal protein S4 and related proteins [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 100/152 (65%), Positives = 116/152 (76%), Gaps = 2/152 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN-TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MSKR +K+KI+RR+G NLWGR KSP+N + PG HGQRRK KPS FG QL AKQK+K Sbjct: 1 MSKRIEAKYKINRRLGANLWGRSKSPLNRGKENPPGQHGQRRK-KPSDFGTQLMAKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD +VYR KF PT FAARQ VNH Sbjct: 60 GYYGNISEKQFRRLYDEAVRRRGDTSENLIGLLECRLDAVVYRLKFAPTPFAARQLVNHC 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 H+LVNG+ VNI SYR EGDV+ VK KSK +A Sbjct: 120 HILVNGKRVNIPSYRVNEGDVVSVKTKSKDMA 151 >gi|91205656|ref|YP_538011.1| 30S ribosomal protein S4 [Rickettsia bellii RML369-C] gi|157826887|ref|YP_001495951.1| 30S ribosomal protein S4 [Rickettsia bellii OSU 85-389] gi|122425523|sp|Q1RI92|RS4_RICBR RecName: Full=30S ribosomal protein S4 gi|172047819|sp|A8GVN7|RS4_RICB8 RecName: Full=30S ribosomal protein S4 gi|91069200|gb|ABE04922.1| 30S ribosomal protein S4 [Rickettsia bellii RML369-C] gi|157802191|gb|ABV78914.1| 30S ribosomal protein S4 [Rickettsia bellii OSU 85-389] Length = 205 Score = 197 bits (501), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 139/206 (67%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HG+ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGRNTMVKTSDYGLHLKAKQRIKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+EK+FR+IF A + +G+T N I LESRLD+IVYR PTIF++RQ ++H H Sbjct: 61 HYGRITEKQFRNIFGFAQKMKGNTGENFIGLLESRLDSIVYRMNIAPTIFSSRQLISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ +I S R KEGDVIE+K+ S+Q+ + E+ + P+Y+S + D++ ++ Sbjct: 121 IKVNGKKADIASMRLKEGDVIEIKEASRQMGIIQESVSKQGQTTPDYVSFDVDSLSGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++ DV YP + +LVVE YSR Sbjct: 181 RVP-TISDVRYPFTPEVHLVVELYSR 205 >gi|157964424|ref|YP_001499248.1| 30S ribosomal protein S4 [Rickettsia massiliae MTU5] gi|157844200|gb|ABV84701.1| 30S ribosomal protein S4 [Rickettsia massiliae MTU5] Length = 227 Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 29 SKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 88 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 89 EKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 148 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R K GDVIEVK+ KQ+ + E+ + P Y+S + ++ ++R+P +L Sbjct: 149 KADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQTTPGYLSFDVPSLTGKYLRVP-AL 207 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 208 SDVPYPFEAEVHLVIELYSR 227 >gi|88607037|ref|YP_505552.1| 30S ribosomal protein S4 [Anaplasma phagocytophilum HZ] gi|123494635|sp|Q2GJ99|RS4_ANAPZ RecName: Full=30S ribosomal protein S4 gi|88598100|gb|ABD43570.1| ribosomal protein S4 [Anaplasma phagocytophilum HZ] Length = 204 Score = 197 bits (500), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 99/198 (50%), Positives = 133/198 (67%), Gaps = 2/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K P NTR+Y PG HG K S FG Q A QK K YY +S Sbjct: 8 KYRASRRLGVNLWGRSKDPFNTRNYPPGQHGAMGYKKLSSFGRQFVAHQKFKCYY-VVSS 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ R++F +A R +GDT NL+ LESRL ++VY A VPT+F+ARQ V+H+HV VNGR Sbjct: 67 RQLRNVFLKAYRKKGDTGDNLVGALESRLASVVYSAGLVPTMFSARQLVSHKHVTVNGRV 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ K GD++EV++++ QL VL A Q ER VP+++ VN + + ++ +P Sbjct: 127 VNIPSFSVKPGDIVEVRKRASQLPMVLAAIQSQERRVPDHLDVNTEKLSVKYLAVP-KYS 185 Query: 188 DVPYPVIMQPNLVVEFYS 205 DVPYP M+ NLVVEFYS Sbjct: 186 DVPYPANMEVNLVVEFYS 203 >gi|157825598|ref|YP_001493318.1| 30S ribosomal protein S4 [Rickettsia akari str. Hartford] gi|172047793|sp|A8GN35|RS4_RICAH RecName: Full=30S ribosomal protein S4 gi|157799556|gb|ABV74810.1| 30S ribosomal protein S4 [Rickettsia akari str. Hartford] Length = 205 Score = 197 bits (500), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGQNAMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR++F A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNLFVLAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDVI +K+ KQ+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVIAIKESVKQIPLIQESVSKQGQTTPGYLSFDVHSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPYP + +LV+E YSR Sbjct: 181 RVP-ALSDVPYPFEAEVHLVIELYSR 205 >gi|34580606|ref|ZP_00142086.1| 30S ribosomal protein S4 [Rickettsia sibirica 246] gi|28261991|gb|EAA25495.1| 30S ribosomal protein S4 [Rickettsia sibirica 246] Length = 224 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 26 SKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 85 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 86 EKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 145 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R K GDVIEVK+ KQ+ + E+ + P Y+S + ++ ++R+P +L Sbjct: 146 KADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQTTPGYLSFDVPSLTGKYLRVP-AL 204 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 205 SDVPYPFEAEVHLVIELYSR 224 >gi|269959011|ref|YP_003328800.1| 30S ribosomal protein S4 [Anaplasma centrale str. Israel] gi|269848842|gb|ACZ49486.1| 30S ribosomal protein S4 [Anaplasma centrale str. Israel] Length = 222 Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 97/198 (48%), Positives = 131/198 (66%), Gaps = 2/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K P NTR+Y PG HG K S FG Q A QK K YY +S Sbjct: 26 KYRASRRLGVNLWGRSKDPFNTRNYPPGQHGSMGYKKLSSFGKQFAAHQKFKCYYA-MSS 84 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ R+ F A +GDT NL+ LESRL +VY A FVPTIF+ARQ V+H+HV VNG+ Sbjct: 85 RQLRNTFLRAYNRKGDTGDNLVGALESRLAVVVYSAGFVPTIFSARQLVSHKHVTVNGKV 144 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ K GDV+++++++ +L VL A Q ER VP+++ V+ + A ++R+P Sbjct: 145 VNIPSFSVKPGDVVQIRERASELPMVLAAIQSQERRVPDHLEVDTEQRSARYLRVPKYC- 203 Query: 188 DVPYPVIMQPNLVVEFYS 205 +VPYP M+ NLVVEFYS Sbjct: 204 EVPYPANMEVNLVVEFYS 221 >gi|58616917|ref|YP_196116.1| 30S ribosomal protein S4 [Ehrlichia ruminantium str. Gardel] gi|75432767|sp|Q5FH70|RS4_EHRRG RecName: Full=30S ribosomal protein S4 gi|58416529|emb|CAI27642.1| 30S ribosomal protein S4 [Ehrlichia ruminantium str. Gardel] Length = 202 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 131/199 (65%), Gaps = 2/199 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G +LWGR K P NTR+Y PG HG KPS FG Q A +K K YY IS Sbjct: 6 KYRASRRLGVSLWGRSKDPFNTRNYPPGQHGNMGYKKPSDFGKQFGAHKKFKFYYA-ISS 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R++F +A + +GDT N + LES L +++Y + VPTIF+ARQ ++H+HVLVNG+ Sbjct: 65 KQMRNMFLKAYKKKGDTGDNFVGLLESMLSSVLYNSGLVPTIFSARQLISHKHVLVNGKV 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI SY K GD I++++K+ L SVL A E+ VP+Y+ V+ ++R+P Sbjct: 125 VNISSYSVKPGDTIKLREKAVNLPSVLAAIDAQEQKVPDYLEVDVKERSVKYLRVPKYY- 183 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +VPYP M+ NLV+EFYSR Sbjct: 184 EVPYPANMEVNLVIEFYSR 202 >gi|255002915|ref|ZP_05277879.1| 30S ribosomal protein S4 [Anaplasma marginale str. Puerto Rico] gi|255004043|ref|ZP_05278844.1| 30S ribosomal protein S4 [Anaplasma marginale str. Virginia] Length = 203 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/198 (48%), Positives = 130/198 (65%), Gaps = 2/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K PV TR+Y PG HG K S FG Q A QK K YY +S Sbjct: 7 KYRASRRLGVNLWGRSKDPVATRNYPPGQHGSMGYKKLSSFGRQFAAHQKFKCYYA-MSS 65 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R+ F A +GDT NL+ LESRL +VY A FVPT+F+ARQ V+H+HV VNG+ Sbjct: 66 KQLRNTFLRAYNRKGDTGDNLVGALESRLAVVVYSAGFVPTVFSARQLVSHKHVTVNGKV 125 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ K GDV+++++++ +L VL A Q ER VP+++ V+ A ++R+P Sbjct: 126 VNIPSFSVKPGDVVQIRERATELPMVLAAIQSQERRVPDHLEVDTAQRSARYLRVPKYC- 184 Query: 188 DVPYPVIMQPNLVVEFYS 205 +VPYP M+ NLVVEF+S Sbjct: 185 EVPYPANMEVNLVVEFFS 202 >gi|222474941|ref|YP_002563356.1| 30S ribosomal protein S4 [Anaplasma marginale str. Florida] gi|222419077|gb|ACM49100.1| 30S ribosomal protein S4 [Anaplasma marginale str. Florida] Length = 250 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 96/198 (48%), Positives = 130/198 (65%), Gaps = 2/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K PV TR+Y PG HG K S FG Q A QK K YY +S Sbjct: 54 KYRASRRLGVNLWGRSKDPVATRNYPPGQHGSMGYKKLSSFGRQFAAHQKFKCYYA-MSS 112 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R+ F A +GDT NL+ LESRL +VY A FVPT+F+ARQ V+H+HV VNG+ Sbjct: 113 KQLRNTFLRAYNRKGDTGDNLVGALESRLAVVVYSAGFVPTVFSARQLVSHKHVTVNGKV 172 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ K GDV+++++++ +L VL A Q ER VP+++ V+ A ++R+P Sbjct: 173 VNIPSFSVKPGDVVQIRERATELPMVLAAIQSQERRVPDHLEVDTAQRSARYLRVPKYC- 231 Query: 188 DVPYPVIMQPNLVVEFYS 205 +VPYP M+ NLVVEF+S Sbjct: 232 EVPYPANMEVNLVVEFFS 249 >gi|57238927|ref|YP_180063.1| 30S ribosomal protein S4 [Ehrlichia ruminantium str. Welgevonden] gi|58578860|ref|YP_197072.1| 30S ribosomal protein S4 [Ehrlichia ruminantium str. Welgevonden] gi|81557345|sp|Q5HBY1|RS4_EHRRW RecName: Full=30S ribosomal protein S4 gi|57161006|emb|CAH57912.1| 30S ribosomal protein S4 [Ehrlichia ruminantium str. Welgevonden] gi|58417486|emb|CAI26690.1| 30S ribosomal protein S4 [Ehrlichia ruminantium str. Welgevonden] Length = 202 Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 2/199 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G +LWGR K P NTR+Y PG HG KPS FG Q A +K K YY IS Sbjct: 6 KYRASRRLGVSLWGRSKDPFNTRNYPPGQHGNMGYKKPSDFGKQFGAHKKFKFYYA-ISS 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R++F +A + +GDT N + LES L +++Y + VPTIF+ARQ ++H+HVLVNG+ Sbjct: 65 KQMRNMFLKAYKKKGDTGDNFVGLLESMLSSVLYNSGLVPTIFSARQLISHKHVLVNGKV 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI SY K GD I++++K+ L VL A E+ VP+Y+ V+ ++R+P Sbjct: 125 VNISSYSVKPGDTIKLREKAVNLPPVLAAIDAQEQKVPDYLEVDVKERSVKYLRVPKYY- 183 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +VPYP M+ NLV+EFYSR Sbjct: 184 EVPYPANMEVNLVIEFYSR 202 >gi|152060930|sp|Q5PBD6|RS4_ANAMM RecName: Full=30S ribosomal protein S4 Length = 204 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/198 (47%), Positives = 128/198 (64%), Gaps = 2/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K PV TR+Y G HG K S FG Q A QK K YY +S Sbjct: 8 KYRASRRLGVNLWGRSKDPVATRNYPSGQHGSMGYKKLSSFGRQFAAHQKFKCYYA-MSS 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ + F A +GDT NL+ LESRL +VY A FVPT+F+ARQ V+H+HV VNG+ Sbjct: 67 KQLTNTFLRAYNRKGDTGDNLVGALESRLAVVVYSAGFVPTVFSARQLVSHKHVTVNGKV 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ K GDV+++++++ +L VL A Q ER VP+++ V+ A ++R+P Sbjct: 127 VNIPSFSVKPGDVVQIRERATELPMVLAAIQSQERRVPDHLEVDTAQRSARYLRVPKYC- 185 Query: 188 DVPYPVIMQPNLVVEFYS 205 +VPYP M+ NLVVEF+S Sbjct: 186 EVPYPANMEVNLVVEFFS 203 >gi|42520265|ref|NP_966180.1| 30S ribosomal protein S4 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630200|ref|YP_002726991.1| ribosomal protein S4 [Wolbachia sp. wRi] gi|81652701|sp|Q73HZ8|RS4_WOLPM RecName: Full=30S ribosomal protein S4 gi|254764623|sp|C0R2Q8|RS4_WOLWR RecName: Full=30S ribosomal protein S4 gi|42410003|gb|AAS14114.1| ribosomal protein S4 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592181|gb|ACN95200.1| ribosomal protein S4 [Wolbachia sp. wRi] Length = 204 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 129/206 (62%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K++I RR+G NLWGR K PVN R Y PG HG K S FG Q A +K K Sbjct: 1 MTTVITRKYRISRRLGVNLWGRAKDPVNKRKYPPGQHGILGFKKLSDFGKQFAAHKKFKF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY IS K+ R F +A +G T+ N I LESRL +++Y + VPTI++A+Q ++H+H Sbjct: 61 YYA-ISSKQLRRTFLDAYNRKGYTADNFIGILESRLSSVLYHSGLVPTIYSAKQLISHKH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VN + VNI SYR K GD+I++++++ ++ V+EA Q ER P+Y+ + ++ Sbjct: 120 VTVNDKVVNISSYRVKPGDIIKIRERAAKIPVVVEAEQKQERKAPDYLEADSKEHSVKYL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPY M+ NLVVEFYSR Sbjct: 180 RSP-QYSEVPYSADMEVNLVVEFYSR 204 >gi|190570680|ref|YP_001975038.1| ribosomal protein S4 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019072|ref|ZP_03334879.1| ribosomal protein S4 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226695099|sp|B3CP11|RS4_WOLPP RecName: Full=30S ribosomal protein S4 gi|190356952|emb|CAQ54338.1| ribosomal protein S4 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995181|gb|EEB55822.1| ribosomal protein S4 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 204 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 128/199 (64%), Gaps = 2/199 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++I RR+G NLWGR K VN R Y PG HG K S FG Q A +K K YY IS Sbjct: 8 KYRISRRLGVNLWGRAKDSVNKRKYPPGQHGILGFKKLSDFGKQFAAHKKFKFYYA-ISS 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R F +A + +G T+ N I LESRL +++Y + FVPTI++A+Q ++H+HV VN + Sbjct: 67 KQLRRTFLDAYKRKGYTADNFIGALESRLSSVLYHSGFVPTIYSAKQLISHKHVTVNDKV 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI SYR K GD++++++++ ++ ++EA Q ER P+Y+ + + ++R P Sbjct: 127 VNISSYRVKPGDIVKIRERAAKIPILIEAEQKQERKAPDYLEADSKALSVKYLRAP-QYS 185 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +VPY M+ NLVVEFYSR Sbjct: 186 EVPYSADMEVNLVVEFYSR 204 >gi|58584920|ref|YP_198493.1| 30S ribosomal protein S4 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497678|sp|Q5GRX3|RS4_WOLTR RecName: Full=30S ribosomal protein S4 gi|58419236|gb|AAW71251.1| Ribosomal protein S4 [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 204 Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 130/206 (63%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K++I RR+G NLWGR K PVN R Y PG G + S FG Q A +K K Sbjct: 1 MTTVINRKYRISRRLGINLWGRAKDPVNRRKYPPGQRGILGFKRLSDFGKQFAAHKKFKF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY IS K+ R IF +A +G T+ N I LESRL +++Y + VPTI++A+Q ++H+H Sbjct: 61 YYA-ISSKQLRRIFLDAYNRKGYTADNFIGILESRLSSVLYHSGLVPTIYSAKQLISHKH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VN + VNI SYR K GD++++++++ ++ ++EA Q ER P+Y+ + ++ Sbjct: 120 VTVNDKIVNIPSYRVKPGDIVKIRERAAKIPVIVEAVQKQERKAPDYLEADSKEYSVKYL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +VPY M+ NLVVEFYSR Sbjct: 180 RIP-QYSEVPYSADMEVNLVVEFYSR 204 >gi|253795707|ref|YP_003038803.1| 30S ribosomal subunit protein S4 [Candidatus Hodgkinia cicadicola Dsem] gi|253740015|gb|ACT34350.1| 30S ribosomal subunit protein S4 [Candidatus Hodgkinia cicadicola Dsem] Length = 207 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 124/205 (60%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++R K K DRR+GE+LWG +S VN PG HG + +S S + ++L AKQK+K Sbjct: 1 MNRRLRPKFKFDRRVGESLWGVSRSSVNRVPTAPGQHGYKTRSSVSEYAIRLTAKQKLKF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +++E K +K A + RGD +HNL+ LE RLD +VYRA+ + AARQ ++H H Sbjct: 61 YYSNLTESKLVKAYKTALKYRGDVAHNLVRVLERRLDVLVYRARLAASFRAARQLISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVN V+I S+ CK GDV V A V EA ER VP +IS + ++ T V Sbjct: 121 VLVNNSKVDICSFECKPGDVFRVAPCFVNAAVVKEAVLGCERSVPNHISCDFKHLKFTLV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 + P++ + +PV M P LV E+YS Sbjct: 181 KPPAACGAL-FPVAMCPELVAEYYS 204 >gi|254796937|ref|YP_003081774.1| ribosomal protein S4 [Neorickettsia risticii str. Illinois] gi|254590185|gb|ACT69547.1| ribosomal protein S4 [Neorickettsia risticii str. Illinois] Length = 205 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 131/198 (66%), Gaps = 3/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ R++ +LWG K PV+ R+YGPG HG+ K S F Q A++ + YY I + Sbjct: 8 KFRVSRQMKASLWGSQKDPVHKRNYGPGQHGRAPVKKISDFYKQNAAQRAFRTYY-VIGK 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+F ++F +A R +G+T+ NLIS LESR+ +++YR+ VPTIFAARQ V+H+HV VNG Sbjct: 67 KQFANVFGKAYRGKGNTNDNLISLLESRVSSVLYRSGMVPTIFAARQLVSHKHVTVNGEI 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ KEGDV++++ ++ + V+ A + + P Y+ VN + + +P + Sbjct: 127 VNICSFTLKEGDVVQIRDRASNIPCVVAALS-SNSESPHYLEVNREKRSVKLLVLP-KFE 184 Query: 188 DVPYPVIMQPNLVVEFYS 205 DVPYPV+M+PNLV E++S Sbjct: 185 DVPYPVVMEPNLVTEYFS 202 >gi|313901705|ref|ZP_07835135.1| SSU ribosomal protein S4P [Thermaerobacter subterraneus DSM 13965] gi|313468023|gb|EFR63507.1| SSU ribosomal protein S4P [Thermaerobacter subterraneus DSM 13965] Length = 201 Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KH + RR+G L G PK P R Y PG HG R+ K S +G +L KQK++ Sbjct: 1 MARYTGPKHAMCRRVGRPLCGSPKCPALKRPYPPGQHGPGRRQKLSEYGRRLLEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F+ A RS+G+T L+ LE+RLD +VYR F PTI+AARQ V H H Sbjct: 61 MYG-VLERQFRRYFERAQRSKGNTGERLLQLLETRLDNLVYRMGFAPTIWAARQLVVHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR V+ SY+ + GDVI V++KS+++ + E+ + A+R PEY+SV + T + Sbjct: 120 IQVNGRKVDRPSYQVRPGDVIAVREKSRRIPLIQESLENAQR-APEYLSVEPERFQGTLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ + P+ ++ +L+VEFYSR Sbjct: 179 RVPARDE---IPIDIEESLIVEFYSR 201 >gi|99034786|ref|ZP_01314708.1| hypothetical protein Wendoof_01000474 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 200 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 87/202 (43%), Positives = 125/202 (61%), Gaps = 2/202 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K++I RR+G NLWGR K PVN R Y PG HG K S FG Q A +K K Sbjct: 1 MTTVITRKYRISRRLGVNLWGRAKDPVNKRKYPPGQHGILGFKKLSDFGKQFAAHKKFKF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY IS K+ R F +A +G T+ N I LESRL +++Y + VPTI++A+Q ++H+H Sbjct: 61 YYA-ISSKQLRRTFLDAYNRKGYTADNFIGILESRLSSVLYHSGLVPTIYSAKQLISHKH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VN + VNI SYR K GD+I++++++ ++ V+EA Q ER P+Y+ + ++ Sbjct: 120 VTVNDKVVNISSYRVKPGDIIKIRERAAKIPVVVEAEQKQERKAPDYLEADSKEHSVKYL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVE 202 R P +VPY M+ NLVVE Sbjct: 180 RSP-QYSEVPYSADMEVNLVVE 200 >gi|317122229|ref|YP_004102232.1| 30S ribosomal protein S4P [Thermaerobacter marianensis DSM 12885] gi|315592209|gb|ADU51505.1| SSU ribosomal protein S4P [Thermaerobacter marianensis DSM 12885] Length = 201 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 131/206 (63%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KH + RR+G L G PK P R Y PG HG R+ K S +G +L KQK++ Sbjct: 1 MARYTGPKHAMCRRVGRPLCGSPKCPALKRPYPPGQHGPGRRQKLSEYGRRLLEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F+ A RS+G+T L+ LE+RLD +VYR F P+I+AARQ V H H Sbjct: 61 MYG-VLERQFRRYFERAQRSKGNTGERLLQLLETRLDNLVYRMGFAPSIWAARQLVVHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR V+ SY+ + GDVI V++KS+++ + E+ A+R P+Y+SV + T + Sbjct: 120 IQVNGRKVDRPSYQVRPGDVIAVREKSRRIPLIQESLANAQR-APDYLSVEPERFQGTLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+PS + P+ ++ +L+VEFYSR Sbjct: 179 RVPSRDE---IPIDIEESLIVEFYSR 201 >gi|88608362|ref|YP_506463.1| ribosomal protein S4 [Neorickettsia sennetsu str. Miyayama] gi|123491757|sp|Q2GDI3|RS4_NEOSM RecName: Full=30S ribosomal protein S4 gi|88600531|gb|ABD45999.1| ribosomal protein S4 [Neorickettsia sennetsu str. Miyayama] Length = 205 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 82/198 (41%), Positives = 130/198 (65%), Gaps = 3/198 (1%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ R++ +LWG K PV+ R+Y PG HG+ K S F Q A++ + YY I + Sbjct: 8 KFRVSRQMKASLWGSQKDPVHKRNYAPGQHGRAPVKKISDFYKQNAAQRAFRTYYV-IGK 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+F ++F +A R +G+T+ NLIS LESR+ +++YR+ VPTIFAARQ ++H+HV VNG Sbjct: 67 KQFANVFSKAYRGKGNTNDNLISLLESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEI 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 VNI S+ KEGDV++++ ++ + V+ A + + P Y+ V+ + + +P + Sbjct: 127 VNICSFTLKEGDVVQIRDRASNIPCVVAALN-SNSESPHYLEVDREKRSVKLLVLP-KFE 184 Query: 188 DVPYPVIMQPNLVVEFYS 205 DVPYPV+M+PNLV E++S Sbjct: 185 DVPYPVVMEPNLVTEYFS 202 >gi|224373704|ref|YP_002608076.1| 30S ribosomal protein S4 [Nautilia profundicola AmH] gi|254764602|sp|B9L6T8|RS4_NAUPA RecName: Full=30S ribosomal protein S4 gi|223590010|gb|ACM93746.1| ribosomal protein S4 [Nautilia profundicola AmH] Length = 208 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 98/215 (45%), Positives = 133/215 (61%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+G +L + KS ++ R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYTGPVEKIERRLGVSLELKGERRLAGKSALDKRPYAPGQHGQRR-TKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG + EK+FR F+EA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKIKFYYG-VLEKQFRKFFREANRQEGNTGENLIKLLERRLDNVVYRMGFASTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H+LVNG+ VNI SY KEGD IE+++KSK Q+ LE SQ + + ++ V+ Sbjct: 119 LVTHGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQRALELSQ--QTGIAPWVDVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +V F R+P ++V PV + LVVE YS+ Sbjct: 177 KEKLVGVFQRVPER-EEVNIPV--EERLVVELYSK 208 >gi|51891251|ref|YP_073942.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] gi|81692253|sp|Q67T95|RS4B_SYMTH RecName: Full=30S ribosomal protein S4 B gi|51854940|dbj|BAD39098.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] Length = 201 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KHK+ RR+G L G K P R Y PG HG R K S +G QL KQK++ Sbjct: 1 MARYIGPKHKLCRRVGRPLCGSAKCPALKRPYRPGQHGPGRPQKLSEYGAQLLEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F++A RSRG T L+ LE RLDT+VYR F T+ AARQ V H H Sbjct: 61 IYG-VMERQFRRYFEQAQRSRGVTGEVLLQLLEQRLDTVVYRLGFARTMAAARQLVGHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V +NGR V+I S + K GDV+ + QK++ LA V E+ L R VP Y+S++ M + Sbjct: 120 VTLNGRRVDIASCQVKPGDVVGLTQKARSLAVVRESLDL-RRPVPPYLSLDETTMTSRLQ 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L++ PV + +LVVE Y+R Sbjct: 179 RLP--LRE-EIPVDVDESLVVELYAR 201 >gi|291280122|ref|YP_003496957.1| 30S ribosomal protein S4 [Deferribacter desulfuricans SSM1] gi|290754824|dbj|BAI81201.1| 30S ribosomal protein S4 [Deferribacter desulfuricans SSM1] Length = 208 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 128/204 (62%), Gaps = 12/204 (5%) Query: 10 KIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR G L+ + K + Y PG HGQ RK K S +GLQLR KQK+K+ YG Sbjct: 10 KLCRREGMKLYLKGERCFKDKCAFEKKGYPPGQHGQMRK-KISDYGLQLREKQKVKRIYG 68 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR F A R +G T NL+ LE RLD +VYR+ F + ARQ + H H LV Sbjct: 69 -VLERQFRRYFDRATRMQGITGENLLQLLERRLDNVVYRSGFARSRKEARQLIRHNHFLV 127 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI S+ CKEGDV+EVK+KS+ +A++ E+ + AE R +PE+IS++ N AT R+ Sbjct: 128 NGRKVNIPSFLCKEGDVVEVKEKSRDIAAIKESVETAEGRGLPEWISLDKTNFKATVNRL 187 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ Y V Q +L+VE YS+ Sbjct: 188 PVR-SDINYDV--QEHLIVELYSK 208 >gi|149195169|ref|ZP_01872260.1| 30S ribosomal protein S4 [Caminibacter mediatlanticus TB-2] gi|149134721|gb|EDM23206.1| 30S ribosomal protein S4 [Caminibacter mediatlanticus TB-2] Length = 208 Score = 160 bits (406), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 96/213 (45%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +I+RR+G +L + KS ++ R Y PG HGQRR +K S +G QLR Sbjct: 1 MARYTGPVERIERRLGVSLELKGERRLAGKSALDRRPYAPGQHGQRR-AKISEYGQQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG + EK+FR FKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKIKYYYG-VLEKQFRRFFKEANRQEGNTGENLIKLLERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ VNI SY KEGD IE+++KSK + A +L A+ + ++ V+ + Sbjct: 119 LVTHGHILVNGKRVNIPSYIVKEGDRIEIREKSKNNPQIQRALELTAQTGIAPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 MV F R+P ++V PV LVVE YS+ Sbjct: 179 KMVGVFQRVPER-EEVNIPV--DERLVVELYSK 208 >gi|304316319|ref|YP_003851464.1| ribosomal protein S4 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777821|gb|ADL68380.1| ribosomal protein S4 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 198 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/204 (42%), Positives = 126/204 (61%), Gaps = 6/204 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KH++ R +G L G PK P R Y PG HG R K S +G +L KQK+K Sbjct: 1 MARTIVPKHRMCRIVGHPLCGSPKCPSLKRPYAPGQHGLARGKKLSEYGRRLLEKQKLKS 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y ++ E+++R F++A +S+ TS L+S LE RLD IVYR F PTI++ARQ V+H H Sbjct: 61 IY-NVKERQYRRYFEKALKSKEPTSEKLLSLLERRLDNIVYRMGFAPTIYSARQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ VNI SY GDV+ VK+KSK + + ++ + D+P YI+V+ D M + Sbjct: 120 ILVNGKKVNIPSYEVNVGDVVSVKEKSKNMPLIKQS--IGTNDIPPYINVDVDKMEGKLI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 ++P + PV + +L+VEFY Sbjct: 178 KLP---RRSEIPVEIDDHLLVEFY 198 >gi|297621787|ref|YP_003709924.1| 30S ribosomal protein S4 [Waddlia chondrophila WSU 86-1044] gi|297377088|gb|ADI38918.1| 30S ribosomal protein S4 [Waddlia chondrophila WSU 86-1044] Length = 206 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 133/203 (65%), Gaps = 2/203 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++++I RR G N++GR ++P+ + PG+HG RR+ K Y GLQL KQK+K Sbjct: 1 MARYTGNRNRIARRFGVNIFGRARNPLIHKPNPPGVHGARRRKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISEK+ + +K+A + +G+T +L LE RLD +VYR K TIFAA Q V+H H Sbjct: 60 VYGMISEKQLVNYYKKALKLKGNTPLHLAEMLECRLDNVVYRLKLASTIFAAHQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I S++ K G V+ VK++S+++ +V EA + +DVPEY S++ + + Sbjct: 120 ILVDGKKVDIRSFQVKPGMVVSVKERSQKMKAVNEALDNSMKDVPEYFSLDRNKFSGQLL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEF 203 +P +L+ +P+P+ + V +F Sbjct: 180 SMP-TLEQIPWPLEINLPEVCDF 201 >gi|120609325|ref|YP_969003.1| 30S ribosomal protein S4 [Acidovorax citrulli AAC00-1] gi|152060922|sp|A1TJU1|RS4_ACIAC RecName: Full=30S ribosomal protein S4 gi|120587789|gb|ABM31229.1| SSU ribosomal protein S4P [Acidovorax citrulli AAC00-1] Length = 207 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/211 (43%), Positives = 134/211 (63%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +S + + PG HG+ ++ S FGLQLR KQ Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + EK+FR F+ ADR +G+T NL+S LESRLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA++ +P ++ VN D + Sbjct: 120 SHKAITVNGQSVNIASYLVKPGDVVAVREKSKKQARIVEALQLAQQVGIPAWVEVNADKV 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P +D + + +L+VE YSR Sbjct: 180 EGTFKKAPD--RD-EFGADINESLIVELYSR 207 >gi|326315414|ref|YP_004233086.1| 30S ribosomal protein S4 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372250|gb|ADX44519.1| ribosomal protein S4 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 207 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/211 (42%), Positives = 134/211 (63%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +S + + PG HG+ ++ S FGLQLR KQ Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDFGLQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + EK+FR F+ ADR +G+T NL+S LESRLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+SVNI SY K GD++ V++KSK+ A ++EA QLA++ +P ++ VN D + Sbjct: 120 SHKAITVNGQSVNIASYLVKPGDIVAVREKSKKQARIVEALQLAQQVGIPAWVEVNADKV 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P +D + + +L+VE YSR Sbjct: 180 EGTFKKAPD--RD-EFGADINESLIVELYSR 207 >gi|152993918|ref|YP_001359639.1| 30S ribosomal protein S4 [Sulfurovum sp. NBC37-1] gi|172048747|sp|A6QCS3|RS4_SULNB RecName: Full=30S ribosomal protein S4 gi|151425779|dbj|BAF73282.1| 30S ribosomal protein S4 [Sulfurovum sp. NBC37-1] Length = 208 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 133/213 (62%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +++RR+G +L + KS + R Y PG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGPVERLERRLGVDLGLKGERRLAGKSALEKRPYAPGQHGQRR-TKISEYGLQLQE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG SEK+FR+++KEA+R G+T LI LE RLD +VYR F T +ARQ Sbjct: 60 KQKAKFMYG-TSEKQFRALYKEANRKEGNTGSILIQLLEQRLDNVVYRMGFATTRASARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 FVNH HVLV+G+ V+I SYR K G IE+++KSK + +L A +L + + E++ V+ + Sbjct: 119 FVNHGHVLVDGKRVDIPSYRVKAGQKIEIREKSKTNSQILRAIELTNQTGMVEWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P +++ PV + L+VE YS+ Sbjct: 179 KLFGIFSRVPER-EEIAIPV--EERLIVELYSK 208 >gi|160902229|ref|YP_001567810.1| RNA-binding S4 domain-containing protein [Petrotoga mobilis SJ95] gi|189045390|sp|A9BFZ1|RS4_PETMO RecName: Full=30S ribosomal protein S4 gi|160359873|gb|ABX31487.1| RNA-binding S4 domain protein [Petrotoga mobilis SJ95] Length = 211 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 131/209 (62%), Gaps = 17/209 (8%) Query: 9 HKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 K+ RR G NL+ + KS + R+Y PG HG R+K K + + +QLR+KQ +K+ Y Sbjct: 9 EKLSRREGINLYLKGKRSYTEKSALRKRNYVPGQHG-RQKQKLTQYAMQLRSKQALKRMY 67 Query: 63 GDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 G + E++FR+ F+EA+RSR G+T L+ LE RLD++VY+ F P ARQ V H H+ Sbjct: 68 G-LMERQFRNTFEEAERSRSGETGEVLMQLLERRLDSVVYQMGFAPNRRTARQIVTHGHI 126 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE---RDVPEYISVNHDNMVAT 178 LVNG+ VNI SYR K GDVIEVK+KS+ + V E +L + R++P +++V +N T Sbjct: 127 LVNGKKVNIPSYRVKVGDVIEVKEKSRNIQQVREGLELVQEGYRNIPNWLNVEIENFRGT 186 Query: 179 FVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 F R+P DVP P+ ++E YS+ Sbjct: 187 FQRLPKIDEMDVPVPLTN----IIELYSK 211 >gi|319955881|ref|YP_004167144.1| SSU ribosomal protein s4p [Nitratifractor salsuginis DSM 16511] gi|319418285|gb|ADV45395.1| SSU ribosomal protein S4P [Nitratifractor salsuginis DSM 16511] Length = 208 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K++RR+G +L + KS + R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPREKLERRLGVDLGLKGERRLAGKSALEKRPYPPGQHGQRR-TKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FRSIF+EA+R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRSIFQEANRLEGNTGELLIQLLEQRLDNVVYRMGFATTRAFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 VNH HVLV+G+ V+I SYR K G IE+++KSK + + +L + + E++ V+ + Sbjct: 119 LVNHGHVLVDGKRVDIPSYRVKPGQKIEIREKSKNNPQIQRSVELTNQTGIVEWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F RIP +++ PV + L+VE YS+ Sbjct: 179 KLFGIFTRIPER-EEISIPV--EERLIVELYSK 208 >gi|78186094|ref|YP_374137.1| 30S ribosomal protein S4 [Chlorobium luteolum DSM 273] gi|90101702|sp|Q3B6D7|RS4_PELLD RecName: Full=30S ribosomal protein S4 gi|78165996|gb|ABB23094.1| SSU ribosomal protein S4P [Chlorobium luteolum DSM 273] Length = 203 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 126/207 (60%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALSPKAEKYLERRPFAPGQHGQGRRGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ +E RLD +V+RA F P+ ARQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVSQRGVTGDNLVKLIERRLDNVVFRAGFAPSRAGARQLVSHSH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR VNI S+ GD+IE +QKS+ + +V +A A + +P +I V+ N A F Sbjct: 120 LLVNGRKVNIPSFLVSPGDLIEFRQKSRNMDAVTDALNRAPDARIPAWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P + D+ P Q LVVE YS+ Sbjct: 180 LSVPERV-DIQEPYNEQ--LVVELYSK 203 >gi|281356805|ref|ZP_06243296.1| ribosomal protein S4 [Victivallis vadensis ATCC BAA-548] gi|281316932|gb|EFB00955.1| ribosomal protein S4 [Victivallis vadensis ATCC BAA-548] Length = 200 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M +KHK RRIG+ +WG PK P R Y G HG+ R+ K S +G L KQK+K Sbjct: 1 MPTASRAKHKFCRRIGQCIWGDPKCPSVKRPYAAGPHGKGRRVKLSTYGELLMEKQKLKN 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ISEK+ + + +A G T L LE RLD +V+RA F PTIFAA+QFVNH H Sbjct: 61 YYA-ISEKQLQIAYAKAKAGTGQTHEKLFRSLEQRLDAMVFRAGFAPTIFAAKQFVNHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ ++ S KEG VI + + + ++ E ++ +P Y+ V+ +N+ AT Sbjct: 120 ILVDGKRIDRSSCLVKEGQVISI--DAAKSPAIAEIAKKGNSTIPAYMEVDLENLKATLT 177 Query: 181 RIPSSLKDVPYPV-IMQPNLVVEFYSR 206 R P L+++P V IM V+E+Y+R Sbjct: 178 RAP-QLEEIPVSVKIMS---VIEYYAR 200 >gi|221064828|ref|ZP_03540933.1| ribosomal protein S4 [Comamonas testosteroni KF-1] gi|220709851|gb|EED65219.1| ribosomal protein S4 [Comamonas testosteroni KF-1] Length = 207 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 129/207 (62%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K+ +T+ PG HG+ + S +GLQLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSIADKAKFDTK---PGQHGRTSGQRTSDYGLQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F+ ADR RG+T NL+S LESRLD +VYR F T ARQ V+H+ Sbjct: 65 MYG-VLEKQFRRYFEAADRKRGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+SVNI SY KEGDV+ +++KSK+ A V+EA QLA + P ++ V+ D TF Sbjct: 124 ITVNGQSVNIPSYSVKEGDVVALREKSKKQARVVEALQLAAQVGFPAWVEVSADKAEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D + + +L+VE YSR Sbjct: 184 KKSPD--RD-EFAADINESLIVELYSR 207 >gi|319764615|ref|YP_004128552.1| ribosomal protein s4 [Alicycliphilus denitrificans BC] gi|330826872|ref|YP_004390175.1| 30S ribosomal protein S4 [Alicycliphilus denitrificans K601] gi|317119176|gb|ADV01665.1| ribosomal protein S4 [Alicycliphilus denitrificans BC] gi|329312244|gb|AEB86659.1| ribosomal protein S4 [Alicycliphilus denitrificans K601] Length = 224 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 132/204 (64%), Gaps = 9/204 (4%) Query: 8 KHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + +S + + PG HG+ ++ S +GLQLR KQK+K+ YG Sbjct: 25 KAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQKVKRMYG 84 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR F+ A+R +G+T NL++ LESRLD +VYR F T ARQ V+H+ + V Sbjct: 85 -VLEKQFRRYFEAAERRKGNTGANLLALLESRLDNVVYRMGFGSTRAEARQLVSHKAITV 143 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG+SVNI SY K GDV+ V++KSK+ A ++EA QLA++ +P ++ VN D + TF ++ Sbjct: 144 NGQSVNIASYLVKTGDVVAVREKSKKQARIVEALQLAQQVGMPAWVEVNADKVEGTFKQV 203 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P +D + + +L+VE YSR Sbjct: 204 PD--RD-QFGADINESLIVELYSR 224 >gi|194334835|ref|YP_002016695.1| 30S ribosomal protein S4 [Prosthecochloris aestuarii DSM 271] gi|226699104|sp|B4S5A2|RS4_PROA2 RecName: Full=30S ribosomal protein S4 gi|194312653|gb|ACF47048.1| ribosomal protein S4 [Prosthecochloris aestuarii DSM 271] Length = 203 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 126/207 (60%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+SK S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALAPKAEKYLERRPYAPGEHGQSRRSKISEYALQLREKQKMKF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V H H Sbjct: 61 LYG-VLEKQFRNYYKKAVAQRGVTGDNLVKLLERRFDNVVFRAGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR VNI S+ K GD IE ++KSK + +V E+ ++ E +P +I V+ + A F Sbjct: 120 MLVNGRKVNIPSFLMKPGDAIEFREKSKNMDAVTESLNKAPESRIPSWIQVDKAHQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++V P Q LVVE YS+ Sbjct: 180 LTVPER-EEVQEPFNEQ--LVVELYSK 203 >gi|239818004|ref|YP_002946914.1| 30S ribosomal protein S4 [Variovorax paradoxus S110] gi|319796381|ref|YP_004158021.1| ribosomal protein s4 [Variovorax paradoxus EPS] gi|259495303|sp|C5CQ76|RS4_VARPS RecName: Full=30S ribosomal protein S4 gi|239804581|gb|ACS21648.1| ribosomal protein S4 [Variovorax paradoxus S110] gi|315598844|gb|ADU39910.1| ribosomal protein S4 [Variovorax paradoxus EPS] Length = 207 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 91/214 (42%), Positives = 131/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ + S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIQDKAKFDSK---PGQHGRTSGQRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR RG+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRRGNTGANLLFILESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDVI V+ KSK+ + EA QLA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIPSYLVKTGDVIAVRDKSKKQTRIAEALQLAQQVGIPAWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF ++P +D + + +L+VE YSR Sbjct: 177 DKAEGTFKKVPD--RD-EFAADINESLIVELYSR 207 >gi|193214825|ref|YP_001996024.1| 30S ribosomal protein S4 [Chloroherpeton thalassium ATCC 35110] gi|226697824|sp|B3QYE9|RS4_CHLT3 RecName: Full=30S ribosomal protein S4 gi|193088302|gb|ACF13577.1| ribosomal protein S4 [Chloroherpeton thalassium ATCC 35110] Length = 203 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 127/207 (61%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R+Y PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALAPKAEKYLGRRAYAPGQHGQSRKGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V+H H Sbjct: 61 IYG-VLERQFRNYYKKAVSQRGVTGENLVKLLECRFDNVVFRAGFSPSRAGARQLVSHCH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 + +NG VNI SY+ K GDVI+ ++KS+ + +V + ++ + +P++I V+ NM A F Sbjct: 120 LRINGNKVNIPSYQVKPGDVIDFREKSRNMDAVRNSLNKTPDSRIPQWIQVDKANMKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+ P Q LVVE YS+ Sbjct: 180 LNVPER-ADIQEPYNEQ--LVVELYSK 203 >gi|46447001|ref|YP_008366.1| 30S ribosomal protein S4 [Candidatus Protochlamydia amoebophila UWE25] gi|61215574|sp|Q6MBF8|RS4_PARUW RecName: Full=30S ribosomal protein S4 gi|46400642|emb|CAF24091.1| probable 30S ribosomal protein S4 [Candidatus Protochlamydia amoebophila UWE25] Length = 206 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 130/205 (63%), Gaps = 2/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ SK++I RR G N++GR ++P+ + PG+HG RR+ K S FGLQL KQK+K Sbjct: 1 MARYTGSKNRIARRYGVNIFGRARNPLLHKPNPPGVHGARRRKK-SDFGLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ + +K+A R G+T+ + LE RLD +VYR KF TIFAA+Q V H H Sbjct: 60 IYGMLSEKQLVAYYKKALRLEGNTASHFAEMLECRLDNLVYRLKFGHTIFAAQQLVAHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+ S++ K G VI +K+KS+++ + EA R VPEY+S + ++ + Sbjct: 120 ILVDGKKVDRRSFQVKPGMVISIKEKSRKIKIIAEALDNPARSVPEYLSSDKEHFSGQLL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 P + +P+P+ + ++ +F + Sbjct: 180 AKPIP-EQMPWPIEISLPVICDFLA 203 >gi|121603259|ref|YP_980588.1| 30S ribosomal protein S4 [Polaromonas naphthalenivorans CJ2] gi|152112243|sp|A1VJ39|RS4_POLNA RecName: Full=30S ribosomal protein S4 gi|120592228|gb|ABM35667.1| SSU ribosomal protein S4P [Polaromonas naphthalenivorans CJ2] Length = 207 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 91/214 (42%), Positives = 133/214 (62%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSK---PGQHGRTSGTRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR RG+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRRGNTGANLLSVLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDVI V+ KSK+ + EA +LA++ +P ++ VN Sbjct: 117 QLVSHKAMTVNGQSVNIPSYMVKAGDVIAVRDKSKKQTRIAEALELAKQVGLPAWVDVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF ++P +D + + +L+VE YSR Sbjct: 177 DKGEGTFKKVPD--RD-EFAADINESLIVELYSR 207 >gi|108563664|ref|YP_627980.1| 30S ribosomal protein S4 [Helicobacter pylori HPAG1] gi|122980453|sp|Q1CRW6|RS4_HELPH RecName: Full=30S ribosomal protein S4 gi|107837437|gb|ABF85306.1| ribosomal protein S4 [Helicobacter pylori HPAG1] Length = 208 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K V+ A++L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRATELTAQTGIVPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|15645907|ref|NP_208086.1| 30S ribosomal protein S4 [Helicobacter pylori 26695] gi|217032048|ref|ZP_03437548.1| hypothetical protein HPB128_16g8 [Helicobacter pylori B128] gi|298735681|ref|YP_003728206.1| 30S ribosomal protein S4 [Helicobacter pylori B8] gi|2500400|sp|P56011|RS4_HELPY RecName: Full=30S ribosomal protein S4 gi|2314460|gb|AAD08337.1| ribosomal protein S4 (rps4) [Helicobacter pylori 26695] gi|216946196|gb|EEC24804.1| hypothetical protein HPB128_16g8 [Helicobacter pylori B128] gi|298354870|emb|CBI65742.1| small subunit ribosomal protein S4 [Helicobacter pylori B8] gi|307637965|gb|ADN80415.1| SSU ribosomal protein S4p:S9e [Helicobacter pylori 908] gi|325996570|gb|ADZ51975.1| 30S ribosomal protein S4 [Helicobacter pylori 2018] gi|325998160|gb|ADZ50368.1| 30S ribosomal protein S4 [Helicobacter pylori 2017] Length = 208 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K + V+ A +L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNSQVVRAMELTAQTGIVPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|152989997|ref|YP_001355719.1| 30S ribosomal protein S4 [Nitratiruptor sp. SB155-2] gi|172048726|sp|A6Q1K3|RS4_NITSB RecName: Full=30S ribosomal protein S4 gi|151421858|dbj|BAF69362.1| 30S ribosomal protein S4 [Nitratiruptor sp. SB155-2] Length = 208 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 131/214 (61%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+G +L + KS + R Y PG HGQRR SK S +GLQLR Sbjct: 1 MARYRGPVEKIERRLGVSLALKGERRLAGKSALEKRPYPPGQHGQRR-SKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ++EK+FR++FKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VAEKQFRNLFKEANRMEGNTGENLIKLLERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNH 172 VNH HVLV+G+ VNI S+R K G IE+++KSK + + +L + VP ++ V+ Sbjct: 119 LVNHGHVLVDGKRVNIPSFRVKPGQKIEIREKSKNNPQIQRSLELTNQTGIVP-WVDVDK 177 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F RIP +++ PV + L+VE YS+ Sbjct: 178 EKVFGIFTRIPER-EEIDIPV--EERLIVELYSK 208 >gi|264680561|ref|YP_003280471.1| ribosomal protein S4 [Comamonas testosteroni CNB-2] gi|299532875|ref|ZP_07046262.1| 30S ribosomal protein S4 [Comamonas testosteroni S44] gi|262211077|gb|ACY35175.1| ribosomal protein S4 [Comamonas testosteroni CNB-2] gi|298719099|gb|EFI60069.1| 30S ribosomal protein S4 [Comamonas testosteroni S44] Length = 207 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 129/207 (62%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K+ +T+ PG HG+ + S +GLQLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSIADKAKFDTK---PGQHGRTSGQRTSDYGLQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F+ ADR RG+T NL+S LESRLD +VYR F T ARQ V+H+ Sbjct: 65 MYG-VLEKQFRRYFEAADRKRGNTGANLLSLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+SVNI S+ KEGDV+ +++KSK+ A V+EA QLA + P ++ V+ D TF Sbjct: 124 ITVNGQSVNIPSFSVKEGDVVALREKSKKQARVVEALQLAAQVGFPAWVEVSADKAEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D + + +L+VE YSR Sbjct: 184 KKSPD--RD-EFAADINESLIVELYSR 207 >gi|315587183|gb|ADU41564.1| 30S ribosomal protein S4 [Helicobacter pylori 35A] Length = 208 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K V+ A +L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIAPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|315453711|ref|YP_004073981.1| 30S ribosomal protein S4 [Helicobacter felis ATCC 49179] gi|315132763|emb|CBY83391.1| 30S ribosomal protein S4 [Helicobacter felis ATCC 49179] Length = 208 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 128/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K++RR G +L+ + KS ++ R+YGPG HGQRR K S +GLQLR Sbjct: 1 MARYRGAVEKLERRFGISLFLKGERRLSGKSALDKRAYGPGQHGQRR-GKISDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF+EA+R G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKAMYG-ISEKQFRSIFREANRMEGNTGENLVRLLERRLDNVVYRMGFATTRSFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+LV+G+ ++I S K G IE+K+KSK+ + A +L + + +I V+ D Sbjct: 119 LVTHGHILVDGKRMDIPSAFIKSGQKIEIKEKSKENPQITRAVELTNQVGIVPWIDVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P +V P ++ L+VE YS+ Sbjct: 179 KKFGIFTRYPER-DEVSLP--LEERLIVELYSK 208 >gi|21674972|ref|NP_663037.1| 30S ribosomal protein S4 [Chlorobium tepidum TLS] gi|26399358|sp|P59129|RS4_CHLTE RecName: Full=30S ribosomal protein S4 gi|21648204|gb|AAM73379.1| ribosomal protein S4 [Chlorobium tepidum TLS] Length = 203 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 125/207 (60%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALSPKAEKYLERRPYAPGQHGQSRRGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE RLD +VYR F P+ ARQ V H H Sbjct: 61 LYG-ILEKQFRNYYKKAVAQRGVTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI S+ GD IE +QKS+ L +V ++ +++ + +PE+I V+ N A F Sbjct: 120 MLVNGKKVNIPSFLVSPGDQIEFRQKSRNLDAVADSLNKVPDSRIPEWIQVDKANRKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP + V P Q LVVE YS+ Sbjct: 180 LAIPER-EAVQEPFNEQ--LVVELYSK 203 >gi|89902965|ref|YP_525436.1| 30S ribosomal protein S4 [Rhodoferax ferrireducens T118] gi|122478015|sp|Q21QP8|RS4_RHOFD RecName: Full=30S ribosomal protein S4 gi|89347702|gb|ABD71905.1| SSU ribosomal protein S4P [Rhodoferax ferrireducens T118] Length = 207 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 17/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYG--------PGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L+ + RS G PG HG+ ++ S FGLQL Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSAR----RSIGDKAKFDSKPGQHGRTSGARTSDFGLQL 56 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+K+ YG + EK+FR F+EADR +G+T NL+S LESRLD +VYR F T A Sbjct: 57 REKQKVKRMYG-VLEKQFRRYFEEADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEA 115 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN 171 RQ V+H+ + VNG+SVNI SY K GD+I V+ KSK+ ++EA QLA++ +P ++ +N Sbjct: 116 RQLVSHKAMTVNGKSVNIPSYMVKAGDMIAVRDKSKKQNRIVEALQLAQQVGMPAWVEIN 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF +P +D + + +L+VE YSR Sbjct: 176 AEKAEGTFKAVPD--RD-QFAADVNESLIVELYSR 207 >gi|302388739|ref|YP_003824560.1| SSU ribosomal protein S4P [Thermosediminibacter oceani DSM 16646] gi|302199367|gb|ADL06937.1| SSU ribosomal protein S4P [Thermosediminibacter oceani DSM 16646] Length = 208 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 127/207 (61%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK ++ R Y PG HGQ K K S +GLQLR KQK K+ Sbjct: 11 LCRREGMKLYLK---GERCYT-PKCAIDRRGYAPGQHGQM-KRKLSEYGLQLREKQKAKR 65 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F+ F+EA R +G T NL+ LE RLD +VYR F + ARQ V H H Sbjct: 66 IYG-VLERQFKIYFEEAIRRKGVTGENLLRLLECRLDNVVYRLGFAKSRAQARQIVRHGH 124 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 + VNGR V I SY+ +E DVI V++KS+ L E ++ + R VPE++SVN+D + Sbjct: 125 IEVNGRKVTIPSYQVREKDVIAVREKSRSLDFFKEMAEAGKGRIVPEWLSVNYDTLTGEV 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P+ +D+ P+ Q +L+VE YS+ Sbjct: 185 VRMPNR-EDIDVPI--QEHLIVELYSK 208 >gi|261838613|gb|ACX98379.1| ribosomal protein S4 [Helicobacter pylori 51] Length = 208 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K V+ A +L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIVPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|15612279|ref|NP_223932.1| 30S ribosomal protein S4 [Helicobacter pylori J99] gi|7388210|sp|Q9ZJT4|RS4_HELPJ RecName: Full=30S ribosomal protein S4 gi|4155842|gb|AAD06816.1| 30S RIBOSOMAL PROTEIN S4 [Helicobacter pylori J99] gi|261840009|gb|ACX99774.1| 30S ribosomal protein S4 [Helicobacter pylori 52] gi|297380476|gb|ADI35363.1| ribosomal protein S4 [Helicobacter pylori v225d] Length = 208 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-TKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K V+ A +L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|222109617|ref|YP_002551881.1| 30S ribosomal protein s4 [Acidovorax ebreus TPSY] gi|254764586|sp|B9MBW1|RS4_DIAST RecName: Full=30S ribosomal protein S4 gi|221729061|gb|ACM31881.1| ribosomal protein S4 [Acidovorax ebreus TPSY] Length = 207 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 133/211 (63%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +S + + PG HG+ ++ S +GLQLR KQ Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + EK+FR F+ A+R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA++ +P ++ VN D + Sbjct: 120 SHKAITVNGQSVNIASYLVKAGDVVAVREKSKKQARIVEALQLAQQVGMPVWVEVNADKV 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P +D + + +L+VE YSR Sbjct: 180 EGTFKKVPD--RD-EFGADINESLIVELYSR 207 >gi|109946782|ref|YP_664010.1| 30S ribosomal protein S4 [Helicobacter acinonychis str. Sheeba] gi|188528082|ref|YP_001910769.1| 30S ribosomal protein S4 [Helicobacter pylori Shi470] gi|207092545|ref|ZP_03240332.1| 30S ribosomal protein S4 [Helicobacter pylori HPKX_438_AG0C1] gi|208435192|ref|YP_002266858.1| ribosomal protein S4 [Helicobacter pylori G27] gi|210135453|ref|YP_002301892.1| 30S ribosomal protein S4 [Helicobacter pylori P12] gi|217033613|ref|ZP_03439041.1| hypothetical protein HP9810_899g49 [Helicobacter pylori 98-10] gi|254779836|ref|YP_003057942.1| 30S ribosomal protein S4 [Helicobacter pylori B38] gi|308183404|ref|YP_003927531.1| 30S ribosomal protein S4 [Helicobacter pylori PeCan4] gi|308185046|ref|YP_003929179.1| 30S ribosomal protein S4 [Helicobacter pylori SJM180] gi|123362789|sp|Q17ZB5|RS4_HELAH RecName: Full=30S ribosomal protein S4 gi|226699072|sp|B6JND4|RS4_HELP2 RecName: Full=30S ribosomal protein S4 gi|226699073|sp|B5Z8U3|RS4_HELPG RecName: Full=30S ribosomal protein S4 gi|226699074|sp|B2UV57|RS4_HELPS RecName: Full=30S ribosomal protein S4 gi|109714003|emb|CAJ99011.1| 30S ribosomal protein S4 [Helicobacter acinonychis str. Sheeba] gi|188144322|gb|ACD48739.1| 30S ribosomal protein S4 [Helicobacter pylori Shi470] gi|208433121|gb|ACI27992.1| ribosomal protein S4 [Helicobacter pylori G27] gi|210133421|gb|ACJ08412.1| 30S ribosomal protein S4 [Helicobacter pylori P12] gi|216943959|gb|EEC23393.1| hypothetical protein HP9810_899g49 [Helicobacter pylori 98-10] gi|254001748|emb|CAX29979.1| 30S ribosomal subunit protein S4 [Helicobacter pylori B38] gi|308060966|gb|ADO02862.1| 30S ribosomal protein S4 [Helicobacter pylori SJM180] gi|308062579|gb|ADO04467.1| 30S ribosomal protein S4 [Helicobacter pylori Cuz20] gi|308064071|gb|ADO05958.1| 30S ribosomal protein S4 [Helicobacter pylori Sat464] gi|308065589|gb|ADO07481.1| 30S ribosomal protein S4 [Helicobacter pylori PeCan4] gi|317009977|gb|ADU80557.1| 30S ribosomal protein S4 [Helicobacter pylori India7] gi|317011494|gb|ADU85241.1| 30S ribosomal protein S4 [Helicobacter pylori SouthAfrica7] gi|317013081|gb|ADU83689.1| 30S ribosomal protein S4 [Helicobacter pylori Lithuania75] gi|317014685|gb|ADU82121.1| 30S ribosomal protein S4 [Helicobacter pylori Gambia94/24] gi|317178033|dbj|BAJ55822.1| 30S ribosomal protein S4 [Helicobacter pylori F16] gi|317178415|dbj|BAJ56203.1| 30S ribosomal protein S4 [Helicobacter pylori F30] gi|317182540|dbj|BAJ60324.1| 30S ribosomal protein S4 [Helicobacter pylori F57] Length = 208 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K V+ A +L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|193211877|ref|YP_001997830.1| 30S ribosomal protein S4 [Chlorobaculum parvum NCIB 8327] gi|226697821|sp|B3QR97|RS4_CHLP8 RecName: Full=30S ribosomal protein S4 gi|193085354|gb|ACF10630.1| ribosomal protein S4 [Chlorobaculum parvum NCIB 8327] Length = 203 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 123/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALSPKAEKYLERRPYAPGEHGQSRRGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR +K+A RG T NL+ LE R D +VYR F P+ ARQ V H H Sbjct: 61 LYG-VLEKQFRIYYKKAVAQRGVTGDNLVKMLERRFDNVVYRCGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI S+ GD IE +QKS+ L +V ++ ++ AE +PE+I V+ N A F Sbjct: 120 MLVNGKKVNIPSFLVSPGDQIEFRQKSRNLDAVADSLNKAAESRIPEWIQVDKANRKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP + V P Q LVVE YS+ Sbjct: 180 LAIPER-EAVQEPFNEQ--LVVELYSK 203 >gi|145219087|ref|YP_001129796.1| 30S ribosomal protein S4 [Prosthecochloris vibrioformis DSM 265] gi|189045392|sp|A4SCT5|RS4_PROVI RecName: Full=30S ribosomal protein S4 gi|145205251|gb|ABP36294.1| SSU ribosomal protein S4P [Chlorobium phaeovibrioides DSM 265] Length = 203 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 127/207 (61%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ R+SK S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALTPKAEKYMERRPFAPGQHGQGRRSKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ +E R D +V+RA F P+ +RQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVSQRGVTGDNLVRLIERRFDNVVFRAGFAPSRAGSRQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI SY GD+IE + KSK +++V +A S+ + +P +I V+ N A F Sbjct: 120 LLVNGKKVNIPSYMVSPGDLIEFRPKSKNMSAVSDALSKTPDARIPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P + +V P Q LVVE YS+ Sbjct: 180 LAVPERV-EVQEPFNEQ--LVVELYSK 203 >gi|315225425|ref|ZP_07867239.1| 30S ribosomal protein S4 [Capnocytophaga ochracea F0287] gi|314944698|gb|EFS96733.1| 30S ribosomal protein S4 [Capnocytophaga ochracea F0287] Length = 201 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FERKNYPPGQHGLARRRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+F +++++A RS+ T L+ ESRLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L SV+E S A V E+I+ N + M TF Sbjct: 119 HITVNGNIVNIPSYSLKPGDVVGVREKSKSL-SVIENSLAAHSAVYEWITWNPEKMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VAVPQRIQ---IPENIKEQLIVELYSK 201 >gi|225010541|ref|ZP_03701012.1| ribosomal protein S4 [Flavobacteria bacterium MS024-3C] gi|225005370|gb|EEG43321.1| ribosomal protein S4 [Flavobacteria bacterium MS024-3C] Length = 201 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI RR GE ++G KS R++ PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARRFGEAIFGEDKS-FEKRNFPPGQHGNNRRRGKESEYKVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR+IF +A+RS+G T L+ F ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILEKQFRNIFAKANRSKGVTGEVLLQFCESRLDNVVYRMGVSTSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L ++ +A ++ +V E+I+ N + M +F Sbjct: 119 HITVNGSIVNIPSYSLKAGDVVGVREKSKSLQTISDALSVSS-NVYEWITWNSEKMEGSF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VAVPERLQ---IPENIKEQLIVELYSK 201 >gi|268316434|ref|YP_003290153.1| 30S ribosomal protein S4 [Rhodothermus marinus DSM 4252] gi|262333968|gb|ACY47765.1| ribosomal protein S4 [Rhodothermus marinus DSM 4252] Length = 200 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 130/206 (63%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G P + + Y PG HG+ R++K S + +QL+ KQK+K Sbjct: 1 MARYRGPKQKIARRFGEPIFG-PSKALERKPYPPGQHGRTRRAKESEYAVQLKEKQKVKH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A R +G T NL+ LE+RLD VYR F T ARQ V HRH Sbjct: 60 IYG-LLERQFRNLFEKATRKKGITGENLLKMLEARLDNTVYRMGFARTRRQARQLVVHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG+ VN+ SY+ + GDV+ V+ KS+QLA + E + R+ P ++ V+ M F+ Sbjct: 119 IMVNGQVVNVPSYQLRPGDVVAVRPKSRQLAVIQENIKRLRRNFP-WLEVDRKEMQGKFL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ +D+P + + +L+VE YS+ Sbjct: 178 DYPNR-EDIPENI--REHLIVELYSK 200 >gi|322378755|ref|ZP_08053184.1| 30S ribosomal protein S4 [Helicobacter suis HS1] gi|322380604|ref|ZP_08054756.1| 30S ribosomal protein S4 [Helicobacter suis HS5] gi|321146926|gb|EFX41674.1| 30S ribosomal protein S4 [Helicobacter suis HS5] gi|321148785|gb|EFX43256.1| 30S ribosomal protein S4 [Helicobacter suis HS1] Length = 208 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/215 (44%), Positives = 130/215 (60%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S+ K++RR G +L + KS ++ RSYGPG HGQRR K S +GLQLR Sbjct: 1 MARYRSAVEKLERRFGVSLALKGERRLSGKSALDKRSYGPGQHGQRR-GKISDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIFKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKAMYG-ISEKQFRSIFKEANRMEGNTGENLICLLERRLDNVVYRMGFASTRSFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H+LV+G+ ++I S + G IE+ +KSK Q+A +E S+ + + +I V+ Sbjct: 119 LVTHGHILVDGKRLDIPSAFIRHGQKIELIEKSKENPQIARSIELSK--QTGMVAWIDVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F R P ++V P+ + L+VE YS+ Sbjct: 177 QDKRFGIFTRYPQR-EEVVIPI--EERLIVELYSK 208 >gi|121592837|ref|YP_984733.1| 30S ribosomal protein S4 [Acidovorax sp. JS42] gi|152060926|sp|A1W332|RS4_ACISJ RecName: Full=30S ribosomal protein S4 gi|120604917|gb|ABM40657.1| SSU ribosomal protein S4P [Acidovorax sp. JS42] Length = 207 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 132/211 (62%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +S + + PG HG+ ++ S +GLQLR KQ Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + EK+FR F+ A+R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+SVNI SY K GDV+ V+ KSK+ A ++EA QLA++ +P ++ VN D + Sbjct: 120 SHKAITVNGQSVNIASYLVKAGDVVAVRDKSKKQARIVEALQLAQQVGMPVWVEVNADKV 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P +D + + +L+VE YSR Sbjct: 180 EGTFKKVPD--RD-EFGADINESLIVELYSR 207 >gi|254458831|ref|ZP_05072255.1| ribosomal protein S4 [Campylobacterales bacterium GD 1] gi|207084597|gb|EDZ61885.1| ribosomal protein S4 [Campylobacterales bacterium GD 1] Length = 208 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/213 (43%), Positives = 129/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGE--NLWGR----PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G NL G KS + R YGPG HGQRRK K S +GLQL Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSALEKRPYGPGQHGQRRK-KVSEYGLQLNE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++F EA R G+T NLI+ +ESRLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRALFVEAKRREGNTGTNLITLIESRLDNVVYRMGFASTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H+LV+G+ ++I SYR K G IEV++ SK+ ++ A +L + + ++ ++ D Sbjct: 119 LVTHGHLLVDGKKLDIPSYRVKPGQKIEVRESSKKNNQIVRAMELTNQTGLAPWVDIDAD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V PV + L+VE YS+ Sbjct: 179 KVFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|317181016|dbj|BAJ58802.1| 30S ribosomal protein S4 [Helicobacter pylori F32] Length = 208 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/213 (41%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-VSEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ +++ SY + G IE+K+K+K V+ A +L A+ + +I V D Sbjct: 119 LVTHGHVLVDGKRLDVPSYFVRSGQKIEIKEKTKNNPQVVRAMELTAQTGIVPWIDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKYGIFTRYPER-EEVVVPI--EERLIVELYSK 208 >gi|218961407|ref|YP_001741182.1| 30S ribosomal subunit protein S4 [Candidatus Cloacamonas acidaminovorans] gi|167730064|emb|CAO80976.1| 30S ribosomal subunit protein S4 [Candidatus Cloacamonas acidaminovorans] Length = 205 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 123/209 (58%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+K K KI R+ GEN++G K ++ R Y G HG+ + K S +GL L+ KQKM Sbjct: 1 MAKYTGPKAKICRKFGENIYGNAKYDKILSKRKYPAGQHGRNLRRKLSDYGLHLKEKQKM 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + Y + EK+F + FK+A ++ G T NL+ LE RLD +VYR F T ARQF+NH Sbjct: 61 RHTYC-LMEKQFSNYFKKAAKAPGVTGDNLLQLLERRLDNVVYRMGFAVTRMQARQFINH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNMVA 177 H LVNGR V+I SY K GD+IEV+ KSK + +LEA E P ++SV+ +N Sbjct: 120 GHFLVNGRKVDIPSYLVKAGDIIEVRPKSKGMKPLLEAMDKTEVTSPYSWMSVDKENFRG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F IP+ + PV L+VEFYS+ Sbjct: 180 QFNSIPAVSE---IPVTCDLRLIVEFYSK 205 >gi|313683416|ref|YP_004061154.1| SSU ribosomal protein s4p [Sulfuricurvum kujiense DSM 16994] gi|313156276|gb|ADR34954.1| SSU ribosomal protein S4P [Sulfuricurvum kujiense DSM 16994] Length = 208 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS ++ R YGPG HGQRR +K S +G QLR Sbjct: 1 MARYRGPVEKIERRFGVSLGLKGERRLAGKSALDKRPYGPGQHGQRR-TKISEYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+ RS+F EA R G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-LSEKQMRSLFGEAKRRTGNTGTNLVMLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 VNH HVLV+G+ V+I SYR K G +E+ +KSK+ ++ A +L + + ++ ++ D Sbjct: 119 LVNHGHVLVDGKRVDIPSYRVKPGQKVEIHEKSKKNNQIVRAIELTNQTGLAAWVDIDQD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P ++V PV + L+VE YS+ Sbjct: 179 KAFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|282890085|ref|ZP_06298617.1| hypothetical protein pah_c012o009 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500013|gb|EFB42300.1| hypothetical protein pah_c012o009 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 229 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 129/205 (62%), Gaps = 2/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG+HG RR+ K Y G+QL KQK+K Sbjct: 24 MARYTGKKNRIARRFGANVFGRLRNPLLHKPNPPGMHGARRRKKSDY-GVQLEEKQKLKA 82 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE + + +K+A R +T+ L LE RLD +V+R KF TIFAA+Q V+H H Sbjct: 83 IYGMLSEGQLINYYKKAARLEANTAQVLAQMLECRLDIVVHRLKFGSTIFAAQQLVSHGH 142 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+ S++ + G VI V++KS+ + ++ EA + R VPEY+S++ +N + Sbjct: 143 ILVDGKKVDRRSFQVRPGMVISVREKSRGIKAIQEAQDSSMRSVPEYLSIDKENFSGQLL 202 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 P S + +P+P+ + + +F + Sbjct: 203 EYP-SYELMPWPIPINLPEICDFLA 226 >gi|56416574|ref|YP_153648.1| 30S ribosomal protein S4 [Anaplasma marginale str. St. Maries] gi|56387806|gb|AAV86393.1| ribosomal protein S4 [Anaplasma marginale str. St. Maries] Length = 178 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 79/171 (46%), Positives = 109/171 (63%), Gaps = 2/171 (1%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 G HG K S FG Q A QK K YY +S K+ + F A +GDT NL+ LES Sbjct: 9 GQHGSMGYKKLSSFGRQFAAHQKFKCYYA-MSSKQLTNTFLRAYNRKGDTGDNLVGALES 67 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RL +VY A FVPT+F+ARQ V+H+HV VNG+ VNI S+ K GDV+++++++ +L VL Sbjct: 68 RLAVVVYSAGFVPTVFSARQLVSHKHVTVNGKVVNIPSFSVKPGDVVQIRERATELPMVL 127 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 A Q ER VP+++ V+ A ++R+P +VPYP M+ NLVVEF+S Sbjct: 128 AAIQSQERRVPDHLEVDTAQRSARYLRVPKYC-EVPYPANMEVNLVVEFFS 177 >gi|160896494|ref|YP_001562076.1| 30S ribosomal protein S4 [Delftia acidovorans SPH-1] gi|226697834|sp|A9BRX4|RS4_DELAS RecName: Full=30S ribosomal protein S4 gi|160362078|gb|ABX33691.1| ribosomal protein S4 [Delftia acidovorans SPH-1] Length = 207 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/214 (42%), Positives = 131/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS +T+ PG HG+ + S FGLQLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTK---PGQHGRTSGQRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ AD+ +G+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA + P ++ V+ Sbjct: 117 QLVSHKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF + P +D + + +L+VE YSR Sbjct: 177 DKAEGTFKKSPD--RD-EFGADINESLIVELYSR 207 >gi|224437308|ref|ZP_03658280.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818] gi|313143763|ref|ZP_07805956.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818] gi|313128794|gb|EFR46411.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818] Length = 208 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R YGPG HGQ+R K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQKR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++F+EA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKIMYG-VSEKQFRALFREANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SY K G IEVK+KSK V+ A L A+ + ++ V+ + Sbjct: 119 LVTHGHILVNGKHVDIPSYMVKPGQKIEVKEKSKNNPQVVRAIDLTAQTGIVPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKFGIFTRFPQR-EEVVIPI--EERLIVELYSK 208 >gi|156310431|ref|XP_001617741.1| hypothetical protein NEMVEDRAFT_v1g156832 [Nematostella vectensis] gi|156195585|gb|EDO25641.1| predicted protein [Nematostella vectensis] Length = 207 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + KS +T+ PG HG+ + S FGLQLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSIADKSKFDTK---PGQHGRTSGQRTSDFGLQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F+ AD+ +G+T NL+S LESRLD +VYR F T ARQ V+H+ Sbjct: 65 MYG-VLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA + P ++ V+ D TF Sbjct: 124 ITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSADKAEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D + + +L+VE YSR Sbjct: 184 KKSPD--RD-EFGADINESLIVELYSR 207 >gi|226313743|ref|YP_002773637.1| 30S ribosomal protein S4 [Brevibacillus brevis NBRC 100599] gi|254764572|sp|C0ZHK9|RS4_BREBN RecName: Full=30S ribosomal protein S4 gi|226096691|dbj|BAH45133.1| 30S ribosomal protein S4 [Brevibacillus brevis NBRC 100599] Length = 199 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +HK+ RR+G +L G K R++ PG HG + K S +G+QL+ KQK++ Sbjct: 1 MSRYTGPRHKLARRLGISLDGTGKDI--KRNFPPGQHGHNNRRKLSEYGIQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR F A + G N + LESRLD +VYR F PT AARQ VNH H Sbjct: 59 MFG-LNEKQFRRTFDNASKMAGVVGENFMKLLESRLDNLVYRMGFAPTRPAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG+ VNI SYR + GDVI +++KS+ L + +A + +P Y++ N TF Sbjct: 118 FLVNGKKVNIPSYRVQPGDVISIREKSRGLQLIKDALE-GRTFLPNYVTFNDAAAEGTFT 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 177 RLPDREE---MPAEINEVLIVEFYSR 199 >gi|256820007|ref|YP_003141286.1| 30S ribosomal protein S4 [Capnocytophaga ochracea DSM 7271] gi|256581590|gb|ACU92725.1| ribosomal protein S4 [Capnocytophaga ochracea DSM 7271] Length = 201 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FERKNYPPGQHGLARRRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+F +++++A RS+ T L+ ESRLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L SV+E S A V E+I+ N + + TF Sbjct: 119 HITVNGNIVNIPSYSLKPGDVVGVREKSKSL-SVIENSLAAHSAVYEWITWNPEKLEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VAVPQRIQ---IPENIKEQLIVELYSK 201 >gi|296272961|ref|YP_003655592.1| 30S ribosomal protein S4 [Arcobacter nitrofigilis DSM 7299] gi|296097135|gb|ADG93085.1| ribosomal protein S4 [Arcobacter nitrofigilis DSM 7299] Length = 208 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+ +L + KS + R + PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLDADLGLKGERRLNGKSALEKRPFAPGQHGQRR-TKLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR FKEA R G+T NLI+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRKYFKEAARREGNTGSNLITLIEQRLDNVVYRMGFATTRANARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 F H H+LV+G+ V+I S+ K G IE+K+KSK ++ A +L + + E++ V+ D Sbjct: 119 FTTHGHILVDGQKVDIPSFVVKPGQKIEIKEKSKTNPQIVRALELTNQTGMVEWVDVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP+ ++V PV + L+VE YS+ Sbjct: 179 KAFGIFTRIPTR-EEVVIPV--EERLIVELYSK 208 >gi|260061922|ref|YP_003195002.1| 30S ribosomal protein S4 [Robiginitalea biformata HTCC2501] gi|88786055|gb|EAR17224.1| 30S ribosomal protein S4 [Robiginitalea biformata HTCC2501] Length = 201 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ ++Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFGEAIFGDDKA-FEKKNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F +A+RS+G T L+ ESRLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFRNLFAQANRSKGVTGEVLLQLCESRLDNVVYRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY GDV+ V++KSK L ++ E S +V E+IS N D TF Sbjct: 119 HITVNGELVNIPSYSLSAGDVVGVREKSKSLQAI-EDSLSNHSNVYEWISWNSDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VAVPERLQ---IPENIKEQLIVELYSK 201 >gi|213962933|ref|ZP_03391193.1| ribosomal protein S4 [Capnocytophaga sputigena Capno] gi|213954590|gb|EEB65912.1| ribosomal protein S4 [Capnocytophaga sputigena Capno] Length = 201 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FERKNYPPGQHGLARRRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+F +++++A RS+ T L+ ESRLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFHNLYEKAKRSKHITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L SV+E S A V E+I+ N + + TF Sbjct: 119 HITVNGNIVNIPSYSLKPGDVVGVREKSKSL-SVIENSLAAHSTVYEWITWNPEKLEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VAVPQRIQ---IPENIKEQLIVELYSK 201 >gi|189347677|ref|YP_001944206.1| 30S ribosomal protein S4 [Chlorobium limicola DSM 245] gi|226697820|sp|B3EGW4|RS4_CHLL2 RecName: Full=30S ribosomal protein S4 gi|189341824|gb|ACD91227.1| ribosomal protein S4 [Chlorobium limicola DSM 245] Length = 203 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 126/207 (60%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALSPKAEKYLERRPFAPGQHGQSRKGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE RLD +V+R+ F + ARQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNVVFRSGFSASRAGARQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 ++VNG+ VNI S++ GD+IE +Q+S+ + +V ++ S+ E P +I V+ N A F Sbjct: 120 LVVNGKKVNIPSFQVSPGDLIEFRQRSRNMGAVTDSLSKAPESRFPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +D+ P Q LVVE YS+ Sbjct: 180 LSVPER-EDIQEPFNEQ--LVVELYSK 203 >gi|149371654|ref|ZP_01891070.1| 30S ribosomal protein S4 [unidentified eubacterium SCB49] gi|149355281|gb|EDM43841.1| 30S ribosomal protein S4 [unidentified eubacterium SCB49] Length = 201 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIYGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++FK+A + G T L+ ESRLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILEKQFRNLFKKATAAPGITGQVLLQLCESRLDNVVYRMGIAPSRPAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L ++ + S +V E+I+ N + TF Sbjct: 119 HITVNGEKVNIPSYQLKAGDVVAVREKSKSLEAI-QDSLANSSNVYEWITWNSETKQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P + +VE YS+ Sbjct: 178 VTIPQRLQ---IPENINEQFIVELYSK 201 >gi|91786410|ref|YP_547362.1| 30S ribosomal protein S4 [Polaromonas sp. JS666] gi|123060350|sp|Q12G78|RS4_POLSJ RecName: Full=30S ribosomal protein S4 gi|91695635|gb|ABE42464.1| SSU ribosomal protein S4P [Polaromonas sp. JS666] Length = 207 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 130/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRAISDKAKFDSK---PGQHGRTSGTRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRKGNTGANLLFILESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG SVNI SY K GDVI V+ KSK+ V EA +LA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGNSVNIPSYMVKTGDVIAVRDKSKKQTRVTEALELAKQVGLPAWVDVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F ++P +D + + +L+VE YSR Sbjct: 177 DKGEGVFKKVPD--RD-EFAADVNESLIVELYSR 207 >gi|328951209|ref|YP_004368544.1| ribosomal protein S4 [Marinithermus hydrothermalis DSM 14884] gi|328451533|gb|AEB12434.1| ribosomal protein S4 [Marinithermus hydrothermalis DSM 14884] Length = 205 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 126/200 (63%), Gaps = 7/200 (3%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 +I RR+G N+ K ++ R Y PG HGQRR +PS + ++LR KQK++ YG ++E Sbjct: 10 RIARRLGINIAETEKVQRYMDRRPYPPGQHGQRRSRRPSDYAVRLREKQKLRYLYG-LNE 68 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+FR++F+EA R +G T + LESRLD +V+R T ARQFV HRH+LVNG+ Sbjct: 69 KQFRNLFEEATRKKGVTGTVFLQLLESRLDNVVFRLGIATTRRQARQFVVHRHILVNGKR 128 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSL 186 V+ SYR K GDVI V ++SK+L E ++ A+ R +P ++ + + M FVR+P Sbjct: 129 VDRPSYRVKPGDVISVAERSKKLVVFQENAEAAKRRKLPMWLEYDPETMTGKFVRLPER- 187 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 ++ PV Q LV+E+YSR Sbjct: 188 DELAIPVNEQ--LVIEYYSR 205 >gi|169350323|ref|ZP_02867261.1| hypothetical protein CLOSPI_01084 [Clostridium spiroforme DSM 1552] gi|169293106|gb|EDS75239.1| hypothetical protein CLOSPI_01084 [Clostridium spiroforme DSM 1552] Length = 201 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G + K +N R Y PG HGQ+RK KP+ +GLQL KQK++ Sbjct: 1 MSRYTGPQWKISRRLGFSTLENGKE-LNRRPYAPGQHGQKRK-KPTEYGLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F + FK A + G +N LE RLD +VYR F PT AARQ VNH H Sbjct: 59 MYG-VNEKQFHNTFKRAGKMSGIHGYNFFCLLEQRLDNVVYRLGFAPTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG +I SY K GDV+EVK+KSK LA +++AS P ++ V+ M F Sbjct: 118 FLVNGVKTDIPSYTVKVGDVVEVKEKSKNLA-IIKASLENRVHTPAFVEVDETKMSGKFT 176 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L + +L+VE+Y+R Sbjct: 177 RLPERSELNQE-----INESLIVEYYNR 199 >gi|320335497|ref|YP_004172208.1| 30S ribosomal protein S4 [Deinococcus maricopensis DSM 21211] gi|319756786|gb|ADV68543.1| ribosomal protein S4 [Deinococcus maricopensis DSM 21211] Length = 205 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 126/209 (60%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + S K RR G NL K ++ R Y PG HGQRRK +PS + ++LR KQK+ Sbjct: 1 MGRFRGSITKQSRREGINLAETEKVQKYLDRRPYAPGQHGQRRKGRPSDYSVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SEK+FR++F+EA G T + FLE RLD +++R T ARQFV H Sbjct: 61 ARLYG-VSEKQFRNLFEEAANIPGVTGTVFLQFLERRLDNVIFRLGIASTRRQARQFVAH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVA 177 H+LVNG+ +++ SYR K GDVI V ++S+Q +LE + A+ R V ++ N + Sbjct: 120 GHILVNGKLLDVPSYRVKIGDVITVAERSRQNGFILENMEAAKRRRVSPWLEFNTETFTG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +FVR+P+ +D+ P+ N ++EFYSR Sbjct: 180 SFVRLPAR-EDLALPI--NENFIIEFYSR 205 >gi|237751463|ref|ZP_04581943.1| 30S ribosomal protein S4 [Helicobacter bilis ATCC 43879] gi|229372829|gb|EEO23220.1| 30S ribosomal protein S4 [Helicobacter bilis ATCC 43879] Length = 208 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+G +L + KS R YGPG HG RR K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLGVSLALKGERRLAGKSAREKRDYGPGQHGMRR-GKISDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIFKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRSIFKEANRQEGNTGENLIRLLELRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+LV+G+ V+I S++ K+G +EV++KSK ++ + L ++ + ++ ++ D Sbjct: 119 LVTHGHILVDGKRVDIPSFQIKQGQKVEVREKSKNNVQIVRSLDLTDQIGIVPWVDIDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P +V P+ + L+VE YS+ Sbjct: 179 KKFGIFTRNPER-SEVEIPI--EERLIVELYSK 208 >gi|157737265|ref|YP_001489948.1| 30S ribosomal protein S4 [Arcobacter butzleri RM4018] gi|315636982|ref|ZP_07892206.1| 30S ribosomal protein S4 [Arcobacter butzleri JV22] gi|172045648|sp|A8ETK5|RS4_ARCB4 RecName: Full=30S ribosomal protein S4 gi|157699119|gb|ABV67279.1| 30S ribosomal protein S4 [Arcobacter butzleri RM4018] gi|315478812|gb|EFU69521.1| 30S ribosomal protein S4 [Arcobacter butzleri JV22] Length = 208 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/213 (43%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+ +L + KS + R + PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLDADLGLKGERRLSGKSALEKRPFAPGQHGQRR-AKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YG ISEK+FR+ FKEA R G+T LIS +E RLD +V+R F T ARQ Sbjct: 60 KQKVKFMYG-ISEKQFRNYFKEAVRREGNTGAILISLIEQRLDNVVFRMGFATTRANARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 F H HVLV+G+ V+I SY K G IE+K+KSK V+ A +L + + ++++V+ D Sbjct: 119 FTTHGHVLVDGKKVDIPSYLVKPGQKIEIKEKSKSNPQVVRALELTNQTGMVDWVNVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F RIP+ ++V PV + L+VE YS+ Sbjct: 179 KVFGIFTRIPAR-EEVVIPV--EERLIVELYSK 208 >gi|254785103|ref|YP_003072531.1| ribosomal protein S4 [Teredinibacter turnerae T7901] gi|259495299|sp|C5BQ85|RS4_TERTT RecName: Full=30S ribosomal protein S4 gi|237687392|gb|ACR14656.1| ribosomal protein S4 [Teredinibacter turnerae T7901] Length = 206 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 122/202 (60%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L+ RP PG HGQRR + S +G+QLR KQK+++ YG + Sbjct: 10 KLSRREGTDLFLKSGVRPLESKCKAETAPGQHGQRR-GRLSDYGVQLREKQKVRRTYG-L 67 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+FRS +KEA R +G T NL+ LESRLD +VYR F T +RQ V+H+ +LVNG Sbjct: 68 LEKQFRSYYKEAARLKGATGENLLKLLESRLDNVVYRMGFGATRAESRQLVSHKAILVNG 127 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS 184 +++NI SY+ EGDVI V++KSK + A + A+R E++ VN D TF R+P Sbjct: 128 KALNIPSYQVSEGDVIAVREKSKNQLRIQNALGIAAQRPDVEWVDVNADKKEGTFKRVPD 187 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 V P + NL+VE YS+ Sbjct: 188 R---VDLPADINENLIVELYSK 206 >gi|307720212|ref|YP_003891352.1| 30S ribosomal protein S4P [Sulfurimonas autotrophica DSM 16294] gi|306978305|gb|ADN08340.1| SSU ribosomal protein S4P [Sulfurimonas autotrophica DSM 16294] Length = 208 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/213 (43%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGE--NLWGR----PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G NL G KS + R YGPG HGQRRK K S +GLQL Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSALEKRPYGPGQHGQRRK-KVSEYGLQLNE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FR++F EA R G+T NLI+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRALFVEAKRRDGNTGTNLITLIEQRLDNVVYRMGFASTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H+LV+G+ ++I SYR K G IEVK+ SK V+ A +L + + ++ ++ + Sbjct: 119 LVTHGHILVDGKKLDIPSYRVKPGQKIEVKEASKANNQVVRAIELTNQTGLAPWVDIDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V PV + L+VE YS+ Sbjct: 179 KVYGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|32266901|ref|NP_860933.1| 30S ribosomal protein S4 [Helicobacter hepaticus ATCC 51449] gi|41017829|sp|Q7VGC0|RS4_HELHP RecName: Full=30S ribosomal protein S4 gi|32262953|gb|AAP77999.1| ribosomal protein S4 [Helicobacter hepaticus ATCC 51449] Length = 208 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + K ++ R YGPG HGQ+R K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGISLALKGERRLAGKCALDKRPYGPGQHGQKR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++FKEA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKIMYG-VSEKQFRALFKEANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SY K G IEVK+KSK V+ A L ++ + ++ V+ + Sbjct: 119 LVTHGHILVNGKRVDIPSYMVKPGQKIEVKEKSKNNPQVIRAIDLTSQTGIVPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KKFGIFTRFPQR-EEVVIPI--EERLIVELYSK 208 >gi|237734477|ref|ZP_04564958.1| 30S ribosomal protein S4 [Mollicutes bacterium D7] gi|229382297|gb|EEO32388.1| 30S ribosomal protein S4 [Coprobacillus sp. D7] Length = 201 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G + K +N R+Y PG HGQ+RK + Y GLQL KQK++ Sbjct: 1 MSRYTGPQWKLSRRLGFSTLENGKE-LNKRAYAPGQHGQKRKKQTEY-GLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F + FK+A + G +N LE RLD +VYR F PT AARQ VNH H Sbjct: 59 MYG-VNEKQFHNTFKQAGKMEGIHGYNFFCLLERRLDNVVYRLGFAPTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG +I S+R K GDVIEVK+KSK LA +++AS A P ++ V+ + Sbjct: 118 FLVNGIKTDIPSFRVKVGDVIEVKEKSKNLA-IIKASLEARVHTPAFVEVDDTKLTGKLA 176 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L + +L+VE+Y+R Sbjct: 177 RLPERSELNQE-----INESLIVEYYNR 199 >gi|167756759|ref|ZP_02428886.1| hypothetical protein CLORAM_02306 [Clostridium ramosum DSM 1402] gi|167702934|gb|EDS17513.1| hypothetical protein CLORAM_02306 [Clostridium ramosum DSM 1402] Length = 216 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G + K +N R+Y PG HGQ+RK + Y GLQL KQK++ Sbjct: 16 MSRYTGPQWKLSRRLGFSTLENGKE-LNKRAYAPGQHGQKRKKQTEY-GLQLAEKQKVRH 73 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F + FK+A + G +N LE RLD +VYR F PT AARQ VNH H Sbjct: 74 MYG-VNEKQFHNTFKQAGKMEGIHGYNFFCLLERRLDNVVYRLGFAPTRRAARQLVNHGH 132 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG +I S+R K GDVIEVK+KSK LA +++AS A P ++ V+ + Sbjct: 133 FLVNGIKTDIPSFRVKVGDVIEVKEKSKNLA-IIKASLEARVHTPAFVEVDDTKLTGKLA 191 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L + +L+VE+Y+R Sbjct: 192 RLPERSELNQE-----INESLIVEYYNR 214 >gi|10835588|pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin gi|13096397|pdb|1HR0|D Chain D, Crystal Structure Of Initiation Factor If1 Bound To The 30s Ribosomal Subunit gi|14278013|pdb|1GIX|G Chain G, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1gix, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|15826123|pdb|1JGO|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File, 1jgo, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|15826148|pdb|1JGP|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File, 1jgp, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|15826173|pdb|1JGQ|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File, 1jgq, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|28373702|pdb|1ML5|G Chain G, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 gi|110591326|pdb|2F4V|D Chain D, 30s Ribosome + Designer Antibiotic Length = 209 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 128/209 (61%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK + R Y PG HGQ+R +PS + ++LR KQK+++ Sbjct: 11 LCRREGVKLYLK---GERCYS-PKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRR 66 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ V H H Sbjct: 67 IYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGH 125 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VNGR V++ SYR + GD I V +KS+ L + LEA + R V ++S++ + M Sbjct: 126 ITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEA--MKGRKVGPWLSLDVEGMKG 183 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P +D+ PV Q NLV+EFYSR Sbjct: 184 KFLRLPDR-EDLALPV--QENLVIEFYSR 209 >gi|148270449|ref|YP_001244909.1| 30S ribosomal protein S4 [Thermotoga petrophila RKU-1] gi|170289156|ref|YP_001739394.1| RNA-binding S4 domain-containing protein [Thermotoga sp. RQ2] gi|281412756|ref|YP_003346835.1| ribosomal protein S4 [Thermotoga naphthophila RKU-10] gi|172047881|sp|A5IMB0|RS4_THEP1 RecName: Full=30S ribosomal protein S4 gi|226695093|sp|B1LBL3|RS4_THESQ RecName: Full=30S ribosomal protein S4 gi|147735993|gb|ABQ47333.1| SSU ribosomal protein S4P [Thermotoga petrophila RKU-1] gi|170176659|gb|ACB09711.1| RNA-binding S4 domain protein [Thermotoga sp. RQ2] gi|281373859|gb|ADA67421.1| ribosomal protein S4 [Thermotoga naphthophila RKU-10] Length = 209 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/213 (42%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + R Y PG HGQRR +K + +G+QLRA Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTDKCAFDRRPYAPGQHGQRR-AKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG I E++F ++A + GDT NLI LE+RLD +VYR F ARQ Sbjct: 60 KQTVKRIYG-ILERQFERYVEKAMQKAGDTRENLIQILEARLDNVVYRMGFAINRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH H LVNG+ VNI SY K DV+E+++KS+ L + +A + ER V +I V++D Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLKPNDVVELREKSRDLEVIKKAVEANKERSVVPWIEVDYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N TF+R PS + PV +Q V+EFYSR Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDLQT--VIEFYSR 209 >gi|163752892|ref|ZP_02160016.1| 30S ribosomal protein S4 [Kordia algicida OT-1] gi|161326624|gb|EDP97949.1| 30S ribosomal protein S4 [Kordia algicida OT-1] Length = 201 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F A+RS+G T L+ ESRLD +V+R PT ARQ V+HR Sbjct: 60 YTYG-ILERQFRNLFDRANRSKGITGEVLLQLCESRLDNVVFRMGISPTRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L V+E S V E+I+ N + T+ Sbjct: 119 HITVNGEQVNIPSYTLKAGDVVGVREKSKSL-EVIERSLANASHVYEWITWNGEKKEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P ++ L+VE YS+ Sbjct: 178 VSIPERLQ---IPENIKEQLIVELYSK 201 >gi|225011671|ref|ZP_03702109.1| ribosomal protein S4 [Flavobacteria bacterium MS024-2A] gi|225004174|gb|EEG42146.1| ribosomal protein S4 [Flavobacteria bacterium MS024-2A] Length = 201 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEPIFGDDKS-FEKRNYPPGQHGNARRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F++A R++G T L+ ESRLD +VYR PT ARQ V+HR Sbjct: 60 FTYG-ILERQFRNLFEKASRNKGVTGEVLLQLCESRLDNVVYRLGLSPTRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ +NG +NI SY+ K GDV+ V++KSK L ++EA + E++S N + + TF Sbjct: 119 HITINGSILNIPSYQVKVGDVVGVREKSKSLNVIIEAKG-KDASAYEWLSWNKEQLQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P ++ L+VE YS+ Sbjct: 178 VSIPERLQ---IPENIKEQLIVELYSK 201 >gi|295399544|ref|ZP_06809526.1| ribosomal protein S4 [Geobacillus thermoglucosidasius C56-YS93] gi|312109901|ref|YP_003988217.1| ribosomal protein S4 [Geobacillus sp. Y4.1MC1] gi|294979010|gb|EFG54606.1| ribosomal protein S4 [Geobacillus thermoglucosidasius C56-YS93] gi|311215002|gb|ADP73606.1| ribosomal protein S4 [Geobacillus sp. Y4.1MC1] Length = 200 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR F T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGFARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA +L VP+Y++++ D + T+ Sbjct: 119 ILVDGNRVNIPSYRVKPGQTISVREKSRNLQVIKEALEL-NNFVPDYLTLDADKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + +L+VEFYSR Sbjct: 178 RLPERSE---LPAEINESLIVEFYSR 200 >gi|15807121|ref|NP_295850.1| 30S ribosomal protein S4 [Deinococcus radiodurans R1] gi|26399534|sp|Q9RSJ7|RS4_DEIRA RecName: Full=30S ribosomal protein S4 gi|6459925|gb|AAF11677.1|AE002047_10 ribosomal protein S4 [Deinococcus radiodurans R1] Length = 205 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 123/209 (58%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + S K RR G NL K ++ R YGPG HGQRRK +PS + ++LR KQK+ Sbjct: 1 MGRFRGSITKQSRREGINLAETEKVQKYLDRRPYGPGQHGQRRKGRPSDYSVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++EK+FR++F+EA G T + LE RLD +V+R F T ARQFV H Sbjct: 61 ARLYG-MNEKQFRNLFEEASNVPGVTGTVFLQLLERRLDNVVFRMGFASTRRQARQFVGH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVA 177 H+LVNG+ V+I SYR K GD I V + S+ + + E + R V +I ++ DN Sbjct: 120 GHILVNGKKVDIASYRVKIGDEISVAEGSRSMGFIQENMDAQKRRRVSPWIEMDQDNFKG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P+ +D+ P+ N ++E+YSR Sbjct: 180 TFSRLPAR-EDLALPI--NENFIIEYYSR 205 >gi|189501185|ref|YP_001960655.1| 30S ribosomal protein S4 [Chlorobium phaeobacteroides BS1] gi|226697822|sp|B3EP35|RS4_CHLPB RecName: Full=30S ribosomal protein S4 gi|189496626|gb|ACE05174.1| ribosomal protein S4 [Chlorobium phaeobacteroides BS1] Length = 203 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 124/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALSPKAEKYLEKRPYAPGEHGQSRRGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V H H Sbjct: 61 LYG-VLEKQFRNYYKKAVSQRGITGDNLVKLLERRFDNVVFRAGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +L+NG+ V+I SY K GD +E +QKS+ L +V ++ A + +P +I V+ + A F Sbjct: 120 LLINGKKVDIPSYLLKPGDAMEFRQKSQNLDAVADSMNRAPDSRIPSWIQVDKAHKKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++V P Q LVVE YS+ Sbjct: 180 LAVPER-EEVQEPFNEQ--LVVELYSK 203 >gi|15644222|ref|NP_229273.1| 30S ribosomal protein S4 [Thermotoga maritima MSB8] gi|7388196|sp|Q9X1I3|RS4_THEMA RecName: Full=30S ribosomal protein S4 gi|4982039|gb|AAD36541.1|AE001798_6 ribosomal protein S4 [Thermotoga maritima MSB8] Length = 209 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + R Y PG HGQRR +K + +G+QLRA Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTDKCAFDRRPYAPGQHGQRR-TKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG I E++F ++A + GDT NLI LE+RLD +VYR F ARQ Sbjct: 60 KQTVKRIYG-ILERQFERYVEKAMQKAGDTRENLIQILEARLDNVVYRMGFAINRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH H LVNG+ VNI SY + DV+EV++KS+ L + +A + ER + +I V++D Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLRPNDVVEVREKSRDLEVIKKAIEANKERSIVPWIEVDYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N TF+R PS + PV +Q V+EFYSR Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDLQT--VIEFYSR 209 >gi|218294781|ref|ZP_03495635.1| RNA-binding S4 domain protein [Thermus aquaticus Y51MC23] gi|218244689|gb|EED11213.1| RNA-binding S4 domain protein [Thermus aquaticus Y51MC23] Length = 209 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK + R Y PG HGQRR +PS + ++LR KQK+++ Sbjct: 11 LCRREGVKLYLK---GERCYS-PKCAMERRPYPPGQHGQRRARRPSDYAVRLREKQKLRR 66 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE +FR++F+EA R +G T L+ LESRLD +VYR F + ARQ V H H Sbjct: 67 IYG-ISETQFRNLFEEASRKKGVTGTVLLGLLESRLDNVVYRLGFAQSRRQARQMVRHGH 125 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF 179 + VNGR V++ +YR K GD I + ++S+ L + E + R V ++S++ + M F Sbjct: 126 ITVNGRRVDLPAYRVKPGDEIAIAERSRNLTFIRENLEAMKGRKVGPWLSLDVEGMKGKF 185 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P +D+ PV Q LV+EFYSR Sbjct: 186 LRLPDR-EDLALPVNEQ--LVIEFYSR 209 >gi|120437150|ref|YP_862836.1| 30S ribosomal protein S4 [Gramella forsetii KT0803] gi|152060951|sp|A0M574|RS4_GRAFK RecName: Full=30S ribosomal protein S4 gi|117579300|emb|CAL67769.1| 30S ribosomal protein S4 [Gramella forsetii KT0803] Length = 201 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F++A R++G T L+ ESRLD +VYR P+ AARQ V HR Sbjct: 60 YTYG-ILERQFRNMFEKATRAQGITGEVLLQLCESRLDNVVYRMGVAPSRRAARQLVGHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK LA V++ S V E+IS N + TF Sbjct: 119 HITVNGELVNIPSYHLKAGDVVGVREKSKSLA-VVQESLSNNSSVYEWISWNSEKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P V P + +VE YS+ Sbjct: 178 VAVPGR---VQIPENINEQFIVELYSK 201 >gi|305665112|ref|YP_003861399.1| 30S ribosomal protein S4 [Maribacter sp. HTCC2170] gi|88709864|gb|EAR02096.1| 30S ribosomal protein S4 [Maribacter sp. HTCC2170] Length = 201 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS +SY PG HGQ RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFGEAIFGDDKS-FEKKSYPPGQHGQNRRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F A+RS+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILEKQFRNLFASANRSKGVTGEVLLQLCESRLDNVVYRMGVSTSRRGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L ++ +A A V E+I+ N + TF Sbjct: 119 HITVNGELVNIPSYSLKAGDVVGVREKSKSLQTIEDALS-ASGHVYEWITWNSEKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VSVPERMQ---IPENIKEQLIVELYSK 201 >gi|194335471|ref|YP_002017265.1| ribosomal protein S4 [Pelodictyon phaeoclathratiforme BU-1] gi|226699099|sp|B4SBX3|RS4_PELPB RecName: Full=30S ribosomal protein S4 gi|194307948|gb|ACF42648.1| ribosomal protein S4 [Pelodictyon phaeoclathratiforme BU-1] Length = 203 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 124/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALAPKAEKYLERRPFPPGQHGQGRKGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V H H Sbjct: 61 LYG-ILEKQFRNYYKKAVSQRGVTGDNLVKLLERRFDNVVFRAGFAPSRSGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +L+NG+ V+I SY +VIE +Q+SK + +V ++ ++ E +P +I V+ N A F Sbjct: 120 LLINGKKVDIPSYIVSPSEVIEFRQRSKNMGAVTDSLNKAPESRIPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P + +V P Q LVVE YS+ Sbjct: 180 LSVPERV-EVQEPFNEQ--LVVELYSK 203 >gi|328953131|ref|YP_004370465.1| ribosomal protein S4 [Desulfobacca acetoxidans DSM 11109] gi|328453455|gb|AEB09284.1| ribosomal protein S4 [Desulfobacca acetoxidans DSM 11109] Length = 208 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 116/184 (63%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K SY PG HGQ R +K S FG+QLR KQK+++ YG + EK+FRS F ADR +G Sbjct: 30 KCAFERHSYPPGQHGQGR-AKFSDFGIQLREKQKVRRMYG-LLEKQFRSYFAAADRQKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL++ LE RLD +VYR F + ARQ V H H LVNG+ +NI SY GD IE+ Sbjct: 88 TGANLLTLLERRLDNVVYRLGFANSRAQARQLVRHNHFLVNGKKINIPSYLVNVGDTIEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+KS+++ + EA +A R +P+++ V+ +N +R+ S +DV P+ Q +L+VE Sbjct: 148 KEKSRKILQIAEALGAVARRGIPQWLEVDTENFRG-IIRLMPSREDVTMPI--QEHLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|256821686|ref|YP_003145649.1| 30S ribosomal protein S4 [Kangiella koreensis DSM 16069] gi|256795225|gb|ACV25881.1| ribosomal protein S4 [Kangiella koreensis DSM 16069] Length = 206 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + + T+ PG HG RR S+ S +GLQLR KQ Sbjct: 1 MARYLGPKLKLSRREGVDLGHKSGVRAIETKCKIEVAPGQHGARR-SRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEADR +G T NL+ LESRLD +VYR + T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEADRLKGATGVNLLQLLESRLDNVVYRMGYAATRGEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ +L+NG +VNI SY K DV+ V++KS++ A ++ A +L A+RD PE+I V+ M Sbjct: 119 SHKAILINGETVNIPSYTVKAEDVVSVREKSQKQARIVAALELAAQRDKPEWIEVDGKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + NL+VE YS+ Sbjct: 179 EGQFKRVPER---SELDASINENLIVELYSK 206 >gi|220930992|ref|YP_002507900.1| ribosomal protein S4 [Halothermothrix orenii H 168] gi|254764592|sp|B8D0T6|RS4_HALOH RecName: Full=30S ribosomal protein S4 gi|219992302|gb|ACL68905.1| ribosomal protein S4 [Halothermothrix orenii H 168] Length = 208 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 132/215 (61%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K ++ RSY PG HG RR++KP+ +G+QLR Sbjct: 1 MARYKGPVCRLCRREGEKLYLKGQRCYTDKCAIDRRSYPPGEHG-RRRNKPTEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG I EK+F+ F A++ G T N +S LE RLD +VYR + ARQ Sbjct: 60 KQKVKRIYG-ILEKQFKRYFDMAEKMPGVTGENFLSILERRLDNVVYRLGLATSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVK---QKSKQLASVLEASQLAERDVPEYISVN 171 FV H H+LVNGR VNI SY EGDVI VK +KSK+ V E ++ + P+++SVN Sbjct: 119 FVLHGHILVNGRKVNIPSYLVDEGDVISVKDSSRKSKRFKEVFEFNE--DLTPPKWLSVN 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + V +P+ +D+ YPV + +L+VEFYSR Sbjct: 177 LEKAEGKVVAMPTR-EDIDYPV--EEHLIVEFYSR 208 >gi|295135677|ref|YP_003586353.1| 30S ribosomal protein S4 [Zunongwangia profunda SM-A87] gi|294983692|gb|ADF54157.1| 30S ribosomal protein S4 [Zunongwangia profunda SM-A87] Length = 201 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F++A RS+G T L+ ESRLD +V+R P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFRNMFEKATRSQGITGEVLLQLCESRLDNVVFRLGVAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L V++ S +V E+I+ N++ TF Sbjct: 119 HITVNGELVNIPSYQLKAGDVVGVREKSKSL-QVVQDSLANNSNVYEWITWNNETKQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P V P + +VE YS+ Sbjct: 178 VSVPGR---VQIPENINEQFIVELYSK 201 >gi|317129954|ref|YP_004096236.1| ribosomal protein S4 [Bacillus cellulosilyticus DSM 2522] gi|315474902|gb|ADU31505.1| ribosomal protein S4 [Bacillus cellulosilyticus DSM 2522] Length = 200 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R YGPG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LQKRPYGPGEHGPNQRKKMSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR +F +A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFRKLFDQAGKIQGIHGENFMILLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G V+I SYR K G VI +++KS+ L +V A ++ + VP Y+ N D + TF Sbjct: 119 VTVDGGRVDIASYRVKPGQVIGLREKSRNLDAVKNAVEVNDF-VPAYLDFNADALEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++P + Q L+VEFYSR Sbjct: 178 RLPER-SELPAEITEQ--LIVEFYSR 200 >gi|89891131|ref|ZP_01202639.1| 30S ribosomal protein S4 [Flavobacteria bacterium BBFL7] gi|89516775|gb|EAS19434.1| 30S ribosomal protein S4 [Flavobacteria bacterium BBFL7] Length = 201 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/207 (42%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI RR E ++G P + ++Y PG+HG RR+ K S + +QL+ KQK K Sbjct: 1 MARYRGPKAKIARRFREPIFG-PSKALEKKNYPPGMHGNARRRGKESEYAVQLKEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR +F++A RS G T L+ ESRLD +VYR T ARQ V+HR Sbjct: 60 YTYG-VLEKQFRLMFEKAVRSTGITGEVLLQLCESRLDNVVYRMGIAKTRRGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L S ++ S + V ++I+ N +M TF Sbjct: 119 HMTVNGELVNIPSYQLKPGDVVAVREKSKSL-SAIDQSLSSNEHVYDFITFNKASMSGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VSVPERLQ---IPENIKEQLIVELYSK 201 >gi|114567813|ref|YP_754967.1| 30S ribosomal protein S4 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317309|sp|Q0AUK8|RS4_SYNWW RecName: Full=30S ribosomal protein S4 gi|114338748|gb|ABI69596.1| SSU ribosomal protein S4P [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 209 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 11/201 (5%) Query: 13 RRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 RR GE L+ + K V+ R+Y PG HGQ R+ KPS +G+QLR KQK ++ YG I Sbjct: 13 RREGEKLFLKGDRCYSEKCSVSRRAYPPGAHGQGRRQKPSEYGIQLREKQKTRRIYG-IQ 71 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+ F++ADR +G T NL+ LE RLD +VYR F + ARQ VNH H +NG Sbjct: 72 EKQFRNYFRKADRKQGITGDNLLVLLERRLDNVVYRLGFASSRKEARQLVNHGHFFINGH 131 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSS 185 NI S + GD+IEV+Q S++ E Q A + PE++SV+ + M T + P Sbjct: 132 KANIPSMLVRVGDIIEVRQSSRESNKFQEMKEQAAYKTPPEWLSVDAEKMTGTVLAYP-- 189 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + ++ L+VE YSR Sbjct: 190 -RREQIDTLVNEQLIVELYSR 209 >gi|78189781|ref|YP_380119.1| 30S ribosomal protein S4 [Chlorobium chlorochromatii CaD3] gi|90101681|sp|Q3APJ9|RS4_CHLCH RecName: Full=30S ribosomal protein S4 gi|78171980|gb|ABB29076.1| SSU ribosomal protein S4P [Chlorobium chlorochromatii CaD3] Length = 203 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 124/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALAPKAEKYLERRPFPPGQHGQGRKGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE RLD IV+RA F P+ ARQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNIVFRAGFSPSRAGARQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 V VNG+ V+I SY DV+E +QKSK +++V ++ ++ E +P +I V+ + A F Sbjct: 120 VTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVTDSLNKTPESRIPAWIQVDKAHQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+ Q LVVE YS+ Sbjct: 180 LSVPER-ADIQEEFNEQ--LVVELYSK 203 >gi|268680562|ref|YP_003304993.1| ribosomal protein S4 [Sulfurospirillum deleyianum DSM 6946] gi|268618593|gb|ACZ12958.1| ribosomal protein S4 [Sulfurospirillum deleyianum DSM 6946] Length = 208 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/215 (42%), Positives = 126/215 (58%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRR-TKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR IF EA R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRIFDEAARREGNTGINLVLLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H+LVNG V+I SY + GD +EV +KSK Q+ LE +Q + + ++ V Sbjct: 119 LVTHGHILVNGNKVDIPSYIVRAGDKVEVCEKSKNNPQIKRALELTQ--QTGIAPWVDVE 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F RIP ++V PV + L+VE YS+ Sbjct: 177 REKAMGIFTRIPER-EEVVIPV--EERLIVELYSK 208 >gi|91216885|ref|ZP_01253849.1| 30S ribosomal protein S4 [Psychroflexus torquis ATCC 700755] gi|91185046|gb|EAS71425.1| 30S ribosomal protein S4 [Psychroflexus torquis ATCC 700755] Length = 201 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE+++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGESIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F +A+RS G T L+ ESRLD + YR PT ARQ V+H+ Sbjct: 60 YTYG-ILEKQFRNMFSKANRSTGITGEILLQLCESRLDNVTYRLGIAPTRSGARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ VNI SY+ K DV+ +++KSK L +V++ S + V E+++ N + M TF Sbjct: 119 HITVNGQLVNIPSYQIKPNDVVSIREKSKSL-NVVQESLSNNKSVNEWMTWNSEKMQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V++P + P + +VE YS+ Sbjct: 178 VKVPERSQ---IPEKINEQFIVELYSK 201 >gi|241763534|ref|ZP_04761586.1| ribosomal protein S4 [Acidovorax delafieldii 2AN] gi|241367265|gb|EER61605.1| ribosomal protein S4 [Acidovorax delafieldii 2AN] Length = 207 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 131/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG I EK+FR F+ AD +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-ILEKQFRRYFEAADGRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V++KSK+ + ++EA QLA + +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIPSYLVKVGDVVAVREKSKKQSRIVEALQLAAQVGMPAWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F ++P +D + + +L+VE YSR Sbjct: 177 DKAEGIFKKVPD--RD-EFGADINESLIVELYSR 207 >gi|118474712|ref|YP_891268.1| 30S ribosomal protein S4 [Campylobacter fetus subsp. fetus 82-40] gi|152060940|sp|A0RM35|RS4_CAMFF RecName: Full=30S ribosomal protein S4 gi|118413938|gb|ABK82358.1| ribosomal protein S4 [Campylobacter fetus subsp. fetus 82-40] Length = 208 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQR K+K S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQR-KTKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFSEAARREGNTGALLIGLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR G+ IEV +KSK ++ A +L + + ++ V D Sbjct: 119 LVTHGHILVNGKKVDIPSYRVTAGEKIEVAEKSKTNPQIVRAIELTNQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP ++V PV + +VE YS+ Sbjct: 179 KKYGIFTRIPER-EEVVIPV--EERYIVELYSK 208 >gi|301628935|ref|XP_002943604.1| PREDICTED: 30S ribosomal protein S4-like, partial [Xenopus (Silurana) tropicalis] Length = 212 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/204 (41%), Positives = 126/204 (61%), Gaps = 9/204 (4%) Query: 8 KHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + +S + + PG HG+ + S +GLQLR KQK+K+ YG Sbjct: 13 KAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGQRTSDYGLQLREKQKVKRMYG 72 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR F EADR +G+T NL++ LE RLD +VYR F T ARQ V+H+ +LV Sbjct: 73 -VMEKQFRRYFAEADRRKGNTGANLLTLLECRLDNMVYRMGFGSTRAEARQLVSHKAILV 131 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG++VNI S+ K GDV+ V++KSK+ V+EA QLA++ P ++ V D F ++ Sbjct: 132 NGQAVNIPSFLVKVGDVVSVREKSKKQGRVVEALQLAQQVGFPAWVEVAADKAEGVFKKV 191 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P +D + + +L+VE YSR Sbjct: 192 PD--RD-EFGADINESLIVELYSR 212 >gi|95930497|ref|ZP_01313233.1| RNA-binding S4 [Desulfuromonas acetoxidans DSM 684] gi|95133537|gb|EAT15200.1| RNA-binding S4 [Desulfuromonas acetoxidans DSM 684] Length = 206 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 125/209 (59%), Gaps = 6/209 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+K ++K KI RR+G N++G PK + R PG HG R+ KPS + QL KQK+ Sbjct: 1 MAKNFTAKGKIVRRLGVNIYGNPKYDRLLERRPTPPGEHGAGRRGKPSDYSRQLTEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SEK+FR +F +A +G T HN++ LE RLD +V+R T AR FV H Sbjct: 61 RFCYG-LSEKQFRRVFDKAKAMKGVTGHNMLVLLERRLDNMVFRLGLASTRSEARLFVRH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVA 177 H LVNGR V+I SY + GDVIEV++KS+++ + EA + R +P ++ + D Sbjct: 120 GHFLVNGRKVDIPSYLVRAGDVIEVREKSRKIGKISEALDSVMRRGIPSWLELERDAFKG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ +++ PV + L+VE YS+ Sbjct: 180 TVKSLPAR-EELTTPVF-EEQLIVELYSK 206 >gi|239828057|ref|YP_002950681.1| 30S ribosomal protein S4 [Geobacillus sp. WCH70] gi|259495282|sp|C5D699|RS4_GEOSW RecName: Full=30S ribosomal protein S4 gi|239808350|gb|ACS25415.1| ribosomal protein S4 [Geobacillus sp. WCH70] Length = 200 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYPPGQHGPSQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR F T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGFARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA +L VP+Y++++ + + T+ Sbjct: 119 ILVDGNRVNIPSYRVKPGQTISVREKSRNLQVIKEALEL-NNFVPDYLTLDAEKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPSEINEALIVEFYSR 200 >gi|34558005|ref|NP_907820.1| 30S ribosomal protein S4 [Wolinella succinogenes DSM 1740] gi|41017817|sp|Q7M8F6|RS4_WOLSU RecName: Full=30S ribosomal protein S4 gi|34483723|emb|CAE10720.1| 30S RIBOSOMAL PROTEIN S4 [Wolinella succinogenes] Length = 208 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/213 (44%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGE--NLWGR----PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G NL G KS + R Y PG HGQRR SK S +GLQLR Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSSLEKRPYAPGQHGQRR-SKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF+EA+R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRSIFQEANRLEGNTGELLIKLLERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V+H HVLV+G+ VNI SY G +E+++KSK V + +L ++ + ++ V+ Sbjct: 119 MVSHGHVLVDGKRVNIPSYMVLPGQKVEIREKSKNNPQVQRSIELTKQTGIAPWVDVDQA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V PV + L+VE YS+ Sbjct: 179 KVFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|320451274|ref|YP_004203370.1| 30S ribosomal protein S4 [Thermus scotoductus SA-01] gi|320151443|gb|ADW22821.1| 30S ribosomal protein S4 [Thermus scotoductus SA-01] Length = 209 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK + R Y PG HGQ+R +PS + ++LR KQK+++ Sbjct: 11 LCRREGVKLYLK---GERCYS-PKCAMERRPYPPGQHGQKRTRRPSDYAVRLREKQKLRR 66 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE +FR++F+EA R +G T + LESRLD +VYR F + ARQ V H H Sbjct: 67 IYG-ISETQFRNLFEEASRKKGVTGTVFLGLLESRLDNVVYRLGFAASRRQARQMVRHGH 125 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF 179 + VNGR V++ +YR K GD I + + S+ LA + E + R V ++S++ + M F Sbjct: 126 ITVNGRRVDLPAYRVKPGDEIAIAEGSRNLAFIRENLEAMKGRKVGPWLSLDVEGMKGKF 185 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P +D+ PV Q LVVEFYSR Sbjct: 186 LRLPDR-EDLALPVNEQ--LVVEFYSR 209 >gi|311031300|ref|ZP_07709390.1| 30S ribosomal protein S4 [Bacillus sp. m3-13] Length = 200 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGVSLSGTGKE-LEKRPYAPGQHGPNQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FRSIF A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRSIFDAAGKMQGKHGENFMILLESRLDNLVYRLGLARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I S+R K G VI V++KS+ L+SV E+ ++ VPEY++ D + TF Sbjct: 119 ITVDGSRVDIPSFRVKPGQVIGVREKSRNLSSVKESVEV-NNFVPEYLTFTADALEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERSE---LAAEINEALIVEFYSR 200 >gi|212638314|ref|YP_002314834.1| 30S ribosomal protein S4 [Anoxybacillus flavithermus WK1] gi|212559794|gb|ACJ32849.1| Ribosomal protein S4 [Anoxybacillus flavithermus WK1] Length = 219 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +G+QL+ KQK++ Sbjct: 20 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRKKLSEYGMQLQEKQKLRH 78 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR F T ARQ VNH H Sbjct: 79 MYG-VNERQFRKTFEEAGKMAGKHGENFMILLESRLDNLVYRLGFARTRRQARQLVNHGH 137 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SYR K G I V++KS+ L + EA ++ VP+Y++++ D + T+ Sbjct: 138 ILVDGSRVDIPSYRVKPGQTISVREKSRNLQIIKEALEVNS-FVPDYLTLDADKLEGTYT 196 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 197 RLPERSE---LPAEINEALIVEFYSR 219 >gi|228993388|ref|ZP_04153304.1| 30S ribosomal protein S4 [Bacillus pseudomycoides DSM 12442] gi|228766456|gb|EEM15099.1| 30S ribosomal protein S4 [Bacillus pseudomycoides DSM 12442] Length = 200 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + ATF Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLAATFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERAE---LAAEINEALIVEFYSR 200 >gi|291277243|ref|YP_003517015.1| 30S ribosomal protein S4 [Helicobacter mustelae 12198] gi|290964437|emb|CBG40287.1| 30S ribosomal protein S4 [Helicobacter mustelae 12198] Length = 208 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R YGPG HGQ+R K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQKR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR+IF EA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKVMYG-VSEKQFRAIFTEANRLDGNTGENLVRLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H H+LV+G+ VNI S+ K+G IEV +KSK + A +L ++ + ++ V+ D Sbjct: 119 LVSHGHILVDGKRVNIPSFFVKQGQKIEVIEKSKNNPQITRAIELTSQTGISPWVDVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + L+VE YS+ Sbjct: 179 KRFGIFTRYPER-EEVVIPI--EERLIVELYSK 208 >gi|223038545|ref|ZP_03608839.1| ribosomal protein S4 [Campylobacter rectus RM3267] gi|255321747|ref|ZP_05362902.1| ribosomal protein S4 [Campylobacter showae RM3277] gi|222880402|gb|EEF15489.1| ribosomal protein S4 [Campylobacter rectus RM3267] gi|255301227|gb|EET80489.1| ribosomal protein S4 [Campylobacter showae RM3277] Length = 208 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQRR SK S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRR-SKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FR +F+EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G +EV +KSK ++ A L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSYRVQAGAKVEVIEKSKNNPQIVRAIDLTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KKFGIFTRTPER-EEVVIPV--EERFIVELYSK 208 >gi|154494405|ref|ZP_02033725.1| hypothetical protein PARMER_03760 [Parabacteroides merdae ATCC 43184] gi|154085849|gb|EDN84894.1| hypothetical protein PARMER_03760 [Parabacteroides merdae ATCC 43184] Length = 201 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G P ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFG-PDKVLSKKNYPPGQHGNARKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LESRLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLESRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G VI V++KSK L + +A +I + ++ + Sbjct: 119 ITVDGKVVNIPSYSVKAGQVIGVREKSKSLEVIADALSGFNHSKYPWIEWDQSSLSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P + Q L+VE YS+ Sbjct: 179 HLPER-ADIPENIKEQ--LIVELYSK 201 >gi|152977022|ref|YP_001376539.1| 30S ribosomal protein S4 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|171769250|sp|A7GTT6|RS4_BACCN RecName: Full=30S ribosomal protein S4 gi|152025774|gb|ABS23544.1| ribosomal protein S4 [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS+ LA + EA ++ VPEY++ + D + ATF Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSRNLAVIKEAMEV-NNFVPEYLTFDADKLEATFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERAELPAEINEALIVEFYSR 200 >gi|56421337|ref|YP_148655.1| 30S ribosomal protein S4 [Geobacillus kaustophilus HTA426] gi|61215360|sp|Q5KW49|RS4_GEOKA RecName: Full=30S ribosomal protein S4 gi|56381179|dbj|BAD77087.1| 30S ribosomal protein S4 [Geobacillus kaustophilus HTA426] Length = 200 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA + A +P+Y++ N + M T+ Sbjct: 119 ILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLTFNPEKMEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|313680488|ref|YP_004058227.1| SSU ribosomal protein s4p [Oceanithermus profundus DSM 14977] gi|313153203|gb|ADR37054.1| SSU ribosomal protein S4P [Oceanithermus profundus DSM 14977] Length = 209 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 5/185 (2%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK + R Y PG HGQRR +PS + ++LR KQKM++ YG ISEK+FR++F+EA + +G Sbjct: 29 PKCAIERRPYAPGQHGQRRARRPSDYAVRLREKQKMRRIYG-ISEKQFRNLFEEASKKKG 87 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T + LESRLD +VYR + ARQ V H H+ V GR V + SYR + GDVI Sbjct: 88 VTGTVFLRLLESRLDNVVYRLGIASSRKQARQLVRHGHIAVGGRKVTVPSYRVRPGDVIA 147 Query: 143 VKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V + K++ ++ ++ A+ R ++ + + MV F+R+P +D+ PV Q LV+ Sbjct: 148 VTEAGKKIGAIQANAEAAKGRKTGPWLEFDPEKMVGKFLRLPER-EDLALPVNEQ--LVI 204 Query: 202 EFYSR 206 E+YSR Sbjct: 205 EYYSR 209 >gi|254495366|ref|ZP_05108290.1| 30S ribosomal protein S4 [Polaribacter sp. MED152] gi|85819720|gb|EAQ40877.1| 30S ribosomal protein S4 [Polaribacter sp. MED152] Length = 201 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ R++ PG HG RR+ K S + QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKN-FEKRNFPPGQHGNARRRGKKSEYATQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F ++FK+A S+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILERQFSNLFKKASASQGITGEILLQLCESRLDNVVYRMGVSNSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY KEGDV+ V++KSK L ++ E + + +V E+++ N+D TF Sbjct: 119 HITVNGEIVNIPSYSLKEGDVVAVREKSKSLVAI-EDALASNNNVFEWLTWNNDTKSGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V++P L+ P ++ L+VE YS+ Sbjct: 178 VKVPERLQ---IPENIKEQLIVELYSK 201 >gi|86141165|ref|ZP_01059711.1| 30S ribosomal protein S4 [Leeuwenhoekiella blandensis MED217] gi|85831724|gb|EAQ50179.1| 30S ribosomal protein S4 [Leeuwenhoekiella blandensis MED217] Length = 201 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E +FR++F++A + G T L+ ESRLD +V+R P+ AARQ V+HR Sbjct: 60 YTYG-ILENQFRNMFEKATSATGITGVVLLQLCESRLDNVVFRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L+++ ++ A V E+IS N+D+ TF Sbjct: 119 HITVNGELVNIPSYQLKAGDVVAVREKSKSLSAIQDSLANASH-VYEWISWNNDSKQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P + +VE YS+ Sbjct: 178 VSVPERIQ---IPENINEQFIVELYSK 201 >gi|85858172|ref|YP_460374.1| 30S ribosomal protein S4P [Syntrophus aciditrophicus SB] gi|123515693|sp|Q2LQD0|RS4_SYNAS RecName: Full=30S ribosomal protein S4 gi|85721263|gb|ABC76206.1| SSU ribosomal protein S4P [Syntrophus aciditrophicus SB] Length = 209 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + S ++ RR G L+ + K R Y PG HGQ R+ +PS +G+QLR Sbjct: 1 MARYKESACRLCRREGLKLFLKGDRCYGEKCAFERRGYAPGEHGQLRRKQPSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F++AD+ +G T NL+ +LE RLD +VYR F + ARQ Sbjct: 61 KQKLKRMYG-LLEKQFRGYFEKADKKKGITGTNLLLYLERRLDNMVYRLGFANSRNEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H LVNGR VNI S+ GD IEV ++ ++ ++EA + + R +P+++ + + Sbjct: 120 LVRHNHFLVNGRKVNIPSFLVNIGDFIEVTEEGRKNNKIIEAMETIVRRGIPQWLELEQE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P+ +++ P+ Q LVVE YS+ Sbjct: 180 NFKGKVKMLPTR-EELTMPI--QEQLVVELYSK 209 >gi|163786165|ref|ZP_02180613.1| 30S ribosomal protein S4 [Flavobacteriales bacterium ALC-1] gi|159878025|gb|EDP72081.1| 30S ribosomal protein S4 [Flavobacteriales bacterium ALC-1] Length = 201 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ G+ ++G K+ R+Y PG HG +R+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGQAIFGDDKA-FEKRNYPPGQHGANKRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++FK A ++G T L+ ESRLD +V+R PT ARQ V+HR Sbjct: 60 YTYG-VLEKQFRNMFKRATAAQGITGEVLLQLCESRLDNVVFRMGVSPTRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY+ K GDV+ V++KSK L ++ S +V E+I+ N+D M T+ Sbjct: 119 HITVNGEKVNVPSYQLKAGDVVGVREKSKSLEAITN-SLANSSNVYEWITWNNDTMEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ ++ P + +VE YS+ Sbjct: 178 VSVPARIQ---IPEQINEQFIVELYSK 201 >gi|46199603|ref|YP_005270.1| 30S ribosomal protein S4 [Thermus thermophilus HB27] gi|55981634|ref|YP_144931.1| 30S ribosomal protein S4 [Thermus thermophilus HB8] gi|7404455|sp|P80373|RS4_THET8 RecName: Full=30S ribosomal protein S4 gi|50401228|sp|P62664|RS4_THET2 RecName: Full=30S ribosomal protein S4 gi|10120567|pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution gi|13399795|pdb|1HNW|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Tetracycline gi|13399817|pdb|1HNX|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Pactamycin gi|13399839|pdb|1HNZ|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Hygromycin B gi|14278059|pdb|1IBK|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotic Paromomycin gi|14278080|pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With A Messenger Rna Fragment And Cognate Transfer Rna Anticodon Stem-Loop Bound At The A Site And With The Antibiotic Paromomycin gi|14278104|pdb|1IBM|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With A Messenger Rna Fragment And Cognate Transfer Rna Anticodon Stem-Loop Bound At The A Site gi|58177403|pdb|1XMO|D Chain D, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed With Aag-Mrna In The Decoding Center gi|58177426|pdb|1XMQ|D Chain D, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The Decoding Center gi|58177467|pdb|1XNQ|D Chain D, Structure Of An Inosine-Adenine Wobble Base Pair Complex In The Context Of The Decoding Center gi|58177490|pdb|1XNR|D Chain D, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair In The Context Of The Decoding Center gi|66361057|pdb|1YL4|G Chain G, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. 30s Subunit. The Coordinates For The 50s Subunit Are In The Pdb Entry 1yl3 gi|88192239|pdb|2B64|D Chain D, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. gi|88192302|pdb|2B9M|D Chain D, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400. gi|88192358|pdb|2B9O|D Chain D, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal Structure Of The Whole Ribosomal Complex With A Stop Codon In The A-Site. This File Contains The 30s Subunit, Trnas And Mrna From A Crystal Structure Of The Whole Ribosomal Complex With A Stop Codon In The A-Site And Is Described In Remark 400. gi|116667657|pdb|2HHH|D Chain D, Crystal Structure Of Kasugamycin Bound To The 30s Ribosomal Subunit gi|116668200|pdb|2J00|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, A-, P- And E-Site Trnas And Paromomycin For Molecule I. gi|116668261|pdb|2J02|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4) This File Contains The 30s Subunit, Mrna, A-, P- And E-Site Trnas And Paromomycin For Molecule Ii. gi|119389715|pdb|2HGI|G Chain G, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgj. gi|119389772|pdb|2HGP|G Chain G, Crystal Structure Of The 70s Thermus Thermophilus Ribosome With Translocated And Rotated Shine-Dalgarno Duplex. This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgq. gi|119389828|pdb|2HGR|G Chain G, 70s T.Th. Ribosome Functional Complex With Mrna And E- And P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgu. gi|149242711|pdb|2OW8|EE Chain e, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 2ow8, Contains The 30s Ribosome Subunit, Two Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1vsa. gi|149243621|pdb|2UU9|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Gug-Codon In The A-Site And Paromomycin. gi|149243648|pdb|2UUA|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Guc-Codon In The A-Site And Paromomycin. gi|149243675|pdb|2UUB|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Guu-Codon In The A-Site And Paromomycin. gi|149243702|pdb|2UUC|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Gua-Codon In The A-Site And Paromomycin. gi|149243841|pdb|2UXC|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop In Complex With Its Cognate Mrna Ucgu In The Context Of The Thermus Thermophilus 30s Subunit. gi|157836411|pdb|2UXB|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop In Complex With Its Cognate Mrna Gggu In The Context Of The Thermus Thermophilus 30s Subunit. gi|157836488|pdb|2V46|D Chain D, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 1. gi|157836544|pdb|2V48|D Chain D, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 3 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 2. gi|158430903|pdb|2UXD|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop In Complex With Its Cognate Mrna Cggg In The Context Of The Thermus Thermophilus 30s Subunit. gi|160285942|pdb|2QNH|EE Chain e, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 2qnh, Contains The 30s Ribosome Subunit, Two Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1vsp. gi|186972852|pdb|2VQE|D Chain D, Modified Uridines With C5-Methylene Substituents At The First Position Of The Trna Anticodon Stabilize U-G Wobble Pairing During Decoding gi|186972875|pdb|2VQF|D Chain D, Modified Uridines With C5-Methylene Substituents At The First Position Of The Trna Anticodon Stabilize U-G Wobble Pairing During Decoding gi|187609258|pdb|2ZKQ|DD Chain d, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map gi|209156499|pdb|3D5A|D Chain D, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|209156555|pdb|3D5C|D Chain D, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|211938822|pdb|2JL5|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 1 Of 4). This File Contains The 30s Subunit. gi|211938880|pdb|2JL7|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 3 Of 4). This File Contains The 30s Subunit. gi|218766776|pdb|3F1E|D Chain D, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766832|pdb|3F1G|D Chain D, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|226887377|pdb|2WDG|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule I. gi|226887402|pdb|2WDH|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule Ii. gi|226887491|pdb|2WDK|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule I. gi|226887548|pdb|2WDM|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule Ii. gi|237823532|pdb|2WH1|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|237823591|pdb|2WH3|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome). This File Contains The 30s Subunit. gi|260099989|pdb|3HUW|D Chain D, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For Molecule I. gi|260100045|pdb|3HUY|D Chain D, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For Molecule Ii. gi|261824487|pdb|2WRI|D Chain D, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 1 Of 4). gi|261824549|pdb|2WRK|D Chain D, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 3 Of 4). gi|261824611|pdb|2WRN|D Chain D, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). gi|261824670|pdb|2WRQ|D Chain D, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 3 Of 4). gi|281307170|pdb|3KIQ|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 1 Of 4) gi|281307228|pdb|3KIS|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 3 Of 4) gi|281307286|pdb|3KIU|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 1 Of 4) gi|281307344|pdb|3KIX|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 3 Of 4) gi|288965607|pdb|3KNH|D Chain D, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule I gi|289526685|pdb|3KNJ|D Chain D, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule Ii' gi|289526710|pdb|3KNL|D Chain D, The Structures Of Capreomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule I gi|289526735|pdb|3KNN|D Chain D, The Structures Of Capreomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule Ii gi|294979507|pdb|3I8G|G Chain G, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f (50s). gi|294979532|pdb|3I8H|G Chain G, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g (30s). gi|294979591|pdb|3I9B|G Chain G, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B. The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule A In The S Asymmetric Unit Is Deposited As 3i9d (30s) And 3i9e (50s) gi|294979645|pdb|3I9D|G Chain G, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A. The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule B In The S Asymmetric Unit Is Deposited As 3i9b (30s) And 3i9c (50s) gi|295982078|pdb|2X9R|D Chain D, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|295982137|pdb|2X9T|D Chain D, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|307567965|pdb|2XFZ|D Chain D, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 1 Of 4) gi|307568023|pdb|2XG1|D Chain D, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 3 Of 4) gi|307776615|pdb|3OTO|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga Mutant Of Thermus Thermophilus (Hb8) gi|309320238|pdb|3OGE|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Chloramphenicol. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320259|pdb|3OGY|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Chloramphenicol. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320340|pdb|3OHC|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320361|pdb|3OHD|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320442|pdb|3OHY|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320493|pdb|3OI0|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320544|pdb|3OI2|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320595|pdb|3OI4|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|312207676|pdb|2XQD|D Chain D, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s Ribosome With A Gtp Analog gi|313754002|pdb|2XSY|D Chain D, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) gi|313754117|pdb|2XUY|D Chain D, Trna Tranlocation On The 70s Ribosome: The Post- Translocational Translocation Intermediate Ti(Post) gi|325533405|pdb|2Y0U|D Chain D, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533464|pdb|2Y0W|D Chain D, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533523|pdb|2Y0Y|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533582|pdb|2Y10|D Chain D, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533641|pdb|2Y12|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533700|pdb|2Y14|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533759|pdb|2Y16|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533818|pdb|2Y18|D Chain D, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|4519422|dbj|BAA75548.1| ribosomal protein S4 [Thermus thermophilus] gi|46197229|gb|AAS81643.1| SSU ribosomal protein S4P [Thermus thermophilus HB27] gi|55773047|dbj|BAD71488.1| 30S ribosomal protein S4 [Thermus thermophilus HB8] Length = 209 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK + R Y PG HGQ+R +PS + ++LR KQK+++ Sbjct: 11 LCRREGVKLYLK---GERCYS-PKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRR 66 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ V H H Sbjct: 67 IYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGH 125 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VNGR V++ SYR + GD I V +KS+ L + LEA + R V ++S++ + M Sbjct: 126 ITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEA--MKGRKVGPWLSLDVEGMKG 183 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P +D+ PV Q LV+EFYSR Sbjct: 184 KFLRLPDR-EDLALPVNEQ--LVIEFYSR 209 >gi|117927542|ref|YP_872093.1| SSU ribosomal protein S4P [Acidothermus cellulolyticus 11B] gi|152060925|sp|A0LRP7|RS4_ACIC1 RecName: Full=30S ribosomal protein S4 gi|117648005|gb|ABK52107.1| SSU ribosomal protein S4P [Acidothermus cellulolyticus 11B] Length = 208 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQLR KQK + YG + EK+FR ++EA R G Sbjct: 29 PKCPIEERPYPPGEHG-RTRAKESEYLLQLREKQKCARIYG-VLEKQFRRYYEEASRKTG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T NL+ LESRLD +VYRA F + ARQ V H H LVNGR V+I SYR E DVIE Sbjct: 87 RTGENLLRILESRLDNVVYRAGFAASRDQARQLVRHGHFLVNGRRVDIPSYRVSENDVIE 146 Query: 143 VKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V +KS++L + A +A ER VP ++ V + + +PS + D P +Q L+ Sbjct: 147 VAEKSRELTPFVIARAVAGERTVPPWLEVIPNRLRILVHSLPSRQVIDTP----VQEQLI 202 Query: 201 VEFYSR 206 VEFYS+ Sbjct: 203 VEFYSK 208 >gi|188584864|ref|YP_001916409.1| SSU ribosomal protein S4P [Natranaerobius thermophilus JW/NM-WN-LF] gi|226699094|sp|B2A4P9|RS4_NATTJ RecName: Full=30S ribosomal protein S4 gi|179349551|gb|ACB83821.1| SSU ribosomal protein S4P [Natranaerobius thermophilus JW/NM-WN-LF] Length = 209 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 7/185 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ ++Y PG HG R+SK S +G+QLR KQK ++ YG + E +FR F+EADR +G Sbjct: 30 KCAIDKKAYAPGQHGPTRRSKQSEYGMQLREKQKARRIYG-VLENQFRRYFREADRKKGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE+RLD +VYR F + ARQFVNH H++VNG+ VN+ SY K GD + V Sbjct: 89 TGQTLLRLLETRLDNVVYRMGFAASRAEARQFVNHGHIMVNGKRVNVASYEVKPGDEVVV 148 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 ++KS+ + V E +LAE VPE++ +H+N VR P + DVP ++ +L+V Sbjct: 149 REKSRDIPRVQELKELAEGYRVPEWLEADHENFTGRVVRYPEREEIDVP----VEEHLIV 204 Query: 202 EFYSR 206 E YSR Sbjct: 205 ELYSR 209 >gi|14278533|pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 gi|14278554|pdb|1I95|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With Edeine gi|14278575|pdb|1I96|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With The Translation Initiation Factor If3 (C-Terminal Domain) gi|14278597|pdb|1I97|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With Tetracycline gi|20663889|pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit gi|27065879|pdb|1N32|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Bound To Codon And Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The First Codon Position At The A Site With Paromomycin gi|27065906|pdb|1N33|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Bound To Codon And Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The Second Codon Position At The A Site With Paromomycin gi|27065933|pdb|1N34|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In The Presence Of Codon And Crystallographically Disordered Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The First Codon Position gi|27065959|pdb|1N36|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In The Presence Of Crystallographically Disordered Codon And Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The Second Codon Position gi|34811532|pdb|1PNS|D Chain D, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. gi|34811588|pdb|1PNX|D Chain D, Crystal Structure Of The Wild Type Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pnx, Contains Only Molecules Of The 30s Ribosomal Subunit. The 50s Subunit Is In The Pdb File 1pny. gi|56966326|pdb|1VOQ|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966379|pdb|1VOS|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966432|pdb|1VOV|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966485|pdb|1VOX|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966538|pdb|1VOZ|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|149241278|pdb|2E5L|D Chain D, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction gi|224510686|pdb|3FIC|D Chain D, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands gi|226887632|pdb|2ZM6|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s Ribosomal Subunit gi|300508608|pdb|3MR8|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). gi|300508663|pdb|3MS0|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3mrz. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (30s) And 3ms1 (50s). gi|322812553|pdb|3PYN|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|322812606|pdb|3PYQ|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|322812659|pdb|3PYS|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|322812712|pdb|3PYU|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The Second 70s Ribosome Length = 208 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 127/209 (60%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK + R Y PG HGQ+R +PS + ++LR KQK+++ Sbjct: 10 LCRREGVKLYLK---GERCYS-PKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRR 65 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ V H H Sbjct: 66 IYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGH 124 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VNGR V++ SYR + GD I V +KS+ L + LEA + R V ++S++ + M Sbjct: 125 ITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEA--MKGRKVGPWLSLDVEGMKG 182 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P +D+ PV Q LV+EFYSR Sbjct: 183 KFLRLPDR-EDLALPVNEQ--LVIEFYSR 208 >gi|119358165|ref|YP_912809.1| 30S ribosomal protein S4 [Chlorobium phaeobacteroides DSM 266] gi|152060943|sp|A1BJ08|RS4_CHLPD RecName: Full=30S ribosomal protein S4 gi|119355514|gb|ABL66385.1| SSU ribosomal protein S4P [Chlorobium phaeobacteroides DSM 266] Length = 203 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 122/207 (58%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALSPKAEKYLERRPFAPGQHGQSRKGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E +FRS +++A RG T NL+ LE R D +V+R+ F + AARQ V H H Sbjct: 61 LYG-VLENQFRSYYRKAVSQRGVTGDNLVKLLERRFDNVVFRSGFAASRSAARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 + +NG+ VNI SY G++IE +QKSK + +V ++ A + +P +I V+ N A F Sbjct: 120 LTINGKKVNIPSYLLTPGELIEFRQKSKNMGAVTDSLNKAPDARIPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++V P Q LVVE YS+ Sbjct: 180 LSVPER-EEVQEPFNEQ--LVVELYSK 203 >gi|261418186|ref|YP_003251868.1| 30S ribosomal protein S4 [Geobacillus sp. Y412MC61] gi|297529040|ref|YP_003670315.1| ribosomal protein S4 [Geobacillus sp. C56-T3] gi|319767854|ref|YP_004133355.1| ribosomal protein S4 [Geobacillus sp. Y412MC52] gi|261374643|gb|ACX77386.1| ribosomal protein S4 [Geobacillus sp. Y412MC61] gi|297252292|gb|ADI25738.1| ribosomal protein S4 [Geobacillus sp. C56-T3] gi|317112720|gb|ADU95212.1| ribosomal protein S4 [Geobacillus sp. Y412MC52] Length = 200 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKVSRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA + A +P+Y++ N + M T+ Sbjct: 119 ILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLTFNPEKMEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|269836359|ref|YP_003318587.1| 30S ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745] gi|269785622|gb|ACZ37765.1| ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745] Length = 203 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWG-RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M++ KHKI RR G NL G R +S PG H R + + +G QLR KQK+K Sbjct: 1 MARYTGPKHKISRREGINLTGTRSRSLERRLKTPPGAHAHARPRRMTEYGRQLREKQKLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +++G + EK+FR F++A RS+ T L+ LESRLD +VYR F PT ARQ VNH Sbjct: 61 RHFG-MLEKQFRRTFQDARRSKEPTGTALVKLLESRLDNVVYRLGFTPTRPMARQLVNHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HVLVNGR V+I SYR GD I + +K+ ++ V EA Q A +P ++S V Sbjct: 120 HVLVNGRRVDIPSYRVSPGDTIALTEKAAEIPDVQEALQDAGHQIPSWLSREGTQPVGRV 179 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + P+ + D+P + L++ FY+R Sbjct: 180 ISEPNPEELDIPVDI----ELIIAFYAR 203 >gi|228999440|ref|ZP_04159019.1| 30S ribosomal protein S4 [Bacillus mycoides Rock3-17] gi|229006996|ref|ZP_04164624.1| 30S ribosomal protein S4 [Bacillus mycoides Rock1-4] gi|228754235|gb|EEM03652.1| 30S ribosomal protein S4 [Bacillus mycoides Rock1-4] gi|228760385|gb|EEM09352.1| 30S ribosomal protein S4 [Bacillus mycoides Rock3-17] Length = 200 Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + ATF Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERAE---LAAEINEALIVEFYSR 200 >gi|304315968|ref|YP_003851113.1| ribosomal protein S4 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777470|gb|ADL68029.1| ribosomal protein S4 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 206 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S K+ RR G L+ + K P R Y PG HGQ +K K + +G QLR Sbjct: 1 MARYTESTCKLCRREGMKLFLKGDKCYTEKCPFARRPYAPGQHGQNKK-KLTNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++YYG + E++F F+EA+R +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKLRRYYG-VLERQFERYFEEAERMKGITGDNLLQLLERRLDNVVYRLSIASSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 FV H H+LVNG+ V+I SY K GDVI VK SK L V++ + A ++P+++ N D+ Sbjct: 119 FVAHGHILVNGKKVDIPSYLVKAGDVISVKDSSKSL-EVIKNNVEASTNIPDWLDFNKDS 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ + + PV + +L+VE YSR Sbjct: 178 LEGKVLSLPTR-EHIDLPV--EEHLIVELYSR 206 >gi|205374494|ref|ZP_03227290.1| 30S ribosomal protein S4 [Bacillus coahuilensis m4-4] Length = 200 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + +G N + LE RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRNLFDKAAKIQGKHGENFMVLLECRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG V+I S+R + G VI V++KS+ L + EA ++ VPEY++ + D + TF Sbjct: 119 VLVNGSRVDIPSFRVQPGQVIGVREKSRNLDIIKEAIEV-NNFVPEYLTFDADKLEGTFN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|326334520|ref|ZP_08200731.1| 30S ribosomal protein S4 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693289|gb|EGD35217.1| 30S ribosomal protein S4 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 201 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 129/207 (62%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG R+++K S + +QL+ KQK K Sbjct: 1 MARYIGPKSKIARKFGEAIFGEDKS-FAKKNYPPGQHGINRKRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F++++++A RS+G T L+ E+RLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFQNMYEKARRSKGVTGEVLLQLCEARLDNVVYRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD++ V+ KS+ L +V+E + + V E+I+ N + M TF Sbjct: 119 HITVNGEVVNIPSYSLKAGDIVGVRHKSQSL-TVIENALASNSSVYEWITWNPEKMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VALPQRIQ---IPENIKEQLIVELYSK 201 >gi|228472245|ref|ZP_04057011.1| ribosomal protein S4 [Capnocytophaga gingivalis ATCC 33624] gi|228276448|gb|EEK15172.1| ribosomal protein S4 [Capnocytophaga gingivalis ATCC 33624] Length = 201 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 129/207 (62%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG R+++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FAKKNYPPGQHGINRKRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F++++++A RS+G T L+ E+RLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFQNMYEKARRSKGVTGEVLLQLCEARLDNVVYRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD++ V+ KS+ L +V+E S + V E+I+ N + + TF Sbjct: 119 HITVNGEVVNIPSYSLKPGDIVGVRHKSQSL-TVIENSLASNSSVYEWITWNPEKLEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VALPQRIQ---IPENIKEQLIVELYSK 201 >gi|218262262|ref|ZP_03476785.1| hypothetical protein PRABACTJOHN_02459 [Parabacteroides johnsonii DSM 18315] gi|218223485|gb|EEC96135.1| hypothetical protein PRABACTJOHN_02459 [Parabacteroides johnsonii DSM 18315] Length = 201 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G P ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFG-PDKVLSKKNYPPGQHGNARKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G VI V++KSK L + +A +I + ++ + Sbjct: 119 ITVDGKVVNIPSYSVKAGQVIGVREKSKSLEVIADALSGFNHSKYPWIEWDQSSLSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P + Q L+VE YS+ Sbjct: 179 HLPER-ADIPENIKEQ--LIVELYSK 201 >gi|323706478|ref|ZP_08118039.1| ribosomal protein S4 [Thermoanaerobacterium xylanolyticum LX-11] gi|323534198|gb|EGB23988.1| ribosomal protein S4 [Thermoanaerobacterium xylanolyticum LX-11] Length = 206 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 127/212 (59%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S K+ RR G L+ + K P R Y PG HGQ +K K + +G QLR Sbjct: 1 MARYTESTCKLCRREGMKLFLKGDKCYTEKCPFARRPYAPGQHGQNKK-KLTNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++YYG + E++F F+EA+R +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKLRRYYG-VLERQFERYFEEAERMKGITGDNLLQLLERRLDNVVYRLSIASSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 FV+H H+LVNG+ V+I SY K GDV+ VK SK L V++ + A ++P+++ N D+ Sbjct: 119 FVSHGHILVNGKKVDIPSYLVKAGDVVSVKDSSKSL-DVIKNNVEASTNIPDWLDFNRDS 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ + + P+ + +L+VE YSR Sbjct: 178 LEGKVLSLPTR-EHIDLPI--EEHLIVELYSR 206 >gi|291613261|ref|YP_003523418.1| ribosomal protein S4 [Sideroxydans lithotrophicus ES-1] gi|291583373|gb|ADE11031.1| ribosomal protein S4 [Sideroxydans lithotrophicus ES-1] Length = 209 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K + RR GE L+ + K V R+Y PG HGQ++ + S +G QLR Sbjct: 1 MARNLDAKCRQCRREGEKLFLKAEKCFTDKCSVERRAYAPGQHGQKKNQRQSEYGGQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR +K A++SRG T +L+ LESRLD + YR F + ARQ Sbjct: 61 KQKLRRIYG-MMEGQFRLTYKRAEQSRGITGESLLQMLESRLDNVSYRMGFGASRSEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H +LVNG+ VNI SY+ + GDV+EV +KS+ V A Q AE R PE++ V+ Sbjct: 120 VVRHNSILVNGKRVNIPSYQVRPGDVVEVAEKSRNQLRVKAALQAAEQRGFPEWLEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + P + +LVVE YS+ Sbjct: 180 AFKGTFKAVP---QRSELPATINEHLVVELYSK 209 >gi|7440168|pir||JE0399 ribosomal protein S4 - Thermus aquaticus (strain HB8) Length = 209 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 126/209 (60%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE K + GE + PK + R Y PG HGQ+R +PS + ++LR KQK+++ Sbjct: 11 LCRREGVKLYLK---GERCYS-PKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRR 66 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ V H H Sbjct: 67 IYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGH 125 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VNGR V++ SYR + GD I V +KS+ L + LEA + R V ++S+ + M Sbjct: 126 ITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEA--MKGRKVGPWLSLEVEGMKG 183 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P +D+ PV Q LV+EFYSR Sbjct: 184 KFLRLPDR-EDLALPVNEQ--LVIEFYSR 209 >gi|224370666|ref|YP_002604830.1| RpsD [Desulfobacterium autotrophicum HRM2] gi|259495274|sp|C0Q9U8|RS4_DESAH RecName: Full=30S ribosomal protein S4 gi|223693383|gb|ACN16666.1| RpsD [Desulfobacterium autotrophicum HRM2] Length = 208 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + RSY PG HGQRR K S +G+QLR KQK+++ YG I EK+FR IFK+AD +G Sbjct: 30 KCSFDRRSYPPGQHGQRR-MKHSDYGIQLREKQKVRRIYG-IGEKQFRIIFKKADSLKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+S LE RLD +V+R F + R FV H H VNG+ VNI SY K GDV+E+ Sbjct: 88 TGETLLSLLERRLDNVVFRLGFTSSRTQGRHFVRHNHFTVNGKKVNIPSYIIKAGDVVEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+KSK++ ++ ++ + R VP+++ ++ D +P+ +D+ P+ Q L+VE Sbjct: 148 KEKSKKVQAITDSLDTVVRRGVPQWLELDKDGFKGVVKGMPAR-EDITLPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|15605669|ref|NP_213044.1| 30S ribosomal protein S4 [Aquifex aeolicus VF5] gi|6226103|sp|O66484|RS4_AQUAE RecName: Full=30S ribosomal protein S4 gi|2982819|gb|AAC06442.1| ribosomal protein S04 [Aquifex aeolicus VF5] Length = 211 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 126/203 (62%), Gaps = 8/203 (3%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQKMKKYYGDI 65 K+DRR G + G+ +P + R+Y PG HG++ R+ K + +GL+L KQK+K YG + Sbjct: 10 KLDRRFGVVVSGKKSAPKILARRNYPPGQHGRKYGRRKKLTEYGLRLMEKQKLKFLYGGL 69 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+F+ F A +S+ +T L+ +LE RLD +VYR F T ARQ V H HVLVNG Sbjct: 70 REKQFKKYFDMASKSKENTGEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNG 129 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS 184 + VNI SY + GDVIE+K+KS+ + + E + R +P ++ ++ DN VR+P Sbjct: 130 KKVNIPSYLVEPGDVIEIKEKSRDIPFIKENLENVDPRSIPSWLELDKDNFRGRVVRLPE 189 Query: 185 SLKD-VPYPVIMQPNLVVEFYSR 206 ++++ + P+ +Q +VEFYS+ Sbjct: 190 NVQEYLEIPINLQ--YIVEFYSK 210 >gi|222151637|ref|YP_002560793.1| 30S ribosomal protein S4 [Macrococcus caseolyticus JCSC5402] gi|254764595|sp|B9E7C9|RS4_MACCJ RecName: Full=30S ribosomal protein S4 gi|222120762|dbj|BAH18097.1| 30S ribosomal protein S4 [Macrococcus caseolyticus JCSC5402] Length = 200 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 125/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LERRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++FR+IF A + +G N ++ L SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-INERQFRTIFDRAGKMKGIHGANFMALLASRLDAVVYQLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SY+ K G VI V++KS++L + E+ +L+ VPEY++ + D + TFV Sbjct: 119 IMVDGARVDIPSYQLKPGQVISVREKSQKLNIIAESVELSN-HVPEYLTFDADKLEGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RVPERSE---LSAEINEQLIVEYYSR 200 >gi|298372562|ref|ZP_06982552.1| ribosomal protein S4 [Bacteroidetes oral taxon 274 str. F0058] gi|298275466|gb|EFI17017.1| ribosomal protein S4 [Bacteroidetes oral taxon 274 str. F0058] Length = 202 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE L+G K ++ +++ PG HGQ R K S + QLR KQK K Sbjct: 1 MARYIGPKSKISRKFGEPLFGSDKV-LSRKNFPPGQHGQARSRKKSEYAKQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A R +G T LI LE RLD +VYR PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFVKAQRQKGITGAILIQLLECRLDNVVYRLGMAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 ++VNG +NI SY K+GD+I V++K K + + EA LA + +Y + D M Sbjct: 119 IIVNGEVLNIPSYIVKQGDIIGVREKDKSMIVITEA--LAGHNHSKYPWLEWDKNLMAGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ IP +D+P + Q L+VE YS+ Sbjct: 177 FLHIPER-EDIPENI--QEQLIVELYSK 201 >gi|258512643|ref|YP_003186077.1| 30S ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479369|gb|ACV59688.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 208 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V+ R Y PG HGQ RK Y G+QLR KQK ++YYG + E +F ++EA R RG Sbjct: 30 KCAVDKRPYAPGQHGQGRKRTTEY-GMQLREKQKARRYYG-VLENQFERYYEEAARRRGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LESRLD +VYR F + ARQ V H H+ VNGR V+I S+ KEGDV+ V Sbjct: 88 TGETLLQLLESRLDNVVYRLGFAASRAEARQLVRHGHIQVNGRRVDIPSFLVKEGDVVSV 147 Query: 144 KQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ A + E ++L R +P ++ ++ +N A +R P+ ++ PV Q +VE Sbjct: 148 REKSRDNARLKELAELIPSRTIPAWLELDAENWTAKVLRRPAR-DEIDAPV--QEQQIVE 204 Query: 203 FYSR 206 FYSR Sbjct: 205 FYSR 208 >gi|313204943|ref|YP_004043600.1| SSU ribosomal protein s4p [Paludibacter propionicigenes WB4] gi|312444259|gb|ADQ80615.1| SSU ribosomal protein S4P [Paludibacter propionicigenes WB4] Length = 201 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G P + ++Y PG HGQ R+ K S +G+QLR KQK K Sbjct: 1 MARYIGPKSRIARKFGEAIFG-PDKVLAKKNYPPGQHGQGRRKKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+++++A R++G T L+ LESRLD IVYR F PT ARQ V+H+H Sbjct: 60 TYG-VLEKQFRNMYEKAQRTKGVTGEVLLQLLESRLDNIVYRLGFAPTRSGARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY + G VI V++K K + + + +I N ++ ++ Sbjct: 119 ITVDGKVVNIASYHVRAGQVIAVREKDKSMEVIAASLNGFNHSKYPWIEWNAASLSGVYL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP +D+P + Q L+VE YS+ Sbjct: 179 HIPER-EDIPENIKEQ--LIVELYSK 201 >gi|332042696|gb|EGI78896.1| ribosomal protein S4 [Lacinutrix algicola 5H-3-7-4] Length = 201 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKA-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++FK A + G T L+ ESRLD +V+R PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFRNMFKRATAAPGITGEVLLQLCESRLDNVVFRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY+ K GDV+ V++KSK L ++ E S +V E+I+ N + T+ Sbjct: 119 HITVNGELVNVPSYQLKAGDVVAVREKSKSLEAI-ERSLSNSSNVFEWITWNTETKQGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ ++ P + +VE YS+ Sbjct: 178 VSVPARIQ---IPENINEQFIVELYSK 201 >gi|291296964|ref|YP_003508362.1| 30S ribosomal protein S4 [Meiothermus ruber DSM 1279] gi|290471923|gb|ADD29342.1| ribosomal protein S4 [Meiothermus ruber DSM 1279] Length = 205 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 7/200 (3%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K+ R +G N+ K ++ R Y PG HGQ+RK +PS F ++LR KQK++ Y D+SE Sbjct: 10 KVARHLGVNIAETEKVQKYLDRRPYAPGQHGQKRKGRPSDFAVRLREKQKLRFIY-DVSE 68 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 +FR++F+EA R +G T + LESRLD +V+R T ARQFV H H+LVNG+ Sbjct: 69 TQFRNLFEEASRKKGVTGTVFLQLLESRLDNVVFRMGIASTRRQARQFVRHGHILVNGKR 128 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 VNI YR + GD I+V +K+K++ +++ + R ++ N D M F+R+P Sbjct: 129 VNIPGYRVRPGDEIKVSEKAKKIDFIVQNVERFKNRKSFPWLEFNADTMTGRFLRLPER- 187 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + PV Q LV+EFYSR Sbjct: 188 EMLSLPVNEQ--LVIEFYSR 205 >gi|117924179|ref|YP_864796.1| 30S ribosomal protein S4P [Magnetococcus sp. MC-1] gi|152060958|sp|A0L5Z7|RS4_MAGSM RecName: Full=30S ribosomal protein S4 gi|117607935|gb|ABK43390.1| SSU ribosomal protein S4P [Magnetococcus sp. MC-1] Length = 208 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 127/207 (61%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE++K + GE + K + R+Y PG HGQRR+ K S +G+ LR KQK+K+ Sbjct: 11 LCRREATKLFLK---GEKCYS-DKCAMERRNYVPGQHGQRRR-KVSDYGVHLREKQKVKR 65 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E +FR+++K+A+R +G T NL+ LE RLD +VYR + ARQ ++H+ Sbjct: 66 SYG-LLEAQFRTLYKKAERMKGVTGENLLQLLERRLDNVVYRLGLAASRTEARQIISHKT 124 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATF 179 +LVNG+ VN+ SY CK GDV+ V++KS+ QL + +R +P ++ V+ + +V TF Sbjct: 125 LLVNGKMVNVPSYLCKPGDVVAVREKSRGQLRIKGALASAMQRGLPSWVEVDAEKLVGTF 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP D+P NL+VE YS+ Sbjct: 185 RSIPER-SDLPAE--FNENLIVELYSK 208 >gi|126662239|ref|ZP_01733238.1| 30S ribosomal protein S4 [Flavobacteria bacterium BAL38] gi|126625618|gb|EAZ96307.1| 30S ribosomal protein S4 [Flavobacteria bacterium BAL38] Length = 201 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ R+Y PG HG +++ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKA-FEKRNYPPGQHGLAKKRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++FK+A + G T L+ E+RLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILEKQFRNLFKKASAASGVTGEILLQLCEARLDNVVYRMGVAPSRRAARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY K GD + V++KSK L ++ E S + V E+I+ N+D TF Sbjct: 119 HITVNGELVNVPSYHLKAGDKVAVREKSKSLEAI-ERSLASSSQVYEWITWNNDTKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE Y++ Sbjct: 178 VSVPQRLQ---IPENIKEQLIVELYNK 201 >gi|330722391|gb|EGH00239.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC2047] Length = 206 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 125/202 (61%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L+ + P++++ PG+HG RR S+ S +GLQLR KQK+++ YG + Sbjct: 10 KLSRREGTDLFLKSGVRPLDSKCKADTIPGVHGARR-SRLSDYGLQLREKQKVRRLYG-V 67 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+FR+ +KEA R G T NL+ LE+RLD +VYR F T ARQ V+H+ + VNG Sbjct: 68 LEKQFRNYYKEAARLSGATGENLLQLLETRLDNVVYRMGFGATRAEARQLVSHKSITVNG 127 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS 184 +VN+ SY+ K GDV+ V++K+K + A ++A +R +PE++ V+ M F IP Sbjct: 128 ETVNVPSYKIKAGDVVAVREKAKNQLRIKSALEVAGQRGMPEWVQVDAGKMSGEFKSIPE 187 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + P + NL+VE YS+ Sbjct: 188 RGE---LPAEINENLIVELYSK 206 >gi|229496321|ref|ZP_04390041.1| ribosomal protein S4 [Porphyromonas endodontalis ATCC 35406] gi|229316899|gb|EEN82812.1| ribosomal protein S4 [Porphyromonas endodontalis ATCC 35406] Length = 209 Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR GE ++G P ++ ++Y PG HG+ R+ K S +G+QL KQK K Sbjct: 9 MARYTGPKSKVARRFGEPIFG-PDKVLSKKNYPPGQHGEGRRRKSSEYGIQLAEKQKAKY 67 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++FK A RS+G T L+ LE RLD IVYR PT AARQ V+HRH Sbjct: 68 TYG-VLERQFRNLFKAAQRSKGVTGEVLLQLLECRLDNIVYRLGIAPTRAAARQIVSHRH 126 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VNI SY K G +I V+++ K + + A+ LA + +Y + DN M Sbjct: 127 ITVDGNVVNIPSYSVKPGQIIAVRERDKSMEVI--ANSLAGFNHGKYSWIEWDNSSMSGK 184 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ IP D+P + Q L+VE YS+ Sbjct: 185 FLNIPQR-ADIPENIKEQ--LIVELYSK 209 >gi|194017389|ref|ZP_03056001.1| ribosomal protein S4 [Bacillus pumilus ATCC 7061] gi|194011257|gb|EDW20827.1| ribosomal protein S4 [Bacillus pumilus ATCC 7061] Length = 200 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +AD+ G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKADKLPGKQGENFMILLETRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I S+ K G I +++KS+ LA V E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSFSVKPGQTIALREKSQNLAVVKESVEV-NSFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---ISEQLIVEFYSR 200 >gi|294501546|ref|YP_003565246.1| ribosomal protein S4 [Bacillus megaterium QM B1551] gi|295706894|ref|YP_003599969.1| 30S ribosomal protein S4 [Bacillus megaterium DSM 319] gi|294351483|gb|ADE71812.1| ribosomal protein S4 [Bacillus megaterium QM B1551] gi|294804553|gb|ADF41619.1| 30S ribosomal protein S4 [Bacillus megaterium DSM 319] Length = 200 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGLSLSGTGKE-LEKRPYAPGPHGPGQRKKISEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VTERQFRNLFVAAGKLTGKHGENFMILLEARLDNLVYRMGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SYR + G VI V++KS+ L+ V EA ++ VP+Y++V+ + + TF Sbjct: 119 VLVDGKRVDIPSYRVQPGQVIGVREKSRNLSIVKEALEV-NNFVPDYLTVDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERSE---LSAEINEALIVEFYSR 200 >gi|26454648|sp|P81288|RS4_BACST RecName: Full=30S ribosomal protein S4; AltName: Full=BS5 Length = 200 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SYR K G I V++KS+ L + EA + A +P+Y+S + + M T+ Sbjct: 119 IIVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|78776527|ref|YP_392842.1| 30S ribosomal protein S4 [Sulfurimonas denitrificans DSM 1251] gi|90101735|sp|Q30TS4|RS4_SULDN RecName: Full=30S ribosomal protein S4 gi|78497067|gb|ABB43607.1| SSU ribosomal protein S4P [Sulfurimonas denitrificans DSM 1251] Length = 208 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGE--NLWGR----PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G NL G KS + R Y PG HGQRRK K S +GLQL Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSALEKRPYAPGQHGQRRK-KVSEYGLQLNE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++F EA R G+T NL++ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRALFVEAKRREGNTGTNLVTLIEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H+LV+G ++I SYR + G IE+++ SK + ++ A +L + + ++ ++ D Sbjct: 119 LVTHGHLLVDGAKLDIPSYRVRPGQKIEIRESSKNNSQIVRALELTNQTGLAPWVDIDAD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P ++V PV + L+VE YS+ Sbjct: 179 KKFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|225175647|ref|ZP_03729641.1| ribosomal protein S4 [Dethiobacter alkaliphilus AHT 1] gi|225168976|gb|EEG77776.1| ribosomal protein S4 [Dethiobacter alkaliphilus AHT 1] Length = 209 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 7/185 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V+ R+Y PG HGQRR+ K S +GLQLR KQK ++ YG + E +F FKEADR +G Sbjct: 30 KCAVDRRAYAPGQHGQRRRGKVSEYGLQLREKQKARRTYG-VLESQFHKYFKEADRRKGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LESRLD +VYR F + ARQ V H H VNGR V+I SY+ + DV+ V Sbjct: 89 TGENLLQILESRLDNVVYRMGFALSRPEARQLVKHGHFTVNGRKVDIPSYQVRPDDVVAV 148 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 ++ S+ + ++L + E+++V+ +N+ +R+P+ + D+P + +L+V Sbjct: 149 REASRDKGRFKDLAELMRTQGTMEWVNVDRENLAGKVLRLPTREEIDIP----IAEHLIV 204 Query: 202 EFYSR 206 E YSR Sbjct: 205 ELYSR 209 >gi|88803725|ref|ZP_01119249.1| 30S ribosomal protein S4 [Polaribacter irgensii 23-P] gi|88780458|gb|EAR11639.1| 30S ribosomal protein S4 [Polaribacter irgensii 23-P] Length = 201 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ R+Y PG HG RR+ K S + QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKN-FEKRNYPPGQHGNARRRGKKSEYATQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F ++FK+A S+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILERQFSNLFKKASASQGITGEILVQLCESRLDNVVYRMGVSTSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY EGDV+ V++KSK + ++ E S + +V E+++ N D TF Sbjct: 119 HITVNGEIVNVPSYNLLEGDVVAVREKSKSIQAI-EDSLASNSNVYEWLTWNSDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V++P+ L+ P ++ L+VE YS+ Sbjct: 178 VKVPARLQ---IPENIKEQLIVELYSK 201 >gi|254994789|ref|ZP_05276979.1| 30S ribosomal protein S4 [Anaplasma marginale str. Mississippi] Length = 165 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 72/147 (48%), Positives = 93/147 (63%), Gaps = 1/147 (0%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K++ RR+G NLWGR K PV TR+Y PG HG K S FG Q A QK K YY +S Sbjct: 7 KYRASRRLGVNLWGRSKDPVATRNYPPGQHGSMGYKKLSSFGRQFAAHQKFKCYYA-MSS 65 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R+ F A +GDT NL+ LESRL +VY A FVPT+F+ARQ V+H+HV VNG+ Sbjct: 66 KQLRNTFLRAYNRKGDTGDNLVGALESRLAVVVYSAGFVPTVFSARQLVSHKHVTVNGKV 125 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVL 154 VNI S+ K GDV++++ + L Sbjct: 126 VNIPSFSVKPGDVVQIRDGQQSFLWCL 152 >gi|163859246|ref|YP_001633544.1| 30S ribosomal protein S4 [Bordetella petrii DSM 12804] gi|226697810|sp|A9IHR7|RS4_BORPD RecName: Full=30S ribosomal protein S4 gi|163262974|emb|CAP45277.1| 30S ribosomal protein S4 [Bordetella petrii] Length = 207 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR + VNG + +I S K GDVI V++K+K+ + EA LA +P+++ V+ Sbjct: 117 QLVSHRAIEVNGHTADIASLIVKAGDVITVREKAKKQGRIREALDLASSIGIPQWVEVDT 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M TF +P DV + ++VVE YSR Sbjct: 177 NKMAGTFKSMPDR-ADVARDI--NESMVVELYSR 207 >gi|15615771|ref|NP_244075.1| 30S ribosomal protein S4 [Bacillus halodurans C-125] gi|26399508|sp|Q9K7Z8|RS4_BACHD RecName: Full=30S ribosomal protein S4 gi|10175832|dbj|BAB06928.1| 30S ribosomal protein S4 [Bacillus halodurans C-125] Length = 200 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR IF +A + G N + LESRLD +VYR T AARQ VNH H Sbjct: 60 MYG-VNERQFRRIFNDAGKMAGIHGENFMILLESRLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 + V+G+ V+I SYR K G VI V++KS+ L + E+ L D VP Y++ + D + T+ Sbjct: 119 ITVDGQRVDIPSYRVKPGQVIGVREKSRNLQVIKES--LESNDFVPAYVTFDADKLEGTY 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VEFYSR Sbjct: 177 SRFPERSE---LPAEITEALIVEFYSR 200 >gi|313677145|ref|YP_004055141.1| SSU ribosomal protein s4p [Marivirga tractuosa DSM 4126] gi|312943843|gb|ADR23033.1| SSU ribosomal protein S4P [Marivirga tractuosa DSM 4126] Length = 201 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K KI RR E ++G K+ ++ ++Y PG HG+ R+ K S + +QL KQK K Sbjct: 1 MARYKGPKSKIARRFNEPIFGASKA-LSKKAYPPGQHGRGRRRKQSEYAIQLMEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F ++F +A R +G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFANLFDKASRKKGITGEVLLQLLESRLDNVVFRLGIAPTRRAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG +NI SY+ KE DVI V++KSK L ++ ++ ++ + +M FV Sbjct: 119 ILVNGEILNIPSYQVKESDVIGVREKSKSLEAITDSLSSNTASKYSWLEFDKSSMSGKFV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP +D+P + Q L+VE YS+ Sbjct: 179 NIPQR-EDIPENINEQ--LIVELYSK 201 >gi|254468445|ref|ZP_05081851.1| ribosomal protein S4 [beta proteobacterium KB13] gi|207087255|gb|EDZ64538.1| ribosomal protein S4 [beta proteobacterium KB13] Length = 209 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K RR GE L+ + K + RSY PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCKQCRREGEKLFLKGEKCFTDKCGIEKRSYPPGQHGQRRGGRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++K YG I EK+FRS + EADR +G T NL+ LESRLD +VYR + +RQ Sbjct: 61 KQKLRKIYG-ILEKQFRSYYAEADRLKGVTGENLLQLLESRLDNVVYRMGIGVSRSESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H + VNG VNI SY+ K GD + V + SK + A++ A ER PE++ V+ Sbjct: 120 LVRHNSITVNGNRVNIPSYQVKPGDQVAVAEASKNQLRIKAATEAADERGFPEWVEVDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P P I + +L+VE YS+ Sbjct: 180 KLSGTFKNKPQR-DDLP-PTINE-SLIVELYSK 209 >gi|218289979|ref|ZP_03494156.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius LAA1] gi|218239964|gb|EED07151.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius LAA1] Length = 208 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V+ R Y PG HGQ RK Y G+QLR KQK ++YYG + E +F ++EA R RG Sbjct: 30 KCAVDKRPYAPGQHGQGRKRTTEY-GMQLREKQKARRYYG-VLENQFERYYEEAARRRGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LESRLD +VYR F + ARQ V H H+ VNGR V+I S+ KEGDV+ V Sbjct: 88 TGETLLQLLESRLDNVVYRLGFAASRAEARQLVRHGHIQVNGRRVDIPSFLVKEGDVVSV 147 Query: 144 KQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ A + E ++L R +P ++ ++ +N A +R P+ ++ PV Q +VE Sbjct: 148 REKSRDNARLKELAELIPSRTIPAWLELDVENWTAKVLRRPAR-DEIDAPV--QEQQIVE 204 Query: 203 FYSR 206 FYSR Sbjct: 205 FYSR 208 >gi|325294423|ref|YP_004280937.1| ribosomal protein S4 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064871|gb|ADY72878.1| ribosomal protein S4 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 208 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + K +I RR+G N++ + KS ++ R Y PG HG+ R+ K SY+G QL Sbjct: 1 MGRYTGPKWRIARRLGVNIYVGEEKSQKGKSILDRRPYPPGQHGRSRR-KISYYGRQLME 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG I E +F+ ++ A+R RG T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKVKYYYG-IREGQFKRFYEMAERMRGQTGENLLKLLESRLDNVVYRLGFGKSHRHARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+LVNG+ V+ SY K GD++EVK+KS+++ + E +LA+ R +P ++ ++ + Sbjct: 119 LVVHGHILVNGKKVDRPSYLVKPGDIVEVKEKSREIPQIKEGIELAQRRGIPSWLELDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N V+ + +++ PV + +L+VE YS+ Sbjct: 179 NFKGV-VKAEPTREEIEIPV--EEHLIVELYSK 208 >gi|222099994|ref|YP_002534562.1| 30S ribosomal protein S4 [Thermotoga neapolitana DSM 4359] gi|254764618|sp|B9K8B3|RS4_THENN RecName: Full=30S ribosomal protein S4 gi|221572384|gb|ACM23196.1| 30S ribosomal protein S4 [Thermotoga neapolitana DSM 4359] Length = 209 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQRR SK + +G+QLRAKQ +K+ YG I E++F ++A + GD Sbjct: 30 KCAFDRRPYAPGQHGQRR-SKLTQYGIQLRAKQTVKRIYG-ILERQFERYVEKAMKRAGD 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NLI LE+RLD +VYR F ARQ VNH H LVNG+ V+I SY + DV+EV Sbjct: 88 TRENLIQLLEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVDIPSYLLRPNDVVEV 147 Query: 144 KQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ + + +A + ER+ +I V+ DN TF+R P + PV +Q V+E Sbjct: 148 REKSRDIEVIKKAIEFNRERNTVPWIEVDFDNYKGTFLRYPRLEEVTDLPVDLQT--VIE 205 Query: 203 FYSR 206 FYSR Sbjct: 206 FYSR 209 >gi|308177512|ref|YP_003916918.1| 30S ribosomal protein S20 [Arthrobacter arilaitensis Re117] gi|307744975|emb|CBT75947.1| 30S ribosomal protein S20 [Arthrobacter arilaitensis Re117] Length = 207 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/202 (40%), Positives = 122/202 (60%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + + + R YGPG HG+ RK + S + ++LR KQ+++ YG I E + Sbjct: 11 RLSRALGLALTPKAEKYMERRPYGPGQHGRARKKQDSDYAVRLREKQRLRAQYG-IREAQ 69 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S FKEA R G+T NL++ LESRLD +V RA F TI ARQ V HRH+LVNG+ V+ Sbjct: 70 MLSAFKEAKRLGGETGGNLLALLESRLDALVLRAGFARTIQQARQMVVHRHILVNGQRVD 129 Query: 130 IGSYRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 S++ + G +I V +KS+ Q+A+ E S++ P Y+ V + + ATF+R P Sbjct: 130 RPSFKVQPGQLIHVHEKSEKMVPFQMAAAGEHSKVLP-AAPAYLDVKLEALQATFLRAPE 188 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + PV + NLVVE+Y+R Sbjct: 189 RAE---IPVTCEENLVVEYYAR 207 >gi|254483410|ref|ZP_05096639.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2148] gi|214036284|gb|EEB76962.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2148] Length = 206 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S + PG HG RR + S +G+QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCKAEAI-PGQHGARR-GRLSDYGVQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRSESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V H+ ++VNG+ VNI SY+ K GDV+ +++K+K+ V A L A+R PE+I VN D Sbjct: 118 VAHKSIMVNGQVVNIASYQVKAGDVVALREKAKKQLRVQSALALAAQRGEPEWIEVNADK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF +P +D+ + NL+VE YS+ Sbjct: 178 LEGTFKSVPDR-QDLSSEI--NENLIVELYSK 206 >gi|83648828|ref|YP_437263.1| ribosomal protein S4 [Hahella chejuensis KCTC 2396] gi|123530606|sp|Q2S936|RS4_HAHCH RecName: Full=30S ribosomal protein S4 gi|83636871|gb|ABC32838.1| ribosomal protein S4 [Hahella chejuensis KCTC 2396] Length = 206 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ R PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCNMETAPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARIKGATGENLLQLLERRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ +LVNG++VNI SY+ K GDV+ +++KSK + + +L A+R E+I V+ M Sbjct: 119 SHKAILVNGKAVNIPSYQVKPGDVVSIREKSKNQLRIKGSLELAAQRATLEWIEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P P + NL+VE YS+ Sbjct: 179 SGTFKSVPERTDLSPD---INENLIVELYSK 206 >gi|297567257|ref|YP_003686229.1| 30S ribosomal protein S4 [Meiothermus silvanus DSM 9946] gi|296851706|gb|ADH64721.1| ribosomal protein S4 [Meiothermus silvanus DSM 9946] Length = 205 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 118/200 (59%), Gaps = 7/200 (3%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 KI RR+G N+ K ++ R Y PG HGQ+R +PS + ++LR KQK++ Y D+ E Sbjct: 10 KIARRLGVNIAETEKVQKYLDRRPYAPGQHGQKRARRPSDYAVRLREKQKLRFIY-DMGE 68 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + FR++F+EA + +G T + LESRLD +V+R T ARQFV H H+LVNG+ Sbjct: 69 RSFRNLFEEASKKKGVTGTVFLQLLESRLDNVVFRLGIASTRRQARQFVRHGHILVNGKR 128 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 VNI YR K+GD I V +K++ + + E + R ++ + M F+R+P Sbjct: 129 VNIAGYRVKQGDTIAVSKKAQDIPFIKENIERFKNRKTFRWLEFDPTTMSGKFLRLPDR- 187 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 +D+ PV NLV+EFYSR Sbjct: 188 EDLALPV--NENLVIEFYSR 205 >gi|51894183|ref|YP_076874.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] gi|81691984|sp|Q67JX0|RS4A_SYMTH RecName: Full=30S ribosomal protein S4 A gi|51857872|dbj|BAD42030.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] Length = 207 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 6/191 (3%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 GE + K P+ R+ PG HG R+ KP+ + +QLR KQK ++YYG + E++F F+ Sbjct: 23 GEKCYS-DKCPIVKRATPPGQHGASRR-KPTEYAIQLREKQKARRYYG-VLERQFERYFE 79 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A R +G T L+ LE RLD +VYR F + ARQ V H H+ VNGR VNI SY Sbjct: 80 MASRKKGVTGEVLLQTLERRLDNVVYRMGFAASRAEARQIVKHSHIEVNGRKVNIPSYLV 139 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIM 195 +EGDV+ V++ S++ + E + A R VP ++SV+ + + T +R+P+ ++ PV Sbjct: 140 REGDVVAVRESSREHKRIKELAAAATRTVPAWLSVDPEALRGTVLRLPNR-DEIDTPV-- 196 Query: 196 QPNLVVEFYSR 206 Q L+VEFYSR Sbjct: 197 QEQLIVEFYSR 207 >gi|184159574|ref|YP_001847913.1| 30S ribosomal protein S4 [Acinetobacter baumannii ACICU] gi|226697787|sp|B2HZ84|RS4_ACIBC RecName: Full=30S ribosomal protein S4 gi|183211168|gb|ACC58566.1| 30S ribosomal protein S4 [Acinetobacter baumannii ACICU] Length = 208 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKSGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|325287073|ref|YP_004262863.1| 30S ribosomal protein S4 [Cellulophaga lytica DSM 7489] gi|324322527|gb|ADY29992.1| ribosomal protein S4 [Cellulophaga lytica DSM 7489] Length = 201 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/207 (42%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FEKKNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F +A+ S+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YSYG-ILEKQFRNLFAKANSSKGVTGEVLLQLCESRLDNVVYRMGISNSRRGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L+++ +A R V E+I+ N + T+ Sbjct: 119 HITVNGELVNIPSYSLKPGDVVGVREKSKSLSAIQDALAANSR-VYEWITWNSEKKEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP + V P ++ L+VE YS+ Sbjct: 178 VSIP---ERVQIPENIKEQLIVELYSK 201 >gi|169632374|ref|YP_001706110.1| 30S ribosomal protein S4 [Acinetobacter baumannii SDF] gi|169794618|ref|YP_001712411.1| 30S ribosomal protein S4 [Acinetobacter baumannii AYE] gi|213158811|ref|YP_002320809.1| ribosomal protein S4 [Acinetobacter baumannii AB0057] gi|215482207|ref|YP_002324389.1| ribosomal protein S4 [Acinetobacter baumannii AB307-0294] gi|239503210|ref|ZP_04662520.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB900] gi|260557051|ref|ZP_05829268.1| ribosomal protein S4 [Acinetobacter baumannii ATCC 19606] gi|293610848|ref|ZP_06693148.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|294839723|ref|ZP_06784406.1| 30S ribosomal protein S4 [Acinetobacter sp. 6013113] gi|294842677|ref|ZP_06787360.1| 30S ribosomal protein S4 [Acinetobacter sp. 6014059] gi|294860401|ref|ZP_06798170.1| 30S ribosomal protein S4 [Acinetobacter sp. 6013150] gi|301345034|ref|ZP_07225775.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB056] gi|301512035|ref|ZP_07237272.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB058] gi|301595208|ref|ZP_07240216.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB059] gi|152060924|sp|A3M960|RS4_ACIBT RecName: Full=30S ribosomal protein S4 gi|226697785|sp|B7GW26|RS4_ACIB3 RecName: Full=30S ribosomal protein S4 gi|226697786|sp|B7IA15|RS4_ACIB5 RecName: Full=30S ribosomal protein S4 gi|226697788|sp|B0VQU2|RS4_ACIBS RecName: Full=30S ribosomal protein S4 gi|226697789|sp|B0V6U6|RS4_ACIBY RecName: Full=30S ribosomal protein S4 gi|169147545|emb|CAM85406.1| 30S ribosomal protein S4 [Acinetobacter baumannii AYE] gi|169151166|emb|CAO99838.1| 30S ribosomal protein S4 [Acinetobacter baumannii] gi|193078463|gb|ABO13454.2| 30S ribosomal protein S4 [Acinetobacter baumannii ATCC 17978] gi|213057971|gb|ACJ42873.1| ribosomal protein S4 [Acinetobacter baumannii AB0057] gi|213986640|gb|ACJ56939.1| ribosomal protein S4 [Acinetobacter baumannii AB307-0294] gi|260409657|gb|EEX02958.1| ribosomal protein S4 [Acinetobacter baumannii ATCC 19606] gi|292827192|gb|EFF85557.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|322509484|gb|ADX04938.1| 30S ribosomal protein S4 [Acinetobacter baumannii 1656-2] gi|323519505|gb|ADX93886.1| 30S ribosomal protein S4 [Acinetobacter baumannii TCDC-AB0715] gi|325123580|gb|ADY83103.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus PHEA-2] Length = 208 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|299768690|ref|YP_003730716.1| 30S ribosomal protein S4 [Acinetobacter sp. DR1] gi|298698778|gb|ADI89343.1| 30S ribosomal protein S4 [Acinetobacter sp. DR1] Length = 208 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---ADLPAEINESLIVELYSK 208 >gi|325282667|ref|YP_004255208.1| ribosomal protein S4 [Deinococcus proteolyticus MRP] gi|324314476|gb|ADY25591.1| ribosomal protein S4 [Deinococcus proteolyticus MRP] Length = 206 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 123/210 (58%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M + S K RR G NL K ++ R Y PG HGQRR + +PS + ++LR KQK Sbjct: 1 MGRFSGSIVKQSRREGINLAETEKVQKYLDRRPYAPGQHGQRRGRGRPSDYSVRLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + + YG ++EK+FR++F+EA R G + LE RLD +V+R F T ARQFV Sbjct: 61 LSRLYG-MNEKQFRNLFEEATRQPGVLGTVFLQLLERRLDNVVFRMGFASTRRQARQFVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE-YISVNHDNMV 176 H H+LVNG+ V+I SYR K GD I V +KS+ + V E + +R P ++ VN + Sbjct: 120 HGHILVNGKKVDIASYRVKIGDEITVAEKSRSMGFVQENMEAMKRRRPSPWLEVNAETFT 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P+ +D+ P+ N ++E+YSR Sbjct: 180 GTFNRLPAR-EDLALPI--NENFIIEYYSR 206 >gi|302344330|ref|YP_003808859.1| ribosomal protein S4 [Desulfarculus baarsii DSM 2075] gi|301640943|gb|ADK86265.1| ribosomal protein S4 [Desulfarculus baarsii DSM 2075] Length = 209 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 115/192 (59%), Gaps = 6/192 (3%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G+ +G K V R+Y PG HGQ R+ K S +G+QLR KQK+K+ YG ++E +FR +K Sbjct: 23 GDRCYG-DKCAVERRTYPPGQHGQGRRGKASDYGIQLREKQKVKRMYG-LAENQFRLTYK 80 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A G T HNL+ LE RLD +V+R F + ARQ+V H H VNG VNI S Sbjct: 81 RASSMHGVTGHNLLQLLERRLDNVVFRLGFANSRTQARQWVRHSHFTVNGHKVNIPSALV 140 Query: 136 KEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K GDV+ V Q S++L + EA + +A R +P ++ ++ ++ T +P+ +++ P Sbjct: 141 KAGDVVAVVQTSRELGQLKEAMEAVARRTIPGWLELDVKDLSGTVKALPTR-EELTMP-- 197 Query: 195 MQPNLVVEFYSR 206 MQ L+VE YSR Sbjct: 198 MQEQLIVELYSR 209 >gi|260549816|ref|ZP_05824032.1| ribosomal protein S4 [Acinetobacter sp. RUH2624] gi|260407066|gb|EEX00543.1| ribosomal protein S4 [Acinetobacter sp. RUH2624] Length = 208 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|325955022|ref|YP_004238682.1| ribosomal protein S4 [Weeksella virosa DSM 16922] gi|323437640|gb|ADX68104.1| ribosomal protein S4 [Weeksella virosa DSM 16922] Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 124/207 (59%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ G+ ++G KS + Y PG HG +R+SK S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGQTIFGDDKS-FEKKKYPPGQHGPNKRRSKKSEYAIQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F +++K+A+ S+G T L+ ESRLD +VYR PT AARQ V+H+ Sbjct: 60 YTYG-ILERQFENMYKKANASKGITGEVLLQLCESRLDNVVYRLGIAPTRSAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ KEGDV+ V++KSK L ++ ++ L R E++ N + TF Sbjct: 119 HITVNGNIVNIPSYQLKEGDVVAVREKSKSLQTIKDS--LHARREYEWLVWNDEQTSGTF 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P V P ++ L+VE YS+ Sbjct: 177 TKAPER---VQIPEDIKELLIVELYSK 200 >gi|94985941|ref|YP_605305.1| 30S ribosomal protein S4 [Deinococcus geothermalis DSM 11300] gi|152060945|sp|Q1IX98|RS4_DEIGD RecName: Full=30S ribosomal protein S4 gi|94556222|gb|ABF46136.1| ribosomal protein S4 [Deinococcus geothermalis DSM 11300] Length = 206 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M + S K+ RR G NL K ++ R Y PG HGQRR + +PS + ++LR KQK Sbjct: 1 MGRFRGSITKLSRREGINLAETEKVQKYLDRRPYAPGQHGQRRGRGRPSDYSVRLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + + YG ++EK+FR++F+EA G T + LE RLD +V+R F T ARQFV Sbjct: 61 LARLYG-VNEKQFRNLFEEAANVPGVTGTVFLQLLERRLDNVVFRMGFASTRRQARQFVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMV 176 H H+LVNG+ V+I SYR + GD I V + S+ + + E + + R V +I +N D Sbjct: 120 HGHILVNGKRVDIPSYRVRIGDEISVAEGSRSMGFIQENMEAQKRRRVSPWIELNPDTFT 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TFVR+P+ +D+ P+ N ++E+YSR Sbjct: 180 GTFVRLPAR-EDLALPI--NENFIIEYYSR 206 >gi|261250393|ref|ZP_05942968.1| SSU ribosomal protein S4p (S9e) [Vibrio orientalis CIP 102891] gi|260938962|gb|EEX94949.1| SSU ribosomal protein S4p (S9e) [Vibrio orientalis CIP 102891] Length = 206 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 131/211 (62%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VNI S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATF R+P D+ + Q L+VE YS+ Sbjct: 179 EATFKRMPER-SDLSADINEQ--LIVELYSK 206 >gi|150025382|ref|YP_001296208.1| 30S ribosomal protein S4 [Flavobacterium psychrophilum JIP02/86] gi|172048611|sp|A6GZ74|RS4_FLAPJ RecName: Full=30S ribosomal protein S4 gi|149771923|emb|CAL43397.1| 30S ribosomal protein S4 [Flavobacterium psychrophilum JIP02/86] Length = 201 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ +I R+ GE ++G KS R+Y PG HG +++ K S F +QL KQK K Sbjct: 1 MARYTGPSTRIARKFGEAIFGDDKS-FEKRNYPPGQHGMAKKRGKKSEFAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR +FK+A S+G T L+ E+RLD +VYR PT AARQ V+HR Sbjct: 60 YSYG-ILEKQFRGLFKKAAASKGVTGEILLQLCEARLDNVVYRMGIAPTRRAARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV VNG VN+ SY K GD + V++KSK L ++ + S V E+I+ N M TF Sbjct: 119 HVTVNGELVNVPSYHLKPGDKVAVREKSKSLEAI-DRSLSNSSHVYEWITWNTAQMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ L+ P ++ L+VE Y++ Sbjct: 178 VSVPARLQ---IPENIKEQLIVELYNK 201 >gi|172049036|sp|A6LEG6|RS4_PARD8 RecName: Full=30S ribosomal protein S4 Length = 201 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V++KSK + + +A +I + +M + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSQYPWIEWDQSSMSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P + Q L+VE YS+ Sbjct: 179 HLPER-ADIPENIKEQ--LIVELYSK 201 >gi|255014789|ref|ZP_05286915.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_7] gi|256841040|ref|ZP_05546547.1| ribosomal protein S4 [Parabacteroides sp. D13] gi|298375808|ref|ZP_06985764.1| ribosomal protein S4 [Bacteroides sp. 3_1_19] gi|256736883|gb|EEU50210.1| ribosomal protein S4 [Parabacteroides sp. D13] gi|298266845|gb|EFI08502.1| ribosomal protein S4 [Bacteroides sp. 3_1_19] Length = 201 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V++KSK + + +A +I + +M + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSKYPWIEWDQSSMSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P + Q L+VE YS+ Sbjct: 179 HLPER-ADIPENIKEQ--LIVELYSK 201 >gi|226953895|ref|ZP_03824359.1| 30S ribosomal protein S4 [Acinetobacter sp. ATCC 27244] gi|294651610|ref|ZP_06728914.1| 30S ribosomal protein S4 [Acinetobacter haemolyticus ATCC 19194] gi|226835378|gb|EEH67761.1| 30S ribosomal protein S4 [Acinetobacter sp. ATCC 27244] gi|292822459|gb|EFF81358.1| 30S ribosomal protein S4 [Acinetobacter haemolyticus ATCC 19194] Length = 208 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSY--GPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHNKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRSEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|237654187|ref|YP_002890501.1| 30S ribosomal protein S4 [Thauera sp. MZ1T] gi|237625434|gb|ACR02124.1| ribosomal protein S4 [Thauera sp. MZ1T] Length = 203 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/205 (41%), Positives = 126/205 (61%), Gaps = 5/205 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ R +G L G + P+ R++ PG HG+R + K S FG+QL KQK++ Sbjct: 1 MSRYTGPRLKVMRALGAELPGLSRKPLGERNHPPGQHGRRPRRK-SGFGVQLIEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+ + +F+EA R RG T L+ LE RLD V+RA F PT AARQ V H+H Sbjct: 60 NYG-LGEKQIQRLFREAKRDRGPTGDKLLELLERRLDNFVFRAGFAPTAVAARQLVRHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VL+NGR+VNI S R + GD I++ ++++ + V+EA PE++ + VAT Sbjct: 119 VLLNGRAVNIPSIRIRPGDRIQLTERARCIPVVVEALAEPALTRPEWLVFDEAAFVATMT 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R PS +VP+PV +Q VVE+Y+ Sbjct: 179 RTPSP-DEVPFPVDVQ--QVVEYYA 200 >gi|319938287|ref|ZP_08012684.1| 30S ribosomal protein S4 [Coprobacillus sp. 29_1] gi|319806580|gb|EFW03238.1| 30S ribosomal protein S4 [Coprobacillus sp. 29_1] Length = 201 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K RR+G + K ++ R Y PG HGQ+RK KP+ +GLQL KQK++ Sbjct: 1 MARYTGPQWKKSRRLGFSTLETGKE-LSKRPYAPGQHGQKRK-KPTEYGLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR+ F A + G T +N LE+RLD +VYR F T ARQ VNH H Sbjct: 59 MYG-VNEKQFRNTFFRASKMDGITGYNFFCLLETRLDNVVYRLGFATTRRQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +L+NG +I S + K GDV+ VK+KSK L +++ S ++ VP ++ V+ D M F+ Sbjct: 118 ILLNGVKTDIASCQVKVGDVVAVKEKSKSL-EIIKTSLASQNHVPGFVEVDADKMEGKFI 176 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L + +L+VE+Y+R Sbjct: 177 RLPERSELNQE-----INESLIVEYYNR 199 >gi|121534659|ref|ZP_01666480.1| ribosomal protein S4 [Thermosinus carboxydivorans Nor1] gi|121306679|gb|EAX47600.1| ribosomal protein S4 [Thermosinus carboxydivorans Nor1] Length = 208 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 113/185 (61%), Gaps = 8/185 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P + R Y PG HGQ RK K S +GLQLR KQK ++ YG I E +FR+ F++ADR +G Sbjct: 30 KCPFSRRGYAPGQHGQARK-KLSEYGLQLREKQKARRIYG-ILEGQFRNYFEKADRQKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR ARQ V H H VNGR V+I S++ K GDVI+V Sbjct: 88 TGENLLIMLERRLDNVVYRLGLAANRTQARQLVRHGHFTVNGRRVDIPSFQVKVGDVIQV 147 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 ++ SK E A LA + VP ++ ++ ++M VR P+ + DVP +Q +L+V Sbjct: 148 RESSKDSPLFKEIAEGLAHKTVPAWLELSANDMSGKVVRYPTREEIDVP----IQEHLIV 203 Query: 202 EFYSR 206 E YSR Sbjct: 204 ELYSR 208 >gi|222823138|ref|YP_002574711.1| 30S ribosomal protein S4 [Campylobacter lari RM2100] gi|254764576|sp|B9KEH5|RS4_CAMLR RecName: Full=30S ribosomal protein S4 gi|222538359|gb|ACM63460.1| 30S ribosomal protein S4 [Campylobacter lari RM2100] Length = 208 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQR K+K S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLAMKGERRLAGKSALDKRPYAPGQHGQR-KAKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARKDGNTGALLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G IEV +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEAGQKIEVIEKSKNNPQISRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVIIPV--EERYIVELYSK 208 >gi|149181086|ref|ZP_01859586.1| 30S ribosomal protein S4 [Bacillus sp. SG-1] gi|148851173|gb|EDL65323.1| 30S ribosomal protein S4 [Bacillus sp. SG-1] Length = 200 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKISEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + +G N ++ LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VTERQFRNLFDRAGKMQGKHGENFMALLESRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G V+I SYR + G I V++KS+ L V EA ++ VP++++ + D + +F Sbjct: 119 VTVDGSRVDIPSYRLQAGQTIGVREKSRNLNIVKEALEVNS-FVPDFLTFDADKLEGSFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|171060594|ref|YP_001792943.1| 30S ribosomal protein S4 [Leptothrix cholodnii SP-6] gi|226699083|sp|B1Y7N0|RS4_LEPCP RecName: Full=30S ribosomal protein S4 gi|170778039|gb|ACB36178.1| ribosomal protein S4 [Leptothrix cholodnii SP-6] Length = 207 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/211 (42%), Positives = 131/211 (62%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ +S PG HG+ S+ S FGLQLR KQ Sbjct: 1 MARYLGPKAKLARREGTDLYLKSARRSISDKSKFESKPGQHGRTSGSRTSDFGLQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + EK+FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLEKQFRRYFAEADRRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ V VNG+SVNI SY K GDVI V++KSK+ +++A +LA+ +P ++SV+ M Sbjct: 120 SHKAVTVNGQSVNIPSYLVKAGDVISVREKSKKQLRIIDALKLADSIGLPAWVSVDLTKM 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F + P +D + + +L+VE YSR Sbjct: 180 EGIFKKAPD--RD-EFGAEINESLIVELYSR 207 >gi|91775227|ref|YP_544983.1| 30S ribosomal protein S4 [Methylobacillus flagellatus KT] gi|91775371|ref|YP_545127.1| 30S ribosomal protein S4 [Methylobacillus flagellatus KT] gi|123451995|sp|Q1H2K1|RS4_METFK RecName: Full=30S ribosomal protein S4 gi|91709214|gb|ABE49142.1| SSU ribosomal protein S4P [Methylobacillus flagellatus KT] gi|91709358|gb|ABE49286.1| SSU ribosomal protein S4P [Methylobacillus flagellatus KT] Length = 205 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 MS+ + K+ R +G +L G + + R PG HG + + K S FG++L+ KQK++ Sbjct: 1 MSRFTGPRLKVMRALGIDLPGLSRKTIEARPTPPGQHGAKNTRRKKSDFGVKLQEKQKLR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+ R + +A + + T L+ LE RLD +V+RA F PTI AARQ V HR Sbjct: 61 FNYG-LSEKQLRRLMVDARKGKSPTGETLLQLLERRLDNVVFRAGFAPTIAAARQLVTHR 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV++NG+SVNI S R + GD I +K S +L V+E PE+IS + A Sbjct: 120 HVMLNGKSVNIPSIRVRVGDEISLKASSTKLPIVVETLANPPLTRPEWISWAEQSQQAKV 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +P++ +DVP+PV +Q VVE+Y+ Sbjct: 180 AHLPAA-EDVPFPVDVQ--QVVEYYA 202 >gi|154174170|ref|YP_001409132.1| 30S ribosomal protein S4 [Campylobacter curvus 525.92] gi|171769259|sp|A7H0Z0|RS4_CAMC5 RecName: Full=30S ribosomal protein S4 gi|112802255|gb|EAT99599.1| ribosomal protein S4 [Campylobacter curvus 525.92] Length = 208 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYTGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRR-AKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FR +F+EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G +EV +KSK ++ A L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEPGSKVEVIEKSKNNPQIVRAIDLTAQTGIVGWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V P+ + +VE YS+ Sbjct: 179 KKFGIFTRNPER-EEVIIPI--EERFIVELYSK 208 >gi|74316447|ref|YP_314187.1| 30S ribosomal protein S4 [Thiobacillus denitrificans ATCC 25259] gi|90101734|sp|Q3SLM5|RS4_THIDA RecName: Full=30S ribosomal protein S4 gi|74055942|gb|AAZ96382.1| ribosomal protein S4 [Thiobacillus denitrificans ATCC 25259] Length = 209 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQ+ ++ S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRAYAPGQHGQKSGARLSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR +K AD +G T NL+S LESRLD++ YR F + ARQ Sbjct: 61 KQKIRRIYG-VLEGQFRLTYKRADSRKGVTGENLLSMLESRLDSVCYRMGFGASRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHD 173 V H ++VNGR VNI SY+ + GDV+EV +KSK QL A A R PE+I V+ Sbjct: 120 IVRHNGIVVNGRRVNIPSYQVRPGDVVEVAEKSKAQLRIKAAADATATRGYPEWIEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T+ P + P + +LVVE YS+ Sbjct: 180 ALKGTYKAHP---QRSELPSTINESLVVELYSK 209 >gi|319892767|ref|YP_004149642.1| SSU ribosomal protein S4p (S9e) [Staphylococcus pseudintermedius HKU10-03] gi|317162463|gb|ADV06006.1| SSU ribosomal protein S4p (S9e) [Staphylococcus pseudintermedius HKU10-03] gi|323464199|gb|ADX76352.1| ribosomal protein S4 [Staphylococcus pseudintermedius ED99] Length = 200 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K ++ R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSSWKKSRRLGISLSGTGKE-LDKRPYAPGQHGPTQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A + G N + L SRLD IVY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFQTAGKQGGVHGENFMILLASRLDAIVYALGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G+ V+I SY K G V+ V++KS++LA ++E S VP+Y+ + DN+ TFV Sbjct: 119 VEVDGKRVDIPSYTLKPGQVVTVREKSRKLA-IIEESVEINNFVPDYLDFDADNLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|90416840|ref|ZP_01224769.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2207] gi|90331187|gb|EAS46431.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2207] Length = 206 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 124/202 (61%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L+ RP PG HGQRR + S +G+QLR KQK+++ YG + Sbjct: 10 KLSRREGTDLFLKSGVRPLESKCRADSAPGQHGQRR-GRLSDYGVQLREKQKVRRIYG-V 67 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+FR+ +++A R +G+T NL++ LE RLD +VYR F T +RQ V H ++VNG Sbjct: 68 LEKQFRNYYRDAARQKGNTGENLLTLLERRLDNVVYRMGFGATRAESRQLVAHNSIVVNG 127 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS 184 + VNI S++ +EGDV+ +++KSK+ V A QL A+R E+++V+ M TF R P Sbjct: 128 QKVNIPSFKVQEGDVVGLREKSKKQLRVQTALQLAAQRGEVEWMNVDSSKMEGTFTRNPD 187 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 D+P + NL+VE YS+ Sbjct: 188 R-SDLPAEI--NENLIVELYSK 206 >gi|262383848|ref|ZP_06076984.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_33B] gi|301312006|ref|ZP_07217928.1| ribosomal protein S4 [Bacteroides sp. 20_3] gi|262294746|gb|EEY82678.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_33B] gi|300830108|gb|EFK60756.1| ribosomal protein S4 [Bacteroides sp. 20_3] Length = 201 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNMVYRLGMAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V++KSK + + +A +I + +M + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSKYPWIEWDQSSMSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P + Q L+VE YS+ Sbjct: 179 HLPER-TDIPENIKEQ--LIVELYSK 201 >gi|56477618|ref|YP_159207.1| 30S ribosomal protein S4 [Aromatoleum aromaticum EbN1] gi|81357334|sp|Q5P308|RS4_AZOSE RecName: Full=30S ribosomal protein S4 gi|56313661|emb|CAI08306.1| 30S Ribosomal protein S4 [Aromatoleum aromaticum EbN1] Length = 209 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 122/215 (56%), Gaps = 15/215 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKAEKCFTDKCAIERRAYAPGQHGQRSGQRMSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR ++ EA+R RG T NL+ LE RLD++VYR F + +RQ Sbjct: 61 KQKIRRLYG-VLEAQFRKVYAEAERRRGQTGENLLQLLEGRLDSVVYRMGFGGSRAESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H +LVNG+ VNI SY + GDV+E+ + S+ ++ + LEA+ A R PE++ V+ Sbjct: 120 LVRHNGILVNGKRVNIPSYVVRPGDVVELTEGSRGQLRVKAALEAA--ASRGFPEWLDVD 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + P + LVVE YSR Sbjct: 178 AKAGKGTFKAYP---QRAELPPTINEGLVVELYSR 209 >gi|30264729|ref|NP_847106.1| 30S ribosomal protein S4 [Bacillus anthracis str. Ames] gi|42783839|ref|NP_981086.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 10987] gi|47530203|ref|YP_021552.1| 30S ribosomal protein S4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187548|ref|YP_030801.1| 30S ribosomal protein S4 [Bacillus anthracis str. Sterne] gi|49481409|ref|YP_038704.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140852|ref|YP_085977.1| 30S ribosomal protein S4 [Bacillus cereus E33L] gi|65322027|ref|ZP_00394986.1| COG0522: Ribosomal protein S4 and related proteins [Bacillus anthracis str. A2012] gi|118479796|ref|YP_896947.1| 30S ribosomal protein S4 [Bacillus thuringiensis str. Al Hakam] gi|165869836|ref|ZP_02214494.1| ribosomal protein S4 [Bacillus anthracis str. A0488] gi|167633851|ref|ZP_02392174.1| ribosomal protein S4 [Bacillus anthracis str. A0442] gi|167638038|ref|ZP_02396316.1| ribosomal protein S4 [Bacillus anthracis str. A0193] gi|170685670|ref|ZP_02876893.1| ribosomal protein S4 [Bacillus anthracis str. A0465] gi|170705531|ref|ZP_02895995.1| ribosomal protein S4 [Bacillus anthracis str. A0389] gi|177651189|ref|ZP_02934020.1| ribosomal protein S4 [Bacillus anthracis str. A0174] gi|190568368|ref|ZP_03021276.1| ribosomal protein S4 [Bacillus anthracis Tsiankovskii-I] gi|196032907|ref|ZP_03100320.1| ribosomal protein S4 [Bacillus cereus W] gi|196040797|ref|ZP_03108095.1| ribosomal protein S4 [Bacillus cereus NVH0597-99] gi|218905885|ref|YP_002453719.1| ribosomal protein S4 [Bacillus cereus AH820] gi|225866636|ref|YP_002752014.1| 30S ribosomal protein S4 [Bacillus cereus 03BB102] gi|227817448|ref|YP_002817457.1| 30S ribosomal protein S4 [Bacillus anthracis str. CDC 684] gi|228917301|ref|ZP_04080856.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929709|ref|ZP_04092726.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935965|ref|ZP_04098775.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948386|ref|ZP_04110669.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987906|ref|ZP_04148014.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093753|ref|ZP_04224852.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-42] gi|229124225|ref|ZP_04253417.1| 30S ribosomal protein S4 [Bacillus cereus 95/8201] gi|229158263|ref|ZP_04286330.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 4342] gi|229186914|ref|ZP_04314069.1| 30S ribosomal protein S4 [Bacillus cereus BGSC 6E1] gi|229602554|ref|YP_002868937.1| 30S ribosomal protein S4 [Bacillus anthracis str. A0248] gi|254687468|ref|ZP_05151324.1| 30S ribosomal protein S4 [Bacillus anthracis str. CNEVA-9066] gi|254725030|ref|ZP_05186813.1| 30S ribosomal protein S4 [Bacillus anthracis str. A1055] gi|254736768|ref|ZP_05194474.1| 30S ribosomal protein S4 [Bacillus anthracis str. Western North America USA6153] gi|254741805|ref|ZP_05199492.1| 30S ribosomal protein S4 [Bacillus anthracis str. Kruger B] gi|254754597|ref|ZP_05206632.1| 30S ribosomal protein S4 [Bacillus anthracis str. Vollum] gi|254757429|ref|ZP_05209456.1| 30S ribosomal protein S4 [Bacillus anthracis str. Australia 94] gi|300118469|ref|ZP_07056212.1| 30S ribosomal protein S4 [Bacillus cereus SJ1] gi|301056163|ref|YP_003794374.1| 30S ribosomal protein S4 [Bacillus anthracis CI] gi|38372415|sp|Q81KT2|RS4_BACAN RecName: Full=30S ribosomal protein S4 gi|61215457|sp|Q633E0|RS4_BACCZ RecName: Full=30S ribosomal protein S4 gi|61215551|sp|Q6HCM2|RS4_BACHK RecName: Full=30S ribosomal protein S4 gi|61215626|sp|Q72Z76|RS4_BACC1 RecName: Full=30S ribosomal protein S4 gi|152060934|sp|A0RJP7|RS4_BACAH RecName: Full=30S ribosomal protein S4 gi|226697800|sp|B7JS31|RS4_BACC0 RecName: Full=30S ribosomal protein S4 gi|254764566|sp|C3PBC1|RS4_BACAA RecName: Full=30S ribosomal protein S4 gi|254764567|sp|C3L9W4|RS4_BACAC RecName: Full=30S ribosomal protein S4 gi|254764568|sp|C1EV03|RS4_BACC3 RecName: Full=30S ribosomal protein S4 gi|30259404|gb|AAP28592.1| 30S ribosomal protein S4 [Bacillus anthracis str. Ames] gi|42739769|gb|AAS43694.1| ribosomal protein S4 [Bacillus cereus ATCC 10987] gi|47505351|gb|AAT34027.1| ribosomal protein S4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181475|gb|AAT56851.1| ribosomal protein S4 [Bacillus anthracis str. Sterne] gi|49332965|gb|AAT63611.1| ribosomal protein S4 (30S ribosomal protein S4) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974321|gb|AAU15871.1| ribosomal protein S4 (30S ribosomal protein S4) [Bacillus cereus E33L] gi|118419021|gb|ABK87440.1| SSU ribosomal protein S4P [Bacillus thuringiensis str. Al Hakam] gi|164714665|gb|EDR20184.1| ribosomal protein S4 [Bacillus anthracis str. A0488] gi|167513855|gb|EDR89223.1| ribosomal protein S4 [Bacillus anthracis str. A0193] gi|167530652|gb|EDR93354.1| ribosomal protein S4 [Bacillus anthracis str. A0442] gi|170129656|gb|EDS98519.1| ribosomal protein S4 [Bacillus anthracis str. A0389] gi|170670134|gb|EDT20874.1| ribosomal protein S4 [Bacillus anthracis str. A0465] gi|172083015|gb|EDT68077.1| ribosomal protein S4 [Bacillus anthracis str. A0174] gi|190560624|gb|EDV14601.1| ribosomal protein S4 [Bacillus anthracis Tsiankovskii-I] gi|195994336|gb|EDX58291.1| ribosomal protein S4 [Bacillus cereus W] gi|196028251|gb|EDX66860.1| ribosomal protein S4 [Bacillus cereus NVH0597-99] gi|218535551|gb|ACK87949.1| ribosomal protein S4 [Bacillus cereus AH820] gi|225790794|gb|ACO31011.1| 30S ribosomal protein S4 [Bacillus cereus 03BB102] gi|227006605|gb|ACP16348.1| 30S ribosomal protein S4 [Bacillus anthracis str. CDC 684] gi|228596651|gb|EEK54316.1| 30S ribosomal protein S4 [Bacillus cereus BGSC 6E1] gi|228625221|gb|EEK81981.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 4342] gi|228659527|gb|EEL15175.1| 30S ribosomal protein S4 [Bacillus cereus 95/8201] gi|228689638|gb|EEL43446.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-42] gi|228771829|gb|EEM20287.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811373|gb|EEM57711.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823733|gb|EEM69555.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829888|gb|EEM75508.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842342|gb|EEM87435.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266962|gb|ACQ48599.1| 30S ribosomal protein S4 [Bacillus anthracis str. A0248] gi|298724141|gb|EFI64840.1| 30S ribosomal protein S4 [Bacillus cereus SJ1] gi|300378332|gb|ADK07236.1| 30S ribosomal protein S4 [Bacillus cereus biovar anthracis str. CI] Length = 200 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERAELPAEINEALIVEFYSR 200 >gi|302877826|ref|YP_003846390.1| 30S ribosomal protein S4 [Gallionella capsiferriformans ES-2] gi|302580615|gb|ADL54626.1| ribosomal protein S4 [Gallionella capsiferriformans ES-2] Length = 209 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K + RR GE L+ + K V R+Y PG HGQRR ++ S +G QLR Sbjct: 1 MARNLDAKCRKCRREGEKLFLKGEKCFTDKCAVERRAYPPGQHGQRRNTRLSEYGGQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR +K+A+ SRG T +L+ LESRLD + YR F + ARQ Sbjct: 61 KQKVRRIYG-VLERQFRLTYKKAEASRGITGESLLQLLESRLDNVSYRMGFGASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H +LVNG+ VNI SY+ + GDV+EV +KSK + A AE R PE+I ++ Sbjct: 120 VVRHNALLVNGKRVNIPSYQVRPGDVVEVAEKSKAQLRIKAAIAAAETRGFPEWIEMDTK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + P + +LVVE YS+ Sbjct: 180 AFKGTFKANP---QRAELPATINEHLVVELYSK 209 >gi|298207752|ref|YP_003715931.1| 30S ribosomal protein S4 [Croceibacter atlanticus HTCC2559] gi|83850390|gb|EAP88258.1| 30S ribosomal protein S4 [Croceibacter atlanticus HTCC2559] Length = 201 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR +FK+A + G T L+ ESRLD +VYR P+ ARQ V+HR Sbjct: 60 YTYG-ILERQFRGLFKKATAATGITGEVLLQLCESRLDNVVYRMGISPSRPGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L ++ ++S V E+I+ N++ T+ Sbjct: 119 HITVNGELVNIPSYQLKAGDVVGVREKSKSLDAI-QSSLSNNSTVYEWITWNNEKKEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P V P + +VE YS+ Sbjct: 178 VSVPGR---VQIPENINEQFIVELYSK 201 >gi|262373497|ref|ZP_06066775.1| ribosomal protein S4 [Acinetobacter junii SH205] gi|262311250|gb|EEY92336.1| ribosomal protein S4 [Acinetobacter junii SH205] Length = 208 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|154249790|ref|YP_001410615.1| 30S ribosomal protein S4 [Fervidobacterium nodosum Rt17-B1] gi|171769361|sp|A7HM25|RS4_FERNB RecName: Full=30S ribosomal protein S4 gi|154153726|gb|ABS60958.1| RNA-binding S4 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 209 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K P + R + PG HG R K K + + LQLRA Sbjct: 1 MARNTGPLCKLCRREGMKLYLKGERCFSEKCPFDKRPFAPGQHG-REKKKLTQYALQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ MK+ YG + EK+FR ++ A + GDT NL++ +E RLD +VYR F AARQ Sbjct: 60 KQTMKRIYG-VLEKQFRIYYERAVKQSGDTRENLVAQVERRLDNVVYRLGFAINRRAARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V+H HVLVNG+ V+I SY+ + GDVI +K+ S+ + + +A +L + R + ++ V++D Sbjct: 119 LVSHGHVLVNGKKVDIPSYQVRPGDVISIKEGSRTIEPIKQAIELNKGRAISNWLEVDYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR P + + PV +Q +VEFYSR Sbjct: 179 QFKGVYVRNPKLEEIIDLPVNVQA--IVEFYSR 209 >gi|23099660|ref|NP_693126.1| 30S ribosomal protein S4 [Oceanobacillus iheyensis HTE831] gi|26399359|sp|P59130|RS4_OCEIH RecName: Full=30S ribosomal protein S4 gi|22777890|dbj|BAC14161.1| 30S ribosomal protein S4 [Oceanobacillus iheyensis HTE831] Length = 200 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K ++ R Y PG HG ++ K S +GLQ++ KQK++ Sbjct: 1 MARYTGSVWKKSRRLGISLTGTGKE-LDKRPYAPGQHGPNQRRKLSEYGLQMQEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-LNERQFRTLFDKAGKMKGIHGENFMILLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G V+I SY K G VI +++KSK L V EA + A VPEY S + D M ++ Sbjct: 119 VTVDGGRVDIPSYAIKPGQVIGLREKSKNLDVVKEALE-ANSFVPEYTSFDADKMEGSYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VEFYSR Sbjct: 178 RFPERSE---LPAEINEQLIVEFYSR 200 >gi|206977164|ref|ZP_03238063.1| 30S ribosomal protein S4 [Bacillus cereus H3081.97] gi|217962143|ref|YP_002340713.1| 30S ribosomal protein S4 [Bacillus cereus AH187] gi|229141392|ref|ZP_04269930.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST26] gi|229198816|ref|ZP_04325510.1| 30S ribosomal protein S4 [Bacillus cereus m1293] gi|226697803|sp|B7HSJ2|RS4_BACC7 RecName: Full=30S ribosomal protein S4 gi|206744649|gb|EDZ56057.1| 30S ribosomal protein S4 [Bacillus cereus H3081.97] gi|217062938|gb|ACJ77188.1| ribosomal protein S4 [Bacillus cereus AH187] gi|228584652|gb|EEK42776.1| 30S ribosomal protein S4 [Bacillus cereus m1293] gi|228642173|gb|EEK98466.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST26] Length = 200 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSSNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERAELPAEINEALIVEFYSR 200 >gi|319651867|ref|ZP_08005992.1| 30S ribosomal protein S4 [Bacillus sp. 2_A_57_CT2] gi|317396519|gb|EFV77232.1| 30S ribosomal protein S4 [Bacillus sp. 2_A_57_CT2] Length = 200 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRNLFDKAGKMPGKHGENFMILLESRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR G I +++KS+ L V EA ++ VP+++S + D + TF Sbjct: 119 IMVDGSRVDIPSYRVAPGQTITLREKSRSLDIVKEAIEV-NNFVPDFVSFDADKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + +L+VEFYSR Sbjct: 178 RMPERSE---LPAEINESLIVEFYSR 200 >gi|228941836|ref|ZP_04104383.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960923|ref|ZP_04122556.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974761|ref|ZP_04135327.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981356|ref|ZP_04141656.1| 30S ribosomal protein S4 [Bacillus thuringiensis Bt407] gi|229048362|ref|ZP_04193930.1| 30S ribosomal protein S4 [Bacillus cereus AH676] gi|229087217|ref|ZP_04219364.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-44] gi|229112121|ref|ZP_04241664.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-15] gi|229147216|ref|ZP_04275574.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST24] gi|228636326|gb|EEK92798.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST24] gi|228671444|gb|EEL26745.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-15] gi|228696098|gb|EEL48936.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-44] gi|228723087|gb|EEL74464.1| 30S ribosomal protein S4 [Bacillus cereus AH676] gi|228778556|gb|EEM26823.1| 30S ribosomal protein S4 [Bacillus thuringiensis Bt407] gi|228785164|gb|EEM33177.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798819|gb|EEM45799.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818048|gb|EEM64126.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942441|gb|AEA18337.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar chinensis CT-43] Length = 200 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERAELPAEINEALIVEFYSR 200 >gi|28897055|ref|NP_796660.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus RIMD 2210633] gi|153840228|ref|ZP_01992895.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ3810] gi|156973074|ref|YP_001443981.1| 30S ribosomal protein S4 [Vibrio harveyi ATCC BAA-1116] gi|260877973|ref|ZP_05890328.1| ribosomal protein S4 [Vibrio parahaemolyticus AN-5034] gi|260895673|ref|ZP_05904169.1| ribosomal protein S4 [Vibrio parahaemolyticus Peru-466] gi|260903551|ref|ZP_05911946.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ4037] gi|262392492|ref|YP_003284346.1| 30S ribosomal protein S4p [Vibrio sp. Ex25] gi|269964713|ref|ZP_06178951.1| 30S ribosomal protein S4 [Vibrio alginolyticus 40B] gi|31340377|sp|Q87SZ1|RS4_VIBPA RecName: Full=30S ribosomal protein S4 gi|171769916|sp|A7N0H7|RS4_VIBHB RecName: Full=30S ribosomal protein S4 gi|28805263|dbj|BAC58544.1| ribosomal protein S4 [Vibrio parahaemolyticus RIMD 2210633] gi|149746105|gb|EDM57235.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ3810] gi|156524668|gb|ABU69754.1| hypothetical protein VIBHAR_00753 [Vibrio harveyi ATCC BAA-1116] gi|262336086|gb|ACY49881.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. Ex25] gi|269830612|gb|EEZ84833.1| 30S ribosomal protein S4 [Vibrio alginolyticus 40B] gi|308089501|gb|EFO39196.1| ribosomal protein S4 [Vibrio parahaemolyticus Peru-466] gi|308090096|gb|EFO39791.1| ribosomal protein S4 [Vibrio parahaemolyticus AN-5034] gi|308109051|gb|EFO46591.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ4037] gi|328471858|gb|EGF42735.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus 10329] Length = 206 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ A + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADINEQ--LIVELYSK 206 >gi|258406160|ref|YP_003198902.1| 30S ribosomal protein S4 [Desulfohalobium retbaense DSM 5692] gi|257798387|gb|ACV69324.1| ribosomal protein S4 [Desulfohalobium retbaense DSM 5692] Length = 208 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK ++ RR GE L+ + K R+Y PG HG+ RK KPS + +QLR Sbjct: 1 MARYTESKCRLCRREGEKLFLKGDRCYTDKCAFERRAYPPGQHGRMRK-KPSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR+ FK+A+ +G T NL+ LE+RLD +VYR F + ARQ Sbjct: 60 KQKVRRLYG-ILENQFRNYFKKAEAQKGVTGTNLLRLLETRLDNVVYRLGFANSREQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR VNI S + +EGD IEV+++S+++ + EA + +A R PE++ V+ Sbjct: 119 LVRHGHFELNGRRVNIPSLQVREGDAIEVRERSRKVPAFQEAQEVIARRGCPEWLEVDSA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +DV +P+ Q L+VE YS+ Sbjct: 179 AFKGAIKAQPQR-EDVTFPINEQ--LIVELYSK 208 >gi|223936404|ref|ZP_03628316.1| ribosomal protein S4 [bacterium Ellin514] gi|223894922|gb|EEF61371.1| ribosomal protein S4 [bacterium Ellin514] Length = 202 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 125/209 (59%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR G ++G P + R+YGPG+HG + + K + +GL L KQK++ Sbjct: 1 MARYTGPRVRISRRFGIPIFG-PTKYLERRNYGPGVHGPKSRRKHTDYGLGLIEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + E++FR +++ A + RG T ++ LE+RLD +V+ F T AARQ V+H H Sbjct: 60 YYG-LMERQFRGVYERALKRRGVTGEQMLQILETRLDNVVFHLGFANTRAAARQLVSHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR VNI S+ K DVIE K S+QLA+ LE S R VP+++S+N + + Sbjct: 119 VRVNGRKVNIPSFALKVNDVIEAKDSNVSRQLATKNLETS--TNRSVPDWLSLNKEALKG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +RIPS + P I VVEFYSR Sbjct: 177 VVMRIPSRDEIQP---IANEQAVVEFYSR 202 >gi|297569396|ref|YP_003690740.1| ribosomal protein S4 [Desulfurivibrio alkaliphilus AHT2] gi|296925311|gb|ADH86121.1| ribosomal protein S4 [Desulfurivibrio alkaliphilus AHT2] Length = 209 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/184 (42%), Positives = 110/184 (59%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RSY PG HGQ R K S + LQLR KQK+K+ YG + E +FR F EA+R RG Sbjct: 30 KCSFERRSYAPGQHGQARLRKVSDYALQLREKQKVKRIYG-MLEDQFRRYFDEAERRRGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LESRLD +VYR F + AR V H H L+NGR VNI S + K GDVI + Sbjct: 89 TGEILLQMLESRLDNVVYRLGFAASRNQARHLVRHNHFLLNGRKVNIPSLQVKVGDVITL 148 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+++ ++ E+ + +A R VP ++ +N D T P +++ P+ Q L+VE Sbjct: 149 REKSREVEAIKESLAAVARRGVPTWLELNQDAFSGTVKSAPDR-QELTMPI--QEQLIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|262280201|ref|ZP_06057985.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus RUH2202] gi|262257979|gb|EEY76713.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus RUH2202] Length = 208 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 121/212 (57%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMDVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---ADLPAEINESLIVELYSK 208 >gi|297618356|ref|YP_003703515.1| ribosomal protein S4 [Syntrophothermus lipocalidus DSM 12680] gi|297146193|gb|ADI02950.1| ribosomal protein S4 [Syntrophothermus lipocalidus DSM 12680] Length = 209 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 7/185 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + + Y PG HG+ R+ KPS +G QLR KQK K+ YG I E++FR+ F++A+R G Sbjct: 30 KCALERKPYIPGQHGRGRRGKPSEYGSQLREKQKAKRIYG-ILERQFRNYFEKAERQPGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL++ LE RLD +VYR F + ARQ + H H L+NGR VNI S K GDVI+V Sbjct: 89 TGENLLALLERRLDNVVYRLGFAGSRPEARQLITHGHFLLNGRKVNIPSILVKVGDVIQV 148 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 K+KS + A E +Q A + PE++ VN DN+ + +P + D P + +L+V Sbjct: 149 KEKSMESAKFKELQAQAAYKTPPEWLEVNADNLSGRVLALPRRDQIDAP----IDEHLIV 204 Query: 202 EFYSR 206 E YSR Sbjct: 205 ELYSR 209 >gi|332170584|gb|AEE19839.1| ribosomal protein S4 [Krokinobacter diaphorus 4H-3-7-5] Length = 201 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAVQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR+++ A+R+ G T L+ E RLD +V+R P+ ARQ V HR Sbjct: 60 YTYG-ILERQFRNMYDRANRAPGITGEVLLQLCECRLDNVVHRMGMSPSRSGARQLVGHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI S++ K GDV+ V++KSK L V+ S +V E+IS N+D TF Sbjct: 119 HITVNGSIVNIPSFQVKPGDVVAVREKSKSL-EVISNSLQNSSNVYEWISWNNDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P + +VE YS+ Sbjct: 178 VAIPQRLQ---IPENINTQFIVELYSK 201 >gi|289579115|ref|YP_003477742.1| ribosomal protein S4 [Thermoanaerobacter italicus Ab9] gi|297545302|ref|YP_003677604.1| ribosomal protein S4 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528828|gb|ADD03180.1| ribosomal protein S4 [Thermoanaerobacter italicus Ab9] gi|296843077|gb|ADH61593.1| ribosomal protein S4 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 206 Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 116/183 (63%), Gaps = 6/183 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV R Y PG HGQ RK SY G+QLR KQK+K+YYG + E++F +++A+R +G Sbjct: 30 KCPVVRRGYAPGQHGQERKKLTSY-GIQLREKQKLKRYYG-LLERQFERFYEKAERMKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR F + ARQ V+H H+ VNG+ V+I S+ K GDVI V Sbjct: 88 TGENLLQLLERRLDNVVYRLGFAVSRRQARQLVSHGHIEVNGKKVDIPSFLVKPGDVISV 147 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 ++KS+ + +++ + A R+VP+++ +N D V +P + + P+ Q +L+VE Sbjct: 148 REKSRSM-ELIKNNLEAARNVPDWLELNKDAFEGRVVSLPRR-EHIDLPI--QEHLIVEL 203 Query: 204 YSR 206 YS+ Sbjct: 204 YSK 206 >gi|154148523|ref|YP_001405813.1| 30S ribosomal protein S4 [Campylobacter hominis ATCC BAA-381] gi|171769700|sp|A7HZX2|RS4_CAMHC RecName: Full=30S ribosomal protein S4 gi|153804532|gb|ABS51539.1| ribosomal protein S4 [Campylobacter hominis ATCC BAA-381] Length = 208 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ K++RR+G +L+ + KS + R Y PG HGQRR +K S +G QLR Sbjct: 1 MSRYTGPVEKLERRLGVDLFMKGERRLAGKSALLKRPYAPGQHGQRR-AKVSEYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +FKEA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-LSEKQFRRLFKEAARREGNTGEILVQLLEQRLDNLVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LV+G+ V+I SY K G IE+ +KSK +L A +L A+ + ++ V D Sbjct: 119 LVTHGHILVDGKRVDIPSYSVKVGQKIEIAEKSKNNPQILRAVELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++ P+ + +VE YS+ Sbjct: 179 KKFGIFTRKPER-DEIVIPI--EERFIVELYSK 208 >gi|119899681|ref|YP_934894.1| 30S ribosomal protein S4 [Azoarcus sp. BH72] gi|152060933|sp|A1KB02|RS4_AZOSB RecName: Full=30S ribosomal protein S4 gi|119672094|emb|CAL96008.1| 30S ribosomal protein S4 [Azoarcus sp. BH72] Length = 209 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRAYAPGQHGQRSGQRLSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR ++ EADR RG T NL+ LE RLD++ YR F + ARQ Sbjct: 61 KQKIRRLYG-VLERQFRKVYAEADRRRGQTGENLLQLLEGRLDSVAYRMGFGASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H VLVNG+ VNI SY + GDVIE+ + +K V A + AE R PE+I V+ Sbjct: 120 VVRHNGVLVNGKRVNIPSYTVRPGDVIELAEGTKGHLRVKAALEAAESRGFPEWIEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P + + LVVE YSR Sbjct: 180 AGKGVFKAYP---QRSELSATINEGLVVELYSR 209 >gi|293400755|ref|ZP_06644900.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305781|gb|EFE47025.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 200 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 125/208 (60%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G ++ + R+Y PG HG ++ K + +GLQLR KQK++ Sbjct: 1 MSRVKGPVWKTSRRLGFSIL-ETGEELQKRAYAPGQHGPTKRVKLTNYGLQLREKQKIRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F +A + +G T N ++ LESRLD +VYR F T AARQ VNH H Sbjct: 60 MYG-LNERQFHNLFVKASKMKGVTGENFLNLLESRLDNLVYRLGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G IEVK+KSK LA++ EA + V ++ V+ D T++ Sbjct: 119 ILVNGKKVDIPSFIVKPGTTIEVKEKSKNLAAINEALEACLNTVA-FVDVDKDAKKGTYL 177 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L + LVVEFY+R Sbjct: 178 RLPERSELNQEVNEL-----LVVEFYNR 200 >gi|242309344|ref|ZP_04808499.1| 30S ribosomal protein S4 [Helicobacter pullorum MIT 98-5489] gi|239523915|gb|EEQ63781.1| 30S ribosomal protein S4 [Helicobacter pullorum MIT 98-5489] Length = 208 Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS ++ R YGPG HGQRR K S +G+QLR Sbjct: 1 MARYRGPVEKIERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQRR-GKISEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG +SEK+FRSIF EA+R G+T NLI +E RLD +VYR F T ARQ Sbjct: 60 KQKARMMYG-VSEKQFRSIFVEANRLEGNTGENLIKLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNH 172 V H H+LV+G+ +NI S G IE+ +K+K+ + A +L ++ VP ++ V+ Sbjct: 119 LVVHGHILVDGKRLNIPSAFVNAGQKIEICEKTKKNPQIQRAIELTKQTGIVP-WVDVDQ 177 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F R+P ++V P+ + L+VE YS+ Sbjct: 178 EKVFGIFTRLPER-EEVVIPI--EERLIVELYSK 208 >gi|332040528|gb|EGI76904.1| 30S ribosomal protein S4 [Hylemonella gracilis ATCC 19624] Length = 207 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 131/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSK---PGQHGRISGARTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F++A + +G++ NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYFEQASQRKGNSGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG++VNI SY + GDVI V++KSK+ V+EA QLA++ P ++ VN Sbjct: 117 QLVSHKAITVNGQAVNIPSYMVQAGDVIAVREKSKKQNRVVEALQLAQQVGFPAWVEVNV 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F + P +D + + +L+VE YSR Sbjct: 177 DKAEGAFKKAPD--RD-EFGSDINESLIVELYSR 207 >gi|237653971|ref|YP_002890285.1| 30S ribosomal protein S4 [Thauera sp. MZ1T] gi|237625218|gb|ACR01908.1| ribosomal protein S4 [Thauera sp. MZ1T] Length = 209 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCSIERRAYAPGQHGQRSGQRLSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR ++ EADR RG T NL+ LE RLD + YR F + ARQ Sbjct: 61 KQKIRRIYG-VLERQFRKVYAEADRRRGQTGENLLQLLEGRLDAVAYRMGFGASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H VLVNG+ VNI SY + GDV+E+ ++++ V A + AE R PE++ V+ Sbjct: 120 VVRHNGVLVNGKRVNIPSYVVRPGDVVELTERARGHLRVKAALEAAESRGFPEWLEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + P + LVVE YSR Sbjct: 180 AGKGTFKAYPVRSE---LPPTINEGLVVELYSR 209 >gi|269959712|ref|ZP_06174092.1| 30S ribosomal protein S4 [Vibrio harveyi 1DA3] gi|269835635|gb|EEZ89714.1| 30S ribosomal protein S4 [Vibrio harveyi 1DA3] Length = 202 Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 127/204 (62%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQKVRRMYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V+H+ +LV Sbjct: 63 -VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAILV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NG+ VN+ S++ DV+ +++K+KQ A + A ++AE R+ P +I V+ M TF R+ Sbjct: 122 NGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKMEGTFKRM 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + Q L+VE YS+ Sbjct: 182 PER-SDLSADINEQ--LIVELYSK 202 >gi|309782859|ref|ZP_07677579.1| ribosomal protein S4 [Ralstonia sp. 5_7_47FAA] gi|308918283|gb|EFP63960.1| ribosomal protein S4 [Ralstonia sp. 5_7_47FAA] Length = 207 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKTGDVIAIREKSKKQVRIAESLTLAEQTGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +IP D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQIPDR-ADIAGDI--NESLIVELYSR 207 >gi|323492143|ref|ZP_08097305.1| 30S ribosomal protein S4 [Vibrio brasiliensis LMG 20546] gi|323313704|gb|EGA66806.1| 30S ribosomal protein S4 [Vibrio brasiliensis LMG 20546] Length = 206 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VNI S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|29653614|ref|NP_819306.1| 30S ribosomal protein S4 [Coxiella burnetii RSA 493] gi|154706831|ref|YP_001425158.1| 30S ribosomal protein S4 [Coxiella burnetii Dugway 5J108-111] gi|161831288|ref|YP_001596209.1| 30S ribosomal protein S4 [Coxiella burnetii RSA 331] gi|212213226|ref|YP_002304162.1| 30S ribosomal protein S4 [Coxiella burnetii CbuG_Q212] gi|41017834|sp|Q83EQ3|RS4_COXBU RecName: Full=30S ribosomal protein S4 gi|189045376|sp|A9KD07|RS4_COXBN RecName: Full=30S ribosomal protein S4 gi|189045377|sp|A9NAZ4|RS4_COXBR RecName: Full=30S ribosomal protein S4 gi|226697830|sp|B6J239|RS4_COXB2 RecName: Full=30S ribosomal protein S4 gi|29540876|gb|AAO89820.1| SSU ribosomal protein S4P [Coxiella burnetii RSA 493] gi|154356117|gb|ABS77579.1| SSU ribosomal protein S4P [Coxiella burnetii Dugway 5J108-111] gi|161763155|gb|ABX78797.1| ribosomal protein S4 [Coxiella burnetii RSA 331] gi|212011636|gb|ACJ19017.1| SSU ribosomal protein S4P [Coxiella burnetii CbuG_Q212] Length = 206 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+H QRR + + +G+QLR KQ +K+YY D+ EK+F + +K+ADR +G T NL+ LE Sbjct: 38 PGMHWQRR-GRTTDYGVQLRMKQMIKRYY-DVLEKQFANYYKQADRLKGSTGDNLLKLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T ARQ ++H+ +LVNG VNI SY+ K GD+IEV+ ++K + Sbjct: 96 SRLDNVVYRMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLRI 155 Query: 154 LEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +LA++ P +I V+ M TF P P + NLVVE YS+ Sbjct: 156 KGALELAQQRAPISWIEVDTKKMTGTFKEQPDV---AELPAEFKVNLVVELYSK 206 >gi|288553742|ref|YP_003425677.1| 30S ribosomal protein S4 [Bacillus pseudofirmus OF4] gi|288544902|gb|ADC48785.1| 30S ribosomal protein S4 [Bacillus pseudofirmus OF4] Length = 200 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LAKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++E++FR IF +A + G N + LESRLD +VYR T AARQ VNH H Sbjct: 60 MFG-VNERQFRRIFDDAGKMPGIHGENFMILLESRLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I +++KS+ L+ V EA + A P Y++ + + + TF Sbjct: 119 IMVDGGRVDIPSYRVKPGQTIALREKSRDLSVVKEALE-ANDFTPAYVTFDAEKLEGTFS 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEITEALIVEFYSR 200 >gi|224417910|ref|ZP_03655916.1| 30S ribosomal protein S4 [Helicobacter canadensis MIT 98-5491] gi|253827249|ref|ZP_04870134.1| 30S ribosomal protein S4 [Helicobacter canadensis MIT 98-5491] gi|313141451|ref|ZP_07803644.1| 30S ribosomal protein S4 [Helicobacter canadensis MIT 98-5491] gi|253510655|gb|EES89314.1| 30S ribosomal protein S4 [Helicobacter canadensis MIT 98-5491] gi|313130482|gb|EFR48099.1| 30S ribosomal protein S4 [Helicobacter canadensis MIT 98-5491] Length = 208 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS ++ R YGPG HGQRR K S +G+QLR Sbjct: 1 MARYRGPVEKIERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQRR-GKISEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG +SEK+FRSIF EA+R G+T NLI +E RLD +VYR F T ARQ Sbjct: 60 KQKARLMYG-VSEKQFRSIFVEANRLEGNTGENLIKLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNH 172 V H H+LV+G+ +NI S G IE+ +K+K+ + A +L ++ VP ++ V+ Sbjct: 119 LVVHGHILVDGKRLNIPSAFVSAGQKIEICEKTKKNPQIQRAIELTKQTGIVP-WVDVDQ 177 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F R+P ++V P+ + L+VE YS+ Sbjct: 178 EKVFGIFTRLPER-EEVVIPI--EERLIVELYSK 208 >gi|162448043|ref|YP_001621175.1| 30S ribosomal protein S4 [Acholeplasma laidlawii PG-8A] gi|189045362|sp|A9NHG9|RS4_ACHLI RecName: Full=30S ribosomal protein S4 gi|161986150|gb|ABX81799.1| small subunit ribosomal protein S4 [Acholeplasma laidlawii PG-8A] Length = 198 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 125/208 (60%), Gaps = 12/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+G ++ K + R Y PG HGQRR SK S +G+QL+ KQK++ Sbjct: 1 MSRFTGSTWKVSRRLGYSISETGKE-LKKRPYAPGQHGQRR-SKLSNYGIQLQEKQKVRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+F+ F E+ + +G N + LESRLD +VYR F T ARQ VNH H Sbjct: 59 VYG-VSEKQFKKTFLESAKMQGKQGENFLKLLESRLDNVVYRLGFTKTRAQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYISVNHDNMVAT 178 +LV+G+ V+I SYR G +++K+KSK L V EA +Q A D Y++++ N V T Sbjct: 118 ILVDGKKVDIPSYRLAPGQTVQLKEKSKNLTIVKEALEAQFAHVD---YVALD-ANGVGT 173 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + + + L+VEFY+R Sbjct: 174 FSRLPERNE---FLFDINEQLIVEFYNR 198 >gi|196044058|ref|ZP_03111295.1| ribosomal protein S4 [Bacillus cereus 03BB108] gi|196025394|gb|EDX64064.1| ribosomal protein S4 [Bacillus cereus 03BB108] gi|324328549|gb|ADY23809.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 200 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERSELPAEINEALIVEFYSR 200 >gi|163840724|ref|YP_001625129.1| 30S ribosomal protein S4 [Renibacterium salmoninarum ATCC 33209] gi|162954200|gb|ABY23715.1| SSU ribosomal protein S4P [Renibacterium salmoninarum ATCC 33209] Length = 223 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 116/201 (57%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I R +G L + + R YGPG HG+ RK + S + ++LR KQ+++ YG I E + Sbjct: 27 RISRALGIALTPKAAKYLERRPYGPGEHGRARKKQDSDYAVRLREKQRLRAQYG-IREAQ 85 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 +F+EA R++G T NL+ LE RLD +V RA F TI ARQ V HRH++V+G V+ Sbjct: 86 MTRVFEEARRTKGLTGENLVELLEMRLDALVLRAGFARTIAQARQLVVHRHIMVDGARVD 145 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S+R EG +I V +S+ +A + A+ A RD VP Y+ V + + A VR P Sbjct: 146 RPSFRVGEGQLIHVHPRSEVMAPLQVAAAGAHRDVLPAVPGYLDVKLEGLQARLVRRP-- 203 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K PV + LVVEFY+R Sbjct: 204 -KRTEVPVTCEEQLVVEFYAR 223 >gi|138896341|ref|YP_001126794.1| 30S ribosomal protein S4 [Geobacillus thermodenitrificans NG80-2] gi|196249964|ref|ZP_03148659.1| ribosomal protein S4 [Geobacillus sp. G11MC16] gi|172044188|sp|A4IRU5|RS4_GEOTN RecName: Full=30S ribosomal protein S4 gi|134267854|gb|ABO68049.1| Ribosomal protein S4 (BS4) [Geobacillus thermodenitrificans NG80-2] gi|196210478|gb|EDY05242.1| ribosomal protein S4 [Geobacillus sp. G11MC16] Length = 200 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFDEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA ++ VP+Y++ + + + T+ Sbjct: 119 ILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEAIEV-NNFVPDYLTFDPEKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|157164972|ref|YP_001467696.1| 30S ribosomal protein S4 [Campylobacter concisus 13826] gi|171855075|sp|A7ZFY8|RS4_CAMC1 RecName: Full=30S ribosomal protein S4 gi|112800789|gb|EAT98133.1| ribosomal protein S4 [Campylobacter concisus 13826] Length = 208 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS + R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYTGPVEKLERRLGVSLALKGERRLAGKSALEKRPYAPGQHGQRR-AKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F+EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G +EV +KSK ++ A L A+ + ++ V + Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEPGSKVEVAEKSKNNPQIVRAIDLTAQTGIVAWVDVEKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KKFGIFTRNPER-EEVIIPV--EERFIVELYSK 208 >gi|52081461|ref|YP_080252.1| 30S ribosomal protein S4 [Bacillus licheniformis ATCC 14580] gi|52786836|ref|YP_092665.1| 30S ribosomal protein S4 [Bacillus licheniformis ATCC 14580] gi|319647367|ref|ZP_08001589.1| 30S ribosomal protein S4 [Bacillus sp. BT1B_CT2] gi|81690928|sp|Q65G42|RS4_BACLD RecName: Full=30S ribosomal protein S4 gi|52004672|gb|AAU24614.1| ribosomal protein S4 [Bacillus licheniformis ATCC 14580] gi|52349338|gb|AAU41972.1| RpsD [Bacillus licheniformis ATCC 14580] gi|317390714|gb|EFV71519.1| 30S ribosomal protein S4 [Bacillus sp. BT1B_CT2] Length = 200 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LESRLD IVYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRNLFDKAAKMAGKHGENFMILLESRLDNIVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G V+I SY+ K G I +++KS+ L+ V EA ++ VPEY++ + + + + Sbjct: 119 VLVDGSRVDIPSYQVKPGQTISLREKSQNLSVVKEAVEV-NNFVPEYLTFDAEKLEGSLT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|30022730|ref|NP_834361.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 14579] gi|206969984|ref|ZP_03230938.1| 30S ribosomal protein S4 [Bacillus cereus AH1134] gi|218235372|ref|YP_002369450.1| 30S ribosomal protein S4 [Bacillus cereus B4264] gi|228923404|ref|ZP_04086692.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954925|ref|ZP_04116943.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072158|ref|ZP_04205367.1| 30S ribosomal protein S4 [Bacillus cereus F65185] gi|229081908|ref|ZP_04214400.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-2] gi|229129939|ref|ZP_04258905.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-Cer4] gi|229152850|ref|ZP_04281033.1| 30S ribosomal protein S4 [Bacillus cereus m1550] gi|229180974|ref|ZP_04308309.1| 30S ribosomal protein S4 [Bacillus cereus 172560W] gi|229192859|ref|ZP_04319817.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 10876] gi|296505124|ref|YP_003666824.1| 30S ribosomal protein S4 [Bacillus thuringiensis BMB171] gi|38372409|sp|Q817A4|RS4_BACCR RecName: Full=30S ribosomal protein S4 gi|226697802|sp|B7H711|RS4_BACC4 RecName: Full=30S ribosomal protein S4 gi|29898289|gb|AAP11562.1| SSU ribosomal protein S4P [Bacillus cereus ATCC 14579] gi|206735672|gb|EDZ52840.1| 30S ribosomal protein S4 [Bacillus cereus AH1134] gi|218163329|gb|ACK63321.1| ribosomal protein S4 [Bacillus cereus B4264] gi|228590698|gb|EEK48559.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 10876] gi|228602531|gb|EEK60017.1| 30S ribosomal protein S4 [Bacillus cereus 172560W] gi|228630670|gb|EEK87316.1| 30S ribosomal protein S4 [Bacillus cereus m1550] gi|228653630|gb|EEL09502.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-Cer4] gi|228701496|gb|EEL53990.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-2] gi|228711092|gb|EEL63058.1| 30S ribosomal protein S4 [Bacillus cereus F65185] gi|228804746|gb|EEM51347.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836358|gb|EEM81711.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326176|gb|ADH09104.1| 30S ribosomal protein S4 [Bacillus thuringiensis BMB171] Length = 200 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERSELPAEINEALIVEFYSR 200 >gi|161349358|ref|ZP_02096742.1| ribosomal protein S4 [Coxiella burnetii 'MSU Goat Q177'] gi|164601574|gb|EDQ95165.1| ribosomal protein S4 [Coxiella burnetii 'MSU Goat Q177'] Length = 206 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+H QRR + + +G+QLR KQ +K+YY D+ EK+F + +K+ADR +G T NL+ LE Sbjct: 38 PGMHWQRR-GRTTDYGVQLRMKQMIKRYY-DVLEKQFANYYKQADRLKGSTGDNLLKLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T ARQ ++H+ +LVNG VNI SY+ K GD+IEV+ ++K + Sbjct: 96 SRLDNVVYRMGFSATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLQI 155 Query: 154 LEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +LA++ P +I V+ M TF P P + NLVVE YS+ Sbjct: 156 KGALELAQQRAPISWIEVDTKKMTGTFKEQPDV---AELPAEFKVNLVVELYSK 206 >gi|308272954|emb|CBX29558.1| 30S ribosomal protein S4 [uncultured Desulfobacterium sp.] Length = 209 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + RSY PG HGQRR K S +G+QLR KQK K+ YG +SEK+FR F+ A+R + Sbjct: 30 KCAFDRRSYSPGQHGQRRGRKFSDYGVQLREKQKTKRLYG-LSEKQFRLFFERAERQKNI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR FV + R FV H H +NG+ +NI SY K GD++E+ Sbjct: 89 TGTNLLVMLERRLDNVVYRLGFVASRTQGRHFVRHNHFKINGKKINIPSYLIKVGDILEL 148 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + S+ + ++ ++ +A R VP+++ + DN P +D+ P+ Q L+VE Sbjct: 149 NETSRNIKAISDSLDAVARRGVPQWLELEKDNFKGRIKSFPVR-EDITMPI--QEQLIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|157693366|ref|YP_001487828.1| 30S ribosomal protein S4 [Bacillus pumilus SAFR-032] gi|172046056|sp|A8FGA1|RS4_BACP2 RecName: Full=30S ribosomal protein S4 gi|157682124|gb|ABV63268.1| ribosomal protein S4 [Bacillus pumilus SAFR-032] Length = 200 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAAKLPGKQGENFMILLETRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I S+ K G I +++KS+ LA V E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSFSVKPGQTIALREKSQNLAVVKESVEV-NSFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---ISEQLIVEFYSR 200 >gi|299535430|ref|ZP_07048752.1| 30S ribosomal protein S4 [Lysinibacillus fusiformis ZC1] gi|298729191|gb|EFI69744.1| 30S ribosomal protein S4 [Lysinibacillus fusiformis ZC1] Length = 200 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IEKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + +G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFRTLFNRAGKMKGVHGENFMILLETRLDNLVYRLGLARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I +++KS+ LA V+EA ++ VP+Y++ + D TF Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISLREKSQNLAVVVEAIEV-NNFVPDYLTFDADKKEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VE+YSR Sbjct: 178 RLPERSE---LSAEINEAFIVEYYSR 200 >gi|221142354|ref|ZP_03566847.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751546|gb|ADL65723.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 200 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHSH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|222098129|ref|YP_002532186.1| 30S ribosomal protein s4 [Bacillus cereus Q1] gi|254764569|sp|B9J159|RS4_BACCQ RecName: Full=30S ribosomal protein S4 gi|221242187|gb|ACM14897.1| ribosomal protein S4 (30S ribosomal protein S4) [Bacillus cereus Q1] Length = 200 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 ITVDGSRVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERAELPAEINEALIVEFYSR 200 >gi|229543523|ref|ZP_04432583.1| ribosomal protein S4 [Bacillus coagulans 36D1] gi|229327943|gb|EEN93618.1| ribosomal protein S4 [Bacillus coagulans 36D1] Length = 200 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + F +A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-LNERQFHNTFLKAGKMQGKHGENFMVLLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SYR + G I V++KS+ L + EA + VP+Y+S + D + T+ Sbjct: 119 ILVDGKRVDIPSYRVEPGQTIGVREKSRNLDVIKEAIETTT-FVPDYLSFDADKLEGTYS 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + +L+VEFYSR Sbjct: 178 RLPERSE---LPAEINESLIVEFYSR 200 >gi|228910481|ref|ZP_04074296.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 200] gi|228849247|gb|EEM94086.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 200] Length = 200 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVIVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERSELPAEINEALIVEFYSR 200 >gi|86132569|ref|ZP_01051162.1| 30S ribosomal protein S4 [Dokdonia donghaensis MED134] gi|85816811|gb|EAQ37996.1| 30S ribosomal protein S4 [Dokdonia donghaensis MED134] Length = 201 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFSEAIFGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAVQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR+++ A+R+ G T L+ E RLD +VYR P+ ARQ V HR Sbjct: 60 YTYG-ILERQFRNMYDRANRAPGITGEVLLQLCECRLDNVVYRMGMSPSRSGARQLVGHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDVI V++KSK L V+ S V E+I+ N+D TF Sbjct: 119 HITVNGNIVNIPSYQVKAGDVIAVREKSKSL-EVISNSLSNASHVFEWITWNNDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P + +VE YS+ Sbjct: 178 VAVPQRLQ---IPENINTQFIVELYSK 201 >gi|260779479|ref|ZP_05888369.1| SSU ribosomal protein S4p (S9e) [Vibrio coralliilyticus ATCC BAA-450] gi|260604288|gb|EEX30592.1| SSU ribosomal protein S4p (S9e) [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|237752998|ref|ZP_04583478.1| 30s ribosomal protein s4 [Helicobacter winghamensis ATCC BAA-430] gi|229375265|gb|EEO25356.1| 30s ribosomal protein s4 [Helicobacter winghamensis ATCC BAA-430] Length = 208 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS ++ R YGPG HGQRR K S +G+QLR Sbjct: 1 MARYRGPVEKIERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQRR-GKISEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG +SEK+FR+IF EA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKARMMYG-VSEKQFRAIFVEANRLEGNTGENLVKLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+LV+G+ ++I S G +E+ +K+K+ V A +L ++ + ++ V+ D Sbjct: 119 LVVHGHILVDGKKLDIPSALVGVGQKVEICEKTKKNPQVQRAIELTKQTGIAPWVDVDQD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V P+ + L+VE YS+ Sbjct: 179 KVFGIFTRLPER-EEVVIPI--EEKLIVELYSK 208 >gi|15924709|ref|NP_372243.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu50] gi|15927296|ref|NP_374829.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus N315] gi|21283391|ref|NP_646479.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MW2] gi|49486544|ref|YP_043765.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57652018|ref|YP_186603.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus COL] gi|82751307|ref|YP_417048.1| 30S ribosomal protein S4 [Staphylococcus aureus RF122] gi|87159914|ref|YP_494360.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195529|ref|YP_500334.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268198|ref|YP_001247141.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus JH9] gi|150394266|ref|YP_001316941.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus JH1] gi|151221825|ref|YP_001332647.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980036|ref|YP_001442295.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu3] gi|161509934|ref|YP_001575593.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315106|ref|ZP_04838319.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732369|ref|ZP_04866534.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006504|ref|ZP_05145105.2| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794103|ref|ZP_05643082.1| 30S ribosomal protein S4 [Staphylococcus aureus A9781] gi|258415807|ref|ZP_05682078.1| 30S ribosomal protein S4 [Staphylococcus aureus A9763] gi|258424134|ref|ZP_05687016.1| SSU ribosomal protein S4 [Staphylococcus aureus A9635] gi|258438286|ref|ZP_05689570.1| ribosomal protein S4 [Staphylococcus aureus A9299] gi|258443744|ref|ZP_05692083.1| ribosomal protein S4 [Staphylococcus aureus A8115] gi|258445955|ref|ZP_05694131.1| 30S ribosomal protein S4 [Staphylococcus aureus A6300] gi|258448365|ref|ZP_05696482.1| ribosomal protein S4 [Staphylococcus aureus A6224] gi|258450886|ref|ZP_05698939.1| 30S ribosomal protein S4 [Staphylococcus aureus A5948] gi|258454155|ref|ZP_05702126.1| SSU ribosomal protein S4P [Staphylococcus aureus A5937] gi|262049033|ref|ZP_06021911.1| 30S ribosomal protein S4 [Staphylococcus aureus D30] gi|262051784|ref|ZP_06024001.1| 30S ribosomal protein S4 [Staphylococcus aureus 930918-3] gi|269203358|ref|YP_003282627.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ED98] gi|282893214|ref|ZP_06301448.1| 30S ribosomal protein S4 [Staphylococcus aureus A8117] gi|282916980|ref|ZP_06324738.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus D139] gi|282924410|ref|ZP_06332083.1| 30S ribosomal protein S4 [Staphylococcus aureus A9765] gi|282927849|ref|ZP_06335460.1| 30S ribosomal protein S4 [Staphylococcus aureus A10102] gi|283770798|ref|ZP_06343690.1| small subunit ribosomal protein S4 [Staphylococcus aureus subsp. aureus H19] gi|284024766|ref|ZP_06379164.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 132] gi|294849881|ref|ZP_06790620.1| 30S ribosomal protein S4 [Staphylococcus aureus A9754] gi|295406030|ref|ZP_06815838.1| 30S ribosomal protein S4 [Staphylococcus aureus A8819] gi|296276442|ref|ZP_06858949.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MR1] gi|297207568|ref|ZP_06924003.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245044|ref|ZP_06928921.1| 30S ribosomal protein S4 [Staphylococcus aureus A8796] gi|300911649|ref|ZP_07129093.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH70] gi|304380688|ref|ZP_07363359.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039510|sp|P66563|RS4_STAAN RecName: Full=30S ribosomal protein S4 gi|54039511|sp|P66564|RS4_STAAW RecName: Full=30S ribosomal protein S4 gi|54041963|sp|P66562|RS4_STAAM RecName: Full=30S ribosomal protein S4 gi|56749380|sp|Q6G8K8|RS4_STAAS RecName: Full=30S ribosomal protein S4 gi|62287184|sp|Q5HF54|RS4_STAAC RecName: Full=30S ribosomal protein S4 gi|90101727|sp|Q2YTH0|RS4_STAAB RecName: Full=30S ribosomal protein S4 gi|122539301|sp|Q2FXK6|RS4_STAA8 RecName: Full=30S ribosomal protein S4 gi|123485448|sp|Q2FG18|RS4_STAA3 RecName: Full=30S ribosomal protein S4 gi|171769945|sp|A7X3F0|RS4_STAA1 RecName: Full=30S ribosomal protein S4 gi|172048947|sp|A6QHQ3|RS4_STAAE RecName: Full=30S ribosomal protein S4 gi|189045401|sp|A6U2I6|RS4_STAA2 RecName: Full=30S ribosomal protein S4 gi|189045402|sp|A5ITP2|RS4_STAA9 RecName: Full=30S ribosomal protein S4 gi|189045403|sp|A8Z2N6|RS4_STAAT RecName: Full=30S ribosomal protein S4 gi|13701514|dbj|BAB42808.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus N315] gi|14247491|dbj|BAB57881.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu50] gi|21204831|dbj|BAB95527.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MW2] gi|49244987|emb|CAG43448.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57286204|gb|AAW38298.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus COL] gi|82656838|emb|CAI81267.1| 30S ribosomal protein S4 [Staphylococcus aureus RF122] gi|87125888|gb|ABD20402.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203087|gb|ABD30897.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741267|gb|ABQ49565.1| SSU ribosomal protein S4P [Staphylococcus aureus subsp. aureus JH9] gi|149946718|gb|ABR52654.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus JH1] gi|150374625|dbj|BAF67885.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156722171|dbj|BAF78588.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu3] gi|160368743|gb|ABX29714.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723891|gb|EES92620.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257788075|gb|EEV26415.1| 30S ribosomal protein S4 [Staphylococcus aureus A9781] gi|257839400|gb|EEV63873.1| 30S ribosomal protein S4 [Staphylococcus aureus A9763] gi|257845755|gb|EEV69787.1| SSU ribosomal protein S4 [Staphylococcus aureus A9635] gi|257848330|gb|EEV72321.1| ribosomal protein S4 [Staphylococcus aureus A9299] gi|257851150|gb|EEV75093.1| ribosomal protein S4 [Staphylococcus aureus A8115] gi|257855197|gb|EEV78136.1| 30S ribosomal protein S4 [Staphylococcus aureus A6300] gi|257858333|gb|EEV81218.1| ribosomal protein S4 [Staphylococcus aureus A6224] gi|257861422|gb|EEV84230.1| 30S ribosomal protein S4 [Staphylococcus aureus A5948] gi|257863607|gb|EEV86364.1| SSU ribosomal protein S4P [Staphylococcus aureus A5937] gi|259160278|gb|EEW45305.1| 30S ribosomal protein S4 [Staphylococcus aureus 930918-3] gi|259162850|gb|EEW47414.1| 30S ribosomal protein S4 [Staphylococcus aureus D30] gi|262075648|gb|ACY11621.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ED98] gi|269941198|emb|CBI49586.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TW20] gi|282319467|gb|EFB49819.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus D139] gi|282590359|gb|EFB95438.1| 30S ribosomal protein S4 [Staphylococcus aureus A10102] gi|282592911|gb|EFB97914.1| 30S ribosomal protein S4 [Staphylococcus aureus A9765] gi|282764532|gb|EFC04658.1| 30S ribosomal protein S4 [Staphylococcus aureus A8117] gi|283460945|gb|EFC08035.1| small subunit ribosomal protein S4 [Staphylococcus aureus subsp. aureus H19] gi|283470985|emb|CAQ50196.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus ST398] gi|285817402|gb|ADC37889.1| 30S ribosomal protein S4 [Staphylococcus aureus 04-02981] gi|294823220|gb|EFG39650.1| 30S ribosomal protein S4 [Staphylococcus aureus A9754] gi|294969027|gb|EFG45048.1| 30S ribosomal protein S4 [Staphylococcus aureus A8819] gi|296887585|gb|EFH26483.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178124|gb|EFH37372.1| 30S ribosomal protein S4 [Staphylococcus aureus A8796] gi|298694988|gb|ADI98210.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ED133] gi|300887070|gb|EFK82271.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH70] gi|302333384|gb|ADL23577.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus JKD6159] gi|304340795|gb|EFM06724.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830098|emb|CBX34940.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130645|gb|EFT86631.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus CGS03] gi|315197186|gb|EFU27525.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus CGS01] gi|320141663|gb|EFW33498.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA131] gi|320143817|gb|EFW35590.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA177] gi|323440736|gb|EGA98445.1| 30S ribosomal protein S4 [Staphylococcus aureus O11] gi|323442976|gb|EGB00598.1| 30S ribosomal protein S4 [Staphylococcus aureus O46] gi|329314393|gb|AEB88806.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus T0131] gi|329726987|gb|EGG63444.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus 21189] gi|329727555|gb|EGG64011.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus 21172] gi|329733129|gb|EGG69466.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus 21193] Length = 200 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|253734496|ref|ZP_04868661.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH130] gi|253727550|gb|EES96279.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH130] Length = 200 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TF+ Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIIESVEI-NNFVPEYLNFDADSLTGTFI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|300775038|ref|ZP_07084901.1| 30S ribosomal protein S4 [Chryseobacterium gleum ATCC 35910] gi|300506853|gb|EFK37988.1| 30S ribosomal protein S4 [Chryseobacterium gleum ATCC 35910] Length = 202 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 121/208 (58%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI R+ G ++G K+ ++ PG HG +RR +K S + +QL KQK Sbjct: 1 MARYIGPKTKIARKFGAAIYGDDKNFEKRKNQPPGQHGPNKRRGAKKSEYAVQLAEKQKA 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F ++F +A RS+G T L+ ESRLD +VYR F T AARQ V+H Sbjct: 61 KYTYG-ILERQFANLFDKAHRSKGVTGEVLLQLCESRLDNVVYRFGFAKTRSAARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RH+ VNG +NI SY K GDVI V++KSK L V A LA + E++ N + T Sbjct: 120 RHITVNGEILNIPSYLVKAGDVIAVREKSKSLEVVTNA--LASKSNYEWLQFNDEKKEGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV P ++ P ++ NL+VE YS+ Sbjct: 178 FVSAPERIQ---IPEDIKENLIVELYSK 202 >gi|186477562|ref|YP_001859032.1| 30S ribosomal protein S4 [Burkholderia phymatum STM815] gi|226697817|sp|B2JI40|RS4_BURP8 RecName: Full=30S ribosomal protein S4 gi|184194021|gb|ACC71986.1| ribosomal protein S4 [Burkholderia phymatum STM815] Length = 207 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDVI V++++K+ A +LEA LAE+ +P++++V+ Sbjct: 117 QLVSHKAITVNGVVANIPSLQVKAGDVIAVREQAKKQARILEALSLAEQGGLPQWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKSMPER-SDIAGDI--NESLIVELYSR 207 >gi|241664507|ref|YP_002982867.1| 30S ribosomal protein S4 [Ralstonia pickettii 12D] gi|240866534|gb|ACS64195.1| ribosomal protein S4 [Ralstonia pickettii 12D] Length = 207 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKTGDVIAIREKSKKQVRIAESLTLAEQTGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF ++P D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQVPDR-ADIAGDI--NESLIVELYSR 207 >gi|152972204|ref|YP_001337350.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206575742|ref|YP_002236302.1| ribosomal protein S4 [Klebsiella pneumoniae 342] gi|238896793|ref|YP_002921538.1| 30S ribosomal protein S4 [Klebsiella pneumoniae NTUH-K2044] gi|262045155|ref|ZP_06018182.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288933290|ref|YP_003437349.1| ribosomal protein S4 [Klebsiella variicola At-22] gi|290512092|ref|ZP_06551460.1| 30S ribosomal protein S4 [Klebsiella sp. 1_1_55] gi|330002271|ref|ZP_08304265.1| ribosomal protein S4 [Klebsiella sp. MS 92-3] gi|172052444|sp|A6TEU9|RS4_KLEP7 RecName: Full=30S ribosomal protein S4 gi|226699076|sp|B5XNB5|RS4_KLEP3 RecName: Full=30S ribosomal protein S4 gi|150957053|gb|ABR79083.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206564800|gb|ACI06576.1| ribosomal protein S4 [Klebsiella pneumoniae 342] gi|238549120|dbj|BAH65471.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037475|gb|EEW38719.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888019|gb|ADC56337.1| ribosomal protein S4 [Klebsiella variicola At-22] gi|289775882|gb|EFD83882.1| 30S ribosomal protein S4 [Klebsiella sp. 1_1_55] gi|328537344|gb|EGF63594.1| ribosomal protein S4 [Klebsiella sp. MS 92-3] Length = 206 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRQPER-SDLSADI--NEHLIVELYSK 206 >gi|20808633|ref|NP_623804.1| 30S ribosomal protein S4 [Thermoanaerobacter tengcongensis MB4] gi|26399396|sp|Q8R7Y1|RS4_THETN RecName: Full=30S ribosomal protein S4 gi|20517267|gb|AAM25408.1| Ribosomal protein S4 and related proteins [Thermoanaerobacter tengcongensis MB4] Length = 206 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 6/183 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ R Y PG HGQ +K K + +G+QLR KQK+K+YYG I E++F ++ A+R RG Sbjct: 30 KCPLAKRGYAPGQHGQEKK-KLTQYGMQLREKQKLKRYYG-ILERQFVRYYERAERMRGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR F + ARQ V+H H+ VNG+ V+I SY K GDVI V Sbjct: 88 TGENLLQLLERRLDNVVYRLGFAVSRAQARQLVSHGHIEVNGKKVDIPSYLVKPGDVISV 147 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K+ S+ + + ++ R+VP+++ +N D V +P + + PV Q +L+VE Sbjct: 148 KESSRSMELIKNNLEMG-RNVPDWLELNKDAFEGRVVSLPRR-EHIDLPV--QEHLIVEL 203 Query: 204 YSR 206 YS+ Sbjct: 204 YSK 206 >gi|239996313|ref|ZP_04716837.1| 30S ribosomal protein S4 [Alteromonas macleodii ATCC 27126] gi|332142182|ref|YP_004427920.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Deep ecotype'] gi|226697796|sp|B4RT52|RS4_ALTMD RecName: Full=30S ribosomal protein S4 gi|327552204|gb|AEA98922.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Deep ecotype'] Length = 206 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RR + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGARR-GRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI S+ DV+ V++K+K+ A ++ A +LA +R+ P +I V+ Sbjct: 116 QLVSHKAIMVNGQVVNIPSFNVSAEDVVSVREKAKKQARIVAALELADQREKPTWIEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R+P D+ + Q L+VE YS+ Sbjct: 176 SKMEGTFKRVPER-TDLSAEINEQ--LIVELYSK 206 >gi|299065440|emb|CBJ36609.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum CMR15] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKSGDVVTIREKSKKQVRIAESLSLAEQTGFPGWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDR-ADIAGDI--NESLIVELYSR 207 >gi|212218098|ref|YP_002304885.1| 30S ribosomal protein S4 [Coxiella burnetii CbuK_Q154] gi|226697829|sp|B6J5F6|RS4_COXB1 RecName: Full=30S ribosomal protein S4 gi|212012360|gb|ACJ19740.1| SSU ribosomal protein S4P [Coxiella burnetii CbuK_Q154] Length = 206 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+H QRR + + +G+QLR KQ +K+YY D+ EK+F + +K+ADR +G T NL+ LE Sbjct: 38 PGMHWQRR-GRTTDYGVQLRMKQMIKRYY-DVLEKQFANYYKQADRLKGSTGDNLLKLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T ARQ ++H+ +LVNG VNI SY+ K GD+IEV+ ++K + Sbjct: 96 SRLDNVVYRMGFSATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLRI 155 Query: 154 LEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +LA++ P +I V+ M TF P P + NLVVE YS+ Sbjct: 156 KGALELAQQRAPISWIEVDTKKMTGTFKEQPDV---AELPAEFKVNLVVELYSK 206 >gi|83748174|ref|ZP_00945201.1| SSU ribosomal protein S4P [Ralstonia solanacearum UW551] gi|207744551|ref|YP_002260943.1| 30s ribosomal protein s4 [Ralstonia solanacearum IPO1609] gi|83725142|gb|EAP72293.1| SSU ribosomal protein S4P [Ralstonia solanacearum UW551] gi|206595957|emb|CAQ62884.1| 30s ribosomal protein s4 [Ralstonia solanacearum IPO1609] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ M TF Sbjct: 124 ILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDAKKMEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P + D+ + +L+VE YSR Sbjct: 184 KQAPDRV-DIAGDI--NESLIVELYSR 207 >gi|187476573|ref|YP_784597.1| 30S ribosomal protein S4 [Bordetella avium 197N] gi|123515214|sp|Q2L242|RS4_BORA1 RecName: Full=30S ribosomal protein S4 gi|115421159|emb|CAJ47643.1| 30S ribosomal protein S4 [Bordetella avium 197N] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR + +NG + +I S K GDVI V++ +K+ A + E+ LA +P+++ V+ Sbjct: 117 QLVSHRAIELNGHTADIASMLVKAGDVITVREGAKKQARIRESLDLAASIGIPQWVEVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M TF + P DV V ++VVE YSR Sbjct: 177 NKMTGTF-KSPPDRADVARDV--NESMVVELYSR 207 >gi|217077309|ref|YP_002335027.1| 30S ribosomal protein S4 [Thermosipho africanus TCF52B] gi|226695088|sp|B7IHX2|RS4_THEAB RecName: Full=30S ribosomal protein S4 gi|217037164|gb|ACJ75686.1| ribosomal protein S4 [Thermosipho africanus TCF52B] Length = 209 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K + R + PG HG R K K + +G+QLRA Sbjct: 1 MARYTGPQCKLCRREGMKLYLKGERCFTDKCAFDRRPFAPGDHG-RDKKKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ MK+ YG + E +FR ++ A R GDT NL+ +E RLD +VYR F ARQ Sbjct: 60 KQTMKRIYG-VLETQFRRYYETASRKSGDTRENLVVQVERRLDNVVYRLGFAVNRTTARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH HVLVNGR V I SY+ + GDVIE+++KS+ + V A +L +++ +++V+++ Sbjct: 119 LVNHGHVLVNGRKVTIPSYQVRPGDVIEIREKSRDILPVKNAIELNKDKNTMPWLTVDYE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N T+ R P + + PV +Q ++E YSR Sbjct: 179 NYKGTYERNPKLEEVIDLPVDVQA--IIELYSR 209 >gi|17547713|ref|NP_521115.1| 30S ribosomal protein S4 [Ralstonia solanacearum GMI1000] gi|26399428|sp|Q8XV37|RS4_RALSO RecName: Full=30S ribosomal protein S4 gi|17430018|emb|CAD16703.1| probable 30s ribosomal protein s4 [Ralstonia solanacearum GMI1000] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQTGFPGWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDR-GDIAGDI--NESLIVELYSR 207 >gi|121609261|ref|YP_997068.1| 30S ribosomal protein S4 [Verminephrobacter eiseniae EF01-2] gi|152112272|sp|A1WK93|RS4_VEREI RecName: Full=30S ribosomal protein S4 gi|121553901|gb|ABM58050.1| SSU ribosomal protein S4P [Verminephrobacter eiseniae EF01-2] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ A+ +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAAESRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GD++ V++KSK+ + EA QLA + +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIPSYLVKTGDLVAVREKSKKQGRIAEALQLATQVGMPAWVEVNT 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F + P +D + + +L+VE YSR Sbjct: 177 EKAEGLFKKAPD--RD-EFGADINESLIVELYSR 207 >gi|160915194|ref|ZP_02077407.1| hypothetical protein EUBDOL_01202 [Eubacterium dolichum DSM 3991] gi|158432993|gb|EDP11282.1| hypothetical protein EUBDOL_01202 [Eubacterium dolichum DSM 3991] Length = 200 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 124/212 (58%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G ++ + R+Y PG HG ++ K + +GLQLR KQK++ Sbjct: 1 MSRINGPVWKTSRRLGFSIL-ETGEELQRRAYAPGQHGPTKRVKLTQYGLQLREKQKIRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F +A + +G N ++ LESRLD +VYR F T AARQ VNH H Sbjct: 60 MYG-LNERQFYNLFTKASKMKGVKGDNFLALLESRLDNLVYRMGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SY K G VIEVK+KSK L + EA + A + ++ VN D T++ Sbjct: 119 ILVNGKKVDIPSYIAKPGAVIEVKEKSKNLQVINEALE-ASLNTVAFVDVNKDAKKGTYL 177 Query: 181 RIP------SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S + ++ LVVEFY+R Sbjct: 178 RLPERNELNSEINEL---------LVVEFYNR 200 >gi|311277749|ref|YP_003939980.1| ribosomal protein S4 [Enterobacter cloacae SCF1] gi|308746944|gb|ADO46696.1| ribosomal protein S4 [Enterobacter cloacae SCF1] Length = 206 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ K DV+ V++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVKANDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRQPER-SDLSADI--NEHLIVELYSK 206 >gi|194290998|ref|YP_002006905.1| 30S ribosomal protein s4 [Cupriavidus taiwanensis LMG 19424] gi|226697831|sp|B3R7E4|RS4_CUPTR RecName: Full=30S ribosomal protein S4 gi|193224833|emb|CAQ70844.1| 30S ribosomal subunit protein S4 [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSSRRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI ++++SK+ + EA LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPDR-ADISGDI--NESLIVELYSR 207 >gi|307731230|ref|YP_003908454.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1003] gi|307585765|gb|ADN59163.1| ribosomal protein S4 [Burkholderia sp. CCGE1003] Length = 207 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 125/207 (60%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++VNG NI S + K GDV+ V+++SK+ A +LEA LAE+ +P ++SV+ TF Sbjct: 124 IMVNGVVSNIPSMQVKAGDVVAVREQSKKQARILEALSLAEQGGMPSWVSVDSKKFEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+ + +L+VE YSR Sbjct: 184 KQKPER-SDIAGDI--NESLIVELYSR 207 >gi|118579144|ref|YP_900394.1| 30S ribosomal protein S4 [Pelobacter propionicus DSM 2379] gi|152112242|sp|A1ALW6|RS4_PELPD RecName: Full=30S ribosomal protein S4 gi|118501854|gb|ABK98336.1| SSU ribosomal protein S4P [Pelobacter propionicus DSM 2379] Length = 208 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 115/184 (62%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R +K S +G+QLR KQK+++ YG + E +FR F EADR +G Sbjct: 30 KCAIKRRNYPPGQHGQGR-TKNSAYGIQLREKQKVRRIYG-LMENQFRGYFAEADRMKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+S LE RLD +VYR F + +RQ V H H +NG+ V+I S + + GDVIE+ Sbjct: 88 TGENLLSLLERRLDNVVYRLGFASSRSESRQLVRHGHFTLNGKKVDIPSIQTRVGDVIEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+++ S+ +A +A R +P+++ ++ D +P +DV P+ Q LVVE Sbjct: 148 REKSRKIVSINDALDAVARRGIPQWLELDRDAFKGNLKALPVR-EDVTTPI--QEQLVVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|34499616|ref|NP_903831.1| 30S ribosomal protein S4 [Chromobacterium violaceum ATCC 12472] gi|41017823|sp|Q7NQH6|RS4_CHRVO RecName: Full=30S ribosomal protein S4 gi|34105467|gb|AAQ61822.1| 30S ribosomal protein S4 [Chromobacterium violaceum ATCC 12472] Length = 206 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG RR + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRALDSKCKLDAAPGQHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ F EA R +G T NL+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRNYFAEAVRRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI SY+ K GDV+ V++K+K+ A ++E LAE+ P ++SV+ M Sbjct: 119 SHKAIVVNGQVVNIPSYQVKAGDVVSVREKAKKQARIVEGLALAEQGGFPSWVSVDSKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + + LVVEFYS+ Sbjct: 179 EGTFKSAP---ERSELSSDINEQLVVEFYSK 206 >gi|238025957|ref|YP_002910188.1| 30S ribosomal protein S4 [Burkholderia glumae BGR1] gi|237875151|gb|ACR27484.1| 30S ribosomal protein S4 [Burkholderia glumae BGR1] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG + NI S + K GDVI +++KSK+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGVASNIPSLQVKPGDVIAIREKSKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQVP---ERAEIAGDINESLIVELYSR 207 >gi|83591248|ref|YP_431257.1| 30S ribosomal protein S4 [Moorella thermoacetica ATCC 39073] gi|123725621|sp|Q2RFS5|RS4_MOOTA RecName: Full=30S ribosomal protein S4 gi|83574162|gb|ABC20714.1| SSU ribosomal protein S4P [Moorella thermoacetica ATCC 39073] Length = 208 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 123/214 (57%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + S ++ RR G L+ + K V RSY PG HGQ RK K S +GLQLR Sbjct: 1 MARYKDSTCRLCRREGTKLFLKGDRCYSDKCAVARRSYPPGQHGQGRK-KVSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++FR+ F++A+R +G T NL+ LE RLD +VYR F + AR Sbjct: 60 KQKVRRIYG-ILERQFRNYFEKAERQKGVTGENLLILLERRLDNVVYRLGFADSRAEART 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H LVNGR VNI SY + GD I V++KSK E A A R+VP ++ + Sbjct: 119 LVRHGHFLVNGRKVNIPSYLVRPGDTISVREKSKASPKFKEIAEAAAHRNVPAWLKADSS 178 Query: 174 NMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + + +P+ + D P Q +L+VE YSR Sbjct: 179 TLEGHVLALPTREQIDTP----AQEHLIVELYSR 208 >gi|312795803|ref|YP_004028725.1| SSU ribosomal protein S4P [Burkholderia rhizoxinica HKI 454] gi|312167578|emb|CBW74581.1| SSU ribosomal protein S4P [Burkholderia rhizoxinica HKI 454] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLDT+VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDTVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+ NI S + K GDV+ V++++K+ + EA LAE+ + P ++SV+ Sbjct: 117 QLVSHKAITVNGQVANIPSLQVKAGDVVAVREQAKKQTRIQEALSLAEQNNFPGWVSVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKHVPER-SDIAGDI--NESLIVELYSR 207 >gi|300702805|ref|YP_003744406.1| 30S ribosomal protein S4 [Ralstonia solanacearum CFBP2957] gi|299070467|emb|CBJ41762.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum CFBP2957] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 130/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGANLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKAGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P + D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDRV-DIAGDI--NESLIVELYSR 207 >gi|253995743|ref|YP_003047807.1| 30S ribosomal protein S4 [Methylotenera mobilis JLW8] gi|253982422|gb|ACT47280.1| ribosomal protein S4 [Methylotenera mobilis JLW8] Length = 209 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 124/215 (57%), Gaps = 15/215 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R++ PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKAEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FRS + EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 61 KQKVRRIYG-VLEGQFRSYYAEADRQKGITGENLLQLLECRLDNVTYRMGLGGSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H +LVNG+ VNI SY+ K GDVI V + SK ++ LEA++ +R PE++ V+ Sbjct: 120 IVRHNSILVNGKRVNIPSYQVKAGDVISVAEASKTQLRIKGALEAAE--QRGFPEWLDVD 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P +D P I + +LVVE YS+ Sbjct: 178 VKALKGTFKAKPQ--RDELPPTINE-SLVVELYSK 209 >gi|83720741|ref|YP_443547.1| 30S ribosomal protein S4 [Burkholderia thailandensis E264] gi|167582598|ref|ZP_02375472.1| 30S ribosomal protein S4 [Burkholderia thailandensis TXDOH] gi|167620712|ref|ZP_02389343.1| 30S ribosomal protein S4 [Burkholderia thailandensis Bt4] gi|257137667|ref|ZP_05585929.1| 30S ribosomal protein S4 [Burkholderia thailandensis E264] gi|123536225|sp|Q2SU52|RS4_BURTA RecName: Full=30S ribosomal protein S4 gi|83654566|gb|ABC38629.1| ribosomal protein S4 [Burkholderia thailandensis E264] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|312884679|ref|ZP_07744380.1| 30S ribosomal protein S4 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367592|gb|EFP95143.1| 30S ribosomal protein S4 [Vibrio caribbenthicus ATCC BAA-2122] Length = 206 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+F + +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFHNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGSKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATF R+P D+ + Q L+VE YS+ Sbjct: 179 EATFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|113869406|ref|YP_727895.1| 30S ribosomal protein S4 [Ralstonia eutropha H16] gi|123032616|sp|Q0K644|RS4_RALEH RecName: Full=30S ribosomal protein S4 gi|113528182|emb|CAJ94527.1| SSU ribosomal protein S4 [Ralstonia eutropha H16] Length = 207 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ ++++SK+ + EA LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQTLNVPSAQIKSGDVVTIREQSKKQVRIAEALSLAEQSGFPTWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPDR-ADISGDI--NESLIVELYSR 207 >gi|109897338|ref|YP_660593.1| 30S ribosomal protein S4 [Pseudoalteromonas atlantica T6c] gi|122972198|sp|Q15X49|RS4_PSEA6 RecName: Full=30S ribosomal protein S4 gi|109699619|gb|ABG39539.1| SSU ribosomal protein S4P [Pseudoalteromonas atlantica T6c] gi|332175075|gb|AEE24329.1| ribosomal protein S4 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 206 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG RR + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDN---APGQHGARR-GRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRIGFASTRSEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ +LVNG+ VN+ S+ DV+ V++K+K+ A ++ A +LAE R+ P +I V+ Sbjct: 116 QLVSHKAILVNGQVVNVPSFNVSADDVVSVREKAKKQARIVSALELAEQREKPTWIEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R+P D+ + Q L+VE YS+ Sbjct: 176 KKMEGTFKRVPER-TDLSAEINEQ--LIVELYSK 206 >gi|262273355|ref|ZP_06051169.1| SSU ribosomal protein S4p (S9e) [Grimontia hollisae CIP 101886] gi|262222333|gb|EEY73644.1| SSU ribosomal protein S4p (S9e) [Grimontia hollisae CIP 101886] Length = 206 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 131/211 (62%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DVI +++K+K A + A ++ A+R++P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFKVTANDVISIREKAKNQARIKAALEIAAQRELPTWIEVDSNKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADI--NEHLIVELYSK 206 >gi|319952171|ref|YP_004163438.1| ssu ribosomal protein s4p [Cellulophaga algicola DSM 14237] gi|319420831|gb|ADV47940.1| SSU ribosomal protein S4P [Cellulophaga algicola DSM 14237] Length = 201 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R++ PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYIGPKTKIARKFGEAIFGDDKS-FEKRNFPPGQHGNARRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR+IF A R G T L+ E RLD +V+R + ARQ V+HR Sbjct: 60 YTYG-ILEKQFRNIFASAKRKEGVTGEILLQLCECRLDNVVFRMGVSNSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK ++++ +A + V E+++ N + M TF Sbjct: 119 HITVNGELVNIPSYSLKSGDVVGVREKSKSISTIQDA-LASNSSVYEWMTWNTEKMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VAVPERLQ---IPENIKEQLIVELYSK 201 >gi|158520749|ref|YP_001528619.1| RNA-binding S4 domain-containing protein [Desulfococcus oleovorans Hxd3] gi|226732176|sp|A8ZV81|RS4_DESOH RecName: Full=30S ribosomal protein S4 gi|158509575|gb|ABW66542.1| RNA-binding S4 domain protein [Desulfococcus oleovorans Hxd3] Length = 208 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQ R K S +G+QLR KQK+K+ YG +SE +FR +F EADR +G Sbjct: 30 KCAFDRRGYPPGEHGQLR-PKFSGYGIQLREKQKVKRMYG-LSEGQFRRVFAEADRRKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LESRLD VYR FV + RQ + H H LVNG++V+I SY GDVIEV Sbjct: 88 TGSTLLVLLESRLDNAVYRLGFVNSRTQGRQLIRHNHFLVNGKNVDIPSYVLSPGDVIEV 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ + + E+ E R VP+++S+ +N +P +D+ P+ Q L+VE Sbjct: 148 REKSRNMQVIDESLAAVERRGVPQWLSLEKENKRGVVKNLPVR-EDITIPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|300309481|ref|YP_003773573.1| 30S ribosomal protein S4 [Herbaspirillum seropedicae SmR1] gi|300072266|gb|ADJ61665.1| 30S ribosomal subunit S4 protein [Herbaspirillum seropedicae SmR1] Length = 207 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGNQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T L+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 MYG-VLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 + VNG+ VNI SY K GDVI V++K+K+ + EA LAE + P+++SV+ + TF Sbjct: 124 LTVNGQVVNIASYSVKAGDVIAVREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 SS + +L+VE YSR Sbjct: 184 ---KSSPDRSEIAADVNESLIVELYSR 207 >gi|262370554|ref|ZP_06063879.1| ribosomal protein S4 [Acinetobacter johnsonii SH046] gi|262314354|gb|EEY95396.1| ribosomal protein S4 [Acinetobacter johnsonii SH046] Length = 208 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 122/212 (57%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTR--SYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HG R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKAAKAPGQHGGARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ ++H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAVELAAQRGIPSWMEIDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|192359460|ref|YP_001981232.1| 30S ribosomal protein S4 [Cellvibrio japonicus Ueda107] gi|226697819|sp|B3PK61|RS4_CELJU RecName: Full=30S ribosomal protein S4 gi|190685625|gb|ACE83303.1| ribosomal protein S4 [Cellvibrio japonicus Ueda107] Length = 206 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 120/205 (58%), Gaps = 16/205 (7%) Query: 10 KIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 K+ RR G +L+ + K + T PG HGQRR + S +G+QLR KQK+++ Y Sbjct: 10 KLSRREGTDLFLKSGARALDSKCKIET---APGQHGQRR-GRLSDYGVQLREKQKVRRIY 65 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G + EK+FR +KEA R +G T NL+ LESRLD +VYR F T +RQ V+H+ + Sbjct: 66 G-VLEKQFRGYYKEAARRKGATGENLLKLLESRLDNVVYRMGFGATRSESRQLVSHKAIS 124 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVR 181 VNG++VN+ S++ GDV+ V++K+K + A LA +R E++ VN + F R Sbjct: 125 VNGKTVNVASFQVAAGDVVAVREKAKNQLRIQSALNLAGQRSNVEWVDVNTEKKEGVFKR 184 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P V P + NL+VE YS+ Sbjct: 185 VPDR---VDLPADINENLIVELYSK 206 >gi|226356866|ref|YP_002786606.1| 30S ribosomal protein S4 [Deinococcus deserti VCD115] gi|259495272|sp|C1CXD5|RS4_DEIDV RecName: Full=30S ribosomal protein S4 gi|226318856|gb|ACO46852.1| putative 30S ribosomal protein S4 [Deinococcus deserti VCD115] Length = 206 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M + S K+ RR G NL K ++ R Y PG HGQRR + +PS + ++LR KQK Sbjct: 1 MGRFRGSITKLSRREGINLAETEKVQKYLDKRPYAPGQHGQRRGRGRPSDYSVRLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + + YG + EK+FR++F+EA G T + LE RLD +V+R F T ARQFV Sbjct: 61 LARLYG-MGEKQFRNLFEEAASVPGVTGTVFLQLLERRLDNVVFRMGFASTRRQARQFVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMV 176 H H+LVNG+ V+I SYR K GD I V + S+Q+ V E + + R V ++ ++ +N Sbjct: 120 HGHILVNGKKVDIPSYRVKIGDEISVFEGSRQMGFVQENMEAQKRRRVSPWVELDVENFK 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P+ +D+ P+ N ++E+YSR Sbjct: 180 GTFSRLPAR-EDLALPI--NENFIIEYYSR 206 >gi|255319791|ref|ZP_05360996.1| ribosomal protein S4 [Acinetobacter radioresistens SK82] gi|262380324|ref|ZP_06073478.1| ribosomal protein S4 [Acinetobacter radioresistens SH164] gi|255303110|gb|EET82322.1| ribosomal protein S4 [Acinetobacter radioresistens SK82] gi|262297770|gb|EEY85685.1| ribosomal protein S4 [Acinetobacter radioresistens SH164] Length = 207 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R +K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQSR-AKQSEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 60 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 119 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKSAIELAAQRGIPAWIEVDHSK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P D+P + +L+VE YS+ Sbjct: 179 FEGTFKAAPDR-SDLPAEI--NESLIVELYSK 207 >gi|298500604|ref|ZP_07010408.1| SSU ribosomal protein S4 [Vibrio cholerae MAK 757] gi|297540773|gb|EFH76830.1| SSU ribosomal protein S4 [Vibrio cholerae MAK 757] Length = 206 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 131/211 (62%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSRVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++AE R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADINEQ--LIVELYSK 206 >gi|297537555|ref|YP_003673324.1| 30S ribosomal protein S4 [Methylotenera sp. 301] gi|297256902|gb|ADI28747.1| ribosomal protein S4 [Methylotenera sp. 301] Length = 209 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 123/215 (57%), Gaps = 15/215 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R++ PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKAEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FRS + EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 61 KQKVRRIYG-VLEAQFRSYYAEADRQKGITGENLLQLLECRLDNVTYRMGLGGSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H +LVNGR VNI SY+ K GDV+ V + SK ++ LEA++ +R P +I V+ Sbjct: 120 IVRHNSILVNGRRVNIPSYQVKAGDVVSVAESSKTQLRIKGALEAAE--QRGFPAWIEVD 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P +D P I + +LVVE YS+ Sbjct: 178 VKALKGTFKAKPQ--RDELPPTINE-SLVVELYSK 209 >gi|89100095|ref|ZP_01172964.1| 30S ribosomal protein S4 [Bacillus sp. NRRL B-14911] gi|89085185|gb|EAR64317.1| 30S ribosomal protein S4 [Bacillus sp. NRRL B-14911] Length = 200 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRRKISEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VTERQFRNLFDKAGKMAGKHGENFMVLLESRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR + G I +++KS+ L V EA ++ VP++++ + D + +F Sbjct: 119 IIVDGGRVDIPSYRVQPGQTITLREKSRGLDIVKEAIEV-NNFVPDFLTFDADKLEGSFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|157377427|ref|YP_001476027.1| 30S ribosomal protein S4 [Shewanella sediminis HAW-EB3] gi|189045400|sp|A8G1C6|RS4_SHESH RecName: Full=30S ribosomal protein S4 gi|157319801|gb|ABV38899.1| ribosomal protein S4 [Shewanella sediminis HAW-EB3] Length = 206 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 132/214 (61%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL++ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DVI +++KSK+ A ++ A ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSANDVISIREKSKKQARIIAALEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 TKMEGAFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|189424436|ref|YP_001951613.1| 30S ribosomal protein S4 [Geobacter lovleyi SZ] gi|226699069|sp|B3E856|RS4_GEOLS RecName: Full=30S ribosomal protein S4 gi|189420695|gb|ACD95093.1| ribosomal protein S4 [Geobacter lovleyi SZ] Length = 208 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R SK S +G+QLR KQK+K+ YG + EK+FRS F ADR +G Sbjct: 30 KCALKRRNYPPGQHGQGR-SKTSDYGVQLREKQKVKRLYG-LLEKQFRSYFDRADRMKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+S LE RLD +VYR F + ARQ V H H ++NGR I S + K GD I + Sbjct: 88 TGENLLSLLERRLDNVVYRLGFASSRSEARQLVRHGHFVLNGRKATIPSIQVKAGDTIVL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ +A++ EA + R +P+++ ++ D +P +D+ P+ Q L+VE Sbjct: 148 REKSRNVAAISEALDAVVRRGIPQWLELDRDAFTGLAKTVPVR-EDISTPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|307266987|ref|ZP_07548503.1| ribosomal protein S4 [Thermoanaerobacter wiegelii Rt8.B1] gi|326390634|ref|ZP_08212189.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus JW 200] gi|306917972|gb|EFN48230.1| ribosomal protein S4 [Thermoanaerobacter wiegelii Rt8.B1] gi|325993312|gb|EGD51749.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus JW 200] Length = 206 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 116/186 (62%), Gaps = 12/186 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV R Y PG HGQ +K K + +G+QLR KQK+K+YYG + E++F ++EA+R +G Sbjct: 30 KCPVARRGYAPGQHGQEKK-KLTNYGMQLREKQKLKRYYG-VLERQFVRYYEEAERMKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR F + ARQ V+H H+ VNG+ V+I S+ K GDVI V Sbjct: 88 TGENLLQLLERRLDNVVYRLGFAASRPQARQLVSHGHIEVNGKKVDIPSFLVKPGDVISV 147 Query: 144 KQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++KS+ + + LE S R+VP+++ +N D V +P + + P+ Q +L+ Sbjct: 148 REKSRSMELIKNNLEVS----RNVPDWLELNKDAFEGRVVSLPRR-EHIDLPI--QEHLI 200 Query: 201 VEFYSR 206 VE YS+ Sbjct: 201 VELYSK 206 >gi|197287092|ref|YP_002152964.1| 30S ribosomal protein S4 [Proteus mirabilis HI4320] gi|227354912|ref|ZP_03839326.1| 30S ribosomal protein S4 [Proteus mirabilis ATCC 29906] gi|226699106|sp|B4F1K8|RS4_PROMH RecName: Full=30S ribosomal protein S4 gi|194684579|emb|CAR46428.1| 30S ribosomal protein S4 [Proteus mirabilis HI4320] gi|227164994|gb|EEI49833.1| 30S ribosomal protein S4 [Proteus mirabilis ATCC 29906] Length = 206 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|172044373|sp|A4JAR5|RS4_BURVG RecName: Full=30S ribosomal protein S4 Length = 207 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQMPER-ADIAGDI--NESLIVELYSR 207 >gi|311748488|ref|ZP_07722273.1| ribosomal protein S4 [Algoriphagus sp. PR1] gi|126577005|gb|EAZ81253.1| ribosomal protein S4 [Algoriphagus sp. PR1] Length = 201 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 121/208 (58%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE + G K+ + ++Y PG HG+ R+ K S + +QL KQK K Sbjct: 1 MARYTGPKAKIARKFGEPIEGHSKA-LQKKNYPPGQHGRGRRKKQSEYAIQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++F +F A R G T NL+ LE+RLD VYR PT ARQ V+H+H Sbjct: 60 IYG-ILERQFAKMFDIASRKSGITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD--NMVAT 178 +LVNG VNI SY K GD++ V+++SK L ++ + LA R +Y + D ++ Sbjct: 119 ILVNGELVNIPSYSLKPGDIVSVRERSKSLEAI--TNSLAGRGANKYSWLEWDGASLSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV +PS D+P V Q L+VE YS+ Sbjct: 177 FVSVPSR-DDIPENVKEQ--LIVELYSK 201 >gi|296332057|ref|ZP_06874521.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675548|ref|YP_003867220.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii str. W23] gi|296150828|gb|EFG91713.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413792|gb|ADM38911.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii str. W23] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L+SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY+ K G I V++KS+ L S+++ S VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYQVKPGQTIGVREKSRNL-SIIKESVEVNNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---INEALIVEFYSR 200 >gi|319789265|ref|YP_004150898.1| ribosomal protein S4 [Thermovibrio ammonificans HB-1] gi|317113767|gb|ADU96257.1| ribosomal protein S4 [Thermovibrio ammonificans HB-1] Length = 208 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 128/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + K +I RR+G N++ + KS ++ R Y PG HG+ R+ K SY+G QL Sbjct: 1 MGRYTGPKWRIARRLGVNIYVGEEKSQKGKSILDRRPYPPGQHGRSRR-KISYYGRQLME 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG + E++FR ++ A+R RG T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKVKYYYG-VREEQFRRFYEMAERMRGQTGENLLKLLESRLDNVVYRLGFGKSHRHARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+LVNG+ V+ SY K GDVIEVK+KS+ + + E +LA+ R +P ++ ++ + Sbjct: 119 LVVHGHILVNGKKVDRPSYLVKPGDVIEVKEKSRDIPQIKEGMELAQRRGIPSWLELDPE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N P+ + + ++ +L+VE YS+ Sbjct: 179 NFKGVVKAEPTREEIE---IPIEEHLIVELYSK 208 >gi|243180|gb|AAB21091.1| ribosomal protein S4 [Bacillus stearothermophilus, Peptide, 198 aa] Length = 198 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 7/197 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ YG ++E++ Sbjct: 9 KISRRLGISLSGTGKE-LQKRPYPPGQHGPGQR-KLSEYGLQLQEKQKLRHMYG-VNERQ 65 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 FR F+EA + G N + LESRLD +VYR T ARQ V H H++V+G VN Sbjct: 66 FRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHIIVDGSRVN 125 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 I SYR K G I V++KS+ L + EA + A +P+Y+S + + M T+ R+P + Sbjct: 126 IPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTRLPERSE-- 182 Query: 190 PYPVIMQPNLVVEFYSR 206 P + L+VEFYSR Sbjct: 183 -LPAEINEALIVEFYSR 198 >gi|15829187|ref|NP_326547.1| 30S ribosomal protein S4 [Mycoplasma pulmonis UAB CTIP] gi|26399464|sp|Q98PK6|RS4_MYCPU RecName: Full=30S ribosomal protein S4 gi|14090131|emb|CAC13889.1| 30S RIBOSOMAL PROTEIN S4 [Mycoplasma pulmonis] Length = 199 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/211 (42%), Positives = 128/211 (60%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ SS K RR+G ++ K + R+Y PG HGQRR +K S +GL L KQK+ Sbjct: 1 MSRDRSSLFKKSRRLGFSVLENEKEFNKGKKRNYAPGQHGQRR-TKLSDYGLHLYEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG ++E++F + FK++ + +G N + FLE RLD +VYRA F T ARQFVNH Sbjct: 60 KNLYG-VNERQFANSFKKSSKLKGVQGTNFLQFLEQRLDNLVYRAGFAETRRQARQFVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 HVLV+G+ V+I SYR G VIE+K+K ++ A VL ++ R +++SV + AT Sbjct: 119 GHVLVDGKKVDIPSYRVAVGKVIEIKEKLQKNAQVLRNKEI--RTAADWLSVK--DFKAT 174 Query: 179 FVRIPSS---LKDVPYPVIMQPNLVVEFYSR 206 F R+P LK+V +L+VEFY++ Sbjct: 175 FTRLPERNEFLKEV------NDSLIVEFYNK 199 >gi|223984454|ref|ZP_03634588.1| hypothetical protein HOLDEFILI_01882 [Holdemania filiformis DSM 12042] gi|223963578|gb|EEF67956.1| hypothetical protein HOLDEFILI_01882 [Holdemania filiformis DSM 12042] Length = 211 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G ++ + R+Y PG HG ++ K S +G QLR KQ+++ Sbjct: 12 MARNTGPVWKISRRLGFSIL-ETGEELQRRTYAPGQHGPTKRIKLSNYGTQLREKQRIRN 70 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + + +A++ G HN + LESRLD IVYR F T AARQ VNH H Sbjct: 71 MYG-VNERQFANTYIKAEKMAGVKGHNFLCLLESRLDNIVYRMGFARTRRAARQLVNHGH 129 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G +EVK+KSK +A + +A + A + +++V+ +N T+V Sbjct: 130 ILVNGKKVDIPSFTVKPGSTVEVKEKSKSMACIADALE-ATLNTVAFVTVDKENKKGTYV 188 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++ + LVVE+Y+R Sbjct: 189 RMPER-NELNQEI--NELLVVEYYNR 211 >gi|303256474|ref|ZP_07342488.1| ribosomal protein S4 [Burkholderiales bacterium 1_1_47] gi|331000668|ref|ZP_08324321.1| ribosomal protein S4 [Parasutterella excrementihominis YIT 11859] gi|302859965|gb|EFL83042.1| ribosomal protein S4 [Burkholderiales bacterium 1_1_47] gi|329570880|gb|EGG52591.1| ribosomal protein S4 [Parasutterella excrementihominis YIT 11859] Length = 207 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 17/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSY--------GPGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L KS V RS+ PG HG+ ++ S +G QL Sbjct: 1 MARYTGPKEKLARREGCDL--NLKSAV--RSFDSKCKSESAPGQHGRTSGARLSDYGAQL 56 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+K+ YG + E++FR F +A R RG+T L+S LESRLD +VYR F T A Sbjct: 57 REKQKVKRMYG-VLERQFRLYFAKAARKRGNTGEQLLSLLESRLDNVVYRMGFGCTRAEA 115 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVN 171 RQ V+H + VNG VNI SY K GDVI V++K+K + E+ +LAE + +P+++SV+ Sbjct: 116 RQLVSHCAISVNGNKVNIPSYSVKAGDVIAVREKAKNQVRIAESLKLAESNGLPDWVSVD 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF +P+ +D P + + +L+VE YSR Sbjct: 176 TKKLEGTFKNVPA--RDEICPDVNE-SLIVELYSR 207 >gi|34541515|ref|NP_905994.1| 30S ribosomal protein S4 [Porphyromonas gingivalis W83] gi|188995706|ref|YP_001929958.1| 30S ribosomal protein S4 [Porphyromonas gingivalis ATCC 33277] gi|41017819|sp|Q7MTN9|RS4_PORGI RecName: Full=30S ribosomal protein S4 gi|226699103|sp|B2RLW6|RS4_PORG3 RecName: Full=30S ribosomal protein S4 gi|34397832|gb|AAQ66893.1| ribosomal protein S4 [Porphyromonas gingivalis W83] gi|188595386|dbj|BAG34361.1| 30S ribosomal protein S4 [Porphyromonas gingivalis ATCC 33277] Length = 201 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ G+ ++G K ++ ++Y PG HG R+ K S +GLQLR KQK K Sbjct: 1 MARYTGPKSKIARKFGDPIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGLQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR +F A R++G T LI FLE+RLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRHLFHRAQRAKGVTGELLIQFLEARLDNVVFRLGIAPTRSAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V+++SK L + +A ++ + ++ + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVRERSKSLEVIADALTGFNHSKYPWMEWDQSSLSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P + Q L+VE YS+ Sbjct: 179 HMPDR-TDIPENIKEQ--LIVELYSK 201 >gi|253998040|ref|YP_003050103.1| 30S ribosomal protein S4 [Methylovorus sp. SIP3-4] gi|313200105|ref|YP_004038763.1| 30S ribosomal protein S4 [Methylovorus sp. MP688] gi|253984719|gb|ACT49576.1| ribosomal protein S4 [Methylovorus sp. SIP3-4] gi|312439421|gb|ADQ83527.1| ribosomal protein S4 [Methylovorus sp. MP688] Length = 209 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 124/215 (57%), Gaps = 15/215 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R++ PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FRS + EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 61 KQKVRRIYG-ILEGQFRSYYAEADRLKGITGENLLQLLECRLDNVAYRMGLGSSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H +LVNG+ VNI SY+ + GDV++V + SK ++ LEA++ +R PE++ V+ Sbjct: 120 IVRHNSILVNGKRVNIPSYQVRPGDVVQVAEASKSQLRIKGALEAAE--QRGFPEWLEVD 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P +D P + +LVVE YS+ Sbjct: 178 VKALKGTFKAKPQ--RD-ELPATINESLVVELYSK 209 >gi|218899810|ref|YP_002448221.1| ribosomal protein S4 [Bacillus cereus G9842] gi|228903174|ref|ZP_04067308.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 4222] gi|228967755|ref|ZP_04128771.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar sotto str. T04001] gi|229163648|ref|ZP_04291596.1| 30S ribosomal protein S4 [Bacillus cereus R309803] gi|226697801|sp|B7IKS0|RS4_BACC2 RecName: Full=30S ribosomal protein S4 gi|218544223|gb|ACK96617.1| ribosomal protein S4 [Bacillus cereus G9842] gi|228619785|gb|EEK76663.1| 30S ribosomal protein S4 [Bacillus cereus R309803] gi|228791909|gb|EEM39495.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856456|gb|EEN00982.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 4222] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPNQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 R---HAERAELPAEINEALIVEFYSR 200 >gi|161523454|ref|YP_001578466.1| 30S ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|189351773|ref|YP_001947401.1| 30S ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|221201590|ref|ZP_03574628.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2M] gi|221207335|ref|ZP_03580345.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2] gi|221213473|ref|ZP_03586448.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD1] gi|226697816|sp|A9ADL8|RS4_BURM1 RecName: Full=30S ribosomal protein S4 gi|160340883|gb|ABX13969.1| ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|189335795|dbj|BAG44865.1| small subunit ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|221166925|gb|EED99396.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD1] gi|221172923|gb|EEE05360.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2] gi|221178406|gb|EEE10815.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2M] Length = 207 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIGGDI--NESLIVELYSR 207 >gi|146298136|ref|YP_001192727.1| 30S ribosomal protein S4 [Flavobacterium johnsoniae UW101] gi|189045380|sp|A5FN16|RS4_FLAJO RecName: Full=30S ribosomal protein S4 gi|146152554|gb|ABQ03408.1| 30S ribosomal protein S4 [Flavobacterium johnsoniae UW101] Length = 201 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG +++ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGMAKKRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F++A ++G T L+ E+RLD +V+R P+ ARQ V+HR Sbjct: 60 YSYG-ILEKQFRNLFEKASATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRGARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD + V++KSK L ++ E S V E+I+ N+D TF Sbjct: 119 HITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAI-ERSLSNSSHVYEWITWNNDLKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ L+ P ++ L+VE Y++ Sbjct: 178 VSVPARLQ---IPENIKEQLIVELYNK 201 >gi|289706213|ref|ZP_06502576.1| ribosomal protein S4 [Micrococcus luteus SK58] gi|289557052|gb|EFD50380.1| ribosomal protein S4 [Micrococcus luteus SK58] Length = 208 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 10/210 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + R + +H R +G L + + + R YGPG HG+ R+ + S + ++L+ KQ+++ Sbjct: 5 LRTRRTVRH--SRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRLRA 62 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +I E + R F+EA R+ G T NL+ LE RLD +V RA F TI ARQ V HRH Sbjct: 63 QY-NIREAQMRRYFEEAKRTAGLTGENLVELLEQRLDALVLRAGFARTIQQARQLVVHRH 121 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMV 176 +LV+G+ V+I S+R KEG +I V ++S+++ A+ A + V P Y++V D + Sbjct: 122 ILVDGKRVDIPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIDKLR 181 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT R P K PV + LVVE+Y+R Sbjct: 182 ATLTRRP---KRSEVPVTCEEQLVVEYYAR 208 >gi|325529703|gb|EGD06566.1| 30S ribosomal protein S4 [Burkholderia sp. TJI49] Length = 207 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|50086191|ref|YP_047701.1| 30S ribosomal protein S4 [Acinetobacter sp. ADP1] gi|61215531|sp|Q6F7T6|RS4_ACIAD RecName: Full=30S ribosomal protein S4 gi|49532167|emb|CAG69879.1| 30S ribosomal protein S4 [Acinetobacter sp. ADP1] Length = 207 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 123/212 (58%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQAR-GKQSEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 60 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 119 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMDVDHSK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 179 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 207 >gi|183600728|ref|ZP_02962221.1| hypothetical protein PROSTU_04324 [Providencia stuartii ATCC 25827] gi|212709003|ref|ZP_03317131.1| hypothetical protein PROVALCAL_00035 [Providencia alcalifaciens DSM 30120] gi|268593565|ref|ZP_06127786.1| ribosomal protein S4 [Providencia rettgeri DSM 1131] gi|188019708|gb|EDU57748.1| hypothetical protein PROSTU_04324 [Providencia stuartii ATCC 25827] gi|212688369|gb|EEB47897.1| hypothetical protein PROVALCAL_00035 [Providencia alcalifaciens DSM 30120] gi|291310842|gb|EFE51295.1| ribosomal protein S4 [Providencia rettgeri DSM 1131] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DVI V++K+K+ + + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|262377288|ref|ZP_06070512.1| ribosomal protein S4 [Acinetobacter lwoffii SH145] gi|262307741|gb|EEY88880.1| ribosomal protein S4 [Acinetobacter lwoffii SH145] Length = 208 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 122/212 (57%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ + PG HG R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKVPGQHGGARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +LA +R +P ++ ++H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELATQRGMPSWMEIDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P D+P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR-SDLPAEI--NESLIVELYSK 208 >gi|88861470|ref|ZP_01136096.1| 30S ribosomal protein S4 [Pseudoalteromonas tunicata D2] gi|88816518|gb|EAR26347.1| 30S ribosomal protein S4 [Pseudoalteromonas tunicata D2] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARIKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ V+VNG VNI SYR DV+ +++K+K+ A ++ A +LAE R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGSVVNIPSYRITADDVVVIREKAKKQARIVAALELAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 SKMEGVFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|77165764|ref|YP_344289.1| ribosomal protein S4 [Nitrosococcus oceani ATCC 19707] gi|254433943|ref|ZP_05047451.1| ribosomal protein S4 [Nitrosococcus oceani AFC27] gi|90101699|sp|Q3J8T7|RS4_NITOC RecName: Full=30S ribosomal protein S4 gi|76884078|gb|ABA58759.1| SSU ribosomal protein S4P [Nitrosococcus oceani ATCC 19707] gi|207090276|gb|EDZ67547.1| ribosomal protein S4 [Nitrosococcus oceani AFC27] Length = 208 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 127/212 (59%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQ-RRKSKPSYFGLQLRAK 55 M+K K K RR G +L+ + P++++ PG HG R+++ S + LQLR K Sbjct: 1 MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGARRARMSDYALQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKLRRMYG-VLERQFRRYYKEAARRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDN 174 +NH+ VLVNG+ +NI SY+ + DV+ V++K+K+ + A +LA+ R E+I +N Sbjct: 120 INHKGVLVNGQGINIPSYQVRAEDVVAVREKAKRQDRIKFALELAQARAEAEWIEINAGK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P + P +Q NLVVE YS+ Sbjct: 180 LEGVFKRVPERSELAP---DIQENLVVELYSK 208 >gi|134294468|ref|YP_001118203.1| 30S ribosomal protein S4 [Burkholderia vietnamiensis G4] gi|134137625|gb|ABO53368.1| SSU ribosomal protein S4P [Burkholderia vietnamiensis G4] Length = 213 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 125/207 (60%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 14 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 70 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 71 IYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKS 129 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ TF Sbjct: 130 ITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAKKFEGTF 189 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P D+ + +L+VE YSR Sbjct: 190 KQMPER-ADIAGDI--NESLIVELYSR 213 >gi|294786846|ref|ZP_06752100.1| ribosomal protein S4 [Parascardovia denticolens F0305] gi|315226482|ref|ZP_07868270.1| 30S ribosomal protein S4 [Parascardovia denticolens DSM 10105] gi|294485679|gb|EFG33313.1| ribosomal protein S4 [Parascardovia denticolens F0305] gi|315120614|gb|EFT83746.1| 30S ribosomal protein S4 [Parascardovia denticolens DSM 10105] Length = 208 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 125/208 (60%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + +S R YGPG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRARRQVRLSRALGIALTPKAQSLFEKRPYGPGEHGRDRRRAESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G +SEK+ RS+++ A R+ G T ++ LE+RLD +V R+ F T ARQFV HRH+L Sbjct: 65 G-VSEKQLRSVYERATRASGQTGTSMQVQLETRLDALVLRSGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKPKSQTMEPFQAAAEGVHRDVLPAVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++++P V +Q VVE+Y+R Sbjct: 184 LTRLP-EVEEIPVQVNIQ--YVVEYYAR 208 >gi|288818043|ref|YP_003432390.1| ribosomal protein S4 [Hydrogenobacter thermophilus TK-6] gi|288787442|dbj|BAI69189.1| ribosomal protein S4 [Hydrogenobacter thermophilus TK-6] gi|308751644|gb|ADO45127.1| ribosomal protein S4 [Hydrogenobacter thermophilus TK-6] Length = 209 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 123/211 (58%), Gaps = 8/211 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQ 56 MS+ K+DRR G L R + ++ R++ PG HG + RK K + FGL+L KQ Sbjct: 1 MSRYIGPWSKVDRRFGAVLSNRKSAGKVLSRRNFPPGQHGRVKGRKRKLTEFGLRLMEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG + EK+FR F+EA +++G+T L+ LE RLD +VYR T ARQ + Sbjct: 61 KLKFLYGGLREKQFRRYFEEASKAKGNTGQVLLQLLERRLDNVVYRLGMAVTRRQARQMI 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNM 175 H H+LVNG+ V+I SYR + GD+IE+K S+ + +E Q + R +P ++ ++ +N Sbjct: 121 AHGHILVNGKKVDIPSYRVQVGDIIELKPASRDVPQFIENIQSIDPRSIPPWLELDKENF 180 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P K+V V + V+EFYSR Sbjct: 181 RGKVIDLP---KEVELEVPVNVQYVIEFYSR 208 >gi|29839780|ref|NP_828886.1| 30S ribosomal protein S4 [Chlamydophila caviae GPIC] gi|33301548|sp|Q824X7|RS4_CHLCV RecName: Full=30S ribosomal protein S4 gi|29834127|gb|AAP04764.1| ribosomal protein S4 [Chlamydophila caviae GPIC] Length = 209 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 121/209 (57%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRSRNPLLKKPHPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ FKE +G + + E RLD +VYR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAFKEVINKQGSVTKMFLERFECRLDNMVYRMGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G + +K+KS++L SV E+ L RD +P YISV+ N Sbjct: 120 VLVNGKKVDRRSFFLRPGMQVSLKEKSRKLQSVQES--LENRDEGSLPSYISVDKGNFKG 177 Query: 178 TFVRIPSSLK-DVPYPVIMQPNLVVEFYS 205 + P + + P+ + ++V EF S Sbjct: 178 ELLVSPEQDQIEAQLPLPVDVSVVCEFLS 206 >gi|327439214|dbj|BAK15579.1| ribosomal protein S4 [Solibacillus silvestris StLB046] Length = 200 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IAKRPYAPGQHGPNSRGKKSEYGLQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ + A + +G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFKNTYLRAGKLQGVHGENFMILLETRLDNLVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY K G I +++KS L+ V E+ ++ VPEY+S + D+ V TFV Sbjct: 119 ILVDGNRVDIPSYSVKPGQTISLREKSANLSVVAESIEV-NSFVPEYLSFDADSKVGTFV 177 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L + +VEFYSR Sbjct: 178 RLPERSELSSE-----INEQFIVEFYSR 200 >gi|261342766|ref|ZP_05970624.1| ribosomal protein S4 [Enterobacter cancerogenus ATCC 35316] gi|288314945|gb|EFC53883.1| ribosomal protein S4 [Enterobacter cancerogenus ATCC 35316] Length = 206 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRQPER-SDLSADI--NEHLIVELYSK 206 >gi|300690185|ref|YP_003751180.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum PSI07] gi|299077245|emb|CBJ49871.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum PSI07] Length = 207 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T +L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGESLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQVKAGDVVAIREKSKKQVRIAESLSLAEQTGFPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDR-ADIAGDI--NESLIVELYSR 207 >gi|152998247|ref|YP_001343082.1| 30S ribosomal protein S4 [Marinomonas sp. MWYL1] gi|189045385|sp|A6W368|RS4_MARMS RecName: Full=30S ribosomal protein S4 gi|150839171|gb|ABR73147.1| ribosomal protein S4 [Marinomonas sp. MWYL1] Length = 206 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 110/174 (63%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+HG RR + S +GLQLR KQK+++ YG I EK+FR+ +K A R +G T NL+ LE Sbjct: 38 PGVHGARR-GRLSEYGLQLREKQKVRRMYG-ILEKQFRNYYKSAARLKGATGENLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYRA F T ARQ V H+ +LVNG +VNI SY+ K GDV+ +++K+K+ V Sbjct: 96 SRLDNVVYRAGFGSTRAEARQLVGHKGILVNGATVNIPSYQVKAGDVVSIREKAKKQLRV 155 Query: 154 LEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +L++ P +I V+ + AT+ +P + + NL+VE YS+ Sbjct: 156 QSALELSKGRAPIHWIEVDSTKLEATYKALP---ERADLSAEINENLIVELYSK 206 >gi|323488432|ref|ZP_08093679.1| 30S ribosomal protein S4 [Planococcus donghaensis MPA1U2] gi|323397939|gb|EGA90738.1| 30S ribosomal protein S4 [Planococcus donghaensis MPA1U2] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLTGTGKE-LEKRPYAPGQHGANQRRKVSEYGLQLQEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F+++F +A + G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFKTLFNKAGKMPGKHGENFMILLEARLDNVVYRLGLARTRRQARQIVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I S+ K G I ++KS L V EA ++ VPEY++++ D+ TFV Sbjct: 119 ILVDGKRVDIPSFSVKPGQTIAFREKSSNLDVVNEAIEV-NNFVPEYVTIDTDSKTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RLPERSE---LSAEINEQLIVEYYSR 200 >gi|39997924|ref|NP_953875.1| 30S ribosomal protein S4 [Geobacter sulfurreducens PCA] gi|61215647|sp|Q749B2|RS4_GEOSL RecName: Full=30S ribosomal protein S4 gi|39984869|gb|AAR36225.1| ribosomal protein S4 [Geobacter sulfurreducens PCA] gi|307635098|gb|ADI85585.2| ribosomal protein S4 [Geobacter sulfurreducens KN400] Length = 208 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R K S +G+QLR KQK+++ YG I EK+FRS F+EADR +G Sbjct: 30 KCAIKRRNYPPGQHGQGR-PKVSNYGVQLREKQKVRRIYG-ILEKQFRSYFQEADRLKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+S LE RLD +VYR F + AR V H H +NG+ NI S + + GDV+E+ Sbjct: 88 TGENLLSLLERRLDNVVYRLGFAASRTEARILVRHNHFTLNGKKANIPSIQLRAGDVVEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+KS+++A + E+ + R +P+++ + D +P +D+ P+ Q L+VE Sbjct: 148 KEKSRKIACINESLDAVVRRGIPQWLELEKDAYKGVVKTLPVR-EDITMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|239618238|ref|YP_002941560.1| ribosomal protein S4 [Kosmotoga olearia TBF 19.5.1] gi|259495284|sp|C5CGH5|RS4_KOSOT RecName: Full=30S ribosomal protein S4 gi|239507069|gb|ACR80556.1| ribosomal protein S4 [Kosmotoga olearia TBF 19.5.1] Length = 208 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 12/204 (5%) Query: 10 KIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR G L+ + PK V R + PG HG + K + +G+QLR+KQ +K+ YG Sbjct: 10 KLCRREGFKLYLKGERCFTPKCAVVKRPFAPGQHGSATR-KLTQYGMQLRSKQALKRMYG 68 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR F+ A R +T LI LESRLD +VYR F + ARQ V+H HVLV Sbjct: 69 -VLEKQFRRYFEIASRKSEETGTALIKVLESRLDNVVYRMGFASSRKQARQLVSHGHVLV 127 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRI 182 NGR VN SY + GD+IE+K+KSK V EA + + R P ++ ++ D TFVR Sbjct: 128 NGRKVNKASYSVRPGDIIEIKEKSKAKVPVKEAIEASRNRTTPPWLEIDFDAARGTFVRF 187 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P ++V PV +Q ++E YS+ Sbjct: 188 PER-EEVDIPVDLQS--IIELYSK 208 >gi|304404108|ref|ZP_07385770.1| ribosomal protein S4 [Paenibacillus curdlanolyticus YK9] gi|304347086|gb|EFM12918.1| ribosomal protein S4 [Paenibacillus curdlanolyticus YK9] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K K+ RR+G +L G K + R + PG HG + K S +G+QL+ KQK++ Sbjct: 1 MSRYTGPKFKLSRRLGISLSGTGKE-LAKRPFPPGQHGANLRKKISGYGVQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR++F A + +G + N + LESRLD +VYR F + ARQ V+H H Sbjct: 60 MYG-LNEKQFRNLFDRASKQKGISGENFMFLLESRLDNLVYRLGFANSRAGARQLVSHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY GDVI ++++S+ + S+ EA + + VP Y+ +N + F+ Sbjct: 119 VTVNGKKVDIASYTVALGDVIGLRERSRSMKSIKEARE-SRSHVPNYLDLNEAALEGKFL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLP---ERAELSQDIDEKQIVEFYSR 200 >gi|71905986|ref|YP_283573.1| 30S ribosomal protein S4 [Dechloromonas aromatica RCB] gi|90101686|sp|Q47J78|RS4_DECAR RecName: Full=30S ribosomal protein S4 gi|71845607|gb|AAZ45103.1| SSU ribosomal protein S4P [Dechloromonas aromatica RCB] Length = 209 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 123/215 (57%), Gaps = 15/215 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + RSY PG HGQ+ ++ S +G+ LRA Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRSYAPGQHGQKSGARLSDYGVHLRA 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR F EADR +G T NL+ LE+RLD++ YR F + +RQ Sbjct: 61 KQKIRRVYG-VLEGQFRKTFAEADRRKGQTGENLLQLLEARLDSVAYRMGFGASRSESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H +LVNG+ VNI S+ K GDV+++ +++ + + LEA++ R PE+ISV+ Sbjct: 120 VVRHNGILVNGKRVNIPSFIVKPGDVVQLTDRARASLRCKAALEAAE--SRGFPEWISVD 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + P + LV+E YS+ Sbjct: 178 VKEGKGTFKAMP---QRSELPATLNEGLVIELYSK 209 >gi|84394604|ref|ZP_00993306.1| 30S ribosomal protein S4 [Vibrio splendidus 12B01] gi|84374778|gb|EAP91723.1| 30S ribosomal protein S4 [Vibrio splendidus 12B01] Length = 206 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ VLVNG+ VN+ S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKSVLVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDASKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADI--NEHLIVELYSK 206 >gi|154687087|ref|YP_001422248.1| 30S ribosomal protein S4 [Bacillus amyloliquefaciens FZB42] gi|308174649|ref|YP_003921354.1| 30S ribosomal protein S4 (BS4) [Bacillus amyloliquefaciens DSM 7] gi|171855002|sp|A7Z7P1|RS4_BACA2 RecName: Full=30S ribosomal protein S4 gi|154352938|gb|ABS75017.1| RpsD [Bacillus amyloliquefaciens FZB42] gi|307607513|emb|CBI43884.1| ribosomal protein S4 (BS4) [Bacillus amyloliquefaciens DSM 7] gi|328554576|gb|AEB25068.1| 30S ribosomal protein S4 [Bacillus amyloliquefaciens TA208] gi|328912981|gb|AEB64577.1| 30S ribosomal protein S4 [Bacillus amyloliquefaciens LL3] Length = 200 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L++RLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAAKMTGKHGENFMILLDARLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY+ K G I V++KS+ L S+++ S VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYQVKPGQTIGVREKSRNL-SIIKESVEVNNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---INEALIVEFYSR 200 >gi|78221872|ref|YP_383619.1| 30S ribosomal protein S4 [Geobacter metallireducens GS-15] gi|90101690|sp|Q39XY0|RS4_GEOMG RecName: Full=30S ribosomal protein S4 gi|78193127|gb|ABB30894.1| SSU ribosomal protein S4P [Geobacter metallireducens GS-15] Length = 208 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R K S +G+QLR KQK+++ YG + EK+FRS F+EADR RG Sbjct: 30 KCAIKRRNYPPGQHGQGR-PKVSNYGIQLREKQKVRRIYG-VLEKQFRSYFEEADRMRGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+S LE RLD +VYR F + AR V H H +NGR NI S + K GDV+ + Sbjct: 88 TGENLLSLLERRLDNVVYRLGFASSRTEARILVRHNHFTLNGRKANIPSIQLKAGDVVVL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+KS+++A + E+ + R P+++ ++ + +P+ +D+ P+ Q L+VE Sbjct: 148 KEKSRKIACINESLDAVVRRGTPQWLELDKEGYKGVVKLLPAR-EDIAMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|15642567|ref|NP_232200.1| 30S ribosomal protein S4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147675276|ref|YP_001218066.1| 30S ribosomal protein S4 [Vibrio cholerae O395] gi|153820465|ref|ZP_01973132.1| ribosomal protein S4 [Vibrio cholerae NCTC 8457] gi|227082689|ref|YP_002811240.1| ribosomal protein S4 [Vibrio cholerae M66-2] gi|229507376|ref|ZP_04396881.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae BX 330286] gi|229509700|ref|ZP_04399181.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae B33] gi|229513495|ref|ZP_04402959.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TMA 21] gi|229516825|ref|ZP_04406271.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae RC9] gi|229521638|ref|ZP_04411056.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TM 11079-80] gi|229527498|ref|ZP_04416890.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 12129(1)] gi|229606882|ref|YP_002877530.1| 30S ribosomal protein S4 [Vibrio cholerae MJ-1236] gi|254292241|ref|ZP_04963004.1| ribosomal protein S4 [Vibrio cholerae AM-19226] gi|254851112|ref|ZP_05240462.1| ribosomal protein S4 [Vibrio cholerae MO10] gi|255744459|ref|ZP_05418411.1| SSU ribosomal protein S4p (S9e) [Vibrio cholera CIRS 101] gi|297581414|ref|ZP_06943337.1| ribosomal protein S4 [Vibrio cholerae RC385] gi|26399513|sp|Q9KP07|RS4_VIBCH RecName: Full=30S ribosomal protein S4 gi|172047566|sp|A5F573|RS4_VIBC3 RecName: Full=30S ribosomal protein S4 gi|254764621|sp|C3LRN4|RS4_VIBCM RecName: Full=30S ribosomal protein S4 gi|9657158|gb|AAF95713.1| ribosomal protein S4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126508992|gb|EAZ71586.1| ribosomal protein S4 [Vibrio cholerae NCTC 8457] gi|146317159|gb|ABQ21698.1| ribosomal protein S4 [Vibrio cholerae O395] gi|150421843|gb|EDN13827.1| ribosomal protein S4 [Vibrio cholerae AM-19226] gi|227010577|gb|ACP06789.1| ribosomal protein S4 [Vibrio cholerae M66-2] gi|227014461|gb|ACP10671.1| ribosomal protein S4 [Vibrio cholerae O395] gi|229335130|gb|EEO00615.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 12129(1)] gi|229341232|gb|EEO06236.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TM 11079-80] gi|229345888|gb|EEO10860.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae RC9] gi|229349372|gb|EEO14328.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TMA 21] gi|229353174|gb|EEO18113.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae B33] gi|229354881|gb|EEO19802.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae BX 330286] gi|229369537|gb|ACQ59960.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae MJ-1236] gi|254846817|gb|EET25231.1| ribosomal protein S4 [Vibrio cholerae MO10] gi|255737984|gb|EET93377.1| SSU ribosomal protein S4p (S9e) [Vibrio cholera CIRS 101] gi|297534252|gb|EFH73090.1| ribosomal protein S4 [Vibrio cholerae RC385] gi|327485054|gb|AEA79461.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae LMA3894-4] Length = 206 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++AE R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADINEQ--LIVELYSK 206 >gi|167036828|ref|YP_001664406.1| 30S ribosomal protein S4 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039547|ref|YP_001662532.1| 30S ribosomal protein S4 [Thermoanaerobacter sp. X514] gi|256752659|ref|ZP_05493511.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus CCSD1] gi|300915202|ref|ZP_07132517.1| ribosomal protein S4 [Thermoanaerobacter sp. X561] gi|307725126|ref|YP_003904877.1| 30S ribosomal protein S4 [Thermoanaerobacter sp. X513] gi|320115250|ref|YP_004185409.1| 30S ribosomal protein S4 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226695091|sp|B0KCM7|RS4_THEP3 RecName: Full=30S ribosomal protein S4 gi|226695092|sp|B0K5S0|RS4_THEPX RecName: Full=30S ribosomal protein S4 gi|166853787|gb|ABY92196.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514] gi|166855662|gb|ABY94070.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748479|gb|EEU61531.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus CCSD1] gi|300888926|gb|EFK84073.1| ribosomal protein S4 [Thermoanaerobacter sp. X561] gi|307582187|gb|ADN55586.1| ribosomal protein S4 [Thermoanaerobacter sp. X513] gi|319928341|gb|ADV79026.1| ribosomal protein S4 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 206 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 12/186 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P R Y PG HGQ +K K + +G+QLR KQK+K+YYG + E++F +++EA+R +G Sbjct: 30 KCPFARRGYAPGQHGQEKK-KLTNYGMQLREKQKLKRYYG-VLERQFERLYEEAERMKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +V+R F + ARQ V+H H+ VNG+ V+I S+ K GDVI V Sbjct: 88 TGENLLQLLERRLDNVVFRLGFAASRPQARQLVSHGHIEVNGKKVDIPSFLVKPGDVISV 147 Query: 144 KQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++KS+ + + LE S R+VP+++ +N D V +P + + P+ Q +L+ Sbjct: 148 REKSRSMELIKNNLEVS----RNVPDWLELNKDAFEGRVVSLPRR-EHIDLPI--QEHLI 200 Query: 201 VEFYSR 206 VE YS+ Sbjct: 201 VELYSK 206 >gi|294055197|ref|YP_003548855.1| ribosomal protein S4 [Coraliomargarita akajimensis DSM 45221] gi|293614530|gb|ADE54685.1| ribosomal protein S4 [Coraliomargarita akajimensis DSM 45221] Length = 202 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 129/209 (61%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I+RR G+ ++ P + + PG HG R + K S + + L KQK++ Sbjct: 1 MARYTGPTTRINRRFGQAIFA-PTKAFERKPHPPGQHGPRLRRKLSDYAIGLNEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR F++A RG T + LE RLD++VYR F + AARQFV+H H Sbjct: 60 MYG-MTEKQFRLTFEKAKNQRGVTGEIFLQMLECRLDSVVYRLGFAKSRSAARQFVSHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLAS-VLEASQLAERDVPEYISVNHDNMVA 177 V VNG+ +I S+ KEGD IEV+++ S+QLA+ +E S R VPE++++N D++ A Sbjct: 119 VCVNGKKTDIASFMVKEGDEIEVRERTSSRQLATRGMEES--TARTVPEWVTLNSDSLKA 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R+PS+ ++ + +Q L+VE+YSR Sbjct: 177 TVNRLPSN-EETEAGINVQ--LIVEYYSR 202 >gi|189219451|ref|YP_001940092.1| Ribosomal protein S4 [Methylacidiphilum infernorum V4] gi|189186309|gb|ACD83494.1| Ribosomal protein S4 [Methylacidiphilum infernorum V4] Length = 228 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 124/209 (59%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K KI RR L+G P + + Y PG+HGQR K S + + L KQK++ Sbjct: 27 MAKYIGPKTKISRRFNVALFG-PNKALERKPYPPGIHGQRAGKKKSDYAIALGEKQKLRF 85 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++F F A + +G T L+ LE RLD +VYR F + ARQ VNH H Sbjct: 86 MYG-ITERQFSRYFNIAHKKKGVTGEVLLQILEERLDNVVYRLCFATSRMEARQLVNHGH 144 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 + VNG+ VNI SYR K GDVIEV K +S++LA LEA + + +P+++++ DN+ Sbjct: 145 IYVNGKKVNIPSYRTKPGDVIEVCPKPQSRKLALRNLEAMKGVK--IPDWLALEPDNLKG 202 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ +D P++ + LVVEFYS+ Sbjct: 203 VVKRVPT--RDEIQPIVNE-QLVVEFYSK 228 >gi|126651345|ref|ZP_01723552.1| 30S ribosomal protein S4 [Bacillus sp. B14905] gi|169829591|ref|YP_001699749.1| 30S ribosomal protein S4 [Lysinibacillus sphaericus C3-41] gi|226699085|sp|B1HX43|RS4_LYSSC RecName: Full=30S ribosomal protein S4 gi|126591874|gb|EAZ85957.1| 30S ribosomal protein S4 [Bacillus sp. B14905] gi|168994079|gb|ACA41619.1| 30S ribosomal protein S4 [Lysinibacillus sphaericus C3-41] Length = 200 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IEKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + +G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFRTLFNRAGKMKGVHGENFMILLETRLDNLVYRLGLARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I S+ K G I +++KS+ LA V EA ++ VP+Y++ + D TF Sbjct: 119 ILVDGKRVDIPSFSVKPGQTISLREKSQNLAVVGEAIEV-NNFVPDYLTFDADKKEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + + +VE+YSR Sbjct: 178 RLPERSE---LSAEINESFIVEYYSR 200 >gi|220935468|ref|YP_002514367.1| 30S ribosomal protein S4 [Thioalkalivibrio sp. HL-EbGR7] gi|254764620|sp|B8GV34|RS4_THISH RecName: Full=30S ribosomal protein S4 gi|219996778|gb|ACL73380.1| 30S ribosomal protein S4 [Thioalkalivibrio sp. HL-EbGR7] Length = 206 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 128/212 (60%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ GR +S ++T+ PG HG RR ++ S +GLQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKGRGRS-LDTKCKLDKAPGQHGDRR-ARLSDYGLQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR+ +K A R +G T NL+ LE RLD +VYR F T ARQ Sbjct: 59 QKLRRIYG-VLERQFRNYYKTASRMKGSTGENLLQLLERRLDNVVYRMGFGATRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ + DV+ V++K+K+ + ++ LAE+ PE++ V+ Sbjct: 118 VSHKAIQVNGQAVNIASYQVQPSDVVAVREKAKKQVRIQDSLTLAEQFGFPEWVEVDTKK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F IP P + +LVVE YS+ Sbjct: 178 MEGVFKSIPER---SELPAEINESLVVELYSK 206 >gi|86149496|ref|ZP_01067727.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596172|ref|ZP_01099409.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 84-25] gi|218563183|ref|YP_002344963.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|26399526|sp|Q9PM81|RS4_CAMJE RecName: Full=30S ribosomal protein S4 gi|85840278|gb|EAQ57536.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191013|gb|EAQ94985.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 84-25] gi|112360890|emb|CAL35691.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926789|gb|ADC29141.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni IA3902] gi|315927660|gb|EFV06991.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929465|gb|EFV08662.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 305] Length = 208 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 89/213 (41%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG R K K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGAR-KGKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD IVYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNIVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLVNG+ V+I S+R + G IE+ +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVVIPV--EERFIVELYSK 208 >gi|207108317|ref|ZP_03242479.1| 30S ribosomal protein S4 [Helicobacter pylori HPKX_438_CA4C1] Length = 178 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 9/180 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + +++RR G +L + KS ++ R+YGPG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGAVERLERRFGVSLALKGERRLSGKSALDKRAYGPGQHGQRR-AKTSDYGLQLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF EA+R G+T NLI +E RLD +VYR F T +ARQ Sbjct: 60 KQKAKMMYG-ISEKQFRSIFVEANRLDGNTGENLIRLIERRLDNVVYRMGFATTRSSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ ++I SY + G IE+K+K+K V+ A +L A+ + +I V + Sbjct: 119 LVTHGHVLVDGKRLDIPSYFVRSGQKIEIKEKTKSNPQVVRAMELTAQTGIVPWIDVEKE 178 >gi|206890097|ref|YP_002249221.1| ribosomal protein S4 [Thermodesulfovibrio yellowstonii DSM 11347] gi|226695094|sp|B5YG23|RS4_THEYD RecName: Full=30S ribosomal protein S4 gi|206742035|gb|ACI21092.1| ribosomal protein S4 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 208 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 111/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R Y PG HG R K S +GLQLR KQK+K+ YG + E++F++ F++A + +G Sbjct: 30 KCAFERRKYPPGQHGHNR-GKLSDYGLQLREKQKVKRIYG-VMERQFKNYFEKATKMKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD ++YR F ARQ V H + VNG+ V+I SY + GD+IE+ Sbjct: 88 TGENLLKLLERRLDNVIYRMGFAMNRRQARQLVRHGYFTVNGKKVDIPSYLVRPGDIIEI 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 Q K+L + E+ LAE R P ++ VN + M FVR+P +++ PV Q L+VE Sbjct: 148 VQSGKELEIIKESLALAEQRGFPVWLEVNAEEMKGKFVRLPER-EEMQLPV--QEQLIVE 204 Query: 203 FYSR 206 FYS+ Sbjct: 205 FYSK 208 >gi|57242510|ref|ZP_00370448.1| ribosomal protein S4 [Campylobacter upsaliensis RM3195] gi|315639080|ref|ZP_07894248.1| 30S ribosomal protein S4 [Campylobacter upsaliensis JV21] gi|57016795|gb|EAL53578.1| ribosomal protein S4 [Campylobacter upsaliensis RM3195] gi|315480856|gb|EFU71492.1| 30S ribosomal protein S4 [Campylobacter upsaliensis JV21] Length = 208 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG RR K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGARR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARKEGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNGR V+I S+R + G IEV +KSK + A L A+ + ++ V D Sbjct: 119 LVTHGHILVNGRRVDIPSFRVEAGAKIEVAEKSKNNPQISRAIDLTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRYGIFTRKPER-EEVVIPV--EERFIVELYSK 208 >gi|296105004|ref|YP_003615150.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059463|gb|ADF64201.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 202 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 127/204 (62%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +RQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVSHKAIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ K DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 122 NGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRQ 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 182 PER-SDLSADI--NEHLIVELYSK 202 >gi|27364191|ref|NP_759719.1| 30S ribosomal protein S4 [Vibrio vulnificus CMCP6] gi|37678582|ref|NP_933191.1| 30S ribosomal protein S4 [Vibrio vulnificus YJ016] gi|320157577|ref|YP_004189956.1| 30S ribosomal protein S4p (S9e) [Vibrio vulnificus MO6-24/O] gi|31340392|sp|Q8DE62|RS4_VIBVU RecName: Full=30S ribosomal protein S4 gi|41017818|sp|Q7MPG5|RS4_VIBVY RecName: Full=30S ribosomal protein S4 gi|27360309|gb|AAO09246.1| ribosomal protein S4 [Vibrio vulnificus CMCP6] gi|37197322|dbj|BAC93162.1| ribosomal protein S4 [Vibrio vulnificus YJ016] gi|319932889|gb|ADV87753.1| SSU ribosomal protein S4p (S9e) [Vibrio vulnificus MO6-24/O] Length = 206 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ + EA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYAEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQTRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADINEQ--LIVELYSK 206 >gi|172059366|ref|YP_001807018.1| 30S ribosomal protein S4 [Burkholderia ambifaria MC40-6] gi|226697813|sp|B1YRQ4|RS4_BURA4 RecName: Full=30S ribosomal protein S4 gi|171991883|gb|ACB62802.1| ribosomal protein S4 [Burkholderia ambifaria MC40-6] Length = 207 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQMPER-ADIAGDI--NESLIVELYSR 207 >gi|16080018|ref|NP_390844.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. 168] gi|221315235|ref|ZP_03597040.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320153|ref|ZP_03601447.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324434|ref|ZP_03605728.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312503|ref|YP_004204790.1| 30S ribosomal protein S4 [Bacillus subtilis BSn5] gi|133949|sp|P21466|RS4_BACSU RecName: Full=30S ribosomal protein S4; Short=BS4 gi|143467|gb|AAA22717.1| ribosomal protein S4 [Bacillus subtilis] gi|2293319|gb|AAC00397.1| ribosomal protein S4 [Bacillus subtilis] gi|2635450|emb|CAB14944.1| ribosomal protein S4 (BS4) [Bacillus subtilis subsp. subtilis str. 168] gi|291485397|dbj|BAI86472.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. natto BEST195] gi|320018777|gb|ADV93763.1| 30S ribosomal protein S4 [Bacillus subtilis BSn5] Length = 200 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L+SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY K G I V++KS+ L S+++ S VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYLVKPGQTIGVREKSRNL-SIIKESVEVNNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---INEALIVEFYSR 200 >gi|315178982|gb|ADT85896.1| 30S ribosomal protein S4 [Vibrio furnissii NCTC 11218] Length = 206 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ +++K+K+ + + A ++AE R+ P +I V+ +M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASSM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|187930339|ref|YP_001900826.1| 30S ribosomal protein S4 [Ralstonia pickettii 12J] gi|226699109|sp|B2UEJ4|RS4_RALPJ RecName: Full=30S ribosomal protein S4 gi|187727229|gb|ACD28394.1| ribosomal protein S4 [Ralstonia pickettii 12J] Length = 207 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQVKSGDVIAIREKSKKQVRIAESLTLAEQSGFPIWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P D+ + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDR-ADIAGDI--NESLIVELYSR 207 >gi|254253495|ref|ZP_04946813.1| Ribosomal protein S4 [Burkholderia dolosa AUO158] gi|124896104|gb|EAY69984.1| Ribosomal protein S4 [Burkholderia dolosa AUO158] Length = 207 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDVI +++K+K+ A ++E+ LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVIAIREKAKKQARIVESLSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|88704352|ref|ZP_01102066.1| 30S ribosomal protein S4 [Congregibacter litoralis KT71] gi|88701403|gb|EAQ98508.1| 30S ribosomal protein S4 [Congregibacter litoralis KT71] Length = 206 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/212 (40%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S S PG HG RR + S +G+QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRSLESKCKPESV-PGQHGARR-GRLSDYGVQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 59 QKVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRIGFGSTRSEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V H+ +LVNG+ VNI SY+ K GDV+ +++K+K+ V A L A+R PE+I VN + Sbjct: 118 VAHKAILVNGKVVNIASYKVKAGDVVSLREKAKKQLRVQSAMALAAQRGEPEWIDVNVEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A + P + + NL+VE YS+ Sbjct: 178 LEAVYKAAPDRQELTSE---INENLIVELYSK 206 >gi|258625764|ref|ZP_05720643.1| 30S ribosomal protein S4 [Vibrio mimicus VM603] gi|261211127|ref|ZP_05925416.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC341] gi|262170491|ref|ZP_06038169.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus MB-451] gi|262401859|ref|ZP_06078424.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC586] gi|258582002|gb|EEW06872.1| 30S ribosomal protein S4 [Vibrio mimicus VM603] gi|260839628|gb|EEX66239.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC341] gi|261891567|gb|EEY37553.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus MB-451] gi|262351831|gb|EEZ00962.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC586] Length = 206 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ +++K+K+ + + A ++AE R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|241889823|ref|ZP_04777121.1| ribosomal protein S4 [Gemella haemolysans ATCC 10379] gi|241863445|gb|EER67829.1| ribosomal protein S4 [Gemella haemolysans ATCC 10379] Length = 200 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGENFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SY K G V+ V++KS+ L V EA ++ VPEY++ + D + + V Sbjct: 119 VLVDGKKVDIASYAVKPGQVVSVREKSRNLEIVKEAVEITNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + +P I + L+VE+YSR Sbjct: 178 RLPE--RSELHPEINE-QLIVEYYSR 200 >gi|82701924|ref|YP_411490.1| 30S ribosomal protein S4 [Nitrosospira multiformis ATCC 25196] gi|90101698|sp|Q2YAX3|RS4_NITMU RecName: Full=30S ribosomal protein S4 gi|82409989|gb|ABB74098.1| SSU ribosomal protein S4P [Nitrosospira multiformis ATCC 25196] Length = 208 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQ+ + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRNYAPGQHGQK-SGRLSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR+ ++ A+R RG T NL+ LE RLDT+ YR F + ARQ Sbjct: 60 KQKLRRIYG-VLERQFRNGYELAERQRGVTGENLLQLLECRLDTVSYRMGFGASRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H +LVNGR +NI SY+ K GDVIEV +K+K + + + AE R PE++ V+ Sbjct: 119 IVRHNGILVNGRRINIPSYQVKPGDVIEVAEKAKNHLRIKASVEAAEQRHFPEWLEVDTK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF P D+P + +LV+E YS+ Sbjct: 179 AMKGTFKNKPER-SDLPSSI--NESLVIELYSK 208 >gi|300721390|ref|YP_003710661.1| 30S ribosomal subunit protein S4 [Xenorhabdus nematophila ATCC 19061] gi|297627878|emb|CBJ88424.1| 30S ribosomal subunit protein S4 [Xenorhabdus nematophila ATCC 19061] Length = 206 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LESRLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLNLLESRLDNVVYRMGFGATRAESRQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ + VNGR VNI SY+ DV+ V++K+K+ A + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAITVNGRVVNIASYQVSPNDVVSVREKAKKQARIKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|323527577|ref|YP_004229730.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1001] gi|323384579|gb|ADX56670.1| ribosomal protein S4 [Burkholderia sp. CCGE1001] Length = 207 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 125/207 (60%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++VNG NI S + K GDV+ V+++SK+ A +LEA LAE+ +P ++SV+ TF Sbjct: 124 IMVNGVVSNIPSMQVKAGDVVAVREQSKKQARILEALSLAEQGGMPSWVSVDSKKFEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P ++ + +L+VE YSR Sbjct: 184 KQKPER-SEIAGDI--NESLIVELYSR 207 >gi|49483960|ref|YP_041184.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA252] gi|282904289|ref|ZP_06312177.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus C160] gi|282906114|ref|ZP_06313969.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909029|ref|ZP_06316847.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282919482|ref|ZP_06327217.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C427] gi|283958469|ref|ZP_06375920.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus A017934/97] gi|295428289|ref|ZP_06820918.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590748|ref|ZP_06949386.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MN8] gi|56749409|sp|Q6GFY8|RS4_STAAR RecName: Full=30S ribosomal protein S4 gi|49242089|emb|CAG40788.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA252] gi|282317292|gb|EFB47666.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C427] gi|282327293|gb|EFB57588.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331406|gb|EFB60920.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Btn1260] gi|282595907|gb|EFC00871.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus C160] gi|283790618|gb|EFC29435.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus A017934/97] gi|295127689|gb|EFG57326.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575634|gb|EFH94350.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MN8] gi|315195623|gb|EFU26010.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus CGS00] Length = 200 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPSQTISVREKSQKLNVIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|37528520|ref|NP_931865.1| 30S ribosomal protein S4 [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017820|sp|Q7MYH4|RS4_PHOLL RecName: Full=30S ribosomal protein S4 gi|36787958|emb|CAE17075.1| 30S ribosomal protein S4 [Photorhabdus luminescens subsp. laumondii TTO1] Length = 206 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+S LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVVYRMGFGATRAESRQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDAVKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---ADLSADINEHLIVELYSK 206 >gi|156932259|ref|YP_001436175.1| 30S ribosomal protein S4 [Cronobacter sakazakii ATCC BAA-894] gi|260599616|ref|YP_003212187.1| 30S ribosomal protein S4 [Cronobacter turicensis z3032] gi|171769807|sp|A7MPF7|RS4_ENTS8 RecName: Full=30S ribosomal protein S4 gi|156530513|gb|ABU75339.1| hypothetical protein ESA_00030 [Cronobacter sakazakii ATCC BAA-894] gi|260218793|emb|CBA34141.1| 30S ribosomal protein S4 [Cronobacter turicensis z3032] Length = 206 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ V++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P + +L+VE YS+ Sbjct: 179 EGTFKRKPER---TDLSADINEHLIVELYSK 206 >gi|221632952|ref|YP_002522175.1| 30S ribosomal protein S4 [Thermomicrobium roseum DSM 5159] gi|254764619|sp|B9KZW1|RS4_THERP RecName: Full=30S ribosomal protein S4 gi|221156886|gb|ACM06013.1| ribosomal protein S4 [Thermomicrobium roseum DSM 5159] Length = 217 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 89/200 (44%), Positives = 121/200 (60%), Gaps = 15/200 (7%) Query: 16 GENLWGRPKSPVNTR----SYGPGLHG--QRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 GE +G PK P+ R +Y PG HG QR +PS F LQLR KQK+K+ YG I E++ Sbjct: 23 GERCFG-PKCPIVKRHPNKNYPPGQHGPTQRAARRPSEFALQLREKQKLKRVYG-ILERQ 80 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 FR F EA+R G T NL+ LESRLD +VYR F + ARQ V H H LVNGR + Sbjct: 81 FRRHFDEAERRPGLTGDNLLQILESRLDNVVYRLGFADSRRQARQLVRHGHFLVNGRKTD 140 Query: 130 IGSYRCKEGDVIEVKQKS--KQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 I SY+ + GD+I V+ +S ++ VLE + + VP ++S + + M +R+P+ + Sbjct: 141 IPSYQVRPGDIIAVRPESRRREYFKVLEETA-KNKAVPAWLSRDLETMSGRVLRLPTRDE 199 Query: 188 -DVPYPVIMQPNLVVEFYSR 206 D+P PV Q LVVE+YSR Sbjct: 200 IDIP-PVNTQ--LVVEYYSR 216 >gi|116628655|ref|YP_821274.1| 30S ribosomal protein S4 [Streptococcus thermophilus LMD-9] gi|90101730|sp|Q5LXK5|RS4_STRT1 RecName: Full=30S ribosomal protein S4 gi|90101731|sp|Q5M255|RS4_STRT2 RecName: Full=30S ribosomal protein S4 gi|122266751|sp|Q03I94|RS4_STRTD RecName: Full=30S ribosomal protein S4 gi|116101932|gb|ABJ67078.1| SSU ribosomal protein S4P [Streptococcus thermophilus LMD-9] gi|312279309|gb|ADQ63966.1| 30S ribosomal protein S4 [Streptococcus thermophilus ND03] Length = 203 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGFSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LSEKQFRNLFVQATKVKGGTLGFNFMILLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-ATIGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|293602599|ref|ZP_06685042.1| 30S ribosomal protein S4 [Achromobacter piechaudii ATCC 43553] gi|292818971|gb|EFF78009.1| 30S ribosomal protein S4 [Achromobacter piechaudii ATCC 43553] Length = 207 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR KQK+K+ Sbjct: 8 KCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLREKQKLKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T ARQ V+HR Sbjct: 65 MYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVSHRA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +NG + +I S K GDV+ +++K+K+ + E+ LA +P+++ V+ + TF Sbjct: 124 IELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDATKLTGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P DV + ++VVE YSR Sbjct: 184 KSVPDR-ADVARDI--NESMVVELYSR 207 >gi|261346911|ref|ZP_05974555.1| ribosomal protein S4 [Providencia rustigianii DSM 4541] gi|282564977|gb|EFB70512.1| ribosomal protein S4 [Providencia rustigianii DSM 4541] Length = 206 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DVI V++K+K+ + + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + +L+VE YS+ Sbjct: 179 EGVFKRMPER---TDLSADINEHLIVELYSK 206 >gi|86148804|ref|ZP_01067071.1| 30S ribosomal protein S4 [Vibrio sp. MED222] gi|148982227|ref|ZP_01816653.1| 30S ribosomal protein S4 [Vibrionales bacterium SWAT-3] gi|218710725|ref|YP_002418346.1| 30S ribosomal protein S4 [Vibrio splendidus LGP32] gi|254764622|sp|B7VLD3|RS4_VIBSL RecName: Full=30S ribosomal protein S4 gi|85833394|gb|EAQ51585.1| 30S ribosomal protein S4 [Vibrio sp. MED222] gi|145960589|gb|EDK25942.1| 30S ribosomal protein S4 [Vibrionales bacterium SWAT-3] gi|218323744|emb|CAV20098.1| ribosomal protein S4 [Vibrio splendidus LGP32] Length = 206 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKSILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADI--NEHLIVELYSK 206 >gi|255038115|ref|YP_003088736.1| 30S ribosomal protein S4 [Dyadobacter fermentans DSM 18053] gi|254950871|gb|ACT95571.1| ribosomal protein S4 [Dyadobacter fermentans DSM 18053] Length = 201 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR GE + G P + ++Y PG+HG+ R+SK S + LQL KQK+K Sbjct: 1 MARYTGPKTKVARRYGEPIMG-PSKALAKKNYPPGMHGKGRRSKKSEYALQLAEKQKVKF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FRS+F++A G T NL+ + E+RLD VYR PT AARQ V+H+H Sbjct: 60 IYG-ILERQFRSLFEKASVKAGLTGENLLRYCEARLDNTVYRLGIAPTRRAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SY + G V+ V++KSK L +V ++ ++ N + F+ Sbjct: 119 ILVDGEIVNIPSYSLRPGQVVTVREKSKSLEAVTDSLAGHSSKGFSWLEWNGQELSGKFI 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P + +P + Q L+VE YS+ Sbjct: 179 SYPDR-ESIPENINEQ--LIVELYSK 201 >gi|146313361|ref|YP_001178435.1| 30S ribosomal protein S4 [Enterobacter sp. 638] gi|172046002|sp|A4WFA4|RS4_ENT38 RecName: Full=30S ribosomal protein S4 gi|145320237|gb|ABP62384.1| SSU ribosomal protein S4P [Enterobacter sp. 638] Length = 206 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRTYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVKANDVVCIREKAKKQSRVKAALELAEQREKPTWLEVDASKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRQPER-SDLSADI--NEHLIVELYSK 206 >gi|47565070|ref|ZP_00236113.1| ribosomal protein S4 [Bacillus cereus G9241] gi|47557856|gb|EAL16181.1| ribosomal protein S4 [Bacillus cereus G9241] Length = 200 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 R---HAERSELAAEINEALIVEFYSR 200 >gi|329893623|ref|ZP_08269757.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC3088] gi|328923550|gb|EGG30862.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC3088] Length = 206 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ R PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGARALESKCKLETAPGMHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I EK+FR +KEA R +G T NL+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-ILEKQFRGYYKEAARRKGATGENLLQLLESRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ VLVNG VN+ SY+ + GDV+ V++K+K+ + A LA +R E+I VN D + Sbjct: 119 SHKGVLVNGSVVNVPSYQVQPGDVVAVREKAKKQLRIQSAVALAGQRADIEWIDVNTDKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P + + NL+VE YS+ Sbjct: 179 EGVFKARPERAELTSE---INENLIVELYSK 206 >gi|170728985|ref|YP_001763011.1| 30S ribosomal protein S4 [Shewanella woodyi ATCC 51908] gi|226695076|sp|B1KM36|RS4_SHEWM RecName: Full=30S ribosomal protein S4 gi|169814332|gb|ACA88916.1| ribosomal protein S4 [Shewanella woodyi ATCC 51908] Length = 206 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 132/214 (61%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL++ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DVI +++KSK+ A ++ A ++ ++R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSANDVISIREKSKKQARIIAALEVSSQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 TKMEGAFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|33594506|ref|NP_882150.1| 30S ribosomal protein S4 [Bordetella pertussis Tohama I] gi|33594777|ref|NP_882420.1| 30S ribosomal protein S4 [Bordetella parapertussis 12822] gi|33599049|ref|NP_886609.1| 30S ribosomal protein S4 [Bordetella bronchiseptica RB50] gi|61236218|sp|P0A4C5|RS4_BORPE RecName: Full=30S ribosomal protein S4 gi|61236221|sp|P0A4C6|RS4_BORBR RecName: Full=30S ribosomal protein S4 gi|61236225|sp|P0A4C7|RS4_BORPA RecName: Full=30S ribosomal protein S4 gi|33564582|emb|CAE43898.1| 30S ribosomal protein S4 [Bordetella pertussis Tohama I] gi|33564853|emb|CAE39797.1| 30S ribosomal protein S4 [Bordetella parapertussis] gi|33575095|emb|CAE30558.1| 30S ribosomal protein S4 [Bordetella bronchiseptica RB50] Length = 207 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 120/207 (57%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR KQK+K+ Sbjct: 8 KCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLREKQKLKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T ARQ V+HR Sbjct: 65 MYG-VLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVSHRA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +NG + +I S K GDVI +++K+K+ + E+ LA +P+++ V+ M TF Sbjct: 124 IELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDASKMTGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P DV V ++VVE YSR Sbjct: 184 KSAPDR-ADVARDV--NESMVVELYSR 207 >gi|300114712|ref|YP_003761287.1| 30S ribosomal protein S4 [Nitrosococcus watsonii C-113] gi|299540649|gb|ADJ28966.1| ribosomal protein S4 [Nitrosococcus watsonii C-113] Length = 208 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/212 (38%), Positives = 127/212 (59%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQ-RRKSKPSYFGLQLRAK 55 M+K K K RR G +L+ + P++++ PG HG R+++ S + LQLR K Sbjct: 1 MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGTRRARMSDYALQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKLRRMYG-VLERQFRRYYKEAARRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDN 174 +NH+ +LVNG+ +NI SY+ + DV+ V++K+K+ + A +LA+ R E++ +N Sbjct: 120 INHKGILVNGQGINIPSYQVRAEDVVAVREKAKKQDRIKFALELAQARTEAEWMEINAGK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P + P +Q NLVVE YS+ Sbjct: 180 LEGVFKRVPERSELAP---DIQENLVVELYSK 208 >gi|257425833|ref|ZP_05602257.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428499|ref|ZP_05604897.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431133|ref|ZP_05607510.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 68-397] gi|257433815|ref|ZP_05610173.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus E1410] gi|257436732|ref|ZP_05612776.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus M876] gi|282911345|ref|ZP_06319147.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WBG10049] gi|282914514|ref|ZP_06322300.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M899] gi|282924860|ref|ZP_06332526.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C101] gi|293503592|ref|ZP_06667439.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 58-424] gi|293510608|ref|ZP_06669313.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus M809] gi|293537149|ref|ZP_06671829.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M1015] gi|257271527|gb|EEV03673.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275340|gb|EEV06827.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257278081|gb|EEV08729.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 68-397] gi|257281908|gb|EEV12045.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus E1410] gi|257284083|gb|EEV14206.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus M876] gi|282313226|gb|EFB43622.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C101] gi|282321695|gb|EFB52020.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M899] gi|282325040|gb|EFB55350.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WBG10049] gi|290919994|gb|EFD97062.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M1015] gi|291095258|gb|EFE25523.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 58-424] gi|291466499|gb|EFF09020.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus M809] gi|312437824|gb|ADQ76895.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH60] Length = 200 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPSQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|329962292|ref|ZP_08300298.1| ribosomal protein S4 [Bacteroides fluxus YIT 12057] gi|328530400|gb|EGF57277.1| ribosomal protein S4 [Bacteroides fluxus YIT 12057] Length = 201 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 126/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + VNG VN+ SY K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVNGEVVNVPSYAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +L+VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHLIVELYSK 201 >gi|220912772|ref|YP_002488081.1| 30S ribosomal protein S4 [Arthrobacter chlorophenolicus A6] gi|254764565|sp|B8H9C3|RS4_ARTCA RecName: Full=30S ribosomal protein S4 gi|219859650|gb|ACL39992.1| RNA-binding S4 domain protein [Arthrobacter chlorophenolicus A6] Length = 208 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 8/207 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R + ++ R +G L + + R YGPG HG+ RK + S + ++LR KQ+++ YG Sbjct: 6 RARRQARLSRSLGIALTPKAAKYMERRPYGPGEHGRARKKQDSDYAVRLREKQRLRAQYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I E + F+EA R++G T NLI LE RLD +V RA F TI ARQ V HRH+LV Sbjct: 66 -IREAQMTRAFEEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATF 179 +G V+ S+R EG ++ V +S+ + + A+ A RD VP Y+ V + + A Sbjct: 125 DGIRVDRPSFRVGEGQLVHVHSRSETMVPLQVAAAGAHRDVLPAVPAYLDVKLEALQARL 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P K PV + LVVEFY+R Sbjct: 185 VRRP---KRSEIPVTCEEQLVVEFYAR 208 >gi|229524553|ref|ZP_04413958.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae bv. albensis VL426] gi|229338134|gb|EEO03151.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++AE R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPPWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRMPER-SDLSADINEQ--LIVELYSK 206 >gi|307128728|ref|YP_003880758.1| 30S ribosomal protein S4 [Candidatus Sulcia muelleri CARI] gi|306483190|gb|ADM90060.1| 30S ribosomal protein S4 [Candidatus Sulcia muelleri CARI] Length = 204 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 6/208 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M+K K KI R+ GE ++G + Y PG HG +RR K S++ +QL KQK+ Sbjct: 1 MAKYIGPKTKISRKFGELIYGNYNKSFEKKKYPPGQHGNNRRRNIKKSFYSIQLLEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++FR +F +A + +G L+ ESRLD IVYR K + ARQ V+H Sbjct: 61 KYTYG-ILERQFRKMFYKASKKKGIKGEILLQLCESRLDNIVYRLKLSHSRPEARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RH+ VNG+ VNI SY K GD I +K+KSK+ +++ S + +++S +H M+ Sbjct: 120 RHITVNGKIVNIPSYNLKPGDKISLKEKSKKHKAIIYDSNRLLGSIKKWLSWDHHKMIGI 179 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F IP K +P + NL+VE YS+ Sbjct: 180 FKSIPKR-KQIPEKI--NENLIVELYSK 204 >gi|269104036|ref|ZP_06156733.1| SSU ribosomal protein S4p (S9e) [Photobacterium damselae subsp. damselae CIP 102761] gi|268163934|gb|EEZ42430.1| SSU ribosomal protein S4p (S9e) [Photobacterium damselae subsp. damselae CIP 102761] Length = 206 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ ++EA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYQEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ SY+ DV+ +++K+K A + A ++A +R++P ++ V++ M Sbjct: 119 SHKAILVNGQVVNVPSYKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADI--NEHLIVELYSK 206 >gi|262341037|ref|YP_003283892.1| 30S ribosomal protein S4 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272374|gb|ACY40282.1| 30S ribosomal protein S4 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 208 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/207 (42%), Positives = 120/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M+K K KI RR GE ++G K + R Y G HG RR+ K S + +QL KQK K Sbjct: 7 MAKYIGPKTKISRRFGECIYGEDKY-FDRRKYPSGQHGNNRRRGKRSEYFIQLIEKQKAK 65 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F +F EA R +G T L+ ESRLD IV+R KF P+ +ARQ V+HR Sbjct: 66 YTYG-ILERQFEKLFFEAARKKGITGELLLQACESRLDNIVFRLKFAPSRSSARQIVSHR 124 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VN R VNI S+R K GD I V++KSK+ +L++ Q + E++ + NMV F Sbjct: 125 HIFVNDRIVNIPSFRLKPGDKIGVREKSKKHPIILDSIQKKTGTLVEWLIFDEKNMVGIF 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P K P ++ L+VE YS+ Sbjct: 185 RVMP---KRTQIPENIKEQLIVELYSK 208 >gi|55821964|ref|YP_140406.1| 30S ribosomal protein S4 [Streptococcus thermophilus LMG 18311] gi|55823881|ref|YP_142322.1| 30S ribosomal protein S4 [Streptococcus thermophilus CNRZ1066] gi|55737949|gb|AAV61591.1| 30S ribosomal protein S4 [Streptococcus thermophilus LMG 18311] gi|55739866|gb|AAV63507.1| 30S ribosomal protein S4 [Streptococcus thermophilus CNRZ1066] Length = 217 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 15 MSRYTGPSWKQSRRLGFSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 73 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 74 SYG-LSEKQFRNLFVQATKVKGGTLGFNFMILLERRLDNVVYRLGLATTRRQARQFVNHG 132 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 133 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-ATIGRPAFVSFDAEKLEGSL 191 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 192 TRLPE--RDEINPEINEA-LVVEFYNK 215 >gi|315125002|ref|YP_004067006.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018724|gb|ADT66817.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 208 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG R K K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGAR-KGKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARREGNTGILLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLVNG+ V+I S+R + G IE+ +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVVIPV--EERFIVELYSK 208 >gi|73542839|ref|YP_297359.1| 30S ribosomal protein S4 [Ralstonia eutropha JMP134] gi|90101711|sp|Q46WG8|RS4_RALEJ RecName: Full=30S ribosomal protein S4 gi|72120252|gb|AAZ62515.1| SSU ribosomal protein S4P [Ralstonia eutropha JMP134] Length = 207 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI ++++SK+ + EA LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPDR-ADISGDI--NESLIVELYSR 207 >gi|258420636|ref|ZP_05683575.1| SSU ribosomal protein S4 [Staphylococcus aureus A9719] gi|257843240|gb|EEV67650.1| SSU ribosomal protein S4 [Staphylococcus aureus A9719] Length = 200 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + P + L+VE+YSR Sbjct: 178 CLPERSE---LPAEINEQLIVEYYSR 200 >gi|229076157|ref|ZP_04209125.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-18] gi|229099115|ref|ZP_04230049.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-29] gi|229105283|ref|ZP_04235932.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-28] gi|229118145|ref|ZP_04247504.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-3] gi|228665368|gb|EEL20851.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-3] gi|228678209|gb|EEL32437.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-28] gi|228684343|gb|EEL38287.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-29] gi|228707020|gb|EEL59225.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-18] Length = 200 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 R---HAERSELAAEINEALIVEFYSR 200 >gi|170700719|ref|ZP_02891714.1| ribosomal protein S4 [Burkholderia ambifaria IOP40-10] gi|171318373|ref|ZP_02907531.1| ribosomal protein S4 [Burkholderia ambifaria MEX-5] gi|152060939|sp|Q0BJ21|RS4_BURCM RecName: Full=30S ribosomal protein S4 gi|170134389|gb|EDT02722.1| ribosomal protein S4 [Burkholderia ambifaria IOP40-10] gi|171096451|gb|EDT41350.1| ribosomal protein S4 [Burkholderia ambifaria MEX-5] Length = 207 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GD++ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQMPER-ADIAGDI--NESLIVELYSR 207 >gi|258622736|ref|ZP_05717754.1| 30S ribosomal protein S4 [Vibrio mimicus VM573] gi|262166593|ref|ZP_06034330.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus VM223] gi|258584924|gb|EEW09655.1| 30S ribosomal protein S4 [Vibrio mimicus VM573] gi|262026309|gb|EEY44977.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus VM223] Length = 202 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V+H+ +LV Sbjct: 63 -VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAILV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NG+ VN+ S+ DV+ +++K+K+ + + A ++AE R+ P +I V+ + M TF R+ Sbjct: 122 NGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDVNTMEGTFKRL 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + Q L+VE YS+ Sbjct: 182 PER-SDLSADINEQ--LIVELYSK 202 >gi|194246704|ref|YP_002004343.1| 30S ribosomal protein S4 [Candidatus Phytoplasma mali] gi|254764605|sp|B3QZW0|RS4_PHYMT RecName: Full=30S ribosomal protein S4 gi|193807061|emb|CAP18497.1| SSU ribosomal protein S4 [Candidatus Phytoplasma mali] Length = 199 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 127/207 (61%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+ +L K + R Y PG+HG++R Y GLQL+ KQK++ Sbjct: 1 MSRYTGSIWKVSRRLNYSLSETGKELIK-RPYAPGMHGKKRIKAKDY-GLQLQEKQKVRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISEK+F+ IFK+A + +G + LESRLD +VYR F T ARQ VNH H Sbjct: 59 TYG-ISEKQFKKIFKDAGKLKGIHGEMFLFLLESRLDNVVYRLGFAKTRQQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LV+G+ V+I SY + G +I +K+KSK L V EA LA + + +YIS+N + +V + Sbjct: 118 ILVDGKKVDIPSYSLRVGQIITLKEKSKDLIIVKEA--LANKLNRVDYISLNKE-LVGKY 174 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VRIP +D P I + L+VEFY+R Sbjct: 175 VRIPH--RDELLPNI-KEQLIVEFYNR 198 >gi|167838187|ref|ZP_02465046.1| 30S ribosomal protein S4 [Burkholderia thailandensis MSMB43] Length = 207 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVVSIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQMPER-ADIAGDI--NESLIVELYSR 207 >gi|134096297|ref|YP_001101372.1| 30S ribosomal protein S4 [Herminiimonas arsenicoxydans] gi|172044175|sp|A4G9R4|RS4_HERAR RecName: Full=30S ribosomal protein S4 gi|133740200|emb|CAL63251.1| 30S ribosomal subunit protein S4 [Herminiimonas arsenicoxydans] Length = 207 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 123/207 (59%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGNQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR F EADR +G+T L+ LE+RLD +VYR F T RQ V+H+ Sbjct: 65 MYG-ILERQFRRYFAEADRRKGNTGETLLKLLETRLDNVVYRMGFGSTRAEGRQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VNG VNI SY+ K GD++ V++KSK+ ++EA LAE+ +P +++V+ M TF Sbjct: 124 FTVNGIVVNIASYQVKPGDIVAVREKSKKQVRIVEALSLAEQIGMPSWVAVDSKKMEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ V +L+VE YSR Sbjct: 184 KSVPDR-SEIAADV--NESLIVELYSR 207 >gi|86152218|ref|ZP_01070429.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 260.94] gi|86153129|ref|ZP_01071334.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612243|ref|YP_001001237.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81-176] gi|153952009|ref|YP_001398874.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. doylei 269.97] gi|157415814|ref|YP_001483070.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81116] gi|167006130|ref|ZP_02271888.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81-176] gi|283956978|ref|ZP_06374450.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1336] gi|152060941|sp|A1W1J6|RS4_CAMJJ RecName: Full=30S ribosomal protein S4 gi|171769457|sp|A7H5U4|RS4_CAMJD RecName: Full=30S ribosomal protein S4 gi|172047193|sp|A8FNQ6|RS4_CAMJ8 RecName: Full=30S ribosomal protein S4 gi|85840707|gb|EAQ57958.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 260.94] gi|85844014|gb|EAQ61224.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249805|gb|EAQ72764.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81-176] gi|152939455|gb|ABS44196.1| ribosomal protein S4 [Campylobacter jejuni subsp. doylei 269.97] gi|157386778|gb|ABV53093.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 81116] gi|283791479|gb|EFC30276.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 1336] gi|307748451|gb|ADN91721.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni M1] gi|315931273|gb|EFV10243.1| ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 327] Length = 208 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG R K K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGAR-KGKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLVNG+ V+I S+R + G IE+ +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVVIPV--EERFIVELYSK 208 >gi|152986119|ref|YP_001346247.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PA7] gi|171460894|sp|A6UZL2|RS4_PSEA7 RecName: Full=30S ribosomal protein S4 gi|150961277|gb|ABR83302.1| ribosomal protein S4 [Pseudomonas aeruginosa PA7] Length = 206 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++EA R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ +++KS+ + +A +L +R E++ V+ D Sbjct: 119 SHKAITVNGQTVNIPSYQVKAGDVVAIREKSRNQLRIAQALELCGQRGRVEWVEVDLDKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P+ D+ + NL+VE YS+ Sbjct: 179 TGTFKSVPAR-SDLSADI--NENLIVELYSK 206 >gi|116670828|ref|YP_831761.1| 30S ribosomal protein S4 [Arthrobacter sp. FB24] gi|152060932|sp|A0JX91|RS4_ARTS2 RecName: Full=30S ribosomal protein S4 gi|116610937|gb|ABK03661.1| SSU ribosomal protein S4P [Arthrobacter sp. FB24] Length = 208 Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 113/201 (56%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + + R YGPG HG+ RK + S + ++LR KQ+++ YG I E + Sbjct: 12 RLSRALGIALTPKAAKYMERRPYGPGEHGRARKKQDSDYAVRLREKQRLRAQYG-IREAQ 70 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 F+EA R++G T NLI LE RLD +V RA F TI ARQ V HRH+LV+G V+ Sbjct: 71 MTRAFEEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVD 130 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S+R EG ++ V +S+ + A+ A RD VP Y+ V D + A VR P Sbjct: 131 RPSFRVGEGQLVHVHSRSETMPPFQVAAAGAHRDVLPQVPAYLDVKLDALQARLVRRP-- 188 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K PV + LVVEFY+R Sbjct: 189 -KRSEVPVTCEEQLVVEFYAR 208 >gi|269837093|ref|YP_003319321.1| 30S ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745] gi|269786356|gb|ACZ38499.1| ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 13/198 (6%) Query: 16 GENLWGRPKSPVNTR----SYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 GE +G PK P+ R ++ PG HGQ+R +PS +GLQLR KQK+++ YG I E++FR Sbjct: 23 GERCFG-PKCPIVQRQPAKNFPPGQHGQKRTRRPSEYGLQLREKQKIRRMYG-IMERQFR 80 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 F+EA+R G T NL+ LE RLD +VYR F + ARQ V H H VNGR NI Sbjct: 81 RHFEEAERRGGVTGENLLQILEMRLDNVVYRLGFADSRNQARQLVRHGHFTVNGRKTNIP 140 Query: 132 SYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATFVRIPS--SLKD 188 S+ K GDV+ V+ +S++ + A + VPE+IS + +++ + P+ ++ Sbjct: 141 SFIVKPGDVVAVRPQSREREYFKIVAETAGSKQVPEWISRDMESLSGRIINAPTPDQIER 200 Query: 189 VPYPVIMQPNLVVEFYSR 206 P+ LVVEFYSR Sbjct: 201 PPF----NEQLVVEFYSR 214 >gi|329766877|ref|ZP_08258405.1| 30S ribosomal protein S4 [Gemella haemolysans M341] gi|328837602|gb|EGF87227.1| 30S ribosomal protein S4 [Gemella haemolysans M341] Length = 200 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGENFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SY K G V+ V++KS+ L + EA ++ VPEY++ + D + + V Sbjct: 119 VLVDGKKVDIASYAVKPGQVVSVREKSRNLEIIKEAVEITNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + +P I + L+VE+YSR Sbjct: 178 RLPE--RSELHPEINE-QLIVEYYSR 200 >gi|254509448|ref|ZP_05121526.1| ribosomal protein S4 [Vibrio parahaemolyticus 16] gi|323495528|ref|ZP_08100602.1| 30S ribosomal protein S4 [Vibrio sinaloensis DSM 21326] gi|219547621|gb|EED24668.1| ribosomal protein S4 [Vibrio parahaemolyticus 16] gi|323319409|gb|EGA72346.1| 30S ribosomal protein S4 [Vibrio sinaloensis DSM 21326] Length = 206 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+++ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVAIREKAQKQSRIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + Q L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|124003687|ref|ZP_01688535.1| ribosomal protein S4 [Microscilla marina ATCC 23134] gi|123990742|gb|EAY30209.1| ribosomal protein S4 [Microscilla marina ATCC 23134] Length = 200 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE + G P + ++Y PG HG+ R+ K S + +QL+AKQK+K Sbjct: 1 MARYRGPKSKISRKFGEPIMG-PSKALQKKAYPPGQHGKGRRKKQSEYAIQLQAKQKVKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F ++F +A +G T NL+ FLE+RLD VYR PT AARQ V H+H Sbjct: 60 IYG-VLERQFANLFDKAAGKQGITGENLLKFLEARLDNTVYRLGIAPTRRAARQLVIHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG N+ SY K GD++ V++KSK L V E S ++ ++ + M F+ Sbjct: 119 ITVNGEVANVPSYSLKPGDIVGVREKSKSLEVVTE-SLMSNSKRFNWLEWDSTMMAGKFL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +P V Q L+VE YS+ Sbjct: 178 SYPER-DQIPEKV--QEQLIVELYSK 200 >gi|59710868|ref|YP_203644.1| 30S ribosomal protein S4 [Vibrio fischeri ES114] gi|197334188|ref|YP_002155020.1| ribosomal protein S4 [Vibrio fischeri MJ11] gi|75507103|sp|Q5E890|RS4_VIBF1 RecName: Full=30S ribosomal protein S4 gi|226695098|sp|B5FGE0|RS4_VIBFM RecName: Full=30S ribosomal protein S4 gi|59478969|gb|AAW84756.1| 30S ribosomal subunit protein S4 [Vibrio fischeri ES114] gi|197315678|gb|ACH65125.1| ribosomal protein S4 [Vibrio fischeri MJ11] Length = 206 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 130/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKDAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++AE R+ P +I V+ M Sbjct: 119 SHKSILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADI--NEHLIVELYSK 206 >gi|326793582|ref|YP_004311402.1| ribosomal protein S4 [Marinomonas mediterranea MMB-1] gi|326544346|gb|ADZ89566.1| ribosomal protein S4 [Marinomonas mediterranea MMB-1] Length = 206 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+HG RR + S +GLQLR KQK+++ YG + EK+FR+ +K A R +G T NL+ LE Sbjct: 38 PGVHGARR-GRLSDYGLQLREKQKVRRTYG-VLEKQFRNYYKHAARIKGATGENLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYRA F T ARQ V H+ +LVNG +VN+ SY+ K GDV+ +++K+K+ + Sbjct: 96 SRLDNVVYRAGFGSTRAEARQLVGHKGILVNGETVNVASYQVKAGDVVSIREKAKKQLRI 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +L++ R +I V+ + ATF P + + NL+VE YS+ Sbjct: 156 QNALELSKNRTSIHWIEVDATKLEATFKAAP---ERADLSAEINENLIVELYSK 206 >gi|89898802|ref|YP_515912.1| 30S ribosomal protein S4 [Chlamydophila felis Fe/C-56] gi|123482660|sp|Q252M1|RS4_CHLFF RecName: Full=30S ribosomal protein S4 gi|89332174|dbj|BAE81767.1| 30S ribosomal protein S4 [Chlamydophila felis Fe/C-56] Length = 209 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRSRNPLLKKPHPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ FKE +G + + E RLD +VYR F TIFAA+Q V H H Sbjct: 60 CYGMILEKQLVKAFKEVVHKQGSVTKMFLERFECRLDNMVYRMGFAKTIFAAQQLVAHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VLVNG+ V+ S+ + G + +K+KS++L SV E+ + E +P YIS++ N Sbjct: 120 VLVNGKKVDRRSFFLRPGMQVSLKEKSRKLQSVQESLENKDESSLPSYISLDKGNFKGEL 179 Query: 180 VRIPSSLK---DVPYPVIMQPNLVVEFYS 205 + P + +P PV + ++V EF S Sbjct: 180 LMSPEQDQMEAQLPLPVDI--SVVCEFLS 206 >gi|115350347|ref|YP_772186.1| 30S ribosomal protein S4 [Burkholderia ambifaria AMMD] gi|115280335|gb|ABI85852.1| SSU ribosomal protein S4P [Burkholderia ambifaria AMMD] Length = 213 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 125/207 (60%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 14 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 70 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 71 IYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKS 129 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG N+ S + K GD++ +++K+K+ A ++EA LAE+ +P +++V+ TF Sbjct: 130 ITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFEGTF 189 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P D+ + +L+VE YSR Sbjct: 190 KQMPER-ADIAGDI--NESLIVELYSR 213 >gi|56460992|ref|YP_156273.1| 30S ribosomal protein S4 [Idiomarina loihiensis L2TR] gi|61215388|sp|Q5QXV7|RS4_IDILO RecName: Full=30S ribosomal protein S4 gi|56180002|gb|AAV82724.1| Ribosomal protein S4 [Idiomarina loihiensis L2TR] Length = 206 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 130/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RR + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIET---APGQHGARR-GRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ V+VNG+ VNI S++ + DV+ V++K+K+ A + A +LAE R+ P +I V++ Sbjct: 116 QLVSHKAVVVNGQVVNIPSFKVRPEDVVSVREKAKKQARIGAALELAEQREKPVWIEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F R+P D+ + Q L+VE YS+ Sbjct: 176 NKLEGAFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|312889341|ref|ZP_07748895.1| SSU ribosomal protein S4P [Mucilaginibacter paludis DSM 18603] gi|311298218|gb|EFQ75333.1| SSU ribosomal protein S4P [Mucilaginibacter paludis DSM 18603] Length = 202 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 121/209 (57%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI RR E ++G P + ++Y PG+HG +R+ K S + QL KQK+K Sbjct: 1 MARYTGPKSKIARRFREPIFG-PDKALERKNYPPGMHGASKRRGKQSEYSTQLMEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F ++F A G T NL+ FLE+RLD VYR PT ARQ V H+ Sbjct: 60 YTYG-VLEKQFENLFHRASSKEGITGENLLKFLEARLDNAVYRLGIAPTRSGARQLVGHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD--NMVA 177 H+ VNG VNI SY K GDVI V++KSK + S+ + +A R + ++ + D N+ Sbjct: 119 HITVNGEVVNIASYALKAGDVIAVREKSKTMESI--TTSVAGRRINKHSWLEWDPSNLTG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P+ +D P ++ NL+VE YS+ Sbjct: 177 KFLNYPN--RD-EIPENIKENLIVELYSK 202 >gi|270294726|ref|ZP_06200927.1| 30S ribosomal protein S4 [Bacteroides sp. D20] gi|270273973|gb|EFA19834.1| 30S ribosomal protein S4 [Bacteroides sp. D20] Length = 201 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-ILEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VNI SY K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +L+VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHLIVELYSK 201 >gi|49079326|gb|AAT49880.1| PA4239 [synthetic construct] Length = 207 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++EA R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ V++KSK + +A +L +R E++ V+ D Sbjct: 119 SHKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ D+ + NL+VE YS+ Sbjct: 179 AGTFKSAPAR-SDLSADI--NENLIVELYSK 206 >gi|15599435|ref|NP_252929.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO1] gi|107103755|ref|ZP_01367673.1| hypothetical protein PaerPA_01004826 [Pseudomonas aeruginosa PACS2] gi|116052274|ref|YP_788880.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa UCBPP-PA14] gi|218889432|ref|YP_002438296.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa LESB58] gi|254237103|ref|ZP_04930426.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa C3719] gi|254242910|ref|ZP_04936232.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 2192] gi|296387204|ref|ZP_06876703.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAb1] gi|313111393|ref|ZP_07797198.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 39016] gi|12230936|sp|O52759|RS4_PSEAE RecName: Full=30S ribosomal protein S4 gi|122261423|sp|Q02T56|RS4_PSEAB RecName: Full=30S ribosomal protein S4 gi|226699107|sp|B7V667|RS4_PSEA8 RecName: Full=30S ribosomal protein S4 gi|9950456|gb|AAG07627.1|AE004841_5 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO1] gi|115587495|gb|ABJ13510.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa UCBPP-PA14] gi|126169034|gb|EAZ54545.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa C3719] gi|126196288|gb|EAZ60351.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 2192] gi|218769655|emb|CAW25415.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa LESB58] gi|310883700|gb|EFQ42294.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 39016] Length = 206 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++EA R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ V++KSK + +A +L +R E++ V+ D Sbjct: 119 SHKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ D+ + NL+VE YS+ Sbjct: 179 AGTFKSAPAR-SDLSADI--NENLIVELYSK 206 >gi|283953794|ref|ZP_06371325.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 414] gi|283794835|gb|EFC33573.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni 414] Length = 208 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG R K K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGAR-KGKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HVLV+G+ V+I S+R K G IE+ +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHVLVDGKRVDIPSFRVKAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVVIPV--EERFIVELYSK 208 >gi|315127932|ref|YP_004069935.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. SM9913] gi|315016446|gb|ADT69784.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. SM9913] gi|332037269|gb|EGI73724.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ +LVNGR VNI SY D + +++KSK A ++ A +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +F R+P D+ + Q L+VE YS+ Sbjct: 176 KKLEGSFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|317495364|ref|ZP_07953733.1| ribosomal protein S4 [Gemella moribillum M424] gi|316914423|gb|EFV35900.1| ribosomal protein S4 [Gemella moribillum M424] Length = 200 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGENFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SY K G V+ V++KS+ L + EA ++ VPEY++ + D + + V Sbjct: 119 VLVDGKKVDIASYAVKPGQVVSVREKSRNLEIIKEAVEVTNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + +P I + L+VE+YSR Sbjct: 178 RLPE--RSELHPEINE-QLIVEYYSR 200 >gi|327325138|gb|EGE66944.1| ribosomal protein S4 [Propionibacterium acnes HL096PA3] Length = 201 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RSRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|91785440|ref|YP_560646.1| 30S ribosomal protein S4 [Burkholderia xenovorans LB400] gi|123358404|sp|Q13TJ5|RS4_BURXL RecName: Full=30S ribosomal protein S4 gi|91689394|gb|ABE32594.1| SSU ribosomal protein S4P [Burkholderia xenovorans LB400] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 124/207 (59%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++VNG NI S + K GDV+ V+++ K+ A +LEA LAE+ +P +++V+ TF Sbjct: 124 IMVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDSKKFEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+ + +L+VE YSR Sbjct: 184 KQKPER-SDIAGDI--NESLIVELYSR 207 >gi|325963404|ref|YP_004241310.1| 30S ribosomal protein S4P [Arthrobacter phenanthrenivorans Sphe3] gi|323469491|gb|ADX73176.1| SSU ribosomal protein S4P [Arthrobacter phenanthrenivorans Sphe3] Length = 208 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 8/207 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R + ++ R +G L + + R YGPG HG+ RK + S + ++LR KQ+++ YG Sbjct: 6 RARRQARLSRSLGIALTPKAAKYMERRPYGPGEHGRARKKQDSDYAVRLREKQRLRAQYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I E + F+EA R++G T NLI LE RLD +V RA F TI ARQ V HRH++V Sbjct: 66 -IREAQMTRAFEEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHIMV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATF 179 +G V+ S+R EG +I V +S+ + + A+ A RD VP Y+ V + + A Sbjct: 125 DGVRVDRPSFRVGEGQLIHVHSRSETMVPLQVAAAGAHRDVLPAVPGYLDVKLEALQARL 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P K PV + LVVEFY+R Sbjct: 185 VRRP---KRSEVPVTCEEQLVVEFYAR 208 >gi|57238607|ref|YP_179738.1| 30S ribosomal protein S4 [Campylobacter jejuni RM1221] gi|148925738|ref|ZP_01809426.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CG8486] gi|205355608|ref|ZP_03222378.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CG8421] gi|81675536|sp|Q5HSJ7|RS4_CAMJR RecName: Full=30S ribosomal protein S4 gi|57167411|gb|AAW36190.1| ribosomal protein S4 [Campylobacter jejuni RM1221] gi|145845748|gb|EDK22839.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CG8486] gi|205346385|gb|EDZ33018.1| 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni CG8421] gi|315059045|gb|ADT73374.1| SSU ribosomal protein S4p [Campylobacter jejuni subsp. jejuni S3] Length = 208 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG R K K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGAR-KGKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I S+R + G IE+ +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVVIPV--EERFIVELYSK 208 >gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 EDL933] gi|15833415|ref|NP_312188.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. Sakai] gi|16131175|ref|NP_417755.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] gi|26249881|ref|NP_755921.1| 30S ribosomal protein S4 [Escherichia coli CFT073] gi|74313815|ref|YP_312234.1| 30S ribosomal protein S4 [Shigella sonnei Ss046] gi|82545659|ref|YP_409606.1| 30S ribosomal protein S4 [Shigella boydii Sb227] gi|82778592|ref|YP_404941.1| 30S ribosomal protein S4 [Shigella dysenteriae Sd197] gi|89110714|ref|AP_004494.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. W3110] gi|91212723|ref|YP_542709.1| 30S ribosomal protein S4 [Escherichia coli UTI89] gi|110643535|ref|YP_671265.1| 30S ribosomal protein S4 [Escherichia coli 536] gi|110807144|ref|YP_690664.1| 30S ribosomal protein S4 [Shigella flexneri 5 str. 8401] gi|117625578|ref|YP_858901.1| 30S ribosomal protein S4 [Escherichia coli APEC O1] gi|157148871|ref|YP_001456190.1| 30S ribosomal protein S4 [Citrobacter koseri ATCC BAA-895] gi|157156792|ref|YP_001464764.1| 30S ribosomal protein S4 [Escherichia coli E24377A] gi|157162770|ref|YP_001460088.1| 30S ribosomal protein S4 [Escherichia coli HS] gi|161486375|ref|NP_839574.2| 30S ribosomal protein S4 [Shigella flexneri 2a str. 2457T] gi|168752255|ref|ZP_02777277.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4113] gi|168758524|ref|ZP_02783531.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4401] gi|168764979|ref|ZP_02789986.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4501] gi|168769158|ref|ZP_02794165.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4486] gi|168777846|ref|ZP_02802853.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4196] gi|168783864|ref|ZP_02808871.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4076] gi|168786186|ref|ZP_02811193.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC869] gi|168802725|ref|ZP_02827732.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC508] gi|170018468|ref|YP_001723422.1| 30S ribosomal protein S4 [Escherichia coli ATCC 8739] gi|170082816|ref|YP_001732136.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. DH10B] gi|170683332|ref|YP_001745558.1| 30S ribosomal protein S4 [Escherichia coli SMS-3-5] gi|170769606|ref|ZP_02904059.1| ribosomal protein S4 [Escherichia albertii TW07627] gi|187732648|ref|YP_001881981.1| 30S ribosomal protein S4 [Shigella boydii CDC 3083-94] gi|188495865|ref|ZP_03003135.1| ribosomal protein S4 [Escherichia coli 53638] gi|191174447|ref|ZP_03035948.1| ribosomal protein S4 [Escherichia coli F11] gi|193066487|ref|ZP_03047531.1| ribosomal protein S4 [Escherichia coli E22] gi|193071545|ref|ZP_03052454.1| ribosomal protein S4 [Escherichia coli E110019] gi|194430280|ref|ZP_03062775.1| ribosomal protein S4 [Escherichia coli B171] gi|194435081|ref|ZP_03067319.1| ribosomal protein S4 [Shigella dysenteriae 1012] gi|194439993|ref|ZP_03072051.1| ribosomal protein S4 [Escherichia coli 101-1] gi|195939844|ref|ZP_03085226.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. EC4024] gi|208806540|ref|ZP_03248877.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4206] gi|208812921|ref|ZP_03254250.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4045] gi|208819506|ref|ZP_03259826.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4042] gi|209396300|ref|YP_002272752.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4115] gi|209920762|ref|YP_002294846.1| 30S ribosomal protein S4 [Escherichia coli SE11] gi|215488596|ref|YP_002331027.1| 30S ribosomal protein S4 [Escherichia coli O127:H6 str. E2348/69] gi|217325090|ref|ZP_03441174.1| ribosomal protein S4 [Escherichia coli O157:H7 str. TW14588] gi|218550572|ref|YP_002384363.1| 30S ribosomal protein S4 [Escherichia fergusonii ATCC 35469] gi|218555854|ref|YP_002388767.1| 30S ribosomal protein S4 [Escherichia coli IAI1] gi|218560358|ref|YP_002393271.1| 30S ribosomal protein S4 [Escherichia coli S88] gi|218691583|ref|YP_002399795.1| 30S ribosomal protein S4 [Escherichia coli ED1a] gi|218696989|ref|YP_002404656.1| 30S ribosomal protein S4 [Escherichia coli 55989] gi|218702059|ref|YP_002409688.1| 30S ribosomal protein S4 [Escherichia coli IAI39] gi|218706904|ref|YP_002414423.1| 30S ribosomal protein S4 [Escherichia coli UMN026] gi|227883428|ref|ZP_04001233.1| 30S ribosomal protein S4 [Escherichia coli 83972] gi|237703026|ref|ZP_04533507.1| 30S ribosomal subunit protein S4 [Escherichia sp. 3_2_53FAA] gi|238902387|ref|YP_002928183.1| 30S ribosomal subunit protein S4 [Escherichia coli BW2952] gi|253771880|ref|YP_003034711.1| 30S ribosomal protein S4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038457|ref|ZP_04872513.1| ribosomal protein S4 [Escherichia sp. 1_1_43] gi|254163224|ref|YP_003046332.1| 30S ribosomal protein S4 [Escherichia coli B str. REL606] gi|254795233|ref|YP_003080070.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. TW14359] gi|256020655|ref|ZP_05434520.1| 30S ribosomal protein S4 [Shigella sp. D9] gi|256025976|ref|ZP_05439841.1| 30S ribosomal protein S4 [Escherichia sp. 4_1_40B] gi|260846094|ref|YP_003223872.1| 30S ribosomal subunit protein S4 [Escherichia coli O103:H2 str. 12009] gi|260857417|ref|YP_003231308.1| 30S ribosomal subunit protein S4 [Escherichia coli O26:H11 str. 11368] gi|260870039|ref|YP_003236441.1| 30S ribosomal subunit protein S4 [Escherichia coli O111:H- str. 11128] gi|261224601|ref|ZP_05938882.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. FRIK2000] gi|261254505|ref|ZP_05947038.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. FRIK966] gi|291284654|ref|YP_003501472.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. CB9615] gi|293406893|ref|ZP_06650817.1| rpsD [Escherichia coli FVEC1412] gi|293412715|ref|ZP_06655383.1| 30S ribosomal protein S4 [Escherichia coli B354] gi|293416715|ref|ZP_06659352.1| 30S ribosomal protein S4 [Escherichia coli B185] gi|293453615|ref|ZP_06664034.1| 30S ribosomal protein S4 [Escherichia coli B088] gi|297517820|ref|ZP_06936206.1| 30S ribosomal protein S4 [Escherichia coli OP50] gi|298382634|ref|ZP_06992229.1| small subunit ribosomal protein S4 [Escherichia coli FVEC1302] gi|300815493|ref|ZP_07095718.1| ribosomal protein S4 [Escherichia coli MS 107-1] gi|300822900|ref|ZP_07103036.1| ribosomal protein S4 [Escherichia coli MS 119-7] gi|300896645|ref|ZP_07115161.1| ribosomal protein S4 [Escherichia coli MS 198-1] gi|300903545|ref|ZP_07121467.1| ribosomal protein S4 [Escherichia coli MS 84-1] gi|300918271|ref|ZP_07134875.1| ribosomal protein S4 [Escherichia coli MS 115-1] gi|300921894|ref|ZP_07138050.1| ribosomal protein S4 [Escherichia coli MS 182-1] gi|300932190|ref|ZP_07147469.1| ribosomal protein S4 [Escherichia coli MS 187-1] gi|300935295|ref|ZP_07150305.1| ribosomal protein S4 [Escherichia coli MS 21-1] gi|300946519|ref|ZP_07160784.1| ribosomal protein S4 [Escherichia coli MS 116-1] gi|300954829|ref|ZP_07167255.1| ribosomal protein S4 [Escherichia coli MS 175-1] gi|300973976|ref|ZP_07172383.1| ribosomal protein S4 [Escherichia coli MS 200-1] gi|300979869|ref|ZP_07174745.1| ribosomal protein S4 [Escherichia coli MS 45-1] gi|301018838|ref|ZP_07183082.1| ribosomal protein S4 [Escherichia coli MS 69-1] gi|301046068|ref|ZP_07193246.1| ribosomal protein S4 [Escherichia coli MS 185-1] gi|301305506|ref|ZP_07211598.1| ribosomal protein S4 [Escherichia coli MS 124-1] gi|301325136|ref|ZP_07218670.1| ribosomal protein S4 [Escherichia coli MS 78-1] gi|301643883|ref|ZP_07243914.1| ribosomal protein S4 [Escherichia coli MS 146-1] gi|306816361|ref|ZP_07450499.1| 30S ribosomal protein S4 [Escherichia coli NC101] gi|307139979|ref|ZP_07499335.1| 30S ribosomal protein S4 [Escherichia coli H736] gi|307315125|ref|ZP_07594708.1| ribosomal protein S4 [Escherichia coli W] gi|309794572|ref|ZP_07688994.1| ribosomal protein S4 [Escherichia coli MS 145-7] gi|331643992|ref|ZP_08345121.1| ribosomal protein S4 [Escherichia coli H736] gi|331649093|ref|ZP_08350179.1| ribosomal protein S4 [Escherichia coli M605] gi|331654889|ref|ZP_08355888.1| ribosomal protein S4 [Escherichia coli M718] gi|331659586|ref|ZP_08360524.1| ribosomal protein S4 [Escherichia coli TA206] gi|331664909|ref|ZP_08365810.1| ribosomal protein S4 [Escherichia coli TA143] gi|331670125|ref|ZP_08370964.1| ribosomal protein S4 [Escherichia coli TA271] gi|331674802|ref|ZP_08375559.1| ribosomal protein S4 [Escherichia coli TA280] gi|331679365|ref|ZP_08380035.1| ribosomal protein S4 [Escherichia coli H591] gi|331684938|ref|ZP_08385524.1| ribosomal protein S4 [Escherichia coli H299] gi|62288978|sp|P0A7V8|RS4_ECOLI RecName: Full=30S ribosomal protein S4 gi|62288979|sp|P0A7V9|RS4_ECOL6 RecName: Full=30S ribosomal protein S4 gi|62288980|sp|P0A7W0|RS4_ECO57 RecName: Full=30S ribosomal protein S4 gi|90101715|sp|Q31VY0|RS4_SHIBS RecName: Full=30S ribosomal protein S4 gi|90101716|sp|Q32B55|RS4_SHIDS RecName: Full=30S ribosomal protein S4 gi|90101726|sp|Q3YWW3|RS4_SHISS RecName: Full=30S ribosomal protein S4 gi|122957945|sp|Q0TCG5|RS4_ECOL5 RecName: Full=30S ribosomal protein S4 gi|123047859|sp|Q0T006|RS4_SHIF8 RecName: Full=30S ribosomal protein S4 gi|123387796|sp|Q1R636|RS4_ECOUT RecName: Full=30S ribosomal protein S4 gi|152060947|sp|A1AGI7|RS4_ECOK1 RecName: Full=30S ribosomal protein S4 gi|171855222|sp|A7ZSI5|RS4_ECO24 RecName: Full=30S ribosomal protein S4 gi|172044361|sp|A8A5A1|RS4_ECOHS RecName: Full=30S ribosomal protein S4 gi|172045593|sp|A8AQJ1|RS4_CITK8 RecName: Full=30S ribosomal protein S4 gi|189045379|sp|B1IQ03|RS4_ECOLC RecName: Full=30S ribosomal protein S4 gi|226695077|sp|B2U2R5|RS4_SHIB3 RecName: Full=30S ribosomal protein S4 gi|226699056|sp|B7NLL6|RS4_ECO7I RecName: Full=30S ribosomal protein S4 gi|226699057|sp|B7M102|RS4_ECO8A RecName: Full=30S ribosomal protein S4 gi|226699058|sp|B1X6E8|RS4_ECODH RecName: Full=30S ribosomal protein S4 gi|226699059|sp|B7NDR8|RS4_ECOLU RecName: Full=30S ribosomal protein S4 gi|226699060|sp|B6I210|RS4_ECOSE RecName: Full=30S ribosomal protein S4 gi|226699061|sp|B1LHB0|RS4_ECOSM RecName: Full=30S ribosomal protein S4 gi|226699064|sp|B7LRR3|RS4_ESCF3 RecName: Full=30S ribosomal protein S4 gi|226732180|sp|B7MCR2|RS4_ECO45 RecName: Full=30S ribosomal protein S4 gi|226732181|sp|B5YT15|RS4_ECO5E RecName: Full=30S ribosomal protein S4 gi|254764587|sp|B7UK20|RS4_ECO27 RecName: Full=30S ribosomal protein S4 gi|254764588|sp|B7LHZ8|RS4_ECO55 RecName: Full=30S ribosomal protein S4 gi|254764589|sp|B7N181|RS4_ECO81 RecName: Full=30S ribosomal protein S4 gi|259495276|sp|C4ZUF1|RS4_ECOBW RecName: Full=30S ribosomal protein S4 gi|116666551|pdb|1VS5|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|116666603|pdb|1VS7|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|256032366|pdb|3E1A|R Chain R, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre-Accommodation State gi|256032423|pdb|3E1C|R Chain R, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Post-Accommodation State gi|257097325|pdb|3I1M|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097377|pdb|3I1O|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097429|pdb|3I1Q|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097483|pdb|3I1S|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097537|pdb|3I1Z|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097592|pdb|3I21|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|290560310|pdb|3KC4|D Chain D, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3kcr gi|308198690|pdb|3OR9|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|308198711|pdb|3ORA|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|326634282|pdb|3IZV|H Chain H, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Small Subunit Of A Ribosome Programmed With A Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu gi|326634307|pdb|3IZW|H Chain H, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding.This Entry Contains The Small Subunit Of A Ribosome Programmed With A Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu gi|12517925|gb|AAG58417.1|AE005556_10 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. EDL933] gi|26110309|gb|AAN82495.1|AE016767_255 30S ribosomal protein S4 [Escherichia coli CFT073] gi|42798|emb|CAA26394.1| unnamed protein product [Escherichia coli] gi|606231|gb|AAA58094.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] gi|1789691|gb|AAC76321.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] gi|13363634|dbj|BAB37584.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. Sakai] gi|73857292|gb|AAZ89999.1| 30S ribosomal subunit protein S4 [Shigella sonnei Ss046] gi|81242740|gb|ABB63450.1| 30S ribosomal subunit protein S4 [Shigella dysenteriae Sd197] gi|81247070|gb|ABB67778.1| 30S ribosomal subunit protein S4 [Shigella boydii Sb227] gi|85676745|dbj|BAE77995.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K12 substr. W3110] gi|91074297|gb|ABE09178.1| 30S ribosomal subunit protein S4 [Escherichia coli UTI89] gi|110345127|gb|ABG71364.1| 30S ribosomal protein S4 [Escherichia coli 536] gi|110616692|gb|ABF05359.1| 30S ribosomal subunit protein S4 [Shigella flexneri 5 str. 8401] gi|115514702|gb|ABJ02777.1| 30S ribosomal subunit protein S4 [Escherichia coli APEC O1] gi|157068450|gb|ABV07705.1| ribosomal protein S4 [Escherichia coli HS] gi|157078822|gb|ABV18530.1| ribosomal protein S4 [Escherichia coli E24377A] gi|157086076|gb|ABV15754.1| hypothetical protein CKO_04709 [Citrobacter koseri ATCC BAA-895] gi|169753396|gb|ACA76095.1| ribosomal protein S4 [Escherichia coli ATCC 8739] gi|169890651|gb|ACB04358.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. DH10B] gi|170121663|gb|EDS90594.1| ribosomal protein S4 [Escherichia albertii TW07627] gi|170521050|gb|ACB19228.1| ribosomal protein S4 [Escherichia coli SMS-3-5] gi|187429640|gb|ACD08914.1| ribosomal protein S4 [Shigella boydii CDC 3083-94] gi|187767007|gb|EDU30851.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4196] gi|188013855|gb|EDU51977.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4113] gi|188491064|gb|EDU66167.1| ribosomal protein S4 [Escherichia coli 53638] gi|188998873|gb|EDU67859.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4076] gi|189354671|gb|EDU73090.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4401] gi|189361855|gb|EDU80274.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4486] gi|189365129|gb|EDU83545.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4501] gi|189374088|gb|EDU92504.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC869] gi|189375351|gb|EDU93767.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC508] gi|190905255|gb|EDV64893.1| ribosomal protein S4 [Escherichia coli F11] gi|192925868|gb|EDV80518.1| ribosomal protein S4 [Escherichia coli E22] gi|192955133|gb|EDV85627.1| ribosomal protein S4 [Escherichia coli E110019] gi|194411669|gb|EDX27996.1| ribosomal protein S4 [Escherichia coli B171] gi|194416688|gb|EDX32819.1| ribosomal protein S4 [Shigella dysenteriae 1012] gi|194421045|gb|EDX37074.1| ribosomal protein S4 [Escherichia coli 101-1] gi|208726341|gb|EDZ75942.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4206] gi|208734198|gb|EDZ82885.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4045] gi|208739629|gb|EDZ87311.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4042] gi|209157700|gb|ACI35133.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4115] gi|209757278|gb|ACI76951.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757280|gb|ACI76952.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757282|gb|ACI76953.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757284|gb|ACI76954.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757286|gb|ACI76955.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209914021|dbj|BAG79095.1| 30S ribosomal protein S4 [Escherichia coli SE11] gi|215266668|emb|CAS11107.1| 30S ribosomal subunit protein S4 [Escherichia coli O127:H6 str. E2348/69] gi|217321311|gb|EEC29735.1| ribosomal protein S4 [Escherichia coli O157:H7 str. TW14588] gi|218353721|emb|CAU99998.1| 30S ribosomal subunit protein S4 [Escherichia coli 55989] gi|218358113|emb|CAQ90760.1| 30S ribosomal subunit protein S4 [Escherichia fergusonii ATCC 35469] gi|218362622|emb|CAR00248.1| 30S ribosomal subunit protein S4 [Escherichia coli IAI1] gi|218367127|emb|CAR04901.1| 30S ribosomal subunit protein S4 [Escherichia coli S88] gi|218372045|emb|CAR19905.1| 30S ribosomal subunit protein S4 [Escherichia coli IAI39] gi|218429147|emb|CAR10099.2| 30S ribosomal subunit protein S4 [Escherichia coli ED1a] gi|218434001|emb|CAR14918.1| 30S ribosomal subunit protein S4 [Escherichia coli UMN026] gi|222035005|emb|CAP77748.1| 30S ribosomal protein S4 [Escherichia coli LF82] gi|226838963|gb|EEH70986.1| ribosomal protein S4 [Escherichia sp. 1_1_43] gi|226902290|gb|EEH88549.1| 30S ribosomal subunit protein S4 [Escherichia sp. 3_2_53FAA] gi|227839572|gb|EEJ50038.1| 30S ribosomal protein S4 [Escherichia coli 83972] gi|238859799|gb|ACR61797.1| 30S ribosomal subunit protein S4 [Escherichia coli BW2952] gi|242378823|emb|CAQ33615.1| 30S ribosomal subunit protein S4, subunit of 30S ribosomal subunit and ribosome [Escherichia coli BL21(DE3)] gi|253322924|gb|ACT27526.1| ribosomal protein S4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975125|gb|ACT40796.1| 30S ribosomal protein S4 [Escherichia coli B str. REL606] gi|253979281|gb|ACT44951.1| 30S ribosomal protein S4 [Escherichia coli BL21(DE3)] gi|254594633|gb|ACT73994.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. TW14359] gi|257756066|dbj|BAI27568.1| 30S ribosomal subunit protein S4 [Escherichia coli O26:H11 str. 11368] gi|257761241|dbj|BAI32738.1| 30S ribosomal subunit protein S4 [Escherichia coli O103:H2 str. 12009] gi|257766395|dbj|BAI37890.1| 30S ribosomal subunit protein S4 [Escherichia coli O111:H- str. 11128] gi|260447685|gb|ACX38107.1| ribosomal protein S4 [Escherichia coli DH1] gi|281180331|dbj|BAI56661.1| 30S ribosomal protein S4 [Escherichia coli SE15] gi|281602661|gb|ADA75645.1| 30S ribosomal protein S4 [Shigella flexneri 2002017] gi|284923302|emb|CBG36396.1| 30S ribosomal subunit protein S4 [Escherichia coli 042] gi|290764527|gb|ADD58488.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. CB9615] gi|291321741|gb|EFE61172.1| 30S ribosomal protein S4 [Escherichia coli B088] gi|291425704|gb|EFE98738.1| rpsD [Escherichia coli FVEC1412] gi|291431291|gb|EFF04276.1| 30S ribosomal protein S4 [Escherichia coli B185] gi|291468362|gb|EFF10855.1| 30S ribosomal protein S4 [Escherichia coli B354] gi|294491877|gb|ADE90633.1| ribosomal protein S4 [Escherichia coli IHE3034] gi|298276470|gb|EFI17988.1| small subunit ribosomal protein S4 [Escherichia coli FVEC1302] gi|300301894|gb|EFJ58279.1| ribosomal protein S4 [Escherichia coli MS 185-1] gi|300308986|gb|EFJ63506.1| ribosomal protein S4 [Escherichia coli MS 200-1] gi|300318229|gb|EFJ68013.1| ribosomal protein S4 [Escherichia coli MS 175-1] gi|300359476|gb|EFJ75346.1| ribosomal protein S4 [Escherichia coli MS 198-1] gi|300399548|gb|EFJ83086.1| ribosomal protein S4 [Escherichia coli MS 69-1] gi|300404418|gb|EFJ87956.1| ribosomal protein S4 [Escherichia coli MS 84-1] gi|300409380|gb|EFJ92918.1| ribosomal protein S4 [Escherichia coli MS 45-1] gi|300414532|gb|EFJ97842.1| ribosomal protein S4 [Escherichia coli MS 115-1] gi|300421742|gb|EFK05053.1| ribosomal protein S4 [Escherichia coli MS 182-1] gi|300453765|gb|EFK17385.1| ribosomal protein S4 [Escherichia coli MS 116-1] gi|300459451|gb|EFK22944.1| ribosomal protein S4 [Escherichia coli MS 21-1] gi|300460014|gb|EFK23507.1| ribosomal protein S4 [Escherichia coli MS 187-1] gi|300524666|gb|EFK45735.1| ribosomal protein S4 [Escherichia coli MS 119-7] gi|300532385|gb|EFK53447.1| ribosomal protein S4 [Escherichia coli MS 107-1] gi|300839201|gb|EFK66961.1| ribosomal protein S4 [Escherichia coli MS 124-1] gi|300848015|gb|EFK75775.1| ribosomal protein S4 [Escherichia coli MS 78-1] gi|301077786|gb|EFK92592.1| ribosomal protein S4 [Escherichia coli MS 146-1] gi|305850757|gb|EFM51214.1| 30S ribosomal protein S4 [Escherichia coli NC101] gi|306905474|gb|EFN36009.1| ribosomal protein S4 [Escherichia coli W] gi|307555384|gb|ADN48159.1| 30S ribosomal subunit protein S4 [Escherichia coli ABU 83972] gi|307628331|gb|ADN72635.1| 30S ribosomal protein S4 [Escherichia coli UM146] gi|308121622|gb|EFO58884.1| ribosomal protein S4 [Escherichia coli MS 145-7] gi|309703708|emb|CBJ03049.1| 30S ribosomal subunit protein S4 [Escherichia coli ETEC H10407] gi|312947847|gb|ADR28674.1| 30S ribosomal protein S4 [Escherichia coli O83:H1 str. NRG 857C] gi|315062588|gb|ADT76915.1| 30S ribosomal subunit protein S4 [Escherichia coli W] gi|315137871|dbj|BAJ45030.1| 30S ribosomal protein S4 [Escherichia coli DH1] gi|315255880|gb|EFU35848.1| ribosomal protein S4 [Escherichia coli MS 85-1] gi|315284628|gb|EFU44073.1| ribosomal protein S4 [Escherichia coli MS 110-3] gi|315292386|gb|EFU51738.1| ribosomal protein S4 [Escherichia coli MS 153-1] gi|315298595|gb|EFU57850.1| ribosomal protein S4 [Escherichia coli MS 16-3] gi|320182706|gb|EFW57592.1| SSU ribosomal protein S4p (S9e) [Shigella boydii ATCC 9905] gi|320639601|gb|EFX09195.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. G5101] gi|320645099|gb|EFX14115.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. 493-89] gi|320650410|gb|EFX18876.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. H 2687] gi|320655935|gb|EFX23855.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661387|gb|EFX28802.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. USDA 5905] gi|320666409|gb|EFX33392.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. LSU-61] gi|323162975|gb|EFZ48810.1| ribosomal protein S4 [Escherichia coli E128010] gi|323173932|gb|EFZ59560.1| ribosomal protein S4 [Escherichia coli LT-68] gi|323189099|gb|EFZ74383.1| ribosomal protein S4 [Escherichia coli RN587/1] gi|323376825|gb|ADX49093.1| ribosomal protein S4 [Escherichia coli KO11] gi|323934505|gb|EGB30913.1| ribosomal protein S4 [Escherichia coli E1520] gi|323939282|gb|EGB35494.1| ribosomal protein S4 [Escherichia coli E482] gi|323944283|gb|EGB40359.1| ribosomal protein S4 [Escherichia coli H120] gi|323950210|gb|EGB46092.1| ribosomal protein S4 [Escherichia coli H252] gi|323954581|gb|EGB50364.1| ribosomal protein S4 [Escherichia coli H263] gi|323959553|gb|EGB55206.1| ribosomal protein S4 [Escherichia coli H489] gi|323966258|gb|EGB61693.1| ribosomal protein S4 [Escherichia coli M863] gi|323970100|gb|EGB65374.1| ribosomal protein S4 [Escherichia coli TA007] gi|323974751|gb|EGB69864.1| ribosomal protein S4 [Escherichia coli TW10509] gi|324009031|gb|EGB78250.1| ribosomal protein S4 [Escherichia coli MS 57-2] gi|324014913|gb|EGB84132.1| ribosomal protein S4 [Escherichia coli MS 60-1] gi|324017885|gb|EGB87104.1| ribosomal protein S4 [Escherichia coli MS 117-3] gi|324111975|gb|EGC05954.1| ribosomal protein S4 [Escherichia fergusonii B253] gi|324116314|gb|EGC10234.1| ribosomal protein S4 [Escherichia coli E1167] gi|327250944|gb|EGE62637.1| ribosomal protein S4 [Escherichia coli STEC_7v] gi|331036286|gb|EGI08512.1| ribosomal protein S4 [Escherichia coli H736] gi|331041591|gb|EGI13735.1| ribosomal protein S4 [Escherichia coli M605] gi|331046904|gb|EGI18982.1| ribosomal protein S4 [Escherichia coli M718] gi|331052801|gb|EGI24834.1| ribosomal protein S4 [Escherichia coli TA206] gi|331057419|gb|EGI29405.1| ribosomal protein S4 [Escherichia coli TA143] gi|331062187|gb|EGI34107.1| ribosomal protein S4 [Escherichia coli TA271] gi|331067711|gb|EGI39109.1| ribosomal protein S4 [Escherichia coli TA280] gi|331072537|gb|EGI43862.1| ribosomal protein S4 [Escherichia coli H591] gi|331077309|gb|EGI48521.1| ribosomal protein S4 [Escherichia coli H299] gi|332090406|gb|EGI95504.1| ribosomal protein S4 [Shigella boydii 3594-74] gi|332104203|gb|EGJ07549.1| 30S ribosomal subunit protein S4 [Shigella sp. D9] Length = 206 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|171914054|ref|ZP_02929524.1| 30S ribosomal protein S4 [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 11/210 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 M++ K KI RR G L+G P + R++ PG HG R + K S +G+ L KQK++ Sbjct: 1 MARYTGPKEKIARRFGVALFG-PSKALELRNFPPGQHGARNTRRKLSDYGIALAEKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR F EA R +G T L+ LE RLD +VYR F + FAARQ V H Sbjct: 60 HTYG-VLEKQFRRFFAEASRRKGVTGTILLQMLEQRLDNVVYRMGFANSRFAARQMVGHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQ--KSKQLAS-VLEASQLAERDVPEYISVNHDNMV 176 HV VNG+ NI S + K GDV+ VK +S+QLA+ L+ +Q + P++++V+ D + Sbjct: 119 HVTVNGKRCNIASAQIKAGDVVAVKSTARSQQLANRFLDLTQGV--NSPDWMTVDRDKLT 176 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R P + V + LVVE YSR Sbjct: 177 GTVNRSPEREE---IDVFVNEQLVVELYSR 203 >gi|237749539|ref|ZP_04580019.1| small subunit ribosomal protein S4 [Oxalobacter formigenes OXCC13] gi|229380901|gb|EEO30992.1| small subunit ribosomal protein S4 [Oxalobacter formigenes OXCC13] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 125/207 (60%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++T+ PG HG + ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLDSKCKLDTK---PGQHGAKSGARTSDYGNQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR F EA+R +G+T NL+ LESRLD +VYR F T +RQ V+H+ Sbjct: 65 MYG-ILERQFRRYFAEAERRKGNTGDNLMQLLESRLDNVVYRMGFGSTRAESRQLVSHQA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++VNG+ VNI SY K DVI +++KSK+ ++E+ LAE+ + +++SV+ M F Sbjct: 124 LMVNGKVVNIPSYLVKPEDVITIREKSKKQNRIVESLSLAEQIGMADWVSVDSKKMEGVF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + + +L++E YSR Sbjct: 184 KRIPDR---SEFANDVNESLIIELYSR 207 >gi|15618643|ref|NP_224929.1| 30S ribosomal protein S4 [Chlamydophila pneumoniae CWL029] gi|15836265|ref|NP_300789.1| 30S ribosomal protein S4 [Chlamydophila pneumoniae J138] gi|16752308|ref|NP_444565.1| 30S ribosomal protein S4 [Chlamydophila pneumoniae AR39] gi|33242092|ref|NP_877033.1| 30S ribosomal protein S4 [Chlamydophila pneumoniae TW-183] gi|7388204|sp|Q9Z7H2|RS4_CHLPN RecName: Full=30S ribosomal protein S4 gi|4377038|gb|AAD18872.1| S4 Ribosomal Protein [Chlamydophila pneumoniae CWL029] gi|7188952|gb|AAF37909.1| ribosomal protein S4 [Chlamydophila pneumoniae AR39] gi|8979105|dbj|BAA98940.1| S4 ribosomal protein [Chlamydophila pneumoniae J138] gi|33236602|gb|AAP98690.1| ribosomal protein S4 [Chlamydophila pneumoniae TW-183] gi|269302522|gb|ACZ32622.1| ribosomal protein S4 [Chlamydophila pneumoniae LPCoLN] Length = 209 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+++ RR G N++GR ++P+ + + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRVARRFGANIFGRSRNPLLKKPHPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ FKE +G+ + + E RLD +VYR F TIFAA+Q V H H Sbjct: 60 CYGMIMEKQLVKAFKEVIHKQGNVAQMFLERFECRLDNMVYRMGFAKTIFAAQQLVAHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+ S+ + G I +K+KSK+L SV +A + E +P YIS++ Sbjct: 120 ILVNGRRVDRRSFFLRPGMQISLKEKSKRLQSVKDALESKDESSLPSYISLDKTGFKGEL 179 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYS 205 + P + + P+ + ++V EF S Sbjct: 180 LVSPEQDQIEAQLPLPINISVVCEFLS 206 >gi|239905883|ref|YP_002952622.1| 30S ribosomal protein S4 [Desulfovibrio magneticus RS-1] gi|259495275|sp|C4XLK2|RS4_DESMR RecName: Full=30S ribosomal protein S4 gi|239795747|dbj|BAH74736.1| 30S ribosomal protein S4 [Desulfovibrio magneticus RS-1] Length = 208 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K +I RR G L+ + K R Y PG HG+ RK K S + +QLR Sbjct: 1 MARYTEAKCRICRREGAKLFLKGDRCYTDKCAHERRPYAPGQHGRIRK-KMSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK +K YG I E++FR FK AD +G T NL+S LE RLD +YR F + ARQ Sbjct: 60 KQKTRKMYG-ILEEQFRDYFKRADMQKGVTGENLLSALERRLDNTIYRLGFATSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VNI S + K GDVIEV+++++Q +LEA Q +A R P ++ V + Sbjct: 119 LVRHGLFTLNGRRVNIPSLQVKVGDVIEVRERNRQSPIILEAQQVIARRGTPAWLEVEGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ +DV +P+ Q L+VE YS+ Sbjct: 179 KLKGKVIALPTR-EDVQFPINEQ--LIVELYSK 208 >gi|107024278|ref|YP_622605.1| 30S ribosomal protein S4 [Burkholderia cenocepacia AU 1054] gi|116688397|ref|YP_834020.1| 30S ribosomal protein S4 [Burkholderia cenocepacia HI2424] gi|170731707|ref|YP_001763654.1| 30S ribosomal protein S4 [Burkholderia cenocepacia MC0-3] gi|206558666|ref|YP_002229426.1| 30S ribosomal protein S4 [Burkholderia cenocepacia J2315] gi|254246578|ref|ZP_04939899.1| Ribosomal protein S4 [Burkholderia cenocepacia PC184] gi|123371103|sp|Q1BRX3|RS4_BURCA RecName: Full=30S ribosomal protein S4 gi|152060938|sp|A0K3Q0|RS4_BURCH RecName: Full=30S ribosomal protein S4 gi|226697814|sp|B1JU47|RS4_BURCC RecName: Full=30S ribosomal protein S4 gi|226697815|sp|B4E5E5|RS4_BURCJ RecName: Full=30S ribosomal protein S4 gi|105894467|gb|ABF77632.1| SSU ribosomal protein S4P [Burkholderia cenocepacia AU 1054] gi|116646486|gb|ABK07127.1| SSU ribosomal protein S4P [Burkholderia cenocepacia HI2424] gi|124871354|gb|EAY63070.1| Ribosomal protein S4 [Burkholderia cenocepacia PC184] gi|169814949|gb|ACA89532.1| ribosomal protein S4 [Burkholderia cenocepacia MC0-3] gi|198034703|emb|CAR50570.1| 30S ribosomal protein S4 [Burkholderia cenocepacia J2315] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQMP---ERAEIAGDINESLIVELYSR 207 >gi|322391286|ref|ZP_08064757.1| 30S ribosomal protein S4 [Streptococcus peroris ATCC 700780] gi|321145890|gb|EFX41280.1| 30S ribosomal protein S4 [Streptococcus peroris ATCC 700780] Length = 203 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F EA + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVEATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + D + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEFYNK 201 >gi|78064949|ref|YP_367718.1| 30S ribosomal protein S4 [Burkholderia sp. 383] gi|90101679|sp|Q39KE2|RS4_BURS3 RecName: Full=30S ribosomal protein S4 gi|77965694|gb|ABB07074.1| SSU ribosomal protein S4P [Burkholderia sp. 383] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 124/207 (59%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKS 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG N+ S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ TF Sbjct: 124 ITVNGVVANVPSQQVKSGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAKKFEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + + +L+VE YSR Sbjct: 184 KQMP---ERAEIAGDINESLIVELYSR 207 >gi|317401573|gb|EFV82202.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans C54] Length = 207 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR KQK+K+ Sbjct: 8 KCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLREKQKLKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T ARQ V+HR Sbjct: 65 MYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVSHRA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +NG + +I S K GDVI +++K+K+ + E+ LA +P+++ V+ + TF Sbjct: 124 IELNGHTADIASMLVKAGDVISIREKAKKQGRIKESLDLATSIGIPQWVEVDTTKLTGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P DV + ++VVE YSR Sbjct: 184 KSAPDR-ADVARDI--NESMVVELYSR 207 >gi|258591342|emb|CBE67641.1| 30S ribosomal subunit protein S4 [NC10 bacterium 'Dutch sediment'] Length = 192 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 113/183 (61%), Gaps = 6/183 (3%) Query: 25 SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 + R+Y PG+HGQRR +K S + QLR KQKM++ YG + E +FR F+ A++ G T Sbjct: 15 CAIEKRNYAPGMHGQRR-AKVSDYCKQLREKQKMRRIYG-VLETQFRKYFRLAEQQTGMT 72 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 NL+ LE RLD++V+R F + AR + H H+LVNGR +I SYR ++G+ IEV+ Sbjct: 73 GENLVRILEQRLDSVVHRLGFAASRAQARLLITHGHILVNGRKTDIASYRVRQGETIEVR 132 Query: 145 QKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 KS+++ ++ A + + R +P ++ ++ NM T IPS +++ PV + L+V Sbjct: 133 PKSREMTAIKTALEGVKRRTLPSWLELDATNMKGTVRSIPSR-EEIAIPV--EEQLIVAL 189 Query: 204 YSR 206 YS+ Sbjct: 190 YSK 192 >gi|225850762|ref|YP_002730996.1| 30S ribosomal protein S4 [Persephonella marina EX-H1] gi|254764604|sp|C0QQQ0|RS4_PERMH RecName: Full=30S ribosomal protein S4 gi|225645002|gb|ACO03188.1| ribosomal protein S4 [Persephonella marina EX-H1] Length = 205 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 119/201 (59%), Gaps = 11/201 (5%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K+ RR+G + G K+ R++ PG HG Q RK K S + ++L+ KQK++ YG I E Sbjct: 10 KVSRRLGVFVGGSLKA-FQKRNFPPGQHGRVQGRKVKLSDYAIRLQEKQKLRYLYGGIRE 68 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+F+ F EA RS G+T L+ LE RLD +VYR F T ARQ V H H LVNGR Sbjct: 69 KQFKRYFDEAARSAGNTGQILLQLLERRLDNVVYRLGFAKTRRQARQLVRHGHFLVNGRK 128 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVATFVRIPS 184 V+I SYR GD+IE+++KS+ S L L RD +P ++ ++ +N + IP Sbjct: 129 VDIPSYRVDPGDIIELREKSRN--SPLFKENLESRDPRSIPNWLELDKENFRGKVLEIPQ 186 Query: 185 SLKDVPYPVIMQPNLVVEFYS 205 + ++ PV +Q L++EFYS Sbjct: 187 EI-ELEIPVNVQ--LIIEFYS 204 >gi|325104842|ref|YP_004274496.1| SSU ribosomal protein S4P [Pedobacter saltans DSM 12145] gi|324973690|gb|ADY52674.1| SSU ribosomal protein S4P [Pedobacter saltans DSM 12145] Length = 202 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 125/209 (59%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G P + ++Y PG HG +R+ K S + +QL KQK+K Sbjct: 1 MARYTGPKSKIARKFREPIFG-PDKALERKNYPPGQHGPSKRRGKQSEYSIQLTEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F ++FK+A G NL+ LE+RLD +VYR T AARQ V+HR Sbjct: 60 YTYG-VLEKQFSNLFKKASAKGGIAGTNLLQLLEARLDNVVYRLGIATTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD--NMVA 177 H+LVNG VNI S+ + GDVIEV++KSK L ++ + +A R + +Y + D N+ Sbjct: 119 HILVNGELVNIPSFSVRPGDVIEVREKSKSLEAI--TNSVAGRTINKYSWLEWDSKNLTG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F++ P + +P + + NL+VE YS+ Sbjct: 177 KFIQFPDR-ESIPENI--KENLIVELYSK 202 >gi|322418390|ref|YP_004197613.1| 30S ribosomal protein S4 [Geobacter sp. M18] gi|320124777|gb|ADW12337.1| ribosomal protein S4 [Geobacter sp. M18] Length = 208 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + RSY PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGR-IKVSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFESADRMKGVTGENLLFLLERRLDNVVYRLGFATSRDEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR NI S + K GDVI++++KS+++A + E+ + + R +P+++ ++ D Sbjct: 119 LVRHSHFTLNGRKANIPSIQVKAGDVIQLREKSRKIAVITESLEAVVRRGIPQWLELDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T V+ +D+ P+ Q L+VE YS+ Sbjct: 179 AFKGT-VKTSPVREDITMPI--QEQLIVELYSK 208 >gi|54778757|gb|AAV39591.1| ribosomal protein S4 [synthetic construct] Length = 233 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 32 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 90 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 91 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 149 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 150 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 209 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 210 PER-SDLSADI--NEHLIVELYSK 230 >gi|271502222|ref|YP_003335248.1| 30S ribosomal protein S4 [Dickeya dadantii Ech586] gi|270345777|gb|ACZ78542.1| ribosomal protein S4 [Dickeya dadantii Ech586] Length = 206 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ VLVNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|292492445|ref|YP_003527884.1| ribosomal protein S4 [Nitrosococcus halophilus Nc4] gi|291581040|gb|ADE15497.1| ribosomal protein S4 [Nitrosococcus halophilus Nc4] Length = 208 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 128/212 (60%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQ-RRKSKPSYFGLQLRAK 55 M+K K K RR G +L+ + P++++ PG HG R+++ S + LQLR K Sbjct: 1 MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGARRARMSDYALQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR +KEA R RG T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKLRRMYG-VLEKQFRRYYKEAARRRGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDN 174 ++H+ +LVNG+ +N+ SY+ + DV+ V++K+K+ + A +LA+ R ++I +N Sbjct: 120 ISHKGILVNGKVINVPSYQIRAEDVVSVREKAKKQDRIKFALELAQARPELDWIEINMGK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF R+P + P +Q NLVVE YS+ Sbjct: 180 LEGTFKRVPERSELAPD---IQENLVVELYSK 208 >gi|228478099|ref|ZP_04062710.1| ribosomal protein S4 [Streptococcus salivarius SK126] gi|312864106|ref|ZP_07724341.1| ribosomal protein S4 [Streptococcus vestibularis F0396] gi|322374008|ref|ZP_08048542.1| ribosomal protein S4 [Streptococcus sp. C150] gi|322515823|ref|ZP_08068767.1| 30S ribosomal protein S4 [Streptococcus vestibularis ATCC 49124] gi|228250279|gb|EEK09532.1| ribosomal protein S4 [Streptococcus salivarius SK126] gi|311100338|gb|EFQ58546.1| ribosomal protein S4 [Streptococcus vestibularis F0396] gi|321276974|gb|EFX54045.1| ribosomal protein S4 [Streptococcus sp. C150] gi|322125709|gb|EFX97031.1| 30S ribosomal protein S4 [Streptococcus vestibularis ATCC 49124] Length = 203 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGFSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-ATIGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|255011672|ref|ZP_05283798.1| 30S ribosomal protein S4 [Bacteroides fragilis 3_1_12] gi|313149508|ref|ZP_07811701.1| 30S ribosomal protein S4 [Bacteroides fragilis 3_1_12] gi|313138275|gb|EFR55635.1| 30S ribosomal protein S4 [Bacteroides fragilis 3_1_12] Length = 201 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G+ VNI SY K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDEASKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|57504894|ref|ZP_00370869.1| ribosomal protein S4 [Campylobacter coli RM2228] gi|305432399|ref|ZP_07401561.1| 30S ribosomal protein S4 [Campylobacter coli JV20] gi|57019322|gb|EAL56024.1| ribosomal protein S4 [Campylobacter coli RM2228] gi|304444438|gb|EFM37089.1| 30S ribosomal protein S4 [Campylobacter coli JV20] Length = 208 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R Y PG HG R K K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHGAR-KGKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I S+R + G IEV +KSK + A +L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRAIELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KRFGIFTRKPER-EEVIIPV--EERFIVELYSK 208 >gi|295099742|emb|CBK88831.1| SSU ribosomal protein S4P [Eubacterium cylindroides T2-87] Length = 202 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 123/206 (59%), Gaps = 4/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K RR+G ++ + R+Y PG HG R++K + +GLQL+ KQ+++ Sbjct: 1 MSRNTGSTWKKSRRLGFSIL-ETGEELTRRNYVPGQHGNARRAKLTNYGLQLQEKQRIRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +SEK+F + + +A + G + NL+ LESRLD +VYR F T ARQ VNH H Sbjct: 60 TY-QLSEKQFYNTYIKASKRPGPSGENLLVMLESRLDNLVYRMGFARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SY+ K G VIEV+++ K ++ V EA + A V ++ V+ +N T+V Sbjct: 119 ILVNGKKVDIPSYQVKPGTVIEVRERDKNMSVVAEALEAATTRVA-FVEVDAENKKGTYV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + I + LVVEFY+R Sbjct: 178 RYPERNELFTAQPINEL-LVVEFYNR 202 >gi|296875556|ref|ZP_06899628.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 15912] gi|312866896|ref|ZP_07727109.1| ribosomal protein S4 [Streptococcus parasanguinis F0405] gi|296433480|gb|EFH19255.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 15912] gi|311097679|gb|EFQ55910.1| ribosomal protein S4 [Streptococcus parasanguinis F0405] Length = 203 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKVKEGTVGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + D + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATVGRPAFVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|301021164|ref|ZP_07185202.1| ribosomal protein S4 [Escherichia coli MS 196-1] gi|312972443|ref|ZP_07786617.1| ribosomal protein S4 [Escherichia coli 1827-70] gi|30043665|gb|AAP19385.1| 30S ribosomal subunit protein S4 [Shigella flexneri 2a str. 2457T] gi|299881640|gb|EFI89851.1| ribosomal protein S4 [Escherichia coli MS 196-1] gi|310334820|gb|EFQ01025.1| ribosomal protein S4 [Escherichia coli 1827-70] gi|315617098|gb|EFU97708.1| ribosomal protein S4 [Escherichia coli 3431] gi|320187017|gb|EFW61729.1| SSU ribosomal protein S4p (S9e) [Shigella flexneri CDC 796-83] gi|320191670|gb|EFW66320.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str. EC1212] gi|320195388|gb|EFW70015.1| SSU ribosomal protein S4p (S9e) [Escherichia coli WV_060327] gi|320199483|gb|EFW74073.1| SSU ribosomal protein S4p (S9e) [Escherichia coli EC4100B] gi|323154134|gb|EFZ40337.1| ribosomal protein S4 [Escherichia coli EPECa14] gi|323179168|gb|EFZ64742.1| ribosomal protein S4 [Escherichia coli 1180] gi|323182774|gb|EFZ68175.1| ribosomal protein S4 [Escherichia coli 1357] gi|325498865|gb|EGC96724.1| ribosomal protein S4 [Escherichia fergusonii ECD227] gi|326342544|gb|EGD66318.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str. 1044] gi|326344531|gb|EGD68280.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str. 1125] gi|330909340|gb|EGH37854.1| SSU ribosomal protein S4p (S9e) [Escherichia coli AA86] gi|332085445|gb|EGI90611.1| ribosomal protein S4 [Shigella boydii 5216-82] Length = 202 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 122 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 182 PER-SDLSADI--NEHLIVELYSK 202 >gi|50843284|ref|YP_056511.1| 30S ribosomal protein S4 [Propionibacterium acnes KPA171202] gi|282855171|ref|ZP_06264503.1| ribosomal protein S4 [Propionibacterium acnes J139] gi|289424812|ref|ZP_06426594.1| ribosomal protein S4 [Propionibacterium acnes SK187] gi|289427659|ref|ZP_06429371.1| ribosomal protein S4 [Propionibacterium acnes J165] gi|295131353|ref|YP_003582016.1| ribosomal protein S4 [Propionibacterium acnes SK137] gi|61215507|sp|Q6A6R0|RS4_PROAC RecName: Full=30S ribosomal protein S4 gi|50840886|gb|AAT83553.1| 30S ribosomal protein S4 [Propionibacterium acnes KPA171202] gi|282581759|gb|EFB87144.1| ribosomal protein S4 [Propionibacterium acnes J139] gi|289154775|gb|EFD03458.1| ribosomal protein S4 [Propionibacterium acnes SK187] gi|289159150|gb|EFD07342.1| ribosomal protein S4 [Propionibacterium acnes J165] gi|291375309|gb|ADD99163.1| ribosomal protein S4 [Propionibacterium acnes SK137] gi|313763204|gb|EFS34568.1| ribosomal protein S4 [Propionibacterium acnes HL013PA1] gi|313773119|gb|EFS39085.1| ribosomal protein S4 [Propionibacterium acnes HL074PA1] gi|313793291|gb|EFS41349.1| ribosomal protein S4 [Propionibacterium acnes HL110PA1] gi|313801065|gb|EFS42333.1| ribosomal protein S4 [Propionibacterium acnes HL110PA2] gi|313808806|gb|EFS47260.1| ribosomal protein S4 [Propionibacterium acnes HL087PA2] gi|313810400|gb|EFS48114.1| ribosomal protein S4 [Propionibacterium acnes HL083PA1] gi|313812264|gb|EFS49978.1| ribosomal protein S4 [Propionibacterium acnes HL025PA1] gi|313816541|gb|EFS54255.1| ribosomal protein S4 [Propionibacterium acnes HL059PA1] gi|313817985|gb|EFS55699.1| ribosomal protein S4 [Propionibacterium acnes HL046PA2] gi|313819898|gb|EFS57612.1| ribosomal protein S4 [Propionibacterium acnes HL036PA1] gi|313823389|gb|EFS61103.1| ribosomal protein S4 [Propionibacterium acnes HL036PA2] gi|313824860|gb|EFS62574.1| ribosomal protein S4 [Propionibacterium acnes HL063PA1] gi|313828398|gb|EFS66112.1| ribosomal protein S4 [Propionibacterium acnes HL063PA2] gi|313830102|gb|EFS67816.1| ribosomal protein S4 [Propionibacterium acnes HL007PA1] gi|313832626|gb|EFS70340.1| ribosomal protein S4 [Propionibacterium acnes HL056PA1] gi|313837982|gb|EFS75696.1| ribosomal protein S4 [Propionibacterium acnes HL086PA1] gi|314914365|gb|EFS78196.1| ribosomal protein S4 [Propionibacterium acnes HL005PA4] gi|314917685|gb|EFS81516.1| ribosomal protein S4 [Propionibacterium acnes HL050PA1] gi|314919583|gb|EFS83414.1| ribosomal protein S4 [Propionibacterium acnes HL050PA3] gi|314925755|gb|EFS89586.1| ribosomal protein S4 [Propionibacterium acnes HL036PA3] gi|314930173|gb|EFS94004.1| ribosomal protein S4 [Propionibacterium acnes HL067PA1] gi|314957154|gb|EFT01258.1| ribosomal protein S4 [Propionibacterium acnes HL027PA1] gi|314957795|gb|EFT01898.1| ribosomal protein S4 [Propionibacterium acnes HL002PA1] gi|314960835|gb|EFT04936.1| ribosomal protein S4 [Propionibacterium acnes HL002PA2] gi|314963509|gb|EFT07609.1| ribosomal protein S4 [Propionibacterium acnes HL082PA1] gi|314964877|gb|EFT08976.1| ribosomal protein S4 [Propionibacterium acnes HL082PA2] gi|314969908|gb|EFT14006.1| ribosomal protein S4 [Propionibacterium acnes HL037PA1] gi|314973049|gb|EFT17145.1| ribosomal protein S4 [Propionibacterium acnes HL053PA1] gi|314975545|gb|EFT19640.1| ribosomal protein S4 [Propionibacterium acnes HL045PA1] gi|314979766|gb|EFT23860.1| ribosomal protein S4 [Propionibacterium acnes HL072PA2] gi|314984828|gb|EFT28920.1| ribosomal protein S4 [Propionibacterium acnes HL005PA1] gi|314986087|gb|EFT30179.1| ribosomal protein S4 [Propionibacterium acnes HL005PA2] gi|314988702|gb|EFT32793.1| ribosomal protein S4 [Propionibacterium acnes HL005PA3] gi|315077130|gb|EFT49197.1| ribosomal protein S4 [Propionibacterium acnes HL053PA2] gi|315079817|gb|EFT51793.1| ribosomal protein S4 [Propionibacterium acnes HL078PA1] gi|315083184|gb|EFT55160.1| ribosomal protein S4 [Propionibacterium acnes HL027PA2] gi|315086862|gb|EFT58838.1| ribosomal protein S4 [Propionibacterium acnes HL002PA3] gi|315089954|gb|EFT61930.1| ribosomal protein S4 [Propionibacterium acnes HL072PA1] gi|315090476|gb|EFT62452.1| ribosomal protein S4 [Propionibacterium acnes HL110PA4] gi|315093709|gb|EFT65685.1| ribosomal protein S4 [Propionibacterium acnes HL060PA1] gi|315096724|gb|EFT68700.1| ribosomal protein S4 [Propionibacterium acnes HL038PA1] gi|315097952|gb|EFT69928.1| ribosomal protein S4 [Propionibacterium acnes HL059PA2] gi|315100595|gb|EFT72571.1| ribosomal protein S4 [Propionibacterium acnes HL046PA1] gi|315104001|gb|EFT75977.1| ribosomal protein S4 [Propionibacterium acnes HL050PA2] gi|315106038|gb|EFT78014.1| ribosomal protein S4 [Propionibacterium acnes HL030PA1] gi|315109198|gb|EFT81174.1| ribosomal protein S4 [Propionibacterium acnes HL030PA2] gi|327325233|gb|EGE67038.1| ribosomal protein S4 [Propionibacterium acnes HL096PA2] gi|327325529|gb|EGE67328.1| ribosomal protein S4 [Propionibacterium acnes HL103PA1] gi|327332742|gb|EGE74476.1| ribosomal protein S4 [Propionibacterium acnes HL097PA1] gi|327451455|gb|EGE98109.1| ribosomal protein S4 [Propionibacterium acnes HL087PA3] gi|327451570|gb|EGE98224.1| ribosomal protein S4 [Propionibacterium acnes HL092PA1] gi|327451857|gb|EGE98511.1| ribosomal protein S4 [Propionibacterium acnes HL083PA2] gi|328752071|gb|EGF65687.1| ribosomal protein S4 [Propionibacterium acnes HL087PA1] gi|328755531|gb|EGF69147.1| ribosomal protein S4 [Propionibacterium acnes HL025PA2] gi|328756316|gb|EGF69932.1| ribosomal protein S4 [Propionibacterium acnes HL020PA1] gi|328761350|gb|EGF74877.1| ribosomal protein S4 [Propionibacterium acnes HL099PA1] Length = 201 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RGRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|77361711|ref|YP_341286.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis TAC125] gi|90101708|sp|Q3IJJ5|RS4_PSEHT RecName: Full=30S ribosomal protein S4 gi|76876622|emb|CAI87844.1| 30S ribosomal subunit protein S4 [Pseudoalteromonas haloplanktis TAC125] Length = 206 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ +LVNGR VN+ SY D + +++KSK A ++ A +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAILVNGRVVNVPSYVIAPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +F R+P D+ + Q L+VE YS+ Sbjct: 176 KKLEGSFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|33357881|pdb|1P6G|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome gi|33357958|pdb|1P87|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome gi|83754042|pdb|2AVY|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|83754098|pdb|2AW7|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138056|pdb|2I2P|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138127|pdb|2I2U|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|157836026|pdb|2QOU|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Spectinomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836077|pdb|2QOW|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Spectinomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836130|pdb|2QOY|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Spectinomycin And Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836181|pdb|2QP0|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Spectinomycin And Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|158429701|pdb|2QAL|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429753|pdb|2QAN|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429811|pdb|2QB9|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429863|pdb|2QBB|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429915|pdb|2QBD|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429967|pdb|2QBF|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430021|pdb|2QBH|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430074|pdb|2QBJ|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431374|pdb|2Z4K|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The First 70s Ribosome, With Paromomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431427|pdb|2Z4M|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The Second 70s Ribosome, With Paromomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|168988791|pdb|2VHO|D Chain D, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 3 Of 4) gi|168988812|pdb|2VHP|D Chain D, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 4 Of 4) gi|197107281|pdb|3DF1|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 30s Subunit Of The First 70s Ribosome, With Hygromycin B Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|197107333|pdb|3DF3|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Hygromycin B Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|224510725|pdb|3FIH|D Chain D, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. gi|294662220|pdb|2WWL|D Chain D, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 30s, The P-Site Trna And The Tnac Leader Peptide (Part 1 Of 2). gi|308387968|pdb|3OFO|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|308387989|pdb|3OFP|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|309320026|pdb|3OFA|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|309320047|pdb|3OFB|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|309320130|pdb|3OFX|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|309320151|pdb|3OFY|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 30s Subunit Of The Second 70s Ribosome gi|315113615|pdb|3OAQ|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|315113636|pdb|3OAR|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|329665995|pdb|3J00|D Chain D, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 205 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 7 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 66 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 125 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 184 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 185 PER-SDLSADI--NEHLIVELYSK 205 >gi|261414617|ref|YP_003248300.1| ribosomal protein S4 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371073|gb|ACX73818.1| ribosomal protein S4 [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327627|gb|ADL26828.1| ribosomal protein S4 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 201 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS K K+ R +G + + + ++ R++ PG HGQ RK S + QL KQ+++ Sbjct: 1 MSSFRGPKGKVARSLGVAVSQKTQKALDRRNFAPGQHGQTRKKSASVYKQQLVEKQRLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +ISE + +KEA+R G NL+ LE+RLD +VYR F TIFAARQ+V H H Sbjct: 61 TY-NISEAQLAKAYKEANRREGSAGDNLMILLETRLDAVVYRMGFARTIFAARQYVAHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VNG S K GDVI V+++SK+ + EA + PEY+SV+ M T V Sbjct: 120 FTVNGVRSFSPSRLIKAGDVIAVREQSKEHVQIKEAIA-SAAAAPEYLSVDLGKMQGTLV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P L+D PV ++ LVVE+YSR Sbjct: 179 KLP--LRD-QIPVKLEEQLVVEYYSR 201 >gi|237728631|ref|ZP_04559112.1| ribosomal protein S4 [Citrobacter sp. 30_2] gi|283835713|ref|ZP_06355454.1| hypothetical protein CIT292_10106 [Citrobacter youngae ATCC 29220] gi|226909253|gb|EEH95171.1| ribosomal protein S4 [Citrobacter sp. 30_2] gi|291068393|gb|EFE06502.1| ribosomal protein S4 [Citrobacter youngae ATCC 29220] Length = 206 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|116667413|pdb|2GY9|D Chain D, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 gi|116667465|pdb|2GYB|D Chain D, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143 Length = 204 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 6 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 64 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 65 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 123 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 124 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 183 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 184 PER-SDLSADI--NEHLIVELYSK 204 >gi|160888373|ref|ZP_02069376.1| hypothetical protein BACUNI_00786 [Bacteroides uniformis ATCC 8492] gi|317477726|ref|ZP_07936919.1| ribosomal protein S4 [Bacteroides sp. 4_1_36] gi|319900951|ref|YP_004160679.1| SSU ribosomal protein S4P [Bacteroides helcogenes P 36-108] gi|156862050|gb|EDO55481.1| hypothetical protein BACUNI_00786 [Bacteroides uniformis ATCC 8492] gi|316906071|gb|EFV27832.1| ribosomal protein S4 [Bacteroides sp. 4_1_36] gi|319415982|gb|ADV43093.1| SSU ribosomal protein S4P [Bacteroides helcogenes P 36-108] Length = 201 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 126/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VNI SY K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +L+VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHLIVELYSK 201 >gi|291619151|ref|YP_003521893.1| RpsD [Pantoea ananatis LMG 20103] gi|291154181|gb|ADD78765.1| RpsD [Pantoea ananatis LMG 20103] Length = 206 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGGQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ VLVNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|291548010|emb|CBL21118.1| SSU ribosomal protein S4P [Ruminococcus sp. SR1/5] Length = 197 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/172 (45%), Positives = 108/172 (62%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQL+ KQK K YG + EK FR+ +K+ADR +G T NL+ LESRLD Sbjct: 33 KRANRKVSEYGLQLKEKQKAKFIYG-VLEKPFRNYYKKADRMQGQTGENLMVMLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 IV+R F T ARQ V+H+HVLVNG+ VNI SY CK GD IE+++KSK + +LE Sbjct: 92 IVFRMGFARTRREARQIVDHKHVLVNGKCVNIPSYLCKAGDTIEIREKSKGSERYKGILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + R VPE+I V+ +N+ +P+ + DVP + L+VE YS+ Sbjct: 152 IT--GGRLVPEWIDVDQENLKGVVKELPTREQIDVP----VNEMLIVELYSK 197 >gi|329942329|ref|ZP_08291139.1| ribosomal protein S4 [Chlamydophila psittaci Cal10] gi|313847567|emb|CBY16555.1| putative 30s ribosomal protein s4 [Chlamydophila psittaci RD1] gi|325507112|gb|ADZ18750.1| 30S ribosomal protein S4 [Chlamydophila psittaci 6BC] gi|328815239|gb|EGF85227.1| ribosomal protein S4 [Chlamydophila psittaci Cal10] gi|328914200|gb|AEB55033.1| ribosomal protein S4 [Chlamydophila psittaci 6BC] Length = 209 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 118/207 (57%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRSRNPLLKKPHPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ FKE +G + + E RLD +VYR F TIFAA+Q V H H Sbjct: 60 CYGMILEKQLVKAFKEVVNKQGSVTKMFLERFECRLDNMVYRMGFAKTIFAAQQLVAHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VLVNG+ V+ S+ + G + +K+KS++L SV E+ + E P YISV+ N Sbjct: 120 VLVNGKKVDRRSFFLRPGMQVSLKEKSRKLQSVKESLENKDESSFPSYISVDKSNFKGEL 179 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYS 205 + P + + P+ + ++V EF S Sbjct: 180 LVSPEQDQIEAQLPLPVDVSVVCEFLS 206 >gi|53715440|ref|YP_101432.1| 30S ribosomal protein S4 [Bacteroides fragilis YCH46] gi|60683412|ref|YP_213556.1| 30S ribosomal protein S4 [Bacteroides fragilis NCTC 9343] gi|265767574|ref|ZP_06095240.1| ribosomal protein S4 [Bacteroides sp. 2_1_16] gi|61215469|sp|Q64NN4|RS4_BACFR RecName: Full=30S ribosomal protein S4 gi|81313536|sp|Q5L8D5|RS4_BACFN RecName: Full=30S ribosomal protein S4 gi|52218305|dbj|BAD50898.1| 30S ribosomal protein S4 [Bacteroides fragilis YCH46] gi|60494846|emb|CAH09653.1| putative 30S ribosomal protein S4 [Bacteroides fragilis NCTC 9343] gi|263252879|gb|EEZ24391.1| ribosomal protein S4 [Bacteroides sp. 2_1_16] gi|301164897|emb|CBW24458.1| putative 30S ribosomal protein S4 [Bacteroides fragilis 638R] Length = 201 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD IV+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQMLEGRLDNIVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G+ VNI SY K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDEASKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|229019885|ref|ZP_04176683.1| 30S ribosomal protein S4 [Bacillus cereus AH1273] gi|229026111|ref|ZP_04182488.1| 30S ribosomal protein S4 [Bacillus cereus AH1272] gi|229032307|ref|ZP_04188280.1| 30S ribosomal protein S4 [Bacillus cereus AH1271] gi|229175366|ref|ZP_04302881.1| 30S ribosomal protein S4 [Bacillus cereus MM3] gi|228608198|gb|EEK65505.1| 30S ribosomal protein S4 [Bacillus cereus MM3] gi|228729087|gb|EEL80090.1| 30S ribosomal protein S4 [Bacillus cereus AH1271] gi|228735189|gb|EEL85807.1| 30S ribosomal protein S4 [Bacillus cereus AH1272] gi|228741405|gb|EEL91607.1| 30S ribosomal protein S4 [Bacillus cereus AH1273] Length = 200 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 ITVDGSRVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 R---HAERSELAAEINEALIVEFYSR 200 >gi|304399266|ref|ZP_07381132.1| ribosomal protein S4 [Pantoea sp. aB] gi|308188332|ref|YP_003932463.1| 30S ribosomal protein S4 [Pantoea vagans C9-1] gi|304353192|gb|EFM17573.1| ribosomal protein S4 [Pantoea sp. aB] gi|308058842|gb|ADO11014.1| 30S ribosomal protein S4 [Pantoea vagans C9-1] Length = 206 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGGQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ VLVNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|325288604|ref|YP_004264785.1| SSU ribosomal protein S4P [Syntrophobotulus glycolicus DSM 8271] gi|324964005|gb|ADY54784.1| SSU ribosomal protein S4P [Syntrophobotulus glycolicus DSM 8271] Length = 209 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K S ++ RR G L+ + K ++ R Y PG+HGQ R KPS FG+QLR Sbjct: 1 MAKYTDSVCRLCRREGIKLFLKGDRCYTNKCSIDRRPYAPGVHGQSRGRKPSDFGIQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I EK+FR F+ A R +G T NL+ LE RLD +VYR F + ARQ Sbjct: 61 KQKARRIYG-IMEKQFRRYFEMASRQKGMTGENLLRLLERRLDNVVYRIGFASSRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 FV H H+ VNG+ V+I SY K G+VI V +KS+ + + E +A+R VP ++S + + Sbjct: 120 FVTHGHITVNGKRVDIASYLIKVGEVIAVNEKSRSSSRIKELIDTMADRSVPGWLSADSN 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T + +PS +D+ P+ + + +VE YSR Sbjct: 180 SASGTVLALPSR-EDIQIPI--EEHFIVEKYSR 209 >gi|304310039|ref|YP_003809637.1| 30S ribosomal protein S4 [gamma proteobacterium HdN1] gi|301795772|emb|CBL43971.1| 30S ribosomal protein S4 [gamma proteobacterium HdN1] Length = 206 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSY-GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L G RS PG HG+RR + S +G QLR KQ Sbjct: 1 MARYLGPKCKLSRREGVDLGLKSGVRAHESKCRSEKAPGQHGERR-GRLSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I EK+FR + EA R +G T NL+ LESRLD +V+R F T ARQ V Sbjct: 60 KVRRIYG-ILEKQFRGYYAEASRRKGSTGENLLQLLESRLDNVVFRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +L+NG++VNI SY+ GDV+ V++KSK + A +LAE R +I V+ Sbjct: 119 SHKAILINGKTVNIPSYQLAAGDVVSVREKSKSQLRIGAAQELAEQRGFAAWIEVDTKKR 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + D+P + NL+VE YS+ Sbjct: 179 EGVFKSVPERI-DLPSDI--NENLIVELYSK 206 >gi|253991665|ref|YP_003043021.1| 30S ribosomal protein S4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783115|emb|CAQ86280.1| 30s ribosomal subunit protein s4 [Photorhabdus asymbiotica] Length = 206 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQPPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+S LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVVYRMGFGATRAESRQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDAVKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---ADLSADINEHLIVELYSK 206 >gi|152980403|ref|YP_001355076.1| 30S ribosomal protein S4 [Janthinobacterium sp. Marseille] gi|179308084|sp|A6T3H9|RS4_JANMA RecName: Full=30S ribosomal protein S4 gi|151280480|gb|ABR88890.1| small subunit ribosomal protein S4 [Janthinobacterium sp. Marseille] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGNQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR F EADR +G+T L+ LE+RLD +VYR F T RQ V+H+ Sbjct: 65 MYG-ILERQFRRYFAEADRRKGNTGETLLKLLEARLDNVVYRMGFGSTRAEGRQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 VNG VNI SY+ K GDVI V++KSK+ ++EA LAE+ +P ++SV+ M T+ Sbjct: 124 FTVNGIVVNIASYQVKPGDVIAVREKSKKQVRIVEALSLAEQSGMPSWVSVDAKKMEGTY 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ V +L+VE YSR Sbjct: 184 KAAPDR-SEIANDV--NESLIVELYSR 207 >gi|331004909|ref|ZP_08328325.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC1989] gi|330421296|gb|EGG95546.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC1989] Length = 205 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/175 (43%), Positives = 113/175 (64%), Gaps = 7/175 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG+HG RR + S +G+QLR KQK+++ YG + EK+FR+ +KEA R +G T NL+ L Sbjct: 37 APGVHGVRR-GRLSDYGVQLREKQKVRRTYG-VLEKQFRAYYKEAARRKGATGENLLKLL 94 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E+RLD +VYR F T +RQ V+H+ +LVNG +VNI SY+ K DVI +++K+K Sbjct: 95 ETRLDNVVYRMGFGSTRAESRQLVSHKSILVNGSTVNIPSYQVKAEDVISIREKAKNQLR 154 Query: 153 VLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A L A+RDV E++ V+ + T R+P +D+P + NL+VE YS+ Sbjct: 155 IKSALDLAAQRDV-EWVEVSAAKLEGTLKRVPDR-EDLPAEI--NENLIVELYSK 205 >gi|22538271|ref|NP_689122.1| 30S ribosomal protein S4 [Streptococcus agalactiae 2603V/R] gi|25012131|ref|NP_736526.1| 30S ribosomal protein S4 [Streptococcus agalactiae NEM316] gi|76787020|ref|YP_330685.1| 30S ribosomal protein S4 [Streptococcus agalactiae A909] gi|76799096|ref|ZP_00781286.1| ribosomal protein S4 [Streptococcus agalactiae 18RS21] gi|77406884|ref|ZP_00783910.1| ribosomal protein S4 [Streptococcus agalactiae H36B] gi|77408905|ref|ZP_00785630.1| ribosomal protein S4 [Streptococcus agalactiae COH1] gi|77410869|ref|ZP_00787226.1| ribosomal protein S4 [Streptococcus agalactiae CJB111] gi|77413207|ref|ZP_00789405.1| ribosomal protein S4 [Streptococcus agalactiae 515] gi|41017840|sp|Q8DWS6|RS4_STRA5 RecName: Full=30S ribosomal protein S4 gi|41017841|sp|Q8E2M6|RS4_STRA3 RecName: Full=30S ribosomal protein S4 gi|90101728|sp|Q3JYG8|RS4_STRA1 RecName: Full=30S ribosomal protein S4 gi|22535185|gb|AAN00995.1|AE014288_13 ribosomal protein S4 [Streptococcus agalactiae 2603V/R] gi|24413675|emb|CAD47755.1| 30S ribosomal protein S4 [Streptococcus agalactiae NEM316] gi|76562077|gb|ABA44661.1| ribosomal protein S4 [Streptococcus agalactiae A909] gi|76585564|gb|EAO62132.1| ribosomal protein S4 [Streptococcus agalactiae 18RS21] gi|77160747|gb|EAO71860.1| ribosomal protein S4 [Streptococcus agalactiae 515] gi|77163087|gb|EAO74041.1| ribosomal protein S4 [Streptococcus agalactiae CJB111] gi|77172496|gb|EAO75640.1| ribosomal protein S4 [Streptococcus agalactiae COH1] gi|77174516|gb|EAO77359.1| ribosomal protein S4 [Streptococcus agalactiae H36B] gi|319746120|gb|EFV98393.1| 30S ribosomal protein S4 [Streptococcus agalactiae ATCC 13813] Length = 203 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A +++ G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKAKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|306834567|ref|ZP_07467680.1| 30S ribosomal protein S4 [Streptococcus bovis ATCC 700338] gi|304423369|gb|EFM26522.1| 30S ribosomal protein S4 [Streptococcus bovis ATCC 700338] Length = 203 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDTEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVE+Y++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEYYNK 201 >gi|259909976|ref|YP_002650332.1| 30S ribosomal protein S4 [Erwinia pyrifoliae Ep1/96] gi|292489825|ref|YP_003532715.1| 30S ribosomal protein S4 [Erwinia amylovora CFBP1430] gi|292900867|ref|YP_003540236.1| 30S ribosomal protein S4 [Erwinia amylovora ATCC 49946] gi|224965598|emb|CAX57130.1| 30S ribosomal protein S4 [Erwinia pyrifoliae Ep1/96] gi|283480075|emb|CAY75991.1| 30S ribosomal protein S4 [Erwinia pyrifoliae DSM 12163] gi|291200715|emb|CBJ47848.1| 30S ribosomal subunit protein S4 [Erwinia amylovora ATCC 49946] gi|291555262|emb|CBA23541.1| 30S ribosomal protein S4 [Erwinia amylovora CFBP1430] gi|312174007|emb|CBX82260.1| 30S ribosomal protein S4 [Erwinia amylovora ATCC BAA-2158] Length = 206 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|330815273|ref|YP_004358978.1| 30S ribosomal protein S4 [Burkholderia gladioli BSR3] gi|327367666|gb|AEA59022.1| 30S ribosomal protein S4 [Burkholderia gladioli BSR3] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V H+ + VNG NI S + K GD+I +++KSK+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVGHKAITVNGIVSNIPSLQVKAGDIIAIREKSKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQVP---ERAEIAGDINESLIVELYSR 207 >gi|126454036|ref|YP_001068009.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106a] gi|167847640|ref|ZP_02473148.1| 30S ribosomal protein S4 [Burkholderia pseudomallei B7210] gi|242314939|ref|ZP_04813955.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106b] gi|171855208|sp|A3P088|RS4_BURP0 RecName: Full=30S ribosomal protein S4 gi|126227678|gb|ABN91218.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106a] gi|242138178|gb|EES24580.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106b] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ V VNG NI S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAVTVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|311109577|ref|YP_003982430.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans A8] gi|310764266|gb|ADP19715.1| ribosomal protein S4 [Achromobacter xylosoxidans A8] Length = 207 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR KQK+K+ Sbjct: 8 KCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLREKQKLKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T ARQ V+HR Sbjct: 65 MYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVSHRA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +NG + +I S K GDV+ +++K+K+ + E+ LA +P+++ V+ + TF Sbjct: 124 IELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDTTKLTGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P DV + ++VVE YSR Sbjct: 184 KSAPDR-ADVARDI--NESMVVELYSR 207 >gi|283788068|ref|YP_003367933.1| 30S ribosomal subunit protein S4 [Citrobacter rodentium ICC168] gi|282951522|emb|CBG91221.1| 30S ribosomal subunit protein S4 [Citrobacter rodentium ICC168] Length = 206 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ R P D+ + +L+VE YS+ Sbjct: 179 EGTYKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|163752126|ref|ZP_02159331.1| 30S ribosomal protein S4 [Shewanella benthica KT99] gi|161327961|gb|EDP99136.1| 30S ribosomal protein S4 [Shewanella benthica KT99] Length = 206 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 132/214 (61%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLDT---APGQHGAR-KTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DVI +++KSK+ A ++ A ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSASDVICIREKSKKQARIVAALEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 TKMEGAFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|116511114|ref|YP_808330.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris SK11] gi|125623168|ref|YP_001031651.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris MG1363] gi|122940375|sp|Q032G4|RS4_LACLS RecName: Full=30S ribosomal protein S4 gi|152060956|sp|A2RI10|RS4_LACLM RecName: Full=30S ribosomal protein S4 gi|116106768|gb|ABJ71908.1| SSU ribosomal protein S4P [Lactococcus lactis subsp. cremoris SK11] gi|124491976|emb|CAL96903.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris MG1363] gi|300069915|gb|ADJ59315.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris NZ9000] Length = 203 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRYGISLTGSGKE-IARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++FR+++ A + + G +N ++ LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-LSERQFRNLYVAATKVKEGTVGYNFMTLLEQRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+R + G VI V++KS ++ ++LEA + A + ++S + D + T Sbjct: 119 HILVDGKRVDIPSFRVQPGQVISVREKSMKVPAILEAVE-ATKGRANFVSFDADKLEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I L+VEFY++ Sbjct: 178 VRLPE--RDEINPEI-NDALIVEFYNK 201 >gi|301057497|ref|ZP_07198593.1| ribosomal protein S4 [delta proteobacterium NaphS2] gi|300448425|gb|EFK12094.1| ribosomal protein S4 [delta proteobacterium NaphS2] Length = 209 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 116/192 (60%), Gaps = 6/192 (3%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G+ +G K R+Y PG HGQRR K S + QLR KQK+K+ YG I EK+F+ + Sbjct: 23 GDRCYG-DKCAFERRAYAPGQHGQRRGGKLSDYSQQLREKQKVKRIYG-ILEKQFKGYYY 80 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A+R +G T NL+ LESRLD +VY+ F + ARQ + H H LVN + VNI SY+ Sbjct: 81 RAERQKGITGTNLLLLLESRLDNVVYKMGFAASRTQARQLIRHNHFLVNQKKVNIPSYQV 140 Query: 136 KEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K GDV+E K+KS++++ ++EA + + R VP ++ V + +P+ +D+ P+ Sbjct: 141 KVGDVVEAKEKSREVSQIIEAMETVVRRGVPGWMEVEKEAFKGMMKGLPNR-EDLTMPI- 198 Query: 195 MQPNLVVEFYSR 206 Q L+VE YS+ Sbjct: 199 -QEQLIVELYSK 209 >gi|218779737|ref|YP_002431055.1| ribosomal protein S4 [Desulfatibacillum alkenivorans AK-01] gi|226697835|sp|B8FER0|RS4_DESAA RecName: Full=30S ribosomal protein S4 gi|218761121|gb|ACL03587.1| ribosomal protein S4 [Desulfatibacillum alkenivorans AK-01] Length = 208 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 111/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + RSY PG HGQRR +K S +G+QLR KQK+K+ YG ++EK+F FK+AD ++G Sbjct: 30 KCAFDRRSYPPGQHGQRR-TKISDYGIQLREKQKIKRMYG-LTEKQFHLTFKKADHAKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD ++YR F ARQ V H H VNG VNI S + GD IEV Sbjct: 88 TGTNLLVNLERRLDNVIYRLGFADCRTQARQMVRHNHFTVNGHKVNIPSAQVSIGDTIEV 147 Query: 144 KQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ +A + A + +A R +P+++ ++ N P +D+ P MQ L+VE Sbjct: 148 REKSRTVAVITNAMEAVARRGLPQWLELDKANFKGVVNAYPVR-EDLTMP--MQEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|302390984|ref|YP_003826804.1| 30S ribosomal protein S4P [Acetohalobium arabaticum DSM 5501] gi|302203061|gb|ADL11739.1| SSU ribosomal protein S4P [Acetohalobium arabaticum DSM 5501] Length = 208 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 115/201 (57%), Gaps = 12/201 (5%) Query: 13 RRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 RR GE L+ + K + R Y PG G +R+ K S FG+QLR KQK+++ YG +S Sbjct: 13 RREGEKLFLKGERCFSDKCAIERRPYAPGEQGNKRQ-KLSEFGVQLREKQKVRQIYG-VS 70 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E +F+ F+ AD G T N + LESRLD IVYR F + ARQ V H H LVNG Sbjct: 71 ESQFKKYFEMADNKPGITGENFLKILESRLDNIVYRLGFAASRNEARQLVRHGHFLVNGE 130 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSS 185 V+I SY +EGD +EVK SK + + E + ++++P ++ N +N ++ P Sbjct: 131 RVDIPSYLVEEGDEVEVKDSSKDMKRMQEIVEFTGQQNIPAWVEANLENKTGKVLKEPER 190 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 +D+ PV Q L+VEFYSR Sbjct: 191 -EDIDLPVREQ--LIVEFYSR 208 >gi|94266329|ref|ZP_01290031.1| Ribosomal protein S4:RNA-binding S4 [delta proteobacterium MLMS-1] gi|93453083|gb|EAT03562.1| Ribosomal protein S4:RNA-binding S4 [delta proteobacterium MLMS-1] Length = 209 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RSY PG HGQ R K S + +QLR KQK+K+ YG + E +F F EA+R RG Sbjct: 30 KCSFERRSYAPGQHGQARLRKVSDYAMQLREKQKVKRMYGML-EGQFHRYFVEAERQRGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD ++YR F + AR V H H L+NG VNI S + K GDV+ V Sbjct: 89 TGENLLRLLECRLDNVIYRLGFASSRNQARHLVRHNHFLLNGHKVNIPSLQVKVGDVLTV 148 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+Q + E+ + +A R VP ++ +N + T P +++ P+ Q L+VE Sbjct: 149 REKSRQKGMIQESLAAMARRGVPTWLELNQEAFSGTVKSAPER-QELTMPI--QEQLIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|289548515|ref|YP_003473503.1| ribosomal protein S4 [Thermocrinis albus DSM 14484] gi|289182132|gb|ADC89376.1| ribosomal protein S4 [Thermocrinis albus DSM 14484] Length = 209 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 117/202 (57%), Gaps = 8/202 (3%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKMKKYYGDI 65 +IDRR G + GR + + R++ PG HG + R+ K + +G++L KQK+K YG I Sbjct: 10 RIDRRFGVVVSGRKSAARILAKRNFPPGQHGRVKGRRRKLTEYGIRLMEKQKLKFLYGGI 69 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+F+ F A +S+G+T L+ LE RLD +VYR T ARQFV H H+LVNG Sbjct: 70 REKQFKKYFDMASKSKGNTGQVLLQLLERRLDNVVYRLGIACTRRQARQFVAHGHILVNG 129 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS 184 + VNI SY + GDVIEVK S+ + ++E + R VP ++ ++ +N + P Sbjct: 130 KKVNIPSYLVEPGDVIEVKPSSRDIPQIIENLENMDPRSVPPWLELDKENFRGKVLDYP- 188 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 KD+ + + V+EFYSR Sbjct: 189 --KDIQLEIPINLQYVIEFYSR 208 >gi|313206370|ref|YP_004045547.1| SSU ribosomal protein s4p [Riemerella anatipestifer DSM 15868] gi|312445686|gb|ADQ82041.1| SSU ribosomal protein S4P [Riemerella anatipestifer DSM 15868] gi|315023689|gb|EFT36693.1| 30S ribosomal protein S4 [Riemerella anatipestifer RA-YM] gi|325336184|gb|ADZ12458.1| Ribosomal protein S4 related protein [Riemerella anatipestifer RA-GD] Length = 202 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI R+ G ++G K+ R+ PG HG +RR +K S + +QL KQK Sbjct: 1 MARYIGPKTKIARKFGAAIYGDDKNFEKRRNQPPGQHGPNKRRGAKKSEYAVQLAEKQKA 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F ++FK+A S+G T L+ ESRLD +VYR F T AARQ V+H Sbjct: 61 KYTYG-ILERQFSNLFKKAHASKGVTGEVLLQLCESRLDNVVYRLGFAKTRAAARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RH+ VNG VNI SY K GD + V+QKSK L V+E + L+ + +++ N + T Sbjct: 120 RHITVNGEVVNIPSYSLKPGDKVAVRQKSKSL-EVIETA-LSAKANYDWLQFNDETKEGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV +P ++ P ++ L+VE YS+ Sbjct: 178 FVGVPERIQ---IPEDIKEQLIVELYSK 202 >gi|320547679|ref|ZP_08041964.1| 30S ribosomal protein S4 [Streptococcus equinus ATCC 9812] gi|320447754|gb|EFW88512.1| 30S ribosomal protein S4 [Streptococcus equinus ATCC 9812] Length = 203 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VE+Y++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEYYNK 201 >gi|149926591|ref|ZP_01914851.1| 30S ribosomal protein S4 [Limnobacter sp. MED105] gi|149824520|gb|EDM83736.1| 30S ribosomal protein S4 [Limnobacter sp. MED105] Length = 207 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKCKLSRREGTDLSLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGQQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA R +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFAEASRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG++VNI SY K DVI +++KSK A ++E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGKAVNIPSYSVKLNDVISIREKSKTQARIVESVTLAEQMGFPLWVNVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +F +P D+ + +L+VE YSR Sbjct: 177 KKLEGSFKSVPER-ADLSQEI--NESLIVELYSR 207 >gi|171778571|ref|ZP_02919698.1| hypothetical protein STRINF_00550 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282794|gb|EDT48218.1| hypothetical protein STRINF_00550 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 203 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGSGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VE+Y++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEYYNK 201 >gi|253701896|ref|YP_003023085.1| 30S ribosomal protein S4 [Geobacter sp. M21] gi|259495281|sp|C6E4N1|RS4_GEOSM RecName: Full=30S ribosomal protein S4 gi|251776746|gb|ACT19327.1| ribosomal protein S4 [Geobacter sp. M21] Length = 208 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + RSY PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGR-IKVSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD + YR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR VNI S + K GDV+++++KS+++A++ E+ + + R +P+++ + D Sbjct: 119 LVRHGHFTLNGRKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P +D+ P+ Q L+VE YS+ Sbjct: 179 AFKGTVKAMPVR-EDITMPI--QEQLIVELYSK 208 >gi|303237525|ref|ZP_07324090.1| ribosomal protein S4 [Prevotella disiens FB035-09AN] gi|302482345|gb|EFL45375.1| ribosomal protein S4 [Prevotella disiens FB035-09AN] Length = 202 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F A ++ G T L+ LESRLD +VYR PT AARQ VNH+H Sbjct: 60 TYG-VLERQFRNMFDRAAKASGITGEVLLQNLESRLDNVVYRLGLAPTRAAARQLVNHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 ++VNG VNI SY K GD++ V++K+K L V+EA+ LA + +Y I + ++ Sbjct: 119 IVVNGGVVNIASYAVKAGDIVGVREKAKSL-EVIEAA-LAGFNHSKYPWIEWDENSKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P+ +D+P + Q L+VE YS+ Sbjct: 177 FLHQPAR-EDIPENIKEQ--LIVELYSK 201 >gi|296268580|ref|YP_003651212.1| 30S ribosomal protein S4 [Thermobispora bispora DSM 43833] gi|296091367|gb|ADG87319.1| ribosomal protein S4 [Thermobispora bispora DSM 43833] Length = 208 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 112/185 (60%), Gaps = 8/185 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ R Y PG HG R + K S + LQLR KQK ++ YG + EK+F ++EA R G Sbjct: 30 KCPIEIRPYPPGEHG-RGRPKESEYQLQLREKQKTRRIYG-VLEKQFHRYYEEASRRPGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LESRLD +VYRA F + AARQ V H H LVNGR VNI SYR +E DVIEV Sbjct: 88 TGENLLQILESRLDNVVYRAGFAESRDAARQQVRHGHFLVNGRKVNIPSYRVREHDVIEV 147 Query: 144 KQKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++ + L V A+ +E+ +P ++ V+ ++M ++P+ + ++Q L+V Sbjct: 148 RENKRHLMPYEVARATH-SEKKIPAWLGVSTEHMRILVHQLPTRQQ---IDTLVQEQLIV 203 Query: 202 EFYSR 206 E YS+ Sbjct: 204 ELYSK 208 >gi|310765574|gb|ADP10524.1| 30S ribosomal protein S4 [Erwinia sp. Ejp617] Length = 202 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKSIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR V+I SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M F RI Sbjct: 122 NGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKMEGVFKRI 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + +L+VE YS+ Sbjct: 182 PER---TDLSADINEHLIVELYSK 202 >gi|251787995|ref|YP_003002716.1| 30S ribosomal protein S4 [Dickeya zeae Ech1591] gi|247536616|gb|ACT05237.1| ribosomal protein S4 [Dickeya zeae Ech1591] Length = 206 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|88812733|ref|ZP_01127979.1| 30S ribosomal protein S4 [Nitrococcus mobilis Nb-231] gi|88789971|gb|EAR21092.1| 30S ribosomal protein S4 [Nitrococcus mobilis Nb-231] Length = 206 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + + P++ + PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYTGPTCKLARREGTDLFLKSRVRPLDNKCKLDTPPGQHGQRR-GRISDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR +KEADR +G+T L+ LESRLD VYR F T ARQ V Sbjct: 60 KVRRTYG-VLERQFRKYYKEADRRKGNTGETLLQLLESRLDNTVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 NHR +LVNGR NI S GD++ VK+K+K+ V A ++A++ +P ++ V+ Sbjct: 119 NHRAILVNGRVSNISSRILNPGDLVSVKEKAKKQLRVQAALEMAQQIGLPAWVEVDTKQF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRMPDR-SDLSADI--NEHLIVELYSK 206 >gi|27468314|ref|NP_764951.1| 30S ribosomal protein S4 [Staphylococcus epidermidis ATCC 12228] gi|57867241|ref|YP_188856.1| 30S ribosomal protein S4 [Staphylococcus epidermidis RP62A] gi|251811109|ref|ZP_04825582.1| 30S ribosomal protein S4 [Staphylococcus epidermidis BCM-HMP0060] gi|282875859|ref|ZP_06284726.1| ribosomal protein S4 [Staphylococcus epidermidis SK135] gi|293366334|ref|ZP_06613014.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W2(grey)] gi|38258357|sp|Q8CS54|RS4_STAES RecName: Full=30S ribosomal protein S4 gi|81674196|sp|Q5HNI5|RS4_STAEQ RecName: Full=30S ribosomal protein S4 gi|27315860|gb|AAO04995.1|AE016748_229 30S ribosomal protein S4 [Staphylococcus epidermidis ATCC 12228] gi|57637899|gb|AAW54687.1| ribosomal protein S4 [Staphylococcus epidermidis RP62A] gi|251805329|gb|EES57986.1| 30S ribosomal protein S4 [Staphylococcus epidermidis BCM-HMP0060] gi|281294884|gb|EFA87411.1| ribosomal protein S4 [Staphylococcus epidermidis SK135] gi|291319572|gb|EFE59938.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W2(grey)] gi|329727885|gb|EGG64335.1| ribosomal protein S4 [Staphylococcus epidermidis VCU144] gi|329737374|gb|EGG73628.1| ribosomal protein S4 [Staphylococcus epidermidis VCU028] gi|329737515|gb|EGG73768.1| ribosomal protein S4 [Staphylococcus epidermidis VCU045] Length = 200 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + DN+ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLDIIKESVEI-NNFVPEYLDFDADNLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|255536129|ref|YP_003096500.1| 30S ribosomal protein S4 [Flavobacteriaceae bacterium 3519-10] gi|255342325|gb|ACU08438.1| SSU ribosomal protein S4p (S9e) [Flavobacteriaceae bacterium 3519-10] Length = 202 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI R+ G ++G K+ ++ PG HG +RR SK S + +QL KQK Sbjct: 1 MARYIGPKTKIARKFGAAIYGDDKNFEKRKNQPPGQHGVNKRRGSKKSEYAVQLMEKQKA 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F +++++A R++G T L+ ESRLD +VYR F T ARQ V+H Sbjct: 61 KYTYG-ILERQFANLYEKAQRAKGVTGEVLLQLCESRLDNVVYRLGFGKTRAGARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RHV VNG VNI SY K GDVI +++KSK L + A LA + E++ N + T Sbjct: 120 RHVTVNGELVNIPSYLLKAGDVIAIREKSKSLEVI--ADSLAGKANYEWLQFNDEKKEGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV P ++ P ++ L+VE YS+ Sbjct: 178 FVSAPERIQ---IPEDIKEQLIVELYSK 202 >gi|120553676|ref|YP_958027.1| ribosomal protein S4 [Marinobacter aquaeolei VT8] gi|152060959|sp|A1TYM1|RS4_MARAV RecName: Full=30S ribosomal protein S4 gi|120323525|gb|ABM17840.1| SSU ribosomal protein S4P [Marinobacter aquaeolei VT8] Length = 206 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 122/212 (57%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + S N + PG+HG RR + S +G+QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIET-PPGMHGARR-GRLSEYGVQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T ARQ Sbjct: 59 QKVRRIYG-VLEKQFRNYYKEAARGKGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDN 174 V+H+ VLVN + VNI SY+ K GDV+ V++K+K V A LA P ++ V+ + Sbjct: 118 VSHKAVLVNDKPVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASSRAPVSWVEVDANK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + +P + P + NL+VE YS+ Sbjct: 178 MSGVYKSVPERTE---LPADINENLIVELYSK 206 >gi|16762867|ref|NP_458484.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144354|ref|NP_807696.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027591|ref|ZP_03342038.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052884|ref|ZP_03345762.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425775|ref|ZP_03358525.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580697|ref|ZP_03362523.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612395|ref|ZP_03370221.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647330|ref|ZP_03377383.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824201|ref|ZP_06543796.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25009212|sp|Q8Z1X4|RS4_SALTI RecName: Full=30S ribosomal protein S4 gi|25294504|pir||AI1008 30S ribosomal chain protein S4 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505174|emb|CAD09170.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhi] gi|29139992|gb|AAO71556.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTR---SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ R P D+ + +L+VE YS+ Sbjct: 179 EGTYKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|325843404|ref|ZP_08167962.1| ribosomal protein S4 [Turicibacter sp. HGF1] gi|325489326|gb|EGC91700.1| ribosomal protein S4 [Turicibacter sp. HGF1] Length = 199 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G ++ K + R Y PG HGQ RK K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGYSILENGKE-LQKRPYAPGQHGQSRK-KISEYGLQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR + +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 59 AYG-MTERQFRRTYDKAGKLAGKHGENFLYMLESRLDNLVYRLGLAATRRQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K G I +++KS LA V++AS A P++++ + M T+V Sbjct: 118 ITVDGKRVDIPSYSVKPGQTISLREKSANLA-VVKASLEATIHRPDFVTFDEATMTGTYV 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + NL+VEFYSR Sbjct: 177 RLPERSEVF---ADIHENLIVEFYSR 199 >gi|317049816|ref|YP_004117464.1| 30S ribosomal protein S4 [Pantoea sp. At-9b] gi|316951433|gb|ADU70908.1| ribosomal protein S4 [Pantoea sp. At-9b] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGGQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKSILVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|154508868|ref|ZP_02044510.1| hypothetical protein ACTODO_01379 [Actinomyces odontolyticus ATCC 17982] gi|293192678|ref|ZP_06609632.1| ribosomal protein S4 [Actinomyces odontolyticus F0309] gi|153798502|gb|EDN80922.1| hypothetical protein ACTODO_01379 [Actinomyces odontolyticus ATCC 17982] gi|292820185|gb|EFF79182.1| ribosomal protein S4 [Actinomyces odontolyticus F0309] Length = 207 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ + S + ++L+ KQ+++ YG I E + R F+EA R+ G T NL+ Sbjct: 31 RPYGPGEHGRTRRRQDSDYAVRLKEKQRLRAQYG-IRESQLRRAFEEARRTAGLTGENLV 89 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD++V RA F TI ARQFV HRH+LV+G+ V+ S+R K G ++VK KS+ Sbjct: 90 ELLEMRLDSLVLRAGFARTIQQARQFVVHRHILVDGKIVDRPSFRVKPGQTLQVKPKSQT 149 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 A++ RD VPEY+ V + AT VR P K PV + +VVE YS Sbjct: 150 TVPFEIAAEGIHRDVLPAVPEYLDVELSRLKATLVRRP---KRAEVPVTVDVQMVVEHYS 206 Query: 206 R 206 R Sbjct: 207 R 207 >gi|242237883|ref|YP_002986064.1| 30S ribosomal protein S4 [Dickeya dadantii Ech703] gi|242129940|gb|ACS84242.1| ribosomal protein S4 [Dickeya dadantii Ech703] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 GHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|187925591|ref|YP_001897233.1| 30S ribosomal protein S4 [Burkholderia phytofirmans PsJN] gi|226697818|sp|B2T726|RS4_BURPP RecName: Full=30S ribosomal protein S4 gi|187716785|gb|ACD18009.1| ribosomal protein S4 [Burkholderia phytofirmans PsJN] Length = 207 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 123/207 (59%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++VNG NI S + K GDV+ V++ K+ A +LEA LAE+ +P +++V+ TF Sbjct: 124 IVVNGVVSNIPSMQVKAGDVVAVRETKKKQARILEALSLAEQGGMPSWVAVDSKKFEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+ + +L+VE YSR Sbjct: 184 KQKPER-SDIAGDI--NESLIVELYSR 207 >gi|167587747|ref|ZP_02380135.1| 30S ribosomal protein S4 [Burkholderia ubonensis Bu] Length = 207 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ + +++V+ Sbjct: 117 QLVSHKAITVNGIVANVPSQQVKAGDVIAIREKAKKQARIVEALSLAEQGGLASWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQMPER-ADIAGDI--NESLIVELYSR 207 >gi|327395480|dbj|BAK12902.1| 30S ribosomal protein S4 RpsD [Pantoea ananatis AJ13355] Length = 176 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 6/175 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG HG R K + S +G QLR KQK+++ YG + E++FR+ +KEA R +G+T NL++ L Sbjct: 7 APGQHGAR-KPRLSDYGGQLREKQKVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALL 64 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +VYR F T ARQ V+H+ VLVNGR VNI SY+ DV+ +++K+K+ + Sbjct: 65 EGRLDNVVYRMGFGATRAEARQLVSHKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSR 124 Query: 153 VLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V A +LAE R+ P ++ V+ M F RIP + +L+VE YS+ Sbjct: 125 VKAALELAEQREKPTWLEVDAAKMEGVFKRIPER---TDLSADINEHLIVELYSK 176 >gi|296163296|ref|ZP_06846057.1| ribosomal protein S4 [Burkholderia sp. Ch1-1] gi|295886435|gb|EFG66292.1| ribosomal protein S4 [Burkholderia sp. Ch1-1] Length = 207 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ V+++ K+ A +LEA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER-SDIAGDI--NESLIVELYSR 207 >gi|242242984|ref|ZP_04797429.1| 30S ribosomal protein S4 [Staphylococcus epidermidis W23144] gi|242233585|gb|EES35897.1| 30S ribosomal protein S4 [Staphylococcus epidermidis W23144] gi|319401032|gb|EFV89251.1| ribosomal protein S4 [Staphylococcus epidermidis FRI909] Length = 200 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + DN+ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQDLDIIKESVEI-NNFVPEYLDFDADNLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|53720796|ref|YP_109782.1| 30S ribosomal protein S4 [Burkholderia pseudomallei K96243] gi|53723829|ref|YP_104141.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 23344] gi|67640848|ref|ZP_00439641.1| 30S ribosomal protein S4 [Burkholderia mallei GB8 horse 4] gi|76811379|ref|YP_335115.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710b] gi|121601043|ref|YP_994431.1| 30S ribosomal protein S4 [Burkholderia mallei SAVP1] gi|124384949|ref|YP_001027920.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10229] gi|126439277|ref|YP_001060725.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 668] gi|126448998|ref|YP_001083015.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10247] gi|134283223|ref|ZP_01769924.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 305] gi|167001674|ref|ZP_02267466.1| 30S ribosomal protein S4 [Burkholderia mallei PRL-20] gi|167721552|ref|ZP_02404788.1| 30S ribosomal protein S4 [Burkholderia pseudomallei DM98] gi|167740526|ref|ZP_02413300.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 14] gi|167817731|ref|ZP_02449411.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 91] gi|167826128|ref|ZP_02457599.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 9] gi|167896212|ref|ZP_02483614.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 7894] gi|167904594|ref|ZP_02491799.1| 30S ribosomal protein S4 [Burkholderia pseudomallei NCTC 13177] gi|167912859|ref|ZP_02499950.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 112] gi|167920818|ref|ZP_02507909.1| 30S ribosomal protein S4 [Burkholderia pseudomallei BCC215] gi|226198240|ref|ZP_03793811.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pakistan 9] gi|237814120|ref|YP_002898571.1| ribosomal protein S4 [Burkholderia pseudomallei MSHR346] gi|254175265|ref|ZP_04881926.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 10399] gi|254180364|ref|ZP_04886962.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1655] gi|254190327|ref|ZP_04896835.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pasteur 52237] gi|254198547|ref|ZP_04904968.1| 30S ribosomal protein S4 [Burkholderia pseudomallei S13] gi|254201214|ref|ZP_04907578.1| 30S ribosomal protein S4 [Burkholderia mallei FMH] gi|254206555|ref|ZP_04912906.1| 30S ribosomal protein S4 [Burkholderia mallei JHU] gi|254260076|ref|ZP_04951130.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710a] gi|254300601|ref|ZP_04968046.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 406e] gi|61215450|sp|Q62GN0|RS4_BURMA RecName: Full=30S ribosomal protein S4 gi|61215463|sp|Q63Q36|RS4_BURPS RecName: Full=30S ribosomal protein S4 gi|90101678|sp|Q3JMT8|RS4_BURP1 RecName: Full=30S ribosomal protein S4 gi|171769469|sp|A1V878|RS4_BURMS RecName: Full=30S ribosomal protein S4 gi|171769829|sp|A2S7K1|RS4_BURM9 RecName: Full=30S ribosomal protein S4 gi|171855085|sp|A3MRX9|RS4_BURM7 RecName: Full=30S ribosomal protein S4 gi|171855116|sp|A3NEF4|RS4_BURP6 RecName: Full=30S ribosomal protein S4 gi|52211210|emb|CAH37199.1| 30S ribosomal protein S4 [Burkholderia pseudomallei K96243] gi|52427252|gb|AAU47845.1| ribosomal protein S4 [Burkholderia mallei ATCC 23344] gi|76580832|gb|ABA50307.1| ribosomal protein S4 [Burkholderia pseudomallei 1710b] gi|121229853|gb|ABM52371.1| 30S ribosomal protein S4 [Burkholderia mallei SAVP1] gi|124292969|gb|ABN02238.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10229] gi|126218770|gb|ABN82276.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 668] gi|126241868|gb|ABO04961.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10247] gi|134245418|gb|EBA45511.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 305] gi|147747108|gb|EDK54184.1| 30S ribosomal protein S4 [Burkholderia mallei FMH] gi|147752097|gb|EDK59163.1| 30S ribosomal protein S4 [Burkholderia mallei JHU] gi|157810528|gb|EDO87698.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 406e] gi|157938003|gb|EDO93673.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pasteur 52237] gi|160696310|gb|EDP86280.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 10399] gi|169655287|gb|EDS87980.1| 30S ribosomal protein S4 [Burkholderia pseudomallei S13] gi|184210903|gb|EDU07946.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1655] gi|225929760|gb|EEH25776.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pakistan 9] gi|237504346|gb|ACQ96664.1| ribosomal protein S4 [Burkholderia pseudomallei MSHR346] gi|238521643|gb|EEP85093.1| 30S ribosomal protein S4 [Burkholderia mallei GB8 horse 4] gi|243062571|gb|EES44757.1| 30S ribosomal protein S4 [Burkholderia mallei PRL-20] gi|254218765|gb|EET08149.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710a] Length = 207 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|253566696|ref|ZP_04844149.1| 30S ribosomal protein S4 [Bacteroides sp. 3_2_5] gi|251944868|gb|EES85343.1| 30S ribosomal protein S4 [Bacteroides sp. 3_2_5] Length = 201 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD IV+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQMLEGRLDNIVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G+ VNI SY K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGQVVNIPSYVVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDEASKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|229817706|ref|ZP_04447988.1| hypothetical protein BIFANG_02978 [Bifidobacterium angulatum DSM 20098] gi|229785495|gb|EEP21609.1| hypothetical protein BIFANG_02978 [Bifidobacterium angulatum DSM 20098] Length = 208 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G +SEK+ R+++++ ++ G T + ++ LE RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-LSEKQLRAVYEKGTKTSGQTGNAMLQDLEVRLDNLVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G VN SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVNRPSYRVKPGQTIQVKAKSQTMEPFQAAAEGVHRDVLPPVPGYLDVNLASLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + ++VP V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEVPAQVNIQ--YVVEFYAR 208 >gi|16766705|ref|NP_462320.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415335|ref|YP_152410.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181921|ref|YP_218338.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161506031|ref|YP_001573143.1| 30S ribosomal protein S4 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|168264703|ref|ZP_02686676.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468027|ref|ZP_02701864.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194445278|ref|YP_002042667.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447938|ref|YP_002047440.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472917|ref|ZP_03078901.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734012|ref|YP_002116359.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247634|ref|YP_002148336.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262156|ref|ZP_03162230.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244329|ref|YP_002217379.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387686|ref|ZP_03214298.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931411|ref|ZP_03222080.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354956|ref|YP_002228757.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858658|ref|YP_002245309.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913869|ref|ZP_04657706.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|3914907|sp|O54297|RS4_SALTY RecName: Full=30S ribosomal protein S4 gi|62287196|sp|Q5PK09|RS4_SALPA RecName: Full=30S ribosomal protein S4 gi|75505522|sp|Q57J55|RS4_SALCH RecName: Full=30S ribosomal protein S4 gi|189045396|sp|A9MN71|RS4_SALAR RecName: Full=30S ribosomal protein S4 gi|226695074|sp|B4TXB9|RS4_SALSV RecName: Full=30S ribosomal protein S4 gi|226699114|sp|B5F7S2|RS4_SALA4 RecName: Full=30S ribosomal protein S4 gi|226699115|sp|B5FJJ1|RS4_SALDC RecName: Full=30S ribosomal protein S4 gi|226699116|sp|B5R1F3|RS4_SALEP RecName: Full=30S ribosomal protein S4 gi|226699117|sp|B5RH39|RS4_SALG2 RecName: Full=30S ribosomal protein S4 gi|226699118|sp|B4TJY6|RS4_SALHS RecName: Full=30S ribosomal protein S4 gi|226699119|sp|B4SUR7|RS4_SALNS RecName: Full=30S ribosomal protein S4 gi|2780215|emb|CAA11203.1| ribosomal protein S4 [Salmonella typhimurium] gi|16421972|gb|AAL22279.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129592|gb|AAV79098.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129554|gb|AAX67257.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160867378|gb|ABX24001.1| hypothetical protein SARI_04212 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194403941|gb|ACF64163.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406242|gb|ACF66461.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459281|gb|EDX48120.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709514|gb|ACF88735.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628917|gb|EDX48327.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211337|gb|ACH48734.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240411|gb|EDY23031.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938845|gb|ACH76178.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604784|gb|EDZ03329.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319839|gb|EDZ05049.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274737|emb|CAR39793.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205346870|gb|EDZ33501.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710461|emb|CAR34819.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248573|emb|CBG26411.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995625|gb|ACY90510.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159959|emb|CBW19478.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914439|dbj|BAJ38413.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087861|emb|CBY97624.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322615043|gb|EFY11967.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617330|gb|EFY14231.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625552|gb|EFY22377.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626394|gb|EFY23203.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632094|gb|EFY28847.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635027|gb|EFY31750.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643272|gb|EFY39839.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646644|gb|EFY43151.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649990|gb|EFY46409.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652707|gb|EFY49047.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659536|gb|EFY55780.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665522|gb|EFY61709.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670416|gb|EFY66555.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670489|gb|EFY66623.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675065|gb|EFY71148.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681602|gb|EFY77631.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685946|gb|EFY81935.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716407|gb|EFZ07978.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131774|gb|ADX19204.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195816|gb|EFZ80989.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196428|gb|EFZ81579.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202333|gb|EFZ87378.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207318|gb|EFZ92268.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211246|gb|EFZ96091.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216045|gb|EGA00776.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223464|gb|EGA07792.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226806|gb|EGA10996.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231832|gb|EGA15942.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233215|gb|EGA17310.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237282|gb|EGA21347.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245517|gb|EGA29516.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249023|gb|EGA32945.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250646|gb|EGA34527.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256875|gb|EGA40589.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263024|gb|EGA46571.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266024|gb|EGA49519.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272781|gb|EGA56184.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625160|gb|EGE31505.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630105|gb|EGE36448.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ R P D+ + +L+VE YS+ Sbjct: 179 EGTYKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|260770937|ref|ZP_05879866.1| SSU ribosomal protein S4p (S9e) [Vibrio furnissii CIP 102972] gi|260614174|gb|EEX39364.1| SSU ribosomal protein S4p (S9e) [Vibrio furnissii CIP 102972] Length = 188 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 113/175 (64%), Gaps = 6/175 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG+HG RR + S +G+QLR KQK+++ YG + EK+FR+ +KEA R +G+T NL+ L Sbjct: 19 APGVHGARR-GRLSEYGVQLREKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +VYR F T ARQ V+H+ +LVNG+ VN+ S+ DV+ +++K+K+ + Sbjct: 77 EGRLDNVVYRMGFGATRAEARQLVSHKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSR 136 Query: 153 VLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A ++AE R+ P +I V+ +M TF R+P D+ + Q L+VE YS+ Sbjct: 137 IKAALEVAEQREKPTWIEVDASSMEGTFKRLPER-SDLSADINEQ--LIVELYSK 188 >gi|329298510|ref|ZP_08255846.1| 30S ribosomal protein S4 [Plautia stali symbiont] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGGQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKSVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|218131301|ref|ZP_03460105.1| hypothetical protein BACEGG_02912 [Bacteroides eggerthii DSM 20697] gi|317476331|ref|ZP_07935580.1| ribosomal protein S4 [Bacteroides eggerthii 1_2_48FAA] gi|217986518|gb|EEC52854.1| hypothetical protein BACEGG_02912 [Bacteroides eggerthii DSM 20697] gi|316907357|gb|EFV29062.1| ribosomal protein S4 [Bacteroides eggerthii 1_2_48FAA] Length = 201 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VNI SY K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNAKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|284006139|emb|CBA71381.1| 30S ribosomal protein S4 [Arsenophonus nasoniae] Length = 206 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEATRLKGNTGENLLNLLEGRLDNTVYRMGFGATRAEARQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNG+ VNI SY+ DVI V++K+K+ + + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGQVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPSWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---ADLSADINEHLIVELYSK 206 >gi|288906416|ref|YP_003431638.1| Ribosomal protein S4 [Streptococcus gallolyticus UCN34] gi|306832453|ref|ZP_07465605.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979478|ref|YP_004289194.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733142|emb|CBI14723.1| Ribosomal protein S4 [Streptococcus gallolyticus UCN34] gi|304425353|gb|EFM28473.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179406|emb|CBZ49450.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGHPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VE+Y++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEYYNK 201 >gi|239917776|ref|YP_002957334.1| SSU ribosomal protein S4P [Micrococcus luteus NCTC 2665] gi|281413731|ref|ZP_06245473.1| 30S ribosomal protein S4 [Micrococcus luteus NCTC 2665] gi|259495286|sp|C5CCG8|RS4_MICLC RecName: Full=30S ribosomal protein S4 gi|239838983|gb|ACS30780.1| SSU ribosomal protein S4P [Micrococcus luteus NCTC 2665] Length = 208 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/210 (36%), Positives = 122/210 (58%), Gaps = 10/210 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + R + +H R +G L + + + R YGPG HG+ R+ + S + ++L+ KQ+++ Sbjct: 5 LRTRRTVRH--SRALGIALTPKAEKYMERRPYGPGQHGRARRKQDSDYAVRLKEKQRLRA 62 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +I E + R F+EA R+ G T NL+ LE RLD +V RA F TI ARQ V HRH Sbjct: 63 QY-NIREAQMRRYFEEAKRTAGLTGENLVELLEQRLDALVLRAGFARTIQQARQLVVHRH 121 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMV 176 ++V+G+ V++ S+R KEG +I V ++S+++ A+ A + V P Y++V + + Sbjct: 122 IMVDGKRVDVPSFRVKEGQMIHVHERSEKMVPFQLAAAGAHQQVLPATPGYLTVEIEKLR 181 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT R P K PV + LVVE+Y+R Sbjct: 182 ATLTRRP---KRSEVPVTCEEQLVVEYYAR 208 >gi|127511116|ref|YP_001092313.1| 30S ribosomal protein S4 [Shewanella loihica PV-4] gi|152112260|sp|A3Q9A6|RS4_SHELP RecName: Full=30S ribosomal protein S4 gi|126636411|gb|ABO22054.1| SSU ribosomal protein S4P [Shewanella loihica PV-4] Length = 206 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 129/213 (60%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT------RSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ KS V PG HG R K++ S +G+QLR Sbjct: 1 MARYLGPKLKLTRREGTDLF--LKSGVRAIDSKCKLEAAPGQHGAR-KARLSEYGVQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T ARQ Sbjct: 58 KQKVRRTYG-VLEKQFRNYYKDAARLKGNTGENLLTLLETRLDNVVYRMGFGATRAEARQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI S++ DVI V++KS++ A + A ++A +R+ P ++ V+ Sbjct: 117 LVSHKSIMVNGRVVNIPSFKVSANDVISVREKSQKQARIKAALEVASQREKPTWVEVDAA 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 177 KMEGAFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|332181992|gb|AEE17680.1| ribosomal protein S4 [Treponema brennaborense DSM 12168] Length = 211 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 111/184 (60%), Gaps = 3/184 (1%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+N + PG + R K S +G+QLR KQKMK+ YG + EK+F F+ A R G Sbjct: 30 KCPINKKRGAPGKDPKARTGKKSEYGVQLREKQKMKRIYG-MLEKQFHLTFEHAQRMPGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NLI LESRLD +V+R F + ARQ V H H+LVNG+SVNI SY + GDV+EV Sbjct: 89 TGDNLICLLESRLDNVVFRMHFASSRTQARQLVLHGHILVNGKSVNIPSYEVRPGDVVEV 148 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+ SK+L +L+A ++++ V +I+++ D + P ++ + I + LVVE Sbjct: 149 KENSKKLTVILDALKEVSKSGVMPWINLDVDAQKGVYTAKPRRVEVIDLADIKE-QLVVE 207 Query: 203 FYSR 206 YS+ Sbjct: 208 LYSK 211 >gi|322412877|gb|EFY03785.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323128282|gb|ADX25579.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 203 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEAGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|313836059|gb|EFS73773.1| ribosomal protein S4 [Propionibacterium acnes HL037PA2] gi|314929595|gb|EFS93426.1| ribosomal protein S4 [Propionibacterium acnes HL044PA1] gi|314970518|gb|EFT14616.1| ribosomal protein S4 [Propionibacterium acnes HL037PA3] gi|328906196|gb|EGG25971.1| 30S ribosomal protein S4 [Propionibacterium sp. P08] Length = 201 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RGRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RD+P ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLHPIVVARETFETRDIPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + + + + +VE YS+ Sbjct: 178 HQLPTRDQII---IDVNEQAIVELYSK 201 >gi|197364265|ref|YP_002143902.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|226695073|sp|B5BGW2|RS4_SALPK RecName: Full=30S ribosomal protein S4 gi|197095742|emb|CAR61312.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 206 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQISPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ R P D+ + +L+VE YS+ Sbjct: 179 EGTYKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|119946251|ref|YP_943931.1| ribosomal protein S4 [Psychromonas ingrahamii 37] gi|152060918|sp|A1SXW7|RS4A_PSYIN RecName: Full=30S ribosomal protein S4 A gi|119864855|gb|ABM04332.1| SSU ribosomal protein S4P [Psychromonas ingrahamii 37] Length = 206 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG+HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDN---APGVHGAR-KPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KE+ R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKESARLQGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VLVNG+ VNI S+ K DVI +++K+K+ + + A ++A +R+VP ++SV+ Sbjct: 116 QLVSHKAVLVNGKVVNIPSFNVKASDVIAIREKAKKQSRIGAALEIAGQREVPTWVSVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + Q L++E YS+ Sbjct: 176 TKMEGVFTRQPER-SDLSAEINEQ--LIIELYSK 206 >gi|289550525|ref|YP_003471429.1| SSU ribosomal protein S4p (S9e) [Staphylococcus lugdunensis HKU09-01] gi|315658019|ref|ZP_07910892.1| 30S ribosomal protein S4 [Staphylococcus lugdunensis M23590] gi|289180057|gb|ADC87302.1| SSU ribosomal protein S4p (S9e) [Staphylococcus lugdunensis HKU09-01] gi|315496909|gb|EFU85231.1| 30S ribosomal protein S4 [Staphylococcus lugdunensis M23590] Length = 200 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +G+QLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGMQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFDIAAKQYGVHGENFMILLASRLDAVVYALGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+GR V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + DN+ TFV Sbjct: 119 IEVDGRRVDIPSYSLKPGQVITVREKSQNLDIIKESVEI-NNFVPEYLDFDADNLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|62184658|ref|YP_219443.1| 30S ribosomal protein S4 [Chlamydophila abortus S26/3] gi|81313156|sp|Q5L799|RS4_CHLAB RecName: Full=30S ribosomal protein S4 gi|62147725|emb|CAH63469.1| putative 30s ribosomal protein s4 [Chlamydophila abortus S26/3] Length = 209 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRSRNPLFKKPHPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ FKE +G + + E RLD +VYR F TIFAA+Q V H H Sbjct: 60 CYGMILEKQLVKAFKEVVNKQGSVTKMFLERFECRLDNMVYRMGFAKTIFAAQQLVAHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VLVNG+ V+ S+ + G + +++KS++L SV E+ + E P YISV+ N Sbjct: 120 VLVNGKKVDRRSFFLRPGMQVSLREKSRKLQSVKESLENKDESSFPSYISVDKSNFKGEL 179 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYS 205 + P + + P+ + ++V EF S Sbjct: 180 LISPEQDQIEAQLPLPVDVSVVCEFLS 206 >gi|161616441|ref|YP_001590406.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224585211|ref|YP_002639010.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|161365805|gb|ABX69573.1| hypothetical protein SPAB_04256 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224469739|gb|ACN47569.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|321226467|gb|EFX51517.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 202 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M T+ R Sbjct: 122 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTYKRK 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 182 PER-SDLSADI--NEHLIVELYSK 202 >gi|70726207|ref|YP_253121.1| 30S ribosomal protein S4 [Staphylococcus haemolyticus JCSC1435] gi|82581621|sp|Q4L760|RS4_STAHJ RecName: Full=30S ribosomal protein S4 gi|68446931|dbj|BAE04515.1| 30S ribosomal protein S4 [Staphylococcus haemolyticus JCSC1435] Length = 200 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFDIAGKQHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+GR V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 VEVDGRRVDIPSYSLKPGQVITVREKSQNLDIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|325981829|ref|YP_004294231.1| 30S ribosomal protein S4 [Nitrosomonas sp. AL212] gi|325531348|gb|ADZ26069.1| ribosomal protein S4 [Nitrosomonas sp. AL212] Length = 208 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K K K RR GE L+ + K + R+Y PG HGQ+ K + S +G QLR Sbjct: 1 MAKNLEPKCKQCRREGEKLFLKGGKCFTDKCAIERRNYPPGQHGQK-KGRTSDYGGQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FR+I+K AD+ RG T NL+ LE RLD + + F + ARQ Sbjct: 60 KQKIRRIYG-ILEKQFRNIYKVADKQRGITGDNLLQLLEGRLDNVAFHMGFGASRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +L+NG VNI SYR K GD +EV +K+K+ + A ++A R+ +I V+ Sbjct: 119 IVRHNGILINGSRVNIPSYRVKAGDTVEVAEKAKEQLRIKNALEMANNRNFATWIEVDTK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F P P + +L+VE YS+ Sbjct: 179 AMKGIFKTKPER---SDLPATINESLIVELYSK 208 >gi|167564391|ref|ZP_02357307.1| 30S ribosomal protein S4 [Burkholderia oklahomensis EO147] gi|167571538|ref|ZP_02364412.1| 30S ribosomal protein S4 [Burkholderia oklahomensis C6786] Length = 207 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + +NG N+ S + K GDVI +++K+K+ A ++EA LAE+ + +++V+ Sbjct: 117 QLVSHKAITLNGVVANVPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGLASWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|224827041|ref|ZP_03700138.1| ribosomal protein S4 [Lutiella nitroferrum 2002] gi|224600707|gb|EEG06893.1| ribosomal protein S4 [Lutiella nitroferrum 2002] Length = 206 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 110/174 (63%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R KS+ S +G+QLR KQK+++ YG + E++FR+ F EA R +G T NL+ LE Sbjct: 38 PGQHGAR-KSRLSDYGVQLREKQKIRRIYG-VLERQFRNYFAEASRLKGSTGENLLKLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T ARQ V+H+ ++VNG+ VNI S++ K GDV+ +++K+K+ A + Sbjct: 96 SRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVAIREKAKKQARI 155 Query: 154 LEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E LAE+ P ++SV+ M F P + + LVVEFYS+ Sbjct: 156 VEGLALAEQGGFPSWVSVDPKKMEGVFKSAPERSE---LAGDINEQLVVEFYSK 206 >gi|227495469|ref|ZP_03925785.1| ribosomal protein S4 [Actinomyces coleocanis DSM 15436] gi|226831016|gb|EEH63399.1| ribosomal protein S4 [Actinomyces coleocanis DSM 15436] Length = 206 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R + ++ R +G L + R Y PG HG+ R+ + S + ++L+ KQ+++ Sbjct: 1 MANRSRRQVRLSRALGIALTPKAARYFERRPYAPGQHGRARRRQESDYAVRLKEKQRLRA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E + R F+EA R+ G T NL+ LE RLD +V R+ F TI ARQ V HRH Sbjct: 61 QYG-IREAQMRRAFEEALRAEGKTGSNLVELLEMRLDALVLRSGFARTIAQARQVVVHRH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMV 176 +LV+G+ V+ S+R K G I+VK KS+ A+ RD VP Y+ V + + Sbjct: 120 ILVDGQIVDRPSFRVKPGQTIQVKPKSQTTVPFEIAAAGVHRDVLAPVPAYLDVELERLR 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT VR P + PV+ LVVE+YSR Sbjct: 180 ATLVRRPERAE---VPVVCDDQLVVEYYSR 206 >gi|225016258|ref|ZP_03705450.1| hypothetical protein CLOSTMETH_00161 [Clostridium methylpentosum DSM 5476] gi|224950933|gb|EEG32142.1| hypothetical protein CLOSTMETH_00161 [Clostridium methylpentosum DSM 5476] Length = 208 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/215 (40%), Positives = 123/215 (57%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G+ L+ + K V+ RSY PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGAVCRLCRREGKKLFLKGERCFSDKCSVSLRSYAPGQHGQSRK-KVSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ K+YY ++SE +F F+ A+R G T NL+ LESRLD IVYRA F + ARQ Sbjct: 60 KQMAKRYY-NVSENQFYKYFEMAERKPGMTGENLLKILESRLDNIVYRAGFASSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H +NG+ VNI S K GDVIEV + S+ ++ +V+E + R VP ++ VN Sbjct: 119 LVLHNHFRLNGKKVNICSLLVKPGDVIEVTEASRSNDKMKAVVET--WSARPVPMWMDVN 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D M R P+ ++ V +L+VE YS+ Sbjct: 177 KDGMTVKMDRYPNR-DEIDLEV--AEHLIVELYSK 208 >gi|24380465|ref|NP_722420.1| 30S ribosomal protein S4 [Streptococcus mutans UA159] gi|290581395|ref|YP_003485787.1| 30S ribosomal protein S4 [Streptococcus mutans NN2025] gi|26399366|sp|P59133|RS4_STRMU RecName: Full=30S ribosomal protein S4 gi|24378494|gb|AAN59726.1|AE015034_7 30S ribosomal protein S4 [Streptococcus mutans UA159] gi|254998294|dbj|BAH88895.1| 30S ribosomal protein S4 [Streptococcus mutans NN2025] Length = 203 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKKSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G +N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKGGILGYNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + + P ++S + D + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-SVVGRPAFVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|119947102|ref|YP_944782.1| ribosomal protein S4 [Psychromonas ingrahamii 37] gi|152060920|sp|A1T0B8|RS4B_PSYIN RecName: Full=30S ribosomal protein S4 B gi|119865706|gb|ABM05183.1| SSU ribosomal protein S4P [Psychromonas ingrahamii 37] Length = 206 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG+HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDN---APGVHGAR-KPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KE+ R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKESARLQGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VLVNG+ VNI S+ K DVI +++K+K+ + + A ++A +R+VP ++SV+ Sbjct: 116 QLVSHKAVLVNGKVVNIPSFNVKASDVIAIREKAKKQSRIGAALEIAGQREVPTWVSVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + Q L++E YS+ Sbjct: 176 TKMEGIFTRQPER-SDLSAEINEQ--LIIELYSK 206 >gi|319946013|ref|ZP_08020262.1| 30S ribosomal protein S4 [Streptococcus australis ATCC 700641] gi|322390490|ref|ZP_08064008.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 903] gi|319747821|gb|EFW00066.1| 30S ribosomal protein S4 [Streptococcus australis ATCC 700641] gi|321142764|gb|EFX38224.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 903] Length = 203 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTVGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|23334986|ref|ZP_00120224.1| COG0522: Ribosomal protein S4 and related proteins [Bifidobacterium longum DJO10A] gi|23465460|ref|NP_696063.1| 30S ribosomal protein S4 [Bifidobacterium longum NCC2705] gi|189439486|ref|YP_001954567.1| 30S ribosomal protein S4 [Bifidobacterium longum DJO10A] gi|213692483|ref|YP_002323069.1| RNA-binding S4 domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227545937|ref|ZP_03975986.1| ribosomal protein S4 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622015|ref|ZP_04665046.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454013|ref|YP_003661156.1| RNA-binding S4 domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|312132891|ref|YP_004000230.1| rpsd [Bifidobacterium longum subsp. longum BBMN68] gi|317482221|ref|ZP_07941243.1| ribosomal protein S4 [Bifidobacterium sp. 12_1_47BFAA] gi|322688955|ref|YP_004208689.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. infantis 157F] gi|322690924|ref|YP_004220494.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. longum JCM 1217] gi|26399353|sp|P59127|RS4_BIFLO RecName: Full=30S ribosomal protein S4 gi|226697806|sp|B3DSF0|RS4_BIFLD RecName: Full=30S ribosomal protein S4 gi|254764570|sp|B7GSB1|RS4_BIFLI RecName: Full=30S ribosomal protein S4 gi|23326113|gb|AAN24699.1| 30S ribosomal protein S4 [Bifidobacterium longum NCC2705] gi|189427921|gb|ACD98069.1| Ribosomal protein S4 [Bifidobacterium longum DJO10A] gi|213523944|gb|ACJ52691.1| RNA-binding S4 domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227213571|gb|EEI81420.1| ribosomal protein S4 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515206|gb|EEQ55073.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517007|emb|CBK70623.1| SSU ribosomal protein S4P [Bifidobacterium longum subsp. longum F8] gi|296183444|gb|ADH00326.1| RNA-binding S4 domain protein [Bifidobacterium longum subsp. longum JDM301] gi|311773864|gb|ADQ03352.1| RpsD [Bifidobacterium longum subsp. longum BBMN68] gi|316916359|gb|EFV37759.1| ribosomal protein S4 [Bifidobacterium sp. 12_1_47BFAA] gi|320455780|dbj|BAJ66402.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. longum JCM 1217] gi|320458628|dbj|BAJ69249.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460291|dbj|BAJ70911.1| 30S ribosomal protein S4 [Bifidobacterium longum subsp. infantis 157F] Length = 208 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 124/208 (59%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + +++R KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRDRRRTESDYAVRMREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++A R+ G T + +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKATRTAGQTGNAMLTDLETRLDNLVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKAKSQTMVPFQIAAEGVHRDVLPAVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++++P V +Q VVEFY+R Sbjct: 184 VTRKP-EVEEIPVQVNIQ--YVVEFYAR 208 >gi|284040595|ref|YP_003390525.1| ribosomal protein S4 [Spirosoma linguale DSM 74] gi|283819888|gb|ADB41726.1| ribosomal protein S4 [Spirosoma linguale DSM 74] Length = 201 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE + G P + ++YGPG+HG+ RK K S + LQL KQK+K Sbjct: 1 MARYTGPKAKISRKFGEPIMG-PSKALQKKNYGPGMHGRGRKRKQSEYALQLLEKQKVKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR++F A G T NL+ E+RLD VYR + AARQ V+H+H Sbjct: 60 TYG-ILERQFRALFHRAQVREGITGENLLKLCEARLDNTVYRLGIASSRRAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 ++V+G VNI SY K G +I V++KSK L +V +S L+ R+ Y V D +V Sbjct: 119 IIVDGEVVNIPSYSLKPGQLIGVREKSKSLEAV--SSSLSARNTKRYNWVEWDGQQLVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P +D P +VE YS+ Sbjct: 177 FISYPE--RD-QIPENFNEQAIVELYSK 201 >gi|226942802|ref|YP_002797875.1| 30S ribosomal protein S4 [Azotobacter vinelandii DJ] gi|259495268|sp|C1DKN7|RS4_AZOVD RecName: Full=30S ribosomal protein S4 gi|226717729|gb|ACO76900.1| 30S ribosomal protein S4 [Azotobacter vinelandii DJ] Length = 206 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 126/212 (59%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N S PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGSRALESKCNVES-APGIHGQRR-GRLSEYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +KEA R +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKEASRRKGSTGENLLQLLECRLDNVVYRMGFGATRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 ++H+ + VNG++VNI SY+ K GDV+ +++K+K + +A +L A+R E++ V+ + Sbjct: 118 ISHKAITVNGQTVNIPSYQVKVGDVVAIREKAKNQLRIAQALELCAQRGRVEWVEVDTEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKSVPAR-SDLSADI--NENLIVELYSK 206 >gi|94312223|ref|YP_585433.1| 30S ribosomal protein S4 [Cupriavidus metallidurans CH34] gi|152112253|sp|Q1LI62|RS4_RALME RecName: Full=30S ribosomal protein S4 gi|93356075|gb|ABF10164.1| 30S ribosomal subunit protein S4 [Cupriavidus metallidurans CH34] Length = 207 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 124/207 (59%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVNG ++N+ S + K GD++ V+++SK+ + EA LAE+ P +++V+ T+ Sbjct: 124 ILVNGETLNVPSAQIKSGDIVSVREQSKKQVRIAEALSLAEQSGFPTWVAVDAKKFEGTY 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+ + +L+VE YSR Sbjct: 184 KQAPDR-ADISGDI--NESLIVELYSR 207 >gi|170695706|ref|ZP_02886848.1| ribosomal protein S4 [Burkholderia graminis C4D1M] gi|170139311|gb|EDT07497.1| ribosomal protein S4 [Burkholderia graminis C4D1M] Length = 207 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 122/207 (58%), Gaps = 15/207 (7%) Query: 8 KHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR KQK+K+ Sbjct: 8 KAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLREKQKVKR 64 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ V+H+ Sbjct: 65 IYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKA 123 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG NI S + K GDV+ V+++ K+ A +LEA LAE+ +P +++V+ TF Sbjct: 124 ITVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGMPSWVAVDSKKFEGTF 183 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YSR Sbjct: 184 KSKPER-SDIAGDI--NESLIVELYSR 207 >gi|332107892|gb|EGJ09116.1| 30S ribosomal protein S4 [Rubrivivax benzoatilyticus JA2] Length = 207 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYG--------PGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L+ + RS G PG HG+ S+ S +G+QL Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSAR----RSIGDKAKFDSKPGQHGRTSGSRTSDYGVQL 56 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+K+ YG + E++FR F EA+R +G+T NL++ LESRLD +VYR F T + Sbjct: 57 REKQKVKRMYG-VLERQFRRYFAEAERRKGNTGSNLLALLESRLDNVVYRMGFGSTRAES 115 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN 171 RQ V+H+ + VNG+ VNI SY K GDV+ V++K+K V +A +LA+ E++ V+ Sbjct: 116 RQLVSHKAITVNGQVVNIPSYMVKAGDVVAVREKAKNQLRVQDALKLAQTIGQCEWVQVD 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F ++P +D + ++ L+VE YSR Sbjct: 176 ATKMEGVFKKVPD--RD-QFGAEIKEALIVELYSR 207 >gi|290477169|ref|YP_003470084.1| 30S ribosomal subunit protein S4 [Xenorhabdus bovienii SS-2004] gi|289176517|emb|CBJ83326.1| 30S ribosomal subunit protein S4 [Xenorhabdus bovienii SS-2004] Length = 206 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRTYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAESRQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNG VNI SY+ DV+ V++K+K+ A + A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGCVVNIASYQVSPNDVVSVREKAKKQARIKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|330684381|gb|EGG96107.1| ribosomal protein S4 [Staphylococcus epidermidis VCU121] Length = 200 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAAKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+GR V+I SY K G I V++KS++L + E+ ++ VPEY++ + D++ TFV Sbjct: 119 IEVDGRRVDIPSYSLKPGQEIAVREKSQKLNIITESVEI-NNFVPEYLNFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|329770399|ref|ZP_08261781.1| 30S ribosomal protein S4 [Gemella sanguinis M325] gi|328836522|gb|EGF86182.1| 30S ribosomal protein S4 [Gemella sanguinis M325] Length = 200 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGANFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G V+ V++KS+ L + EA ++ VPEY++ + D + + V Sbjct: 119 ILVDGKKVDIASYAVKPGQVVSVREKSRNLDIIKEAVEITNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +P I + L+VE+YSR Sbjct: 178 RFPE--RSELHPEINE-QLIVEYYSR 200 >gi|157960037|ref|YP_001500071.1| 30S ribosomal protein S4 [Shewanella pealeana ATCC 700345] gi|167626016|ref|YP_001676310.1| 30S ribosomal protein S4 [Shewanella halifaxensis HAW-EB4] gi|212634853|ref|YP_002311378.1| 30S ribosomal protein S4 [Shewanella piezotolerans WP3] gi|189045398|sp|B0TLY9|RS4_SHEHH RecName: Full=30S ribosomal protein S4 gi|189045399|sp|A8GYZ9|RS4_SHEPA RecName: Full=30S ribosomal protein S4 gi|226695075|sp|B8CNF7|RS4_SHEPW RecName: Full=30S ribosomal protein S4 gi|157845037|gb|ABV85536.1| ribosomal protein S4 [Shewanella pealeana ATCC 700345] gi|167356038|gb|ABZ78651.1| ribosomal protein S4 [Shewanella halifaxensis HAW-EB4] gi|212556337|gb|ACJ28791.1| Ribosomal protein S4 [Shewanella piezotolerans WP3] Length = 206 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 130/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DV+ V++KS+ A + A ++ A+R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSANDVVSVREKSRTQARIKAALEVSAQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP D+ + Q L+VE YS+ Sbjct: 176 TKMEGAFKRIPER-SDLSAEINEQ--LIVELYSK 206 >gi|325280942|ref|YP_004253484.1| ribosomal protein S4 [Odoribacter splanchnicus DSM 20712] gi|324312751|gb|ADY33304.1| ribosomal protein S4 [Odoribacter splanchnicus DSM 20712] Length = 202 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G P + R+Y G HG RR+ K S +G+QL+ KQK K Sbjct: 1 MARYTGPKSKIARKFGEPIYG-PDKALERRNYPSGQHGLARRRRKISEYGVQLKEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR +F++A+R+ G T L+ LE RLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-LLEKQFRILFEKAERAGGVTGEVLLQMLECRLDNVVYRLGIAPTRAAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD--NMVA 177 H+ VNG NI S K GDV+ V++KSK L V A L V +Y + D +M Sbjct: 119 HITVNGGVCNIPSAAVKAGDVVAVREKSKALEVV--ADSLRSNRVSKYSWLEWDGASMSG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + Q L+VE YS+ Sbjct: 177 KLLNVPER-SDIPENIKEQ--LIVELYSK 202 >gi|313887983|ref|ZP_07821661.1| ribosomal protein S4 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845938|gb|EFR33321.1| ribosomal protein S4 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 198 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 123/206 (59%), Gaps = 10/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K K RR+G N+ G PK+ + + G R K + +G QL KQ+++ Sbjct: 1 MAKMMDPKFKQSRRLGLNVCGHPKA-MKRATRGTA----RSDKKLTEYGKQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F ++FKEA R++G T NL++FLE+RLD++ YR F +I ARQ V+H H Sbjct: 56 YYG-VLEKQFVNLFKEAQRTQGQTGPNLVTFLETRLDSLCYRMGFASSIRQARQMVSHCH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SYRC+ GDVI + K +++ E YIS + D AT V Sbjct: 115 LTVNGKKVNIPSYRCQAGDVIALSAKGRKVDLFKENYNTNIVVNYPYISKDED-FKATLV 173 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +D+ P+ ++ L+VEFYS+ Sbjct: 174 SLPNR-EDI--PIEIEDQLIVEFYSK 196 >gi|284988799|ref|YP_003407353.1| 30S ribosomal protein S4 [Geodermatophilus obscurus DSM 43160] gi|284062044|gb|ADB72982.1| ribosomal protein S4 [Geodermatophilus obscurus DSM 43160] Length = 200 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 114/199 (57%), Gaps = 5/199 (2%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K +I R +G L + R Y PG HG++R+ K S + +LR KQ+++ Y DISE Sbjct: 7 KVRISRALGIPLTPKAVEYFERRPYPPGEHGRKRR-KDSDYSTRLREKQRLRAQY-DISE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R+ F A R+ G T LI LESRLD V RA F T++ ARQFV H+HVLVNG+ Sbjct: 65 TQLRAAFDRARRTGGKTGEALIQDLESRLDATVLRAGFARTVYQARQFVTHQHVLVNGKR 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 V+ SYR K GD +++ +KS+ + A+ A P Y+ V ++VA R+P + Sbjct: 125 VDRPSYRLKPGDFVQIAEKSRTKEPFVVAASGAHATPPAYLEVCLADLVARVERVPDRDE 184 Query: 188 DVPYPVIMQPNLVVEFYSR 206 PV+ + LVVE YSR Sbjct: 185 ---VPVVCEEQLVVEHYSR 200 >gi|222153933|ref|YP_002563110.1| 30S ribosomal protein S4 [Streptococcus uberis 0140J] gi|254764614|sp|B9DWC7|RS4_STRU0 RecName: Full=30S ribosomal protein S4 gi|222114746|emb|CAR43894.1| 30S ribosomal protein S4 [Streptococcus uberis 0140J] Length = 203 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMILLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|315646149|ref|ZP_07899269.1| ribosomal protein S4 [Paenibacillus vortex V453] gi|315278348|gb|EFU41664.1| ribosomal protein S4 [Paenibacillus vortex V453] Length = 200 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/210 (38%), Positives = 125/210 (59%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K + R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKE-LAKRPFPPGQHGPNQRRKVSNYGMQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F+++F +A +G N + LESRLD +VYR F + ARQ V H H Sbjct: 60 MYG-LGEKQFKTLFNKATSMKGIAGENFMFLLESRLDNLVYRLGFSNSRAGARQLVAHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG+ V+I SY GDVI ++++S+ L+S+ EA LA R +P YI ++ +M + Sbjct: 119 VTVNGKKVDIASYAVSTGDVIGLRERSRSLSSIKEA--LANRVHLPAYIELDEASMEGKY 176 Query: 180 VRIP--SSL-KDVPYPVIMQPNLVVEFYSR 206 +R+P S L +D+ +VEFY+R Sbjct: 177 IRLPERSELSQDI------DEKQIVEFYNR 200 >gi|89093591|ref|ZP_01166539.1| 30S ribosomal protein S4 [Oceanospirillum sp. MED92] gi|89082281|gb|EAR61505.1| 30S ribosomal protein S4 [Oceanospirillum sp. MED92] Length = 206 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT------RSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ KS V PG+HG RR + S +GLQLR Sbjct: 1 MARYLGPKCKLSRREGTDLF--LKSGVRALDSKCKAETVPGVHGARR-GRLSDYGLQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FRS +KEA R G T NL+ LE RLD +VYR F T ARQ Sbjct: 58 KQKVRRMYG-VLERQFRSYYKEAARRSGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+HR + VNG+ VNI SY+ K GDV+ V++K+K + A +LA +R E++ V+ Sbjct: 117 IVSHRSITVNGQVVNIASYQVKAGDVVAVREKAKTQLRIKNALELAGQRAAVEWVEVDAG 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M T+ P D+ + Q L+VE YS+ Sbjct: 177 KMEGTYKATPER-SDLSADINEQ--LIVELYSK 206 >gi|153805982|ref|ZP_01958650.1| hypothetical protein BACCAC_00227 [Bacteroides caccae ATCC 43185] gi|149130659|gb|EDM21865.1| hypothetical protein BACCAC_00227 [Bacteroides caccae ATCC 43185] Length = 201 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G VNI SY K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGEVVNIPSYAVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDEASKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 MLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|255690029|ref|ZP_05413704.1| ribosomal protein S4 [Bacteroides finegoldii DSM 17565] gi|260624636|gb|EEX47507.1| ribosomal protein S4 [Bacteroides finegoldii DSM 17565] Length = 201 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G VNI SY K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGEVVNIPSYAVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDEASKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 MLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|189465443|ref|ZP_03014228.1| hypothetical protein BACINT_01796 [Bacteroides intestinalis DSM 17393] gi|224537842|ref|ZP_03678381.1| hypothetical protein BACCELL_02729 [Bacteroides cellulosilyticus DSM 14838] gi|189437717|gb|EDV06702.1| hypothetical protein BACINT_01796 [Bacteroides intestinalis DSM 17393] gi|224520528|gb|EEF89633.1| hypothetical protein BACCELL_02729 [Bacteroides cellulosilyticus DSM 14838] Length = 201 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VNI S+ K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVDGEVVNIPSFAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +L+VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHLIVELYSK 201 >gi|24371853|ref|NP_715895.1| 30S ribosomal protein S4 [Shewanella oneidensis MR-1] gi|113968568|ref|YP_732361.1| 30S ribosomal protein S4 [Shewanella sp. MR-4] gi|114045731|ref|YP_736281.1| 30S ribosomal protein S4 [Shewanella sp. MR-7] gi|26399362|sp|P59131|RS4_SHEON RecName: Full=30S ribosomal protein S4 gi|123030061|sp|Q0HNR3|RS4_SHESM RecName: Full=30S ribosomal protein S4 gi|123326989|sp|Q0I081|RS4_SHESR RecName: Full=30S ribosomal protein S4 gi|24345670|gb|AAN53340.1|AE015474_3 ribosomal protein S4 [Shewanella oneidensis MR-1] gi|113883252|gb|ABI37304.1| SSU ribosomal protein S4P [Shewanella sp. MR-4] gi|113887173|gb|ABI41224.1| SSU ribosomal protein S4P [Shewanella sp. MR-7] Length = 206 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT------RSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ KS V PG HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIDSKCKLESAPGQHGAR-KPRLSEYGLQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T +RQ Sbjct: 58 KQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 117 LVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDSA 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP D+ + Q L+VE YS+ Sbjct: 177 KMEGAFKRIPER-SDLSAEINEQ--LIVELYSK 206 >gi|329956728|ref|ZP_08297301.1| ribosomal protein S4 [Bacteroides clarus YIT 12056] gi|328524100|gb|EGF51176.1| ribosomal protein S4 [Bacteroides clarus YIT 12056] Length = 201 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VN+ SY K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVDGEVVNVPSYAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNAKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|314982287|gb|EFT26380.1| ribosomal protein S4 [Propionibacterium acnes HL110PA3] Length = 201 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RGRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQKVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|167764347|ref|ZP_02436472.1| hypothetical protein BACSTE_02731 [Bacteroides stercoris ATCC 43183] gi|167697752|gb|EDS14331.1| hypothetical protein BACSTE_02731 [Bacteroides stercoris ATCC 43183] Length = 201 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G VNI SY K G VI V+++SK L + A+ LA + +Y + D+ V Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDDNAKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +L+VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHLIVELYSK 201 >gi|253997477|ref|YP_003049541.1| 30S ribosomal protein S4 [Methylotenera mobilis JLW8] gi|253984156|gb|ACT49014.1| ribosomal protein S4 [Methylotenera mobilis JLW8] Length = 205 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ + K+ R +G +L G + + R PG HG + + + S FG++L KQK++ Sbjct: 1 MSRFIGPRLKVMRALGIDLPGLSRKTIEARPTPPGQHGNKASRKRRSDFGVKLLEKQKIR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E + R + +A + + T L+ LE R+D +V+RA F PT+ AARQ V+H Sbjct: 61 FNYG-LTETQMRRLILDARKGKEPTGERLLQLLERRMDNVVFRAGFAPTVIAARQLVSHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+++NG+ NI S R GD I +K KSK + V+E + + PE+++ D +A Sbjct: 120 HLMLNGKPANIPSIRLNVGDEISIKAKSKNIPMVVETIKQPALERPEWLAWEADKQLAKV 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +P ++ DVP+PV +Q LVVE+Y+ Sbjct: 180 AHLP-AITDVPFPVDVQ--LVVEYYA 202 >gi|119502947|ref|ZP_01625032.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2080] gi|119461293|gb|EAW42383.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2080] Length = 206 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 126/213 (59%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT------RSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L + KS V + PG HG RR + S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDL--QLKSGVRSLDSKCKAETAPGQHGARR-GRLSDYGVQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T +RQ Sbjct: 58 KQKVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRAESRQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V+H+ +LVNG VNI SY+ + GD++ V++K+K+ + A +AE R +I VN + Sbjct: 117 LVSHKGILVNGTVVNIPSYQVRPGDIVSVREKAKKQLRIQAAMSIAEQRGEQVWIEVNSE 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P +D+P + NL+VE YS+ Sbjct: 177 KLEGTFKSKPER-QDLPSEI--NENLIVELYSK 206 >gi|51245003|ref|YP_064887.1| 30S ribosomal protein S4 [Desulfotalea psychrophila LSv54] gi|61215518|sp|Q6AP44|RS4_DESPS RecName: Full=30S ribosomal protein S4 gi|50876040|emb|CAG35880.1| probable 30S ribosomal protein S4 [Desulfotalea psychrophila LSv54] Length = 210 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R++ PG HGQ R K S + +QLR KQK+K YG + E +FR F++A+ +G Sbjct: 30 KCSFERRAFAPGQHGQARFKKVSDYAVQLREKQKVKSMYG-VLEAQFRLTFEKAEAQKGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 NL+ LE RLD V+RA F + ARQ V H+H+L+NG+ V+I SY+ EGDVI + Sbjct: 89 AGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQVSEGDVISL 148 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ A V++ + R VP ++ ++ DN A+ +P+ +++ P+ Q L+VE Sbjct: 149 REKSRANAGVVDNLEAVVRRGVPTWLELDKDNFKASVKALPNR-EEITMPI--QERLIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|125975412|ref|YP_001039322.1| SSU ribosomal protein S4P [Clostridium thermocellum ATCC 27405] gi|256005301|ref|ZP_05430267.1| ribosomal protein S4 [Clostridium thermocellum DSM 2360] gi|281419374|ref|ZP_06250389.1| ribosomal protein S4 [Clostridium thermocellum JW20] gi|152060944|sp|A3DJK0|RS4_CLOTH RecName: Full=30S ribosomal protein S4 gi|125715637|gb|ABN54129.1| SSU ribosomal protein S4P [Clostridium thermocellum ATCC 27405] gi|255990737|gb|EEU00853.1| ribosomal protein S4 [Clostridium thermocellum DSM 2360] gi|281406994|gb|EFB37257.1| ribosomal protein S4 [Clostridium thermocellum JW20] gi|316939528|gb|ADU73562.1| ribosomal protein S4 [Clostridium thermocellum DSM 1313] Length = 208 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K + R Y PG HGQ +K K S +GLQLR Sbjct: 1 MARYTGASCRLCRREGEKLYLKGERCTTNKCAIARRGYAPGQHGQNKK-KLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG I E +FR F+ A + +G T NL+ LESRLD +VYR + ARQ Sbjct: 60 KQKARRYYG-ILEGQFRRYFEMAVKKKGITGENLLQILESRLDNVVYRMGLAVSRREARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNG+ V+I SY K GDVI VK+KSK + + A R P+++ + + Sbjct: 119 LVRHGHFTVNGKRVDIPSYLVKVGDVIAVKEKSKSSPKMQSNKEYAAGRPRPKWLEYDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M V +P+ +D+ P+ + NL+VE YS+ Sbjct: 179 EMSGKVVALPAR-EDIDLPI--RENLIVELYSK 208 >gi|325577150|ref|ZP_08147634.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae ATCC 33392] gi|325160732|gb|EGC72853.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae ATCC 33392] Length = 206 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|308048015|ref|YP_003911581.1| 30S ribosomal protein S4P [Ferrimonas balearica DSM 9799] gi|307630205|gb|ADN74507.1| SSU ribosomal protein S4P [Ferrimonas balearica DSM 9799] Length = 206 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RR ++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTV---PGQHGARR-ARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LESRLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLESRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ + VNGR VNI S+ DVI V++K+++ A + A ++AE R+ P ++ V+ Sbjct: 116 QLVSHKAIKVNGRVVNIPSFSVSPNDVIAVREKAQKQARIKGALEVAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGTFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|42524353|ref|NP_969733.1| 30S ribosomal protein S4 [Bdellovibrio bacteriovorus HD100] gi|61215581|sp|Q6MJ35|RS4A_BDEBA RecName: Full=30S ribosomal protein S4 A gi|39576562|emb|CAE80726.1| 30S ribosomal protein S4 [Bdellovibrio bacteriovorus HD100] Length = 208 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R Y PG HGQ R K S F LQLR KQK K+YYG +SEK+F EA+R++ Sbjct: 30 KCSFERRPYPPGQHGQSR-LKFSEFALQLREKQKAKRYYG-VSEKQFVKYVGEANRAKEL 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T H L+ FLE+RLD +VY + + ARQ V H H L+NG+ NI S +GDVI+V Sbjct: 88 TGHALLKFLETRLDNVVYTLGYANSRREARQLVKHNHFLLNGKRANIPSILVNKGDVIQV 147 Query: 144 KQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + S+++A + A Q +A R VP ++ +H T +P+ +DV V ++ N++VE Sbjct: 148 AESSREMAKIQSAIQAVARRSVPAWLEADHAKFTGTVKDLPNR-EDV--AVAVEENMIVE 204 Query: 203 FYSR 206 +YSR Sbjct: 205 YYSR 208 >gi|237806899|ref|YP_002891339.1| 30S ribosomal protein S4 [Tolumonas auensis DSM 9187] gi|259495302|sp|C4L7V4|RS4_TOLAT RecName: Full=30S ribosomal protein S4 gi|237499160|gb|ACQ91753.1| ribosomal protein S4 [Tolumonas auensis DSM 9187] Length = 206 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I EK+FR+ ++EA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILEKQFRNYYREATRLKGNTGENLLQLLEGRLDNVVYRMGFATTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI S + DV+ V++K+K+ A + A L A+R+ P +I +N Sbjct: 116 QLVSHKAIVVNGKVVNIPSSQVSPEDVVTVREKAKKQARIKAALDLAAQREKPTWIEINA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D M + R+P D+ + Q L+VE YS+ Sbjct: 176 DKMEGVYKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|212716064|ref|ZP_03324192.1| hypothetical protein BIFCAT_00977 [Bifidobacterium catenulatum DSM 16992] gi|212661431|gb|EEB22006.1| hypothetical protein BIFCAT_00977 [Bifidobacterium catenulatum DSM 16992] Length = 208 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T + +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGQTGNAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNVVDRPSYRVKPGQTIQVKAKSQTMVPFQAAAEGVHRDVLPAVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +++P V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEIPVQVNIQ--YVVEFYAR 208 >gi|169335656|ref|ZP_02862849.1| hypothetical protein ANASTE_02076 [Anaerofustis stercorihominis DSM 17244] gi|169258394|gb|EDS72360.1| hypothetical protein ANASTE_02076 [Anaerofustis stercorihominis DSM 17244] Length = 208 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR E L+ + K N R PG HG + SK S +G+QLR Sbjct: 1 MARYTEASCRLCRRENEKLFLKGSRCYSDKCAFNRRPTAPGQHGSK-GSKMSEYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F +A+R G NLIS LESRLD +VYR F + ARQ Sbjct: 60 KQKVKRIYG-VLEKQFRLYFDKAERKPGAAGENLISLLESRLDNVVYRMGFASSRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHD 173 V H H LV+G+ VNI S+ KEG VI+VK S++ + E +++ E VP Y V+ + Sbjct: 119 LVRHNHFLVDGKKVNIPSFSVKEGQVIKVKDDSRKSSKFKEIAEMNETKVPAAYTQVDME 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + P+ D+ P+ + +L+VE YS+ Sbjct: 179 KMEGKMIAAPTKA-DIEIPI--EDHLIVELYSK 208 >gi|237747389|ref|ZP_04577869.1| small subunit ribosomal protein S4 [Oxalobacter formigenes HOxBLS] gi|229378740|gb|EEO28831.1| small subunit ribosomal protein S4 [Oxalobacter formigenes HOxBLS] Length = 207 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 9/204 (4%) Query: 8 KHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + + ++++ PG HG + ++ S +G QLR KQK+K+ YG Sbjct: 8 KAKLSRREGTDLFLKSARRSLDSKCKLDVKPGQHGMKSGARTSDYGNQLREKQKVKRMYG 67 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I EK+FR F EA+R +G+T NL+ LESRLD +VYR F T +RQ V+H+ ++V Sbjct: 68 -ILEKQFRRYFAEAERRKGNTGDNLMQLLESRLDNVVYRMGFGSTRAESRQLVSHQALMV 126 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG+ VNI SY K DVI +++K+K+ ++E+ LAE+ + +++SV+ M F R+ Sbjct: 127 NGKVVNIPSYLVKPEDVITIREKAKKQNRIVESLSLAEQIGLADWVSVDSKKMEGVFKRV 186 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + + +L++E YSR Sbjct: 187 PDR---SEFANDVNESLIIELYSR 207 >gi|188535254|ref|YP_001909051.1| 30S ribosomal protein S4 [Erwinia tasmaniensis Et1/99] gi|300718681|ref|YP_003743484.1| 30S ribosomal protein S4 [Erwinia billingiae Eb661] gi|226699063|sp|B2VK72|RS4_ERWT9 RecName: Full=30S ribosomal protein S4 gi|188030296|emb|CAO98185.1| 30S ribosomal protein S4 [Erwinia tasmaniensis Et1/99] gi|299064517|emb|CAX61637.1| 30S ribosomal protein S4 [Erwinia billingiae Eb661] Length = 206 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRTYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|15603256|ref|NP_246330.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida str. Pm70] gi|26399488|sp|Q9CL53|RS4_PASMU RecName: Full=30S ribosomal protein S4 gi|12721766|gb|AAK03475.1| RpS4 [Pasteurella multocida subsp. multocida str. Pm70] Length = 206 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|50954758|ref|YP_062046.1| 30S ribosomal protein S4 [Leifsonia xyli subsp. xyli str. CTCB07] gi|61215514|sp|Q6AFA4|RS4_LEIXX RecName: Full=30S ribosomal protein S4 gi|50951240|gb|AAT88941.1| 30S ribosomal protein S4 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 115/209 (55%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS R SK + R +G L + + R Y PG HG+ ++ S + ++LR KQ+++ Sbjct: 1 MSSRSRSKTRESRALGIALTPKAARYMEKRPYAPGEHGRTKRKADSDYAVRLREKQRLRA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ R F+EA R++G T NL+ LE RLD +V RA F TI ARQFV HRH Sbjct: 61 QYG-ILEKQLRIAFEEARRTQGLTGENLVEILEMRLDALVLRAGFARTISQARQFVVHRH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMV 176 +LV+G+ V+ S+R K G I VK +S+ A+ DV P Y+SV D + Sbjct: 120 ILVDGKLVDRPSFRVKPGQTIGVKARSEGTEPFQVAAAGGHVDVLPKTPAYLSVELDKLQ 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 A R P K PV + LVVE+Y+ Sbjct: 180 ARLERRP---KRAEVPVTCEVQLVVEYYA 205 >gi|309778473|ref|ZP_07673375.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 3_1_53] gi|308913769|gb|EFP59607.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 3_1_53] Length = 200 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 123/207 (59%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G ++ + R+Y PG HG ++ K + +G QLR KQK++ Sbjct: 1 MSRINGPVWKTSRRLGFSIL-ETGEELQKRAYAPGQHGPTKRVKLTNYGQQLREKQKIRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + F +A + +G T N + LESRLD ++YR F T AARQ VNH H Sbjct: 60 MYG-LNERQFYNTFMKASKMKGVTGDNFLGLLESRLDNLIYRMGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G V+EVK+KSK + ++ EA Q A + ++ V+ D T++ Sbjct: 119 ILVNGKKVDIPSFIAKPGMVVEVKEKSKSMKAINEA-QEATLNTVAFVDVDKDAKKGTYL 177 Query: 181 RIPS-SLKDVPYPVIMQPNLVVEFYSR 206 R+P S + + + LVVEFY+R Sbjct: 178 RLPERSELNAEFNEL----LVVEFYNR 200 >gi|149197866|ref|ZP_01874915.1| 30S ribosomal protein S4 [Lentisphaera araneosa HTCC2155] gi|149139087|gb|EDM27491.1| 30S ribosomal protein S4 [Lentisphaera araneosa HTCC2155] Length = 205 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 114/209 (54%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M K +K KI RR G NL+G K + R PG+HG + K S +G QL KQK Sbjct: 1 MGKYSGNKGKICRRFGVNLFGNMKYDKVLAKRPNPPGVHGANAARKKLSEYGKQLVEKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K YG + EK+FR F A + G T +NL+ LE+RLD +VYR F PT AARQ V Sbjct: 61 LKITYG-LREKQFRITFDRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H H+ +NGR NI SY + GDV+ +K S+ A V A + PE++S+ D + Sbjct: 120 HGHIRINGRRCNIPSYSVRPGDVVSLKDSSRSKALVQRFLDGARGETPEWVSLIKDELKG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +VVE YS+ Sbjct: 180 EIVRLPEREE---IPSVADELMVVELYSK 205 >gi|251793850|ref|YP_003008582.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus NJ8700] gi|247535249|gb|ACS98495.1| ribosomal protein S4 [Aggregatibacter aphrophilus NJ8700] Length = 206 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|291334081|gb|ADD93754.1| ribosomal protein S4 [uncultured marine bacterium MedDCM-OCT-S05-C114] Length = 202 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I+RR G ++ K+ R+Y PG HG + K S +G L KQK++ Sbjct: 1 MSRYTGPTTRINRRFGMAIFPANKA-FERRTYPPGQHGPTYRRKVSDYGEGLLEKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y ++EK+FR++F++A R +G T N ++FLE+RLD +VYR F T AARQ+VNH H Sbjct: 60 LYC-LTEKQFRNLFEKAKRKQGVTGENFLTFLETRLDNVVYRLGFAKTRKAARQYVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLAS-VLEASQLAERDVPEYISVNHDNMVA 177 +LVNG+ V+I S+ GD I V++K S+QLA+ LE +Q P ++ VN D++ Sbjct: 119 ILVNGKKVDIPSFAVSVGDEIGVREKTSSRQLATRNLEGTQY--HPSPPWVDVNADSLQG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R P + ++ + +Q LVVEFYSR Sbjct: 177 TVSRFPQN-DELEQSINVQ--LVVEFYSR 202 >gi|197117349|ref|YP_002137776.1| 30S ribosomal protein S4 [Geobacter bemidjiensis Bem] gi|226699068|sp|B5EFS6|RS4_GEOBB RecName: Full=30S ribosomal protein S4 gi|197086709|gb|ACH37980.1| ribosomal protein S4 [Geobacter bemidjiensis Bem] Length = 208 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + RSY PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGR-IKVSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD + YR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG+ VNI S + K GDV+++++KS+++A++ E+ + + R +P+++ + D Sbjct: 119 LVRHGHFTLNGKKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P +D+ P+ Q L+VE YS+ Sbjct: 179 AFKGTVKAMPVR-EDITMPI--QEQLIVELYSK 208 >gi|222056680|ref|YP_002539042.1| ribosomal protein S4 [Geobacter sp. FRC-32] gi|254764590|sp|B9M6F3|RS4_GEOSF RecName: Full=30S ribosomal protein S4 gi|221565969|gb|ACM21941.1| ribosomal protein S4 [Geobacter sp. FRC-32] Length = 208 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R SK S +G+QLR KQK+++ YG I E +FR F+ ADR +G Sbjct: 30 KCAIKRRNYPPGQHGQGR-SKTSDYGVQLREKQKVRRIYG-ILENQFRGYFERADRLKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD IVYR F + ARQ V H H +NG+ V I S + K GD +E+ Sbjct: 88 TGENLLFLLERRLDNIVYRLGFASSRIEARQLVRHGHFTLNGKKVTIPSIQVKTGDTVEL 147 Query: 144 KQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+++AS+ E+ + + R +P+++ ++ + +P +D+ P+ Q L+VE Sbjct: 148 REKSRKVASINESLEAVVRRGIPQWLELDKGAFKGSVKTLPVR-EDITMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|229916421|ref|YP_002885067.1| ribosomal protein S4 [Exiguobacterium sp. AT1b] gi|259495280|sp|C4L4A0|RS4_EXISA RecName: Full=30S ribosomal protein S4 gi|229467850|gb|ACQ69622.1| ribosomal protein S4 [Exiguobacterium sp. AT1b] Length = 199 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L K + R Y PG HG RK K S + LQL+AKQ ++ Sbjct: 1 MARYTGPAWKLSRRLGISLSETGKE-LAKRPYAPGQHGNGRK-KISEYDLQLQAKQALRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR IF +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 59 MYG-VNEKQFRRIFNDAGKMPGIHGENFMFLLESRLDNLVYRFGLARTRRGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K G VI V++KSK + ++ EA ++A +++S + + + TFV Sbjct: 118 ITVDGSRVDIASYRVKPGQVIAVREKSKNVKAIAEALEVAP-ATKDFVSFDAEKLEGTFV 176 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P + L D ++ L+VE+YSR Sbjct: 177 RLPERAELNDQ-----IKEQLIVEYYSR 199 >gi|260914657|ref|ZP_05921123.1| 30S ribosomal protein S4 [Pasteurella dagmatis ATCC 43325] gi|260631256|gb|EEX49441.1| 30S ribosomal protein S4 [Pasteurella dagmatis ATCC 43325] Length = 206 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRSEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|239637962|ref|ZP_04678923.1| ribosomal protein S4 [Staphylococcus warneri L37603] gi|239596525|gb|EEQ79061.1| ribosomal protein S4 [Staphylococcus warneri L37603] Length = 200 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAAKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+GR V+I SY K G + V++KS++L + E+ ++ VPEY++ + D++ TFV Sbjct: 119 IEVDGRRVDIPSYSLKPGQEVAVREKSQKLNIITESVEI-NNFVPEYLNFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|117918681|ref|YP_867873.1| 30S ribosomal protein S4 [Shewanella sp. ANA-3] gi|152112261|sp|A0KRP8|RS4_SHESA RecName: Full=30S ribosomal protein S4 gi|117611013|gb|ABK46467.1| SSU ribosomal protein S4P [Shewanella sp. ANA-3] Length = 206 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 126/213 (59%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT------RSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ KS V PG HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIDSKCKLESAPGQHGAR-KPRLSEYGLQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T +RQ Sbjct: 58 KQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESRQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H+ ++VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 117 LVSHKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDSA 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP D+ + Q L+VE YS+ Sbjct: 177 KMEGAFKRIPER-SDLSAEINEQ--LIVELYSK 206 >gi|294142909|ref|YP_003558887.1| 30S ribosomal protein S4 [Shewanella violacea DSS12] gi|293329378|dbj|BAJ04109.1| ribosomal protein S4 [Shewanella violacea DSS12] Length = 206 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 130/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG VNI S++ DVI +++KSK+ A + + ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSILVNGSVVNIPSFKVSASDVISIREKSKKQARISASLEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 TKMEGAFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|217424827|ref|ZP_03456324.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 576] gi|217392283|gb|EEC32308.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 576] Length = 207 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + + GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVRAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQVPER-ADIAGDI--NESLIVELYSR 207 >gi|121997625|ref|YP_001002412.1| ribosomal protein S4 [Halorhodospira halophila SL1] gi|152060952|sp|A1WV98|RS4_HALHL RecName: Full=30S ribosomal protein S4 gi|121589030|gb|ABM61610.1| SSU ribosomal protein S4P [Halorhodospira halophila SL1] Length = 207 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 106/174 (60%), Gaps = 5/174 (2%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HGQRR + S +GLQLR KQK+++ YG I E++FR+ +KEA R + T L+ LE Sbjct: 38 PGQHGQRRGGRMSDYGLQLREKQKVRRMYG-IMERQFRNYYKEAARRKAATGTALLQLLE 96 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD + YR F T ARQ VNHR VLVNGR VNI SY+ + GD + VK+K+K + Sbjct: 97 SRLDNVCYRMGFGSTRAEARQLVNHRGVLVNGRVVNIPSYQVQPGDTVSVKEKAKSQLRI 156 Query: 154 LEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +LA+++ ++ V+ M F + P D+ + +L+VE YS+ Sbjct: 157 QAALELAQQNGWASWVDVDATKMEGVFKQAPDR-ADLSQEI--NESLIVELYSK 207 >gi|228474508|ref|ZP_04059241.1| ribosomal protein S4 [Staphylococcus hominis SK119] gi|314936181|ref|ZP_07843528.1| ribosomal protein S4 [Staphylococcus hominis subsp. hominis C80] gi|228271537|gb|EEK12899.1| ribosomal protein S4 [Staphylococcus hominis SK119] gi|313654800|gb|EFS18545.1| ribosomal protein S4 [Staphylococcus hominis subsp. hominis C80] Length = 200 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFDIAGKQHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGKRVDIPSYALKPGQVISVREKSQNLDIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|257459219|ref|ZP_05624338.1| ribosomal protein S4 [Campylobacter gracilis RM3268] gi|257443604|gb|EEV18728.1| ribosomal protein S4 [Campylobacter gracilis RM3268] Length = 208 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L+ + KS + R Y PG HGQRR +K S +G QLR Sbjct: 1 MARYTGPVEKLERRLGVDLFMKGERRLAGKSALLKRPYAPGQHGQRR-AKLSEYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFAEAARREGNTGAILVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LV+G+ V+I SY + G IEV +KSK + A L A+ + ++ V + Sbjct: 119 LVTHGHILVDGKRVDIPSYSVRAGQKIEVIEKSKNNPQISRALDLTAQTGIVAWVDVEKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P ++V PV + +VE YS+ Sbjct: 179 KRYGIFSRVPER-EEVVIPV--EERFIVELYSK 208 >gi|311069452|ref|YP_003974375.1| 30S ribosomal protein S4 [Bacillus atrophaeus 1942] gi|310869969|gb|ADP33444.1| 30S ribosomal protein S4 [Bacillus atrophaeus 1942] Length = 200 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L++RLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAAKLTGKHGENFMILLDARLDNLVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY+ K G I V++KS+ L+ V E+ ++ VPEY++ + + + + Sbjct: 119 ILVDGSRVDIPSYQVKPGQTIGVREKSRNLSIVKESVEV-NNFVPEYLTFDAEKLEGSLT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---INEALIVEFYSR 200 >gi|81428454|ref|YP_395454.1| 30S ribosomal protein S4 [Lactobacillus sakei subsp. sakei 23K] gi|90101691|sp|Q38XD6|RS4_LACSS RecName: Full=30S ribosomal protein S4 gi|78610096|emb|CAI55145.1| 30S Ribosomal protein S4 [Lactobacillus sakei subsp. sakei 23K] Length = 201 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K K+ RR+G +L G K + R Y PG HG R+ K S +G+QL KQK++ Sbjct: 1 MSRYTGPKWKLSRRLGISLSGTGKE-LARRPYAPGQHGNDRRGKISEYGMQLSEKQKLRL 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G NL+ LE RLD IVYR T ARQ VNH Sbjct: 60 MYG-LTERQFRNLFARAGKIREGKHGVNLMILLEQRLDNIVYRLGLASTRAQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV V+G+ V+I SY K G I +++KSK L + +A + P ++ + DN+ + Sbjct: 119 HVTVDGKRVDIPSYEVKPGQEISIREKSKNLVIIKDAIE-GTVGRPSFVEFDADNLKGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + L+VEFY+R Sbjct: 178 VRLPERSELEPE---IDEALIVEFYNR 201 >gi|294790790|ref|ZP_06755948.1| ribosomal protein S4 [Scardovia inopinata F0304] gi|294458687|gb|EFG27040.1| ribosomal protein S4 [Scardovia inopinata F0304] Length = 208 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 123/208 (59%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R YGPG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRARRQVRLSRSLGIALTPKAQRLFEKRPYGPGEHGRDRRRAESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R++++ A R+ G T ++ LE+RLD +V R+ F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAVYERATRAAGQTGTSMQVQLETRLDALVLRSGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ V ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKPKSQTMEPFQAAAEGVHRDVLPQVPGYLDVTLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++++P V +Q VVE+Y+R Sbjct: 184 LTRLP-EVEEIPVQVNIQ--YVVEYYAR 208 >gi|58583182|ref|YP_202198.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625021|ref|YP_452393.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710856|ref|ZP_02242063.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575513|ref|YP_001912442.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae PXO99A] gi|75508108|sp|Q5GWV8|RS4_XANOR RecName: Full=30S ribosomal protein S4 gi|123521160|sp|Q2P008|RS4_XANOM RecName: Full=30S ribosomal protein S4 gi|226732182|sp|B2SQT3|RS4_XANOP RecName: Full=30S ribosomal protein S4 gi|58427776|gb|AAW76813.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368961|dbj|BAE70119.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519965|gb|ACD57910.1| ribosomal protein S4 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 208 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 10/203 (4%) Query: 10 KIDRRIGENL-WGRPKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L P ++++ PG HG RK K S + QLR KQK+K+ YG + Sbjct: 10 KLARREGADLSLKSPARALDSKCKLEQKPGQHGASRKGKLSDYATQLREKQKVKRIYG-L 68 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 E++FR+ +K+A +G+T NL+ LE+RLD + YR F T AARQ V+HR VLVNG Sbjct: 69 LERQFRNYYKKASTKKGNTGENLLQLLETRLDNVCYRMGFAVTRPAARQLVSHRCVLVNG 128 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIP 183 +SVN+ SY+ K GD I + +K+++ V EA +AE+ P ++ V+ F +P Sbjct: 129 KSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVDSKKFSGVFKAVP 188 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 D+P + L+VE YS+ Sbjct: 189 DR-ADLPSDI--NEALIVELYSK 208 >gi|313887042|ref|ZP_07820741.1| ribosomal protein S4 [Porphyromonas asaccharolytica PR426713P-I] gi|312923453|gb|EFR34263.1| ribosomal protein S4 [Porphyromonas asaccharolytica PR426713P-I] gi|332176607|gb|AEE12297.1| ribosomal protein S4 [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE ++G K ++ +SY PG HG R+ K S + LQLR KQ K Sbjct: 1 MARYIGPKSKIARKFGEPIFGADKV-LSKKSYPPGQHGNSRRRKQSEYALQLREKQMAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A RS G T L+ LESRLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLERQFRNLFEKAQRSSGITGEVLLQLLESRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV--AT 178 ++V+G VNI SY K G +I V+++ K + + A LA + +Y + D Sbjct: 119 IVVDGEVVNIPSYTLKPGQIIGVRERDKSMEVI--ADSLAGYNHSKYPWLEWDGRTYSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +++P P+ Q L+VE YS+ Sbjct: 177 LLNVPTR-EEIPEPIKEQ--LIVELYSK 201 >gi|307132815|ref|YP_003884831.1| 30S ribosomal subunit protein S4 [Dickeya dadantii 3937] gi|306530344|gb|ADN00275.1| 30S ribosomal subunit protein S4 [Dickeya dadantii 3937] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|15675914|ref|NP_270088.1| 30S ribosomal protein S4 [Streptococcus pyogenes M1 GAS] gi|19747014|ref|NP_608150.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS8232] gi|21911369|ref|NP_665637.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS315] gi|28896741|ref|NP_803091.1| 30S ribosomal protein S4 [Streptococcus pyogenes SSI-1] gi|50915197|ref|YP_061169.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS10394] gi|71904527|ref|YP_281330.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS6180] gi|71911644|ref|YP_283194.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS5005] gi|94989474|ref|YP_597575.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS9429] gi|94991461|ref|YP_599561.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS10270] gi|94993361|ref|YP_601460.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS2096] gi|139474603|ref|YP_001129319.1| 30S ribosomal protein S4 [Streptococcus pyogenes str. Manfredo] gi|251783531|ref|YP_002997836.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306826445|ref|ZP_07459757.1| 30S ribosomal protein S4 [Streptococcus pyogenes ATCC 10782] gi|54039513|sp|P66568|RS4_STRP3 RecName: Full=30S ribosomal protein S4 gi|54039514|sp|P66569|RS4_STRP8 RecName: Full=30S ribosomal protein S4 gi|54041965|sp|P66567|RS4_STRP1 RecName: Full=30S ribosomal protein S4 gi|61215413|sp|Q5X9C7|RS4_STRP6 RecName: Full=30S ribosomal protein S4 gi|90101729|sp|Q48QN5|RS4_STRPM RecName: Full=30S ribosomal protein S4 gi|152112264|sp|Q1J995|RS4_STRPB RecName: Full=30S ribosomal protein S4 gi|152112265|sp|Q1JJE2|RS4_STRPC RecName: Full=30S ribosomal protein S4 gi|152112266|sp|Q1JEE1|RS4_STRPD RecName: Full=30S ribosomal protein S4 gi|152112268|sp|A2RGZ8|RS4_STRPG RecName: Full=30S ribosomal protein S4 gi|13623152|gb|AAK34809.1| 30S ribosomal protein S4 [Streptococcus pyogenes M1 GAS] gi|19749271|gb|AAL98649.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS8232] gi|21905585|gb|AAM80440.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS315] gi|28811995|dbj|BAC64924.1| 30S ribosomal protein S4 [Streptococcus pyogenes SSI-1] gi|50904271|gb|AAT87986.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS10394] gi|71803622|gb|AAX72975.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS6180] gi|71854426|gb|AAZ52449.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS5005] gi|94542982|gb|ABF33031.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS9429] gi|94544969|gb|ABF35017.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS10270] gi|94546869|gb|ABF36916.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS2096] gi|134272850|emb|CAM31130.1| 30S ribosomal protein S4 [Streptococcus pyogenes str. Manfredo] gi|242392163|dbj|BAH82622.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304431375|gb|EFM34372.1| 30S ribosomal protein S4 [Streptococcus pyogenes ATCC 10782] Length = 203 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|119025715|ref|YP_909560.1| 30S ribosomal protein S4 [Bifidobacterium adolescentis ATCC 15703] gi|154487466|ref|ZP_02028873.1| hypothetical protein BIFADO_01319 [Bifidobacterium adolescentis L2-32] gi|152060937|sp|A1A195|RS4_BIFAA RecName: Full=30S ribosomal protein S4 gi|118765299|dbj|BAF39478.1| 30S ribosomal protein S4 [Bifidobacterium adolescentis ATCC 15703] gi|154083984|gb|EDN83029.1| hypothetical protein BIFADO_01319 [Bifidobacterium adolescentis L2-32] Length = 208 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T + +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGQTGNAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKAKSQTMVPFQAAAEGVHRDVLPAVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +++P V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEIPVQVNIQ--YVVEFYAR 208 >gi|317494318|ref|ZP_07952732.1| ribosomal protein S4 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917568|gb|EFV38913.1| ribosomal protein S4 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ V+VNGR VNI SY+ DV+ V++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAVVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P D+ + +L+VE YS+ Sbjct: 179 EGVFKRNPER-SDLSADI--NEHLIVELYSK 206 >gi|167855326|ref|ZP_02478094.1| 30S ribosomal protein S4 [Haemophilus parasuis 29755] gi|219871572|ref|YP_002475947.1| 30S ribosomal protein S4 [Haemophilus parasuis SH0165] gi|254764591|sp|B8F6P7|RS4_HAEPS RecName: Full=30S ribosomal protein S4 gi|167853584|gb|EDS24830.1| 30S ribosomal protein S4 [Haemophilus parasuis 29755] gi|219691776|gb|ACL32999.1| 30S ribosomal protein S4 [Haemophilus parasuis SH0165] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DVI V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSIVVNGRVVNIPSYQVSVDDVIAVREKSKKQARIKASLELATQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + +L+VE YS+ Sbjct: 176 TKMEGVFKRTPER-SDLSADI--NEHLIVELYSK 206 >gi|158319571|ref|YP_001512078.1| ribosomal protein S4 [Alkaliphilus oremlandii OhILAs] gi|172048249|sp|A8MLG8|RS4A_ALKOO RecName: Full=30S ribosomal protein S4 A gi|158139770|gb|ABW18082.1| ribosomal protein S4 [Alkaliphilus oremlandii OhILAs] Length = 207 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 120/212 (56%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K ++ R+Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTEAVCRLCRREGMKLYLKGDRCYTDKCAISKRTYAPGQHGQSRK-KLSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K++YG + E +FR F+ AD+ G T NL+ LE+RLD + YR F + ARQ Sbjct: 60 KQKAKRFYG-VLESQFRKYFEIADKQAGITGENLLRLLETRLDNVAYRLGFGSSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H VNG+ V+I SY GD I V +KSK A ++ A+ + P +++V+ + Sbjct: 119 LVVHGHFTVNGKKVDIPSYLVSAGDTIAVAEKSKSSAKFKALAENAKGNTPNWLTVDVEK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + V +PS +D+ + NL+VE YS+ Sbjct: 179 LEGKVVALPSR-EDIDLEI--AENLIVELYSK 207 >gi|330432100|gb|AEC17159.1| 30S ribosomal protein S4 [Gallibacterium anatis UMN179] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++KSK+ A + + +LAE ++ P ++ V+ Sbjct: 116 QLVSHKAIIVNGRVVNIPSFQVSVDDVIAVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|313201502|ref|YP_004040160.1| 30S ribosomal protein S4 [Methylovorus sp. MP688] gi|312440818|gb|ADQ84924.1| ribosomal protein S4 [Methylovorus sp. MP688] Length = 205 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 MS+ + K+ R +G +L G + + R PG HG + + K S FG++L KQK++ Sbjct: 1 MSRFTGPRLKVMRALGVDLPGLSRKSIEQRPTPPGQHGAKAVRRKKSDFGIKLMEKQKLR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++ R + +A R + T L+ LE RLD +V+RA F PTI AARQ V+HR Sbjct: 61 FNYG-LSERQLRRLMVDARRGKAPTGETLLQLLERRLDNVVFRAGFAPTIAAARQLVSHR 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ +NG+ V+I S R + GD I +K S Q+ V E + PE++S + VA Sbjct: 120 HLQLNGKVVSIPSIRLRVGDEISLKPASAQIPIVNETLKDMPLIRPEWLSWDDTQRVARI 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +P++ +DVP+PV +Q VVE+Y+ Sbjct: 180 AHLPAA-EDVPFPVDVQQ--VVEYYA 202 >gi|223043626|ref|ZP_03613671.1| ribosomal protein S4 [Staphylococcus capitis SK14] gi|222443114|gb|EEE49214.1| ribosomal protein S4 [Staphylococcus capitis SK14] Length = 200 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFEIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLNIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|52426079|ref|YP_089216.1| 30S ribosomal protein S4 [Mannheimia succiniciproducens MBEL55E] gi|61215476|sp|Q65QX9|RS4_MANSM RecName: Full=30S ribosomal protein S4 gi|52308131|gb|AAU38631.1| RpsD protein [Mannheimia succiniciproducens MBEL55E] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|68249397|ref|YP_248509.1| 30S ribosomal protein S4 [Haemophilus influenzae 86-028NP] gi|145628304|ref|ZP_01784105.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.1-21] gi|145630548|ref|ZP_01786328.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021] gi|145632160|ref|ZP_01787895.1| 30S ribosomal protein S4 [Haemophilus influenzae 3655] gi|145634787|ref|ZP_01790495.1| 30S ribosomal protein S4 [Haemophilus influenzae PittAA] gi|145636640|ref|ZP_01792307.1| 30S ribosomal protein S4 [Haemophilus influenzae PittHH] gi|145638397|ref|ZP_01794007.1| 30S ribosomal protein S4 [Haemophilus influenzae PittII] gi|145640900|ref|ZP_01796482.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021] gi|148826554|ref|YP_001291307.1| 30S ribosomal protein S4 [Haemophilus influenzae PittEE] gi|148827990|ref|YP_001292743.1| 30S ribosomal protein S4 [Haemophilus influenzae PittGG] gi|229844669|ref|ZP_04464808.1| 30S ribosomal protein S4 [Haemophilus influenzae 6P18H1] gi|229845852|ref|ZP_04465964.1| 30S ribosomal protein S4 [Haemophilus influenzae 7P49H1] gi|260581618|ref|ZP_05849415.1| ribosomal protein S4 [Haemophilus influenzae NT127] gi|319775264|ref|YP_004137752.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3047] gi|319897704|ref|YP_004135901.1| 30S ribosomal subunit protein s4 [Haemophilus influenzae F3031] gi|329122807|ref|ZP_08251379.1| 30S ribosomal protein S4 [Haemophilus aegyptius ATCC 11116] gi|81336176|sp|Q4QM98|RS4_HAEI8 RecName: Full=30S ribosomal protein S4 gi|172048051|sp|A5UDS3|RS4_HAEIE RecName: Full=30S ribosomal protein S4 gi|172048057|sp|A5UHV4|RS4_HAEIG RecName: Full=30S ribosomal protein S4 gi|68057596|gb|AAX87849.1| 30S ribosomal protein S4 [Haemophilus influenzae 86-028NP] gi|144980079|gb|EDJ89738.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.1-21] gi|144983938|gb|EDJ91380.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021] gi|144987067|gb|EDJ93597.1| 30S ribosomal protein S4 [Haemophilus influenzae 3655] gi|145267953|gb|EDK07949.1| 30S ribosomal protein S4 [Haemophilus influenzae PittAA] gi|145270166|gb|EDK10102.1| 30S ribosomal protein S4 [Haemophilus influenzae PittHH] gi|145272726|gb|EDK12633.1| 30S ribosomal protein S4 [Haemophilus influenzae PittII] gi|145274414|gb|EDK14278.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.4-21] gi|148716714|gb|ABQ98924.1| 30S ribosomal protein S4 [Haemophilus influenzae PittEE] gi|148719232|gb|ABR00360.1| 30S ribosomal protein S4 [Haemophilus influenzae PittGG] gi|229810856|gb|EEP46573.1| 30S ribosomal protein S4 [Haemophilus influenzae 7P49H1] gi|229812383|gb|EEP48073.1| 30S ribosomal protein S4 [Haemophilus influenzae 6P18H1] gi|260095211|gb|EEW79102.1| ribosomal protein S4 [Haemophilus influenzae NT127] gi|309751537|gb|ADO81521.1| 30S ribosomal protein S4 [Haemophilus influenzae R2866] gi|309973707|gb|ADO96908.1| 30S ribosomal protein S4 [Haemophilus influenzae R2846] gi|317433210|emb|CBY81585.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3031] gi|317449855|emb|CBY86066.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3047] gi|327472071|gb|EGF17509.1| 30S ribosomal protein S4 [Haemophilus aegyptius ATCC 11116] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|15900029|ref|NP_344633.1| 30S ribosomal protein S4 [Streptococcus pneumoniae TIGR4] gi|15902122|ref|NP_357672.1| 30S ribosomal protein S4 [Streptococcus pneumoniae R6] gi|111656925|ref|ZP_01407747.1| hypothetical protein SpneT_02001834 [Streptococcus pneumoniae TIGR4] gi|116516581|ref|YP_815552.1| 30S ribosomal protein S4 [Streptococcus pneumoniae D39] gi|148985431|ref|ZP_01818636.1| ribosomal protein S4 [Streptococcus pneumoniae SP3-BS71] gi|148987815|ref|ZP_01819278.1| ribosomal protein S4 [Streptococcus pneumoniae SP6-BS73] gi|148993925|ref|ZP_01823308.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP9-BS68] gi|148996492|ref|ZP_01824210.1| ribosomal protein S4 [Streptococcus pneumoniae SP11-BS70] gi|149001831|ref|ZP_01826804.1| ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] gi|149007938|ref|ZP_01831516.1| ribosomal protein S4 [Streptococcus pneumoniae SP18-BS74] gi|149010947|ref|ZP_01832252.1| ribosomal protein S4 [Streptococcus pneumoniae SP19-BS75] gi|149017758|ref|ZP_01834217.1| ribosomal protein S4 [Streptococcus pneumoniae SP23-BS72] gi|168483611|ref|ZP_02708563.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1873-00] gi|168486664|ref|ZP_02711172.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1087-00] gi|168489443|ref|ZP_02713642.1| ribosomal protein S4 [Streptococcus pneumoniae SP195] gi|168492605|ref|ZP_02716748.1| ribosomal protein S4 [Streptococcus pneumoniae CDC0288-04] gi|168493783|ref|ZP_02717926.1| ribosomal protein S4 [Streptococcus pneumoniae CDC3059-06] gi|168577080|ref|ZP_02722909.1| ribosomal protein S4 [Streptococcus pneumoniae MLV-016] gi|169832653|ref|YP_001693607.1| 30S ribosomal protein S4 [Streptococcus pneumoniae Hungary19A-6] gi|182683053|ref|YP_001834800.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CGSP14] gi|194398306|ref|YP_002036801.1| 30S ribosomal protein S4 [Streptococcus pneumoniae G54] gi|221231025|ref|YP_002510177.1| 30S ribosomal protein S4 [Streptococcus pneumoniae ATCC 700669] gi|225853713|ref|YP_002735225.1| 30S ribosomal protein S4 [Streptococcus pneumoniae JJA] gi|225855868|ref|YP_002737379.1| 30S ribosomal protein S4 [Streptococcus pneumoniae P1031] gi|225857950|ref|YP_002739460.1| 30S ribosomal protein S4 [Streptococcus pneumoniae 70585] gi|225860120|ref|YP_002741629.1| 30S ribosomal protein S4 [Streptococcus pneumoniae Taiwan19F-14] gi|237649598|ref|ZP_04523850.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CCRI 1974] gi|237821538|ref|ZP_04597383.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CCRI 1974M2] gi|270291733|ref|ZP_06197949.1| ribosomal protein S4 [Streptococcus sp. M143] gi|289166998|ref|YP_003445265.1| 30S ribosomal protein S4 [Streptococcus mitis B6] gi|293364636|ref|ZP_06611357.1| 30S ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|298230010|ref|ZP_06963691.1| 30S ribosomal protein S4 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254521|ref|ZP_06978107.1| 30S ribosomal protein S4 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501873|ref|YP_003723813.1| 30S ribosomal protein S4 [Streptococcus pneumoniae TCH8431/19A] gi|303254819|ref|ZP_07340919.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS455] gi|303259128|ref|ZP_07345106.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP-BS293] gi|303260885|ref|ZP_07346834.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS292] gi|303263212|ref|ZP_07349135.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS397] gi|303267315|ref|ZP_07353176.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS457] gi|303269590|ref|ZP_07355351.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS458] gi|306826273|ref|ZP_07459607.1| 30S ribosomal protein S4 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306828536|ref|ZP_07461731.1| 30S ribosomal protein S4 [Streptococcus mitis ATCC 6249] gi|307066759|ref|YP_003875725.1| hypothetical protein SPAP_0129 [Streptococcus pneumoniae AP200] gi|307126310|ref|YP_003878341.1| 30S ribosomal protein S4 [Streptococcus pneumoniae 670-6B] gi|307702893|ref|ZP_07639841.1| ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|307705409|ref|ZP_07642267.1| ribosomal protein S4 [Streptococcus mitis SK597] gi|307707985|ref|ZP_07644460.1| ribosomal protein S4 [Streptococcus mitis NCTC 12261] gi|307710135|ref|ZP_07646579.1| ribosomal protein S4 [Streptococcus mitis SK564] gi|307711286|ref|ZP_07647707.1| ribosomal protein S4 [Streptococcus mitis SK321] gi|315612070|ref|ZP_07886987.1| 30S ribosomal protein S4 [Streptococcus sanguinis ATCC 49296] gi|322376030|ref|ZP_08050540.1| ribosomal protein S4 [Streptococcus sp. C300] gi|322378050|ref|ZP_08052537.1| ribosomal protein S4 [Streptococcus sp. M334] gi|322386473|ref|ZP_08060100.1| 30S ribosomal protein S4 [Streptococcus cristatus ATCC 51100] gi|331265518|ref|YP_004325148.1| 30S ribosomal protein S4 [Streptococcus oralis Uo5] gi|54039512|sp|P66566|RS4_STRR6 RecName: Full=30S ribosomal protein S4 gi|54041964|sp|P66565|RS4_STRPN RecName: Full=30S ribosomal protein S4 gi|122279509|sp|Q04MZ3|RS4_STRP2 RecName: Full=30S ribosomal protein S4 gi|226695082|sp|B5E5W8|RS4_STRP4 RecName: Full=30S ribosomal protein S4 gi|226695083|sp|B1I7Y6|RS4_STRPI RecName: Full=30S ribosomal protein S4 gi|226695084|sp|B2IRG4|RS4_STRPS RecName: Full=30S ribosomal protein S4 gi|254764612|sp|C1C9Y5|RS4_STRP7 RecName: Full=30S ribosomal protein S4 gi|254764613|sp|B8ZJX3|RS4_STRPJ RecName: Full=30S ribosomal protein S4 gi|254764615|sp|C1CBQ4|RS4_STRZJ RecName: Full=30S ribosomal protein S4 gi|254764616|sp|C1CHZ1|RS4_STRZP RecName: Full=30S ribosomal protein S4 gi|254764617|sp|C1CNV7|RS4_STRZT RecName: Full=30S ribosomal protein S4 gi|14971552|gb|AAK74273.1| ribosomal protein S4 [Streptococcus pneumoniae TIGR4] gi|15457613|gb|AAK98882.1| 30S Ribosomal protein S4 [Streptococcus pneumoniae R6] gi|116077157|gb|ABJ54877.1| ribosomal protein S4 [Streptococcus pneumoniae D39] gi|147757067|gb|EDK64106.1| ribosomal protein S4 [Streptococcus pneumoniae SP11-BS70] gi|147760289|gb|EDK67278.1| ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] gi|147760561|gb|EDK67536.1| ribosomal protein S4 [Streptococcus pneumoniae SP18-BS74] gi|147764583|gb|EDK71513.1| ribosomal protein S4 [Streptococcus pneumoniae SP19-BS75] gi|147922389|gb|EDK73509.1| ribosomal protein S4 [Streptococcus pneumoniae SP3-BS71] gi|147926279|gb|EDK77352.1| ribosomal protein S4 [Streptococcus pneumoniae SP6-BS73] gi|147927632|gb|EDK78658.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP9-BS68] gi|147931322|gb|EDK82300.1| ribosomal protein S4 [Streptococcus pneumoniae SP23-BS72] gi|168995155|gb|ACA35767.1| ribosomal protein S4 [Streptococcus pneumoniae Hungary19A-6] gi|172043018|gb|EDT51064.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1873-00] gi|182628387|gb|ACB89335.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CGSP14] gi|183570308|gb|EDT90836.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1087-00] gi|183572140|gb|EDT92668.1| ribosomal protein S4 [Streptococcus pneumoniae SP195] gi|183573248|gb|EDT93776.1| ribosomal protein S4 [Streptococcus pneumoniae CDC0288-04] gi|183576019|gb|EDT96547.1| ribosomal protein S4 [Streptococcus pneumoniae CDC3059-06] gi|183577316|gb|EDT97844.1| ribosomal protein S4 [Streptococcus pneumoniae MLV-016] gi|194357973|gb|ACF56421.1| 30S ribosomal protein S4 [Streptococcus pneumoniae G54] gi|220673485|emb|CAR67956.1| 30S ribosomal protein S4 [Streptococcus pneumoniae ATCC 700669] gi|225720035|gb|ACO15889.1| ribosomal protein S4 [Streptococcus pneumoniae 70585] gi|225723223|gb|ACO19076.1| ribosomal protein S4 [Streptococcus pneumoniae JJA] gi|225724355|gb|ACO20207.1| ribosomal protein S4 [Streptococcus pneumoniae P1031] gi|225727282|gb|ACO23133.1| ribosomal protein S4 [Streptococcus pneumoniae Taiwan19F-14] gi|270279818|gb|EFA25659.1| ribosomal protein S4 [Streptococcus sp. M143] gi|288906563|emb|CBJ21396.1| 30S ribosomal protein S4 [Streptococcus mitis B6] gi|291316894|gb|EFE57326.1| 30S ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|298237468|gb|ADI68599.1| 30S ribosomal protein S4 [Streptococcus pneumoniae TCH8431/19A] gi|301793388|emb|CBW35753.1| 30S ribosomal protein S4 [Streptococcus pneumoniae INV104] gi|301799257|emb|CBW31777.1| 30S ribosomal protein S4 [Streptococcus pneumoniae OXC141] gi|301801046|emb|CBW33713.1| 30S ribosomal protein S4 [Streptococcus pneumoniae INV200] gi|302598256|gb|EFL65302.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS455] gi|302637722|gb|EFL68208.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS292] gi|302639546|gb|EFL70003.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP-BS293] gi|302640864|gb|EFL71250.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS458] gi|302643166|gb|EFL73452.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS457] gi|302646985|gb|EFL77209.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS397] gi|304429335|gb|EFM32420.1| 30S ribosomal protein S4 [Streptococcus mitis ATCC 6249] gi|304431549|gb|EFM34531.1| 30S ribosomal protein S4 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306408296|gb|ADM83723.1| hypothetical protein SPAP_0129 [Streptococcus pneumoniae AP200] gi|306483372|gb|ADM90241.1| ribosomal protein S4 [Streptococcus pneumoniae 670-6B] gi|307616050|gb|EFN95248.1| ribosomal protein S4 [Streptococcus mitis NCTC 12261] gi|307616937|gb|EFN96116.1| ribosomal protein S4 [Streptococcus mitis SK321] gi|307619115|gb|EFN98247.1| ribosomal protein S4 [Streptococcus mitis SK564] gi|307621040|gb|EFO00119.1| ribosomal protein S4 [Streptococcus mitis SK597] gi|307623573|gb|EFO02562.1| ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|315315872|gb|EFU63907.1| 30S ribosomal protein S4 [Streptococcus sanguinis ATCC 49296] gi|321269392|gb|EFX52325.1| 30S ribosomal protein S4 [Streptococcus cristatus ATCC 51100] gi|321278980|gb|EFX56023.1| ribosomal protein S4 [Streptococcus sp. C300] gi|321281032|gb|EFX58045.1| ribosomal protein S4 [Streptococcus sp. M334] gi|326682190|emb|CBY99806.1| 30S ribosomal protein S4 [Streptococcus oralis Uo5] gi|327390493|gb|EGE88833.1| ribosomal protein S4 [Streptococcus pneumoniae GA04375] gi|332075747|gb|EGI86214.1| ribosomal protein S4 [Streptococcus pneumoniae GA17570] gi|332076539|gb|EGI87001.1| ribosomal protein S4 [Streptococcus pneumoniae GA17545] gi|332077392|gb|EGI87853.1| ribosomal protein S4 [Streptococcus pneumoniae GA41301] Length = 203 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|16272743|ref|NP_438961.1| 30S ribosomal protein S4 [Haemophilus influenzae Rd KW20] gi|260579893|ref|ZP_05847723.1| ribosomal protein S4 [Haemophilus influenzae RdAW] gi|1173260|sp|P44373|RS4_HAEIN RecName: Full=30S ribosomal protein S4 gi|1573812|gb|AAC22460.1| ribosomal protein S4 (rpS4) [Haemophilus influenzae Rd KW20] gi|260093177|gb|EEW77110.1| ribosomal protein S4 [Haemophilus influenzae RdAW] gi|301169520|emb|CBW29121.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae 10810] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFATTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KSK+ A + + +LAE R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|167629495|ref|YP_001679994.1| 30S ribosomal protein s4 [Heliobacterium modesticaldum Ice1] gi|226699071|sp|B0TC84|RS4_HELMI RecName: Full=30S ribosomal protein S4 gi|167592235|gb|ABZ83983.1| 30S ribosomal protein s4 [Heliobacterium modesticaldum Ice1] Length = 208 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE +K + GE + K V+ R+Y PG HGQ RK K S +GLQLR KQK ++ Sbjct: 11 LCRREGAKLYLK---GERCY-TGKCAVDRRTYAPGQHGQGRK-KISEYGLQLREKQKARR 65 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E +FR+ F EADR +G T NL+ LE+RLD +V+R F + ARQFV H H Sbjct: 66 VYG-ILEGQFRAYFAEADRQQGVTGENLLRLLETRLDNVVFRLGFARSRNEARQFVLHNH 124 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF 179 +NG+ VNI S + + GDVI++K+KSK E L ++ P ++ ++ + + Sbjct: 125 FTLNGKKVNIPSIQLRVGDVIQLKEKSKDTPLFKEIVDGLGQKTPPAWLELDVNTLSGRV 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +D+ +Q +L+VE YSR Sbjct: 185 IALPKR-EDI--DTNLQEHLIVELYSR 208 >gi|21230387|ref|NP_636304.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21241760|ref|NP_641342.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citri str. 306] gi|66769619|ref|YP_244381.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. 8004] gi|78046578|ref|YP_362753.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|188992831|ref|YP_001904841.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. B100] gi|294627861|ref|ZP_06706440.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664166|ref|ZP_06729552.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325916510|ref|ZP_08178779.1| SSU ribosomal protein S4P [Xanthomonas vesicatoria ATCC 35937] gi|325921504|ref|ZP_08183359.1| SSU ribosomal protein S4P [Xanthomonas gardneri ATCC 19865] gi|325925364|ref|ZP_08186766.1| SSU ribosomal protein S4P [Xanthomonas perforans 91-118] gi|59800213|sp|P0A0X9|RS4_XANCP RecName: Full=30S ribosomal protein S4 gi|59800214|sp|P0A0Y0|RS4_XANAC RecName: Full=30S ribosomal protein S4 gi|81304426|sp|Q4URG2|RS4_XANC8 RecName: Full=30S ribosomal protein S4 gi|90101736|sp|Q3BWW0|RS4_XANC5 RecName: Full=30S ribosomal protein S4 gi|226695102|sp|B0RU59|RS4_XANCB RecName: Full=30S ribosomal protein S4 gi|4098576|gb|AAD00324.1| ribosomal protein S4 [Xanthomonas campestris pv. campestris] gi|21107132|gb|AAM35878.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citri str. 306] gi|21111944|gb|AAM40228.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574951|gb|AAY50361.1| 30S ribosomal protein s4 [Xanthomonas campestris pv. campestris str. 8004] gi|78035008|emb|CAJ22653.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|167734591|emb|CAP52801.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris] gi|292597775|gb|EFF41933.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606069|gb|EFF49334.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325537299|gb|EGD09026.1| SSU ribosomal protein S4P [Xanthomonas vesicatoria ATCC 35937] gi|325544242|gb|EGD15623.1| SSU ribosomal protein S4P [Xanthomonas perforans 91-118] gi|325548051|gb|EGD19050.1| SSU ribosomal protein S4P [Xanthomonas gardneri ATCC 19865] Length = 208 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 10/203 (4%) Query: 10 KIDRRIGENL-WGRPKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L P ++++ PG HG RK K S + QLR KQK+K+ YG + Sbjct: 10 KLARREGADLSLKSPARALDSKCKLEQKPGQHGAARKGKLSDYATQLREKQKVKRIYG-L 68 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 E++FR+ +K+A +G+T NL+ LE+RLD + YR F T AARQ V+HR VLVNG Sbjct: 69 LERQFRNYYKKASTKKGNTGENLLQLLETRLDNVCYRMGFAVTRPAARQLVSHRGVLVNG 128 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIP 183 +SVN+ SY+ K GD I + +K+++ V EA +AE+ P ++ V+ F +P Sbjct: 129 KSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVDSKKFSGVFKAVP 188 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 D+P + L+VE YS+ Sbjct: 189 DR-ADLPSDI--NEALIVELYSK 208 >gi|221310909|ref|ZP_03592756.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. 168] Length = 200 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSVTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L+SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY K G I V++KS+ L S+++ S VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYLVKPGQTIGVREKSRNL-SIIKESVEVNNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAPE---INEALIVEFYSR 200 >gi|251797775|ref|YP_003012506.1| ribosomal protein S4 [Paenibacillus sp. JDR-2] gi|247545401|gb|ACT02420.1| ribosomal protein S4 [Paenibacillus sp. JDR-2] Length = 199 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K K+ RR+G +L G K R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MSRYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGPNQRKKLSGYGVQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR++F +A + +G + N + LESRLD +V+R F + ARQ V+H H Sbjct: 59 MYG-LNEKQFRNLFDKAAKLKGISGENFMVLLESRLDNLVFRLGFANSRAGARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY GDVI ++++S+ L S+ EA + +P YI N + +V Sbjct: 118 VTVNGKKVDIASYTVSTGDVIGLRERSRGLKSIKEAIE-GRHHLPNYIEFNDAAVEGKYV 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 177 RLP---ERAELSQEIDEKQIVEFYSR 199 >gi|90020630|ref|YP_526457.1| 30S ribosomal protein S4P [Saccharophagus degradans 2-40] gi|123277582|sp|Q21M34|RS4_SACD2 RecName: Full=30S ribosomal protein S4 gi|89950230|gb|ABD80245.1| SSU ribosomal protein S4P [Saccharophagus degradans 2-40] Length = 206 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L+ RP PG HGQRR + S +G+QLR KQK+++ YG + Sbjct: 10 KLSRREGTDLFLKSGVRPLESKCKAEAAPGQHGQRR-GRLSDYGVQLREKQKVRRIYG-V 67 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+FR+ +K+A R +G T NL+ LE RLD +VYR F T +RQ V+H+ +LVNG Sbjct: 68 LEKQFRNYYKDAARIKGATGENLLKLLEGRLDNVVYRMGFGSTRAESRQLVSHKAILVNG 127 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS 184 ++VNI S++ GDVI V++KSK + + +A +R E++ VN + F R P Sbjct: 128 KTVNIPSFQVNVGDVISVREKSKNQLRIQNSLGIAGQRADVEWVDVNTEKKEGVFKRCPD 187 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 P + NL+VE YS+ Sbjct: 188 R---ADLPAEINENLIVELYSK 206 >gi|56808368|ref|ZP_00366123.1| COG0522: Ribosomal protein S4 and related proteins [Streptococcus pyogenes M49 591] Length = 203 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLKGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|293393288|ref|ZP_06637602.1| 30S ribosomal protein S4 [Serratia odorifera DSM 4582] gi|291424198|gb|EFE97413.1| 30S ribosomal protein S4 [Serratia odorifera DSM 4582] Length = 206 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R K + S +G+QLR KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE Sbjct: 38 PGQHGAR-KPRLSDYGVQLREKQKVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR F T ARQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V Sbjct: 96 GRLDNVVYRMGFGATRAEARQLVSHKGIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +LAE R+ P ++ V+ M F RIP + +L+VE YS+ Sbjct: 156 KAALELAEQREKPTWLEVDAAKMEGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|295677907|ref|YP_003606431.1| ribosomal protein S4 [Burkholderia sp. CCGE1002] gi|295437750|gb|ADG16920.1| ribosomal protein S4 [Burkholderia sp. CCGE1002] Length = 207 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V H+ + VNG NI S + K GDV+ V+++ ++ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVGHKAITVNGVVTNIPSMQVKAGDVVAVREQKRKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER-SDIAGDI--NESLIVELYSR 207 >gi|124268602|ref|YP_001022606.1| 30S ribosomal protein S4 [Methylibium petroleiphilum PM1] gi|152112230|sp|A2SLD2|RS4_METPP RecName: Full=30S ribosomal protein S4 gi|124261377|gb|ABM96371.1| SSU ribosomal protein S4P [Methylibium petroleiphilum PM1] Length = 207 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS T+ PG HG+ S+ S FGLQLR Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRAIGDKSKFETK---PGQHGRTSGSRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA+R +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYFAEAERRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG VNI SY K GDV+ V++K+K+ V E+ +LAE +P ++ V+ Sbjct: 117 QLVSHKGITVNGEVVNIASYLVKTGDVVAVREKAKKQLRVTESLKLAESMGLPAWVQVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F + P +D + + +L+VE YSR Sbjct: 177 TKLEGVFKKSPD--RD-EFGSDINESLIVELYSR 207 >gi|89076300|ref|ZP_01162641.1| 30S ribosomal protein S4 [Photobacterium sp. SKA34] gi|90581702|ref|ZP_01237490.1| 30S ribosomal protein S4 [Vibrio angustum S14] gi|330447013|ref|ZP_08310663.1| ribosomal protein S4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|89048004|gb|EAR53593.1| 30S ribosomal protein S4 [Photobacterium sp. SKA34] gi|90437117|gb|EAS62320.1| 30S ribosomal protein S4 [Vibrio angustum S14] gi|328491204|dbj|GAA05160.1| ribosomal protein S4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 206 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K A R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRTYG-VLEKQFRNYYKTAARIKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+K A + A ++A +R++P ++ V+ M Sbjct: 119 SHKAILVNGQVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDSSKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADI--NEHLIVELYSK 206 >gi|312968379|ref|ZP_07782589.1| ribosomal protein S4 [Escherichia coli 2362-75] gi|312287204|gb|EFR15114.1| ribosomal protein S4 [Escherichia coli 2362-75] Length = 206 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VN R VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNDRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|295694865|ref|YP_003588103.1| ribosomal protein S4 [Bacillus tusciae DSM 2912] gi|295410467|gb|ADG04959.1| ribosomal protein S4 [Bacillus tusciae DSM 2912] Length = 208 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 110/184 (59%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ R Y PG HGQ R+ K S +G+QLR KQK ++ YG + EK+FR ++EA+R G Sbjct: 30 KCAIDRRGYAPGQHGQGRR-KQSEYGIQLREKQKARRTYG-VLEKQFRHYYEEANRQHGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD +VYR + + ARQ V H H VNGR V+I SY+ KEGDV+ V Sbjct: 88 TGEVLLQLLERRLDNVVYRLGYAASRAEARQLVRHGHFTVNGRRVDIPSYQLKEGDVVAV 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS + + E + A+ R VP ++ + +RIP+ ++ PV Q ++VE Sbjct: 148 REKSLESPRLKELVETADSRTVPAWLDRDSATASGKVLRIPTR-DEIDTPV--QEQMIVE 204 Query: 203 FYSR 206 YSR Sbjct: 205 LYSR 208 >gi|94995345|ref|YP_603443.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS10750] gi|152112267|sp|Q1J462|RS4_STRPF RecName: Full=30S ribosomal protein S4 gi|94548853|gb|ABF38899.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS10750] Length = 203 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGAL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|170718273|ref|YP_001785291.1| 30S ribosomal protein S4 [Haemophilus somnus 2336] gi|189045384|sp|B0UX38|RS4_HAES2 RecName: Full=30S ribosomal protein S4 gi|168826402|gb|ACA31773.1| ribosomal protein S4 [Haemophilus somnus 2336] Length = 206 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR-------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVEA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|260772120|ref|ZP_05881037.1| SSU ribosomal protein S4p (S9e) [Vibrio metschnikovii CIP 69.14] gi|260612987|gb|EEX38189.1| SSU ribosomal protein S4p (S9e) [Vibrio metschnikovii CIP 69.14] Length = 202 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 124/204 (60%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V+H+ +LV Sbjct: 63 -VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAILV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NG VN+ S+ DV+ +++K+K+ + + A ++AE R+ P +I V+ M TF R Sbjct: 122 NGSVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASQMEGTFKRK 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + Q L+VE YS+ Sbjct: 182 PER-SDLSADINEQ--LIVELYSK 202 >gi|119960630|ref|YP_948024.1| 30S ribosomal protein S4 [Arthrobacter aurescens TC1] gi|152060931|sp|A1R712|RS4_ARTAT RecName: Full=30S ribosomal protein S4 gi|119947489|gb|ABM06400.1| ribosomal protein S4 [Arthrobacter aurescens TC1] Length = 206 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 6/199 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + + R YGPG HG+ RK + S + ++LR KQ+++ YG I E + Sbjct: 12 RLSRALGIALTPKAAKYMERRPYGPGEHGRARKKQDSDYAVRLREKQRLRAQYG-IREAQ 70 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 F+EA R++G T NL+ LE RLD +V RA F TI ARQ V HRH++V+G V+ Sbjct: 71 MTRAFEEARRTKGLTGENLVELLEMRLDALVLRAGFARTIAQARQLVVHRHIMVDGIRVD 130 Query: 130 IGSYRCKEGDVIEVKQKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 S+R EG +I V +S+ + V A +VP Y+ V D + A VR P K Sbjct: 131 RPSFRVGEGQLIHVHSRSEVMPPFQVAAAGAHVLNNVPAYLDVKIDALQARLVRRP---K 187 Query: 188 DVPYPVIMQPNLVVEFYSR 206 PVI + LVVEFY+R Sbjct: 188 RSEVPVICEEQLVVEFYAR 206 >gi|146297258|ref|YP_001181029.1| ribosomal protein S4 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|172046028|sp|A4XLQ3|RS4_CALS8 RecName: Full=30S ribosomal protein S4 gi|145410834|gb|ABP67838.1| SSU ribosomal protein S4P [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 208 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFAKRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNG++VNI SY GDVIEVK+KSK +E + A+R P+++ + + Sbjct: 119 LVSHAHFKVNGKTVNIPSYLVDVGDVIEVKEKSKSKPRFIEIKEKYAKRPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPI--KEHLIVELYSK 208 >gi|327449339|gb|EGE95993.1| ribosomal protein S4 [Propionibacterium acnes HL013PA2] Length = 201 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RGRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++ T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQSKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|30250077|ref|NP_842147.1| 30S ribosomal protein S4 [Nitrosomonas europaea ATCC 19718] gi|41017976|sp|Q82T00|RS4B_NITEU RecName: Full=30S ribosomal protein S4 B gi|30139184|emb|CAD86054.1| Ribosomal protein S4:S4 domain [Nitrosomonas europaea ATCC 19718] Length = 205 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG----QRRKSKPSYFGLQLRAKQ 56 MS+ + KI R +G +L G + + +R PG HG +RRKS FG++L+ KQ Sbjct: 1 MSRFTGPRLKIMRALGVDLPGLSRKTIASRPTPPGQHGAKLVRRRKSD---FGIKLQEKQ 57 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ YG +SE++ R + A +S T L+ LE RLD +V+RA F PT+ AARQ V Sbjct: 58 KLRFNYG-LSERQLRHLMLNARKSTEPTGETLLQLLERRLDNVVFRAGFAPTVIAARQLV 116 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV 176 +HRHV +NG+ VNI S R GD I +K +S L VL Q PE++ + + Sbjct: 117 SHRHVRLNGKPVNIPSIRLNVGDEITIKPESLNLPIVLGTLQDLPLSRPEWLLWDEKDKT 176 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 +P++ +DVP+P+ +Q VVE+Y+ Sbjct: 177 GKITHLPTA-EDVPFPIDVQQ--VVEYYA 202 >gi|291456658|ref|ZP_06596048.1| ribosomal protein S4 [Bifidobacterium breve DSM 20213] gi|291381935|gb|EFE89453.1| ribosomal protein S4 [Bifidobacterium breve DSM 20213] Length = 208 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 123/208 (59%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + +++R KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRDRRRTESDYAVRMREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++A R+ G T + +++ LE+RLD +V RA T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKATRTAGQTGNAMLTDLETRLDNLVLRAGIARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNVVDRPSYRVKPGQTIQVKAKSQTMVPFQIAAEGVHRDVLPAVPGYLDVNLASLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++++P V +Q VVEFY+R Sbjct: 184 LTRKP-EVEEIPVQVNIQ--YVVEFYAR 208 >gi|209693947|ref|YP_002261875.1| 30S ribosomal protein S4 [Aliivibrio salmonicida LFI1238] gi|226697795|sp|B6EPU8|RS4_ALISL RecName: Full=30S ribosomal protein S4 gi|208007898|emb|CAQ78028.1| 30S ribosomal protein S4 [Aliivibrio salmonicida LFI1238] Length = 206 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKDAARIKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+K + + A ++AE R+ P +I V+ M Sbjct: 119 SHKSILVNGKVVNVPSFKVSANDVVSIREKAKLQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADI--NEHLIVELYSK 206 >gi|166154841|ref|YP_001654959.1| 30S ribosomal protein S4 [Chlamydia trachomatis 434/Bu] gi|166155716|ref|YP_001653971.1| 30S ribosomal protein S4 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336122|ref|ZP_07224366.1| 30S ribosomal protein S4 [Chlamydia trachomatis L2tet1] gi|226697823|sp|B0B8K1|RS4_CHLT2 RecName: Full=30S ribosomal protein S4 gi|226697825|sp|B0BA80|RS4_CHLTB RecName: Full=30S ribosomal protein S4 gi|165930829|emb|CAP04327.1| SSU ribosomal protein S4P [Chlamydia trachomatis 434/Bu] gi|165931704|emb|CAP07281.1| SSU ribosomal protein S4P [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 209 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLLRKPNPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ +KE +G+ + + E RLD+IVYR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAYKEVVNKQGNVAQMFLEKFECRLDSIVYRLGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G I +K+KSK+LA V E+ L +D +P Y+S++ Sbjct: 120 VLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTES--LENKDQSSLPAYLSLDKAAFKG 177 Query: 178 TFVRIPSS---LKDVPYPVIMQPNLVVEFYS 205 V P +P PV + +++ EF S Sbjct: 178 ELVVAPELDQIASQLPLPVNV--SVICEFLS 206 >gi|315633478|ref|ZP_07888768.1| 30S ribosomal protein S4 [Aggregatibacter segnis ATCC 33393] gi|315477520|gb|EFU68262.1| 30S ribosomal protein S4 [Aggregatibacter segnis ATCC 33393] Length = 206 Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++KSK+ A + + +LAE ++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVISVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|330833751|ref|YP_004402576.1| 30S ribosomal protein S4 [Streptococcus suis ST3] gi|329307974|gb|AEB82390.1| 30S ribosomal protein S4 [Streptococcus suis ST3] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRLGLATTHRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|322387048|ref|ZP_08060660.1| 30S ribosomal protein S4 [Streptococcus infantis ATCC 700779] gi|321142132|gb|EFX37625.1| 30S ribosomal protein S4 [Streptococcus infantis ATCC 700779] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEFYNK 201 >gi|146319810|ref|YP_001199522.1| 30S ribosomal protein S4 [Streptococcus suis 05ZYH33] gi|146322003|ref|YP_001201714.1| 30S ribosomal protein S4 [Streptococcus suis 98HAH33] gi|223933695|ref|ZP_03625671.1| ribosomal protein S4 [Streptococcus suis 89/1591] gi|253752788|ref|YP_003025929.1| 30S ribosomal protein S4 [Streptococcus suis SC84] gi|253754613|ref|YP_003027754.1| 30S ribosomal protein S4 [Streptococcus suis P1/7] gi|253756546|ref|YP_003029686.1| 30S ribosomal protein S4 [Streptococcus suis BM407] gi|172045576|sp|A4W4M5|RS4_STRS2 RecName: Full=30S ribosomal protein S4 gi|172045584|sp|A4VYD3|RS4_STRSY RecName: Full=30S ribosomal protein S4 gi|145690616|gb|ABP91122.1| 30S ribosomal protein S4 [Streptococcus suis 05ZYH33] gi|145692809|gb|ABP93314.1| 30S ribosomal protein S4 [Streptococcus suis 98HAH33] gi|223897648|gb|EEF64033.1| ribosomal protein S4 [Streptococcus suis 89/1591] gi|251817077|emb|CAZ52729.1| 30S ribosomal protein S4 [Streptococcus suis SC84] gi|251819010|emb|CAZ56857.1| 30S ribosomal protein S4 [Streptococcus suis BM407] gi|251820859|emb|CAR47625.1| 30S ribosomal protein S4 [Streptococcus suis P1/7] gi|319759206|gb|ADV71148.1| 30S ribosomal protein S4 [Streptococcus suis JS14] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|288916882|ref|ZP_06411255.1| ribosomal protein S4 [Frankia sp. EUN1f] gi|288351767|gb|EFC85971.1| ribosomal protein S4 [Frankia sp. EUN1f] Length = 201 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 113/199 (56%), Gaps = 7/199 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K+ R IG L + R Y PG HG+ RK+ S + +LR KQ+++ Y ISEK+ Sbjct: 8 KLSRSIGMPLTDKAARYFENRPYPPGPHGRGRKTM-SPYKERLREKQRLRFQY-HISEKQ 65 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 R F +ADR G T H LI LE+RLD +V RA F TI+ ARQFV+HRH+ VNG V+ Sbjct: 66 LRRAFDQADRGTGRTGHLLIEDLETRLDAVVLRAGFAKTIYQARQFVSHRHIQVNGGRVD 125 Query: 130 IGSYRCKEGDVIEVKQKSKQLAS--VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +R + GDVI V +S+ +A ++ +Q P Y+ V+ +VA R PS + Sbjct: 126 RPGFRVQPGDVITVTTRSRTMAPFRIVAETQPTGAPPPAYLDVDRGALVAVLSRRPSRPE 185 Query: 188 DVPYPVIMQPNLVVEFYSR 206 PV+ LVVE+Y+R Sbjct: 186 ---IPVVCDEQLVVEYYAR 201 >gi|261405769|ref|YP_003242010.1| 30S ribosomal protein S4 [Paenibacillus sp. Y412MC10] gi|329922609|ref|ZP_08278161.1| ribosomal protein S4 [Paenibacillus sp. HGF5] gi|261282232|gb|ACX64203.1| ribosomal protein S4 [Paenibacillus sp. Y412MC10] gi|328941951|gb|EGG38234.1| ribosomal protein S4 [Paenibacillus sp. HGF5] Length = 200 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K + R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKE-LAKRPFPPGQHGPNQRRKVSNYGMQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A +G N + LESRLD +VYR F + ARQ V H H Sbjct: 60 MYG-LGEKQFRTLFNKATSMKGIAGENFMFLLESRLDNLVYRLGFSNSRAGARQLVAHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG+ V+I SY GDVI ++++S+ L+S+ EA LA R +P Y+ + M + Sbjct: 119 VTVNGKKVDIASYAVSTGDVIGLRERSRSLSSIKEA--LANRVHLPAYLEFDEAAMEGKY 176 Query: 180 VRIP--SSL-KDVPYPVIMQPNLVVEFYSR 206 +R+P S L +D+ +VEFY+R Sbjct: 177 IRLPERSELSQDI------DEKQIVEFYNR 200 >gi|313673441|ref|YP_004051552.1| SSU ribosomal protein s4p [Calditerrivibrio nitroreducens DSM 19672] gi|312940197|gb|ADR19389.1| SSU ribosomal protein S4P [Calditerrivibrio nitroreducens DSM 19672] Length = 208 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + + Y PG HGQ +K K S +G+QLR Sbjct: 1 MARYTGPSCKLCRREGMKLYLKGERCYKDKCGIEKKGYPPGQHGQLKK-KLSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG I E +FR F+ A +G T NL+ LE RLD VYRA F + ARQ Sbjct: 60 KQKVKRIYG-ILESQFRLYFERATNMKGITGENLLQLLERRLDNAVYRAGFASSRTQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNG+ VNI SY K GDVIE+++KS+ ++E+ + +E R E++S++ Sbjct: 119 LVRHNHFTVNGKKVNIPSYLLKVGDVIELREKSRDNKLIVESLETSEGRGTAEWLSIDKA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A R+P D+ Y + Q +L+VE YS+ Sbjct: 179 AFKAVVNRLPER-SDIGYDI--QEHLIVELYSK 208 >gi|242374009|ref|ZP_04819583.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W1] gi|242348260|gb|EES39862.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W1] Length = 200 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLNIIKESVEINNY-VPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|94500968|ref|ZP_01307493.1| ribosomal protein S4 [Oceanobacter sp. RED65] gi|94426908|gb|EAT11891.1| ribosomal protein S4 [Oceanobacter sp. RED65] Length = 206 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K V T+ PG+HG R + S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCKVETK---PGVHGAGR-GRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FRS +KEA R +G T NL+ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRSYYKEAARVKGATGENLLKLLETRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ + VNG++VNI SY K GDV+ +++K+K+ + A +L A+R +I V+ Sbjct: 116 QLVSHKAIAVNGQTVNIPSYNIKAGDVVSIREKAKEQLRIKGALELAAQRGDIAWIDVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +P + L+VE YS+ Sbjct: 176 KKMEGTFKAVPER---SELSAEINEQLIVELYSK 206 >gi|119478108|ref|ZP_01618187.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2143] gi|119448814|gb|EAW30057.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2143] Length = 206 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L+ + P++++ PG+HG RR + S +G+QLR KQK+++ YG + Sbjct: 10 KLSRREGTDLFLKSGVRPLDSKCKAEAPPGVHGARR-GRLSDYGVQLREKQKVRRIYG-V 67 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T +RQ V H+ +L+N Sbjct: 68 LEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRAESRQLVAHKSILIND 127 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS 184 + VNI SY+ K GD + V++K+K V +A +L A+R E+I VN NM T+ P Sbjct: 128 KVVNIASYQVKAGDKVSVREKAKSQLRVKQAIELAAQRGDAEWIEVNVSNMEGTYKAKPD 187 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 D+ + +L+VE YS+ Sbjct: 188 R-ADLSSEI--NESLIVELYSK 206 >gi|182412027|ref|YP_001817093.1| ribosomal protein S4 [Opitutus terrae PB90-1] gi|226699097|sp|B1ZNC4|RS4_OPITP RecName: Full=30S ribosomal protein S4 gi|177839241|gb|ACB73493.1| ribosomal protein S4 [Opitutus terrae PB90-1] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR G+ + G K+ RSY PG HG + + K S + + L KQK++ Sbjct: 1 MARYTGPTTRVSRRFGQQILGSGKA-FERRSYPPGQHGPKLRRKVSEYAVGLNEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR +F+ A + RG T + LE+RLD++VY + AARQFVNH H Sbjct: 60 IYG-LLERQFRRVFEIAKKERGVTGERFLQLLETRLDSVVYLLGLAKSRAAARQFVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLAS-VLEASQLAERDVPEYISVNHDNMVA 177 + VNG V+I SY K GD IEVK S+QLA+ LE +++ R+VP ++S+N + A Sbjct: 119 IRVNGHKVDIASYNVKAGDEIEVKNSPASRQLATRCLEENRI--RNVPGWLSMNAETFKA 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R+P+ +D I + L+VEFYSR Sbjct: 177 TVNRLPT--RDEMEQGINE-QLIVEFYSR 202 >gi|322831096|ref|YP_004211123.1| ribosomal protein S4 [Rahnella sp. Y9602] gi|321166297|gb|ADW71996.1| ribosomal protein S4 [Rahnella sp. Y9602] Length = 206 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD ++YR F T +RQ V Sbjct: 60 KVRRTYG-VLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVIYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P D+ + +L+VE YS+ Sbjct: 179 EGVFKRMPER-TDLSSDI--NEHLIVELYSK 206 >gi|113460232|ref|YP_718290.1| 30S ribosomal protein S4 [Haemophilus somnus 129PT] gi|123327085|sp|Q0I138|RS4_HAES1 RecName: Full=30S ribosomal protein S4 gi|112822275|gb|ABI24364.1| SSU ribosomal protein S4P [Haemophilus somnus 129PT] Length = 206 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR-------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQRERPTWLEVEA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|227891072|ref|ZP_04008877.1| 30S ribosomal protein S4 [Lactobacillus salivarius ATCC 11741] gi|227866946|gb|EEJ74367.1| 30S ribosomal protein S4 [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K ++ R Y PG HGQ R+ S +GLQLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGFSLSGTGKE-LSRRPYAPGQHGQDRRGSLSEYGLQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-LTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI ++++SK L V EA + VP +++ + + M T Sbjct: 119 HITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVSRVP-FVNFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVEFY+R Sbjct: 178 VRLPDREE---LDANIDEALVVEFYNR 201 >gi|148263164|ref|YP_001229870.1| 30S ribosomal protein S4 [Geobacter uraniireducens Rf4] gi|189045382|sp|A5GAU5|RS4_GEOUR RecName: Full=30S ribosomal protein S4 gi|146396664|gb|ABQ25297.1| SSU ribosomal protein S4P [Geobacter uraniireducens Rf4] Length = 208 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R +K S +G+QLR KQK+++ YG I E +FR F+ ADR +G Sbjct: 30 KCAIKRRNYPPGQHGQGR-TKTSDYGVQLREKQKVRRIYG-ILENQFRGYFERADRLKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD I YR F + ARQ V H H +NGR V I S + K GDV+E+ Sbjct: 88 TGENLLFLLERRLDNIAYRLGFASSRIEARQLVRHGHFTLNGRKVTIPSIQVKAGDVLEL 147 Query: 144 KQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+++A + E+ + + R +P+++ ++ +P+ +D+ P+ Q L+VE Sbjct: 148 REKSRKVACINESLEAVVRRGIPQWLELDKGAYKGAVKTLPAR-EDITMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|196228479|ref|ZP_03127346.1| ribosomal protein S4 [Chthoniobacter flavus Ellin428] gi|196227882|gb|EDY22385.1| ribosomal protein S4 [Chthoniobacter flavus Ellin428] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 11/210 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 M++ K +I RR G L+G P + ++YGPG+HG + + K S + + L KQK++ Sbjct: 1 MARYTGPKTRISRRFGVALFG-PSKALERKNYGPGMHGPKGSRRKQSEYAIALGEKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR F A RG T L+ LE+RLD ++YR F + AARQ V+H Sbjct: 60 YQYG-VLERQFRRYFTIASTRRGVTGEILLQLLETRLDNVIYRLGFANSRSAARQLVSHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMV 176 HV VNGR V++ S+ K GD I +K K S++LA+ LE +Q+ VPE+++V+ + Sbjct: 119 HVQVNGRKVDVSSFNVKAGDAITIKDKPQSRRLAAKNLELTQIT--PVPEWLTVDKEQFS 176 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIPS + P I+ L+VE YSR Sbjct: 177 GKVSRIPSRDEIAP---IVNEQLIVELYSR 203 >gi|313889497|ref|ZP_07823143.1| ribosomal protein S4 [Streptococcus pseudoporcinus SPIN 20026] gi|313122109|gb|EFR45202.1| ribosomal protein S4 [Streptococcus pseudoporcinus SPIN 20026] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + K S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRGKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|15672266|ref|NP_266440.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. lactis Il1403] gi|281490826|ref|YP_003352806.1| 50S ribosomal protein S4P [Lactococcus lactis subsp. lactis KF147] gi|26399484|sp|Q9CIS2|RS4_LACLA RecName: Full=30S ribosomal protein S4 gi|12723147|gb|AAK04382.1|AE006266_1 30S ribosomal protein S4 [Lactococcus lactis subsp. lactis Il1403] gi|281374584|gb|ADA64104.1| SSU ribosomal protein S4P [Lactococcus lactis subsp. lactis KF147] gi|326405863|gb|ADZ62934.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. lactis CV56] Length = 203 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRYGISLSGSGKE-IARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++FR+++ A + + G N ++ LE RLD +V+R T ARQFVNH Sbjct: 60 SYG-LSERQFRNLYIAATKVKEGTVGFNFMTLLEQRLDNVVFRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+R + G VI V++KS ++ ++LEA + A + ++S + D + T Sbjct: 119 HILVDGKRVDIPSFRVQPGQVISVREKSMKVPAILEAVE-ATKGRANFVSFDADKLEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I + L+VEFY++ Sbjct: 178 VRLPE--RDEINPEINEA-LIVEFYNK 201 >gi|289804412|ref|ZP_06535041.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 175 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 6/175 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG HG R K + S +G+QLR KQK+++ YG + E++FR+ +KEA R +G+T NL++ L Sbjct: 6 APGQHGAR-KPRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALL 63 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +VYR F T ARQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + Sbjct: 64 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 123 Query: 153 VLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V A +LAE R+ P ++ V+ M T+ R P D+ + +L+VE YS+ Sbjct: 124 VKAALELAEQREKPTWLEVDAGKMEGTYKRKPER-SDLSADI--NEHLIVELYSK 175 >gi|203288050|ref|YP_002223065.1| 30S ribosomal protein S4 [Borrelia recurrentis A1] gi|226697811|sp|B5RPW0|RS4_BORRA RecName: Full=30S ribosomal protein S4 gi|201085270|gb|ACH94844.1| 30S ribosomal protein S4 [Borrelia recurrentis A1] Length = 208 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+++ +K K+ RR G N++ +PK + ++ PG+HG+ R++K + +G QL KQK+ Sbjct: 1 MNRKSIAKGKLVRRFGVNIFEQPKYDKLLKKKTNPPGMHGRSRRTKVTEYGKQLIEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ ++FKEA R G T NL++ LE R+D IVYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNVFKEARRQHGVTGDNLLALLERRIDNIVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D+I+VK+K K + S +E + R +P++I VN D + Sbjct: 120 GIIILNGRRVTIPSITLRANDIIQVKEKDSFKKLVRSNIEKTSTL-RKLPDWIEVNADAL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R PS +D P + ++VE+YS+ Sbjct: 179 NVKIIRTPS--RD-EIPTLANEQMIVEYYSK 206 >gi|284992847|ref|YP_003411401.1| 30S ribosomal protein S4 [Geodermatophilus obscurus DSM 43160] gi|284066092|gb|ADB77030.1| ribosomal protein S4 [Geodermatophilus obscurus DSM 43160] Length = 208 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 110/186 (59%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R +SK S + LQLR KQK ++ YG + EK+FR ++EA++ G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRSKDSEYLLQLREKQKARRIYG-VLEKQFRGYYEEANKKSG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA F + ARQ V H H+ VNGR V+I SYR D+IE Sbjct: 87 KTGEVLLQILESRLDNVVYRAGFAESRDMARQLVRHGHIRVNGRKVDIPSYRVASNDIIE 146 Query: 143 VKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V +KS+++ + ++ ER VP ++ V + +P+ + D P +Q L+ Sbjct: 147 VAEKSRRMLPFEIAQARAGERPVPPWLEVISSQLRVLVHSVPARQVIDTP----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|327444033|gb|EGE90687.1| ribosomal protein S4 [Propionibacterium acnes HL043PA1] gi|327449433|gb|EGE96087.1| ribosomal protein S4 [Propionibacterium acnes HL043PA2] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RGRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VY A T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYLAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|116749016|ref|YP_845703.1| 30S ribosomal protein S4 [Syntrophobacter fumaroxidans MPOB] gi|152112270|sp|A0LIL6|RS4_SYNFM RecName: Full=30S ribosomal protein S4 gi|116698080|gb|ABK17268.1| SSU ribosomal protein S4P [Syntrophobacter fumaroxidans MPOB] Length = 208 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 111/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V R+Y PG HGQ R K S +GLQLR KQK+++ YG + EK+F++ FK ADR +G Sbjct: 30 KCAVERRNYPPGQHGQGR-GKFSDYGLQLREKQKIRRMYG-LVEKQFKTYFKHADRQKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T N ++ LE R+D VYR F + ARQ V H H LVNG+ VNI S+ + GD + V Sbjct: 88 TGTNFLTLLERRIDNTVYRLGFASSRAQARQLVRHSHFLVNGKKVNIPSFLLRPGDSVSV 147 Query: 144 KQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + S+QL + EA + + R +P ++ ++ F +P+ +++ PV Q LVVE Sbjct: 148 VEGSRQLQMINEAMEAMPRRGLPPWLELDKAKYEGVFKTLPTR-EEMNLPV--QEQLVVE 204 Query: 203 FYSR 206 FYS+ Sbjct: 205 FYSK 208 >gi|329117696|ref|ZP_08246413.1| ribosomal protein S4 [Streptococcus parauberis NCFD 2020] gi|326908101|gb|EGE55015.1| ribosomal protein S4 [Streptococcus parauberis NCFD 2020] Length = 203 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQAIKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDTEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|158318038|ref|YP_001510546.1| RNA-binding S4 domain-containing protein [Frankia sp. EAN1pec] gi|158113443|gb|ABW15640.1| RNA-binding S4 domain protein [Frankia sp. EAN1pec] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 113/199 (56%), Gaps = 7/199 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K+ R IG L + R Y PG HG+ RK+ S + +LR KQ+++ Y ISEK+ Sbjct: 8 KLSRSIGLPLTDKAARYFENRPYPPGPHGRGRKTM-SPYKERLREKQRLRFQY-HISEKQ 65 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 R F EADR G T H LI LE+RLD +V RA F TI+ ARQFV+HRHV VN V+ Sbjct: 66 LRRAFDEADRGAGRTGHLLIEDLETRLDAVVLRAGFAKTIYQARQFVSHRHVQVNSSRVD 125 Query: 130 IGSYRCKEGDVIEVKQKSKQLAS--VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 YR + GDV+ + +S+ +A ++ +Q A P Y+ V+ +VA R P+ + Sbjct: 126 RPGYRVQPGDVVTIAGRSRPMAPFRIVAETQPAGTAPPAYLDVDRTALVAVLSRRPTRPE 185 Query: 188 DVPYPVIMQPNLVVEFYSR 206 PV+ LVVE+Y+R Sbjct: 186 ---IPVVCDEQLVVEYYAR 201 >gi|90414980|ref|ZP_01222942.1| 30S ribosomal protein S4 [Photobacterium profundum 3TCK] gi|161936335|ref|YP_128585.2| 30S ribosomal protein S4 [Photobacterium profundum SS9] gi|152031675|sp|Q6LV92|RS4_PHOPR RecName: Full=30S ribosomal protein S4 gi|90323919|gb|EAS40519.1| 30S ribosomal protein S4 [Photobacterium profundum 3TCK] Length = 206 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRTYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG VN+ S++ DV+ +++K+K A + A ++A +R++P ++ V++ + Sbjct: 119 SHKAILVNGTVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNSKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P D+ + +L+VE YS+ Sbjct: 179 EGTFKRLPER-SDLSADI--NEHLIVELYSK 206 >gi|90962052|ref|YP_535968.1| 30S ribosomal protein S4 [Lactobacillus salivarius UCC118] gi|301300890|ref|ZP_07207062.1| ribosomal protein S4 [Lactobacillus salivarius ACS-116-V-Col5a] gi|122448841|sp|Q1WT66|RS4_LACS1 RecName: Full=30S ribosomal protein S4 gi|90821246|gb|ABD99885.1| SSU ribosomal protein S4P [Lactobacillus salivarius UCC118] gi|300214749|gb|ADJ79165.1| 30S ribosomal protein S4 [Lactobacillus salivarius CECT 5713] gi|300851489|gb|EFK79201.1| ribosomal protein S4 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K ++ R Y PG HGQ R+ S +GLQLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGFSLSGTGKE-LSRRPYAPGQHGQDRRGSLSEYGLQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-LTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI ++++SK L V EA + VP +++ + + M T Sbjct: 119 HITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVGRVP-FVNFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVEFY+R Sbjct: 178 VRLPDREE---LDANIDEALVVEFYNR 201 >gi|29348111|ref|NP_811614.1| 30S ribosomal protein S4 [Bacteroides thetaiotaomicron VPI-5482] gi|253569617|ref|ZP_04847027.1| 30S ribosomal protein S4 [Bacteroides sp. 1_1_6] gi|298386205|ref|ZP_06995762.1| ribosomal protein S4 [Bacteroides sp. 1_1_14] gi|41017839|sp|Q8A4A1|RS4_BACTN RecName: Full=30S ribosomal protein S4 gi|29340014|gb|AAO77808.1| 30S ribosomal protein S4 [Bacteroides thetaiotaomicron VPI-5482] gi|251841636|gb|EES69717.1| 30S ribosomal protein S4 [Bacteroides sp. 1_1_6] gi|298261433|gb|EFI04300.1| ribosomal protein S4 [Bacteroides sp. 1_1_14] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G VNI S+ K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGEVVNIPSFAVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDETSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 MLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|253999473|ref|YP_003051536.1| 30S ribosomal protein S4 [Methylovorus sp. SIP3-4] gi|253986152|gb|ACT51009.1| ribosomal protein S4 [Methylovorus sp. SIP3-4] Length = 205 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 MS+ + K+ R +G +L G + + R PG HG + + K S FG++L KQK++ Sbjct: 1 MSRFTGPRLKVMRALGVDLPGLSRKSIEQRPTPPGQHGAKAVRRKKSDFGIKLMEKQKLR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++ R + +A R + T L+ LE RLD +V+RA F PTI AARQ V+HR Sbjct: 61 FNYG-LSERQLRRLMVDARRGKAPTGETLLQLLERRLDNVVFRAGFAPTIAAARQLVSHR 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ +NG+ V+I S R + GD I +K S Q+ V E + PE++S + VA Sbjct: 120 HLQLNGKVVSIPSIRLRVGDEISLKPASAQIPIVNETLKDMPLIRPEWLSWDDTQRVARI 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +P++ +DVP+PV +Q VVE+Y+ Sbjct: 180 SHLPAA-EDVPFPVDVQQ--VVEYYA 202 >gi|163942386|ref|YP_001647270.1| 30S ribosomal protein S4 [Bacillus weihenstephanensis KBAB4] gi|229013860|ref|ZP_04170988.1| 30S ribosomal protein S4 [Bacillus mycoides DSM 2048] gi|229062341|ref|ZP_04199659.1| 30S ribosomal protein S4 [Bacillus cereus AH603] gi|229135493|ref|ZP_04264279.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST196] gi|229169382|ref|ZP_04297092.1| 30S ribosomal protein S4 [Bacillus cereus AH621] gi|226697804|sp|A9VKG5|RS4_BACWK RecName: Full=30S ribosomal protein S4 gi|163864583|gb|ABY45642.1| ribosomal protein S4 [Bacillus weihenstephanensis KBAB4] gi|228614145|gb|EEK71260.1| 30S ribosomal protein S4 [Bacillus cereus AH621] gi|228647958|gb|EEL04007.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST196] gi|228716946|gb|EEL68630.1| 30S ribosomal protein S4 [Bacillus cereus AH603] gi|228747529|gb|EEL97404.1| 30S ribosomal protein S4 [Bacillus mycoides DSM 2048] Length = 200 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 ITVDGARVDIPSYRVKPNQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 R---HAERSELAAEINEALIVEFYSR 200 >gi|150008959|ref|YP_001303702.1| 30S ribosomal protein S4 [Parabacteroides distasonis ATCC 8503] gi|149937383|gb|ABR44080.1| 30S ribosomal protein S4 [Parabacteroides distasonis ATCC 8503] Length = 172 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 + V+G VNI SY K G VI V++KSK + + +A Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADA 154 >gi|314924148|gb|EFS87979.1| ribosomal protein S4 [Propionibacterium acnes HL001PA1] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG R ++K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHG-RGRTKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDHPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|224543759|ref|ZP_03684298.1| hypothetical protein CATMIT_02975 [Catenibacterium mitsuokai DSM 15897] gi|224523327|gb|EEF92432.1| hypothetical protein CATMIT_02975 [Catenibacterium mitsuokai DSM 15897] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 11/199 (5%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RR+G ++ K +N R Y PG HGQ+R K + +GLQL KQK++ YG I+EK+ Sbjct: 10 KKSRRLGFSVLENGKE-LNKRPYAPGQHGQKR-HKSTEYGLQLAEKQKVRHMYG-INEKQ 66 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 F + F A + G T N + LESRLD +VYR F T AARQ VNH H+L+NG + Sbjct: 67 FHNTFDRASKMEGVTGANFLFLLESRLDNVVYRMGFATTRRAARQLVNHGHILLNGIKTD 126 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIP--SSLK 187 I S R GDVI VK++S+QL V++ + A+ P ++ V+ + F R+P S L Sbjct: 127 IPSCRVNPGDVITVKERSQQL-DVIKTALEAQTHTPGFVEVDAEKRTGKFTRLPERSELN 185 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + L+VE+Y+R Sbjct: 186 QE-----INEQLIVEYYNR 199 >gi|85713166|ref|ZP_01044198.1| 30S ribosomal protein S4 [Idiomarina baltica OS145] gi|85693036|gb|EAQ31002.1| 30S ribosomal protein S4 [Idiomarina baltica OS145] Length = 206 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RR + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIET---APGQHGARR-GRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARIKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ V+VNG+ VNI S+ + DV+ V++K+K+ A + A +L+E R+ P ++ V+ Sbjct: 116 QLVSHKAVVVNGQVVNIPSFMVRPEDVVSVREKAKKQARISAALELSEQREKPVWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 SKMEGQFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|283455919|ref|YP_003360483.1| 30S ribosomal protein S4 [Bifidobacterium dentium Bd1] gi|306822876|ref|ZP_07456252.1| 30S ribosomal protein S4 [Bifidobacterium dentium ATCC 27679] gi|309801331|ref|ZP_07695460.1| ribosomal protein S4 [Bifidobacterium dentium JCVIHMP022] gi|283102553|gb|ADB09659.1| 30S ribosomal protein S4 [Bifidobacterium dentium Bd1] gi|304553508|gb|EFM41419.1| 30S ribosomal protein S4 [Bifidobacterium dentium ATCC 27679] gi|308222220|gb|EFO78503.1| ribosomal protein S4 [Bifidobacterium dentium JCVIHMP022] Length = 208 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T + +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGQTGNAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKAKSQTMVPFQIAAEGVHRDVLPAVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +++P V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEIPVQVNIQ--YVVEFYAR 208 >gi|15605357|ref|NP_220143.1| 30S ribosomal protein S4 [Chlamydia trachomatis D/UW-3/CX] gi|76789365|ref|YP_328451.1| 30S ribosomal protein S4 [Chlamydia trachomatis A/HAR-13] gi|237803055|ref|YP_002888249.1| 30S ribosomal protein S4 [Chlamydia trachomatis B/Jali20/OT] gi|237804976|ref|YP_002889130.1| 30S ribosomal protein S4 [Chlamydia trachomatis B/TZ1A828/OT] gi|7388192|sp|O84631|RS4_CHLTR RecName: Full=30S ribosomal protein S4 gi|90101682|sp|Q3KL69|RS4_CHLTA RecName: Full=30S ribosomal protein S4 gi|3329073|gb|AAC68230.1| S4 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX] gi|76167895|gb|AAX50903.1| SSU ribosomal protein S4P [Chlamydia trachomatis A/HAR-13] gi|231273276|emb|CAX10191.1| SSU ribosomal protein S4P [Chlamydia trachomatis B/TZ1A828/OT] gi|231274289|emb|CAX11084.1| SSU ribosomal protein S4P [Chlamydia trachomatis B/Jali20/OT] gi|296437091|gb|ADH19261.1| 30S ribosomal protein S4 [Chlamydia trachomatis G/11222] gi|297748756|gb|ADI51302.1| SSU ribosomal protein S4P [Chlamydia trachomatis D-EC] gi|297749636|gb|ADI52314.1| SSU ribosomal protein S4P [Chlamydia trachomatis D-LC] Length = 209 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLLRKPNPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ +KE +G+ + + E RLD IVYR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAYKEVVNKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G I +K+KSK+LA V E+ L +D +P Y+S++ Sbjct: 120 VLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTES--LENKDQSSLPAYLSLDKAAFKG 177 Query: 178 TFVRIPSS---LKDVPYPVIMQPNLVVEFYS 205 V P +P PV + +++ EF S Sbjct: 178 ELVVAPELDQIASQLPLPVNV--SVICEFLS 206 >gi|160883039|ref|ZP_02064042.1| hypothetical protein BACOVA_01002 [Bacteroides ovatus ATCC 8483] gi|237717425|ref|ZP_04547906.1| 30S ribosomal protein S4 [Bacteroides sp. D1] gi|237718717|ref|ZP_04549198.1| 30S ribosomal protein S4 [Bacteroides sp. 2_2_4] gi|260175442|ref|ZP_05761854.1| 30S ribosomal protein S4 [Bacteroides sp. D2] gi|262406190|ref|ZP_06082740.1| ribosomal protein S4 [Bacteroides sp. 2_1_22] gi|293372094|ref|ZP_06618485.1| ribosomal protein S4 [Bacteroides ovatus SD CMC 3f] gi|294644083|ref|ZP_06721860.1| ribosomal protein S4 [Bacteroides ovatus SD CC 2a] gi|294806543|ref|ZP_06765382.1| ribosomal protein S4 [Bacteroides xylanisolvens SD CC 1b] gi|298483090|ref|ZP_07001271.1| ribosomal protein S4 [Bacteroides sp. D22] gi|299144598|ref|ZP_07037666.1| ribosomal protein S4 [Bacteroides sp. 3_1_23] gi|315923671|ref|ZP_07919911.1| 30S ribosomal protein S4 [Bacteroides sp. D2] gi|156111511|gb|EDO13256.1| hypothetical protein BACOVA_01002 [Bacteroides ovatus ATCC 8483] gi|229443408|gb|EEO49199.1| 30S ribosomal protein S4 [Bacteroides sp. D1] gi|229451849|gb|EEO57640.1| 30S ribosomal protein S4 [Bacteroides sp. 2_2_4] gi|262357065|gb|EEZ06155.1| ribosomal protein S4 [Bacteroides sp. 2_1_22] gi|292632886|gb|EFF51473.1| ribosomal protein S4 [Bacteroides ovatus SD CMC 3f] gi|292640607|gb|EFF58848.1| ribosomal protein S4 [Bacteroides ovatus SD CC 2a] gi|294446238|gb|EFG14866.1| ribosomal protein S4 [Bacteroides xylanisolvens SD CC 1b] gi|295085403|emb|CBK66926.1| SSU ribosomal protein S4P [Bacteroides xylanisolvens XB1A] gi|298270834|gb|EFI12414.1| ribosomal protein S4 [Bacteroides sp. D22] gi|298515089|gb|EFI38970.1| ribosomal protein S4 [Bacteroides sp. 3_1_23] gi|313697546|gb|EFS34381.1| 30S ribosomal protein S4 [Bacteroides sp. D2] Length = 201 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G VNI S+ K G +I V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGEVVNIPSFAVKPGQLIGVRERSKSLEVI--ANSLAGFNHSKYAWLEWDEASKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 MLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|157150371|ref|YP_001451346.1| 30S ribosomal protein S4 [Streptococcus gordonii str. Challis substr. CH1] gi|262283690|ref|ZP_06061455.1| ribosomal protein S4 [Streptococcus sp. 2_1_36FAA] gi|172045598|sp|A8AZY6|RS4_STRGC RecName: Full=30S ribosomal protein S4 gi|157075165|gb|ABV09848.1| ribosomal protein S4 [Streptococcus gordonii str. Challis substr. CH1] gi|262260747|gb|EEY79448.1| ribosomal protein S4 [Streptococcus sp. 2_1_36FAA] Length = 203 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|119773378|ref|YP_926118.1| 30S ribosomal protein S4 [Shewanella amazonensis SB2B] gi|152112259|sp|A1S242|RS4_SHEAM RecName: Full=30S ribosomal protein S4 gi|119765878|gb|ABL98448.1| SSU ribosomal protein S4P [Shewanella amazonensis SB2B] Length = 206 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|26399364|sp|P59132|RS4_SHIFL RecName: Full=30S ribosomal protein S4 Length = 206 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++V GR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVPGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRKPER-SDLSADI--NEHLIVELYSK 206 >gi|315604259|ref|ZP_07879325.1| 30S ribosomal protein S4 [Actinomyces sp. oral taxon 180 str. F0310] gi|315313965|gb|EFU62016.1| 30S ribosomal protein S4 [Actinomyces sp. oral taxon 180 str. F0310] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/181 (43%), Positives = 107/181 (59%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ + S + ++L+ KQ+++ YG I E + R F+EA R+ G T NL+ Sbjct: 31 RPYGPGEHGRTRRRQDSDYAVRLKEKQRLRAQYG-IRESQLRRAFEEARRTAGLTGENLV 89 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD +V RA F TI ARQ V HRH+LV+G+ V+ S+R K G I+VK KS+ Sbjct: 90 ELLEMRLDALVLRAGFSRTIQQARQVVVHRHILVDGKIVDRPSFRVKPGQTIQVKPKSQT 149 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 A++ RD VPEY+ V+ + AT VR P K PV + +VVE YS Sbjct: 150 TVPFEIAAEGIHRDVLPAVPEYLDVDLARLKATLVRRP---KRAEVPVTVDVQMVVEHYS 206 Query: 206 R 206 R Sbjct: 207 R 207 >gi|209521361|ref|ZP_03270074.1| ribosomal protein S4 [Burkholderia sp. H160] gi|209498181|gb|EDZ98323.1| ribosomal protein S4 [Burkholderia sp. H160] Length = 207 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V H+ + VNG NI S + K GDV+ V+++ ++ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVGHKAITVNGVVSNIPSMQVKAGDVVAVREQKRKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P D+ + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER-SDIAGDI--NESLIVELYSR 207 >gi|162451363|ref|YP_001613730.1| 30S ribosomal protein S4 [Sorangium cellulosum 'So ce 56'] gi|161161945|emb|CAN93250.1| 30S ribosomal protein S4 [Sorangium cellulosum 'So ce 56'] Length = 203 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ R +G L G R Y PG HGQ RK K S F L+LR KQK++ Sbjct: 1 MSRYTGPRVKVMRALGVELPGLSARKTERRPYPPGQHGQARK-KLSEFALRLREKQKVRL 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +++ + +++ EA RS LI LE RLD +++RA F TI AARQ V H H Sbjct: 60 NYG-LTDTQLKTLMLEARRSDLAAGTKLIELLERRLDNVIFRAGFARTIPAARQLVAHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VL+NG+ V+I SYR G+ + V +K + +V+E + + P +++V+ D A Sbjct: 119 VLINGKRVDIPSYRVTIGETVSVSEKRRDHRTVVEGLARTDMEAPTWLAVDKDARQARVA 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +P+P+ +Q L++E+YS+ Sbjct: 179 ALPDE-TSIPFPIAVQ--LIIEYYSQ 201 >gi|126176331|ref|YP_001052480.1| 30S ribosomal protein S4 [Shewanella baltica OS155] gi|152998773|ref|YP_001364454.1| 30S ribosomal protein S4 [Shewanella baltica OS185] gi|160873349|ref|YP_001552665.1| 30S ribosomal protein S4 [Shewanella baltica OS195] gi|217975177|ref|YP_002359928.1| 30S ribosomal protein S4 [Shewanella baltica OS223] gi|304412788|ref|ZP_07394390.1| ribosomal protein S4 [Shewanella baltica OS183] gi|307307452|ref|ZP_07587187.1| ribosomal protein S4 [Shewanella baltica BA175] gi|171704521|sp|A6WHV2|RS4_SHEB8 RecName: Full=30S ribosomal protein S4 gi|171769980|sp|A3DA48|RS4_SHEB5 RecName: Full=30S ribosomal protein S4 gi|189045397|sp|A9KWC5|RS4_SHEB9 RecName: Full=30S ribosomal protein S4 gi|254764609|sp|B8EBI1|RS4_SHEB2 RecName: Full=30S ribosomal protein S4 gi|125999536|gb|ABN63611.1| SSU ribosomal protein S4P [Shewanella baltica OS155] gi|151363391|gb|ABS06391.1| ribosomal protein S4 [Shewanella baltica OS185] gi|160858871|gb|ABX47405.1| ribosomal protein S4 [Shewanella baltica OS195] gi|217500312|gb|ACK48505.1| ribosomal protein S4 [Shewanella baltica OS223] gi|304348868|gb|EFM13284.1| ribosomal protein S4 [Shewanella baltica OS183] gi|306910240|gb|EFN40673.1| ribosomal protein S4 [Shewanella baltica BA175] gi|315265577|gb|ADT92430.1| ribosomal protein S4 [Shewanella baltica OS678] Length = 206 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARTKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRVPER-SDLSAEINEQ--LIVELYSK 206 >gi|318607721|emb|CBY29219.1| SSU ribosomal protein S4p (S9e) [Yersinia enterocolitica subsp. palearctica Y11] Length = 206 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAIKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|22127884|ref|NP_671307.1| 30S ribosomal protein S4 [Yersinia pestis KIM 10] gi|45440091|ref|NP_991630.1| 30S ribosomal protein S4 [Yersinia pestis biovar Microtus str. 91001] gi|51597964|ref|YP_072155.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 32953] gi|108809231|ref|YP_653147.1| 30S ribosomal protein S4 [Yersinia pestis Antiqua] gi|108813996|ref|YP_649763.1| 30S ribosomal protein S4 [Yersinia pestis Nepal516] gi|123444074|ref|YP_001008044.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145597474|ref|YP_001161549.1| 30S ribosomal protein S4 [Yersinia pestis Pestoides F] gi|150260719|ref|ZP_01917447.1| 30S ribosomal protein S4 [Yersinia pestis CA88-4125] gi|153947510|ref|YP_001402839.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 31758] gi|162420100|ref|YP_001605196.1| 30S ribosomal protein S4 [Yersinia pestis Angola] gi|165927897|ref|ZP_02223729.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. F1991016] gi|166010539|ref|ZP_02231437.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213178|ref|ZP_02239213.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. B42003004] gi|167398630|ref|ZP_02304154.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419283|ref|ZP_02311036.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425684|ref|ZP_02317437.1| ribosomal protein S4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022568|ref|YP_001719073.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis YPIII] gi|186897160|ref|YP_001874272.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis PB1/+] gi|218927439|ref|YP_002345314.1| 30S ribosomal protein S4 [Yersinia pestis CO92] gi|229836285|ref|ZP_04456452.1| 30S ribosomal subunit protein S4 [Yersinia pestis Pestoides A] gi|229840091|ref|ZP_04460250.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842173|ref|ZP_04462328.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. India 195] gi|229904527|ref|ZP_04519638.1| 30S ribosomal subunit protein S4 [Yersinia pestis Nepal516] gi|238752667|ref|ZP_04614138.1| 30S ribosomal protein S4 [Yersinia rohdei ATCC 43380] gi|238754196|ref|ZP_04615554.1| 30S ribosomal protein S4 [Yersinia ruckeri ATCC 29473] gi|238758784|ref|ZP_04619958.1| 30S ribosomal protein S4 [Yersinia aldovae ATCC 35236] gi|238783187|ref|ZP_04627213.1| 30S ribosomal protein S4 [Yersinia bercovieri ATCC 43970] gi|238797220|ref|ZP_04640721.1| 30S ribosomal protein S4 [Yersinia mollaretii ATCC 43969] gi|270488255|ref|ZP_06205329.1| ribosomal protein S4 [Yersinia pestis KIM D27] gi|294502308|ref|YP_003566370.1| 30S ribosomal protein S4 [Yersinia pestis Z176003] gi|332163237|ref|YP_004299814.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|26399435|sp|Q8ZJ88|RS4_YERPE RecName: Full=30S ribosomal protein S4 gi|61215490|sp|Q664U5|RS4_YERPS RecName: Full=30S ribosomal protein S4 gi|123245525|sp|Q1C2X0|RS4_YERPA RecName: Full=30S ribosomal protein S4 gi|123372820|sp|Q1CCW7|RS4_YERPN RecName: Full=30S ribosomal protein S4 gi|152112273|sp|A1JS02|RS4_YERE8 RecName: Full=30S ribosomal protein S4 gi|171769160|sp|A7FNL1|RS4_YERP3 RecName: Full=30S ribosomal protein S4 gi|172044482|sp|A4TH14|RS4_YERPP RecName: Full=30S ribosomal protein S4 gi|226703313|sp|B2K513|RS4_YERPB RecName: Full=30S ribosomal protein S4 gi|226703314|sp|A9R917|RS4_YERPG RecName: Full=30S ribosomal protein S4 gi|226703315|sp|B1JJG9|RS4_YERPY RecName: Full=30S ribosomal protein S4 gi|21961020|gb|AAM87558.1|AE014003_16 30S ribosomal subunit protein S4 [Yersinia pestis KIM 10] gi|45434946|gb|AAS60507.1| 30S ribosomal protein S4 [Yersinia pestis biovar Microtus str. 91001] gi|51591246|emb|CAH22912.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 32953] gi|108777644|gb|ABG20163.1| SSU ribosomal protein S4P [Yersinia pestis Nepal516] gi|108781144|gb|ABG15202.1| SSU ribosomal protein S4P [Yersinia pestis Antiqua] gi|115346050|emb|CAL18916.1| 30S ribosomal protein S4 [Yersinia pestis CO92] gi|122091035|emb|CAL13918.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145209170|gb|ABP38577.1| SSU ribosomal protein S4P [Yersinia pestis Pestoides F] gi|149290127|gb|EDM40204.1| 30S ribosomal protein S4 [Yersinia pestis CA88-4125] gi|152959005|gb|ABS46466.1| ribosomal protein S4 [Yersinia pseudotuberculosis IP 31758] gi|162352915|gb|ABX86863.1| ribosomal protein S4 [Yersinia pestis Angola] gi|165920173|gb|EDR37474.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. F1991016] gi|165990629|gb|EDR42930.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205476|gb|EDR49956.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963277|gb|EDR59298.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051134|gb|EDR62542.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055374|gb|EDR65168.1| ribosomal protein S4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749102|gb|ACA66620.1| ribosomal protein S4 [Yersinia pseudotuberculosis YPIII] gi|186700186|gb|ACC90815.1| ribosomal protein S4 [Yersinia pseudotuberculosis PB1/+] gi|229678645|gb|EEO74750.1| 30S ribosomal subunit protein S4 [Yersinia pestis Nepal516] gi|229690483|gb|EEO82537.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. India 195] gi|229696457|gb|EEO86504.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706353|gb|EEO92360.1| 30S ribosomal subunit protein S4 [Yersinia pestis Pestoides A] gi|238703081|gb|EEP95624.1| 30S ribosomal protein S4 [Yersinia aldovae ATCC 35236] gi|238707692|gb|EEQ00052.1| 30S ribosomal protein S4 [Yersinia ruckeri ATCC 29473] gi|238709094|gb|EEQ01341.1| 30S ribosomal protein S4 [Yersinia rohdei ATCC 43380] gi|238715983|gb|EEQ07969.1| 30S ribosomal protein S4 [Yersinia bercovieri ATCC 43970] gi|238718857|gb|EEQ10672.1| 30S ribosomal protein S4 [Yersinia mollaretii ATCC 43969] gi|262360388|gb|ACY57109.1| 30S ribosomal protein S4 [Yersinia pestis D106004] gi|262364338|gb|ACY60895.1| 30S ribosomal protein S4 [Yersinia pestis D182038] gi|270336759|gb|EFA47536.1| ribosomal protein S4 [Yersinia pestis KIM D27] gi|294352767|gb|ADE63108.1| 30S ribosomal protein S4 [Yersinia pestis Z176003] gi|320013366|gb|ADV96937.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325667467|gb|ADZ44111.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861830|emb|CBX72001.1| 30S ribosomal protein S4 [Yersinia enterocolitica W22703] Length = 206 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAVKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|108804948|ref|YP_644885.1| 30S ribosomal protein S4P [Rubrobacter xylanophilus DSM 9941] gi|123068978|sp|Q1AU55|RS4_RUBXD RecName: Full=30S ribosomal protein S4 gi|108766191|gb|ABG05073.1| SSU ribosomal protein S4P [Rubrobacter xylanophilus DSM 9941] Length = 200 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + + DRR G L K+P+ + Y PG HG+ R+ + Y GL+L KQK + Sbjct: 1 MARYTGPRGRRDRRAGVMLSSMRKNPLEKKPYPPGEHGRDRQRQTEY-GLRLMEKQKARW 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG +SE++FR ++EA R G + NL+ +E R+D +VYR F + ARQ V H H Sbjct: 60 YYG-VSERQFRRAYEEAIRQPGVSGENLLRLMELRMDNVVYRMGFATSRPQARQLVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 L+NGR NI S K GDVI V+ KS++L + EA + VP ++ +H+N + Sbjct: 119 FLLNGRKHNIPSATLKPGDVITVRDKSRRLQPIQEAVEQVV-AVPAWLEADHENFTGRVL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS ++ PV Q L++EFYSR Sbjct: 178 HTPSR-DEIDAPVEEQ--LIIEFYSR 200 >gi|302036692|ref|YP_003797014.1| 30S ribosomal protein S4 [Candidatus Nitrospira defluvii] gi|300604756|emb|CBK41088.1| 30S ribosomal protein S4 [Candidatus Nitrospira defluvii] Length = 208 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K ++ RR GE L+ + K + RSY PG HGQ R+ + S + LQLR Sbjct: 1 MAKYSGPVCRLCRREGEKLFLKGSRCMTEKCAIERRSYPPGQHGQARQ-RTSDYSLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR IF+ A+R G T L+ LE RLD +VYR F + ARQ Sbjct: 60 KQKLKRIYG-LQECQFRGIFERAERQAGVTGDTLLRLLECRLDNVVYRLGFGASRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHD 173 VNH H+++NGR V K GD +EV+QKS++L + A + + R +PE++ ++ Sbjct: 119 LVNHGHMMINGRKVKAPGALVKAGDSVEVRQKSRELLPIQGALAAVDGRGIPEWLELDRT 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ + + PV Q +VVE YSR Sbjct: 179 ACKGTIRSLPTK-EHIVLPVNEQ--MVVELYSR 208 >gi|152112269|sp|A3CRA2|RS4_STRSV RecName: Full=30S ribosomal protein S4 gi|324991900|gb|EGC23823.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK405] gi|324996210|gb|EGC28120.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK678] gi|327458525|gb|EGF04875.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1] gi|327490386|gb|EGF22172.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1058] Length = 203 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEFYNK 201 >gi|238921420|ref|YP_002934935.1| 30S ribosomal protein S4 [Edwardsiella ictaluri 93-146] gi|269140550|ref|YP_003297251.1| 30S ribosomal protein S4 [Edwardsiella tarda EIB202] gi|294638030|ref|ZP_06716290.1| ribosomal protein S4 [Edwardsiella tarda ATCC 23685] gi|259495277|sp|C5BF28|RS4_EDWI9 RecName: Full=30S ribosomal protein S4 gi|238870989|gb|ACR70700.1| 30S ribosomal protein S4 (BS4) [Edwardsiella ictaluri 93-146] gi|267986211|gb|ACY86040.1| 30S ribosomal protein S4 [Edwardsiella tarda EIB202] gi|291088822|gb|EFE21383.1| ribosomal protein S4 [Edwardsiella tarda ATCC 23685] gi|304560335|gb|ADM42999.1| SSU ribosomal protein S4p (S9e) [Edwardsiella tarda FL6-60] Length = 206 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ V++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P D+ + +L+VE YS+ Sbjct: 179 EGVFKRQPER-SDLSADI--NEHLIVELYSK 206 >gi|183601528|ref|ZP_02962898.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis HN019] gi|219683934|ref|YP_002470317.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis AD011] gi|241190973|ref|YP_002968367.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196379|ref|YP_002969934.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|259495270|sp|B8DUR2|RS4_BIFA0 RecName: Full=30S ribosomal protein S4 gi|183219134|gb|EDT89775.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis HN019] gi|219621584|gb|ACL29741.1| ribosomal protein S4 [Bifidobacterium animalis subsp. lactis AD011] gi|240249365|gb|ACS46305.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250933|gb|ACS47872.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793962|gb|ADG33497.1| 30S ribosomal protein S4 [Bifidobacterium animalis subsp. lactis V9] Length = 206 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Sbjct: 1 MSNRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRAESDYAVRLREKQRLRA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISEK+ R+ +++ + G T + +++ LE+RLD +V RA T ARQFV HRH Sbjct: 61 QYG-ISEKQLRAAYEKGTHTAGQTGNAMLTDLETRLDALVLRAGIARTTAQARQFVVHRH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMV 176 +LV+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ Sbjct: 120 ILVDGNIVDRPSYRVKPGQTIQVKPKSQTMVPFQIAAEGTHRDVLPPVPGYLDVNLASLK 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT R P +++P V +Q VVEFY+R Sbjct: 180 ATLTRKPEP-EEIPVQVNIQ--YVVEFYAR 206 >gi|301155354|emb|CBW14820.1| 30S ribosomal subunit protein S4 [Haemophilus parainfluenzae T3T1] Length = 206 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDIAPGQHGAR-KPRLSDYGSQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE R+ P ++ V+ M Sbjct: 119 SHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDSAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P D+ + +L+VE YS+ Sbjct: 179 EGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|323350794|ref|ZP_08086453.1| 30S ribosomal protein S4 [Streptococcus sanguinis VMC66] gi|322122968|gb|EFX94671.1| 30S ribosomal protein S4 [Streptococcus sanguinis VMC66] gi|325689321|gb|EGD31327.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK115] gi|325695727|gb|EGD37626.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK150] Length = 245 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 43 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 101 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 102 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 160 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 161 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 219 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 220 TRLPE--RDEINPEINEA-LIVEFYNK 243 >gi|150020872|ref|YP_001306226.1| 30S ribosomal protein S4 [Thermosipho melanesiensis BI429] gi|172048669|sp|A6LLP0|RS4_THEM4 RecName: Full=30S ribosomal protein S4 gi|149793393|gb|ABR30841.1| RNA-binding S4 domain protein [Thermosipho melanesiensis BI429] Length = 209 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K + R + PG HG R K K + +G+QLRA Sbjct: 1 MARYTGPQCKLCRREGMKLYLKGERCFTDKCAFDRRPFAPGDHG-REKKKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ MK+ YG + E +FR +++A + GDT NL+ +E RLD +VYR F ARQ Sbjct: 60 KQTMKRIYG-VLEAQFRRYYEKAAKKSGDTRENLVVQVERRLDNVVYRLGFAVNRTTARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H H LVNG+ VNI SY+ + GDVIEV++KSK + + A +L +++ ++SV+ + Sbjct: 119 LVSHGHFLVNGKKVNIPSYQVRPGDVIEVREKSKDILPIKNAIELNKDKNRMPWLSVDFE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N + R P + + PV +Q ++E YSR Sbjct: 179 NYKGVYERHPKLEEVIDLPVDVQA--IIELYSR 209 >gi|46911985|emb|CAG18783.1| putative ribosomal protein S4 [Photobacterium profundum SS9] Length = 202 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG RR + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARR-GRLSDYGVQLREKQKVRRTYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V+H+ +LV Sbjct: 63 -VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLVSHKAILV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRI 182 NG VN+ S++ DV+ +++K+K A + A ++A +R++P ++ V++ + TF R+ Sbjct: 122 NGTVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNSKLEGTFKRL 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 182 PER-SDLSADI--NEHLIVELYSK 202 >gi|262197163|ref|YP_003268372.1| ribosomal protein S4 [Haliangium ochraceum DSM 14365] gi|262080510|gb|ACY16479.1| ribosomal protein S4 [Haliangium ochraceum DSM 14365] Length = 209 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + RSY PG HGQ R+ K S +G QLR KQK+K+ YG I+E++FR + A R +G Sbjct: 30 KCGYDRRSYPPGQHGQSRRRKRSDYGEQLREKQKVKRIYG-IAERQFRGYYHRASRMKGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NLI LE RLD +VYR F ARQ V H H L++GR VNI SY + G ++V Sbjct: 89 TGENLIQLLERRLDNVVYRMGFACDHAEARQLVLHGHFLIDGRRVNIPSYLIRSGQTVQV 148 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+KS+ + ++E+ E R VP +I + D + +PS DV + + L+VE Sbjct: 149 KEKSRTVTRIVESLGAVERRGVPVWIDLEKDAFKGSVKALPSR-SDVSLDI--REQLIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|125719124|ref|YP_001036257.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK36] gi|125499041|gb|ABN45707.1| 30S ribosomal protein S4, putative [Streptococcus sanguinis SK36] gi|325686442|gb|EGD28471.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK72] gi|325698067|gb|EGD39948.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK160] gi|327463801|gb|EGF10117.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1057] gi|327467659|gb|EGF13156.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK330] gi|327471574|gb|EGF17017.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK408] gi|328945138|gb|EGG39293.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1087] Length = 245 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 43 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 101 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 102 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 160 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 161 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 219 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 220 TRLPE--RDEINPEINEA-LIVEFYNK 243 >gi|324989545|gb|EGC21491.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK353] Length = 245 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 43 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 101 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 102 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 160 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 161 HILVDGKRVDIPSYRVNPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 219 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 220 TRLPE--RDEINPEINEA-LIVEFYNK 243 >gi|50122927|ref|YP_052094.1| 30S ribosomal protein S4 [Pectobacterium atrosepticum SCRI1043] gi|227115248|ref|ZP_03828904.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328925|ref|ZP_03832949.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253690159|ref|YP_003019349.1| ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|61215522|sp|Q6CZZ4|RS4_ERWCT RecName: Full=30S ribosomal protein S4 gi|259495287|sp|C6DFS4|RS4_PECCP RecName: Full=30S ribosomal protein S4 gi|49613453|emb|CAG76904.1| 30S ribosomal subunit protein S4 [Pectobacterium atrosepticum SCRI1043] gi|251756737|gb|ACT14813.1| ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 206 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEARQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|222529703|ref|YP_002573585.1| 30S ribosomal protein S4 [Caldicellulosiruptor bescii DSM 6725] gi|254764564|sp|B9MKF4|RS4_ANATD RecName: Full=30S ribosomal protein S4 gi|222456550|gb|ACM60812.1| ribosomal protein S4 [Caldicellulosiruptor bescii DSM 6725] Length = 208 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARL 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPI--REHLIVELYSK 208 >gi|326692258|ref|ZP_08229263.1| 30S ribosomal protein S4 [Leuconostoc argentinum KCTC 3773] Length = 203 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 13/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKVSEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F S+F +A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFHSLFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV---PEYISVNHDNMV 176 H+LV+G+ V+I SY+ G VI V+ KSK + + Q+A V P+++S + D + Sbjct: 119 HILVDGQRVDIPSYQVTPGQVISVRDKSKNIVPI----QVAVESVVARPQFVSFDADRLE 174 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T VR P + + L+VE+Y+R Sbjct: 175 GTLVRSPEREE---LDADINEALIVEYYNR 201 >gi|56480311|ref|NP_709084.2| 30S ribosomal protein S4 [Shigella flexneri 2a str. 301] gi|56383862|gb|AAN44791.2| 30S ribosomal subunit protein S4 [Shigella flexneri 2a str. 301] Length = 202 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 125/204 (61%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 GR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 122 PGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 182 PER-SDLSADI--NEHLIVELYSK 202 >gi|314933871|ref|ZP_07841236.1| ribosomal protein S4 [Staphylococcus caprae C87] gi|313654021|gb|EFS17778.1| ribosomal protein S4 [Staphylococcus caprae C87] Length = 200 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A + G N + L SRLD +V+ T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFEIAGKQYGVHGENFMILLASRLDAVVFSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLNIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|312622072|ref|YP_004023685.1| 30S ribosomal protein S4 [Caldicellulosiruptor kronotskyensis 2002] gi|312202539|gb|ADQ45866.1| ribosomal protein S4 [Caldicellulosiruptor kronotskyensis 2002] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARL 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPI--REHLIVELYSK 208 >gi|195979012|ref|YP_002124256.1| 30S ribosomal protein S4 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869452|ref|YP_002745400.1| 30S ribosomal protein S4 [Streptococcus equi subsp. zooepidemicus] gi|225871455|ref|YP_002747402.1| 30S ribosomal protein S4 [Streptococcus equi subsp. equi 4047] gi|226695078|sp|B4U0N4|RS4_STREM RecName: Full=30S ribosomal protein S4 gi|254764611|sp|C0MB46|RS4_STRE4 RecName: Full=30S ribosomal protein S4 gi|259495292|sp|C0MGP5|RS4_STRS7 RecName: Full=30S ribosomal protein S4 gi|195975717|gb|ACG63243.1| 30S ribosomal protein S4 RpsD [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700859|emb|CAW95600.1| 30S ribosomal protein S4 [Streptococcus equi subsp. equi 4047] gi|225702728|emb|CAX00869.1| 30S ribosomal protein S4 [Streptococcus equi subsp. zooepidemicus] Length = 203 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-MGEKQFRNLFVQATKIKEGTLGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+R + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSFRVEIGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|260592739|ref|ZP_05858197.1| ribosomal protein S4 [Prevotella veroralis F0319] gi|288803959|ref|ZP_06409382.1| ribosomal protein S4 [Prevotella melaninogenica D18] gi|302345100|ref|YP_003813453.1| ribosomal protein S4 [Prevotella melaninogenica ATCC 25845] gi|260535270|gb|EEX17887.1| ribosomal protein S4 [Prevotella veroralis F0319] gi|288333592|gb|EFC72044.1| ribosomal protein S4 [Prevotella melaninogenica D18] gi|302149280|gb|ADK95542.1| ribosomal protein S4 [Prevotella melaninogenica ATCC 25845] Length = 202 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFDKAAKAEGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 ++VNG VNI SY+ K GDV+ V++K+K L V+EA+ LA + +Y + D+ Sbjct: 119 IVVNGNVVNIASYQVKAGDVVGVREKAKSL-EVIEAA-LAGFNHSKYPWLEWDDNAKCGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHRPDR-ADIPENIKEQ--LIVELYSK 201 >gi|238788888|ref|ZP_04632678.1| 30S ribosomal protein S4 [Yersinia frederiksenii ATCC 33641] gi|238792959|ref|ZP_04636589.1| 30S ribosomal protein S4 [Yersinia intermedia ATCC 29909] gi|238722915|gb|EEQ14565.1| 30S ribosomal protein S4 [Yersinia frederiksenii ATCC 33641] gi|238727813|gb|EEQ19337.1| 30S ribosomal protein S4 [Yersinia intermedia ATCC 29909] Length = 202 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 123/204 (60%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVSHKAIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M F RI Sbjct: 122 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAVKMEGVFKRI 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + +L+VE YS+ Sbjct: 182 PER---TDLSADINEHLIVELYSK 202 >gi|171743071|ref|ZP_02918878.1| hypothetical protein BIFDEN_02197 [Bifidobacterium dentium ATCC 27678] gi|171278685|gb|EDT46346.1| hypothetical protein BIFDEN_02197 [Bifidobacterium dentium ATCC 27678] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T + +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGRTGNAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKAKSQTMVPFQIAAEGVHRDVLPAVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +++P V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEIPVQVNIQ--YVVEFYAR 208 >gi|118595311|ref|ZP_01552658.1| 30S ribosomal protein S4 [Methylophilales bacterium HTCC2181] gi|118441089|gb|EAV47716.1| 30S ribosomal protein S4 [Methylophilales bacterium HTCC2181] Length = 209 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQRR S+ S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIEKRNYPPGQHGQRRASRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR + EADR +G T NL+ LESRLD +VY+ + +RQ Sbjct: 61 KQKLRRMYG-VLEKQFRGYYAEADRRKGITGENLLQLLESRLDNVVYKMGLGASRTESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNG+ VNI S++ GD + V + +K + A + A ER PE++ V+ Sbjct: 120 IVKHNAILVNGKRVNIPSFQVSPGDEVSVVESAKSQLRIKGAIEAAVERGFPEWLEVDSK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P D+P + +LVVE YS+ Sbjct: 180 AFKGVFKNKPQR-DDLPSTI--NESLVVELYSK 209 >gi|302871525|ref|YP_003840161.1| ribosomal protein S4 [Caldicellulosiruptor obsidiansis OB47] gi|312127253|ref|YP_003992127.1| 30S ribosomal protein S4 [Caldicellulosiruptor hydrothermalis 108] gi|302574384|gb|ADL42175.1| ribosomal protein S4 [Caldicellulosiruptor obsidiansis OB47] gi|311777272|gb|ADQ06758.1| ribosomal protein S4 [Caldicellulosiruptor hydrothermalis 108] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPI--REHLIVELYSK 208 >gi|294789218|ref|ZP_06754457.1| ribosomal protein S4 [Simonsiella muelleri ATCC 29453] gi|294482959|gb|EFG30647.1| ribosomal protein S4 [Simonsiella muelleri ATCC 29453] Length = 206 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 128/212 (60%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S S PG HG + KS+ S +GLQLR K Sbjct: 1 MARYLGPKCKLARREGTDLYLKSARRSLESKCKMES-APGQHGAK-KSRLSDYGLQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ Sbjct: 59 QKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 V+H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ + Sbjct: 118 VSHKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAAQIGMPSWVSVDANK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +P + Y I + LVVEFYS+ Sbjct: 178 MEGTFKNVPDRAE--LYSDINE-QLVVEFYSK 206 >gi|203284516|ref|YP_002222256.1| 30S ribosomal protein S4 [Borrelia duttonii Ly] gi|226697808|sp|B5RMG4|RS4_BORDL RecName: Full=30S ribosomal protein S4 gi|201083959|gb|ACH93550.1| 30S ribosomal protein S4 [Borrelia duttonii Ly] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+++ +K K+ RR G N++ +PK + + PG+HG+ R++K + +G QL KQK+ Sbjct: 1 MNRKSIAKGKLVRRFGVNIFEQPKYDKLLKKKPNPPGMHGRSRRTKVTEYGKQLIEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ ++FKEA R G T NL++ LE R+D IVYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNVFKEARRQHGVTGDNLLALLERRIDNIVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D+I+VK+K K + S +E + R +P++I VN D + Sbjct: 120 GIIILNGRRVTIPSITLRANDIIQVKEKDSLKKLVRSNIEKTSTL-RKLPDWIEVNADAL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R PS +D P + ++VE+YS+ Sbjct: 179 NVKIIRTPS--RD-EIPTLANEQMIVEYYSK 206 >gi|312793912|ref|YP_004026835.1| 30S ribosomal protein S4 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181052|gb|ADQ41222.1| ribosomal protein S4 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 208 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPI--REHLIVELYSK 208 >gi|110639510|ref|YP_679719.1| 30S ribosomal protein S4 [Cytophaga hutchinsonii ATCC 33406] gi|123058544|sp|Q11QD7|RS4_CYTH3 RecName: Full=30S ribosomal protein S4 gi|110282191|gb|ABG60377.1| SSU ribosomal protein S4P [Cytophaga hutchinsonii ATCC 33406] Length = 201 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR GE + G K+ + ++Y PG+HG+ +K K S + +QL+ KQK K Sbjct: 1 MARYTGPRSRISRRFGEPVMGDSKA-LQKKNYAPGMHGRNKKRKQSEYSIQLKEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F F A R +G T NL+ LE+RLD VYR + AARQ V H+H Sbjct: 60 TYG-VLERQFAKTFDTAARKQGITGENLLKMLEARLDNTVYRLGIASSRRAARQLVIHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG VNI SY+ K GD + V++KSK + ++ ++ ++ + +M+ FV Sbjct: 119 IVVNGDVVNIPSYQLKPGDQLGVREKSKSIEAITDSLSTQSAKKFTWLEWDQSSMLGKFV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++P + Q L+VE YS+ Sbjct: 179 TYPQR-EEIPENI--QEQLIVELYSK 201 >gi|152978165|ref|YP_001343794.1| 30S ribosomal protein S4 [Actinobacillus succinogenes 130Z] gi|171704198|sp|A6VLL2|RS4_ACTSZ RecName: Full=30S ribosomal protein S4 gi|150839888|gb|ABR73859.1| ribosomal protein S4 [Actinobacillus succinogenes 130Z] Length = 206 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KSK+ A + + +LAE ++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAIREKSKKQARIKASLELAEQKEKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|315221587|ref|ZP_07863507.1| ribosomal protein S4 [Streptococcus anginosus F0211] gi|315189421|gb|EFU23116.1| ribosomal protein S4 [Streptococcus anginosus F0211] Length = 227 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 25 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 83 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 84 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 142 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 143 HILVDGKRVDIPSYRVSVGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 201 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVE+Y++ Sbjct: 202 TRLPE--RDEINPEINEA-LVVEYYNK 225 >gi|91791563|ref|YP_561214.1| 30S ribosomal protein S4 [Shewanella denitrificans OS217] gi|123166579|sp|Q12ST5|RS4_SHEDO RecName: Full=30S ribosomal protein S4 gi|91713565|gb|ABE53491.1| SSU ribosomal protein S4P [Shewanella denitrificans OS217] Length = 206 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ VLVNGR VNI S++ DV+ +++KS+ A + + ++ A+R+ P ++ V++ Sbjct: 116 QLVSHKTVLVNGRVVNIPSFKVSANDVVSIREKSRTQARIKASLEVAAQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 TKMEGAFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|319940172|ref|ZP_08014525.1| 30S ribosomal protein S4 [Streptococcus anginosus 1_2_62CV] gi|319810643|gb|EFW06973.1| 30S ribosomal protein S4 [Streptococcus anginosus 1_2_62CV] Length = 203 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVSVGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVE+Y++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEYYNK 201 >gi|289178715|gb|ADC85961.1| SSU ribosomal protein S4P [Bifidobacterium animalis subsp. lactis BB-12] Length = 239 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Sbjct: 34 MSNRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRAESDYAVRLREKQRLRA 93 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISEK+ R+ +++ + G T + +++ LE+RLD +V RA T ARQFV HRH Sbjct: 94 QYG-ISEKQLRAAYEKGTHTAGQTGNAMLTDLETRLDALVLRAGIARTTAQARQFVVHRH 152 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMV 176 +LV+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ Sbjct: 153 ILVDGNIVDRPSYRVKPGQTIQVKPKSQTMVPFQIAAEGTHRDVLPPVPGYLDVNLASLK 212 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT R P +++P V +Q VVEFY+R Sbjct: 213 ATLTRKPEP-EEIPVQVNIQ--YVVEFYAR 239 >gi|224282905|ref|ZP_03646227.1| 30S ribosomal protein S4 [Bifidobacterium bifidum NCIMB 41171] gi|310287348|ref|YP_003938606.1| SSU ribosomal protein S4P [Bifidobacterium bifidum S17] gi|311064189|ref|YP_003970914.1| 30S ribosomal protein S4P RpsD [Bifidobacterium bifidum PRL2010] gi|313140064|ref|ZP_07802257.1| 30S ribosomal protein S4 [Bifidobacterium bifidum NCIMB 41171] gi|309251284|gb|ADO53032.1| SSU ribosomal protein S4P [Bifidobacterium bifidum S17] gi|310866508|gb|ADP35877.1| RpsD SSU ribosomal protein S4P [Bifidobacterium bifidum PRL2010] gi|313132574|gb|EFR50191.1| 30S ribosomal protein S4 [Bifidobacterium bifidum NCIMB 41171] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G +SEK+ RS +++A R+ G T + +++ LE RLD +V RA T ARQFV HRH+L Sbjct: 65 G-VSEKQLRSAYEKATRTAGQTGNAMLTDLEVRLDNLVLRAGIARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+V+ KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVRAKSQTMVPFQIAAEGVHRDVLPPVPGYLDVNLASLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++++P V +Q VVEFY+R Sbjct: 184 LTRKP-EVEEIPVQVNIQ--YVVEFYAR 208 >gi|288801124|ref|ZP_06406580.1| ribosomal protein S4 [Prevotella sp. oral taxon 299 str. F0039] gi|288332058|gb|EFC70540.1| ribosomal protein S4 [Prevotella sp. oral taxon 299 str. F0039] Length = 201 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRKKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNLFEKAAKASGITGEVLLQLLESRLDNVVFRMGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-- 178 ++V+G VNI SY K G VI V++K+K L V+E + LA + +Y + DN + Sbjct: 119 IIVDGSVVNIPSYSVKPGQVIGVREKAKSL-EVIETA-LAGFNHSKYPWIEWDNATKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHTPER-ADIPENIKEQ--LIVELYSK 201 >gi|114561360|ref|YP_748873.1| 30S ribosomal protein S4 [Shewanella frigidimarina NCIMB 400] gi|122301094|sp|Q089N0|RS4_SHEFN RecName: Full=30S ribosomal protein S4 gi|114332653|gb|ABI70035.1| SSU ribosomal protein S4P [Shewanella frigidimarina NCIMB 400] Length = 206 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KPRLSEYGIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEVRLDNVVYRMGFGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAGQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRVPER-SDLSADINEQ--LIVELYSK 206 >gi|56964521|ref|YP_176252.1| 30S ribosomal protein S4 [Bacillus clausii KSM-K16] gi|61215394|sp|Q5WEB9|RS4_BACSK RecName: Full=30S ribosomal protein S4 gi|56910764|dbj|BAD65291.1| 30S ribosomal protein S4 [Bacillus clausii KSM-K16] Length = 200 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S + LQL KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGVSLSGTGKE-LAKRPYAPGQHGPNQRKKLSEYALQLHEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F F +A + G N + LESRLD +VYR T AARQ VNH H Sbjct: 60 MYG-VNERQFLRTFNDAGKMNGIHGENFMILLESRLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G V+I SYR K G I ++++S+ L V EA + + P Y+S + + + T+ Sbjct: 119 VLVDGSRVDIPSYRVKPGQTIGLRERSRNLTVVKEALDVND-FTPGYVSFDEEKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RYPERSE---LPAEITEALIVEWYSR 200 >gi|37523141|ref|NP_926518.1| 30S ribosomal protein S4 [Gloeobacter violaceus PCC 7421] gi|41017822|sp|Q7NFF4|RS4_GLOVI RecName: Full=30S ribosomal protein S4 gi|35214144|dbj|BAC91513.1| 30S ribosomal protein S4 [Gloeobacter violaceus PCC 7421] Length = 206 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ R +G L+ + PK + R++ PG+HGQ R+ K S + ++L+ Sbjct: 1 MARYTGPVCKLCRAVGMKLYLKGIRCSSPKCAIERRNFRPGVHGQARQ-KLSEYAIRLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG + EK+FR F +A R+ G+T + LE RLD +VYR F + ARQ Sbjct: 60 KQKARWSYG-VLEKQFRRTFSDASRATGNTGAKFLELLERRLDNVVYRLGFATSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA-SVLEASQLAERDVPEYISVNHD 173 +VNH H VNGR V+I SYR + GD I V S LEA+ L + P+++ N + Sbjct: 119 WVNHGHFAVNGRRVSIPSYRVRPGDAITVMPNSAAFVKEALEAASLPQ--APKWLEANRE 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + AT +P +D+ PV Q L+VEFYSR Sbjct: 177 TLAATVKALPER-EDIDTPV--QELLIVEFYSR 206 >gi|291514967|emb|CBK64177.1| SSU ribosomal protein S4P [Alistipes shahii WAL 8301] Length = 202 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 119/209 (56%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M K K KI R+ GE ++G K + R+Y PG HG R++ K S +G QL KQK K Sbjct: 1 MGKYIGPKSKIARKFGEAIYGADKV-LEKRNYPPGQHGLARKRKKVSEYGTQLSEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F +++A R G T NL+ LE RLD +VYR PT AARQ V+H Sbjct: 60 YTYG-LLEKQFSRTYEQAARMGGITGENLLKLLECRLDNVVYRLGIAPTRAAARQLVSHC 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVA 177 H+ VNG VNI SY + GDV+ V++KSK L V+ AS LA Y + DN M Sbjct: 119 HICVNGSVVNIPSYSLRAGDVVSVREKSKSL-EVISAS-LAGSSKSRYAWLEWDNASMSG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F++ P +++P + Q L+VE YS+ Sbjct: 177 RFLQKPER-EEIPENIKEQ--LIVELYSK 202 >gi|325269509|ref|ZP_08136125.1| 30S ribosomal protein S4 [Prevotella multiformis DSM 16608] gi|324988128|gb|EGC20095.1| 30S ribosomal protein S4 [Prevotella multiformis DSM 16608] Length = 202 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFDKAAKADGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 ++VNG VNI SY+ K GDV+ V++K+K L V+EA+ LA + +Y + + + Sbjct: 119 IVVNGNVVNIASYQVKAGDVVGVREKAKSL-EVIEAA-LAGFNHSKYPWLEWDENGKCGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHRPDR-ADIPENIKEQ--LIVELYSK 201 >gi|149922188|ref|ZP_01910626.1| SSU ribosomal protein S4P [Plesiocystis pacifica SIR-1] gi|149816928|gb|EDM76413.1| SSU ribosomal protein S4P [Plesiocystis pacifica SIR-1] Length = 202 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 111/184 (60%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQ R+ +PS +G QLR KQK+K+ YG + EK+FR + +A R +G Sbjct: 23 KCAYDRRQYPPGQHGQGRRRRPSDYGHQLREKQKVKRMYG-LLEKQFRGYYFKAARMKGI 81 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+S LE RLD + R F + ARQ V H H +NG+ VNI SY+ +EG+ I V Sbjct: 82 TGENLLSLLERRLDNVAVRCGFAASHAEARQLVRHGHFTINGKKVNIPSYQVREGEEIVV 141 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+++ +++A ++L +P ++ ++ DN A +P D+ + Q L+VE Sbjct: 142 REKSRKIQKIVDALAKLDRSPLPTWLEIDRDNFKAKIKNVPQR-SDISADIDEQ--LIVE 198 Query: 203 FYSR 206 YS+ Sbjct: 199 LYSK 202 >gi|195952670|ref|YP_002120960.1| 30S ribosomal protein S4 [Hydrogenobaculum sp. Y04AAS1] gi|195932282|gb|ACG56982.1| RNA-binding S4 domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 207 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQ 56 M ++ + K+DRR G + G+ + R++ PG HG+ R++K + FGL+L KQ Sbjct: 1 MGRKIQAWSKVDRRFGVVVSGKLSGNKILTRRNFPPGQHGRTKGRRAKSTEFGLRLNEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG + E +FR F +A +++G+T+ +I LE RLD +VYR T ARQFV Sbjct: 61 KLKMLYGGLRESQFRKYFDKASKAKGNTASVMIELLERRLDNVVYRLGIACTRRQARQFV 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNM 175 H H++VNG+ V+I SY+ GD+IEV K Q+ LE L R VP ++ ++ DN Sbjct: 121 VHGHIMVNGKKVDIPSYQVNVGDIIEVYSKDIPQIRQNLE--NLDPRSVPHWLEIDKDNF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V P KDV V + ++E+YSR Sbjct: 179 RGKVVDKP---KDVVLEVPINMQYIIEYYSR 206 >gi|312135469|ref|YP_004002807.1| 30S ribosomal protein S4 [Caldicellulosiruptor owensensis OL] gi|311775520|gb|ADQ05007.1| ribosomal protein S4 [Caldicellulosiruptor owensensis OL] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N++ + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLIGKVIALPTR-EDIDMPI--REHLIVELYSK 208 >gi|330444034|ref|YP_004377020.1| 30S ribosomal protein S4 [Chlamydophila pecorum E58] gi|328807144|gb|AEB41317.1| ribosomal protein S4 [Chlamydophila pecorum E58] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 4/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRSRNPLLKKPHPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G I EK+ F+E ++GD + + E RLD +VYR F +IFAA+Q V H H Sbjct: 60 CFGMILEKQLVKAFREVV-NKGDVAKLFLERFECRLDNMVYRMGFARSIFAAQQLVAHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 VLVNG+ V+ S+ + G I +K+KSK+L SV +A + E +P YIS++ N Sbjct: 119 VLVNGKRVDRRSFFVRPGMQISLKEKSKRLQSVKDALEAKDESSLPSYISLDKANCKGEL 178 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYS 205 + P + + P+ + +V EF S Sbjct: 179 LLSPEQDQIEAQLPLPINVAVVCEFLS 205 >gi|307565139|ref|ZP_07627647.1| 30S ribosomal protein S4 [Prevotella amnii CRIS 21A-A] gi|307346170|gb|EFN91499.1| 30S ribosomal protein S4 [Prevotella amnii CRIS 21A-A] Length = 201 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A +S G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNLFEKAAKSEGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + VNG VNI SY K GDV+ V++K+K L V+EA+ LA + +Y + + + Sbjct: 119 ITVNGNVVNIASYCVKTGDVVGVREKAKSL-EVIEAA-LAGFNHSKYPWLEWDENAKAGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHRPDR-ADIPENIKEQ--LIVELYSK 201 >gi|271962663|ref|YP_003336859.1| 30S ribosomal protein S4 [Streptosporangium roseum DSM 43021] gi|270505838|gb|ACZ84116.1| 30S ribosomal protein S4 [Streptosporangium roseum DSM 43021] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 8/185 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ R Y PG HG R + K S + LQLR KQK ++ YG I EK+FR+ ++EA+R G Sbjct: 30 KCPIEIRPYPPGEHG-RGRPKESEYQLQLREKQKTRRIYG-ILEKQFRNYYEEANRKGGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LESRLD +VYRA F + AARQ V H H+LVNG+ V+I SYR +E D++EV Sbjct: 88 TGENLLQILESRLDNVVYRAGFAESRDAARQQVRHGHILVNGKKVDIPSYRVREHDIVEV 147 Query: 144 KQKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 +++S+ L V A+ ++ P ++ V + M ++P + +Q L+V Sbjct: 148 RERSRNLLPYEVARATS-GDKTFPAWLGVAPEAMRVLIHQLPVRQQ---IDTQVQEQLIV 203 Query: 202 EFYSR 206 E YS+ Sbjct: 204 ELYSK 208 >gi|313901168|ref|ZP_07834656.1| ribosomal protein S4 [Clostridium sp. HGF2] gi|312954126|gb|EFR35806.1| ribosomal protein S4 [Clostridium sp. HGF2] Length = 200 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 121/208 (58%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G ++ + R+Y PG HG ++ K + +G QLR KQK++ Sbjct: 1 MSRINGPVWKTSRRLGFSIL-ETGEELQKRAYAPGQHGPTKRVKLTNYGQQLREKQKIRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + F +A + +G T N + LESRLD +VYR F T AARQ VNH H Sbjct: 60 MYG-LNERQFYNTFIKASKMKGVTGDNFLGLLESRLDNLVYRMGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G V+E+K+KS+ + ++ EA + A + +I V+ D T++ Sbjct: 119 ILVNGKKVDIPSFIAKPGMVVEIKEKSRDMKAINEALE-ATLNTVAFIDVDKDAKKGTYL 177 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L LVVEFY+R Sbjct: 178 RLPERSELNSE-----FNELLVVEFYNR 200 >gi|172058242|ref|YP_001814702.1| ribosomal protein S4 [Exiguobacterium sibiricum 255-15] gi|226699065|sp|B1YKD2|RS4_EXIS2 RecName: Full=30S ribosomal protein S4 gi|171990763|gb|ACB61685.1| ribosomal protein S4 [Exiguobacterium sibiricum 255-15] Length = 199 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 120/208 (57%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L K + R Y PG HG R+ K S +GLQL+AKQ ++ Sbjct: 1 MARYTGPAWKLSRRLGISLTETGKE-IAKRPYAPGQHGNSRR-KMSEYGLQLQAKQTLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F IF +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 59 MYG-VNERQFNRIFNDAGKMPGIHGENFMFLLEARLDNVVYRMGMARTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I S+R K G I V++KSK + EA ++A ++++ + + + TFV Sbjct: 118 IQVDGARVDIPSFRVKPGQTISVREKSKNFVVIKEALEVAP-ATKDFVTFDAEKLEGTFV 176 Query: 181 RIP--SSLKDVPYPVIMQPNLVVEFYSR 206 R+P S L D +Q LVVE+YSR Sbjct: 177 RLPERSELNDQ-----IQEQLVVEYYSR 199 >gi|42560826|ref|NP_975277.1| 30S ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|331703280|ref|YP_004399967.1| 30S ribosomal protein S4 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|61215585|sp|Q6MTW7|RS4_MYCMS RecName: Full=30S ribosomal protein S4 gi|42492322|emb|CAE76919.1| 30S ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|256384411|gb|ACU78981.1| ribosomal protein S4 [Mycoplasma mycoides subsp. capri str. GM12] gi|256385243|gb|ACU79812.1| ribosomal protein S4 [Mycoplasma mycoides subsp. capri str. GM12] gi|296455723|gb|ADH21958.1| ribosomal protein S4 [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|301321292|gb|ADK69935.1| ribosomal protein S4 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|328801835|emb|CBW53988.1| 30S ribosomal protein S4 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 MS+ S K RR G ++ G+ S R PG HG+ R K K S +G QL+ KQK Sbjct: 1 MSRFIGSTFKKSRRFGFSILETGKEFSKGKKRITTPGQHGKERAKVKVSEYGQQLQEKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K YG +SE++FR+ F +A + +G N + LESRLD IVYR F T ARQ VN Sbjct: 61 VKFMYG-LSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLVN 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H H+LVNG+ V+I SY GD++EVK K+ VLEA Q E + E++ VN + + Sbjct: 120 HGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQNNEATL-EFVKVNKNEVKG 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FVR+P + + +L+VE+Y+R Sbjct: 179 EFVRLP---ERTELSSEISESLIVEWYNR 204 >gi|78357275|ref|YP_388724.1| 30S ribosomal protein S4 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90101689|sp|Q30Z67|RS4_DESDG RecName: Full=30S ribosomal protein S4 gi|78219680|gb|ABB39029.1| SSU ribosomal protein S4P [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 208 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K SK +I RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDSKCRICRREGGKLFLKGDRCYTDKCAFDRRPYAPGQHGRARK-KNSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+F S F +AD S+G T NL+S LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRMYG-LLEKQFHSYFVKADMSKGVTGSNLLSILERRLDNVIYRLGFANSRSQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H VNGR I S + K GDVIEV++K++++ + EA + +A R P ++ + Sbjct: 119 MVRHGIFTVNGRKATIPSIQVKVGDVIEVREKNRKMPVIAEAQEVIARRGCPSWLEADGP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P +D+ +P M L+VE YS+ Sbjct: 179 NFRGVVKALPQR-EDIQFP--MSEQLIVELYSK 208 >gi|86158343|ref|YP_465128.1| 30S ribosomal protein S4 [Anaeromyxobacter dehalogenans 2CP-C] gi|197122365|ref|YP_002134316.1| 30S ribosomal protein S4 [Anaeromyxobacter sp. K] gi|220917147|ref|YP_002492451.1| RNA-binding S4 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|123497980|sp|Q2IJ65|RS4_ANADE RecName: Full=30S ribosomal protein S4 gi|226697798|sp|B4UBC5|RS4_ANASK RecName: Full=30S ribosomal protein S4 gi|254764563|sp|B8J886|RS4_ANAD2 RecName: Full=30S ribosomal protein S4 gi|85774854|gb|ABC81691.1| SSU ribosomal protein S4P [Anaeromyxobacter dehalogenans 2CP-C] gi|196172214|gb|ACG73187.1| RNA-binding S4 domain protein [Anaeromyxobacter sp. K] gi|219955001|gb|ACL65385.1| RNA-binding S4 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 109/184 (59%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQ R +K S +G+QLR KQK+K+ YG + E FR ++ A ++G Sbjct: 30 KCAIERRPYPPGQHGQGR-TKFSEYGVQLREKQKVKRMYG-LLEAGFRHAYQNAAAAKGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +V+R F T ARQ V H H VNGR VNI SY C+ GD +E+ Sbjct: 88 TGENLLQTLELRLDNVVFRLGFADTRNEARQLVRHGHFKVNGRKVNIPSYLCRPGDKVEL 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K +SK++ + EA + + R VP ++ ++ T V+ + +D+ P+ Q L+VE Sbjct: 148 KDRSKKVVRITEALEAVDRRGVPAWLDLDKGGFKGT-VKTSPAREDITMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|315186307|gb|EFU20068.1| SSU ribosomal protein S4P [Spirochaeta thermophila DSM 6578] Length = 211 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 4/192 (2%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 GE + PK + PG R KPS + +QLR KQK+K+ Y ++SE +FR F Sbjct: 23 GERCYT-PKCAMTKNRPKPGKAQYARMRKPSNYAIQLREKQKLKRLY-NMSEAQFRRFFH 80 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A++ G T NLI LE RLD IVYR F + ARQ V+H HVLVNGR VNI SY Sbjct: 81 MAEKMPGRTGDNLIILLERRLDNIVYRMHFASSRKQARQIVDHGHVLVNGRKVNIPSYIV 140 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 +EGD +E+++KSK+L E+ + R V ++ V+ DN+V T IP D+ Sbjct: 141 REGDRVEIREKSKKLLVFKESLKEYTRSGVMAWLEVDPDNLVGTVKMIPMR-SDITDLAD 199 Query: 195 MQPNLVVEFYSR 206 ++ NL+VE YS+ Sbjct: 200 IKENLIVELYSK 211 >gi|158317765|ref|YP_001510273.1| RNA-binding S4 domain-containing protein [Frankia sp. EAN1pec] gi|158113170|gb|ABW15367.1| RNA-binding S4 domain protein [Frankia sp. EAN1pec] Length = 209 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 106/187 (56%), Gaps = 9/187 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQ R KQK + YG I EK+FR + EA+R G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRTKDSEYLLQKREKQKCARIYG-ILEKQFRGYYDEANRRAG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYR F P+ AARQ V H HV VNGR V+I SYR E D++E Sbjct: 87 KTGDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSYRVTENDIVE 146 Query: 143 VKQKSKQLASVLEASQLA--ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNL 199 + KS++L + A + A R VP +I M +P+ + D +Q L Sbjct: 147 IAPKSRELTPFIVARETAGTGRTVPPWIEAIPSQMRLLVHSLPARQVIDTQ----VQEQL 202 Query: 200 VVEFYSR 206 +VE YS+ Sbjct: 203 IVELYSK 209 >gi|255311449|ref|ZP_05354019.1| 30S ribosomal protein S4 [Chlamydia trachomatis 6276] gi|255317750|ref|ZP_05358996.1| 30S ribosomal protein S4 [Chlamydia trachomatis 6276s] gi|296436163|gb|ADH18337.1| 30S ribosomal protein S4 [Chlamydia trachomatis G/9768] gi|296438023|gb|ADH20184.1| 30S ribosomal protein S4 [Chlamydia trachomatis G/11074] gi|297140525|gb|ADH97283.1| 30S ribosomal protein S4 [Chlamydia trachomatis G/9301] Length = 209 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLLRKPNPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ ++E +G+ + + E RLD IVYR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAYEEVVNKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G I +K+KSK+LA V E+ L +D +P Y+S++ Sbjct: 120 VLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTES--LENKDQSSLPAYLSLDKAAFKG 177 Query: 178 TFVRIPSS---LKDVPYPVIMQPNLVVEFYS 205 V P +P PV + +++ EF S Sbjct: 178 ELVVAPELDQIASQLPLPVNV--SVICEFLS 206 >gi|71065083|ref|YP_263810.1| 30S ribosomal protein S4 [Psychrobacter arcticus 273-4] gi|90101710|sp|Q4FUD2|RS4_PSYA2 RecName: Full=30S ribosomal protein S4 gi|71038068|gb|AAZ18376.1| SSU ribosomal protein S4P [Psychrobacter arcticus 273-4] Length = 213 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 127/218 (58%), Gaps = 17/218 (7%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ PG HG R +K S + LQLR K Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHGVSR-NKSSEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K+ YG + E++F + +KEA R RG T NL++ LESRLD +VYR F T ARQ Sbjct: 60 QKVKRIYG-VLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVN--GRS----VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYI 168 V+HR V+V GR VNI S + ++GDVI +++KS++ + A +LA +R +PE++ Sbjct: 119 VSHRTVMVKKAGRDEFVRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWL 178 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+H + TF + P + P + +L+VE YS+ Sbjct: 179 DVDHSKLQGTFKKAPDR---IDLPAEINESLIVELYSK 213 >gi|85060232|ref|YP_455934.1| 30S ribosomal protein S4 [Sodalis glossinidius str. 'morsitans'] gi|123518718|sp|Q2NQP6|RS4_SODGM RecName: Full=30S ribosomal protein S4 gi|84780752|dbj|BAE75529.1| 30S ribosomal protein S4 [Sodalis glossinidius str. 'morsitans'] Length = 206 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R K + S +G+QLR KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE Sbjct: 38 PGQHGAR-KPRLSDYGVQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR F T +RQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V Sbjct: 96 GRLDNVVYRMGFGATRAESRQLVSHKAIMVNGRVVNIASYQVTPNDVVSIREKAKKQSRV 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +LAE R+ P ++ V+ M F RIP + +L+VE YS+ Sbjct: 156 RASLELAEQREKPTWLEVDAAKMEGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|93005338|ref|YP_579775.1| 30S ribosomal protein S4 [Psychrobacter cryohalolentis K5] gi|122415887|sp|Q1QDG2|RS4_PSYCK RecName: Full=30S ribosomal protein S4 gi|92393016|gb|ABE74291.1| SSU ribosomal protein S4P [Psychrobacter cryohalolentis K5] Length = 213 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 127/218 (58%), Gaps = 17/218 (7%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ PG HG R +K S + LQLR K Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHGVSR-NKSSEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K+ YG + E++F + +KEA R RG T NL++ LESRLD +VYR F T ARQ Sbjct: 60 QKVKRIYG-VLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVN--GRS----VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYI 168 V+HR V+V GR VNI S + ++GDVI +++KS++ + A +LA +R +PE++ Sbjct: 119 VSHRTVMVKKAGRDEFIRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWL 178 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+H + TF + P + P + +L+VE YS+ Sbjct: 179 DVDHSKLQGTFKKAPDR---IDLPAEINESLIVELYSK 213 >gi|310829557|ref|YP_003961914.1| ribosomal protein S4 [Eubacterium limosum KIST612] gi|308741291|gb|ADO38951.1| ribosomal protein S4 [Eubacterium limosum KIST612] Length = 209 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 113/194 (58%), Gaps = 10/194 (5%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 GE + K R PG HG+RR +K S +GLQLR KQK+K+ YG + EK+F F Sbjct: 23 GERCYSTNKCAFERRPTPPGQHGKRR-TKLSEYGLQLREKQKVKRIYG-VLEKQFAHYFD 80 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A++ +G T NL+ LE+RLD +VYR + ARQ V H H LVNG+ VN+ SY Sbjct: 81 LAEKQKGITGSNLLEILETRLDNVVYRLGLATSRKEARQLVQHAHFLVNGKKVNVPSYLV 140 Query: 136 KEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 KEGD IEVK KSK + +LEA++ R V ++S + D + + P+ +D+ Sbjct: 141 KEGDTIEVKAKSKKSPKFKEILEATE--NRAVAPWLSADLDTLSGKVIGRPTR-EDI--D 195 Query: 193 VIMQPNLVVEFYSR 206 V + +L+VE YS+ Sbjct: 196 VEIAEHLIVELYSK 209 >gi|293390661|ref|ZP_06634995.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951195|gb|EFE01314.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 206 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ D++ V++KSK+ A + + +LAE ++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDLVAVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|228470684|ref|ZP_04055535.1| ribosomal protein S4 [Porphyromonas uenonis 60-3] gi|228307541|gb|EEK16537.1| ribosomal protein S4 [Porphyromonas uenonis 60-3] Length = 201 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE ++G K ++ ++Y PG HG R+ K S + LQLR KQ K Sbjct: 1 MARYIGPKSKIARKFGEPIFGADKV-LSKKNYPPGQHGNNRRRKQSEYALQLREKQMAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A R+ G T L+ LESRLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLERQFRNLFEKAQRTSGITGEILLQLLESRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD--NMVAT 178 ++V+G VNI SY K G ++ V+++ K + + A LA + +Y + D Sbjct: 119 IVVDGEVVNIPSYTLKPGQIVGVRERDKSMEVI--ADSLAGYNHSKYPWLEWDARTYSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +P+ +++P P+ Q L+VE YS+ Sbjct: 177 YLNVPTR-EEIPEPIKEQ--LIVELYSK 201 >gi|223042027|ref|ZP_03612208.1| 30S ribosomal protein S4 [Actinobacillus minor 202] gi|240948151|ref|ZP_04752554.1| 30S ribosomal protein S4 [Actinobacillus minor NM305] gi|198246529|gb|ACH82221.1| 30S ribosomal protein S4 [Actinobacillus minor 202] gi|240297504|gb|EER48011.1| 30S ribosomal protein S4 [Actinobacillus minor NM305] Length = 208 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV--------NTRSYGPGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L+ KS V N PG HG R K + S +G QL Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIESKCRNRLDVAPGQHGAR-KPRLSDYGSQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T A Sbjct: 58 REKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 RQ V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 117 RQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + +L+VE YS+ Sbjct: 177 ATKMEGVFKRTPER-SDLSADI--NEHLIVELYSK 208 >gi|87122791|ref|ZP_01078664.1| 30S ribosomal protein S4 [Marinomonas sp. MED121] gi|86161956|gb|EAQ63248.1| 30S ribosomal protein S4 [Marinomonas sp. MED121] Length = 206 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+HG RR + S +GLQLR KQK+++ YG + EK+FR+ +K+A R +G T NL+ LE Sbjct: 38 PGVHGARR-GRLSDYGLQLREKQKVRRIYG-VLEKQFRNYYKDAARGKGATGENLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYRA F T +RQ V H+ + VNG +VNI SY+ K GDV+ V++K+K+ + Sbjct: 96 SRLDNVVYRAGFGATRAESRQLVAHKGIQVNGATVNIASYQVKAGDVVSVREKAKKQLRI 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +L++ R ++ + + A F P D+ + NL+VE YS+ Sbjct: 156 QNAIELSKNRTSTHWVETDATKLEAVFKAAPER-SDLSAEI--NENLIVELYSK 206 >gi|227875432|ref|ZP_03993573.1| ribosomal protein S4 [Mobiluncus mulieris ATCC 35243] gi|269977316|ref|ZP_06184289.1| ribosomal protein S4 [Mobiluncus mulieris 28-1] gi|306818743|ref|ZP_07452465.1| 30S ribosomal protein S4 [Mobiluncus mulieris ATCC 35239] gi|307701146|ref|ZP_07638171.1| ribosomal protein S4 [Mobiluncus mulieris FB024-16] gi|227843986|gb|EEJ54154.1| ribosomal protein S4 [Mobiluncus mulieris ATCC 35243] gi|269934619|gb|EEZ91180.1| ribosomal protein S4 [Mobiluncus mulieris 28-1] gi|304648429|gb|EFM45732.1| 30S ribosomal protein S4 [Mobiluncus mulieris ATCC 35239] gi|307614141|gb|EFN93385.1| ribosomal protein S4 [Mobiluncus mulieris FB024-16] Length = 206 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 118/210 (56%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ R +G L + K R YGPG HG+ R+ S + ++L+ KQ+++ Sbjct: 1 MANRSRKMVRLSRSLGMPLTPKAKRYFERRPYGPGEHGRARRRSESDYAVRLKEKQRLRA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y I E + F+EA R G T NLI+ LE RLD +V RA F T+F ARQ V HRH Sbjct: 61 QYA-IREAQLVKSFQEALRMEGRTGDNLITLLEQRLDALVLRAGFGRTMFQARQIVTHRH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMV 176 +LV+G+ V+ SYR + G ++VK S+ + A++ + RD VP+Y+SV+ + + Sbjct: 120 ILVDGKIVDRPSYRVRPGQTVQVKPSSQVKDPFVVAARGSHRDVLPAVPDYLSVDLEKLR 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R+P K PV LVVE+YSR Sbjct: 180 FTLNRVP---KRDEVPVQCDVQLVVEYYSR 206 >gi|85057521|ref|YP_456437.1| 30S ribosomal protein S4 [Aster yellows witches'-broom phytoplasma AYWB] gi|123518331|sp|Q2NJN5|RS4_AYWBP RecName: Full=30S ribosomal protein S4 gi|84789626|gb|ABC65358.1| SSU ribosomal protein S4P [Aster yellows witches'-broom phytoplasma AYWB] Length = 198 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 123/208 (59%), Gaps = 12/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+ ++ K ++ R+YGPG HGQ+ K K S +G QL+ KQK++ Sbjct: 1 MSRYTGSLWKVSRRLNYSVSETGKE-LHKRAYGPGQHGQK-KVKLSDYGFQLQEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+FR F A + +G + LESRLD +VYR F T ARQ VNH H Sbjct: 59 TYG-VSEKQFRKTFDNASKLKGIHGEMFLVLLESRLDNVVYRLGFAKTRAQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYISVNHDNMVAT 178 +LV+G+ V+I SYR K G + +++KSK L V EA S+ D Y+S++ + +V Sbjct: 118 ILVDGKKVDIASYRLKPGQTVTLREKSKNLNIVQEALNSKFVRAD---YVSLDKE-LVGK 173 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR P + +P + L+VE+Y+R Sbjct: 174 YVRYPQRNEFLP---DINEQLIVEYYNR 198 >gi|320093741|ref|ZP_08025600.1| 30S ribosomal protein S4 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979326|gb|EFW10817.1| 30S ribosomal protein S4 [Actinomyces sp. oral taxon 178 str. F0338] Length = 207 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 9/211 (4%) Query: 1 MSKRESSKH-KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M+K S K + R +G L + R YGPG HG+ R+ + S + ++L+ KQ+++ Sbjct: 1 MAKNRSRKQVRESRALGLALTPKAVRYFEKRPYGPGEHGRSRRRQDSDYAVRLKEKQRLR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E + R F+EA R+ G T NL+ LE R+D +V RA TI ARQFV HR Sbjct: 61 AQYG-IREAQLRRAFEEARRTAGLTGENLVELLEMRIDALVLRAGIARTIQQARQFVVHR 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNM 175 H+LV+G+ V+ S+R G ++VK KS+ A+Q RD VP+Y+ V+ + + Sbjct: 120 HILVDGKIVDRPSFRVNPGQTLQVKPKSQTTVPFEIAAQGIHRDVLPQVPDYLDVDLERL 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT VR P K PV +VVE YSR Sbjct: 180 KATLVRRP---KRAEVPVTCDVQMVVEHYSR 207 >gi|319787902|ref|YP_004147377.1| ribosomal protein S4 [Pseudoxanthomonas suwonensis 11-1] gi|317466414|gb|ADV28146.1| ribosomal protein S4 [Pseudoxanthomonas suwonensis 11-1] Length = 208 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 10/203 (4%) Query: 10 KIDRRIGENL-WGRPKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L P ++++ PG HG RK K S + QLR KQK+K+ YG + Sbjct: 10 KLARREGADLSLKSPARALDSKCKLEQKPGQHGAARKGKLSDYATQLREKQKVKRIYG-L 68 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 E++FR+ +K+A +G+T NL+ LE+RLD +VYR F T +ARQ V+HR VLVNG Sbjct: 69 LERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPSARQLVSHRGVLVNG 128 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIP 183 + VN+ SY+ K GD I + +K+++ V EA +AE+ P +I V+ F +P Sbjct: 129 KPVNLPSYQVKAGDSIALSEKAQKQLRVQEALTVAEQHDMTPSWIEVDAKKFAGVFKAVP 188 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 P + L+VE YS+ Sbjct: 189 DR---ADLPADINEALIVELYSK 208 >gi|225351919|ref|ZP_03742942.1| hypothetical protein BIFPSEUDO_03523 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157166|gb|EEG70505.1| hypothetical protein BIFPSEUDO_03523 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 208 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 121/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T + ++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGQTGNAMLIDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKAKSQTMVPFQIAAEGTHRDVLPPVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +++P V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEIPVQVNIQ--YVVEFYAR 208 >gi|209560256|ref|YP_002286728.1| 30S ribosomal protein S4 [Streptococcus pyogenes NZ131] gi|226695085|sp|B5XJ99|RS4_STRPZ RecName: Full=30S ribosomal protein S4 gi|209541457|gb|ACI62033.1| SSU ribosomal protein S4p (S9e) [Streptococcus pyogenes NZ131] Length = 203 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++ +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLVVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLKGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + LVVEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LVVEFYNK 201 >gi|307718230|ref|YP_003873762.1| 30S ribosomal protein S4 [Spirochaeta thermophila DSM 6192] gi|306531955|gb|ADN01489.1| 30S ribosomal protein S4 [Spirochaeta thermophila DSM 6192] Length = 211 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/192 (42%), Positives = 110/192 (57%), Gaps = 4/192 (2%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 GE + PK + PG R KPS + +QLR KQK+K+ Y ++SE +FR F Sbjct: 23 GERCYT-PKCAMAKNRPKPGKAQYARMRKPSNYAIQLREKQKLKRLY-NMSEAQFRRFFH 80 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A++ G T NLI LE RLD IVYR F + ARQ V H HVLVNGR VNI SY Sbjct: 81 MAEKMPGKTGDNLIILLERRLDNIVYRMHFASSRKQARQIVGHGHVLVNGRKVNIPSYLV 140 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 +EGD +E+++KSK+L E+ + R V ++ V+ DN+V T IP D+ Sbjct: 141 REGDRVEIREKSKKLLVFKESLKEYTRSGVMSWLEVDPDNLVGTVKMIPMR-SDITDLAD 199 Query: 195 MQPNLVVEFYSR 206 ++ NL+VE YS+ Sbjct: 200 IKENLIVELYSK 211 >gi|283853178|ref|ZP_06370431.1| ribosomal protein S4 [Desulfovibrio sp. FW1012B] gi|283571436|gb|EFC19443.1| ribosomal protein S4 [Desulfovibrio sp. FW1012B] Length = 208 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K +I RR G L+ + K R Y PG HG+ RK K S + + LR Sbjct: 1 MARYTEAKCRICRREGGKLFLKGDRCYTDKCAYERRPYAPGQHGRIRK-KMSDYAVMLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F+ AD +G T NL+SFLE R+D +VYR F + ARQ Sbjct: 60 KQKTRRMYG-ILEGQFRAYFQRADMKKGVTGENLLSFLERRMDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H ++NG V I S + K GDVIEV++K++Q +LEA Q +A R P ++ V+ + Sbjct: 119 LVRHGLFVLNGHRVTIPSLQVKVGDVIEVREKNRQSPIILEAQQVIARRGCPAWLEVDGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +DV +P+ Q L+VE YS+ Sbjct: 179 KLKGKVNALPTR-EDVQFPINEQ--LIVELYSK 208 >gi|257095016|ref|YP_003168657.1| 30S ribosomal protein S4 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047540|gb|ACV36728.1| ribosomal protein S4 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 209 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + RSY PG HGQ+ + S +G+ LR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRSYAPGQHGQKSGQRLSDYGVHLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR ++KEADR RG T L+ LESRLD++ YR F + +RQ Sbjct: 61 KQKIRRIYG-VLEGQFRKVYKEADRRRGVTGEVLLQLLESRLDSVAYRMGFAASRSESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHD 173 V H VLVNGR VNI SY+ + GDV+EV +K+K L + R PE++ V+ Sbjct: 120 VVRHNGVLVNGRRVNIPSYQVRPGDVVEVCEKAKAHLRVKAALAAAEARGFPEWVEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P + P + +LV+E YS+ Sbjct: 180 AAKGVYKAHPERSE---LPPTINESLVIELYSK 209 >gi|304384301|ref|ZP_07366712.1| 30S ribosomal protein S4 [Prevotella marshii DSM 16973] gi|304334617|gb|EFM00899.1| 30S ribosomal protein S4 [Prevotella marshii DSM 16973] Length = 201 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLESRLDNVVFRMGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G VI V++KSK L + EA +I ++++ F+ Sbjct: 119 IVVDGQVVNIPSYAVKPGQVIGVREKSKSLEVIEEALAGFNHSKYPWIEWDNNSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + Q L+VE YS+ Sbjct: 179 HKPER-ADIPESIKEQ--LIVELYSK 201 >gi|149279638|ref|ZP_01885767.1| 30S ribosomal protein S4 [Pedobacter sp. BAL39] gi|149229674|gb|EDM35064.1| 30S ribosomal protein S4 [Pedobacter sp. BAL39] Length = 202 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 125/209 (59%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G P ++ ++Y PG HG +R+ K S + +QL KQK+K Sbjct: 1 MARYTGPKSKIARKFREPIFG-PDKVLDRKNYPPGQHGASKRRGKQSEYAVQLMEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR++F +A +G T NL+ LE+RLD VYR T AARQ V+H+ Sbjct: 60 YTYG-VLERQFRNLFTKASSRQGITGDNLLQLLEARLDNTVYRLGIATTRSAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE--YISVNHDNMVA 177 HV VNG VNI SY+ K GDVI V++KSK L ++ + +A R + + ++ N + Sbjct: 119 HVTVNGEVVNIPSYQLKAGDVIAVREKSKTLEAI--TNSVAGRVINKFNWLDWNASELTG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P+ +D P ++ NL+VE YS+ Sbjct: 177 KFLSYPN--RD-EIPENIKENLIVELYSK 202 >gi|291286338|ref|YP_003503154.1| 30S ribosomal protein S4 [Denitrovibrio acetiphilus DSM 12809] gi|290883498|gb|ADD67198.1| ribosomal protein S4 [Denitrovibrio acetiphilus DSM 12809] Length = 208 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K + Y PG HGQ RK K S FG QLR Sbjct: 1 MARYTGAVCKLCRREGMKLFLKGERCYKDKCGFEKKPYPPGQHGQGRK-KISDFGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F +A R G T NL+ LE RLD IVYRA F + ARQ Sbjct: 60 KQKVKRLYG-VLEKQFRRYFDKATRMDGITGENLLQLLERRLDNIVYRAGFAGSRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H L++G+ V+I S+ K G VIEV++KS+ ++ + AE R V +++++ Sbjct: 119 MVKHSHFLIDGKKVDIPSFLVKPGMVIEVREKSQNVSRFKDCLDTAEGRGVSDWLALEKS 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N A R+P D+ Y + Q +L+VE YS+ Sbjct: 179 NFKAVVNRLPER-DDIGYDI--QEHLIVELYSK 208 >gi|270264349|ref|ZP_06192615.1| 30S ribosomal protein S4 [Serratia odorifera 4Rx13] gi|270041485|gb|EFA14583.1| 30S ribosomal protein S4 [Serratia odorifera 4Rx13] Length = 206 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V + +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + +L+VE YS+ Sbjct: 179 EGVFKRMPER---TDLSADINEHLIVELYSK 206 >gi|257054497|ref|YP_003132329.1| 30S ribosomal protein S4 [Saccharomonospora viridis DSM 43017] gi|256584369|gb|ACU95502.1| SSU ribosomal protein S4P [Saccharomonospora viridis DSM 43017] Length = 202 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I RR+ +L G K+ R Y PG HG R + K S + LQL+ KQK + Sbjct: 1 MARYTGPATRISRRLKVDLVGNDKA-FERRPYPPGQHG-RGRVKESEYLLQLQEKQKARH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR ++EA R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-ILERQFRRYYEEAARRPGKTGDNLLQLLESRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNMVATF 179 LVNG VNI SYR + D+I+V+ KS K L V L ER +P ++ V N+ Sbjct: 118 FLVNGEKVNIPSYRVSKFDIIDVRPKSLKTLPFVAAKESLGERPIPAWLQVVPSNLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + +VP +Q L+VEFYS+ Sbjct: 178 HQLPERAQIEVP----VQEQLIVEFYSK 201 >gi|326799154|ref|YP_004316973.1| ribosomal protein S4 [Sphingobacterium sp. 21] gi|326549918|gb|ADZ78303.1| ribosomal protein S4 [Sphingobacterium sp. 21] Length = 202 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G P + ++Y PG+HG +R+ K S + +QL+ KQK K Sbjct: 1 MARYTGPKSKIARKFREPIFG-PDKALERKNYPPGMHGVSKRRGKQSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F +A G T NL+ FLE+RLD V+R PT ARQ V H+ Sbjct: 60 YTYG-VLERQFANLFDKAASKEGITGENLLKFLEARLDNTVFRLGIAPTRAGARQLVGHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ VNI SY + GDVI V+++SK L +V+ + +++ ++ + + + F Sbjct: 119 HITVNGQVVNIPSYSVRPGDVIAVRERSKTLEAVVNSVAGRKQNKYSWLEWDANGLTGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ ++P + Q L+VE YS+ Sbjct: 179 LNYPNR-DEIPENIKEQ--LIVELYSK 202 >gi|302669990|ref|YP_003829950.1| ribosomal protein S4 RpsD [Butyrivibrio proteoclasticus B316] gi|302394463|gb|ADL33368.1| ribosomal protein S4 RpsD [Butyrivibrio proteoclasticus B316] Length = 208 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+ + ADR +G T NL++ LESRLD + Sbjct: 45 RAGKKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYDRADRMKGQTGANLMTILESRLDNV 103 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H+ VLVNG+ +N+ SY K GD IE+K+ +K + + +++ Sbjct: 104 VFRMGFARTRREARQVVLHKFVLVNGKQINVPSYLVKAGDTIEIKEAAKNIQRFKDITEI 163 Query: 160 -AERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A R VPE+I VN DN+ T +PS + DVP + L+VE YS+ Sbjct: 164 TAGRLVPEWIDVNKDNLQGTVKELPSREVIDVP----VDEMLIVELYSK 208 >gi|32034695|ref|ZP_00134833.1| COG0522: Ribosomal protein S4 and related proteins [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209247|ref|YP_001054472.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae L20] gi|165977220|ref|YP_001652813.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190151138|ref|YP_001969663.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250036|ref|ZP_07336238.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253210|ref|ZP_07339359.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246713|ref|ZP_07528783.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251082|ref|ZP_07533006.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253468|ref|ZP_07535339.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255698|ref|ZP_07537502.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257882|ref|ZP_07539638.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260150|ref|ZP_07541860.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307264487|ref|ZP_07546072.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322515611|ref|ZP_08068590.1| 30S ribosomal protein S4 [Actinobacillus ureae ATCC 25976] gi|152060927|sp|A3N381|RS4_ACTP2 RecName: Full=30S ribosomal protein S4 gi|226697792|sp|B3GZ35|RS4_ACTP7 RecName: Full=30S ribosomal protein S4 gi|226697793|sp|B0BSV5|RS4_ACTPJ RecName: Full=30S ribosomal protein S4 gi|126098039|gb|ABN74867.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877321|gb|ABY70369.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916269|gb|ACE62521.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647892|gb|EFL78099.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651099|gb|EFL81253.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852413|gb|EFM84648.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856912|gb|EFM89044.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859147|gb|EFM91189.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861375|gb|EFM93365.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863612|gb|EFM95539.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865796|gb|EFM97674.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870184|gb|EFN01943.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322118321|gb|EFX90596.1| 30S ribosomal protein S4 [Actinobacillus ureae ATCC 25976] Length = 208 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV--------NTRSYGPGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L+ KS V N PG HG R K + S +G QL Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIESKCRNRLDVAPGQHGAR-KPRLSDYGSQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T A Sbjct: 58 REKQKVRRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 RQ V+H+ ++VNGR VNI SY+ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 117 RQLVSHKSIVVNGRVVNIPSYQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + +L+VE YS+ Sbjct: 177 ATKMEGVFKRTPER-SDLSADI--NEHLIVELYSK 208 >gi|261823208|ref|YP_003261314.1| 30S ribosomal protein S4 [Pectobacterium wasabiae WPP163] gi|261607221|gb|ACX89707.1| ribosomal protein S4 [Pectobacterium wasabiae WPP163] Length = 206 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQMV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 179 EGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|226227380|ref|YP_002761486.1| 30S ribosomal protein S4 [Gemmatimonas aurantiaca T-27] gi|226090571|dbj|BAH39016.1| 30S ribosomal protein S4 [Gemmatimonas aurantiaca T-27] Length = 211 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 109/186 (58%), Gaps = 7/186 (3%) Query: 24 KSPVNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 K ++ R Y PG HGQ R+ K S + QLR KQK+K+ YG +SEK+FR+ F + Sbjct: 30 KCAIDRRPYAPGQHGQATARRKKMSEYAKQLREKQKIKRIYG-VSEKQFRNTFDKVATQA 88 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T HNL++ LE+RLD +V+R F P+ AARQ + HRH+ V GR ++I SY + G+ + Sbjct: 89 GITGHNLVAALETRLDNVVFRMGFAPSRKAARQLIRHRHIEVKGRQLDIPSYAVRPGEEV 148 Query: 142 EVKQKSKQLASVLEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VKQ S++L V A + A R +I+V+ ++ + P + P+ Q LV Sbjct: 149 RVKQSSRELVLVQGAMEQASRGASLSWIAVDKESFSGRVLEKP---QRQAVPLAAQEQLV 205 Query: 201 VEFYSR 206 VE YS+ Sbjct: 206 VELYSK 211 >gi|288919689|ref|ZP_06414016.1| ribosomal protein S4 [Frankia sp. EUN1f] gi|288348878|gb|EFC83128.1| ribosomal protein S4 [Frankia sp. EUN1f] Length = 209 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/187 (42%), Positives = 106/187 (56%), Gaps = 9/187 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQ R KQK + YG + EK+FR + EA+R G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRTKDSEYLLQKREKQKCARIYG-VLEKQFRGYYDEANRRAG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYR F P+ AARQ V H HV VNGR V+I SYR E D++E Sbjct: 87 KTGDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSYRVTENDIVE 146 Query: 143 VKQKSKQLASVLEASQLA--ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNL 199 + KS++L + A + A R VP +I M +P+ + D +Q L Sbjct: 147 IAPKSRELTPFIVARETAGTGRTVPPWIEAIPSQMRLLVHSLPARQVIDTQ----VQEQL 202 Query: 200 VVEFYSR 206 +VE YS+ Sbjct: 203 IVELYSK 209 >gi|256830514|ref|YP_003159242.1| ribosomal protein S4 [Desulfomicrobium baculatum DSM 4028] gi|256579690|gb|ACU90826.1| ribosomal protein S4 [Desulfomicrobium baculatum DSM 4028] Length = 208 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K +I RR G L+ + K R+Y PG HG+ RK KPS + LQLR Sbjct: 1 MARYTGPKCRICRREGGKLFLKGDRCYTDKCAFERRAYAPGDHGKARK-KPSDYALQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++K YG I E +FR F+EA+R +G T NL+ LE+R+D + Y+ F + ARQ Sbjct: 60 KQKVRKMYG-ILEGQFRRYFEEAERRKGITGTNLLMLLETRIDNVAYKLGFANSRSQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VN+ S + K GDV+EV+ ++K+ + EA + +A R VP ++ ++ Sbjct: 119 MVRHGLFSLNGRRVNVPSIQMKSGDVLEVRDRTKKNLVITEALEVVARRGVPAWLEIDAP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +D+ +P M L+VE YS+ Sbjct: 179 AFKGSVKALPTR-EDITFP--MTEQLIVELYSK 208 >gi|149912288|ref|ZP_01900859.1| 30S ribosomal protein S4 [Moritella sp. PE36] gi|149804633|gb|EDM64692.1| 30S ribosomal protein S4 [Moritella sp. PE36] Length = 206 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG+HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDN---APGVHGAR-KPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+++KEA R +G+T NL++ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLEKQFRNLYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ ++VNG+ VNI SY+ K D + +++K+K+ A + A +++E R+ ++ V+ Sbjct: 116 QLVSHKAIVVNGKVVNIPSYKVKVNDTVSIREKAKKQARIASALEISEQREKASWVEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + R+P D+ + Q L+VE YS+ Sbjct: 176 KTLEGVYKRVPER-SDLSADINEQ--LIVELYSK 206 >gi|330997339|ref|ZP_08321190.1| ribosomal protein S4 [Paraprevotella xylaniphila YIT 11841] gi|329570713|gb|EGG52429.1| ribosomal protein S4 [Paraprevotella xylaniphila YIT 11841] Length = 201 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G P ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKSRIARRFGEAIFG-PDKVLSKRNFPPGQHGNNRRKKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A R+ G T L+ LE RLD +VYR PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNMFEKAARTSGITGEILLQNLECRLDNVVYRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G +I V++KSK L + A +I + + + Sbjct: 119 IIVDGEVVNIPSYAVKPGQIIGVREKSKSLEVIANALAGFNHSKYPWIEWDENTKSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + Q L+VE YS+ Sbjct: 179 HKPER-ADIPENIKEQ--LIVELYSK 201 >gi|120597013|ref|YP_961587.1| 30S ribosomal protein S4 [Shewanella sp. W3-18-1] gi|146294817|ref|YP_001185241.1| 30S ribosomal protein S4 [Shewanella putrefaciens CN-32] gi|152112262|sp|A1RED8|RS4_SHESW RecName: Full=30S ribosomal protein S4 gi|172046874|sp|A4YBV9|RS4_SHEPC RecName: Full=30S ribosomal protein S4 gi|110812360|gb|ABG91716.1| ribosomal protein S4 [Shewanella putrefaciens 200] gi|120557106|gb|ABM23033.1| SSU ribosomal protein S4P [Shewanella sp. W3-18-1] gi|145566507|gb|ABP77442.1| SSU ribosomal protein S4P [Shewanella putrefaciens CN-32] gi|319424604|gb|ADV52678.1| ribosomal protein S4 [Shewanella putrefaciens 200] Length = 206 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRVPER-SDLSAEINEQ--LIVELYSK 206 >gi|157372753|ref|YP_001480742.1| 30S ribosomal protein S4 [Serratia proteamaculans 568] gi|172047788|sp|A8GKH4|RS4_SERP5 RecName: Full=30S ribosomal protein S4 gi|157324517|gb|ABV43614.1| ribosomal protein S4 [Serratia proteamaculans 568] Length = 206 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQPPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V + +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + +L+VE YS+ Sbjct: 179 EGVFKRMPER---TDLSADINEHLIVELYSK 206 >gi|297625817|ref|YP_003687580.1| 30S ribosomal protein S4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921582|emb|CBL56136.1| 30S ribosomal protein S4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 201 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR G +L G K+ R Y PG+HG R ++K S + LQL+ KQK + Sbjct: 1 MARYTGPMTKKSRRFGTDLVGNDKA-FERRPYAPGVHG-RGRTKDSEYSLQLKEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F ++EA R G T L+ LESRLD +VYRA F T ARQ V+H H Sbjct: 59 AYG-VLEKQFHRYYEEASRRPGRTGDLLLQILESRLDNVVYRAGFASTRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS-VLEASQLAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI S+R D+I+V+ KS+++ V+ ERDVP +++V + M Sbjct: 118 ILVNGKKVNIPSFRVAPLDIIDVRAKSQEMTPFVIARETFGERDVPGWLTVKPNKMRVLV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YSR Sbjct: 178 HQLPTREQIV---LDVNEQEIVELYSR 201 >gi|92112578|ref|YP_572506.1| SSU ribosomal protein S4P [Chromohalobacter salexigens DSM 3043] gi|122420778|sp|Q1R0F1|RS4_CHRSD RecName: Full=30S ribosomal protein S4 gi|91795668|gb|ABE57807.1| SSU ribosomal protein S4P [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +P + PG+HGQRR+ + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRRQ-RLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGATGELLLQLLESRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNGR+VN+ SY+ K GDV+ V++K+K A + A + A R +I V+ M Sbjct: 119 SHKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQNALGIAANRGDVAWIDVDSKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P D+ + NL+VE YS+ Sbjct: 179 EGTFKAVPER-GDLSADI--NENLIVELYSK 206 >gi|312199993|ref|YP_004020054.1| ribosomal protein S4 [Frankia sp. EuI1c] gi|311231329|gb|ADP84184.1| ribosomal protein S4 [Frankia sp. EuI1c] Length = 208 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 6/185 (3%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQ R KQK + YG + EK+FR + EA+R G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRTKDSEYLLQKREKQKCARIYG-VLEKQFRGYYDEANRRSG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA F P+ AARQ V H HV VNG V+I SYR + D++E Sbjct: 87 KTGDELLKILESRLDNVVYRAGFAPSRDAARQAVRHGHVQVNGGKVDIPSYRVSDNDIVE 146 Query: 143 VKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 + KS++L + A + A +R VP ++ V M +P+ +Q L+V Sbjct: 147 IAPKSRELTPFIVARETAGQRTVPAWLEVISSQMRILVHSLPARGA---IDTQVQEQLIV 203 Query: 202 EFYSR 206 E YS+ Sbjct: 204 ELYSK 208 >gi|126666789|ref|ZP_01737766.1| ribosomal protein S4 [Marinobacter sp. ELB17] gi|126628834|gb|EAZ99454.1| ribosomal protein S4 [Marinobacter sp. ELB17] Length = 206 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDTKCNLETPPGMHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T NL+ LE+RLD + YR F T RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGVTGENLLQLLEARLDNVAYRMGFGSTRAECRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ +LVN + VNI SY+ K GDV+ V++K+K V A LA R ++ V+ M Sbjct: 119 SHKAILVNDKVVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASGRAAVSWVDVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ ++ P + NL+VE YS+ Sbjct: 179 SGVYSSVPTRIE---LPADINENLIVELYSK 206 >gi|15835528|ref|NP_297287.1| 30S ribosomal protein S4 [Chlamydia muridarum Nigg] gi|270285715|ref|ZP_06195109.1| 30S ribosomal protein S4 [Chlamydia muridarum Nigg] gi|301337109|ref|ZP_07225311.1| 30S ribosomal protein S4 [Chlamydia muridarum MopnTet14] gi|13633873|sp|Q9PJB7|RS4_CHLMU RecName: Full=30S ribosomal protein S4 gi|7190943|gb|AAF39707.1| ribosomal protein S4 [Chlamydia muridarum Nigg] Length = 209 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 121/211 (57%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLLRKPNPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ +KE +G+ + + E RLD IVYR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAYKEVVHKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G I +K+KS++LA V E+ L +D +P Y+S++ Sbjct: 120 VLVNGKKVDRRSFFVRPGMQISLKEKSRRLAIVTES--LENKDQSSLPAYLSLDKAAFKG 177 Query: 178 TFVRIPSSLK---DVPYPVIMQPNLVVEFYS 205 V P + +P PV + +++ EF S Sbjct: 178 ELVVSPELDQISSQLPLPVNV--SVICEFLS 206 >gi|152112240|sp|Q6YPY9|RS4_ONYPE RecName: Full=30S ribosomal protein S4 Length = 198 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 12/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+ ++ K + R+YGPG HGQ+ K K S +GLQL+ KQK++ Sbjct: 1 MSRYTGSLWKVSRRLNYSVSETGKE-LRKRAYGPGQHGQK-KLKLSDYGLQLQEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+FR F A + +G + LESRLD +VYR F T ARQ NH H Sbjct: 59 TYG-VSEKQFRKTFDNASKLKGIHGEMFLVLLESRLDNVVYRLGFAKTRAQARQLANHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYISVNHDNMVAT 178 +LV+G+ V+I SYR K G + +++KSK L V EA S+ D Y+S++ + +V Sbjct: 118 ILVDGKKVDIASYRLKPGQTVTLREKSKNLNIVQEAVNSKFVRAD---YVSLDKE-LVGK 173 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR P + +P + L+VE+Y+R Sbjct: 174 YVRYPQRNEFLP---DINEQLIVEYYNR 198 >gi|227510162|ref|ZP_03940211.1| 30S ribosomal protein S4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190367|gb|EEI70434.1| 30S ribosomal protein S4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 231 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+ K S +GLQL+ KQK++ Sbjct: 29 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRQKLSEYGLQLKEKQKLRY 87 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD IVYR T ARQ VNH Sbjct: 88 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLERRLDNIVYRLGLATTRRQARQLVNHG 146 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G V+ V++KSK L V +A + A P+Y+S + D + + Sbjct: 147 HITVDGKRVDIPSYEVKPGQVVSVREKSKDLQVVKDAVE-AVVGRPQYVSFDADKLEGSL 205 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 206 VRLPQREE---LDADIDESLIVEYYNK 229 >gi|226939211|ref|YP_002794282.1| 30S ribosomal protein S4 [Laribacter hongkongensis HLHK9] gi|254764593|sp|C1DAU2|RS4_LARHH RecName: Full=30S ribosomal protein S4 gi|226714135|gb|ACO73273.1| RpsD [Laribacter hongkongensis HLHK9] Length = 206 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++R PG HG + + + S +G+ LR Sbjct: 1 MARYTGPKCKLARREGTDLFLKSARRSIDSKCKLDSR---PGQHGAK-QPRLSDYGIHLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EA+R +G T NL+ LESRLD +VYR + T +R Sbjct: 57 EKQKIRRIYG-VLERQFRKYFAEAERRKGSTGENLLQILESRLDNVVYRMGYGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG VNI SY+ K GDV+ V++KSK+ + E+ LAE+ P ++SV+ Sbjct: 116 QLVSHKAIVVNGEVVNIPSYQVKAGDVVSVREKSKKQVRIAESLALAEQIGFPGWVSVDP 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF P + + LVVEFYS+ Sbjct: 176 KKMEGTFKNAPERSE---LSSDINEQLVVEFYSK 206 >gi|319778700|ref|YP_004129613.1| SSU ribosomal protein S4p (S9e) [Taylorella equigenitalis MCE9] gi|317108724|gb|ADU91470.1| SSU ribosomal protein S4p (S9e) [Taylorella equigenitalis MCE9] Length = 207 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + P++++ PG HG+ ++ S +G QLR KQ Sbjct: 1 MARYTGPKCKLSRREGIDLFLKSARRPLDSKCKFESKPGQHGRTSGARTSDYGTQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T ARQ V Sbjct: 61 KLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H + +NG+ +I S GDV+ V++KSK + ++ +LAE PE++SV Sbjct: 120 SHGAIELNGKKADIPSMIVNAGDVVSVREKSKGQIRIKDSLELAESLSFPEWVSVEPKEF 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P DV + +L+VE YSR Sbjct: 180 KGTFKQVPDR-ADVARDI--NESLIVELYSR 207 >gi|282858349|ref|ZP_06267529.1| ribosomal protein S4 [Prevotella bivia JCVIHMP010] gi|282588797|gb|EFB93922.1| ribosomal protein S4 [Prevotella bivia JCVIHMP010] Length = 201 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKTRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A +S G T L+ LE+RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNLFEKAAKSSGITGEVLLQSLEARLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + VNG VNI SY K GDV+ V++K+K L V+EA+ LA + +Y + + + Sbjct: 119 ITVNGDVVNIASYNVKAGDVVGVREKAKSL-EVIEAA-LAGFNHSKYPWLEWDENAKAGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHRPDR-ADIPENIKEQ--LIVELYSK 201 >gi|270157887|ref|ZP_06186544.1| ribosomal protein S4 [Legionella longbeachae D-4968] gi|289163854|ref|YP_003453992.1| 30S ribosomal subunit protein S4 [Legionella longbeachae NSW150] gi|269989912|gb|EEZ96166.1| ribosomal protein S4 [Legionella longbeachae D-4968] gi|288857027|emb|CBJ10841.1| 30S ribosomal subunit protein S4 [Legionella longbeachae NSW150] Length = 206 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + KS + PG HG + K + + +GLQLR K Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKL-PGQHGDK-KPRLNNYGLQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++++YG + EK+FR +K A R +G T NL++ LE RLD +VYR F T ARQ Sbjct: 59 QKIRRFYG-VLEKQFRGYYKMAARMKGATGENLMTLLERRLDNVVYRMGFASTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDN 174 V H+ +LVN + VN+ SY K GDVI V+Q++K + A L+E+ VP ++++V+ + Sbjct: 118 VTHKAILVNDKIVNVPSYLIKPGDVISVRQRAKNQGRIQAALALSEQRVPCDWLTVDTSS 177 Query: 175 MVATFVRIPSSLKDVP--YPVIMQPNLVVEFYSR 206 TF P +L D+ Y V NLVVE YS+ Sbjct: 178 FKGTFSTAP-TLTDLSSDYNV----NLVVELYSK 206 >gi|255530540|ref|YP_003090912.1| 30S ribosomal protein S4 [Pedobacter heparinus DSM 2366] gi|255343524|gb|ACU02850.1| ribosomal protein S4 [Pedobacter heparinus DSM 2366] Length = 202 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 124/209 (59%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G P ++ ++Y PG HG +R+ K S + +QL KQK+K Sbjct: 1 MARYTGPKSKIARKFREPIFG-PDKVLDRKNYPPGQHGASKRRGKQSEYAVQLMEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR++F +A G T NL+ LE+RLD VYR T AARQ V+H+ Sbjct: 60 YTYG-VLERQFRNLFTKASSRGGITGDNLLQLLEARLDNTVYRLGIATTRSAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE--YISVNHDNMVA 177 HV VNG VNI SY+ K GDVI V+QKSK L ++ + +A R + + ++ N + Sbjct: 119 HVTVNGEVVNIPSYQLKAGDVIAVRQKSKTLEAI--TNSVAGRVINKFNWLDWNASELSG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P+ +D P ++ NL+VE YS+ Sbjct: 177 KFLAYPN--RD-EIPENIKENLIVELYSK 202 >gi|307248854|ref|ZP_07530867.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307262278|ref|ZP_07543927.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306854781|gb|EFM86971.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868041|gb|EFM99868.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 204 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 16/208 (7%) Query: 8 KHKIDRRIGENLWGRPKSPV--------NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 K K+ RR G +L+ KS V N PG HG R K + S +G QLR KQK++ Sbjct: 4 KLKLSRREGTDLF--LKSGVRAIESKCRNRLDVAPGQHGAR-KPRLSDYGSQLREKQKVR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 + YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T ARQ V+H+ Sbjct: 61 RIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVSHK 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVAT 178 ++VNGR VNI SY+ DV+ V++KSK+ A + + +LA +R+ P ++ V+ M Sbjct: 120 SIVVNGRVVNIPSYQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDATKMEGV 179 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P D+ + +L+VE YS+ Sbjct: 180 FKRTPER-SDLSADI--NEHLIVELYSK 204 >gi|320540587|ref|ZP_08040237.1| 30S ribosomal subunit protein S4 [Serratia symbiotica str. Tucson] gi|320029518|gb|EFW11547.1| 30S ribosomal subunit protein S4 [Serratia symbiotica str. Tucson] Length = 206 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R K + S +G+QLR KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE Sbjct: 38 PGQHGAR-KPRLSDYGVQLREKQKVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR F T +RQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V Sbjct: 96 GRLDNVVYRMGFGATRAESRQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +LAE R+ P ++ V+ M F RIP + +L+VE YS+ Sbjct: 156 KASLELAEQREKPTWLEVDALKMEGVFKRIPER---TDLSADINEHLIVELYSK 206 >gi|170016575|ref|YP_001727494.1| ribosomal protein S4 [Leuconostoc citreum KM20] gi|226699084|sp|B1MWZ8|RS4_LEUCK RecName: Full=30S ribosomal protein S4 gi|169803432|gb|ACA82050.1| Ribosomal protein S4 [Leuconostoc citreum KM20] Length = 203 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A + R G N + LE RLD++VYR F T ARQ VNH Sbjct: 60 TYG-LTERQFHALFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGFATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H++V+G+ V+I SY G V+ V+ KSK + + A + + R P+++S + + + + Sbjct: 119 HIMVDGKRVDIPSYNVTPGQVVSVRDKSKNIVPIQAAVESVVAR--PQFVSFDAEKLEGS 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VE+Y+R Sbjct: 177 LVRLPEREE---LDADLNEALIVEYYNR 201 >gi|291518020|emb|CBK73241.1| SSU ribosomal protein S4P [Butyrivibrio fibrisolvens 16/4] Length = 197 Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/169 (44%), Positives = 109/169 (64%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R + K S + LQL+ KQK K YG + EK FR+ +++ADR +G T NL++ LESRLD + Sbjct: 34 RGRGKKSEYALQLQEKQKAKFIYG-VLEKPFRNYYEKADRQKGMTGENLMTMLESRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V+H+ LVNG++VNI SY K GDVIEV++KSK L + +++ Sbjct: 93 VFRMGFARTRKEARQVVDHKMFLVNGKAVNIPSYLVKAGDVIEVREKSKSLQRFKDITEV 152 Query: 160 -AERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 A R VPE+I V+ +N+ T +P+ + DVP + L+VE YS+ Sbjct: 153 TAGRMVPEWIDVDAENLKGTVKELPNREQIDVP----VDEMLIVELYSK 197 >gi|221133739|ref|ZP_03560044.1| 30S ribosomal protein S4 [Glaciecola sp. HTCC2999] Length = 206 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLDTAPGQHGARR-GRLSDYGIQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ + V++K+K+ A ++ A +LA +R+ P +I V+ + Sbjct: 119 SHKAICVNGQVVNIPSFKVSAETNVSVREKAKKQARIISAVELADQREKPTWIEVDGAKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P D+ + Q L+VE YS+ Sbjct: 179 SGDFKRLPER-SDLSAEINEQ--LIVELYSK 206 >gi|227513091|ref|ZP_03943140.1| 30S ribosomal protein S4 [Lactobacillus buchneri ATCC 11577] gi|227083666|gb|EEI18978.1| 30S ribosomal protein S4 [Lactobacillus buchneri ATCC 11577] Length = 231 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+ K S +GLQL+ KQK++ Sbjct: 29 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRQKLSEYGLQLKEKQKLRY 87 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD IVYR T ARQ VNH Sbjct: 88 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLERRLDNIVYRLGLATTRRQARQLVNHG 146 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G V+ V++KSK L V A + A P+Y+S + D + + Sbjct: 147 HITVDGKRVDIPSYEVKTGQVVSVREKSKDLQVVKNAVE-AVVGRPQYVSFDADKLEGSL 205 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 206 VRLPQREE---LDADIDESLIVEYYNK 229 >gi|152965078|ref|YP_001360862.1| ribosomal protein S4 [Kineococcus radiotolerans SRS30216] gi|151359595|gb|ABS02598.1| ribosomal protein S4 [Kineococcus radiotolerans SRS30216] Length = 202 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 116/201 (57%), Gaps = 7/201 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K +I R +G L + ++ R Y PG+HG R++ K S + QLR KQ+++ Y D+SE Sbjct: 7 KVRISRALGVALTPKAARFMDRRPYPPGMHG-RKQKKASDYATQLREKQRLRFQY-DVSE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R + A R G T NL+ LE+RLD +V+RA F TI+ ARQ V HRH++V+GR Sbjct: 65 TQLRRAYDLAKRKPGKTGQNLVQLLETRLDAVVWRAGFARTIYQARQMVVHRHIVVDGRR 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQ--LAERDVPEYISVNHDNMVATFVRIPSS 185 V+ S+R G IEV +SK + A + ++ ++P +++V +++ AT +P Sbjct: 125 VDRPSFRVVVGQTIEVAPRSKTKTPFIVAREGGWSDNEIPGWLAVEREDLTATVNALPVR 184 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + PV LVVE+YSR Sbjct: 185 EQ---IPVTCDEQLVVEYYSR 202 >gi|227496183|ref|ZP_03926489.1| ribosomal protein S4 [Actinomyces urogenitalis DSM 15434] gi|226834266|gb|EEH66649.1| ribosomal protein S4 [Actinomyces urogenitalis DSM 15434] Length = 207 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ S + ++L+ KQ+++ YG I E + + +F+EA R +G T +L+ Sbjct: 31 RPYGPGEHGRARRRTESDYAVRLKEKQRLRAQYG-IREAQLQRVFEEARREKGLTGESLV 89 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD +V RA F TI ARQ V HRH+LV+G+ V+ S+R K G I+V+ +S+ Sbjct: 90 ELLEMRLDALVLRAGFARTIAQARQDVVHRHILVDGKVVDRPSFRVKPGQTIQVRPRSQV 149 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + A+ RD VPEY++V + + AT VR P K PV +VVE+YS Sbjct: 150 MVPFQIAAAGTHRDVLPAVPEYLTVELEKLSATLVRRP---KRDEVPVTCDVQMVVEYYS 206 Query: 206 R 206 R Sbjct: 207 R 207 >gi|116333868|ref|YP_795395.1| 30S ribosomal protein S4 [Lactobacillus brevis ATCC 367] gi|122269445|sp|Q03R08|RS4_LACBA RecName: Full=30S ribosomal protein S4 gi|116099215|gb|ABJ64364.1| SSU ribosomal protein S4P [Lactobacillus brevis ATCC 367] Length = 201 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K +N R Y PG HGQ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRISRRLGVSLSGTGKE-LNRRPYAPGDHGQGRRQKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-MTERQFYNLFKRAGKIKEGTHGTNFMILLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI V++KSK +A +++ + A P+Y+ + D + + Sbjct: 119 HITVDGQRVDIPSYEVKIGQVISVREKSKDMA-IIKGAVEAVVGRPQYVEFDADKLAGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 178 TRFPQREE---LDAELDDSLIVEYYNR 201 >gi|187918474|ref|YP_001884037.1| 30S ribosomal protein S4 [Borrelia hermsii DAH] gi|226697809|sp|B2S0W1|RS4_BORHD RecName: Full=30S ribosomal protein S4 gi|119861322|gb|AAX17117.1| SSU ribosomal protein S4P [Borrelia hermsii DAH] Length = 208 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+++ +K K+ RR G N++ +PK + + PG+HG+ R++K + +G QL KQK+ Sbjct: 1 MNRKNIAKGKLVRRFGINIFEQPKYDKLLKKKPNPPGMHGRSRRAKITEYGKQLIEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG ISE++ +IFKEA R G T NL++ LE R+D +VYRA F + ARQ V+H Sbjct: 61 KFTYG-ISERQLTNIFKEARRQHGVTGDNLLALLERRIDNVVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D+I+VK+K K + S +E + R +P +I VN D++ Sbjct: 120 GIIMLNGRRVTIPSITLRANDIIQVKEKDSLKKLVRSNIEKTSTL-RKLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R PS +D P + ++VE+YS+ Sbjct: 179 NVKITRPPS--RD-EIPTLANEQMIVEYYSK 206 >gi|75764761|ref|ZP_00744159.1| SSU ribosomal protein S4P [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487751|gb|EAO51569.1| SSU ribosomal protein S4P [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 212 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPNQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 R 181 R Sbjct: 178 R 178 >gi|289665160|ref|ZP_06486741.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669367|ref|ZP_06490442.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 208 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 117/203 (57%), Gaps = 10/203 (4%) Query: 10 KIDRRIGENL-WGRPKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L P ++++ PG HG RK K S + QLR KQK+K+ YG + Sbjct: 10 KLARREGADLSLKSPARALDSKCKLEQKPGQHGAARKGKLSDYATQLREKQKVKRIYG-L 68 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 E++FR+ +K+A +G+T L+ LE+RLD + YR F T AARQ V+HR VLVNG Sbjct: 69 LERQFRNYYKKASTKKGNTGEILLQLLETRLDNVCYRMGFAVTRPAARQLVSHRGVLVNG 128 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIP 183 +SVN+ SY+ K GD I + +K+++ V EA +AE+ P ++ V+ F +P Sbjct: 129 KSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVDSKKFSGVFKAVP 188 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 D+P + L+VE YS+ Sbjct: 189 DR-ADLPSDI--NEALIVELYSK 208 >gi|242278683|ref|YP_002990812.1| ribosomal protein S4 [Desulfovibrio salexigens DSM 2638] gi|259495273|sp|C6C1B0|RS4_DESAD RecName: Full=30S ribosomal protein S4 gi|242121577|gb|ACS79273.1| ribosomal protein S4 [Desulfovibrio salexigens DSM 2638] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K ++ RR GE L+ + K R Y PG+ G+ RK K S + +QLR Sbjct: 1 MARYTKAKCRLCRREGEKLFIKGDRCFTDKCSYERRPYAPGIAGRMRK-KMSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FRS FK AD +G T NL+ LE+RLD VYR F + ARQ Sbjct: 60 KQKVRRMYG-VLEGQFRSYFKRADGMKGVTGANLLMLLETRLDNTVYRLGFANSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H NGR VN+ S K GDVIEV+++S+++ + EA + +A R PE++ + Sbjct: 119 LVKHGIFTKNGRRVNVPSMHVKPGDVIEVREESRKIPVIAEAQEVIARRGCPEWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P+ +D+ +P+ Q L+VE YS+ Sbjct: 179 NFKGEVKAMPTR-EDIQFPINEQ--LIVELYSK 208 >gi|313158250|gb|EFR57652.1| ribosomal protein S4 [Alistipes sp. HGB5] Length = 202 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 118/209 (56%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M K K KI R+ GE ++G K + R++ PG HG R++ K S +G QL KQK K Sbjct: 1 MGKYIGPKSKIARKFGEAIYGADKV-LEKRNFPPGQHGLARKRKKVSEYGTQLSEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F + +A R G T NL+ LE RLD +VYR PT AARQ V+H Sbjct: 60 YTYG-LLEKQFARTYDQAARMGGITGENLLKLLECRLDNVVYRLGIAPTRAAARQLVSHC 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVA 177 H+ VNG VNI SY + GDV+ V++KSK L V+ AS LA Y + DN M Sbjct: 119 HICVNGNVVNIPSYSLRAGDVVSVREKSKSL-EVISAS-LAGGSKSRYAWLEWDNASMSG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F++ P +++P + Q L+VE YS+ Sbjct: 177 KFLQKPER-EEIPENIKEQ--LIVELYSK 202 >gi|146281194|ref|YP_001171347.1| 30S ribosomal protein S4 [Pseudomonas stutzeri A1501] gi|172045574|sp|A4VHQ4|RS4_PSEU5 RecName: Full=30S ribosomal protein S4 gi|145569399|gb|ABP78505.1| ribosomal protein S4 [Pseudomonas stutzeri A1501] Length = 206 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIET-PPGVHGQRR-GRLSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ K GDV+ V++K + + +A +L A+R E++ V+ D Sbjct: 118 VSHKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDADK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NENLIVELYSK 206 >gi|313665172|ref|YP_004047043.1| ribosomal protein S4 [Mycoplasma leachii PG50] gi|312949285|gb|ADR23881.1| ribosomal protein S4 [Mycoplasma leachii PG50] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 121/209 (57%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 MS+ S K RR G ++ G+ S R PG HG+ R K K S +G QL+ KQK Sbjct: 1 MSRFIGSTFKKSRRFGFSILETGKEFSKGKKRITTPGQHGKERAKVKVSEYGQQLQEKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K YG +SE++FR+ F +A + +G N + LESRLD IVYR F T ARQ VN Sbjct: 61 VKFMYG-LSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLVN 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H H+LVNG+ V+I SY GD++EVK K+ VLEA Q E + E++ VN + + Sbjct: 120 HGHILVNGKKVDIPSYLLSVGDLVEVKSSMKKNEKVLEALQNNEATL-EFVKVNKNEVKG 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FVR+P ++ + +L+VE+Y+R Sbjct: 179 EFVRLPER-NELNSEI--SESLIVEWYNR 204 >gi|261867278|ref|YP_003255200.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412610|gb|ACX81981.1| hypothetical protein D11S_0571 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 206 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG HG R K + S +G QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDIAPGQHGAR-KPRLSDYGSQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD IVYR F T ARQ V Sbjct: 60 KVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNIVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LAE ++ P ++ V+ M Sbjct: 119 SHKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQKEKPTWLEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P D+ + +L+VE YS+ Sbjct: 179 EGVLKRVPER-SDLSADI--NEHLIVELYSK 206 >gi|261337327|ref|ZP_05965211.1| ribosomal protein S4 [Bifidobacterium gallicum DSM 20093] gi|270277700|gb|EFA23554.1| ribosomal protein S4 [Bifidobacterium gallicum DSM 20093] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T + +++ LE+RLD +V RA T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGQTGNAMLTDLETRLDALVLRAGIARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+VK KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNIVDRPSYRVKPGQTIQVKPKSQTMVPFQIAAEGVHRDVLPPVPGYLDVNLPSLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +++P V +Q VVEFY+R Sbjct: 184 LTRKPEA-EEIPVQVNIQ--YVVEFYAR 208 >gi|148652261|ref|YP_001279354.1| 30S ribosomal protein S4 [Psychrobacter sp. PRwf-1] gi|172048490|sp|A5WCL3|RS4_PSYWF RecName: Full=30S ribosomal protein S4 gi|148571345|gb|ABQ93404.1| SSU ribosomal protein S4P [Psychrobacter sp. PRwf-1] Length = 213 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 128/218 (58%), Gaps = 17/218 (7%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ G PG HG R +K S + LQLR K Sbjct: 1 MARYIGPKLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGNTR-NKASEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K+ YG + E++F + +KE+ R+RG T +L+ LE RLD +VYR F T ARQ Sbjct: 60 QKVKRMYG-VLERQFANYYKESARARGATGEHLLQMLERRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVN--GRS----VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYI 168 V+HR V++ GR VNI S + ++GDVI + +K+K+ + A +LA +R +PE++ Sbjct: 119 VSHRAVMIKKAGRDEFVRVNIPSIQVQDGDVIAIHEKAKEQLRIKNAIELATQRGIPEWL 178 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+H M TF + P + D+P + +L+VE YS+ Sbjct: 179 EVDHSKMQGTFKQAPDRI-DLPAEIT--ESLIVELYSK 213 >gi|83319988|ref|YP_424224.1| 30S ribosomal protein S4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90101693|sp|Q2SSN9|RS4_MYCCT RecName: Full=30S ribosomal protein S4 gi|83283874|gb|ABC01806.1| 30S ribosomal protein S4 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 121/209 (57%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 MS+ S K RR G ++ G+ S R PG HG+ R K K S +G QL+ KQK Sbjct: 1 MSRFIGSTFKKSRRFGFSILETGKEFSKGKKRITTPGQHGKERAKVKVSEYGQQLQEKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K YG +SE++FR+ F +A + +G N + LESRLD IVYR F T ARQ VN Sbjct: 61 VKFMYG-LSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLVN 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H H+LVNG+ V+I SY GD++EVK K+ VLEA Q E + E++ VN + + Sbjct: 120 HGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQNNEATL-EFVKVNKNEVKG 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FVR+P ++ + +L+VE+Y+R Sbjct: 179 EFVRLPER-NELNSEI--SESLIVEWYNR 204 >gi|33152930|ref|NP_874283.1| 30S ribosomal protein S4 [Haemophilus ducreyi 35000HP] gi|41017830|sp|Q7VKF7|RS4_HAEDU RecName: Full=30S ribosomal protein S4 gi|33149155|gb|AAP96672.1| 30S ribosomal protein S4 [Haemophilus ducreyi 35000HP] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 125/215 (58%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV--------NTRSYGPGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L+ KS V N PG HG R K + S +G QL Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIESKCRNRLDVAPGQHGAR-KPRLSDYGSQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T A Sbjct: 58 REKQKVRRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 RQ V+H+ ++VNGR VNI SY+ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 117 RQLVSHKSIVVNGRVVNIPSYQVSVDDVVTVREKSKKQARIKASLELASQREKPTWLEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + +L+VE YS+ Sbjct: 177 AVKMEGVFKRTPER-SDLSADI--NEHLIVELYSK 208 >gi|289209305|ref|YP_003461371.1| ribosomal protein S4 [Thioalkalivibrio sp. K90mix] gi|288944936|gb|ADC72635.1| ribosomal protein S4 [Thioalkalivibrio sp. K90mix] Length = 206 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + ++ + T+ PG HG+RR ++ S + +QLR KQ Sbjct: 1 MARYIGPKCKLSRREGVDLGLKSRARALETKCKLDKAPGQHGERR-TRLSDYAVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A + +G T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KLRRIYG-VLEKQFRNYYKKAAQRKGSTGENLLKLLEGRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNM 175 +HR VLVNG+ VNI +Y+ + DV+ +++K+++ + ++ LAE+ P ++ V+ Sbjct: 119 SHRAVLVNGQVVNIAAYQVQPSDVVSIREKARKQVRIQDSMTLAEQSGFPSWVEVDTSKF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF IP D+P + +LVVE YS+ Sbjct: 179 EGTFKAIPDR-SDLPADI--NESLVVELYSK 206 >gi|331701254|ref|YP_004398213.1| 30S ribosomal protein S4 [Lactobacillus buchneri NRRL B-30929] gi|329128597|gb|AEB73150.1| ribosomal protein S4 [Lactobacillus buchneri NRRL B-30929] Length = 203 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRSKLSEYGLQLHEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLEERLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KSK L + +A + A P+Y+S + D + + Sbjct: 119 HITVDGKRVDIPSYEVQPGQVISVREKSKDLQVIKDAVE-AVVGRPQYVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 178 VRLPQREE---LDADIDESLIVEYYNK 201 >gi|261749446|ref|YP_003257132.1| 30S ribosomal protein S4 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497539|gb|ACX83989.1| 30S ribosomal protein S4 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 202 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M+K K KI R+ GE ++G K R Y G HG RR+ K S + +QL KQK K Sbjct: 1 MAKYIGPKTKISRKFGECIYGEDKY-FERRKYPSGQHGNNRRRGKRSEYFIQLTEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F +F EA R +G T L+ ESRLD IV+R KF P+ +ARQ V+HR Sbjct: 60 YTYG-ILERQFEKLFLEAARKKGVTGELLLQACESRLDNIVFRLKFSPSRSSARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VN R VN+ S+R + GD I +++KSK+ +LE+ + E++ ++ NM F Sbjct: 119 HITVNDRIVNVPSFRLRPGDKIGIREKSKKHPVILESISNKVGSLVEWLILDEKNMFGVF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI K +P + Q L+VE YS+ Sbjct: 179 -RIMPKRKQIPENIKEQ--LIVELYSK 202 >gi|153004799|ref|YP_001379124.1| 30S ribosomal protein S4 [Anaeromyxobacter sp. Fw109-5] gi|171769305|sp|A7HBP4|RS4_ANADF RecName: Full=30S ribosomal protein S4 gi|152028372|gb|ABS26140.1| RNA-binding S4 domain protein [Anaeromyxobacter sp. Fw109-5] Length = 208 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQ R K S +G+QLR KQK+K+ YG + E FR ++ A ++G Sbjct: 30 KCAIERRPYPPGQHGQGR-VKFSEYGVQLREKQKVKRMYG-LLEAGFRHAYQNAAAAKGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +V+R F T ARQ V H H VNGR VNI SY C+ GD +E+ Sbjct: 88 TGENLLQTLELRLDNVVFRLGFADTRNEARQLVRHGHFKVNGRKVNIPSYLCRAGDKVEL 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + +S+++ + EA + + R VP ++ ++ T VR S +D+ P+ Q L+VE Sbjct: 148 RDRSRKVVRISEALEAVDRRGVPGWLELDKGGFKGT-VRTQPSREDITMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|197294230|ref|YP_001798771.1| 30S ribosomal protein S4 [Candidatus Phytoplasma australiense] gi|226699101|sp|B1V8Z1|RS4_PHYAS RecName: Full=30S ribosomal protein S4 gi|171853557|emb|CAM11423.1| 30S ribosomal protein S4 [Candidatus Phytoplasma australiense] Length = 198 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 119/207 (57%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S KI RR+ ++ K + R+Y PG HGQRR +K S +GLQL+ KQK++ Sbjct: 1 MSRYTGSTWKISRRLNYSITETGK-ELRKRAYAPGQHGQRR-AKISDYGLQLKEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+FR F+ A + +G + LESRLD IVYR F T ARQ VNH H Sbjct: 59 TYG-MSEKQFRKTFERASKLKGIHGEMFLVLLESRLDNIVYRLGFAKTRAQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISVNHDNMVATF 179 VLV G+ V+I SY K G I +++KSK L V E L + V +Y+S++ + + Sbjct: 118 VLVEGKKVDIASYSLKPGQTITLREKSKNLKIVEEV--LKNKFVRADYVSLD-KQLNGKY 174 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P K + + L+VEFY+R Sbjct: 175 VRYP---KRNEFLAEINEQLIVEFYNR 198 >gi|257483209|ref|ZP_05637250.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012437|gb|EGH92493.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 206 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 126/212 (59%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ V VNG++VN+ SY+ + GDV+ +++K+K +++A L A+R E++ V+ +N Sbjct: 118 VSHKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|153831469|ref|ZP_01984136.1| ribosomal protein S4 [Vibrio cholerae 623-39] gi|148873050|gb|EDL71185.1| ribosomal protein S4 [Vibrio cholerae 623-39] Length = 166 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 110/171 (64%), Gaps = 6/171 (3%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 HG RR + S +G+QLR KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RL Sbjct: 1 HGARR-GRLSEYGVQLREKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRL 58 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D +VYR F T ARQ V+H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A Sbjct: 59 DNVVYRMGFGATRAEARQLVSHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAA 118 Query: 157 SQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++AE R+ P +I V+ + M TF R+P D+ + Q L+VE YS+ Sbjct: 119 LEVAEQREKPTWIEVDVNTMEGTFKRMPER-SDLSADINEQ--LIVELYSK 166 >gi|320534363|ref|ZP_08034849.1| ribosomal protein S4 [Actinomyces sp. oral taxon 171 str. F0337] gi|320133405|gb|EFW25867.1| ribosomal protein S4 [Actinomyces sp. oral taxon 171 str. F0337] Length = 210 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ S + ++L+ KQ+++ YG I E + + +F+EA R +G T +L+ Sbjct: 34 RPYGPGEHGRARRRTESDYAVRLKEKQRLRAQYG-IREAQLQRVFEEARRGQGLTGESLV 92 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD +V R+ TI ARQ V HRH+LV+G+ V+ SYR K G I+V+ +S+ Sbjct: 93 ELLEMRLDALVLRSGIARTIAQARQDVVHRHILVDGKVVDRPSYRVKPGQTIQVRPRSQV 152 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + A+ A RD VPEY++V+ + + AT VR P K PV +VVE+YS Sbjct: 153 MVPFQVAAAGAHRDVLPPVPEYLNVDLEKLSATLVRRP---KRDEVPVTCDVQMVVEYYS 209 Query: 206 R 206 R Sbjct: 210 R 210 >gi|312865798|ref|ZP_07726020.1| ribosomal protein S4 [Streptococcus downei F0415] gi|311098673|gb|EFQ56895.1| ribosomal protein S4 [Streptococcus downei F0415] Length = 203 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNHRGKLSEYGMQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G +N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-LGEKQFRNLFVQATKIKEGTLGYNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATVGRSAFVSFDEEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P I + L+VEFY++ Sbjct: 178 TRLPE--RDEINPEINEA-LIVEFYNK 201 >gi|297623301|ref|YP_003704735.1| 30S ribosomal protein S4 [Truepera radiovictrix DSM 17093] gi|297164481|gb|ADI14192.1| ribosomal protein S4 [Truepera radiovictrix DSM 17093] Length = 205 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 120/202 (59%), Gaps = 11/202 (5%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K+ RR G NL PK + R Y PG HGQRR K S +G++LR KQK+++ Y ++SE Sbjct: 10 KLSRREGVNLAETPKVQKYMERRPYPPGQHGQRRSRKLSDYGVRLREKQKLRRLY-NLSE 68 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+F ++F EA R +G T + LESRLD +V+R T ARQFV HRH+LVNG+ Sbjct: 69 KQFSNLFAEAVRQQGATGGVFLQLLESRLDNVVFRLGIAHTRRQARQFVTHRHILVNGKV 128 Query: 128 VNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 V++ SYR + GD I V +S+ + S +EA + + ++ + +++ F R+PS Sbjct: 129 VDVPSYRVRPGDEIAVAPRSRSNEVIKSNVEARKRGR--LSPWLEFDSESLKGKFQRLPS 186 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 +D+ PV V+E+YSR Sbjct: 187 R-EDITVPV--NELQVIEYYSR 205 >gi|213419635|ref|ZP_03352701.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 184 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 117/186 (62%), Gaps = 7/186 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTR---SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHGAR-KPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVR 181 T+ R Sbjct: 179 EGTYKR 184 >gi|253575746|ref|ZP_04853081.1| 30S ribosomal protein S4 [Paenibacillus sp. oral taxon 786 str. D14] gi|251844789|gb|EES72802.1| 30S ribosomal protein S4 [Paenibacillus sp. oral taxon 786 str. D14] Length = 199 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G QL KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKDL--KRPFPPGQHGPNQRRKVSNYGAQLLEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G + LESRLD +VYR F + ARQ V+H H Sbjct: 59 MYG-LGEKQFRTLFEKAQHMPGIAGETFMILLESRLDNLVYRLGFANSRAGARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SYR GDVI ++++S+ L+SV EA + VP Y+ N + ++ Sbjct: 118 VTVNGKKVDIASYRVNVGDVIGLRERSRGLSSVKEALE-NRTHVPAYLEFNDTTLEGKYI 176 Query: 181 RIP--SSL-KDVPYPVIMQPNLVVEFYSR 206 R+P S L +D+ +VEFY+R Sbjct: 177 RLPERSELSQDI------DEKQIVEFYNR 199 >gi|326773291|ref|ZP_08232574.1| ribosomal protein S4 [Actinomyces viscosus C505] gi|326636521|gb|EGE37424.1| ribosomal protein S4 [Actinomyces viscosus C505] Length = 210 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ S + ++L+ KQ+++ YG I E + + +F+EA R +G T +L+ Sbjct: 34 RPYGPGEHGRARRRTESDYAVRLKEKQRLRAQYG-IREAQLQRVFEEARRGQGLTGESLV 92 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD +V R+ TI ARQ V HRH+LV+G+ V+ SYR K G I+V+ +S+ Sbjct: 93 ELLEMRLDALVLRSGIARTIAQARQDVVHRHILVDGKVVDRPSYRVKPGQTIQVRPRSQV 152 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + A+ A RD VPEY++V+ + + AT VR P K PV +VVE+YS Sbjct: 153 MVPFQVAAAGAHRDVLPPVPEYLNVDLEKLSATLVRRP---KRDEVPVTCDVQMVVEYYS 209 Query: 206 R 206 R Sbjct: 210 R 210 >gi|218281549|ref|ZP_03487978.1| hypothetical protein EUBIFOR_00543 [Eubacterium biforme DSM 3989] gi|218217338|gb|EEC90876.1| hypothetical protein EUBIFOR_00543 [Eubacterium biforme DSM 3989] Length = 202 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 4/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K RR+G ++ + R PG HG R+ K + +G+QL+ KQ+++ Sbjct: 1 MSRNTGSIWKKSRRLGFSVL-ETGEELTRRDTIPGQHGSPRRPKLTNYGIQLQEKQRIRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +SEK+F + + +A + G N + LESRLD IVYR F T A+RQ VNH H Sbjct: 60 TY-QLSEKQFYNTYLKASKKAGSAGENFLVMLESRLDNIVYRMGFARTRRASRQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I S++ K G VIE+++++K L+ + EA + A V +++ VN D T+V Sbjct: 119 VLVDGKKVDIPSFQVKPGQVIEIRERAKNLSVINEALEAATATV-DFVEVNKDAKKGTYV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P K++ + LVVEFY+R Sbjct: 178 RYPER-KELFTAQEINELLVVEFYNR 202 >gi|227550803|ref|ZP_03980852.1| 30S ribosomal protein S4 [Enterococcus faecium TX1330] gi|257878795|ref|ZP_05658448.1| ribosomal protein S4 [Enterococcus faecium 1,230,933] gi|257881433|ref|ZP_05661086.1| ribosomal protein S4 [Enterococcus faecium 1,231,502] gi|257885703|ref|ZP_05665356.1| ribosomal protein S4 [Enterococcus faecium 1,231,501] gi|257887941|ref|ZP_05667594.1| ribosomal protein S4 [Enterococcus faecium 1,141,733] gi|257890654|ref|ZP_05670307.1| ribosomal protein S4 [Enterococcus faecium 1,231,410] gi|257893257|ref|ZP_05672910.1| ribosomal protein S4 [Enterococcus faecium 1,231,408] gi|257896441|ref|ZP_05676094.1| ribosomal protein S4 [Enterococcus faecium Com12] gi|257899415|ref|ZP_05679068.1| ribosomal protein S4 [Enterococcus faecium Com15] gi|258615136|ref|ZP_05712906.1| 30S ribosomal protein S4 [Enterococcus faecium DO] gi|260558361|ref|ZP_05830557.1| ribosomal protein S4 [Enterococcus faecium C68] gi|261207068|ref|ZP_05921757.1| ribosomal protein S4 [Enterococcus faecium TC 6] gi|289565930|ref|ZP_06446370.1| 30S ribosomal protein S4 [Enterococcus faecium D344SRF] gi|293379587|ref|ZP_06625726.1| ribosomal protein S4 [Enterococcus faecium PC4.1] gi|293556844|ref|ZP_06675405.1| ribosomal protein S4 [Enterococcus faecium E1039] gi|293563783|ref|ZP_06678222.1| ribosomal protein S4 [Enterococcus faecium E1162] gi|293567853|ref|ZP_06679194.1| ribosomal protein S4 [Enterococcus faecium E1071] gi|294614629|ref|ZP_06694533.1| ribosomal protein S4 [Enterococcus faecium E1636] gi|294618566|ref|ZP_06698125.1| ribosomal protein S4 [Enterococcus faecium E1679] gi|294622064|ref|ZP_06701197.1| ribosomal protein S4 [Enterococcus faecium U0317] gi|314938819|ref|ZP_07846090.1| ribosomal protein S4 [Enterococcus faecium TX0133a04] gi|314943624|ref|ZP_07850378.1| ribosomal protein S4 [Enterococcus faecium TX0133C] gi|314948703|ref|ZP_07852076.1| ribosomal protein S4 [Enterococcus faecium TX0082] gi|314952153|ref|ZP_07855171.1| ribosomal protein S4 [Enterococcus faecium TX0133A] gi|314991873|ref|ZP_07857330.1| ribosomal protein S4 [Enterococcus faecium TX0133B] gi|314996586|ref|ZP_07861621.1| ribosomal protein S4 [Enterococcus faecium TX0133a01] gi|227180040|gb|EEI61012.1| 30S ribosomal protein S4 [Enterococcus faecium TX1330] gi|257813023|gb|EEV41781.1| ribosomal protein S4 [Enterococcus faecium 1,230,933] gi|257817091|gb|EEV44419.1| ribosomal protein S4 [Enterococcus faecium 1,231,502] gi|257821559|gb|EEV48689.1| ribosomal protein S4 [Enterococcus faecium 1,231,501] gi|257823995|gb|EEV50927.1| ribosomal protein S4 [Enterococcus faecium 1,141,733] gi|257827014|gb|EEV53640.1| ribosomal protein S4 [Enterococcus faecium 1,231,410] gi|257829636|gb|EEV56243.1| ribosomal protein S4 [Enterococcus faecium 1,231,408] gi|257833006|gb|EEV59427.1| ribosomal protein S4 [Enterococcus faecium Com12] gi|257837327|gb|EEV62401.1| ribosomal protein S4 [Enterococcus faecium Com15] gi|260075535|gb|EEW63841.1| ribosomal protein S4 [Enterococcus faecium C68] gi|260078696|gb|EEW66398.1| ribosomal protein S4 [Enterococcus faecium TC 6] gi|289162303|gb|EFD10163.1| 30S ribosomal protein S4 [Enterococcus faecium D344SRF] gi|291589438|gb|EFF21245.1| ribosomal protein S4 [Enterococcus faecium E1071] gi|291592531|gb|EFF24136.1| ribosomal protein S4 [Enterococcus faecium E1636] gi|291595179|gb|EFF26513.1| ribosomal protein S4 [Enterococcus faecium E1679] gi|291598362|gb|EFF29446.1| ribosomal protein S4 [Enterococcus faecium U0317] gi|291600928|gb|EFF31219.1| ribosomal protein S4 [Enterococcus faecium E1039] gi|291604264|gb|EFF33759.1| ribosomal protein S4 [Enterococcus faecium E1162] gi|292641803|gb|EFF59974.1| ribosomal protein S4 [Enterococcus faecium PC4.1] gi|313589275|gb|EFR68120.1| ribosomal protein S4 [Enterococcus faecium TX0133a01] gi|313593578|gb|EFR72423.1| ribosomal protein S4 [Enterococcus faecium TX0133B] gi|313595685|gb|EFR74530.1| ribosomal protein S4 [Enterococcus faecium TX0133A] gi|313597661|gb|EFR76506.1| ribosomal protein S4 [Enterococcus faecium TX0133C] gi|313641830|gb|EFS06410.1| ribosomal protein S4 [Enterococcus faecium TX0133a04] gi|313644875|gb|EFS09455.1| ribosomal protein S4 [Enterococcus faecium TX0082] Length = 203 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSGTGKE-LARRPYAPGQHGPNSRGKQSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRNLFVKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G VI V++KS+ + +V EA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYHVEVGQVISVREKSQNIVTVKEAVE-ATVGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D YP I + LVVE+Y++ Sbjct: 178 TRLPE--RDELYPEIDEA-LVVEYYNQ 201 >gi|297583620|ref|YP_003699400.1| 30S ribosomal protein S4 [Bacillus selenitireducens MLS10] gi|297142077|gb|ADH98834.1| ribosomal protein S4 [Bacillus selenitireducens MLS10] Length = 200 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K ++ R YGPG HG + K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LSKRPYGPGQHGPNSRRKVSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F+ A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFNTLFEAAGKLQGIHGENFMILLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G+ V+I SYR G I +++KS+ L V A ++ + +P Y+ + + + F Sbjct: 119 VTVDGKRVDIPSYRVAPGQSISLREKSRNLDVVKSAIEMND-FLPSYLEFDAEKLEGKFA 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RYPERSE---LPAEINEQLIVEWYSR 200 >gi|16803636|ref|NP_465121.1| 30S ribosomal protein S4 [Listeria monocytogenes EGD-e] gi|26399430|sp|Q8Y6T6|RS4_LISMO RecName: Full=30S ribosomal protein S4 gi|16411025|emb|CAC99674.1| ribosomal protein S4 [Listeria monocytogenes EGD-e] Length = 200 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + RG N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLRGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSS-FVPEYVTFDAEKLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLP---ERSELAAEINEAFIVEFYSR 200 >gi|26399543|sp|Q9S0Q9|RS4_SHEVI RecName: Full=30S ribosomal protein S4 gi|5913931|dbj|BAA84524.1| ribosomal protein S4 [Shewanella violacea] Length = 206 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R K++ S +G+QLR KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE Sbjct: 38 PGRHGAR-KTRLSEYGVQLREKQKVRRIYG-VLEKQFRNYYKDAARQKGNTGENLLTLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +RLD +VYR F T +RQ V+H+ +LVNG VNI S++ DVI +++KSK+ A + Sbjct: 96 TRLDNVVYRMGFGATRAESRQLVSHKSILVNGSVVNIPSFKVSASDVISIREKSKKQARI 155 Query: 154 LEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++A +R+ P ++ V++ M F R+P D+ + Q L+VE S+ Sbjct: 156 SASLEVASQREKPTWVEVDNTKMEGAFKRLPER-SDLSAEINEQ--LIVELCSK 206 >gi|157363469|ref|YP_001470236.1| 30S ribosomal protein S4 [Thermotoga lettingae TMO] gi|172045985|sp|A8F4T8|RS4_THELT RecName: Full=30S ribosomal protein S4 gi|157314073|gb|ABV33172.1| RNA-binding S4 domain protein [Thermotoga lettingae TMO] Length = 209 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 5/180 (2%) Query: 28 NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHN 87 + R Y PG HG R++ K S +G QLRAKQ M+ YG I E++F F++A GDT N Sbjct: 34 DKRPYAPGDHG-RQRGKLSQYGTQLRAKQVMRVIYG-IPERQFEHYFEKALGMSGDTREN 91 Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 L+ +ESR+D IVYR F + ARQ V H H VNG ++I SY+ + GD++EV++KS Sbjct: 92 LVRLVESRVDNIVYRLGFAISRRQARQLVTHGHFSVNGVKIDIPSYKLRPGDIVEVREKS 151 Query: 148 KQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + LA++ A + + +R ++ V+ D+ TF+R+P+ + PV +Q +VEFYSR Sbjct: 152 RSLAAIKHAVESSKDRTQVPWVEVDFDSYRGTFLRLPNLEEVTDLPVDVQA--IVEFYSR 209 >gi|255349010|ref|ZP_05381017.1| 30S ribosomal protein S4 [Chlamydia trachomatis 70] gi|255503549|ref|ZP_05381939.1| 30S ribosomal protein S4 [Chlamydia trachomatis 70s] Length = 209 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLLRKPNPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ +KE + + + + E RLD IVYR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAYKEVINKQRNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G I +K+KSK+LA V E+ L +D +P Y+S++ Sbjct: 120 VLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTES--LENKDQSSLPAYLSLDKAAFKG 177 Query: 178 TFVRIPSS---LKDVPYPVIMQPNLVVEFYS 205 V P +P PV + +++ EF S Sbjct: 178 ELVVAPELDQIASQLPLPVNV--SVICEFLS 206 >gi|325068848|ref|ZP_08127521.1| 30S ribosomal protein S4 [Actinomyces oris K20] Length = 207 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ S + ++L+ KQ+++ YG I E + + +F+EA R +G T +L+ Sbjct: 31 RPYGPGEHGRARRRTESDYAVRLKEKQRLRAQYG-IREAQLQRVFEEARRGQGLTGESLV 89 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD +V R+ TI ARQ V HRH+LV+G+ V+ SYR K G I+V+ +S+ Sbjct: 90 ELLEMRLDALVLRSGIARTIAQARQDVVHRHILVDGKVVDRPSYRVKPGQTIQVRPRSQV 149 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + A+ A RD VPEY++V+ + + AT VR P K PV +VVE+YS Sbjct: 150 MVPFQVAAAGAHRDVLPPVPEYLNVDLEKLSATLVRRP---KRDEVPVTCDVQMVVEYYS 206 Query: 206 R 206 R Sbjct: 207 R 207 >gi|327402758|ref|YP_004343596.1| 30S ribosomal protein S4P [Fluviicola taffensis DSM 16823] gi|327318266|gb|AEA42758.1| SSU ribosomal protein S4P [Fluviicola taffensis DSM 16823] Length = 203 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI RR + ++G P ++ R YGPG HG +RR K S + +QL KQK Sbjct: 1 MARYTGPKSKIARRFRDPIFG-PDKALDKRQYGPGQHGPNKRRGGKQSEYAIQLGEKQKA 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F ++FK+A +G T NL+ E RLD VYR + AARQ V+H Sbjct: 60 KYTYG-ILERQFSNLFKKASGMKGITGENLLQLCEMRLDNTVYRLGIANSRRAARQLVSH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +H++VNG VNI SY + GDV+ V++KSK L ++ + + +++ + Sbjct: 119 KHIVVNGEVVNIPSYTLRIGDVVSVREKSKSLEAITSSLTASTNKRYDWLDWDSATKSGK 178 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ IPS +D+ P ++ L+VE YS+ Sbjct: 179 FLSIPS--RDM-IPENIKEQLIVELYSK 203 >gi|256390172|ref|YP_003111736.1| 30S ribosomal protein S4 [Catenulispora acidiphila DSM 44928] gi|256356398|gb|ACU69895.1| ribosomal protein S4 [Catenulispora acidiphila DSM 44928] Length = 208 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG+ R + Y LQLR KQK + YG + EK+FR ++EA+R G Sbjct: 29 PKCPIEIRPYPPGEHGRGRTKENEYL-LQLREKQKTARIYG-VLEKQFRGYYEEANRKGG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T NL+ LESRLD +VYRA F + ARQ V H H+L+NG NI S R D++E Sbjct: 87 KTGENLLRILESRLDNVVYRAGFAKSRDHARQLVRHGHILINGHKANIPSMRVTPSDIVE 146 Query: 143 VKQKSKQLAS-VLEASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V+++S +L V+ ++ ER VP +I V M +P ++ D +Q L+ Sbjct: 147 VRKESLELTPFVVARAEAGERAVPAWIEVIPSKMRILVHSLPERAVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|114778798|ref|ZP_01453605.1| 30S ribosomal protein S4 [Mariprofundus ferrooxydans PV-1] gi|114550929|gb|EAU53493.1| 30S ribosomal protein S4 [Mariprofundus ferrooxydans PV-1] Length = 209 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K ++ RR GE L+ + K P+ R Y PG+HGQ R++K S +GLQLR Sbjct: 1 MARYLEAKCRLCRREGEKLFLKGGKCYSDKCPIERRPYAPGMHGQNRRTKVSDYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F +ADR G T NL+ LESRLD +VYR + ARQ Sbjct: 61 KQKVKRIYG-LQEKQFRGYFDDADRMPGITGLNLLQILESRLDNVVYRMGLASSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H+ + VNG VNI SYR G +E+ +K+ V A++ A R E++ V+ Sbjct: 120 IVRHKLLKVNGGIVNIPSYRVAVGSRLELVDGAKEQLRVNAATEAAGSRGAAEWLDVDLP 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P ++D I + L+VE YS+ Sbjct: 180 SRQGVYREMP--VRDQLDSNIRE-QLIVELYSK 209 >gi|163783136|ref|ZP_02178130.1| 30S ribosomal protein S4 [Hydrogenivirga sp. 128-5-R1-1] gi|159881470|gb|EDP74980.1| 30S ribosomal protein S4 [Hydrogenivirga sp. 128-5-R1-1] Length = 211 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 8/203 (3%) Query: 10 KIDRRIGENLWGRPKSP--VNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQKMKKYYGDI 65 K+DR+ G + G+ +P + R++ PG HG+ R+ K S +G++L KQK+K YG + Sbjct: 10 KLDRKFGVVVSGKKSAPRIMQRRNFPPGQHGRTKGRRRKLSEYGIRLMEKQKLKYLYGGL 69 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+F+ F A +S+ +T+ L+ LE RLD +VYR F T ARQ V H H+LVNG Sbjct: 70 REKQFKRYFDLAAKSKENTADVLLQLLERRLDNVVYRLGFATTRRQARQLVAHGHILVNG 129 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS 184 R V+I Y + GD+IEVK S+ + + E + R VPE++ ++ DN ++ P Sbjct: 130 RKVDIPHYEVEPGDIIEVKSSSRDIPFLKENLENIDPRSVPEWLELDKDNFRGKVLKNPE 189 Query: 185 SLKD-VPYPVIMQPNLVVEFYSR 206 + + + P+ +Q ++EFYS+ Sbjct: 190 GVAEYLEIPINVQ--YIIEFYSK 210 >gi|323341678|ref|ZP_08081911.1| 30S ribosomal protein S4 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464103|gb|EFY09296.1| 30S ribosomal protein S4 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 200 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 9/179 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG HG+ R+ K S +GLQLR KQ+++ YG ++EK+F + FK+A + G HN + Sbjct: 29 RDYAPGQHGKARRPKLSNYGLQLREKQRIRYTYG-VTEKQFYNTFKKASKLEGVAGHNFL 87 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYR T ARQ VNH H+LV+G+ V+I SY K G IEVK+ S+ Sbjct: 88 FMLESRLDNVVYRMNLSRTRRGARQLVNHGHILVDGKKVDIPSYIVKPGQTIEVKESSRS 147 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIP--SSLKDVPYPVIMQPNLVVEFYSR 206 +A++ ++ + A + +Y++ + D + R+P S L + LVVEFY+R Sbjct: 148 MAAIKDSLE-ANVSMVDYVTFDKDKFKGEYKRLPERSELNQE-----INEALVVEFYNR 200 >gi|312877392|ref|ZP_07737357.1| ribosomal protein S4 [Caldicellulosiruptor lactoaceticus 6A] gi|311795866|gb|EFR12230.1| ribosomal protein S4 [Caldicellulosiruptor lactoaceticus 6A] Length = 208 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H VNGR+VNI SY K GD IEV ++SK +E + A++ P+++ + + Sbjct: 119 LVTHAHFKVNGRTVNIPSYLVKVGDEIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGRVIALPTR-EDIDMPI--REHLIVELYSK 208 >gi|289641139|ref|ZP_06473307.1| ribosomal protein S4 [Frankia symbiont of Datisca glomerata] gi|289509080|gb|EFD30011.1| ribosomal protein S4 [Frankia symbiont of Datisca glomerata] Length = 208 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 108/186 (58%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQ R KQK + YG I EK+FR + EA+R G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRTKDSEYLLQKREKQKCARIYG-ILEKQFRGYYDEANRRTG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA F P+ AARQ V H HV+VNG V+I SYR E D++E Sbjct: 87 KTGDELLKILESRLDNVVYRAGFAPSRDAARQAVRHGHVVVNGGKVDIPSYRVSENDIVE 146 Query: 143 VKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 + K+++L + A + A +R P ++ V + +P+ + D +Q L+ Sbjct: 147 IAPKARELTPFIIARETAGQRTPPPWLEVIPSQLRVLVHSLPARQVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|315924067|ref|ZP_07920293.1| 30S ribosomal protein S4 [Pseudoramibacter alactolyticus ATCC 23263] gi|315622469|gb|EFV02424.1| 30S ribosomal protein S4 [Pseudoramibacter alactolyticus ATCC 23263] Length = 204 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 11/206 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M ++ + K RR G NL+G PK+ S +RR+ KPS + QL KQK+K Sbjct: 10 MGQKRKPRFKQCRRFGVNLYGNPKALDRKVS-------ERRRGKPSEYSQQLNEKQKVKA 62 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +I EK+ R +++A + G TS +L LESRLD +V R F TIF ARQ V H H Sbjct: 63 YY-NIREKQMRRYYEDAFKREGTTSLHLFRSLESRLDNLVLRMHFASTIFQARQMVGHGH 121 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR V+I SY+ + GD I +KQ S+ Q Y+ V+ + T+ Sbjct: 122 ILVNGRRVDIPSYQVRPGDTISLKQASRSNEMFKANFQDNAGAAVPYVCVDENQFSGTYE 181 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ ++ LV+EFYSR Sbjct: 182 RLPERGE---IPIDVEDQLVIEFYSR 204 >gi|254426804|ref|ZP_05040511.1| ribosomal protein S4 [Alcanivorax sp. DG881] gi|196192973|gb|EDX87932.1| ribosomal protein S4 [Alcanivorax sp. DG881] Length = 210 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 12/214 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYGPGLHGQ------RRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + P+ ++ GQ RR ++ S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKAEQAPGQAAGASGRRPARLSDYGVQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FRS +K+A S+G T L+ LE RLD +VYR F T AR Sbjct: 61 EKQKVRRTYG-VLEKQFRSYYKKAAASKGATGEVLLQLLEGRLDNVVYRMGFGSTRSEAR 119 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+HR +LVNG+SVN+ SY+ K GD I V++KSK V A +LA +R +I V+ Sbjct: 120 QLVSHRAILVNGQSVNVASYQVKPGDQINVREKSKNQLRVKNAMELAQQRGFMPWIEVDD 179 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T+ P + + P + NL+VE YS+ Sbjct: 180 KKLEGTYKAKP---ERIDLPAEINENLIVELYSK 210 >gi|330827906|ref|YP_004390858.1| 30S ribosomal protein S4 [Aeromonas veronii B565] gi|328803042|gb|AEB48241.1| 30S ribosomal protein S4 [Aeromonas veronii B565] Length = 206 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K++ S +G+QLR Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +++A R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++K+K+ A + + ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|119953396|ref|YP_945605.1| 30S ribosomal protein S4 [Borrelia turicatae 91E135] gi|254764571|sp|A1R043|RS4_BORT9 RecName: Full=30S ribosomal protein S4 gi|119862167|gb|AAX17935.1| SSU ribosomal protein S4P [Borrelia turicatae 91E135] Length = 208 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+++ +K K+ RR G N++ +PK + + PG+HG+ R++K + +G QL KQK+ Sbjct: 1 MNRKNIAKGKLVRRFGVNIFEQPKYDKLLKKKPNAPGMHGRSRRAKITEYGKQLIEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ +IFKE+ R G T NL++ LE R+D +VYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNIFKESRRQHGVTGDNLLALLERRIDNVVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D+I+VK+K K + S +E + R +P +I VN D++ Sbjct: 120 GIIMLNGRRVTIPSITLRANDMIQVKEKDRLKKLVRSNIEKTSTL-RKLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R PS +D P + ++VE+YS+ Sbjct: 179 NVKITRPPS--RD-EIPTLANEQMIVEYYSK 206 >gi|255507228|ref|ZP_05382867.1| 30S ribosomal protein S4 [Chlamydia trachomatis D(s)2923] gi|289525669|emb|CBJ15150.1| SSU ribosomal protein S4P [Chlamydia trachomatis Sweden2] gi|296435236|gb|ADH17414.1| 30S ribosomal protein S4 [Chlamydia trachomatis E/150] gi|296438955|gb|ADH21108.1| 30S ribosomal protein S4 [Chlamydia trachomatis E/11023] Length = 209 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K++I RR G N++GR ++P+ + PG HG +RK K Y GLQL KQK+K Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLLRKPNPPGQHGMQRKKKSDY-GLQLEEKQKLKA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+ +KE + + + + E RLD I+YR F TIFAA+Q V+H H Sbjct: 60 CYGMILEKQLVKAYKEVINKQRNVAQMFLEKFECRLDNIIYRLGFAKTIFAAQQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 VLVNG+ V+ S+ + G I +K+KSK+LA V E+ L +D +P Y+S++ Sbjct: 120 VLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTES--LENKDQSSLPAYLSLDKAAFKG 177 Query: 178 TFVRIPSS---LKDVPYPVIMQPNLVVEFYS 205 V P +P PV + +++ EF S Sbjct: 178 ELVVAPELDQIASQLPLPVNV--SVICEFLS 206 >gi|224476810|ref|YP_002634416.1| 30S ribosomal protein S4 [Staphylococcus carnosus subsp. carnosus TM300] gi|254764610|sp|B9DN91|RS4_STACT RecName: Full=30S ribosomal protein S4 gi|222421417|emb|CAL28231.1| 30S ribosomal protein S4 [Staphylococcus carnosus subsp. carnosus TM300] Length = 201 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 6/205 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S + +QLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYAIQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++F + F EA + G N + L RLD +VY T ARQ V H H Sbjct: 60 LYG-ITERQFHNTFIEAGKQSGVHGENFMRLLARRLDAVVYALGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G V+ V++KS++L + E+ ++ VPEY+ + + + TFV Sbjct: 119 IEVDGKRVNIPSYTLKPGQVVSVREKSQKLDIIQESVEI-NNFVPEYLDFDEEKLSGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P + P + L+VE+YS Sbjct: 178 RVPERSE---LPAEINEQLIVEYYS 199 >gi|126697668|ref|YP_001086565.1| 30S ribosomal protein S4 [Clostridium difficile 630] gi|254973759|ref|ZP_05270231.1| 30S ribosomal protein S4 [Clostridium difficile QCD-66c26] gi|255091149|ref|ZP_05320627.1| 30S ribosomal protein S4 [Clostridium difficile CIP 107932] gi|255099260|ref|ZP_05328237.1| 30S ribosomal protein S4 [Clostridium difficile QCD-63q42] gi|255305043|ref|ZP_05349215.1| 30S ribosomal protein S4 [Clostridium difficile ATCC 43255] gi|255312803|ref|ZP_05354386.1| 30S ribosomal protein S4 [Clostridium difficile QCD-76w55] gi|255515562|ref|ZP_05383238.1| 30S ribosomal protein S4 [Clostridium difficile QCD-97b34] gi|255648657|ref|ZP_05395559.1| 30S ribosomal protein S4 [Clostridium difficile QCD-37x79] gi|255654190|ref|ZP_05399599.1| 30S ribosomal protein S4 [Clostridium difficile QCD-23m63] gi|260681874|ref|YP_003213159.1| 30S ribosomal protein S4 [Clostridium difficile CD196] gi|260685472|ref|YP_003216605.1| 30S ribosomal protein S4 [Clostridium difficile R20291] gi|296449771|ref|ZP_06891540.1| 30S ribosomal protein S4 [Clostridium difficile NAP08] gi|296877835|ref|ZP_06901857.1| 30S ribosomal protein S4 [Clostridium difficile NAP07] gi|122974220|sp|Q18CI6|RS4_CLOD6 RecName: Full=30S ribosomal protein S4 gi|115249105|emb|CAJ66916.1| 30S ribosomal protein S4 [Clostridium difficile] gi|260208037|emb|CBA60237.1| 30S ribosomal protein S4 [Clostridium difficile CD196] gi|260211488|emb|CBE01627.1| 30S ribosomal protein S4 [Clostridium difficile R20291] gi|296261369|gb|EFH08195.1| 30S ribosomal protein S4 [Clostridium difficile NAP08] gi|296431135|gb|EFH16960.1| 30S ribosomal protein S4 [Clostridium difficile NAP07] Length = 207 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 5/183 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ RK K S +GLQLR KQK+K+ YG + E +FR++++ A+ G Sbjct: 30 KCAIVKRNYAPGQHGQGRK-KVSNYGLQLREKQKVKRIYG-VLETQFRNLYERAENMPGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 NL+S LE RLD +VYR + ARQ V H H +NG V+I S K GDVIEV Sbjct: 88 AGENLLSLLERRLDNVVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEV 147 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K+KS+ A ++ R P+++ N + M A V +P+ +D+ + +L++E Sbjct: 148 KEKSRSSAKFKNLVEVNSRIAPKWLEANVEGMTAKVVGVPTR-EDIDLEI--AEHLIIEL 204 Query: 204 YSR 206 YS+ Sbjct: 205 YSK 207 >gi|78484663|ref|YP_390588.1| ribosomal protein S4 [Thiomicrospira crunogena XCL-2] gi|90101733|sp|Q31IV9|RS4_THICR RecName: Full=30S ribosomal protein S4 gi|78362949|gb|ABB40914.1| SSU ribosomal protein S4P [Thiomicrospira crunogena XCL-2] Length = 206 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG RK + + +GLQLR KQK+++ YG + EKKFR +KEADR +G T NL+ LE Sbjct: 38 PGQHGAGRK-RVTEYGLQLREKQKVRRIYG-VLEKKFRLYYKEADRRKGSTGVNLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T ARQ V+H+ + VNG+SVNI SY GDVI +++KS+ + + Sbjct: 96 SRLDNVVYRMGFASTRAEARQLVSHKSIQVNGQSVNIPSYEVSAGDVISIREKSRNQSRI 155 Query: 154 LEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +L A+ ++ V+ F +P D+ + NL+VE YS+ Sbjct: 156 AAALELSAQAGNVGWVEVDSSKFEGVFKTVPDR-SDLSADI--SENLIVELYSK 206 >gi|283782865|ref|YP_003373619.1| ribosomal protein S4 [Gardnerella vaginalis 409-05] gi|297242860|ref|ZP_06926798.1| ribosomal protein S4 [Gardnerella vaginalis AMD] gi|283442009|gb|ADB14475.1| ribosomal protein S4 [Gardnerella vaginalis 409-05] gi|296889071|gb|EFH27805.1| ribosomal protein S4 [Gardnerella vaginalis AMD] Length = 208 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-ISEKQLRAAYEKGTHTAGQTGDAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+V+ KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNLVDRPSYRVKPGQTIQVRAKSQTMVPFQMAAEGVHRDVLPAVPGYLDVNLASLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +P V +Q VVE+Y+R Sbjct: 184 LTRKP-EVDQIPVEVNIQ--YVVEYYAR 208 >gi|86739322|ref|YP_479722.1| 30S ribosomal protein S4 [Frankia sp. CcI3] gi|123751487|sp|Q2JFE9|RS4_FRASC RecName: Full=30S ribosomal protein S4 gi|86566184|gb|ABD09993.1| SSU ribosomal protein S4P [Frankia sp. CcI3] Length = 209 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 109/194 (56%), Gaps = 23/194 (11%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQ R KQK + YG + EK+FR + EA+R G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRTKDSEYLLQKREKQKCARIYG-VLEKQFRGYYDEANRRAG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYR F P+ AARQ V H HV VNGR V+I SYR E D++E Sbjct: 87 KTGDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSYRISENDIVE 146 Query: 143 VKQKSKQLASVLEASQLA--ERDVPEYISVNHDNMVATFVRIPSSLK----DVPYPVIM- 195 + K+++L + A + A R VP ++ V IPS L+ +P ++ Sbjct: 147 IAPKARELTPFIVARETAGQGRAVPAWLEV-----------IPSQLRILVHSLPARQVID 195 Query: 196 ---QPNLVVEFYSR 206 Q L+VE YS+ Sbjct: 196 TQVQEQLIVELYSK 209 >gi|110833282|ref|YP_692141.1| 30S ribosomal protein S4 [Alcanivorax borkumensis SK2] gi|123149715|sp|Q0VSH9|RS4_ALCBS RecName: Full=30S ribosomal protein S4 gi|110646393|emb|CAL15869.1| 30S ribosomal protein S4 [Alcanivorax borkumensis SK2] Length = 210 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 12/214 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYGPGLHGQ------RRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + P+ ++ GQ RR ++ S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKADQAPGQAAGASGRRPARLSDYGVQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FRS +K+A S+G T L+ LE RLD +VYR F T AR Sbjct: 61 EKQKVRRTYG-VLEKQFRSYYKKAAASKGATGEVLLQLLEGRLDNVVYRMGFGSTRSEAR 119 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+HR +LVNG+SVN+ SY+ K GD I V++KSK V A +LA +R +I V+ Sbjct: 120 QLVSHRAILVNGQSVNVASYQVKPGDQINVREKSKNQLRVKNAMELAQQRGFMPWIEVDD 179 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T+ P + P + NL+VE YS+ Sbjct: 180 KKLEGTYKAKPER---IDLPAEINENLIVELYSK 210 >gi|227524306|ref|ZP_03954355.1| 30S ribosomal protein S4 [Lactobacillus hilgardii ATCC 8290] gi|227088537|gb|EEI23849.1| 30S ribosomal protein S4 [Lactobacillus hilgardii ATCC 8290] Length = 231 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+ K S +GLQL+ KQK++ Sbjct: 29 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRQKLSEYGLQLKEKQKLRY 87 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD IVYR T ARQ VNH Sbjct: 88 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLERRLDNIVYRLGLATTRRQARQLVNHG 146 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G V+ V++KSK L V A + A P+Y++ + D + + Sbjct: 147 HITVDGKRVDIPSYEVKTGQVVSVREKSKDLQVVKNAVE-AVVGRPQYVNFDADKLEGSL 205 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 206 VRLPQREE---LDADIDESLIVEYYNK 229 >gi|164686553|ref|ZP_02210581.1| hypothetical protein CLOBAR_00120 [Clostridium bartlettii DSM 16795] gi|164604422|gb|EDQ97887.1| hypothetical protein CLOBAR_00120 [Clostridium bartlettii DSM 16795] Length = 206 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 12/186 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ RK K S +GLQLR KQK+K+ YG + E +FR++++ A++ G Sbjct: 30 KCAIVKRNYAPGQHGQGRK-KLSNYGLQLREKQKVKRIYG-VLETQFRNLYERAEKMSGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +V+R + ARQ V H H +NG+ V+I S K GDVI V Sbjct: 88 TGENLLCLLEERLDNVVFRMGLANSRKEARQLVTHAHFTLNGKKVDIPSLTVKVGDVIAV 147 Query: 144 KQKSKQLA---SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 K+ SK A +++EA+++A P ++ VN + M A V +P+ +D+ + +L+ Sbjct: 148 KETSKSSAKFKALVEANKVA----PNWLDVNLEEMSAKVVALPTR-EDIDIEI--AEHLI 200 Query: 201 VEFYSR 206 +E YS+ Sbjct: 201 IELYSK 206 >gi|303247017|ref|ZP_07333293.1| ribosomal protein S4 [Desulfovibrio fructosovorans JJ] gi|302491724|gb|EFL51607.1| ribosomal protein S4 [Desulfovibrio fructosovorans JJ] Length = 208 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K +I RR G L+ + K R Y PG HG+ RK K S + + LR Sbjct: 1 MARYTEAKCRICRREGAKLFLKGDRCYTDKCAYERRPYAPGQHGRIRK-KMSDYAVMLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F+ AD +G T NL+ FLE R+D ++YR F + ARQ Sbjct: 60 KQKTRRMYG-ILEGQFRAYFQRADMKKGVTGENLLCFLERRMDNVIYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H VNGR V I S + K GDVIEV+++++Q + EA Q +A R P ++ V+ + Sbjct: 119 LVRHGIFTVNGRRVTIPSLQVKVGDVIEVRERNRQSPIIQEAQQVIARRGCPAWLEVDGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +DV +P+ Q L+VE YS+ Sbjct: 179 KLKGKVNALPTR-EDVQFPINEQ--LIVELYSK 208 >gi|118602237|ref|YP_903452.1| SSU ribosomal protein S4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|152112257|sp|A1AVM4|RS4_RUTMC RecName: Full=30S ribosomal protein S4 gi|118567176|gb|ABL01981.1| SSU ribosomal protein S4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 208 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRA 54 M++ K+ RR G +L+ + S N PG+HG R+ K + +GLQLR Sbjct: 1 MARYTGPTCKLARREGTDLFLKSGIRSLDSKCNVTQL-PGMHGANARRQKGTEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FR +K+A + +G T NL+S LE RLD +VYR F T ARQ Sbjct: 60 KQKVRRIYG-ILEKQFRLYYKKASQKKGSTGENLLSLLECRLDNVVYRMGFGSTRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISVNHD 173 V+H+ +L+NG VNI SY+ D I +++K+K+ + + A +LAE+ P+++ ++H Sbjct: 119 LVSHKSILMNGLVVNIPSYQVSVNDEISIREKAKKQSRIQLALELAEQSTQPQWLDIDHK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P+ +D +Q +L+VE YS+ Sbjct: 179 ALKGVFKNVPA--RD-ELSSDIQEHLIVELYSK 208 >gi|312130523|ref|YP_003997863.1| ssu ribosomal protein s4p [Leadbetterella byssophila DSM 17132] gi|311907069|gb|ADQ17510.1| SSU ribosomal protein S4P [Leadbetterella byssophila DSM 17132] Length = 201 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE + G P + ++Y PG HG+ R+ K S + LQL KQK+K Sbjct: 1 MARYTGPKSKISRKFGEAVLG-PSKALAKKAYPPGQHGRGRRGKKSDYALQLLEKQKIKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F IF A G T NLI ESRLD IVYR PT AARQ V H+H Sbjct: 60 TYG-VLERQFARIFHLAGVKEGQTGENLIKLCESRLDNIVYRLGIAPTRRAARQLVTHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +L++G NI S K G + V++KSK L ++ A+ L ++ ++ + F+ Sbjct: 119 ILLDGEVSNIPSILVKPGQKVAVREKSKALDTITTATSLNAAKKYGWLEFDNAELTGLFI 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P L+ +P +Q VVE Y++ Sbjct: 179 NYP-DLEQIPEQFNVQA--VVELYNK 201 >gi|225574732|ref|ZP_03783342.1| hypothetical protein RUMHYD_02809 [Blautia hydrogenotrophica DSM 10507] gi|225038061|gb|EEG48307.1| hypothetical protein RUMHYD_02809 [Blautia hydrogenotrophica DSM 10507] Length = 197 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ +K+AD+ +G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYKKADKMQGQTGENLMVMLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 IV+R F T ARQ V+H+H+ VNG+ VNI SY K GDVIE+K+K K + +LE Sbjct: 92 IVFRMGFARTRREARQIVDHKHITVNGKVVNIPSYLVKAGDVIEIKEKCKGSERYKGILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ V+ + + T +P+ + DVP + L+VE YS+ Sbjct: 152 VT--GGRLVPEWLDVDQEALRGTVKELPTRDIIDVP----VNEMLIVELYSK 197 >gi|298253340|ref|ZP_06977132.1| ribosomal protein S4 [Gardnerella vaginalis 5-1] gi|297532735|gb|EFH71621.1| ribosomal protein S4 [Gardnerella vaginalis 5-1] Length = 236 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 33 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 92 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ISEK+ R+ +++ + G T +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 93 G-ISEKQLRAAYEKGTHTAGQTGDAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 151 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+V+ KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 152 VDGNLVDRPSYRVKPGQTIQVRAKSQTMVPFQMAAEGVHRDVLPAVPGYLDVNLASLKAT 211 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +P V +Q VVE+Y+R Sbjct: 212 LTRKP-EVDQIPVEVNIQ--YVVEYYAR 236 >gi|146308899|ref|YP_001189364.1| 30S ribosomal protein S4 [Pseudomonas mendocina ymp] gi|172046040|sp|A4XZ66|RS4_PSEMY RecName: Full=30S ribosomal protein S4 gi|145577100|gb|ABP86632.1| SSU ribosomal protein S4P [Pseudomonas mendocina ymp] Length = 206 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +K+A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGFGATRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VN+ SY+ K GDV+ V++KSK + +A +L A+R E++ V+ + Sbjct: 118 VSHKAISVNGQTVNVPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDAEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-GDLSADI--NESLIVELYSK 206 >gi|255283706|ref|ZP_05348261.1| ribosomal protein S4 [Bryantella formatexigens DSM 14469] gi|255265771|gb|EET58976.1| ribosomal protein S4 [Bryantella formatexigens DSM 14469] Length = 197 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/172 (44%), Positives = 108/172 (62%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ +K+A+R G T NL++ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYKKAERMPGMTGANLMTMLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +++R F T ARQ V+H+HVLVNG+ VNI SY K GD +E+K+K K + +LE Sbjct: 92 VIFRLGFARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTVEIKEKCKGFQRYKEILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A+ R VP+++ V+ +N+ AT +P+ DVP + L+VE YS+ Sbjct: 152 ATN--GRLVPDWLDVDTENLKATVKELPAREAIDVP----VNEMLIVELYSK 197 >gi|149376660|ref|ZP_01894419.1| ribosomal protein S4 [Marinobacter algicola DG893] gi|149359033|gb|EDM47498.1| ribosomal protein S4 [Marinobacter algicola DG893] Length = 206 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 121/212 (57%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + S N + PG+HG RR + S +G+QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIET-PPGMHGARR-GRLSEYGVQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLEKQFRNYYKEAARIKGATGENLLQLLEGRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDN 174 V+H+ +LVN + VNI SY+ + GDV+ V++K+K V A L+ P ++ V+ Sbjct: 118 VSHKAILVNDKLVNIPSYQVRPGDVVSVREKAKNQLRVKGALDLSSSRAPVSWVEVDASK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + +P + P + NL+VE YS+ Sbjct: 178 MSGVYRSVPERTE---LPADINENLIVELYSK 206 >gi|145588266|ref|YP_001154863.1| ribosomal protein S4 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189045391|sp|A4SUY5|RS4_POLSQ RecName: Full=30S ribosomal protein S4 gi|145046672|gb|ABP33299.1| SSU ribosomal protein S4P [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 207 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T+ PG HG+ S+ S +G QLR Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCKLDTK---PGQHGRTSGSRTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA+R +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H +L+NG VNI S + K GDV+ +++K+K+ A + E+ L + ++SV+ Sbjct: 117 QLVSHCAILLNGSPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF ++P +D+ + +L+VE YSR Sbjct: 177 AKLEGTFKQVPDR-EDISGEI--NESLIVELYSR 207 >gi|307543849|ref|YP_003896328.1| 30S ribosomal protein S4 [Halomonas elongata DSM 2581] gi|307215873|emb|CBV41143.1| 30S ribosomal protein S4 [Halomonas elongata DSM 2581] Length = 206 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +P + PG+HGQRR+ + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRRQ-RISEYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGATGELLLQLLESRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNGR+VN+ SY+ K GDV+ V++K+K A + A + A R ++ + M Sbjct: 119 SHKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQNALGIAANRGDVAWVETDAKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P D+ + NL+VE YS+ Sbjct: 179 EGTFKALPER-GDLSADI--NENLIVELYSK 206 >gi|72161417|ref|YP_289074.1| 30S ribosomal protein S4 [Thermobifida fusca YX] gi|90101732|sp|Q47R66|RS4_THEFY RecName: Full=30S ribosomal protein S4 gi|71915149|gb|AAZ55051.1| SSU ribosomal protein S4P [Thermobifida fusca YX] Length = 203 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 120/201 (59%), Gaps = 6/201 (2%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ RR G L + R Y PG HG+R + S + ++ KQK++ YY D+SE Sbjct: 7 KVRLSRRAGVPLTRKAVKYFEKRPYPPGEHGRRVRRSTSDYAVRQAEKQKLRWYY-DLSE 65 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ +++ A + G T +I+ LE RL T++ RA F +I+AARQF+NH H+ V+G+ Sbjct: 66 KQLARVYENAKKRPGRTGEEMIAELELRLATVLLRAGFAASIYAARQFINHGHITVDGKK 125 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQ--LAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SY+ K G ++ V++KS++L +EA++ A+ + Y++V+H ++ V P Sbjct: 126 VDIPSYQVKPGQIVSVREKSRKLVPFIEAAEGVHADEKIASYLAVSHKDLTIAVVDRPKR 185 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + VP P Q LVVE+Y+R Sbjct: 186 -EQVPVPFDEQ--LVVEYYAR 203 >gi|239787587|emb|CAX84055.1| 30S ribosomal protein S4 [uncultured bacterium] Length = 208 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 + +RE++K + GE + K + R+YGPGLHGQRR+ K S +G+ LR KQK+K+ Sbjct: 11 LCRREAAKLFLK---GEKCYS-DKCAMERRNYGPGLHGQRRR-KVSDYGVHLREKQKIKR 65 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y + EK+F + F++A R G T NL+ LE RLD +VYR F + ARQ V+H+ Sbjct: 66 TYC-LLEKQFHNYFQKAARMPGVTGENLLILLERRLDNVVYRLGFSSSRSEARQVVSHKQ 124 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG+ +NI SY K GD I V ++ K + A A R P ++ V+ M TF Sbjct: 125 ILVNGKPINICSYLVKPGDKIAVNEQCKAHLRIKAALDHAMRRSFPSWLEVDPVAMSGTF 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P P NL+VE YS+ Sbjct: 185 LSFPDR---ADLPADYNENLIVELYSK 208 >gi|258513667|ref|YP_003189889.1| 30S ribosomal protein S4 [Desulfotomaculum acetoxidans DSM 771] gi|257777372|gb|ACV61266.1| ribosomal protein S4 [Desulfotomaculum acetoxidans DSM 771] Length = 208 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K ++ RSY PG HGQ R+ K S +G QLR Sbjct: 1 MARYTGPQCKLCRREGLKLYLKGDRCYSDKCAIDRRSYPPGQHGQSRR-KVSEYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR+ F ADR +G T NL+ LE R+D +++R + ARQ Sbjct: 60 KQKVRRIYG-VLEKQFRTYFDRADRQQGITGENLLRLLERRMDNVIFRMGLGASRVEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H VNGR V+I S+ K GDVI +++ SK + E + AE+ P ++ + D Sbjct: 119 LVTHGHFTVNGRKVDIPSFLVKVGDVIGIREGSKDSPRIKELMERAAEKTRPAWLEYDSD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ PV Q +L+VE YSR Sbjct: 179 AAQGRIVALPRR-DEIDAPV--QEHLIVELYSR 208 >gi|227538693|ref|ZP_03968742.1| ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33300] gi|227241612|gb|EEI91627.1| ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33300] Length = 202 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G P + ++Y PG HG +R+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFREPIFG-PDKALEKKNYPPGQHGPSKRRGKQSEYAIQLLEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F +A +G T N + LE+RLD VYR PT AARQ V+H+ Sbjct: 60 YTYG-VLERQFSNLFVKAAAKQGITGENFLKLLEARLDNTVYRLGIAPTRAAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY + GDVI V+++S+ L +V + + + + ++ N + TF Sbjct: 119 HITVNGGVVNIPSYSLRPGDVIAVRERSQSLEAVTTSVEGRKINKFAWLEWNANEFKGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+P + + NL+VE YS+ Sbjct: 179 LSYPERT-DIPENI--KENLIVELYSK 202 >gi|300770226|ref|ZP_07080105.1| 30S ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33861] gi|300762702|gb|EFK59519.1| 30S ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33861] Length = 202 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G P + ++Y PG HG +R+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFREPIFG-PDKALEKKNYPPGQHGPSKRRGKQSEYAIQLLEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F +A +G T N + LE+RLD VYR PT AARQ V+H+ Sbjct: 60 YTYG-VLERQFSNLFVKAAAKQGITGENFLKLLEARLDNTVYRLGIAPTRAAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY + GDVI V+++S+ L +V + + + + ++ N + TF Sbjct: 119 HITVNGGVVNIPSYSLRPGDVIAVRERSQALEAVTTSVEGRKINKFAWLEWNANEFKGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+P + + NL+VE YS+ Sbjct: 179 LSYPERT-DIPENI--KENLIVELYSK 202 >gi|116873025|ref|YP_849806.1| 30S ribosomal protein S4 [Listeria welshimeri serovar 6b str. SLCC5334] gi|289434877|ref|YP_003464749.1| ribosomal protein S4 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|123466377|sp|A0AJ45|RS4_LISW6 RecName: Full=30S ribosomal protein S4 gi|116741903|emb|CAK21027.1| 30S ribosomal protein S4 [Listeria welshimeri serovar 6b str. SLCC5334] gi|289171121|emb|CBH27663.1| ribosomal protein S4 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633056|gb|EFR99970.1| ribosomal protein S4 [Listeria seeligeri FSL N1-067] gi|313638010|gb|EFS03298.1| ribosomal protein S4 [Listeria seeligeri FSL S4-171] Length = 200 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ ++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLDVSS-FVPEYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + + +VEFYSR Sbjct: 178 RIP---ERSELAAEINEAFIVEFYSR 200 >gi|111220573|ref|YP_711367.1| 30S ribosomal protein S4 [Frankia alni ACN14a] gi|123339013|sp|Q0RRP4|RS4_FRAAA RecName: Full=30S ribosomal protein S4 gi|111148105|emb|CAJ59773.1| 30S ribosomal subunit protein S4 [Frankia alni ACN14a] Length = 209 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/187 (41%), Positives = 106/187 (56%), Gaps = 9/187 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG R ++K S + LQ R KQK + YG I EK+FR + EA+R G Sbjct: 29 PKCPIEIRPYPPGEHG-RGRTKDSEYLLQKREKQKCARIYG-ILEKQFRGYYDEANRRAG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYR F P+ AARQ V H HV VNGR V+I SYR E D++E Sbjct: 87 KTGDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSYRISENDIVE 146 Query: 143 VKQKSKQLASVLEASQLA--ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNL 199 + K+++L + A + A R VP ++ M +P+ + D +Q L Sbjct: 147 IAPKARELTPFIVARETAGQGRAVPAWLESIPSQMRILVHSLPARQVIDTQ----VQEQL 202 Query: 200 VVEFYSR 206 +VE YS+ Sbjct: 203 IVELYSK 209 >gi|145300911|ref|YP_001143752.1| ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida A449] gi|152060929|sp|A4SSY2|RS4_AERS4 RecName: Full=30S ribosomal protein S4 gi|142853683|gb|ABO92004.1| ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida A449] Length = 206 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K++ S +G+QLR Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHGAR-KARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +++A R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++K+K+ A + + ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIPSFQVSPEDVVCVREKAKKQARIKASLEVAGQREKPTWVEVDT 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|307823465|ref|ZP_07653694.1| ribosomal protein S4 [Methylobacter tundripaludum SV96] gi|307735450|gb|EFO06298.1| ribosomal protein S4 [Methylobacter tundripaludum SV96] Length = 206 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 10/202 (4%) Query: 10 KIDRRIGENLW--GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 K+ RR G +L+ R KS N PG HG +R ++ S + +QLRAKQ++++ YG I Sbjct: 10 KLSRREGTDLFLKSRGKSLENKCKLDQRPGQHGTKR-ARSSDYAIQLRAKQRLRRIYG-I 67 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+FR+ +K AD +G T NL++ LESRLD +VYR F T ARQ V+H+ + VN Sbjct: 68 LEKQFRNYYKTADLKKGATGQNLLNLLESRLDNVVYRMGFASTRAEARQLVSHKSIQVNN 127 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +N+ SY+ GDV+ V++K+K+ +++A + E+ P ++ VN +M TF +P Sbjct: 128 VLINVPSYQVSPGDVLTVREKAKKQQRIVDALVVTEQYGFPSWVEVNSKSMSGTFSSLPD 187 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 V + LVVE YS+ Sbjct: 188 R---VDLGSDINEQLVVELYSK 206 >gi|53803440|ref|YP_114764.1| 30S ribosomal protein S4 [Methylococcus capsulatus str. Bath] gi|61215442|sp|Q605D6|RS4_METCA RecName: Full=30S ribosomal protein S4 gi|53757201|gb|AAU91492.1| ribosomal protein S4 [Methylococcus capsulatus str. Bath] Length = 206 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ G+ PG HGQ+R + S + QLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSRGKSLESKCKLDQPPGQHGQKR-PRLSDYAAQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E++FR+ + EA R +G T NL++ LESRLD +VYR F T ARQ V Sbjct: 60 KLRRIYG-IMERQFRNYYAEASRRKGSTGENLLTLLESRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + +NGR++NI SY+ + GDV+E++ K+K V +A Q+ E+ P ++ V+ +M Sbjct: 119 SHKAINLNGRTLNIPSYQVQSGDVVEIRDKAKSQGRVKDALQVTEQYGFPSWVDVDVKSM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P + + LVVE YS+ Sbjct: 179 KGIFKSAPERSE---LGSDINEQLVVELYSK 206 >gi|296137040|ref|YP_003644282.1| ribosomal protein S4 [Thiomonas intermedia K12] gi|294341217|emb|CAZ89618.1| 30S ribosomal subunit protein S4 [Thiomonas sp. 3As] gi|295797162|gb|ADG31952.1| ribosomal protein S4 [Thiomonas intermedia K12] Length = 207 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ +K K+ RR G +L+ + K + T+ PG HG+ ++ S +G QLR Sbjct: 1 MARFIGAKGKLTRREGADLFLKSARRGIDSKVKLETK---PGQHGRTSGARTSDYGKQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR ++EA R G+T NL+ LESRLD +VYR + T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYYEEAQRRSGNTGTNLLMLLESRLDNVVYRMGYGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+HR + VNG+ +NI S K GDV+ V++KS+ A + E+ +LAE + P ++ V+ Sbjct: 117 QLVSHRSITVNGKVLNIPSALVKTGDVVAVREKSRNQARIQESVKLAESNGFPAWVQVDG 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F + P +D + + +L++E YSR Sbjct: 177 AKMEGVFKKAPD--RD-EFGNDINESLIIELYSR 207 >gi|282878783|ref|ZP_06287551.1| ribosomal protein S4 [Prevotella buccalis ATCC 35310] gi|281299174|gb|EFA91575.1| ribosomal protein S4 [Prevotella buccalis ATCC 35310] Length = 201 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S FG L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEFGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A +S G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKSDGITGEVLLQNLECRLDNVVFRMGIAPTRAAARQMVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 ++V+G VNI SY K G ++ V++K+K L V+EAS LA + +Y I + ++ Sbjct: 119 IVVDGSVVNIPSYAVKPGQIVGVREKAKSL-EVIEAS-LAGFNHSKYPWIEWDENSKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ +P D+P + Q L+VE YS+ Sbjct: 177 FLHLPER-ADIPENIKEQ--LIVELYSK 201 >gi|148244353|ref|YP_001219047.1| 30S ribosomal protein S4 [Candidatus Vesicomyosocius okutanii HA] gi|172047241|sp|A5CXI8|RS4_VESOH RecName: Full=30S ribosomal protein S4 gi|146326180|dbj|BAF61323.1| 30S ribosomal protein S4 [Candidatus Vesicomyosocius okutanii HA] Length = 208 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 111/175 (63%), Gaps = 6/175 (3%) Query: 34 PGLHG-QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG+HG R+ K + +GLQLR KQK+++ YG I EK+FR +K+A + +G T NL+S L Sbjct: 38 PGMHGASARRQKGTEYGLQLREKQKIRRIYG-ILEKQFRLYYKKASQKKGSTGENLLSLL 96 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +VYR F T ARQ V+H+ ++VNG VNI SY+ D I +++K+K+ + Sbjct: 97 ECRLDNVVYRMGFASTRAEARQLVSHKSIMVNGLVVNIPSYQVSVNDKISIREKAKKQSR 156 Query: 153 VLEASQLAERDV-PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A +L+ + P+++ V++ + F +PS +D P +Q +L+VE YS+ Sbjct: 157 IQLALELSGQSTQPQWLDVDNKTLKGVFKNVPS--RD-ELPSDIQEHLIVELYSK 208 >gi|46907827|ref|YP_014216.1| 30S ribosomal protein S4 [Listeria monocytogenes str. 4b F2365] gi|61215605|sp|Q71Z71|RS4_LISMF RecName: Full=30S ribosomal protein S4 gi|46881096|gb|AAT04393.1| ribosomal protein S4 [Listeria monocytogenes serotype 4b str. F2365] Length = 200 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSS-FVPEYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSERAAE---INEAFIVEFYSR 200 >gi|254362773|ref|ZP_04978855.1| ribosomal protein S4 [Mannheimia haemolytica PHL213] gi|261492716|ref|ZP_05989264.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495669|ref|ZP_05992115.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094402|gb|EDN75251.1| ribosomal protein S4 [Mannheimia haemolytica PHL213] gi|261308776|gb|EEY10033.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311569|gb|EEY12724.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 208 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 125/215 (58%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV--------NTRSYGPGLHGQRRKSKPSYFGLQL 52 M++ K K+ RR G +L+ KS V N PG HG R K + S +G QL Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIESKCRNRLDVAPGQHGAR-KPRLSDYGSQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T A Sbjct: 58 REKQKVRRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 RQ V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 117 RQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P D+ + +L+VE YS+ Sbjct: 177 ATKMEGVFKRRPER-SDLSADI--NEHLIVELYSK 208 >gi|77918341|ref|YP_356156.1| 30S ribosomal protein S4 [Pelobacter carbinolicus DSM 2380] gi|90101701|sp|Q3A6M1|RS4_PELCD RecName: Full=30S ribosomal protein S4 gi|77544424|gb|ABA87986.1| SSU ribosomal protein S4P [Pelobacter carbinolicus DSM 2380] Length = 209 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HGQ R +K S +G QLR KQ+MK+ YG + EK+FR+ F +AD +G Sbjct: 30 KCALERRNYAPGQHGQGR-TKVSDYGTQLREKQRMKRTYG-LLEKQFRAYFDKADSMKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD+ VYR F + R V H LVNGR VNI SY + DVIE+ Sbjct: 88 TGENLLVLLERRLDSAVYRLGFASSRTEGRALVRQGHFLVNGRKVNIPSYVMRPNDVIEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+++ + +A + R +P ++ ++ + TF +P +++ P Q L+VE Sbjct: 148 REKSRKITRINDALDGVMRRGLPSWVELDREAFKGTFKTLPVR-EEMTTPAF-QEQLIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|16800706|ref|NP_470974.1| 30S ribosomal protein S4 [Listeria innocua Clip11262] gi|226224197|ref|YP_002758304.1| ribosomal protein S4 [Listeria monocytogenes Clip81459] gi|26399441|sp|Q92BB2|RS4_LISIN RecName: Full=30S ribosomal protein S4 gi|259495285|sp|C1KVP3|RS4_LISMC RecName: Full=30S ribosomal protein S4 gi|16414125|emb|CAC96869.1| ribosomal protein S4 [Listeria innocua Clip11262] gi|225876659|emb|CAS05368.1| ribosomal protein S4 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|313618704|gb|EFR90630.1| ribosomal protein S4 [Listeria innocua FSL S4-378] Length = 200 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSS-FVPEYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLP---ERSELAAEINEAFIVEFYSR 200 >gi|261880856|ref|ZP_06007283.1| 30S ribosomal protein S4 [Prevotella bergensis DSM 17361] gi|270332363|gb|EFA43149.1| 30S ribosomal protein S4 [Prevotella bergensis DSM 17361] Length = 201 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G+QL KQK K Sbjct: 1 MARYIGPKSRISRRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKQSEYGIQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A +S G T L+ LE RLD +VYR PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFVKAAKSGGITGEVLLQLLECRLDNVVYRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G ++ V+++SK L ++ A ++ + F+ Sbjct: 119 ITVDGQVVNIPSYSVKAGQIVGVRERSKSLEAIDAALAGFNHSKYPWLEWDEHTKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +D+P + Q L+VE YS+ Sbjct: 179 HTPER-EDIPENIKEQ--LIVELYSK 201 >gi|210611153|ref|ZP_03288767.1| hypothetical protein CLONEX_00957 [Clostridium nexile DSM 1787] gi|210152140|gb|EEA83147.1| hypothetical protein CLONEX_00957 [Clostridium nexile DSM 1787] Length = 197 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 105/172 (61%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ F +A + G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYFAKASKMNGMTGENLMILLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +V+R F T ARQ V+H+HVLVNG+ VNI SY K GDVIE+K+K S++ +LE Sbjct: 92 VVFRMGFARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDVIEIKEKHKGSQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ VN + + T +P+ + DVP + L+VE YS+ Sbjct: 152 VT--GGRLVPEWLDVNAEGLQGTVKELPTREVIDVP----VDEMLIVELYSK 197 >gi|330719419|ref|ZP_08314019.1| 30S ribosomal protein S4 [Leuconostoc fallax KCTC 3537] Length = 203 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K ++ RR+G +L G K ++ R+Y PG HG R+SK S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRLSRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRSKLSEYGVQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A R G N + LE RLD++V+R F + ARQ VNH Sbjct: 60 TYG-LTERQFHALFNKAGSIRKGTHGTNFMILLEQRLDSLVFRLGFATSRAQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G I V+ KSK + + A + A P+++S + D + + Sbjct: 119 HILVDGKRVDIPSYHVVPGQEISVRDKSKNIVPIQSAIE-AVVSRPQFVSFDADKLTGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VE+Y+R Sbjct: 178 VRLPEREE---LDADINEALIVEYYNR 201 >gi|297571412|ref|YP_003697186.1| ribosomal protein S4 [Arcanobacterium haemolyticum DSM 20595] gi|296931759|gb|ADH92567.1| ribosomal protein S4 [Arcanobacterium haemolyticum DSM 20595] Length = 206 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 112/198 (56%), Gaps = 9/198 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R +G L + + + R Y PG HG R + K S + ++L+ KQ+++ YG I E + R Sbjct: 14 RALGLALTPKAERYMQRRPYRPGEHG-RGRVKESDYSVRLKEKQRLRAQYG-IREAQLRK 71 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++ EA R+ G + NL+ LE RLD +V RA F TI ARQ V HRH+LV+G+ V+ S Sbjct: 72 VWDEARRTEGMSGENLVELLEMRLDALVLRAGFARTIAQARQVVVHRHILVDGKLVDRPS 131 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATFVRIPSSLKD 188 +R K G V++VK +S+ A L A+Q DV PEY+ V + + VR P K Sbjct: 132 FRVKPGQVVQVKPRSQASAQFLAAAQGQHADVLPAAPEYMKVELEKLRFELVRRP---KR 188 Query: 189 VPYPVIMQPNLVVEFYSR 206 PV +VVEFYSR Sbjct: 189 AEVPVTCDVQMVVEFYSR 206 >gi|227431364|ref|ZP_03913416.1| ribosomal protein S4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352874|gb|EEJ43048.1| ribosomal protein S4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 203 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F +A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFKALFNKAGKIRKGTHGTNFMISLEQRLDSVVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+LV+G+ V+I SY + G V+ V++KSK + + A + + R P+++S++ + + + Sbjct: 119 HILVDGKRVDIPSYSVQPGQVVSVREKSKNILPIQTAIESVVAR--PQFVSLDTEKLEGS 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYS 205 VR+P + + L+VE+Y+ Sbjct: 177 LVRLPEREE---LDADINEALIVEYYN 200 >gi|163847949|ref|YP_001635993.1| 30S ribosomal protein S4 [Chloroflexus aurantiacus J-10-fl] gi|222525829|ref|YP_002570300.1| 30S ribosomal protein S4 [Chloroflexus sp. Y-400-fl] gi|189045369|sp|A9WH92|RS4_CHLAA RecName: Full=30S ribosomal protein S4 gi|254764579|sp|B9LJF8|RS4_CHLSY RecName: Full=30S ribosomal protein S4 gi|163669238|gb|ABY35604.1| ribosomal protein S4 [Chloroflexus aurantiacus J-10-fl] gi|222449708|gb|ACM53974.1| ribosomal protein S4 [Chloroflexus sp. Y-400-fl] Length = 206 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K+ RR+G + + +N RS PG HG R+ + S +G+QLR KQK K YG + E+ Sbjct: 10 KVSRRLGIGITEKGLRILNKRSDPPGQHGAAARRRQLSDYGMQLREKQKAKFLYG-VLER 68 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +FR +F++A R G T L+S LE RLD +VYR F T ARQ VNH H++V+GR Sbjct: 69 QFRRLFEQASRRSGVTGEYLLSLLERRLDNVVYRLGFATTRAQARQLVNHGHIVVDGRKT 128 Query: 129 NIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 NI SY K G VI V+ +S+ +++++ L + PE++ +N + T V +P Sbjct: 129 NIPSYTVKVGQVIAVRPQSRSRTYFKNLVDSGVLNKHRAPEWLRLNAAELSGTVVALPRR 188 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 +D + Q L+VEFYSR Sbjct: 189 -EDAEAGINEQ--LIVEFYSR 206 >gi|325972637|ref|YP_004248828.1| ribosomal protein S4 [Spirochaeta sp. Buddy] gi|324027875|gb|ADY14634.1| ribosomal protein S4 [Spirochaeta sp. Buddy] Length = 213 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 110/186 (59%), Gaps = 5/186 (2%) Query: 24 KSPVN-TRSYG-PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 K P+N T+S G PG + R KP+ +GLQLR KQK+K+ Y + EK+F+ F EA R Sbjct: 30 KCPMNDTKSTGLPGKDPRARSKKPTDYGLQLREKQKLKRTYCML-EKQFKLTFDEAARIP 88 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T NLI LE RLD +V+R F + A QFVNH H+ VNG+ V+I SYR + GDV+ Sbjct: 89 GKTGENLIMLLEQRLDNVVFRLHFAASRNQAAQFVNHGHIFVNGKRVSIPSYRLRPGDVV 148 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V K +++ + E + + V +++S++ D M TFV +P +V + LV Sbjct: 149 SVGVKGQKMLMIKENLKEYTKSGVCQWLSLDVDAMKGTFVAVPRR-SEVTELEKINEQLV 207 Query: 201 VEFYSR 206 VE YSR Sbjct: 208 VELYSR 213 >gi|329946640|ref|ZP_08294052.1| ribosomal protein S4 [Actinomyces sp. oral taxon 170 str. F0386] gi|328526451|gb|EGF53464.1| ribosomal protein S4 [Actinomyces sp. oral taxon 170 str. F0386] Length = 207 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R YGPG HG+ R+ S + ++L+ KQ+++ YG I E + + +F+EA R +G T +L+ Sbjct: 31 RPYGPGEHGRARRRTESDYAVRLKEKQRLRAQYG-IREAQLQRVFEEARRGQGLTGESLV 89 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD +V R+ TI ARQ V HRH+LV+G+ V+ SYR K G I+V+ +S+ Sbjct: 90 ELLEMRLDALVLRSGIARTIAQARQDVVHRHILVDGKVVDRPSYRVKPGQTIQVRPRSQV 149 Query: 150 LASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + A+ A RD VP+Y++V+ + + AT VR P K PV +VVE+YS Sbjct: 150 MVPFQVAAAGAHRDVLPPVPDYLNVDLEKLSATLVRRP---KRDEVPVTCDVQMVVEYYS 206 Query: 206 R 206 R Sbjct: 207 R 207 >gi|116618921|ref|YP_819292.1| SSU ribosomal protein S4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270879|sp|Q03V53|RS4_LEUMM RecName: Full=30S ribosomal protein S4 gi|116097768|gb|ABJ62919.1| SSU ribosomal protein S4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 203 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F +A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFKALFNKAGKIRKGTHGTNFMISLEQRLDSVVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+LV+G+ V+I SY + G V+ V++KSK + + A + + R P+++S++ + + + Sbjct: 119 HILVDGKRVDIPSYSVQPGQVVSVREKSKNILPIQAAIESVVAR--PQFVSLDTEKLEGS 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYS 205 VR+P + + L+VE+Y+ Sbjct: 177 LVRLPEREE---LDADINEALIVEYYN 200 >gi|308235918|ref|ZP_07666655.1| 30S ribosomal protein S4 [Gardnerella vaginalis ATCC 14018] gi|311114983|ref|YP_003986204.1| 30S ribosomal protein S4 [Gardnerella vaginalis ATCC 14019] gi|310946477|gb|ADP39181.1| 30S ribosomal protein S4 [Gardnerella vaginalis ATCC 14019] Length = 208 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 119/208 (57%), Gaps = 8/208 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R + ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ Y Sbjct: 5 QRSRRQVRLSRALGIALTPKAQRIFEKRPYAPGEHGRTRRRTESDYAVRLREKQRLRAQY 64 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G +SEK+ R+ +++ + G T +++ LE+RLD +V RA F T ARQFV HRH+L Sbjct: 65 G-LSEKQLRAAYEKGTHTAGQTGDAMLTDLETRLDALVLRAGFARTTAQARQFVVHRHIL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVAT 178 V+G V+ SYR K G I+V+ KS+ + A++ RD VP Y+ VN ++ AT Sbjct: 124 VDGNLVDRPSYRVKPGQTIQVRAKSQTMVPFQMAAEGVHRDVLPAVPGYLDVNLASLKAT 183 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + +P V +Q VVE+Y+R Sbjct: 184 LTRKP-EVDQIPVEVNIQ--YVVEYYAR 208 >gi|319944771|ref|ZP_08019035.1| 30S ribosomal protein S4 [Lautropia mirabilis ATCC 51599] gi|319742020|gb|EFV94443.1| 30S ribosomal protein S4 [Lautropia mirabilis ATCC 51599] Length = 207 Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +T+ PG HG+ + S +GLQLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLDSKAKADTK---PGQHGRTSGQRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA R RG+T L+ LESRLD +VYR T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYFAEASRKRGNTGELLLQLLESRLDNVVYRMGLASTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR +LVNG +N+ S K DVI VK+ +K+ A +++A LAE+ + P ++SV+ Sbjct: 117 QLVSHRAILVNGAILNVPSAAIKPNDVISVKESAKKQARIVDALNLAEQHNFPSWVSVDK 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M F P + + +L+VE YSR Sbjct: 177 NKMEGVFKAYPDRSE---IAADVNESLIVELYSR 207 >gi|325856044|ref|ZP_08171933.1| ribosomal protein S4 [Prevotella denticola CRIS 18C-A] gi|327313216|ref|YP_004328653.1| 30S ribosomal protein S4 [Prevotella denticola F0289] gi|325483716|gb|EGC86680.1| ribosomal protein S4 [Prevotella denticola CRIS 18C-A] gi|326946115|gb|AEA22000.1| ribosomal protein S4 [Prevotella denticola F0289] Length = 201 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + +++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKKNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFDKAAKADGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 ++VNG V I SY+ K GDV+ V++K+K L V+EA+ LA + +Y + + + Sbjct: 119 IVVNGNVVGIASYQVKAGDVVGVREKAKSL-EVIEAA-LAGFNHSKYPWLEWDENAKCGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHRPDR-ADIPENIKEQ--LIVELYSK 201 >gi|47093459|ref|ZP_00231223.1| ribosomal protein S4 [Listeria monocytogenes str. 4b H7858] gi|47096809|ref|ZP_00234391.1| ribosomal protein S4 [Listeria monocytogenes str. 1/2a F6854] gi|217964250|ref|YP_002349928.1| ribosomal protein S4 [Listeria monocytogenes HCC23] gi|224499177|ref|ZP_03667526.1| 30S ribosomal protein S4 [Listeria monocytogenes Finland 1988] gi|224501464|ref|ZP_03669771.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL R2-561] gi|254824345|ref|ZP_05229346.1| ribosomal protein S4 [Listeria monocytogenes FSL J1-194] gi|254828169|ref|ZP_05232856.1| ribosomal protein S4 [Listeria monocytogenes FSL N3-165] gi|254831997|ref|ZP_05236652.1| 30S ribosomal protein S4 [Listeria monocytogenes 10403S] gi|254898237|ref|ZP_05258161.1| 30S ribosomal protein S4 [Listeria monocytogenes J0161] gi|254912270|ref|ZP_05262282.1| ribosomal protein S4 [Listeria monocytogenes J2818] gi|254931536|ref|ZP_05264895.1| ribosomal protein S4 [Listeria monocytogenes HPB2262] gi|254936597|ref|ZP_05268294.1| ribosomal protein S4 [Listeria monocytogenes F6900] gi|254993888|ref|ZP_05276078.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL J2-064] gi|255026363|ref|ZP_05298349.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL J2-003] gi|255522552|ref|ZP_05389789.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL J1-175] gi|284801988|ref|YP_003413853.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5578] gi|284995130|ref|YP_003416898.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5923] gi|290893191|ref|ZP_06556178.1| ribosomal protein S4 [Listeria monocytogenes FSL J2-071] gi|300765979|ref|ZP_07075950.1| ribosomal protein S4 [Listeria monocytogenes FSL N1-017] gi|315282534|ref|ZP_07870925.1| ribosomal protein S4 [Listeria marthii FSL S4-120] gi|254764594|sp|B8DHE5|RS4_LISMH RecName: Full=30S ribosomal protein S4 gi|47014842|gb|EAL05793.1| ribosomal protein S4 [Listeria monocytogenes str. 1/2a F6854] gi|47018187|gb|EAL08956.1| ribosomal protein S4 [Listeria monocytogenes str. 4b H7858] gi|217333520|gb|ACK39314.1| ribosomal protein S4 [Listeria monocytogenes HCC23] gi|258600556|gb|EEW13881.1| ribosomal protein S4 [Listeria monocytogenes FSL N3-165] gi|258609194|gb|EEW21802.1| ribosomal protein S4 [Listeria monocytogenes F6900] gi|284057550|gb|ADB68491.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5578] gi|284060597|gb|ADB71536.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5923] gi|290557173|gb|EFD90700.1| ribosomal protein S4 [Listeria monocytogenes FSL J2-071] gi|293583091|gb|EFF95123.1| ribosomal protein S4 [Listeria monocytogenes HPB2262] gi|293590249|gb|EFF98583.1| ribosomal protein S4 [Listeria monocytogenes J2818] gi|293593579|gb|EFG01340.1| ribosomal protein S4 [Listeria monocytogenes FSL J1-194] gi|300513297|gb|EFK40373.1| ribosomal protein S4 [Listeria monocytogenes FSL N1-017] gi|307571182|emb|CAR84361.1| ribosomal protein S4 [Listeria monocytogenes L99] gi|313608550|gb|EFR84435.1| ribosomal protein S4 [Listeria monocytogenes FSL F2-208] gi|313613822|gb|EFR87575.1| ribosomal protein S4 [Listeria marthii FSL S4-120] gi|313623582|gb|EFR93757.1| ribosomal protein S4 [Listeria innocua FSL J1-023] gi|328464963|gb|EGF36242.1| 30S ribosomal protein S4 [Listeria monocytogenes 1816] gi|328474830|gb|EGF45634.1| 30S ribosomal protein S4 [Listeria monocytogenes 220] Length = 200 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSS-FVPEYVTFDAEKLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLP---ERSELAAEINEAFIVEFYSR 200 >gi|325203287|gb|ADY98740.1| ribosomal protein S4 [Neisseria meningitidis M01-240355] Length = 206 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K++ S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK-KTRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|296111082|ref|YP_003621463.1| 30S ribosomal protein S4 [Leuconostoc kimchii IMSNU 11154] gi|295832613|gb|ADG40494.1| 30S ribosomal protein S4 [Leuconostoc kimchii IMSNU 11154] Length = 203 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 13/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKVSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F S+F +A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFHSLFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV---PEYISVNHDNMV 176 H+LV+G+ V+I S+ G VI V+ KSK + + Q+A V P+++S + + + Sbjct: 119 HILVDGKRVDIPSFSVTPGQVISVRDKSKTIVPI----QVAVESVVAHPQFVSFDSEKLE 174 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + + L+VE+Y+R Sbjct: 175 GSLVRLPEREE---LDADINEALIVEYYNR 201 >gi|288929314|ref|ZP_06423159.1| ribosomal protein S4 [Prevotella sp. oral taxon 317 str. F0108] gi|288329416|gb|EFC68002.1| ribosomal protein S4 [Prevotella sp. oral taxon 317 str. F0108] Length = 201 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKTSEYGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKASGITGEVLLQNLESRLDNVVFRLGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-- 178 ++V+G+ VNI SY K G V+ V++K+K L V+EA+ LA + +Y + D+ + Sbjct: 119 IVVDGKVVNIPSYSVKAGQVVGVREKAKSL-EVIEAA-LAGFNHSKYPWIEWDDASKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|229820502|ref|YP_002882028.1| ribosomal protein S4 [Beutenbergia cavernae DSM 12333] gi|259495269|sp|C5C5S5|RS4_BEUC1 RecName: Full=30S ribosomal protein S4 gi|229566415|gb|ACQ80266.1| ribosomal protein S4 [Beutenbergia cavernae DSM 12333] Length = 208 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 8/209 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 +KR ++ ++ R +G L + R Y PG HG+ R+ S + ++L+ KQ+++ Sbjct: 4 TKRARNQVRLSRALGLPLTPKAAKYFEKRPYPPGEHGRARRRTESDYAVRLKEKQRLRAQ 63 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I E + R F EA R G T L+ LE RLD +V R+ F TI ARQ V HRHV Sbjct: 64 YG-IREAQLRRAFDEARREAGLTGEALVELLEMRLDALVLRSGFARTIAQARQAVVHRHV 122 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVA 177 LV+G+ V+ S+R K G VI+VK +S+ A+ A RD VPEY+ V+ + + + Sbjct: 123 LVDGKIVDRPSFRVKPGQVIQVKPRSQARTPFQVAAAGAHRDVLAQVPEYLDVSLEKLRS 182 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P K PV L+VE+Y+R Sbjct: 183 ELVRRP---KRAEVPVTADVQLIVEWYAR 208 >gi|224534184|ref|ZP_03674763.1| ribosomal protein S4 [Borrelia spielmanii A14S] gi|224514545|gb|EEF84860.1| ribosomal protein S4 [Borrelia spielmanii A14S] Length = 208 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D +VYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D I++K+K K + S +E + + R++P +I VN DN+ Sbjct: 120 GIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADNL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|117618638|ref|YP_854866.1| ribosomal protein S4 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|152060928|sp|A0KF44|RS4_AERHH RecName: Full=30S ribosomal protein S4 gi|117560045|gb|ABK36993.1| ribosomal protein S4 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 206 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R K++ S +G+QLR Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDTV---PGQHGAR-KARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +++A R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++K+K+ A + + ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P D+ + Q L+VE YS+ Sbjct: 176 AKMEGAFKRLPER-SDLSADINEQ--LIVELYSK 206 >gi|241759655|ref|ZP_04757756.1| ribosomal protein S4 [Neisseria flavescens SK114] gi|241320027|gb|EER56408.1| ribosomal protein S4 [Neisseria flavescens SK114] Length = 206 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKMDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIIVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LSGDINEQLVVEFYSK 206 >gi|296131863|ref|YP_003639110.1| ribosomal protein S4 [Thermincola sp. JR] gi|296030441|gb|ADG81209.1| ribosomal protein S4 [Thermincola potens JR] Length = 208 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/185 (44%), Positives = 113/185 (61%), Gaps = 8/185 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ R Y PG+HGQ RK K S +G+QLR KQK ++ YG + EK+FR+ F +ADR G Sbjct: 30 KCAIDRRGYAPGMHGQGRK-KISEYGIQLREKQKARRIYG-VLEKQFRNYFAKADRQPGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR F + ARQ V H H VN + VNI SY K GDVI++ Sbjct: 88 TGENLLRLLERRLDNVVYRLGFASSRTEARQLVRHGHFTVNDKKVNIPSYSLKVGDVIKI 147 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 K+KS +L + E Q A + P ++ ++ D + V IPS + DVP ++ +L+V Sbjct: 148 KEKSLELPRIKELLEQAAHKTPPAWLELDVDQHLGKVVAIPSREEIDVP----IEEHLIV 203 Query: 202 EFYSR 206 E YSR Sbjct: 204 ELYSR 208 >gi|298531061|ref|ZP_07018462.1| ribosomal protein S4 [Desulfonatronospira thiodismutans ASO3-1] gi|298509084|gb|EFI32989.1| ribosomal protein S4 [Desulfonatronospira thiodismutans ASO3-1] Length = 208 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK ++ RR G L + K R+Y PG HG+ RK K S + LQLR Sbjct: 1 MARYTDSKCRLCRREGTKLLLKGDRCYTDKCAYERRAYPPGEHGRARK-KSSDYALQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +F+ F+ AD +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRMYG-LLEGQFKRYFEIADSRKGATGTNLLVMLERRLDNVVYRMGFANSRSQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG VN+ S KEGDVI V +KS+++ + +A LA R P+++ +N Sbjct: 119 LVRHGHFHINGTRVNVPSILLKEGDVIGVIEKSRKMPVIQDARDVLARRGSPDWLEINDQ 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ +D+ +P+ Q L+VE YS+ Sbjct: 179 EFKGTVKTLPAR-EDITFPINEQ--LIVELYSK 208 >gi|330505183|ref|YP_004382052.1| 30S ribosomal protein S4 [Pseudomonas mendocina NK-01] gi|328919469|gb|AEB60300.1| 30S ribosomal protein S4 [Pseudomonas mendocina NK-01] Length = 206 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +K+A +G T NL+ LE RLD +VYR + T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGYGATRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VN+ SY+ K GDV+ V++KSK + +A +L A+R E++ V+ + Sbjct: 118 VSHKAISVNGQTVNVPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDAEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|308069706|ref|YP_003871311.1| 30S ribosomal protein S4 [Paenibacillus polymyxa E681] gi|305858985|gb|ADM70773.1| 30S ribosomal protein S4 [Paenibacillus polymyxa E681] Length = 199 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGANQRRKISNYGMQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A G N + LESRLD +V+R F + ARQ V H H Sbjct: 59 MYG-LGEKQFRTLFNKAQHMHGIAGENFMFLLESRLDNLVFRLGFANSRAGARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 V VNG+ V+I SY+ GDVI ++++S+ L+S+ EA L R+ + Y+ N + F Sbjct: 118 VTVNGKKVDIASYQVSPGDVIGLRERSRSLSSIKEA--LENRNHLVAYLEYNDAALEGKF 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P + + +VEFY+R Sbjct: 176 IRLP---ERGELSQDIDEKQIVEFYNR 199 >gi|293570759|ref|ZP_06681809.1| ribosomal protein S4 [Enterococcus faecium E980] gi|291609231|gb|EFF38503.1| ribosomal protein S4 [Enterococcus faecium E980] Length = 203 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSGTGKE-LARRPYAPGQHGPNSRGKQSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRNLFVKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G VI V++KS+ +V EA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYHVEVGQVISVREKSQNNVTVKEAVE-ATVGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D YP I + LVVE+Y++ Sbjct: 178 TRLPE--RDELYPEIDEA-LVVEYYNQ 201 >gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] gi|227517321|ref|ZP_03947370.1| 30S ribosomal protein S4 [Enterococcus faecalis TX0104] gi|227554493|ref|ZP_03984540.1| 30S ribosomal protein S4 [Enterococcus faecalis HH22] gi|229547500|ref|ZP_04436225.1| 30S ribosomal protein S4 [Enterococcus faecalis TX1322] gi|229548076|ref|ZP_04436801.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 29200] gi|256618170|ref|ZP_05475016.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 4200] gi|256854748|ref|ZP_05560112.1| ribosomal protein S4 [Enterococcus faecalis T8] gi|256958352|ref|ZP_05562523.1| 30S ribosomal protein S4 [Enterococcus faecalis DS5] gi|256960421|ref|ZP_05564592.1| 30S ribosomal protein S4 [Enterococcus faecalis Merz96] gi|256962912|ref|ZP_05567083.1| 30S ribosomal protein S4 [Enterococcus faecalis HIP11704] gi|257078338|ref|ZP_05572699.1| 30S ribosomal protein S4 [Enterococcus faecalis JH1] gi|257080522|ref|ZP_05574883.1| 30S ribosomal protein S4 [Enterococcus faecalis E1Sol] gi|257083258|ref|ZP_05577619.1| 30S ribosomal protein S4 [Enterococcus faecalis Fly1] gi|257088187|ref|ZP_05582548.1| 30S ribosomal protein S4 [Enterococcus faecalis D6] gi|257091313|ref|ZP_05585674.1| 30S ribosomal protein S4 [Enterococcus faecalis CH188] gi|257417921|ref|ZP_05594915.1| 30S ribosomal protein S4 [Enterococcus faecalis T11] gi|257420473|ref|ZP_05597463.1| 30S ribosomal protein S4 [Enterococcus faecalis X98] gi|293383922|ref|ZP_06629824.1| ribosomal protein S4 [Enterococcus faecalis R712] gi|293388316|ref|ZP_06632830.1| ribosomal protein S4 [Enterococcus faecalis S613] gi|294780202|ref|ZP_06745574.1| ribosomal protein S4 [Enterococcus faecalis PC1.1] gi|300861437|ref|ZP_07107521.1| ribosomal protein S4 [Enterococcus faecalis TUSoD Ef11] gi|307270423|ref|ZP_07551724.1| ribosomal protein S4 [Enterococcus faecalis TX4248] gi|307273936|ref|ZP_07555148.1| ribosomal protein S4 [Enterococcus faecalis TX0855] gi|307276703|ref|ZP_07557820.1| ribosomal protein S4 [Enterococcus faecalis TX2134] gi|307278207|ref|ZP_07559289.1| ribosomal protein S4 [Enterococcus faecalis TX0860] gi|307286409|ref|ZP_07566515.1| ribosomal protein S4 [Enterococcus faecalis TX0109] gi|307292091|ref|ZP_07571958.1| ribosomal protein S4 [Enterococcus faecalis TX0411] gi|312901910|ref|ZP_07761173.1| ribosomal protein S4 [Enterococcus faecalis TX0470] gi|312905372|ref|ZP_07764487.1| ribosomal protein S4 [Enterococcus faecalis TX0635] gi|312906737|ref|ZP_07765737.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 512] gi|312910725|ref|ZP_07769564.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 516] gi|312953171|ref|ZP_07772018.1| ribosomal protein S4 [Enterococcus faecalis TX0102] gi|41017833|sp|Q82ZI6|RS4_ENTFA RecName: Full=30S ribosomal protein S4 gi|29344995|gb|AAO82752.1| ribosomal protein S4 [Enterococcus faecalis V583] gi|227075191|gb|EEI13154.1| 30S ribosomal protein S4 [Enterococcus faecalis TX0104] gi|227176403|gb|EEI57375.1| 30S ribosomal protein S4 [Enterococcus faecalis HH22] gi|229306762|gb|EEN72758.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 29200] gi|229307342|gb|EEN73329.1| 30S ribosomal protein S4 [Enterococcus faecalis TX1322] gi|256597697|gb|EEU16873.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 4200] gi|256710308|gb|EEU25352.1| ribosomal protein S4 [Enterococcus faecalis T8] gi|256948848|gb|EEU65480.1| 30S ribosomal protein S4 [Enterococcus faecalis DS5] gi|256950917|gb|EEU67549.1| 30S ribosomal protein S4 [Enterococcus faecalis Merz96] gi|256953408|gb|EEU70040.1| 30S ribosomal protein S4 [Enterococcus faecalis HIP11704] gi|256986368|gb|EEU73670.1| 30S ribosomal protein S4 [Enterococcus faecalis JH1] gi|256988552|gb|EEU75854.1| 30S ribosomal protein S4 [Enterococcus faecalis E1Sol] gi|256991288|gb|EEU78590.1| 30S ribosomal protein S4 [Enterococcus faecalis Fly1] gi|256996217|gb|EEU83519.1| 30S ribosomal protein S4 [Enterococcus faecalis D6] gi|257000125|gb|EEU86645.1| 30S ribosomal protein S4 [Enterococcus faecalis CH188] gi|257159749|gb|EEU89709.1| 30S ribosomal protein S4 [Enterococcus faecalis T11] gi|257162297|gb|EEU92257.1| 30S ribosomal protein S4 [Enterococcus faecalis X98] gi|291078749|gb|EFE16113.1| ribosomal protein S4 [Enterococcus faecalis R712] gi|291082326|gb|EFE19289.1| ribosomal protein S4 [Enterococcus faecalis S613] gi|294452745|gb|EFG21175.1| ribosomal protein S4 [Enterococcus faecalis PC1.1] gi|295114399|emb|CBL33036.1| SSU ribosomal protein S4P [Enterococcus sp. 7L76] gi|300848898|gb|EFK76651.1| ribosomal protein S4 [Enterococcus faecalis TUSoD Ef11] gi|306496873|gb|EFM66423.1| ribosomal protein S4 [Enterococcus faecalis TX0411] gi|306502422|gb|EFM71695.1| ribosomal protein S4 [Enterococcus faecalis TX0109] gi|306505196|gb|EFM74384.1| ribosomal protein S4 [Enterococcus faecalis TX0860] gi|306506602|gb|EFM75755.1| ribosomal protein S4 [Enterococcus faecalis TX2134] gi|306509415|gb|EFM78473.1| ribosomal protein S4 [Enterococcus faecalis TX0855] gi|306513201|gb|EFM81832.1| ribosomal protein S4 [Enterococcus faecalis TX4248] gi|310627385|gb|EFQ10668.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 512] gi|310628914|gb|EFQ12197.1| ribosomal protein S4 [Enterococcus faecalis TX0102] gi|310631396|gb|EFQ14679.1| ribosomal protein S4 [Enterococcus faecalis TX0635] gi|311288988|gb|EFQ67544.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 516] gi|311290977|gb|EFQ69533.1| ribosomal protein S4 [Enterococcus faecalis TX0470] gi|315027687|gb|EFT39619.1| ribosomal protein S4 [Enterococcus faecalis TX2137] gi|315028229|gb|EFT40161.1| ribosomal protein S4 [Enterococcus faecalis TX4000] gi|315031243|gb|EFT43175.1| ribosomal protein S4 [Enterococcus faecalis TX0017] gi|315036538|gb|EFT48470.1| ribosomal protein S4 [Enterococcus faecalis TX0027] gi|315143294|gb|EFT87310.1| ribosomal protein S4 [Enterococcus faecalis TX2141] gi|315148889|gb|EFT92905.1| ribosomal protein S4 [Enterococcus faecalis TX4244] gi|315149065|gb|EFT93081.1| ribosomal protein S4 [Enterococcus faecalis TX0012] gi|315152920|gb|EFT96936.1| ribosomal protein S4 [Enterococcus faecalis TX0031] gi|315154776|gb|EFT98792.1| ribosomal protein S4 [Enterococcus faecalis TX0043] gi|315157493|gb|EFU01510.1| ribosomal protein S4 [Enterococcus faecalis TX0312] gi|315162550|gb|EFU06567.1| ribosomal protein S4 [Enterococcus faecalis TX0645] gi|315164504|gb|EFU08521.1| ribosomal protein S4 [Enterococcus faecalis TX1302] gi|315167181|gb|EFU11198.1| ribosomal protein S4 [Enterococcus faecalis TX1341] gi|315171025|gb|EFU15042.1| ribosomal protein S4 [Enterococcus faecalis TX1342] gi|315173453|gb|EFU17470.1| ribosomal protein S4 [Enterococcus faecalis TX1346] gi|315573361|gb|EFU85552.1| ribosomal protein S4 [Enterococcus faecalis TX0309B] gi|315578558|gb|EFU90749.1| ribosomal protein S4 [Enterococcus faecalis TX0630] gi|315581207|gb|EFU93398.1| ribosomal protein S4 [Enterococcus faecalis TX0309A] gi|323479004|gb|ADX78443.1| ribosomal protein S4 [Enterococcus faecalis 62] gi|327536193|gb|AEA95027.1| 30S ribosomal protein S4 [Enterococcus faecalis OG1RF] gi|329571122|gb|EGG52828.1| ribosomal protein S4 [Enterococcus faecalis TX1467] Length = 203 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KS+ ++++ EA + A P ++S + + + +F Sbjct: 119 HITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVE-ATVGRPAFVSFDTEKLEGSF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D YP I + LVVE+Y++ Sbjct: 178 TRLPE--RDELYPEIDEA-LVVEYYNQ 201 >gi|216263496|ref|ZP_03435491.1| ribosomal protein S4 [Borrelia afzelii ACA-1] gi|215980340|gb|EEC21161.1| ribosomal protein S4 [Borrelia afzelii ACA-1] Length = 208 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ SK K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQISKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D IVYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNIVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 V++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 120 GIVILNGRRVTIPSIILRANDQIKIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|220928235|ref|YP_002505144.1| ribosomal protein S4 [Clostridium cellulolyticum H10] gi|254764580|sp|B8I807|RS4_CLOCE RecName: Full=30S ribosomal protein S4 gi|219998563|gb|ACL75164.1| ribosomal protein S4 [Clostridium cellulolyticum H10] Length = 208 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K V R Y PG HGQ RK K S +G+QLR Sbjct: 1 MARYTDASCRLCRREGEKLFLKGERCYTDKCSVARRPYAPGQHGQGRK-KMSEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 K K++++YG + E +F F+ A R +G T NL+ LE+RLD +VYR + +RQ Sbjct: 60 KAKVRRFYG-VLEGQFSKYFEVASRRKGITGENLLQILETRLDNVVYRLGLGTSRPESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H VNG+ VNI SY K GDVI V SK V ++A + +P+++ + + Sbjct: 119 LVTHGHFTVNGKRVNIPSYLIKVGDVIAVADNSKNSPKVKSIREIAGGKVIPKWLEFDEE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V V +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVVALPAR-EDIDLPI--KEHLIVELYSK 208 >gi|271964887|ref|YP_003339083.1| 30S ribosomal protein S4 [Streptosporangium roseum DSM 43021] gi|270508062|gb|ACZ86340.1| 30S ribosomal protein S4 [Streptosporangium roseum DSM 43021] Length = 204 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDIS 66 K ++ RR G L + R Y PG HG++ + + +GL+L KQK++ YY D+S Sbjct: 7 KVRLSRRAGVPLTRKAVRYFEERPYPPGEHGRKTNRRQTGDYGLRLMEKQKLRWYY-DVS 65 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ R + A RS G + L+ LESRL ++V RA P+I+AARQ+V H H+ V+GR Sbjct: 66 ERQMRRYWDMALRSTGRSGAELVVLLESRLASLVLRAGLAPSIYAARQYVTHGHITVDGR 125 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ--LAERDVPEYISVNHDNMVATFVRIPS 184 V+I SY K G VI V+Q+S+ + + A++ A+ + Y+SV+H ++ T V P+ Sbjct: 126 KVDIPSYLVKPGQVIAVRQRSRAMQPFVAAAEGTYADDRIAPYLSVDHADLRFTVVGRPA 185 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + V V + LVVEFYSR Sbjct: 186 REQIV---VPVDEQLVVEFYSR 204 >gi|150389493|ref|YP_001319542.1| 30S ribosomal protein S4 [Alkaliphilus metalliredigens QYMF] gi|172052476|sp|A6TNW5|RS4C_ALKMQ RecName: Full=30S ribosomal protein S4 C gi|149949355|gb|ABR47883.1| RNA-binding S4 domain protein [Alkaliphilus metalliredigens QYMF] Length = 198 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ +N G R K S +G+QL KQK++ Sbjct: 1 MAKMMEPRFKLSRRLGVNVYGHPKA-MNRAGNGS----YRGSKKLSNYGIQLLEKQKLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F+ +A +S G T LI LE RLD +VYR F +I ARQ VNH H Sbjct: 56 YYG-VMEKQFKLYVDKAMQSTGVTGEVLIQSLECRLDNMVYRMGFASSIREARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SY K GD + +++KS+Q+ + E YI N + + V Sbjct: 115 LLVNGQKVDIPSYGLKLGDEVSLREKSQQVEKYISNFTHFEGQTLSYIDKNIEMLTTKLV 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IPS +++P V +LVVE+YSR Sbjct: 175 AIPSR-EEIPIEV--NDHLVVEYYSR 197 >gi|255970731|ref|ZP_05421317.1| 30S ribosomal protein S4 [Enterococcus faecalis T1] gi|255974305|ref|ZP_05424891.1| 30S ribosomal protein S4 [Enterococcus faecalis T2] gi|256761099|ref|ZP_05501679.1| 30S ribosomal protein S4 [Enterococcus faecalis T3] gi|255961749|gb|EET94225.1| 30S ribosomal protein S4 [Enterococcus faecalis T1] gi|255967177|gb|EET97799.1| 30S ribosomal protein S4 [Enterococcus faecalis T2] gi|256682350|gb|EEU22045.1| 30S ribosomal protein S4 [Enterococcus faecalis T3] Length = 208 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 6 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRH 64 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 65 MYG-MNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KS+ ++++ EA + A P ++S + + + +F Sbjct: 124 HITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVE-ATVGRPAFVSFDTEKLEGSF 182 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D YP I + LVVE+Y++ Sbjct: 183 TRLPE--RDELYPEIDEA-LVVEYYNQ 206 >gi|28212155|ref|NP_783099.1| 30S ribosomal protein S4 [Clostridium tetani E88] gi|41017837|sp|Q890Q9|RS4_CLOTE RecName: Full=30S ribosomal protein S4 gi|28204599|gb|AAO37036.1| SSU ribosomal protein S4P [Clostridium tetani E88] Length = 206 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 18/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTEANCRLCRREGLKLYLKGDRCYTDKCAFSRRGYAPGQHGQSRK-KISNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR+ +K AD++RG T NL+ LE RLD +VYR + + +RQ Sbjct: 60 KQKAKRIYG-VLEKQFRTYYKRADKARGITGENLLVLLEMRLDNVVYRLGYGDSRKESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H LVNG+ VNI S+ DVI V +KS+ + + +E R +P ++ N Sbjct: 119 LVTHGHFLVNGKKVNIPSFNVSVNDVITVSEKSRATEKFKTFIENP----RTLPNWLEGN 174 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N V PS +D+ PV L+VE YS+ Sbjct: 175 LENFEGKVVSQPSR-EDIDVPV--NETLIVELYSK 206 >gi|322384358|ref|ZP_08058056.1| 30S ribosomal protein S4-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150860|gb|EFX44297.1| 30S ribosomal protein S4-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 199 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G+QL KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGPTQRRKVSGYGMQLMEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F +++ +A + G + N + LESRLD +V+R F + ARQ V+H H Sbjct: 59 MYG-LNEKQFHNLYNKAIKLPGISGENFMILLESRLDNLVFRLGFANSRAGARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 V VNG+ V+I SY+ GDVI ++++S+ L S+ EA L R+ +P Y+ N + F Sbjct: 118 VTVNGKKVDIASYQVSVGDVIGLRERSRNLKSIKEA--LENRNFLPAYLEFNEQALEGKF 175 Query: 180 VRIP--SSLKDVPYPVIMQPNLVVEFYSR 206 +R+P S L + +VEFYSR Sbjct: 176 IRLPERSELAQE-----IDEKQIVEFYSR 199 >gi|319639573|ref|ZP_07994320.1| 30S ribosomal protein S4 [Neisseria mucosa C102] gi|317399144|gb|EFV79818.1| 30S ribosomal protein S4 [Neisseria mucosa C102] Length = 206 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKMDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LSGDINEQLVVEFYSK 206 >gi|311693294|gb|ADP96167.1| 30S ribosomal protein S4 [marine bacterium HP15] Length = 167 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 105/172 (61%), Gaps = 6/172 (3%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +HG RR + S +G+QLR KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE R Sbjct: 1 MHGARR-GRLSEYGVQLREKQKVRRIYG-VLEKQFRNYYKEAARGKGATGENLLQLLEGR 58 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD +VYR F T ARQ V+H+ +LVN ++VNI SY+ + GDV+ V++K+K V Sbjct: 59 LDNVVYRMGFGSTRAEARQLVSHKAILVNDKTVNIPSYQVRPGDVVSVREKAKNQLRVRG 118 Query: 156 ASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A L+ P ++ V+ + M + +P + P + NL+VE YS+ Sbjct: 119 ALDLSASRAPVSWVEVDANKMSGVYKSVPERTE---LPADINENLIVELYSK 167 >gi|323344662|ref|ZP_08084886.1| 30S ribosomal protein S4 [Prevotella oralis ATCC 33269] gi|323093932|gb|EFZ36509.1| 30S ribosomal protein S4 [Prevotella oralis ATCC 33269] Length = 201 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MAKYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRKKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F+ A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFERAAKADGITGEVLLQNLESRLDNVVFRLGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G ++ V++K+K L + A +I + ++ F+ Sbjct: 119 IVVDGKVVNIPSYSVKPGQIVGVREKAKSLEVIETALAGFNHSKYPWIEWDDNSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + Q L+VE YS+ Sbjct: 179 HKPER-ADIPENIKEQ--LIVELYSK 201 >gi|148272986|ref|YP_001222547.1| 30S ribosomal protein S4 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|172047226|sp|A5CRZ7|RS4_CLAM3 RecName: Full=30S ribosomal protein S4 gi|147830916|emb|CAN01860.1| 30S ribosomal protein S4 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 209 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 8/206 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R SK ++ R +G L + + R Y PG HG+ ++ + S + ++LR KQ+++ YG Sbjct: 6 RTRSKTRLSRALGIPLTPKAAKYLEKRPYAPGEHGRSKRKQDSDYAVRLREKQRLRAQYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I E + + F+EA R++G T NL+ LE RLD +V R+ T ARQ V HRH++V Sbjct: 66 -IREAQLKIAFQEARRTQGLTGENLVEILEQRLDALVVRSGLARTTAQARQLVVHRHIMV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATF 179 +G+ V+ S+R K G +I VK +S+ A+ DV P Y+ V D + A Sbjct: 125 DGKIVDRPSFRVKAGQMIHVKPRSEGTEPFQVAAAGGHADVLPKLPSYLEVELDKLQARL 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 VR+P K PV + LVVE+Y+ Sbjct: 185 VRLP---KRAEVPVTCEVQLVVEYYA 207 >gi|73662353|ref|YP_301134.1| 30S ribosomal protein S4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581622|sp|Q49YF2|RS4_STAS1 RecName: Full=30S ribosomal protein S4 gi|72494868|dbj|BAE18189.1| 30S ribosomal protein S4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 200 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S + LQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYALQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A G N + L +RLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFEIAGNQHGVHGENFMQLLAARLDAVVYSLGLARTRRQARQIVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K G I V++KS +L + E+ ++ VP+Y+ + DN+ ++ Sbjct: 119 IEVDGKRVDIPSYTLKPGQEISVREKSLKLDIIAESVEI-NNFVPDYLEFDADNLKGKYI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RVPERSE---LPAEINEQLIVEYYSR 200 >gi|260909776|ref|ZP_05916470.1| 30S ribosomal protein S4 [Prevotella sp. oral taxon 472 str. F0295] gi|260636201|gb|EEX54197.1| 30S ribosomal protein S4 [Prevotella sp. oral taxon 472 str. F0295] Length = 201 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 125/208 (60%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKTSEYGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKASGITGEVLLQNLESRLDNVVFRLGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-- 178 ++V+G+ VNI SY K G ++ V++K+K L V+EA+ LA + +Y + D+ + Sbjct: 119 IVVDGKVVNIPSYSVKAGQIVGVREKAKSL-EVIEAA-LAGFNHSKYPWIEWDDASKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|224532017|ref|ZP_03672649.1| ribosomal protein S4 [Borrelia valaisiana VS116] gi|224511482|gb|EEF81888.1| ribosomal protein S4 [Borrelia valaisiana VS116] Length = 208 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D IVYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSLLERRIDNIVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 V++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 120 GIVILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|28867878|ref|NP_790497.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato str. DC3000] gi|66047752|ref|YP_237593.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae B728a] gi|71734874|ref|YP_276682.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|213969238|ref|ZP_03397376.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato T1] gi|289623825|ref|ZP_06456779.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648918|ref|ZP_06480261.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str. 2250] gi|289675512|ref|ZP_06496402.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae FF5] gi|298489072|ref|ZP_07007094.1| SSU ribosomal protein S4p (S9e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381745|ref|ZP_07230163.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato Max13] gi|302061055|ref|ZP_07252596.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato K40] gi|302130804|ref|ZP_07256794.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302189301|ref|ZP_07265974.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae 642] gi|37999395|sp|Q889U7|RS4_PSESM RecName: Full=30S ribosomal protein S4 gi|81307873|sp|Q4ZMR7|RS4_PSEU2 RecName: Full=30S ribosomal protein S4 gi|90101706|sp|Q48D60|RS4_PSE14 RecName: Full=30S ribosomal protein S4 gi|28851114|gb|AAO54192.1| ribosomal protein S4 [Pseudomonas syringae pv. tomato str. DC3000] gi|63258459|gb|AAY39555.1| Ribosomal protein S4, bacterial and organelle form [Pseudomonas syringae pv. syringae B728a] gi|71555427|gb|AAZ34638.1| ribosomal protein S4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|213925916|gb|EEB59473.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato T1] gi|298156384|gb|EFH97482.1| SSU ribosomal protein S4p (S9e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322298|gb|EFW78392.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str. B076] gi|320331956|gb|EFW87892.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str. race 4] gi|330869407|gb|EGH04116.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879399|gb|EGH13548.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str. race 4] gi|330879418|gb|EGH13567.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330891908|gb|EGH24569.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. mori str. 301020] gi|330899712|gb|EGH31131.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940914|gb|EGH43865.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. pisi str. 1704B] gi|330953173|gb|EGH53433.1| 30S ribosomal protein S4 [Pseudomonas syringae Cit 7] gi|330962501|gb|EGH62761.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966887|gb|EGH67147.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. actinidiae str. M302091] gi|330969797|gb|EGH69863.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330988258|gb|EGH86361.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331018184|gb|EGH98240.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 206 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ V VNG++VN+ SY+ + GDV+ +++K+K +++A L A+R E++ V+ + Sbjct: 118 VSHKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|255526606|ref|ZP_05393513.1| ribosomal protein S4 [Clostridium carboxidivorans P7] gi|296187295|ref|ZP_06855691.1| ribosomal protein S4 [Clostridium carboxidivorans P7] gi|255509714|gb|EET86047.1| ribosomal protein S4 [Clostridium carboxidivorans P7] gi|296048166|gb|EFG87604.1| ribosomal protein S4 [Clostridium carboxidivorans P7] Length = 206 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 10/185 (5%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V+ R Y PG HGQ RK K S +GLQLR KQK ++ YG + E +FR+ +++A+R RG Sbjct: 30 KCAVSRRGYAPGQHGQSRK-KVSNYGLQLREKQKARRIYG-VLEGQFRTYYEKAERKRGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 + NL+ LE RLD + Y+ + + ARQ V H H L+NG+ V+I SY+ GDVI V Sbjct: 88 SGENLLKLLEMRLDNVAYKFGYGNSRAEARQLVTHGHFLINGKKVDIASYQVSAGDVITV 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 +KS+ S AE + +P ++ N +N VR PS +D+ PV L+V Sbjct: 148 SEKSR---STERFKTFAENPKALPAWLEGNPENFEGKIVREPSR-EDIDVPV--NETLIV 201 Query: 202 EFYSR 206 E YS+ Sbjct: 202 ELYSK 206 >gi|310642769|ref|YP_003947527.1| 30S ribosomal protein s4 [Paenibacillus polymyxa SC2] gi|309247719|gb|ADO57286.1| 30S ribosomal protein S4 [Paenibacillus polymyxa SC2] Length = 199 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGANQRRKISNYGMQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A G N + LESRLD +V+R F + ARQ V H H Sbjct: 59 MYG-LGEKQFRTLFNKAQHMHGIAGENFMFLLESRLDNLVFRLGFANSRAGARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 V VNG+ V+I SY+ GDVI ++++S+ L+S+ EA L R+ + Y+ N + + Sbjct: 118 VTVNGKKVDIASYQVSPGDVIGLRERSRSLSSIKEA--LENRNHLVAYLEYNDAALEGKY 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P + + +VEFY+R Sbjct: 176 IRLP---ERAELSQDIDEKQIVEFYNR 199 >gi|170723882|ref|YP_001751570.1| 30S ribosomal protein S4 [Pseudomonas putida W619] gi|226699108|sp|B1JAI8|RS4_PSEPW RecName: Full=30S ribosomal protein S4 gi|169761885|gb|ACA75201.1| ribosomal protein S4 [Pseudomonas putida W619] Length = 206 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 118 VSHKAISVNGKTVNIPSYQVRPGDVVAVREKSSNQLRIVQALELCAQRGRVEWVDVDSAK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKNVPAR-GDLSADI--NENLIVELYSK 206 >gi|295396094|ref|ZP_06806277.1| 30S ribosomal protein S4 [Brevibacterium mcbrellneri ATCC 49030] gi|294971035|gb|EFG46927.1| 30S ribosomal protein S4 [Brevibacterium mcbrellneri ATCC 49030] Length = 275 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 112/201 (55%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + + R Y PG HG+ R+ S + ++L+ KQ+++ YG I E + Sbjct: 79 RLSRALGLPLTPKAEKYFERRPYPPGEHGRARRRNDSDYSIRLKEKQRLRAQYG-IREAQ 137 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 +KEA + G T L+ LE RLD +V RA F TI ARQFV HRH+ V+G+ V+ Sbjct: 138 MLKTYKEARKESGLTGEALVELLEMRLDALVLRAGFARTISQARQFVVHRHICVDGQRVD 197 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 SYR KEG +I V ++S+ + A+ A RD VP Y++VN + + AT +R P Sbjct: 198 RPSYRVKEGQMIHVHERSQPMDPFQVAAAGAHRDVLPTVPGYLNVNLEALQATLLRRP-- 255 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K PV LVVE YSR Sbjct: 256 -KREEIPVTCDVQLVVEHYSR 275 >gi|153871948|ref|ZP_02000981.1| 30S ribosomal protein S4 [Beggiatoa sp. PS] gi|152071584|gb|EDN69017.1| 30S ribosomal protein S4 [Beggiatoa sp. PS] Length = 206 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 124/217 (57%), Gaps = 22/217 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYG----------PGLHGQRRKSKPSYFGL 50 M++ K K+ RR G +L+ + +R+ G PG HG +R + S + L Sbjct: 1 MARYLGPKCKLSRREGVDLF------LKSRARGLESKCKLEKLPGQHGDKR-PRLSDYAL 53 Query: 51 QLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIF 110 QLR KQK+++ YG + E++F + + +A R +G T NL+ LE RLD +VYR F T Sbjct: 54 QLREKQKLRRLYG-VLERQFHNYYLKASRKKGSTGENLLMLLEGRLDNVVYRMGFAVTRA 112 Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYIS 169 ARQ V+H+ +LVN +SVNI SY+ K GDVI ++ KS+ QL SQ E ++PE++ Sbjct: 113 EARQLVSHKAILVNEKSVNIPSYQVKAGDVIAIRGKSRTQLRIKAALSQAVEFELPEWVE 172 Query: 170 VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+ + M F P ++ ++P M LVVE YS+ Sbjct: 173 VDVEKMSGVFKAQP-TIGELPGD--MNVQLVVELYSK 206 >gi|315303380|ref|ZP_07873992.1| ribosomal protein S4 [Listeria ivanovii FSL F6-596] gi|313628248|gb|EFR96769.1| ribosomal protein S4 [Listeria ivanovii FSL F6-596] Length = 200 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ ++ VP+Y++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLDVSS-FVPDYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + + +VEFYSR Sbjct: 178 RIPERSE---LAAEINEAFIVEFYSR 200 >gi|229592879|ref|YP_002874998.1| 30S ribosomal protein S4 [Pseudomonas fluorescens SBW25] gi|312963346|ref|ZP_07777829.1| 30S ribosomal protein S4 [Pseudomonas fluorescens WH6] gi|330812052|ref|YP_004356514.1| 30S ribosomal protein S4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|259495288|sp|C3K2V2|RS4_PSEFS RecName: Full=30S ribosomal protein S4 gi|229364745|emb|CAY52725.1| 30S ribosomal protein S4 [Pseudomonas fluorescens SBW25] gi|311282426|gb|EFQ61024.1| 30S ribosomal protein S4 [Pseudomonas fluorescens WH6] gi|327380160|gb|AEA71510.1| 30S ribosomal protein S4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 206 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VN+ SY+ + GDV+ V++K+K +++A L A+R E++ V+ + Sbjct: 118 VSHKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALDLCAQRGRVEWVEVDTEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|317970558|ref|ZP_07971948.1| 30S ribosomal protein S4 [Synechococcus sp. CB0205] Length = 202 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 123/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKSAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SY+CK GDV+ ++++ SK+LA LE LA ++P ++ ++ + VA Sbjct: 117 VTVNGRVVDIASYQCKAGDVVAIRERKQSKKLAEANLEFPGLA--NIPPHLELDKNKQVA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + S + + + LVVE+YSR Sbjct: 175 KVI---SKCEREWVALEINELLVVEYYSR 200 >gi|170781158|ref|YP_001709490.1| 30S ribosomal protein S4 [Clavibacter michiganensis subsp. sepedonicus] gi|189045370|sp|B0REK0|RS4_CLAMS RecName: Full=30S ribosomal protein S4 gi|169155726|emb|CAQ00847.1| 30S ribosomal protein S4 [Clavibacter michiganensis subsp. sepedonicus] Length = 209 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 113/206 (54%), Gaps = 8/206 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R SK ++ R +G L + + R Y PG HG+ ++ + S + ++LR KQ+++ YG Sbjct: 6 RTRSKTRLSRALGIPLTPKAAKYLEKRPYAPGEHGRSKRKQDSDYAVRLREKQRLRAQYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I E + + F+EA R++G T NL+ LE RLD +V R+ T ARQ V HRH++V Sbjct: 66 -IREAQLKIAFQEARRTQGLTGENLVEILEQRLDALVVRSGLARTTAQARQLVVHRHIMV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATF 179 +G+ V+ S+R K G +I VK +S+ A+ DV P Y+ V D + A Sbjct: 125 DGKIVDRPSFRVKAGQMIHVKPRSEGTEPFQVAAAGGHADVLPKLPPYLEVELDKLQARL 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 VR+P K PV + LVVE+Y+ Sbjct: 185 VRLP---KRAEVPVTCEVQLVVEYYA 207 >gi|167752411|ref|ZP_02424538.1| hypothetical protein ALIPUT_00655 [Alistipes putredinis DSM 17216] gi|167660652|gb|EDS04782.1| hypothetical protein ALIPUT_00655 [Alistipes putredinis DSM 17216] Length = 202 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M + K KI R+ GE ++G + + R++ PG HG R++ K S +G QL KQK K Sbjct: 1 MGRYIGPKSKIARKFGEAIFGADRV-LEKRNFPPGQHGLARKRKKVSEYGQQLSEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F +++A R G T NL+ LE RLD +VYR PT AARQ V+H Sbjct: 60 ATYG-LLEKQFSRTYEQAARMGGITGENLLKLLECRLDNVVYRLGIAPTRAAARQLVSHC 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD++ V++KSK L ++ + + ++ + M F Sbjct: 119 HICVNGNVVNIPSYSLKVGDIVSVREKSKSLEVIVGSLAGGSKSRYAWLEWDGAAMAGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P +++P + Q L+VE YS+ Sbjct: 179 LQRPER-EEIPENIKEQ--LIVELYSK 202 >gi|241895757|ref|ZP_04783053.1| ribosomal protein S4 [Weissella paramesenteroides ATCC 33313] gi|241870800|gb|EER74551.1| ribosomal protein S4 [Weissella paramesenteroides ATCC 33313] Length = 203 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+++ RR+G +L G K + R+Y PG HG R+SKPS +G+QL KQK++ Sbjct: 1 MSRYTGPKYRLSRRLGVSLSGTGKE-LARRNYAPGDHGAGRRSKPSDYGIQLAEKQKVRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A + R G N +S LE RLD IVYR T ARQ VNH Sbjct: 60 TYG-MTERQFHNLFLKAGKIRKGTHGDNFMSLLERRLDNIVYRLGLASTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G I V++KS++ + A + +P ++ + D + T Sbjct: 119 HILVDGKRVDIPSYEVSVGQEISVREKSQKNVYIQAAVEAQAGTLP-FVEFDKDTLKGTL 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 VR P + D Y L+VE+Y+R Sbjct: 178 VREPERAELDHEY----NEALIVEYYNR 201 >gi|184200995|ref|YP_001855202.1| 30S ribosomal protein S4 [Kocuria rhizophila DC2201] gi|183581225|dbj|BAG29696.1| 30S ribosomal protein S4 [Kocuria rhizophila DC2201] Length = 212 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 8/209 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S R + + R +G L + + R Y PG HG+ R+ + S + ++L KQ+++ Sbjct: 6 SSRARRQVRKSRALGIALTPKAEKYFERRPYAPGEHGRARRKQDSDYKVRLTEKQRLRAQ 65 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 Y +I EK+ + EA R G T NLI+ LE+RLD +V RA FV T+ AARQ V HRH+ Sbjct: 66 Y-NIREKQMHRAYVEAKRVEGQTGENLIALLETRLDALVLRAGFVRTMAAARQAVVHRHI 124 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVA 177 +V+G+ V+ SYR + G +I V +S+++ A+ A +DV P Y+ V D + A Sbjct: 125 MVDGQRVDRPSYRVRPGQMIHVHPRSEKMVPFQIAATGANQDVLPDTPPYLDVTIDRLQA 184 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R P + PV + LVVE+Y+R Sbjct: 185 TLSRKPERSE---VPVTCEEQLVVEYYAR 210 >gi|325267152|ref|ZP_08133820.1| 30S ribosomal protein S4 [Kingella denitrificans ATCC 33394] gi|324981390|gb|EGC17034.1| 30S ribosomal protein S4 [Kingella denitrificans ATCC 33394] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 126/212 (59%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S S PG HG + K + S +GLQLR K Sbjct: 1 MARYIGPKCKLARREGTDLYLKSARRSLESKCKMDS-APGQHGAK-KPRLSDYGLQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ Sbjct: 59 QKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 V+H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P +++V+ Sbjct: 118 VSHKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEAMGLATQIGLPSWVAVDASK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF +P + Y I + LVVEFYS+ Sbjct: 178 LEGTFKNVPDRAE--LYSDINE-QLVVEFYSK 206 >gi|148381393|ref|YP_001255934.1| ribosomal protein S4 [Clostridium botulinum A str. ATCC 3502] gi|153933367|ref|YP_001385768.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 19397] gi|153935510|ref|YP_001389175.1| 30S ribosomal protein S4 [Clostridium botulinum A str. Hall] gi|153940320|ref|YP_001392806.1| 30S ribosomal protein S4 [Clostridium botulinum F str. Langeland] gi|168178860|ref|ZP_02613524.1| ribosomal protein S4 [Clostridium botulinum NCTC 2916] gi|168181892|ref|ZP_02616556.1| 30S ribosomal protein S4 [Clostridium botulinum Bf] gi|170755638|ref|YP_001783093.1| 30S ribosomal protein S4 [Clostridium botulinum B1 str. Okra] gi|226950905|ref|YP_002805996.1| ribosomal protein S4 [Clostridium botulinum A2 str. Kyoto] gi|237796914|ref|YP_002864466.1| 30S ribosomal protein S4 [Clostridium botulinum Ba4 str. 657] gi|171769230|sp|A7FZ45|RS4A_CLOB1 RecName: Full=30S ribosomal protein S4 A gi|171769265|sp|A7GJ46|RS4A_CLOBL RecName: Full=30S ribosomal protein S4 A gi|172047868|sp|A5I7H8|RS4A_CLOBH RecName: Full=30S ribosomal protein S4 A gi|148290877|emb|CAL85013.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 3502] gi|152929411|gb|ABS34911.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 19397] gi|152931424|gb|ABS36923.1| 30S ribosomal protein S4 [Clostridium botulinum A str. Hall] gi|152936216|gb|ABS41714.1| 30S ribosomal protein S4 [Clostridium botulinum F str. Langeland] gi|169120850|gb|ACA44686.1| 30S ribosomal protein S4 [Clostridium botulinum B1 str. Okra] gi|182669924|gb|EDT81900.1| ribosomal protein S4 [Clostridium botulinum NCTC 2916] gi|182674921|gb|EDT86882.1| 30S ribosomal protein S4 [Clostridium botulinum Bf] gi|226841883|gb|ACO84549.1| ribosomal protein S4 [Clostridium botulinum A2 str. Kyoto] gi|229261759|gb|ACQ52792.1| 30S ribosomal protein S4 [Clostridium botulinum Ba4 str. 657] gi|295320786|gb|ADG01164.1| 30S ribosomal protein S4 [Clostridium botulinum F str. 230613] gi|322807778|emb|CBZ05353.1| SSU ribosomal protein S4p (S9e) [Clostridium botulinum H04402 065] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 117/214 (54%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGATCRLCRREGLKLFLKGDRCYTDKCAFARRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR ++EADR RG T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-ILERQFRGYYEEADRRRGITGENLLRLLEMRLDNVVYRLGYGNSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H LVNG+ V+I SY+ DVI V KSK + + AE + +P ++S N Sbjct: 119 LVTHGHFLVNGKKVDIPSYQVSANDVITVCDKSK---ATEKFKTFAENPKTLPAWLSGNV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R P+ +D+ PV L+VE YS+ Sbjct: 176 EGFEGKVERQPAR-EDIDVPV--NETLIVELYSK 206 >gi|238855293|ref|ZP_04645612.1| ribosomal protein S4 [Lactobacillus jensenii 269-3] gi|256850911|ref|ZP_05556300.1| ribosomal protein S4 [Lactobacillus jensenii 27-2-CHN] gi|260661125|ref|ZP_05862039.1| ribosomal protein S4 [Lactobacillus jensenii 115-3-CHN] gi|260664651|ref|ZP_05865503.1| ribosomal protein S4 [Lactobacillus jensenii SJ-7A-US] gi|282932414|ref|ZP_06337839.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] gi|282934177|ref|ZP_06339455.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] gi|313471896|ref|ZP_07812388.1| ribosomal protein S4 [Lactobacillus jensenii 1153] gi|238832185|gb|EEQ24503.1| ribosomal protein S4 [Lactobacillus jensenii 269-3] gi|239529185|gb|EEQ68186.1| ribosomal protein S4 [Lactobacillus jensenii 1153] gi|256615973|gb|EEU21161.1| ribosomal protein S4 [Lactobacillus jensenii 27-2-CHN] gi|260548062|gb|EEX24038.1| ribosomal protein S4 [Lactobacillus jensenii 115-3-CHN] gi|260561716|gb|EEX27688.1| ribosomal protein S4 [Lactobacillus jensenii SJ-7A-US] gi|281301791|gb|EFA94057.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] gi|281303363|gb|EFA95540.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] Length = 203 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGEHGPNNRGRLSEYGMQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + R G+ N + LE RLD IVYR T ARQ VNH Sbjct: 60 MFG-LNERQFRNLFNRAGKIRQGEHGTNFMVLLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYEVKVGQEISLKEKSKNLQQVKDALE-AVVSRPSFVSFDENKLTGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I + LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEINEA-LVVEYYNK 201 >gi|167771240|ref|ZP_02443293.1| hypothetical protein ANACOL_02598 [Anaerotruncus colihominis DSM 17241] gi|167666491|gb|EDS10621.1| hypothetical protein ANACOL_02598 [Anaerotruncus colihominis DSM 17241] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 101/183 (55%), Gaps = 6/183 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V R+ PG HG+ R K S +G+QLRAKQ+ ++YYG I E +F F+ A G Sbjct: 30 KCAVTRRATVPGQHGKARTRKASEYGVQLRAKQQARRYYG-ILESQFSKYFEMAAAKSGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ ESRLD +VYR F + ARQ V H H VNG+ NI S K GDV+ V Sbjct: 89 TGENLLRICESRLDNVVYRLGFAASRKEARQLVRHGHFTVNGKKANIPSILLKAGDVVAV 148 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 KS ++ V+EA R V ++ N NM + +P+ +D+ V + +L+VE Sbjct: 149 ASKSDKIKGVVEA--FGSRPVARWLECNKTNMTGRVIELPNR-EDIDLDV--EEHLIVEL 203 Query: 204 YSR 206 YS+ Sbjct: 204 YSK 206 >gi|104779779|ref|YP_606277.1| 30S ribosomal protein S4 [Pseudomonas entomophila L48] gi|152112249|sp|Q1IFU2|RS4_PSEE4 RecName: Full=30S ribosomal protein S4 gi|95108766|emb|CAK13460.1| 30S ribosomal protein S4 [Pseudomonas entomophila L48] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFRGYYQAAASKKGATGENLLQMLECRLDNVVYRMGFGSTRSESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 118 VSHKAISVNGKTVNIPSYQVRPGDVVSVREKSLNQLRIVQALELCAQRGRVEWVDVDAAK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NENLIVELYSK 206 >gi|332178480|gb|AEE14169.1| ribosomal protein S4 [Thermodesulfobium narugense DSM 14796] Length = 208 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 118/209 (56%), Gaps = 14/209 (6%) Query: 1 MSKRESSKH--KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 + +RE K K DR + E K + R PG+H R +K S +GL+LR KQKM Sbjct: 11 LCRREGMKLFLKGDRCLSE------KCSFDKRPTPPGMHINTR-TKTSEYGLRLREKQKM 63 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K++YG I E++FR + A++ G T NL LE RLD ++YR+ F + ARQ ++H Sbjct: 64 KRFYGLIGERQFRRYVELAEKMGGVTGDNLYFLLERRLDNVLYRSGFASSRQEARQMISH 123 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H VN R V+I SY K GDVI V++ SK L S + ER +I V++D + Sbjct: 124 GHFNVNSRRVSIPSYSVKPGDVISVRENSKGLFSPEYVEVIKERTPAPWIYVDYDKLEIK 183 Query: 179 FVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 F R+P + DVP ++ NL++EFYSR Sbjct: 184 FDRLPQREELDVP----IRENLIIEFYSR 208 >gi|255067434|ref|ZP_05319289.1| ribosomal protein S4 [Neisseria sicca ATCC 29256] gi|261364879|ref|ZP_05977762.1| ribosomal protein S4 [Neisseria mucosa ATCC 25996] gi|255048229|gb|EET43693.1| ribosomal protein S4 [Neisseria sicca ATCC 29256] gi|288566927|gb|EFC88487.1| ribosomal protein S4 [Neisseria mucosa ATCC 25996] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAITVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|167031523|ref|YP_001666754.1| 30S ribosomal protein S4 [Pseudomonas putida GB-1] gi|189045393|sp|B0KK90|RS4_PSEPG RecName: Full=30S ribosomal protein S4 gi|166858011|gb|ABY96418.1| ribosomal protein S4 [Pseudomonas putida GB-1] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 118 VSHKAISVNGKTVNIPSYQVRPGDVVAVREKSLAQLRIVQALELCAQRGRVEWVDVDAAK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NENLIVELYSK 206 >gi|51598868|ref|YP_073056.1| 30S ribosomal protein S4 [Borrelia garinii PBi] gi|61215482|sp|Q660Q7|RS4_BORGA RecName: Full=30S ribosomal protein S4 gi|51573439|gb|AAU07464.1| ribosomal protein S4 [Borrelia garinii PBi] Length = 208 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D IVYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNIVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 120 GIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|253580647|ref|ZP_04857911.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848018|gb|EES75984.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 197 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 104/172 (60%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK F + + +ADR G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFHNYYDKADRMPGQTGANLMILLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +V+R F T ARQ V+H+HVLVNG+ VNI SY K GD IE+++KSK + +LE Sbjct: 92 VVFRMGFARTRKEARQIVDHKHVLVNGKCVNIPSYLVKAGDQIEIREKSKGSERYKGILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VPE+I V+ +N+ T +P+ DVP + L+VE YS+ Sbjct: 152 VT--GGRLVPEWIDVDQENLKGTVKELPNREAIDVP----VNEMLIVELYSK 197 >gi|325272032|ref|ZP_08138475.1| 30S ribosomal protein S4 [Pseudomonas sp. TJI-51] gi|324102836|gb|EGC00240.1| 30S ribosomal protein S4 [Pseudomonas sp. TJI-51] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 118 VSHKAISVNGKTVNIPSYQVRPGDVVAVREKSLSQLRIVQALELCAQRGRVEWVDVDAAK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NENLIVELYSK 206 >gi|15676094|ref|NP_273225.1| 30S ribosomal protein S4 [Neisseria meningitidis MC58] gi|59802136|ref|YP_208848.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA 1090] gi|121634041|ref|YP_974286.1| 30S ribosomal protein S4 [Neisseria meningitidis FAM18] gi|161870895|ref|YP_001600070.1| 30S ribosomal protein S4 [Neisseria meningitidis 053442] gi|218767143|ref|YP_002341655.1| 30S ribosomal protein S4 [Neisseria meningitidis Z2491] gi|239997950|ref|ZP_04717874.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02] gi|240015072|ref|ZP_04721985.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI18] gi|240017521|ref|ZP_04724061.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA6140] gi|240081664|ref|ZP_04726207.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19] gi|240113942|ref|ZP_04728432.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11] gi|240116676|ref|ZP_04730738.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18] gi|240118898|ref|ZP_04732960.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1] gi|240122144|ref|ZP_04735106.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID24-1] gi|240124436|ref|ZP_04737392.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332] gi|240124695|ref|ZP_04737581.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679] gi|240129112|ref|ZP_04741773.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035] gi|254494697|ref|ZP_05107868.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 1291] gi|254805789|ref|YP_003084010.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha14] gi|260439565|ref|ZP_05793381.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2] gi|268593800|ref|ZP_06127967.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02] gi|268597761|ref|ZP_06131928.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19] gi|268600006|ref|ZP_06134173.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11] gi|268602343|ref|ZP_06136510.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18] gi|268604607|ref|ZP_06138774.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1] gi|268683064|ref|ZP_06149926.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332] gi|268683269|ref|ZP_06150131.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679] gi|268687494|ref|ZP_06154356.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035] gi|291042801|ref|ZP_06568542.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2] gi|293398178|ref|ZP_06642383.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae F62] gi|304388967|ref|ZP_07371014.1| 30S ribosomal protein S4 [Neisseria meningitidis ATCC 13091] gi|54039509|sp|P66561|RS4_NEIMB RecName: Full=30S ribosomal protein S4 gi|54041962|sp|P66560|RS4_NEIMA RecName: Full=30S ribosomal protein S4 gi|75507306|sp|Q5F5V1|RS4_NEIG1 RecName: Full=30S ribosomal protein S4 gi|152112237|sp|A1KRJ8|RS4_NEIMF RecName: Full=30S ribosomal protein S4 gi|189045388|sp|A9M3U1|RS4_NEIM0 RecName: Full=30S ribosomal protein S4 gi|7225385|gb|AAF40624.1| 30S ribosomal protein S4 [Neisseria meningitidis MC58] gi|59719031|gb|AAW90436.1| putative 30S ribosomal protein S4 [Neisseria gonorrhoeae FA 1090] gi|120865747|emb|CAM09476.1| 30S ribosomal protein S4 [Neisseria meningitidis FAM18] gi|121051151|emb|CAM07422.1| 30S ribosomal protein S4 [Neisseria meningitidis Z2491] gi|161596448|gb|ABX74108.1| 30S ribosomal protein S4 [Neisseria meningitidis 053442] gi|226513737|gb|EEH63082.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 1291] gi|254669331|emb|CBA08372.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha14] gi|254670762|emb|CBA07036.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha153] gi|254672692|emb|CBA06587.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha275] gi|261391703|emb|CAX49152.1| 30S ribosomal protein S4 [Neisseria meningitidis 8013] gi|268547189|gb|EEZ42607.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02] gi|268551549|gb|EEZ46568.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19] gi|268584137|gb|EEZ48813.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11] gi|268586474|gb|EEZ51150.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18] gi|268588738|gb|EEZ53414.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1] gi|268623348|gb|EEZ55748.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332] gi|268623553|gb|EEZ55953.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679] gi|268627778|gb|EEZ60178.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035] gi|291013235|gb|EFE05201.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2] gi|291611441|gb|EFF40511.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae F62] gi|304337101|gb|EFM03288.1| 30S ribosomal protein S4 [Neisseria meningitidis ATCC 13091] gi|308388383|gb|ADO30703.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha710] gi|319411349|emb|CBY91760.1| 30S ribosomal protein S4 [Neisseria meningitidis WUE 2594] gi|325129086|gb|EGC51935.1| ribosomal protein S4 [Neisseria meningitidis N1568] gi|325131057|gb|EGC53781.1| ribosomal protein S4 [Neisseria meningitidis OX99.30304] gi|325133079|gb|EGC55751.1| ribosomal protein S4 [Neisseria meningitidis M6190] gi|325135173|gb|EGC57799.1| ribosomal protein S4 [Neisseria meningitidis M13399] gi|325137225|gb|EGC59820.1| ribosomal protein S4 [Neisseria meningitidis M0579] gi|325139057|gb|EGC61603.1| ribosomal protein S4 [Neisseria meningitidis ES14902] gi|325141180|gb|EGC63680.1| ribosomal protein S4 [Neisseria meningitidis CU385] gi|325143257|gb|EGC65596.1| ribosomal protein S4 [Neisseria meningitidis 961-5945] gi|325145364|gb|EGC67641.1| ribosomal protein S4 [Neisseria meningitidis M01-240013] gi|325197454|gb|ADY92910.1| ribosomal protein S4 [Neisseria meningitidis G2136] gi|325199380|gb|ADY94835.1| ribosomal protein S4 [Neisseria meningitidis H44/76] gi|325202998|gb|ADY98452.1| ribosomal protein S4 [Neisseria meningitidis M01-240149] gi|325205260|gb|ADZ00713.1| ribosomal protein S4 [Neisseria meningitidis M04-240196] gi|325207204|gb|ADZ02656.1| ribosomal protein S4 [Neisseria meningitidis NZ-05/33] Length = 206 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|294674745|ref|YP_003575361.1| 30S ribosomal protein S4 [Prevotella ruminicola 23] gi|294473372|gb|ADE82761.1| ribosomal protein S4 [Prevotella ruminicola 23] Length = 202 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S + + L KQK K Sbjct: 1 MARYLGPKSKIARRFGEPIFGADKV-LSRRNFPPGQHGNNRRRKMSEYAVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKAEGITGEVLLQNLESRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV--AT 178 + V+G+ VNI SY K G V+ V++KSK L V+EA+ LA + +Y + D V Sbjct: 119 ITVDGQVVNIPSYAVKPGQVVAVREKSKSL-EVIEAA-LAGFNHSKYPWIEWDENVKGGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|269469225|gb|EEZ80756.1| ribosomal protein S4 [uncultured SUP05 cluster bacterium] Length = 208 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 110/175 (62%), Gaps = 6/175 (3%) Query: 34 PGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG+HG R+ K + +GLQLR KQK+++ YG I EK+FR +K+A + +G T NL+S L Sbjct: 38 PGMHGANARRQKGTEYGLQLREKQKVRRIYG-ILEKQFRLYYKKASQKKGSTGDNLLSLL 96 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +VYR F T ARQ V+H+ +LVNG VNI SY+ D I V++KSK+ + Sbjct: 97 ECRLDNVVYRMGFGATRAEARQLVSHKSILVNGSIVNIPSYQVSANDEISVREKSKKQSR 156 Query: 153 VLEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A +LAE+ E++ V++ + F +P+ D+ + + +L+VE YS+ Sbjct: 157 IQLAVELAEQSGQVEWVDVDNKALKGVFKNVPAR-DDLSSDI--EEHLIVELYSK 208 >gi|150392132|ref|YP_001322181.1| ribosomal protein S4 [Alkaliphilus metalliredigens QYMF] gi|171460826|sp|A6TWF4|RS4A_ALKMQ RecName: Full=30S ribosomal protein S4 A gi|149951994|gb|ABR50522.1| ribosomal protein S4 [Alkaliphilus metalliredigens QYMF] Length = 207 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R++ PG HG RK K S +G+QLR Sbjct: 1 MARYTDAVCRLCRREGLKLYLKGERCYTDKCAITKRNFAPGQHGTSRK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K++YG + E +FR F AD+ G+T NL+ LE+RLD +VYR + ARQ Sbjct: 60 KQKAKRFYG-VLESQFRKYFDMADKQAGNTGENLLRILETRLDNLVYRLGLASSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H VNG V+I SY K GD + V +KS E + + VP +++V+ + Sbjct: 119 LVVHGHFTVNGGKVDIPSYLVKAGDAVAVSEKSTNSPKFKELKENFKGTVPTWLTVDSEK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +PS +D+ P+ NL+VE YS+ Sbjct: 179 LEGKVAAMPSR-EDIDLPI--SENLIVELYSK 207 >gi|190572967|ref|YP_001970812.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia K279a] gi|194364557|ref|YP_002027167.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia R551-3] gi|254521741|ref|ZP_05133796.1| ribosomal protein S4 [Stenotrophomonas sp. SKA14] gi|226695080|sp|B4SLH4|RS4_STRM5 RecName: Full=30S ribosomal protein S4 gi|226695081|sp|B2FQK7|RS4_STRMK RecName: Full=30S ribosomal protein S4 gi|190010889|emb|CAQ44498.1| putative 30S ribosomal subunit protein S4 [Stenotrophomonas maltophilia K279a] gi|194347361|gb|ACF50484.1| ribosomal protein S4 [Stenotrophomonas maltophilia R551-3] gi|219719332|gb|EED37857.1| ribosomal protein S4 [Stenotrophomonas sp. SKA14] Length = 209 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 11/204 (5%) Query: 10 KIDRRIGENL-WGRPKSPVNTRS---YGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGD 64 K+ RR G +L P ++++ PG HG RK K S + QLR KQK+K+ YG Sbjct: 10 KLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREKQKVKRIYG- 68 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 + E++FR+ +K+A +G+T NL+ LE+RLD +VYR F T AARQ V+HR V VN Sbjct: 69 LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLVSHRGVTVN 128 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDV-PEYISVNHDNMVATFVRI 182 G+SVN+ SY+ K GD I + +K+ + V EA + A+ D+ P ++ V+ F + Sbjct: 129 GKSVNLASYQVKAGDAIALSEKAAKQLRVQEALTVAAQHDLSPSWVEVDSGKFTGIFKAV 188 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + L+VE YS+ Sbjct: 189 PDR-SDLPADI--NEALIVELYSK 209 >gi|296129661|ref|YP_003636911.1| ribosomal protein S4 [Cellulomonas flavigena DSM 20109] gi|296021476|gb|ADG74712.1| ribosomal protein S4 [Cellulomonas flavigena DSM 20109] Length = 208 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + R Y PG HG+ R+ S + ++LR KQ+++ Y + EK+ Sbjct: 12 RLSRALGLALTPKAVKHFEKRPYPPGEHGRARRRTESDYAVRLREKQRLRAQYA-LREKQ 70 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 ++ A ++ G T L+ LE+RLD +V RA F TI ARQ V HRHVLV+G+ V+ Sbjct: 71 LAKAYENARKAPGLTGEALVEDLETRLDALVLRAGFARTILQARQTVTHRHVLVDGKIVD 130 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S+R KEG +++K KS+ A+ A RD VP Y+ V + + AT VR P Sbjct: 131 RPSFRVKEGQTLQIKPKSQATVPFQVAAAGAHRDVLPAVPGYLEVQLEKLSATLVRRP-- 188 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K PV + LVVE+Y+R Sbjct: 189 -KRAEVPVTCEVQLVVEYYAR 208 >gi|218885212|ref|YP_002434533.1| 30S ribosomal protein S4 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226732177|sp|B8DNK8|RS4_DESVM RecName: Full=30S ribosomal protein S4 gi|218756166|gb|ACL07065.1| ribosomal protein S4 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 208 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDAKCRMCRREGTKLFLKGDRCYTDKCAYDRRPYAPGQHGRARK-KVSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR F +AD ++G T NL++ LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRVYG-VLERQFRGYFHKADMAKGVTGANLLAILERRLDNVIYRLGFANSRQQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR NI S + + GD+IEV + S+++ + EA + +A R P ++ V+ Sbjct: 119 LVRHGIFTLNGRKANIPSMQVRVGDIIEVPEASRKIPVIAEAQEVIARRGCPSWLEVDGP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T +P +D+ +P+ +L+VE YS+ Sbjct: 179 SFKGTVKALPQR-EDIQFPI--NEHLIVELYSK 208 >gi|297205789|ref|ZP_06923184.1| 30S ribosomal protein S4 [Lactobacillus jensenii JV-V16] gi|297148915|gb|EFH29213.1| 30S ribosomal protein S4 [Lactobacillus jensenii JV-V16] Length = 235 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G+QL KQK++ Sbjct: 33 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGEHGPNNRGRLSEYGMQLHEKQKLRW 91 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + R G+ N + LE RLD IVYR T ARQ VNH Sbjct: 92 MFG-LNERQFRNLFNRAGKIRQGEHGTNFMVLLERRLDNIVYRLGLATTREQARQLVNHG 150 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + + + Sbjct: 151 HILVDGKRVDIPSYEVKVGQEISLKEKSKNLQQVKDALE-AVVSRPSFVSFDENKLTGSL 209 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I + LVVE+Y++ Sbjct: 210 VRLPE--RDEMEPEINEA-LVVEYYNK 233 >gi|319942197|ref|ZP_08016513.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 3_1_45B] gi|319804250|gb|EFW01142.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 3_1_45B] Length = 208 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 5/174 (2%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG+ ++ S +G Q+R QK K+ YG + E++FR F EA R RG+T L+ LE Sbjct: 39 PGQHGKISGARTSDYGNQMRETQKAKRMYG-VLERQFRRYFAEASRLRGNTGEKLLQLLE 97 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T +RQ V+H + VNGR VNI SY + GDVI +++K+++ + Sbjct: 98 SRLDNVVYRMGFGSTRAESRQLVSHGAIEVNGRKVNIPSYSVRAGDVITIREKAQKQVRI 157 Query: 154 LEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 EA +LA+++ P ++ V+ TF P+ +D P I + L++E YSR Sbjct: 158 AEALELAQQNGFPAWVEVDAKKFTGTFKNAPA--RDEIAPEINEA-LIIERYSR 208 >gi|285017343|ref|YP_003375054.1| 30s ribosomal protein s4 [Xanthomonas albilineans GPE PC73] gi|283472561|emb|CBA15066.1| probable 30s ribosomal protein s4 [Xanthomonas albilineans] Length = 209 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 11/204 (5%) Query: 10 KIDRRIGENL-WGRPKSPVNTRS---YGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGD 64 K+ RR G +L P ++++ PG HG RK K S + QLR KQK+K+ Y Sbjct: 10 KLARREGADLSLKSPARALDSKCKLEQKPGQHGATARKGKLSDYATQLREKQKVKRIYC- 68 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 + E++FR+ +K+A +G+T NL+ LE+RLD +VYR F T AARQ V+HR VLVN Sbjct: 69 LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAARQLVSHRGVLVN 128 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRI 182 G+SVN+ SY+ K GD I + +K+++ V EA +A+ P ++ V+ F + Sbjct: 129 GKSVNLASYQVKAGDAIALSEKAQKQLRVQEALSVADTHDLTPSWVEVDSKKFSGIFKAV 188 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P P + L+VE YS+ Sbjct: 189 PDR---ADLPADINEALIVELYSK 209 >gi|323339475|ref|ZP_08079754.1| 30S ribosomal protein S4 [Lactobacillus ruminis ATCC 25644] gi|323093089|gb|EFZ35682.1| 30S ribosomal protein S4 [Lactobacillus ruminis ATCC 25644] Length = 202 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HGQ + K S +GLQLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYAPGQHGQNNRRKLSEYGLQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++F ++F +A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-LSERQFANLFVKAGKIREGKHGDNFMILLERRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI ++++SK L V +A + P ++S + + M + Sbjct: 119 HITVDGKRVDIPSYEVKPGQVISLRERSKNLQVVKDALEAVVGRAP-FVSFDENKMEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVE+Y++ Sbjct: 178 VRLPEREE---LDANIDEALVVEYYNK 201 >gi|299138173|ref|ZP_07031353.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX8] gi|298600103|gb|EFI56261.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX8] Length = 210 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/186 (42%), Positives = 112/186 (60%), Gaps = 8/186 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 K PV R++ PG HGQ +K K +GLQLR KQK K+ Y + E +FR+ +++A G Sbjct: 30 KCPVEKRNFPPGQHGQSKKQKKVVGYGLQLREKQKAKRIYFTL-ETQFRAYYEKAANRPG 88 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE+RLD + YR F + ARQ V H HV VNGR VNI S++CK GD I Sbjct: 89 VTGELLLQQLETRLDNVCYRLGFALSRRQARQVVRHGHVQVNGRKVNIPSFQCKIGDEIA 148 Query: 143 VKQKSKQLASVLEASQ--LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +++ SK+L +LEASQ L+ ++ +I N +N+ + +P +DV PV Q L+ Sbjct: 149 IREGSKKLV-LLEASQDFLSGQNRVGWIDANRENLSGKIIALPKR-EDVNLPVNEQ--LI 204 Query: 201 VEFYSR 206 VE YS+ Sbjct: 205 VELYSK 210 >gi|284799892|ref|ZP_05985156.2| ribosomal protein S4 [Neisseria subflava NJ9703] gi|284796551|gb|EFC51898.1| ribosomal protein S4 [Neisseria subflava NJ9703] Length = 173 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 109/175 (62%), Gaps = 6/175 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG HG + K + S +GLQLR KQK+++ YG + E++FR F EADR +G T L+ L Sbjct: 4 APGQHGAK-KPRLSDYGLQLREKQKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLL 61 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 ESRLD +VYR F T ARQ V+H+ ++VNG+ VNI S++ K GDV+ V++K+K+ Sbjct: 62 ESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQVR 121 Query: 153 VLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + EA LA + +P ++SV+ D + F +P + + LVVEFYS+ Sbjct: 122 IQEALSLATQIGLPSWVSVDADKLEGVFKNMPDRSE---LSGDINEQLVVEFYSK 173 >gi|26987219|ref|NP_742644.1| 30S ribosomal protein S4 [Pseudomonas putida KT2440] gi|148545763|ref|YP_001265865.1| 30S ribosomal protein S4 [Pseudomonas putida F1] gi|37999419|sp|Q88QL2|RS4_PSEPK RecName: Full=30S ribosomal protein S4 gi|172048431|sp|A5VXS1|RS4_PSEP1 RecName: Full=30S ribosomal protein S4 gi|24981858|gb|AAN66108.1|AE016239_3 ribosomal protein S4 [Pseudomonas putida KT2440] gi|148509821|gb|ABQ76681.1| SSU ribosomal protein S4P [Pseudomonas putida F1] gi|313496843|gb|ADR58209.1| RpsD [Pseudomonas putida BIRD-1] Length = 206 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 124/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 118 VSHKAISVNGKTVNIPSYQVRPGDVVAVREKSLGQLRIVQALELCAQRGRVEWVDVDAAK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + NL+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NENLIVELYSK 206 >gi|300857220|ref|YP_003782204.1| 30S ribosomal protein S4 [Clostridium ljungdahlii DSM 13528] gi|300437335|gb|ADK17102.1| 30S ribosomal protein S4 [Clostridium ljungdahlii DSM 13528] Length = 206 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR G L+ + K + R Y PG HGQRRK K S +GLQLR Sbjct: 1 MARYTGSVCRLCRREGLKLFLKGDRCYTDKCAFSRRGYAPGQHGQRRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR ++ ADR +G T NL+ LE+RLD ++YR + + ARQ Sbjct: 60 KQKAKRIYG-LLEGQFRKYYETADRKKGITGENLLVLLETRLDNVIYRLGYGQSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H LVNGR V+I S++ D I V KSK S + AE + +P ++ N Sbjct: 119 LVTHGHFLVNGRKVDIPSFKVSVNDNITVSDKSK---SSEKFKTFAENPKTLPSWLEGNV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N A +R P+ +D+ PV L+VE YS+ Sbjct: 176 ENFQAKVLRQPTR-EDIDVPV--NETLIVELYSK 206 >gi|254449317|ref|ZP_05062762.1| ribosomal protein S4 [gamma proteobacterium HTCC5015] gi|198261076|gb|EDY85376.1| ribosomal protein S4 [gamma proteobacterium HTCC5015] Length = 173 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG Q R+ + S +GLQLR KQK+++ YG + E++FR+ +K A R +G T NL+ LE Sbjct: 5 PG-QAQARRGRLSDYGLQLREKQKVRRIYG-VLERQFRNYYKTAARQKGSTGENLLKLLE 62 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR + T ARQ V+H+ +LVNG VN+ SY+ K GD ++V+++S Q + Sbjct: 63 CRLDNVVYRMGYGSTRAEARQLVSHKAILVNGAVVNVASYQVKAGDEVKVREQSAQQTRI 122 Query: 154 LEASQLAERDVP-EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +LA++ P E++ V+ + F +P D+P + +L+VE YS+ Sbjct: 123 QDSMELAQQRGPVEWMEVDTKKLSGVFKNVPDR-SDLPAEI--NESLIVELYSK 173 >gi|300728417|ref|ZP_07061779.1| ribosomal protein S4 [Prevotella bryantii B14] gi|299774336|gb|EFI70966.1| ribosomal protein S4 [Prevotella bryantii B14] Length = 202 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKQSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A +S G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNMFDKAAKSDGITGEVLLQELESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G VI V++K+K L + A +I + + F+ Sbjct: 119 IVVDGAVVNIPSYSVKPGQVIGVREKAKSLEVIEGALAGFNHSKYPWIEWDENTKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + Q L+VE YS+ Sbjct: 179 HRPER-ADIPENIKEQ--LIVELYSK 201 >gi|300811296|ref|ZP_07091793.1| ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497660|gb|EFK32685.1| ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 203 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYVPGQHGPNHRGRLSEYGMQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G +SE++FR++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LSERQFRTLFARAGKIREGQHGTNFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+ V+G+ V+I SY K G I +K+KSK L V +A + +A R P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALEAVASR--PSFVSFDEDKMEGQ 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P +D P I + LVVE+Y++ Sbjct: 177 LVRFPE--RDEMEPEIDEA-LVVEYYNK 201 >gi|219684339|ref|ZP_03539283.1| ribosomal protein S4 [Borrelia garinii PBr] gi|219672328|gb|EED29381.1| ribosomal protein S4 [Borrelia garinii PBr] Length = 208 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKKIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D IVYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNIVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 120 GIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|257417204|ref|ZP_05594198.1| 30S ribosomal protein S4 [Enterococcus faecalis AR01/DG] gi|257159032|gb|EEU88992.1| 30S ribosomal protein S4 [Enterococcus faecalis ARO1/DG] Length = 203 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KS+ ++++ EA + + P ++S + + + +F Sbjct: 119 HITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVE-STVGRPAFVSFDTEKLEGSF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D YP I + LVVE+Y++ Sbjct: 178 TRLPE--RDELYPEIDEA-LVVEYYNQ 201 >gi|77461277|ref|YP_350784.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf0-1] gi|90101709|sp|Q3K611|RS4_PSEPF RecName: Full=30S ribosomal protein S4 gi|77385280|gb|ABA76793.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf0-1] Length = 206 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +K A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VN+ SY+ + GDV+ V++K+K +++A +L A+R E++ V+ + Sbjct: 118 VSHKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALELCAQRGRVEWVEVDAEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|226321184|ref|ZP_03796723.1| ribosomal protein S4 [Borrelia burgdorferi 29805] gi|226233417|gb|EEH32159.1| ribosomal protein S4 [Borrelia burgdorferi 29805] Length = 208 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D +VYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAVSRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 120 GIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|294101656|ref|YP_003553514.1| ribosomal protein S4 [Aminobacterium colombiense DSM 12261] gi|293616636|gb|ADE56790.1| ribosomal protein S4 [Aminobacterium colombiense DSM 12261] Length = 209 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R ++K S +GL+LR KQK++++YG ++E +FR +F EA R G T HN + LE RLD I Sbjct: 46 RPRAKMSEYGLRLREKQKLRRFYG-MNEGQFRRMFGEASRMSGVTGHNFLQLLERRLDNI 104 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 VYR + ARQ V H H V+GR V++ SY + G V+ V + SK++A + E +++ Sbjct: 105 VYRMGLATSRSQARQLVLHGHFTVDGRKVDVPSYLIRAGAVVAVAENSKEVAIIRENAEV 164 Query: 160 -AERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 A R +PE++ VN + M A + IP + DVP + LVVEFY+R Sbjct: 165 AASRMIPEWLEVNSERMEAKVLSIPMREQIDVP----VNEQLVVEFYAR 209 >gi|304413169|ref|ZP_07394642.1| 30S ribosomal subunit protein S4 [Candidatus Regiella insecticola LSR1] gi|304284012|gb|EFL92405.1| 30S ribosomal subunit protein S4 [Candidatus Regiella insecticola LSR1] Length = 206 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYG------PGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ KS V T PG HG K + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLF--LKSGVRTIDSKCKIDQPPGQHGAH-KPRLSDYGVQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ Sbjct: 58 KQKVRRMYG-VLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAESRQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V+H+ +LVNGR VNI SY+ +I +++K+K+ + + A +L E R+ P ++ V+ Sbjct: 117 LVSHKGILVNGRVVNIASYQVLPNAIISIREKAKKQSRIRAALELFEQREKPIWLEVDAA 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + R+P P + +L+VE YS+ Sbjct: 177 KMEGVYKRLPER---TDLPADINEHLIVELYSK 206 >gi|195941435|ref|ZP_03086817.1| 30S ribosomal protein S4 [Borrelia burgdorferi 80a] gi|216264611|ref|ZP_03436603.1| ribosomal protein S4 [Borrelia burgdorferi 156a] gi|218249862|ref|YP_002375120.1| ribosomal protein S4 [Borrelia burgdorferi ZS7] gi|221218143|ref|ZP_03589609.1| ribosomal protein S4 [Borrelia burgdorferi 72a] gi|223889058|ref|ZP_03623648.1| ribosomal protein S4 [Borrelia burgdorferi 64b] gi|224532426|ref|ZP_03673053.1| ribosomal protein S4 [Borrelia burgdorferi WI91-23] gi|225548830|ref|ZP_03769807.1| ribosomal protein S4 [Borrelia burgdorferi 94a] gi|226697807|sp|B7J2H5|RS4_BORBZ RecName: Full=30S ribosomal protein S4 gi|215981084|gb|EEC21891.1| ribosomal protein S4 [Borrelia burgdorferi 156a] gi|218165050|gb|ACK75111.1| ribosomal protein S4 [Borrelia burgdorferi ZS7] gi|221192091|gb|EEE18312.1| ribosomal protein S4 [Borrelia burgdorferi 72a] gi|223885484|gb|EEF56584.1| ribosomal protein S4 [Borrelia burgdorferi 64b] gi|224512636|gb|EEF83010.1| ribosomal protein S4 [Borrelia burgdorferi WI91-23] gi|225370433|gb|EEG99869.1| ribosomal protein S4 [Borrelia burgdorferi 94a] gi|312148256|gb|ADQ30915.1| ribosomal protein S4 [Borrelia burgdorferi JD1] gi|312149661|gb|ADQ29732.1| ribosomal protein S4 [Borrelia burgdorferi N40] Length = 208 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D +VYRA F + ARQ V+H Sbjct: 61 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 120 GIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|54296389|ref|YP_122758.1| 30S ribosomal protein S4 [Legionella pneumophila str. Paris] gi|61215409|sp|Q5X835|RS4_LEGPA RecName: Full=30S ribosomal protein S4 gi|53750174|emb|CAH11566.1| 30S ribosomal subunit protein S4 [Legionella pneumophila str. Paris] Length = 206 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/214 (39%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + KS + PG HG ++ SY G+QLR K Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKL-PGQHGDKKPRLNSY-GIQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG I EK+FR+ +K+A R +G T NL++ LE RLD +VYR F T ARQ Sbjct: 59 QKIRRLYG-ILEKQFRNYYKKAARQKGSTGENLMALLERRLDNVVYRMGFASTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDN 174 V H+ +LVN + VN+ S+ GD I V+QK+K + A L+E+ P ++I+V+ + Sbjct: 118 VAHKAILVNDKVVNVPSFLVNPGDTISVRQKAKNQGRIQAALALSEQRAPCDWITVDTGS 177 Query: 175 MVATFVRIPSSLKDVP--YPVIMQPNLVVEFYSR 206 TF P +L D+ Y V NLVVE YS+ Sbjct: 178 FKGTFSTAP-TLMDLSSDYNV----NLVVELYSK 206 >gi|170758349|ref|YP_001788793.1| 30S ribosomal protein S4 [Clostridium botulinum A3 str. Loch Maree] gi|169405338|gb|ACA53749.1| 30S ribosomal protein S4 [Clostridium botulinum A3 str. Loch Maree] Length = 206 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/214 (39%), Positives = 117/214 (54%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGATCRLCRREGLKLFLKGDRCYTDKCAFARRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR ++EADR RG T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-ILERQFRGYYEEADRRRGITGENLLRLLEMRLDNVVYRLGYGNSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H LVNG+ V+I SY+ DVI V KSK + + AE + +P ++S N Sbjct: 119 LVTHGHFLVNGKKVDIPSYQVSANDVITVCDKSK---ATEKFKTFAENPKTLPAWLSGNV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R P+ +D+ PV L+VE YS+ Sbjct: 176 EGFEGKVERQPAR-EDMDVPV--NETLIVELYSK 206 >gi|309389907|gb|ADO77787.1| SSU ribosomal protein S4P [Halanaerobium praevalens DSM 2228] Length = 208 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 123/215 (57%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + S K+ RR GE L+ + K + R Y PG HGQ R K S +G QLR Sbjct: 1 MGRYTGSVCKLCRREGEKLYLKGARCYSDKCSFDRRPYVPGEHGQGR-HKVSEYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FR+ F++A+ G T N + LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRIYG-IMEKQFRNYFEKAENIAGVTGENFLQLLERRLDNVVYRMGFASSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVK---QKSKQLASVLEASQLAERDVPEYISVN 171 FV H H+ VNGR V+I SY+ D I+VK +KSK+ + E + A+ E+++ + Sbjct: 119 FVLHGHITVNGRKVDIPSYQIDIDDEIKVKDSSRKSKRFKEIFEYN--ADFASQEWLNSD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T + +P +D+ YPV + +L+VE+YSR Sbjct: 177 LEKAEGTIIALPER-EDIDYPV--EEHLIVEYYSR 208 >gi|15594960|ref|NP_212749.1| 30S ribosomal protein S4 [Borrelia burgdorferi B31] gi|3914903|sp|O51560|RS4_BORBU RecName: Full=30S ribosomal protein S4 gi|2688529|gb|AAC66961.1| ribosomal protein S4 (rpsD) [Borrelia burgdorferi B31] Length = 209 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 2 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 61 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T NL+S LE R+D +VYRA F + ARQ V+H Sbjct: 62 KFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSH 120 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNM 175 +++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 121 GIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDL 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 180 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 207 >gi|45644720|gb|AAS73108.1| predicted ribosomal protein S4 [uncultured marine gamma proteobacterium EBAC20E09] Length = 211 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 10/176 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+HG R + S +GLQLR KQK+++ YG + EK+FR+ +K+A S+G+T NL+S LE Sbjct: 43 PGVHGAMR-GRLSDYGLQLREKQKVRRMYG-VLEKQFRNYYKKAASSKGNTGENLLSLLE 100 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QL 150 RLD +VYR F T ARQ V+H+ +VNG +VNI SY+ + GD IEV++ K ++ Sbjct: 101 KRLDNVVYRMGFGCTRAEARQMVSHKAFMVNGSTVNIPSYQVQPGDEIEVRESKKGHLRI 160 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A+ L+ + A R+ +++ V+ N+ F +P + NL+VE YS+ Sbjct: 161 AAALKIA--ATREECDWLEVDDKNLKGVFKSVPDR---TDLSAEINENLIVELYSK 211 >gi|256842855|ref|ZP_05548343.1| 30S ribosomal protein S4 [Lactobacillus crispatus 125-2-CHN] gi|256848781|ref|ZP_05554215.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-1A-US] gi|262045821|ref|ZP_06018785.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-3A-US] gi|293381690|ref|ZP_06627671.1| 30S ribosomal protein S4 [Lactobacillus crispatus 214-1] gi|295692644|ref|YP_003601254.1| 30S ribosomal protein s4 [Lactobacillus crispatus ST1] gi|256614275|gb|EEU19476.1| 30S ribosomal protein S4 [Lactobacillus crispatus 125-2-CHN] gi|256714320|gb|EEU29307.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-1A-US] gi|260573780|gb|EEX30336.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-3A-US] gi|290921737|gb|EFD98758.1| 30S ribosomal protein S4 [Lactobacillus crispatus 214-1] gi|295030750|emb|CBL50229.1| 30S ribosomal protein S4 [Lactobacillus crispatus ST1] Length = 203 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGQHGVNFMILLERRLDSLVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALE-AVTARPSFVSFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I + LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEIDEA-LVVEWYNK 201 >gi|110005221|emb|CAK99547.1| probable 30s ribosomal protein s4 [Spiroplasma citri] Length = 204 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 120/208 (57%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++ S K RR G ++ K S R+ PG HGQRR SK S +GLQL KQK+ Sbjct: 1 MARYRGSIFKKARRYGFSILENDKEFSKGKKRTTPPGQHGQRR-SKLSNYGLQLHEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG ++E++FR+ + ++ + +G N + LESRLD IV+R T ARQ VNH Sbjct: 60 CYMYG-LTERQFRNTYSKSKKMKGIAGTNFLIMLESRLDNIVHRMGLSQTRAGARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LVNG+ V+I SY CK GDVI VK+ ++ +LE+ ++ E++ + M T Sbjct: 119 AHILVNGKKVDIPSYNCKPGDVISVKESLQKNVKILESLD-SQVSTLEFVKFDKTKMTGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR P L++ I + L+VE+Y+R Sbjct: 178 YVRFP--LREELNSNINEA-LIVEWYNR 202 >gi|27262234|gb|AAN87398.1| SSU ribosomal protein S4 [Heliobacillus mobilis] Length = 208 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 114/184 (61%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V+ R+Y PG HGQ RK K S +GLQLR KQK ++ YG I E +FR+ F +ADR +G Sbjct: 30 KCAVDRRTYAPGQHGQGRK-KISEYGLQLREKQKARRIYG-ILEGQFRTYFSKADRQQGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T HNL+ LE RLD +V+R F + ARQFV H H +NG VNI S + + GDVI++ Sbjct: 88 TGHNLLRLLERRLDNVVFRLGFARSRNEARQFVLHNHFTLNGHKVNIASIQLRVGDVIQL 147 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K+KSK E + L ++ P ++ ++ +N+ V +P+ +D+ V Q +L+VE Sbjct: 148 KEKSKDTPLFKEIVASLGQKTPPAWLELDVNNLSGRVVALPNR-EDIDTTV--QEHLIVE 204 Query: 203 FYSR 206 YSR Sbjct: 205 LYSR 208 >gi|194099938|ref|YP_002003076.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae NCCP11945] gi|193935228|gb|ACF31052.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae NCCP11945] gi|316985689|gb|EFV64635.1| ribosomal protein S4 [Neisseria meningitidis H44/76] gi|317165390|gb|ADV08931.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae TCDC-NG08107] Length = 196 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG + K + S +GLQLR KQK+++ YG + E++FR F EADR +G T L+ LE Sbjct: 28 PGQHGAK-KPRLSDYGLQLREKQKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLE 85 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T ARQ V+H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + Sbjct: 86 SRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRI 145 Query: 154 LEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 EA LA + +P ++SV+ D + F +P + + LVVEFYS+ Sbjct: 146 QEALGLATQIGLPGWVSVDADKLEGVFKNMPDRSE---LTGDINEQLVVEFYSK 196 >gi|317503955|ref|ZP_07961963.1| 30S ribosomal protein S4 [Prevotella salivae DSM 15606] gi|315664981|gb|EFV04640.1| 30S ribosomal protein S4 [Prevotella salivae DSM 15606] Length = 201 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LE RLD +VYR PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVYRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN--MVAT 178 + V+G+ VNI S+ K G V+ V++KSK L V+EA+ LA + +Y + D+ Sbjct: 119 ITVDGKVVNIPSFAVKPGMVVAVREKSKSL-EVIEAA-LAGFNHSKYPWIEWDDNAKCGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|70732860|ref|YP_262627.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf-5] gi|90101707|sp|Q4K556|RS4_PSEF5 RecName: Full=30S ribosomal protein S4 gi|68347159|gb|AAY94765.1| ribosomal protein S4 [Pseudomonas fluorescens Pf-5] Length = 206 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +K+A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKQAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ + VNG++VN+ SY+ + GDV+ V++K+K +++A L A+R E++ V+ + Sbjct: 118 VSHKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALDLCAQRGRVEWVEVDTEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|254881348|ref|ZP_05254058.1| 30S ribosomal protein S4 [Bacteroides sp. 4_3_47FAA] gi|319640349|ref|ZP_07995074.1| hypothetical protein HMPREF9011_00671 [Bacteroides sp. 3_1_40A] gi|254834141|gb|EET14450.1| 30S ribosomal protein S4 [Bacteroides sp. 4_3_47FAA] gi|317388124|gb|EFV68978.1| hypothetical protein HMPREF9011_00671 [Bacteroides sp. 3_1_40A] Length = 201 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A + G T L+ LE+RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASANGITGEILLQSLEARLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G+ VNI S+ K G ++ V+++SK L + A+ LA + +Y + D V Sbjct: 119 ITVDGKVVNIPSFSVKPGQIVGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDETSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|282880975|ref|ZP_06289666.1| ribosomal protein S4 [Prevotella timonensis CRIS 5C-B1] gi|281305198|gb|EFA97267.1| ribosomal protein S4 [Prevotella timonensis CRIS 5C-B1] Length = 201 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLESRLDNIVFRLGIAPTRAAARQMVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G ++ V++K+K L + E+ +I + + F+ Sbjct: 119 IVVDGKVVNIPSYAVKPGQIVGVREKAKSLEVIEESLAGFNHSKYPWIEWDESSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + Q L+VE YS+ Sbjct: 179 HQPER-ADIPENIKEQ--LIVELYSK 201 >gi|46579739|ref|YP_010547.1| 30S ribosomal protein S4 [Desulfovibrio vulgaris str. Hildenborough] gi|120602784|ref|YP_967184.1| 30S ribosomal protein S4 [Desulfovibrio vulgaris DP4] gi|61215610|sp|Q72CF5|RS4_DESVH RecName: Full=30S ribosomal protein S4 gi|152060946|sp|A1VE91|RS4_DESVV RecName: Full=30S ribosomal protein S4 gi|46449154|gb|AAS95806.1| ribosomal protein S4 [Desulfovibrio vulgaris str. Hildenborough] gi|120563013|gb|ABM28757.1| SSU ribosomal protein S4P [Desulfovibrio vulgaris DP4] gi|311233530|gb|ADP86384.1| ribosomal protein S4 [Desulfovibrio vulgaris RCH1] Length = 208 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K + RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTDAKCRQCRREGTKLFLKGDRCFTDKCAFDRRPYAPGQHGRARK-KVSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++F + F +AD ++G T NL+S LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRMYG-ILEQQFHAYFTKADMAKGVTGANLLSLLERRLDNVIYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VNI S + + GD IEV +KS+++ + EA + +A R P ++ + Sbjct: 119 LVRHGIFTLNGRKVNIPSLQVRIGDTIEVPEKSRKIPVLAEAQEVIARRGCPAWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P +D+ +P+ +L+VE YS+ Sbjct: 179 NFRGVVKALPQR-EDIQFPI--NEHLIVELYSK 208 >gi|261854973|ref|YP_003262256.1| ribosomal protein S4 [Halothiobacillus neapolitanus c2] gi|261835442|gb|ACX95209.1| ribosomal protein S4 [Halothiobacillus neapolitanus c2] Length = 207 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 13/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS------YGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ KS V + PG HG RK K S +G+QLR Sbjct: 1 MARYLGPKCKLSRREGTDLF--LKSGVRSHEDKCHHDRAPGQHGAARKQKVSEYGVQLRE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++F + FK+A + +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 KQKLRRIYG-VLERQFANYFKKAAQLKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+HR + VNG VNI SY+ DV+ V++ S++ + ++ ++ A+R +ISV+ Sbjct: 118 LVSHRAITVNGEVVNIASYQVAANDVVAVRESSRKQQRIKDSLEIAAQRPDVSWISVDAA 177 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F PS +D P + +LVVE YS+ Sbjct: 178 KMEGVFKSAPS--RD-ELPAEINESLVVELYSK 207 >gi|54020253|ref|YP_116101.1| 30S ribosomal protein S4 [Mycoplasma hyopneumoniae 232] gi|71893926|ref|YP_279372.1| 30S ribosomal protein S4 [Mycoplasma hyopneumoniae J] gi|72080904|ref|YP_287962.1| 30S ribosomal protein S4 [Mycoplasma hyopneumoniae 7448] gi|61215435|sp|Q5ZZW4|RS4_MYCH2 RecName: Full=30S ribosomal protein S4 gi|90101694|sp|Q4A7F0|RS4_MYCH7 RecName: Full=30S ribosomal protein S4 gi|90101695|sp|Q4A9B0|RS4_MYCHJ RecName: Full=30S ribosomal protein S4 gi|53987426|gb|AAV27627.1| 30s ribosomal protein S4 [Mycoplasma hyopneumoniae 232] gi|71852053|gb|AAZ44661.1| 30S ribosomal protein S4 [Mycoplasma hyopneumoniae J] gi|71914028|gb|AAZ53939.1| 30S ribosomal protein S4 [Mycoplasma hyopneumoniae 7448] gi|312601523|gb|ADQ90778.1| 30S ribosomal protein S4 [Mycoplasma hyopneumoniae 168] Length = 205 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 123/217 (56%), Gaps = 23/217 (10%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ S + RR+G ++ G+ + R Y PGLHG RR SKPS +G+ LR KQK+ Sbjct: 1 MSRYTGSIFRKSRRLGFSILETGKEFAKGKQRRYAPGLHGLRR-SKPSDYGVHLREKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SEK+FR+ +++A + G + LESRLD VYRA F T ARQ VNH Sbjct: 60 RFMYG-LSEKQFRNTYRKATKKTGIAGTLFLQALESRLDNSVYRAGFAETRRQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVK-------QKSKQLASVLEASQLAERDVPEYISVN 171 H LVN + V+I S++ K+GD+ E+ +K++Q+ + LE R ++ V+ Sbjct: 119 GHFLVNNKKVDIPSFQLKQGDIFELTTRKDGKIRKNQQILTSLET-----RTPAAWLEVD 173 Query: 172 HDNMVATFVRIP--SSLKDVPYPVIMQPNLVVEFYSR 206 DN F R+P S L ++ +L+VEFYS+ Sbjct: 174 KDNFKVVFNRMPERSELNQE-----IKESLIVEFYSK 205 >gi|227877293|ref|ZP_03995366.1| ribosomal protein S4 [Lactobacillus crispatus JV-V01] gi|227863149|gb|EEJ70595.1| ribosomal protein S4 [Lactobacillus crispatus JV-V01] Length = 221 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG + + S +G QL KQK++ Sbjct: 19 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 77 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 78 MYG-LNERQFRTLFTRAGKIREGQHGVNFMILLERRLDSLVYRLGLATTREQARQLVNHG 136 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + M T Sbjct: 137 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALE-AVTARPSFVSFDENKMEGTL 195 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I + LVVE+Y++ Sbjct: 196 VRLPE--RDEMEPEIDEA-LVVEWYNK 219 >gi|296313389|ref|ZP_06863330.1| ribosomal protein S4 [Neisseria polysaccharea ATCC 43768] gi|296840099|gb|EFH24037.1| ribosomal protein S4 [Neisseria polysaccharea ATCC 43768] Length = 206 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIAVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|150003363|ref|YP_001298107.1| 30S ribosomal protein S4 [Bacteroides vulgatus ATCC 8482] gi|212695280|ref|ZP_03303408.1| hypothetical protein BACDOR_04820 [Bacteroides dorei DSM 17855] gi|237711700|ref|ZP_04542181.1| 30S ribosomal protein S4 [Bacteroides sp. 9_1_42FAA] gi|237725859|ref|ZP_04556340.1| 30S ribosomal protein S4 [Bacteroides sp. D4] gi|265753119|ref|ZP_06088688.1| 30S ribosomal protein S4 [Bacteroides sp. 3_1_33FAA] gi|294777845|ref|ZP_06743289.1| ribosomal protein S4 [Bacteroides vulgatus PC510] gi|172048640|sp|A6KYH1|RS4_BACV8 RecName: Full=30S ribosomal protein S4 gi|149931787|gb|ABR38485.1| 30S ribosomal protein S4 [Bacteroides vulgatus ATCC 8482] gi|212662190|gb|EEB22764.1| hypothetical protein BACDOR_04820 [Bacteroides dorei DSM 17855] gi|229435667|gb|EEO45744.1| 30S ribosomal protein S4 [Bacteroides dorei 5_1_36/D4] gi|229454395|gb|EEO60116.1| 30S ribosomal protein S4 [Bacteroides sp. 9_1_42FAA] gi|263236305|gb|EEZ21800.1| 30S ribosomal protein S4 [Bacteroides sp. 3_1_33FAA] gi|294448299|gb|EFG16855.1| ribosomal protein S4 [Bacteroides vulgatus PC510] Length = 201 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A + G T L+ LE+RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASANGITGEILLQSLEARLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + V+G+ VNI S+ K G ++ V+++SK L + A+ LA + +Y + + + V Sbjct: 119 ITVDGKVVNIPSFSVKPGQIVGVRERSKSLEVI--ANSLAGFNHSKYPWLEWDESSKVGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 LLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|254495736|ref|ZP_05108651.1| 30S ribosomal protein S4 [Legionella drancourtii LLAP12] gi|254355049|gb|EET13669.1| 30S ribosomal protein S4 [Legionella drancourtii LLAP12] Length = 206 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + KS + PG HG + K + + +G+QLR K Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKL-PGQHGDK-KPRLNGYGIQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR +K A R +G T NL++ LE RLD +VYR F T ARQ Sbjct: 59 QKIRRLYG-VLEKQFRGYYKMAARMKGSTGENLMTLLEKRLDNVVYRMGFASTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDN 174 V H+ +LVN + VN+ S+ GDV+ V+QK+K + A L+E+ P ++I+V+ + Sbjct: 118 VTHKAILVNDKVVNVPSFLVSPGDVVTVRQKAKSQGRIQAALALSEQRAPCDWITVDSSS 177 Query: 175 MVATFVRIPSSLKDVP--YPVIMQPNLVVEFYSR 206 TF P +L D+ Y V NLVVE YS+ Sbjct: 178 FKGTFSTAP-TLTDLSSDYNV----NLVVELYSK 206 >gi|318040406|ref|ZP_07972362.1| 30S ribosomal protein S4 [Synechococcus sp. CB0101] Length = 202 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 123/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKSAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SY+CK GDV+ ++++ SK+LA LE LA ++P ++ ++ + + A Sbjct: 117 VTVNGRVVDIPSYQCKAGDVVAIRERKQSKKLAEGNLEFPGLA--NIPPHLELDKNKLTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + S + + + LVVEFYSR Sbjct: 175 KVI---SKCEREWVALEINELLVVEFYSR 200 >gi|114330597|ref|YP_746819.1| 30S ribosomal protein S4 [Nitrosomonas eutropha C91] gi|122314409|sp|Q0AIH2|RS4_NITEC RecName: Full=30S ribosomal protein S4 gi|114307611|gb|ABI58854.1| SSU ribosomal protein S4P [Nitrosomonas eutropha C91] Length = 208 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K + RR GE L+ + K P+ R+Y PG HGQR K++ S + +QLR Sbjct: 1 MARNINPKCRQCRREGEKLFLKGDKCFSDKCPIERRNYPPGQHGQR-KTRLSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR+++K ADR +G T NL+ LESRLD + Y F + ARQ Sbjct: 60 KQKIRRIYG-LLENQFRNVYKRADRQKGITGENLLKLLESRLDNVAYNMGFGASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 + H +L+NG+ NI S GD IEV + +K + + +LA+ R +P ++ V+ D Sbjct: 119 IIRHDCILLNGKKANIPSQLIGPGDQIEVAEHAKSYLRIKSSIELAKRRSIPSWLEVDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + P D+ + +LVVE YS+ Sbjct: 179 NLKGLYKNKPDR-SDLSSTI--NESLVVELYSK 208 >gi|330976664|gb|EGH76707.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 206 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L+ + +S N + PG+HGQRR + S +G QLR K Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEA-APGIHGQRR-GRQSDYGTQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F +K+A +G T NL+ LE RLD +VYR F T +RQ Sbjct: 59 QKVRRIYG-VLERQFSGYYKKAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+H+ V VNG++VN+ SY+ + GDV+ +++K+K +++A L A+R E++ V+ + Sbjct: 118 VSHKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEK 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ D+ + +L+VE YS+ Sbjct: 178 KSGVFKNVPAR-SDLSADI--NESLIVELYSK 206 >gi|78043798|ref|YP_361091.1| 30S ribosomal protein S4 [Carboxydothermus hydrogenoformans Z-2901] gi|90101680|sp|Q3A9U3|RS4_CARHZ RecName: Full=30S ribosomal protein S4 gi|77995913|gb|ABB14812.1| ribosomal protein S4 [Carboxydothermus hydrogenoformans Z-2901] Length = 208 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/184 (41%), Positives = 104/184 (56%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+Y PG HG RK KP+ + LQLR KQK K+ YG + E +FR F+ A+R G Sbjct: 30 KCAIARRNYAPGQHGHTRK-KPTEYALQLREKQKAKRIYG-VLEAQFRRYFEMAERQPGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR + ARQ V H VNGR VNI SY K GDVI + Sbjct: 88 TGENLLVILERRLDNVVYRLGLAESRAQARQLVRHNFFTVNGRKVNIPSYLVKVGDVIAL 147 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K++ K E + A + +P ++S + +N V +P +D+ PV + +L+VE Sbjct: 148 KEEKKDSPIAKEIMERAASKTLPAWLSYDANNAVGKVEALPKR-EDIDIPV--EEHLIVE 204 Query: 203 FYSR 206 YSR Sbjct: 205 LYSR 208 >gi|238916291|ref|YP_002929808.1| small subunit ribosomal protein S4 [Eubacterium eligens ATCC 27750] gi|259495278|sp|C4Z2V6|RS4_EUBE2 RecName: Full=30S ribosomal protein S4 gi|238871651|gb|ACR71361.1| small subunit ribosomal protein S4 [Eubacterium eligens ATCC 27750] Length = 197 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/167 (44%), Positives = 105/167 (62%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +G+QLR KQK K YG + EK FR+ +K+A+R +G T NL+ LE RLD +++R Sbjct: 38 KVSEYGMQLREKQKAKFIYG-VLEKPFRNYYKKAERQKGMTGENLMIMLELRLDNVLFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLEASQLA 160 F T ARQ V+H+HVLVNG+ VNI SY K GDVIE+++KSK A +LE++ Sbjct: 97 GFARTRKEARQIVDHKHVLVNGKCVNIPSYLVKAGDVIEIREKSKSSARYKEILESTN-- 154 Query: 161 ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 R VPE++ + D + + IP+ + DVP + L+VE YS+ Sbjct: 155 GRLVPEWLEADADALKGSVKSIPTREVIDVP----VNEMLIVELYSK 197 >gi|124514417|gb|EAY55930.1| ribosomal protein S4 [Leptospirillum rubarum] gi|206602702|gb|EDZ39183.1| Ribosomal protein S4 [Leptospirillum sp. Group II '5-way CG'] Length = 209 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 7/185 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ RSY PG HGQ R +K S +GLQLR KQK+K+ +G + EK+FR+ F+ A R +G Sbjct: 30 KCAIDRRSYPPGQHGQSR-AKISDYGLQLREKQKVKRIFG-VLEKQFRNAFERASRKKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T +L+S LE RLD++VYR + AR V H H+ VNGR VNI S++CK DVI + Sbjct: 88 TGESLLSGLELRLDSVVYRMGLGTSRNEARMLVTHGHLEVNGRKVNIPSFQCKVSDVISL 147 Query: 144 KQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 + KS+ E + AE +P ++ V + A P K +++ NL+V Sbjct: 148 RTKSRSNERFKENLRDAETRGVIPSWLDVQKEQFSAVVREQP---KREEINILISENLIV 204 Query: 202 EFYSR 206 E YSR Sbjct: 205 ELYSR 209 >gi|210623214|ref|ZP_03293653.1| hypothetical protein CLOHIR_01603 [Clostridium hiranonis DSM 13275] gi|210153751|gb|EEA84757.1| hypothetical protein CLOHIR_01603 [Clostridium hiranonis DSM 13275] Length = 207 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 5/183 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ R+Y PG HGQ RK K S +G QLR KQK+K+ YG + E +FR++++ A++ G Sbjct: 30 KCALDRRNYAPGQHGQGRK-KVSNYGEQLREKQKVKRIYG-VLETQFRNLYERAEKMPGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+S LE RLD +VYR + ARQ V H H +NG+ V+I S GDVI V Sbjct: 88 TGANLLSLLERRLDNVVYRMGLAASRKEARQLVTHAHFTLNGKKVDIPSLTVNVGDVIAV 147 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K+ SK A + R P ++ N D M A V +P+ +D+ + +L++E Sbjct: 148 KETSKSSAKFKALVENNTRIAPNWLENNLDEMCAKVVSLPTR-EDIDLEI--AEHLIIEL 204 Query: 204 YSR 206 YS+ Sbjct: 205 YSK 207 >gi|283458017|ref|YP_003362625.1| 30S ribosomal protein S4 [Rothia mucilaginosa DY-18] gi|283134040|dbj|BAI64805.1| ribosomal protein S4 [Rothia mucilaginosa DY-18] Length = 210 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/198 (37%), Positives = 109/198 (55%), Gaps = 8/198 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R +G L + + + R YGPG HG+ RK S + QL+ KQ+++ Y +I E + R Sbjct: 15 RALGIALTPKAEKYLERRPYGPGQHGRARKKADSNYATQLKEKQRLRAQY-NIREAQMRR 73 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA R+ G T N++ LE+RLD +V RA F TI ARQ V HRH++V+G V+ S Sbjct: 74 AYLEAKRTEGQTGKNMVELLETRLDALVLRAGFARTIAQARQMVVHRHIMVDGVRVDRPS 133 Query: 133 YRCKEGDVIEVKQKSKQLASVLEAS----QLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 + K G +I V K+++ A A+ Q +VP Y++V + + A R P K Sbjct: 134 FHVKPGQLIHVHPKAEKTAPFQAAAAGEHQAVLPEVPAYLNVEIEKLHAKLERKP---KR 190 Query: 189 VPYPVIMQPNLVVEFYSR 206 PVI LVVE+YSR Sbjct: 191 EEIPVICDEQLVVEYYSR 208 >gi|104773806|ref|YP_618786.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983978|sp|Q1GAV4|RS4_LACDA RecName: Full=30S ribosomal protein S4 gi|152060954|sp|Q04B92|RS4_LACDB RecName: Full=30S ribosomal protein S4 gi|103422887|emb|CAI97549.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125470|gb|ADY84800.1| 30s ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 203 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +G+QL+ KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYIPGQHGPNHRGRLSEYGMQLQEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LNERQFRTLFARAGKIREGQHGTNFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+ V+G+ V+I SY K G I +K+KSK L V +A + +A R P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALEAVASR--PSFVSFDEDKMEGQ 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P +D P I + LVVE+Y++ Sbjct: 177 LVRFPE--RDEMEPEIDEA-LVVEYYNK 201 >gi|325684425|gb|EGD26593.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 203 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYVPGQHGPNHRGRLSEYGLQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G +SE++FR++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LSERQFRTLFVRAGKIREGQHGINFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+ V+G+ V+I SY K G I +K+KSK L V +A + +A R P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALEAVASR--PSFVSFDEDKMEGQ 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P +D P I + LVVE+Y++ Sbjct: 177 LVRFPE--RDEMEPEIDEA-LVVEYYNK 201 >gi|281423813|ref|ZP_06254726.1| ribosomal protein S4 [Prevotella oris F0302] gi|281402040|gb|EFB32871.1| ribosomal protein S4 [Prevotella oris F0302] Length = 201 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + V+G+ VNI S+ K G VI V++KSK L V+EA+ LA + +Y I + ++ Sbjct: 119 ITVDGKVVNIPSFAVKPGMVIAVREKSKSL-EVIEAA-LAGFNHSKYPWIEWDDNSKCGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|88799195|ref|ZP_01114775.1| ribosomal protein S4 [Reinekea sp. MED297] gi|88778178|gb|EAR09373.1| ribosomal protein S4 [Reinekea sp. MED297] Length = 206 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HG RR + S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCKLETV---PGVHGARR-GRLSDYGIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R++G T L+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKEAARTKGATGEVLLQLLERRLDNVVYRMGFGVTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNH 172 Q V+H+ +LVNG+SVNI S++ K GDV+ V++KS + A +A P ++ V+ Sbjct: 116 QLVSHKAILVNGQSVNIPSFQVKPGDVVSVREKSANQLRIKSAVDVAATRAPVSWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P D+ + NL+VE YS+ Sbjct: 176 KKLEGKFSAVPER-SDLSQDI--NENLIVELYSK 206 >gi|52840598|ref|YP_094397.1| 30S ribosomal protein S4 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54293345|ref|YP_125760.1| 30S ribosomal protein S4 [Legionella pneumophila str. Lens] gi|148361031|ref|YP_001252238.1| 30S ribosomal protein S4 [Legionella pneumophila str. Corby] gi|296105901|ref|YP_003617601.1| small subunit ribosomal protein S4 [Legionella pneumophila 2300/99 Alcoy] gi|61215402|sp|Q5WZI8|RS4_LEGPL RecName: Full=30S ribosomal protein S4 gi|61215429|sp|Q5ZYL9|RS4_LEGPH RecName: Full=30S ribosomal protein S4 gi|172047874|sp|A5IHP2|RS4_LEGPC RecName: Full=30S ribosomal protein S4 gi|52627709|gb|AAU26450.1| 30S ribosomal protein S4 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53753177|emb|CAH14624.1| 30S ribosomal subunit protein S4 [Legionella pneumophila str. Lens] gi|148282804|gb|ABQ56892.1| 30S ribosomal protein S4 [Legionella pneumophila str. Corby] gi|295647802|gb|ADG23649.1| small subunit ribosomal protein S4 [Legionella pneumophila 2300/99 Alcoy] gi|307609161|emb|CBW98617.1| 30S ribosomal subunit protein S4 [Legionella pneumophila 130b] Length = 206 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + KS + PG HG ++ SY G+QLR K Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKL-PGQHGDKKPRLNSY-GIQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG I EK+FR+ +K+A R +G T NL++ LE RLD +VYR F T ARQ Sbjct: 59 QKIRRLYG-ILEKQFRNYYKKAARQKGSTGENLMALLERRLDNVVYRMGFASTRAEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDN 174 V H+ +LVN + VN+ S+ GD + V+QK+K + A L+E+ P ++I+V+ + Sbjct: 118 VAHKAILVNDKVVNVPSFLVNPGDTVSVRQKAKNQGRIQAALALSEQRAPCDWITVDTGS 177 Query: 175 MVATFVRIPSSLKDVP--YPVIMQPNLVVEFYSR 206 TF P +L D+ Y V NLVVE YS+ Sbjct: 178 FKGTFSTAP-TLMDLSSDYNV----NLVVELYSK 206 >gi|288942048|ref|YP_003444288.1| 30S ribosomal protein S4 [Allochromatium vinosum DSM 180] gi|288897420|gb|ADC63256.1| ribosomal protein S4 [Allochromatium vinosum DSM 180] Length = 206 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG RR+ + S +G+QLR KQK+++ YG + E++FR+ +K+A +S+G T NL+ LE Sbjct: 38 PGQTTDRRR-RLSDYGVQLREKQKVRRIYG-VLERQFRNYYKKAAQSKGATGENLLQILE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR F T ARQ V+H+ +LVNGR VNI SY+ D +EV++ +K+ V Sbjct: 96 RRLDNVVYRMGFGATRAEARQLVSHKGILVNGRIVNIASYQVNADDHVEVREAAKKQVRV 155 Query: 154 LEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A LAE+ P+++ V+ + F RIP D+P + +L+VE YS+ Sbjct: 156 QNAMALAEQYGFPDWVEVDSKGLKGVFKRIPDR-SDLPADI--NESLIVELYSK 206 >gi|134302562|ref|YP_001122532.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis WY96-3418] gi|152060949|sp|A4IZR0|RS4_FRATW RecName: Full=30S ribosomal protein S4 gi|134050339|gb|ABO47410.1| ribosomal protein S4 [Francisella tularensis subsp. tularensis WY96-3418] Length = 206 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR----SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG RR ++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHGARR-ARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA+ R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKAGDVVTVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + SS + L++E YS+ Sbjct: 179 EGT---MKSSPDRSELSADINEQLIIELYSK 206 >gi|56707502|ref|YP_169398.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89255694|ref|YP_513055.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica LVS] gi|110669973|ref|YP_666530.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC198] gi|118496876|ref|YP_897926.1| 30S ribosomal protein S4 [Francisella tularensis subsp. novicida U112] gi|156501642|ref|YP_001427707.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010989|ref|ZP_02275920.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica FSC200] gi|194324098|ref|ZP_03057872.1| ribosomal protein S4 [Francisella tularensis subsp. novicida FTE] gi|208780324|ref|ZP_03247665.1| ribosomal protein S4 [Francisella novicida FTG] gi|224456565|ref|ZP_03665038.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis MA00-2987] gi|254367075|ref|ZP_04983110.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica 257] gi|254368645|ref|ZP_04984660.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica FSC022] gi|254370809|ref|ZP_04986814.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC033] gi|254372233|ref|ZP_04987724.1| 30S ribosomal protein S4 [Francisella tularensis subsp. novicida GA99-3549] gi|254373715|ref|ZP_04989198.1| 30S ribosomal protein S4 [Francisella novicida GA99-3548] gi|254874322|ref|ZP_05247032.1| 30S ribosomal protein S4 rpsD [Francisella tularensis subsp. tularensis MA00-2987] gi|290953189|ref|ZP_06557810.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica URFT1] gi|295313557|ref|ZP_06804146.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica URFT1] gi|61215374|sp|Q5NHU4|RS4_FRATT RecName: Full=30S ribosomal protein S4 gi|122501251|sp|Q2A5E6|RS4_FRATH RecName: Full=30S ribosomal protein S4 gi|123359595|sp|Q14J96|RS4_FRAT1 RecName: Full=30S ribosomal protein S4 gi|152060948|sp|A0Q4K7|RS4_FRATN RecName: Full=30S ribosomal protein S4 gi|171769925|sp|A7N9U8|RS4_FRATF RecName: Full=30S ribosomal protein S4 gi|54113157|gb|AAV29212.1| NT02FT0049 [synthetic construct] gi|56603994|emb|CAG44982.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89143525|emb|CAJ78701.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica LVS] gi|110320306|emb|CAL08365.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC198] gi|118422782|gb|ABK89172.1| 30S ribosomal protein S4 [Francisella novicida U112] gi|134252900|gb|EBA51994.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica 257] gi|151569052|gb|EDN34706.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC033] gi|151569962|gb|EDN35616.1| 30S ribosomal protein S4 [Francisella novicida GA99-3549] gi|151571436|gb|EDN37090.1| 30S ribosomal protein S4 [Francisella novicida GA99-3548] gi|156252245|gb|ABU60751.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121553|gb|EDO65738.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica FSC022] gi|194321545|gb|EDX19029.1| ribosomal protein S4 [Francisella tularensis subsp. novicida FTE] gi|208743692|gb|EDZ89995.1| ribosomal protein S4 [Francisella novicida FTG] gi|254840321|gb|EET18757.1| 30S ribosomal protein S4 rpsD [Francisella tularensis subsp. tularensis MA00-2987] gi|282158646|gb|ADA78037.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis NE061598] gi|328675431|gb|AEB28106.1| SSU ribosomal protein S4p (S9e) [Francisella cf. novicida 3523] gi|328676345|gb|AEB27215.1| SSU ribosomal protein S4p (S9e) [Francisella cf. novicida Fx1] Length = 206 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR----SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG RR ++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHGARR-ARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA+ R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + SS + L++E YS+ Sbjct: 179 EGT---MKSSPDRSELSADINEQLIIELYSK 206 >gi|206900118|ref|YP_002250727.1| ribosomal protein S4 [Dictyoglomus thermophilum H-6-12] gi|226732178|sp|B5YDW9|RS4_DICT6 RecName: Full=30S ribosomal protein S4 gi|206739221|gb|ACI18279.1| ribosomal protein S4 [Dictyoglomus thermophilum H-6-12] Length = 206 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 109/184 (59%), Gaps = 8/184 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P R + PG HG R + K + +GL+LR KQ+ K+ YG + E++FR F+ A + RG Sbjct: 30 KCPFERRPFAPGQHG-RAQRKLTEYGLRLREKQRAKRIYG-VLERQFRRYFEIASKGRGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE+RLD +VYR + + ARQ V+H + VNG+ VNI SY K GDV+E+ Sbjct: 88 TGERLLQLLETRLDNVVYRLGWALSRDQARQLVSHGKIAVNGKRVNIPSYNLKPGDVVEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K L V EA S ++VP ++ ++ +N +R+P +++ PV Q L+VE Sbjct: 148 --LDKDLIPVQEAISVFGNKNVPAWLELDRENFRGRVLRLPKR-EEIDTPV--QEQLIVE 202 Query: 203 FYSR 206 FYSR Sbjct: 203 FYSR 206 >gi|302337501|ref|YP_003802707.1| ribosomal protein S4 [Spirochaeta smaragdinae DSM 11293] gi|301634686|gb|ADK80113.1| ribosomal protein S4 [Spirochaeta smaragdinae DSM 11293] Length = 211 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 3/184 (1%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ + PG + R K S +G+QLR KQK+++ YG + EK+F+ F EA+R RG Sbjct: 30 KCPIAKKKNPPGKGPRFRARKMSDYGIQLREKQKLRRMYG-LLEKQFKLTFVEAERLRGK 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NLI LE RLD +VYR +F + ARQ V+H H+LVNG+ V I SY ++GD IE+ Sbjct: 89 TGENLIILLERRLDNVVYRLRFANSRKQARQLVSHGHILVNGKRVTIPSYVVRQGDEIEI 148 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++ SK++ + +A + + V +I ++ D M + IP DV + L+VE Sbjct: 149 REASKKMVVIKDALKEYTKSGVMPWIMLDPDAMKGSLSAIPRR-NDVTDLSDVNEQLIVE 207 Query: 203 FYSR 206 YSR Sbjct: 208 LYSR 211 >gi|270291002|ref|ZP_06197225.1| 30S ribosomal protein S4 [Pediococcus acidilactici 7_4] gi|304385274|ref|ZP_07367619.1| 30S ribosomal protein S4 [Pediococcus acidilactici DSM 20284] gi|270280398|gb|EFA26233.1| 30S ribosomal protein S4 [Pediococcus acidilactici 7_4] gi|304328481|gb|EFL95702.1| 30S ribosomal protein S4 [Pediococcus acidilactici DSM 20284] Length = 202 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HGQ + K S +G+QLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYAPGDHGQNNRRKISEYGMQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFANLFDRASKMREGVPGTNFMILLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KSK L + EA + A P+++ + D + + Sbjct: 119 HITVDGKRVDIPSYEVEIGQVIGVREKSKDLKIINEAVE-AVVGRPQFVQFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D + +L+VE+Y++ Sbjct: 178 VRLPE--RD-ELEAEIDDSLIVEYYNK 201 >gi|7524902|ref|NP_045904.1| ribosomal protein S4 [Chlorella vulgaris] gi|417720|sp|P32975|RR4_CHLVU RecName: Full=30S ribosomal protein S4, chloroplastic gi|285704|dbj|BAA01767.1| ribosomal protein S4 ['Chlorella' ellipsoidea] gi|2224496|dbj|BAA57980.1| 30S ribosomal protein S4 [Chlorella vulgaris] Length = 207 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 121/215 (56%), Gaps = 19/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK------SKPSYFGLQLRA 54 M++ K +I RR+GE L G + TR + PG HG ++K +K S + ++L+ Sbjct: 1 MARYRGPKLRIVRRLGE-LPGLTQKNC-TRDFPPGQHGPKKKGGGNQKTKESQYAVRLKE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ YG ISE++ S +EA + +G T L+ LE RLDTI++R F PTI AARQ Sbjct: 59 KQKLRFNYG-ISERQLMSYVREARKRKGSTGEILLQILEMRLDTIIFRLGFAPTIAAARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 +NH H++VNGR V+I S CK D I V S+ L S D P Y+ VN + Sbjct: 118 LINHGHIVVNGRRVDIPSSLCKVNDSISVALNSQNFVKNLLQSFTKTLDAP-YLEVNQEK 176 Query: 175 MVATFVRIPSSLKDVPYPVI-MQPN--LVVEFYSR 206 + A VR ++P + +Q N LVVEFYSR Sbjct: 177 LSAV-VR-----DNIPREAVSLQINELLVVEFYSR 205 >gi|294792833|ref|ZP_06757980.1| ribosomal protein S4 [Veillonella sp. 6_1_27] gi|294794587|ref|ZP_06759723.1| ribosomal protein S4 [Veillonella sp. 3_1_44] gi|294454917|gb|EFG23290.1| ribosomal protein S4 [Veillonella sp. 3_1_44] gi|294456732|gb|EFG25095.1| ribosomal protein S4 [Veillonella sp. 6_1_27] Length = 195 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ K+ RR G N++G K+ + +R+ K S +G QL KQK+K Sbjct: 1 MATRREARFKLCRRFGVNVFGHAKALNRVKK-------DQRQKKMSEYGTQLLEKQKVKA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ++ E++F + +A + +G T N++ LE RLD +VYR F +I ARQ VNH H Sbjct: 54 YY-NLLERQFVRYYDKAKKMQGVTGQNMLILLEQRLDNLVYRIGFGNSIRQARQMVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I S+ CK GDVIE+++ S+ +L ++P YI + D ATF Sbjct: 113 ILVNGRRVDIPSFSCKPGDVIELREASRDNEMFKTNFQELRSFELP-YIEKDLDGFKATF 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + L+VE YS+ Sbjct: 172 TRLPQREE---LPIEVNETLIVELYSK 195 >gi|187776603|ref|ZP_02993076.1| hypothetical protein CLOSPO_00117 [Clostridium sporogenes ATCC 15579] gi|187775262|gb|EDU39064.1| hypothetical protein CLOSPO_00117 [Clostridium sporogenes ATCC 15579] Length = 206 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 117/214 (54%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGATCRLCRREGLKLFLKGDRCYTDKCAFARRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR ++EADR RG T NL+ LE RLD +V+R + + ARQ Sbjct: 60 KQKAKRIYG-ILERQFRGYYEEADRRRGITGENLLRLLEMRLDNVVFRLGYGNSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H L+NG+ V+I SY+ DVI V KSK + + AE + +P ++S N Sbjct: 119 LVTHGHFLINGKKVDIPSYQVSANDVITVCDKSK---ATEKFKTFAENPKTLPAWLSGNV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R P+ +D+ PV L+VE YS+ Sbjct: 176 EGFEGKVERQPAR-EDIDVPV--NETLIVELYSK 206 >gi|108758664|ref|YP_631524.1| 30S ribosomal protein S4 [Myxococcus xanthus DK 1622] gi|122981072|sp|Q1D749|RS4A_MYXXD RecName: Full=30S ribosomal protein S4 A gi|108462544|gb|ABF87729.1| ribosomal protein S4 [Myxococcus xanthus DK 1622] Length = 208 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 108/184 (58%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQ R K S +G+QLR KQK+K+ YG + E +FR + A ++G Sbjct: 30 KCAIERRPYPPGQHGQGR-VKFSGYGVQLREKQKVKRMYG-LLENQFRGYYHRASAAKGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +V+R F T ARQ V H H VNGR VNI S+ K G +EV Sbjct: 88 TGDNLLQQLELRLDNVVFRMGFADTRNEARQLVRHGHFQVNGRKVNIPSFAVKPGTAVEV 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 +KS+++ + EA + + R +P++IS++ T +P+ +D+ P+ Q L+VE Sbjct: 148 VEKSRKVLRISEALETVDRRGIPQWISLDKKAFKGTVTTVPNR-EDLTMPISEQ--LIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|71901055|ref|ZP_00683165.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] gi|71729182|gb|EAO31303.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] Length = 208 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 6/175 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG RKSK S + QLR KQK+K+ YG + E++FR+ +K A +G+T NL+ LE Sbjct: 38 PGQHGAVRKSKLSDYASQLREKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLE 96 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +RLD ++YR F T AARQ V+HR VLVNG+ VN+ SY K GDV+ + Q++++ V Sbjct: 97 TRLDNVIYRMGFAVTRPAARQLVSHRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKYLCV 156 Query: 154 LEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E+ + ++ +I V+ + F +P D+P + L+VE YS+ Sbjct: 157 QESLTIKDQYGSAFSWIEVDSEKFSGVFKALPDR-ADLPSDI--NEALIVELYSK 208 >gi|254516934|ref|ZP_05128992.1| ribosomal protein S4 [gamma proteobacterium NOR5-3] gi|219674439|gb|EED30807.1| ribosomal protein S4 [gamma proteobacterium NOR5-3] Length = 154 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 5/158 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +QLR KQK+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T Sbjct: 1 MQLREKQKVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRIGFGSTR 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYI 168 +RQ V H+ +LVNG+ VNI SY+ K GDV+ +++K+K+ V A L A+R PE+I Sbjct: 60 SESRQLVAHKAILVNGKVVNIASYKVKAGDVVSLREKAKKQLRVQSAMALAAQRGEPEWI 119 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N + + A + P +D+ + NL+VE YS+ Sbjct: 120 DINVEKLEAVYKAAPDR-QDLSSDI--NENLIVELYSK 154 >gi|268609565|ref|ZP_06143292.1| small subunit ribosomal protein S4 [Ruminococcus flavefaciens FD-1] Length = 199 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 9/168 (5%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 + K S +GLQL+ KQK+K YG + EK+FR F A++ G NLI+ LESRLD++VY Sbjct: 38 RKKISEYGLQLKEKQKLKFIYG-VLEKQFRHYFAIAEKMEGKAGDNLITVLESRLDSVVY 96 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLEASQ 158 R T ARQ V H H VNG+ VNI SYR K GDVI +K+K S++ + +E ++ Sbjct: 97 RMGLALTRREARQLVVHSHYTVNGKKVNIPSYRVKVGDVIALKEKDRTSEKFKATVEETK 156 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R VP +++ N D+ AT R+PS+ +D+ Y V +L+VE YS+ Sbjct: 157 --DRLVPVWLTANKDDFSATVNRLPSA-EDIDYEV--ATHLIVELYSK 199 >gi|240145850|ref|ZP_04744451.1| ribosomal protein S4 [Roseburia intestinalis L1-82] gi|257201998|gb|EEV00283.1| ribosomal protein S4 [Roseburia intestinalis L1-82] gi|291535455|emb|CBL08567.1| SSU ribosomal protein S4P [Roseburia intestinalis M50/1] gi|291537904|emb|CBL11015.1| SSU ribosomal protein S4P [Roseburia intestinalis XB6B4] Length = 197 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK F + +++AD+ +G T NL++ LESRLD Sbjct: 33 KRANKKVSEYGLQLREKQKAKFIYG-VLEKPFHNYYEKADQMKGMTGTNLMTMLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R F T ARQ V+H+ +LVNG+ VNI SY K GDVIE+K+K+K L + + + Sbjct: 92 VVFRMGFARTRKEARQIVDHKFILVNGKQVNIPSYLVKAGDVIEIKEKNKGLQRMKDIVE 151 Query: 159 L-AERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + R VPE++ V+ + + T +PS + DVP + L+VE YS+ Sbjct: 152 VTGGRLVPEWLDVDAEKLQGTVKELPSREQIDVP----VDEMLIVELYSK 197 >gi|297562093|ref|YP_003681067.1| ribosomal protein S4 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846541|gb|ADH68561.1| ribosomal protein S4 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 203 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 118/201 (58%), Gaps = 6/201 (2%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ RR G L + S R Y PG HG+R + S + ++ KQK++ YY D++E Sbjct: 7 KVRLSRRAGTPLTRKAVSYFEKRPYPPGEHGRRVRRNSSDYAVRQAEKQKVRWYY-DLTE 65 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ +++ A + G T +++ LE RL T+V RA +I+AARQFVNH H+ V+G+ Sbjct: 66 KQMLRVYESAKKRTGRTGEEMLAELELRLATVVLRAGLAASIYAARQFVNHGHITVDGKK 125 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIPSS 185 V+I SY+ K G +I V++KS+ + +EA++ D + +++V+H ++ V P Sbjct: 126 VDIPSYQVKPGQIISVREKSRNMVPFVEAAEGVHADDKIAGFLAVSHKDLRVAVVDRPKR 185 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + +P P Q LVVEFY+R Sbjct: 186 -EQIPVPFDEQ--LVVEFYAR 203 >gi|28198376|ref|NP_778690.1| 30S ribosomal protein S4 [Xylella fastidiosa Temecula1] gi|182681017|ref|YP_001829177.1| 30S ribosomal protein S4 [Xylella fastidiosa M23] gi|32129992|sp|Q87E60|RS4_XYLFT RecName: Full=30S ribosomal protein S4 gi|226703311|sp|B2I8J2|RS4_XYLF2 RecName: Full=30S ribosomal protein S4 gi|28056446|gb|AAO28339.1| 30S ribosomal protein S4 [Xylella fastidiosa Temecula1] gi|182631127|gb|ACB91903.1| ribosomal protein S4 [Xylella fastidiosa M23] Length = 208 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 6/175 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG RKSK S + QLR KQK+K+ YG + E++FR+ +K A +G+T NL+ LE Sbjct: 38 PGQHGAVRKSKLSDYASQLREKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLE 96 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +RLD ++YR F T AARQ V+HR VLVNG+ VN+ SY K GDV+ + Q++++ V Sbjct: 97 TRLDNVIYRMGFAVTRPAARQLVSHRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKYLCV 156 Query: 154 LEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E+ + ++ +I V+ + F +P D+P + L+VE YS+ Sbjct: 157 QESLTIKDQHGSAFSWIEVDSEKFSGVFKALPDR-ADLPSDI--NEALIVELYSK 208 >gi|295109501|emb|CBL23454.1| SSU ribosomal protein S4P [Ruminococcus obeum A2-162] Length = 197 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK F + + +ADR G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFHNYYNKADRMPGQTGENLMVLLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +V+R T ARQ V+H+HVLVNG+ VNI SY K GD IE+K+K K + +LE Sbjct: 92 VVFRMGLARTRREARQIVDHKHVLVNGKCVNIPSYLVKAGDTIEIKEKCKGSERYKGILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIP-SSLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ VN + + T +P + DVP + L+VE YS+ Sbjct: 152 VT--GGRLVPEWLDVNQEALSGTVKELPRREVIDVP----VNEMLIVELYSK 197 >gi|159039806|ref|YP_001539059.1| RNA-binding S4 domain-containing protein [Salinispora arenicola CNS-205] gi|157918641|gb|ABW00069.1| RNA-binding S4 domain protein [Salinispora arenicola CNS-205] Length = 208 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P +R + PG HG+ R + Y LQLR KQK ++ YG + EK+FR ++EA + Sbjct: 29 PKCPFESRPFPPGQHGRGRTKETEYL-LQLREKQKARRVYG-VLEKQFRGYYEEAVAKQA 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA + + ARQ V H H VNGR V+I SYR KE D++E Sbjct: 87 KTGEVLLQILESRLDNVVYRAGYAKSRDMARQLVKHGHFTVNGRKVDIPSYRVKEHDIVE 146 Query: 143 VKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V+ KSK+L L A ++ + VP ++ M +PS + D +Q L+ Sbjct: 147 VRGKSKELTPFLVAQAESGSKSVPAWLEAIPSQMKVLVHSLPSRQVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|148241720|ref|YP_001226877.1| 30S ribosomal protein S4 [Synechococcus sp. RCC307] gi|172047802|sp|A5GRL5|RS4_SYNR3 RecName: Full=30S ribosomal protein S4 gi|147850030|emb|CAK27524.1| 30S ribosomal protein S4 [Synechococcus sp. RCC307] Length = 202 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 121/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ ++ RR+G +L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGARLRVTRRLG-DLPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQGGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SY+CK GDVI +++K SK+LA LE LA ++P ++ + + A Sbjct: 117 VTVNGRVVDIASYQCKAGDVIAIREKKPSKKLAETNLEFPGLA--NIPPHLELEKSKLTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 175 KVV---GKCEREWVALEINELLVVEYYSR 200 >gi|258648133|ref|ZP_05735602.1| ribosomal protein S4 [Prevotella tannerae ATCC 51259] gi|260852014|gb|EEX71883.1| ribosomal protein S4 [Prevotella tannerae ATCC 51259] Length = 202 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 116/208 (55%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSRIARRFGEAIFGADKV-LSRRNFPPGQHGNGRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A S G T L+ LE RLD +VYR PT AARQ VNHRH Sbjct: 60 TYG-VLEKQFRNMFEKASASNGITGEILLQNLECRLDNVVYRLGIAPTRAAARQLVNHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM--VAT 178 + V+G+ I SY K G ++ V++KSK L + A LA + +Y + D Sbjct: 119 ITVDGKVTGIASYSVKPGQIVAVREKSKSLEVI--ADSLAGFNHSKYPWMEWDESAKAGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+P + Q L+VE YS+ Sbjct: 177 LLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|163816004|ref|ZP_02207374.1| hypothetical protein COPEUT_02184 [Coprococcus eutactus ATCC 27759] gi|158448814|gb|EDP25809.1| hypothetical protein COPEUT_02184 [Coprococcus eutactus ATCC 27759] Length = 214 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 11/171 (6%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+++ +A++ +G T NL++ LE RLD I Sbjct: 51 RSNRKQSEYGLQLREKQKAKFIYG-VLEKPFRNLYAKAEQQKGLTGPNLMTLLELRLDNI 109 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLEA 156 ++R F T ARQ V+H+HVLVNG+ VNI SY K GD IE+++KSK L ++ A Sbjct: 110 IFRLGFARTRREARQIVDHKHVLVNGKCVNIPSYSVKPGDKIEIREKSKSLQRYKDIMAA 169 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++ VP +++ + DN+ V PS + DVP + L+VE YS+ Sbjct: 170 TEGVL--VPGWLTADRDNLTGEVVEKPSREQIDVP----VNETLIVELYSK 214 >gi|116493045|ref|YP_804780.1| 30S ribosomal protein S4 [Pediococcus pentosaceus ATCC 25745] gi|122265491|sp|Q03EN4|RS4_PEDPA RecName: Full=30S ribosomal protein S4 gi|116103195|gb|ABJ68338.1| SSU ribosomal protein S4P [Pediococcus pentosaceus ATCC 25745] Length = 202 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HGQ + K S +G+QLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLTGTGKE-LARRPYAPGDHGQNNRRKISEYGMQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFSNLFVRAGKIREGLPGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KSK L + EA + A P+++ + D + + Sbjct: 119 HITVDGKRVDIPSYEVEIGQVIGVREKSKDLKIISEAVE-AVVGRPQFVQFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D + +L+VE+Y++ Sbjct: 178 VRLPQ--RD-ELEADIDDSLIVEYYNK 201 >gi|300172651|ref|YP_003771816.1| 30S ribosomal protein S4 [Leuconostoc gasicomitatum LMG 18811] gi|299887029|emb|CBL90997.1| 30S ribosomal protein S4 [Leuconostoc gasicomitatum LMG 18811] Length = 203 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 122/210 (58%), Gaps = 13/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F S+F +A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFHSLFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV---PEYISVNHDNMV 176 H++V+ + V+I S+ G VI V+ KSK + + Q+A V P+++S + + + Sbjct: 119 HIMVDSKRVDIPSFSVTPGQVISVRDKSKTIVPI----QVAVESVVGHPQFVSFDAEKLE 174 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + + +L+VE+Y+R Sbjct: 175 GSLVRLPEREE---LDADINESLIVEYYNR 201 >gi|194477170|ref|YP_002049349.1| 30S ribosomal protein S4 [Paulinella chromatophora] gi|171192177|gb|ACB43139.1| 30S ribosomal protein S4 [Paulinella chromatophora] Length = 203 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+G +L G + R+Y PG HGQ + K S + ++L KQK++ Sbjct: 1 MARYRGPRLRITRRLG-DLPGLTRKSAK-RAYPPGQHGQVARRKRSEYAIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LESRLD I +R F PT+ ARQ VNH H Sbjct: 59 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLESRLDNICFRLGFGPTVPGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQ--KSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 VLVNGR ++I SY+CK GD+I +++ +S++LA LE LA +VP ++ + + Sbjct: 118 VLVNGRVLDIPSYQCKTGDIISIRESKQSRRLAETNLEFPGLA--NVPPHLEFDKTKLRG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI S ++ + + LVVE+YSR Sbjct: 176 ---RISSRIEREWVALEINELLVVEYYSR 201 >gi|261400076|ref|ZP_05986201.1| ribosomal protein S4 [Neisseria lactamica ATCC 23970] gi|313667465|ref|YP_004047749.1| 30S ribosomal protein S4 [Neisseria lactamica ST-640] gi|269210301|gb|EEZ76756.1| ribosomal protein S4 [Neisseria lactamica ATCC 23970] gi|309379135|emb|CBX22266.1| 30S ribosomal protein S4 [Neisseria lactamica Y92-1009] gi|313004927|emb|CBN86353.1| 30S ribosomal protein S4 [Neisseria lactamica 020-06] Length = 206 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P +++V+ D + Sbjct: 119 SHKAIAVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAIQIGLPSWVAVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|313123420|ref|YP_004033679.1| 30S ribosomal protein s4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279983|gb|ADQ60702.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 203 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYVPGQHGPNHRGRLSEYGMQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G +SE++FR++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LSERQFRTLFVRAGKIREGQHGINFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+ V+G+ V+I SY K G I +K+KSK L V +A + +A R P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALEAVASR--PSFVSFDEDKMEGQ 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P +D P I + LVVE+Y++ Sbjct: 177 LVRFPE--RDEMEPEIDEA-LVVEYYNK 201 >gi|303229707|ref|ZP_07316494.1| ribosomal protein S4 [Veillonella atypica ACS-134-V-Col7a] gi|303231269|ref|ZP_07318007.1| ribosomal protein S4 [Veillonella atypica ACS-049-V-Sch6] gi|302514176|gb|EFL56180.1| ribosomal protein S4 [Veillonella atypica ACS-049-V-Sch6] gi|302515629|gb|EFL57584.1| ribosomal protein S4 [Veillonella atypica ACS-134-V-Col7a] Length = 195 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ K+ RR G N++G K+ + +R+ K S +G QL KQK+K Sbjct: 1 MATRREARFKLCRRFGVNVFGHAKALNRVKK-------DQRQKKMSEYGTQLLEKQKVKA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ++ E++F + +A + +G T N++ LE RLD +VYR F +I ARQ VNH H Sbjct: 54 YY-NLLERQFVRYYDKAKKMQGVTGQNMLILLEQRLDNLVYRIGFGNSIRQARQMVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SY CK GDVIE+++ S+ +L ++P YI + + ATF Sbjct: 113 ILVNGRRVDIPSYSCKPGDVIELREASRDNEMFKTNFQELRSFELP-YIEKDLEGFKATF 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + L+VE YS+ Sbjct: 172 TRLPQREE---LPIEVNETLIVELYSK 195 >gi|28378911|ref|NP_785803.1| 30S ribosomal protein S4 [Lactobacillus plantarum WCFS1] gi|254557116|ref|YP_003063533.1| 30S ribosomal protein S4 [Lactobacillus plantarum JDM1] gi|300769694|ref|ZP_07079577.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181113|ref|YP_003925241.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258326|sp|Q88UX0|RS4_LACPL RecName: Full=30S ribosomal protein S4 gi|28271748|emb|CAD64654.1| ribosomal protein S4 [Lactobacillus plantarum WCFS1] gi|254046043|gb|ACT62836.1| 30S ribosomal protein S4 [Lactobacillus plantarum JDM1] gi|300492737|gb|EFK27922.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046604|gb|ADN99147.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 202 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L G K + R Y PG HGQ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWKISRRLGMSLSGTGKE-LARRPYAPGDHGQGRRGKLSEYGTQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFANLFIKAGKIREGKHGVNFMILLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G V+ V++KSK+LA + A + A P ++ + D + + Sbjct: 119 HITVDGKRVDIPSYEVSVGQVVSVREKSKKLAVITGAVE-AVVARPNFVQFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +L+VE+Y++ Sbjct: 178 TRLPEREE---LEADIDESLIVEYYNK 201 >gi|307297368|ref|ZP_07577174.1| ribosomal protein S4 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916628|gb|EFN47010.1| ribosomal protein S4 [Thermotogales bacterium mesG1.Ag.4.2] Length = 208 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + P+ R PG HG + K + +G+QLR+ Sbjct: 1 MARYTGPVCKLCRREGFKLYLKGERCFSPRCSQVKRPVAPGQHGASTR-KLTQYGMQLRS 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG + E++FR F+ A + +T L+ LESRLD IV+R F + ARQ Sbjct: 60 KQVVKRIYG-VLERQFRRYFEAALKKNEETGTALMKILESRLDNIVFRMGFASSRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 VNH HVLVNGR VN S+ + GD++E+K+KS+ + + EA++ A ER ++ V+++ Sbjct: 119 LVNHGHVLVNGRRVNKPSFNLRVGDIVEIKEKSRSVLPIKEAAEAAKERTAYPWVEVDYE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T++R P + ++V PV +Q ++E YS+ Sbjct: 179 TFRGTYLRYPVT-EEVEIPVDLQS--IIELYSK 208 >gi|217967395|ref|YP_002352901.1| ribosomal protein S4 [Dictyoglomus turgidum DSM 6724] gi|226732179|sp|B8E1F9|RS4_DICTD RecName: Full=30S ribosomal protein S4 gi|217336494|gb|ACK42287.1| ribosomal protein S4 [Dictyoglomus turgidum DSM 6724] Length = 206 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 109/184 (59%), Gaps = 8/184 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P R + PG HG R + K + +GL+LR KQ+ K+ YG + E++FR F+ A + RG Sbjct: 30 KCPFERRPFPPGQHG-RAQRKLTEYGLRLREKQRAKRIYG-VLERQFRRYFEIASKGRGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE+RLD +VYR + + ARQ V+H + VNG+ VNI SY K GDV+E+ Sbjct: 88 TGERLLQLLETRLDNVVYRLGWALSRAQARQIVSHGKIAVNGKRVNIPSYNLKPGDVVEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K L V EA S + VP ++ ++ +N+ +R+P +++ PV Q L+VE Sbjct: 148 --LDKDLIPVQEAISVFGNKSVPAWLELDRENLRGKVLRLPKR-EEIDTPV--QEQLIVE 202 Query: 203 FYSR 206 FYSR Sbjct: 203 FYSR 206 >gi|309789644|ref|ZP_07684225.1| ribosomal protein S4 [Oscillochloris trichoides DG6] gi|308228380|gb|EFO82027.1| ribosomal protein S4 [Oscillochloris trichoides DG6] Length = 238 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K+ RR+G + + + +N RSY PG HG R+ + S +GLQL KQK K Sbjct: 33 MARYNGPVGKVSRRLGIGITEKGQRILNKRSYPPGQHGPNARRRQVSDYGLQLLEKQKAK 92 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR IF++A R G T L+S LE RLD +VYR T ARQ V H Sbjct: 93 FIYG-VLERQFRRIFEQAARRSGVTGEYLLSLLERRLDNVVYRLGMATTRAQARQLVTHG 151 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLEASQLAERDVPEYISVNHDNMV 176 H++V+GR NI S+ K G VI V+ +S++ A +++++ L + P+++ ++ ++ Sbjct: 152 HIMVDGRKTNIPSFTLKVGQVISVRPESRRRAYFKNLVDSGDLNKYRAPDWLRLDAADLS 211 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + +P +D + Q L+VEFYSR Sbjct: 212 GTVIALPRR-EDAEAGINEQ--LIVEFYSR 238 >gi|320108369|ref|YP_004183959.1| 30S ribosomal protein S4 [Terriglobus saanensis SP1PR4] gi|319926890|gb|ADV83965.1| ribosomal protein S4 [Terriglobus saanensis SP1PR4] Length = 209 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 13/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R++ PG HGQ R K +GLQLR Sbjct: 1 MARYTGAVCRLCRRDGVKLFLKGTRCFSDKCAIEKRNFPPGQHGQARAKKIVGYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ Y + E +FR+ +++A G T L+ LE+RLD +VYR F +RQ Sbjct: 61 KQKAKRIYFTL-ETQFRAYYEKASNRTGVTGELLLQQLETRLDNVVYRLGFAIARRQSRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ--LAERDVPEYISVNH 172 V H HV VNGR VNI S++ K GDVIE+++KSK+L ++ E ++ A + P ++ ++ Sbjct: 120 VVRHGHVNVNGRKVNIPSFQVKVGDVIELREKSKKL-TIAEGAKDFAAAQSTPTWLEIDR 178 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 DN + P +D+ PV Q L+VE YS+ Sbjct: 179 DNYSGKVIAFPKR-EDIQLPVNEQ--LIVELYSK 209 >gi|167626783|ref|YP_001677283.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667363|ref|ZP_04754941.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875913|ref|ZP_05248623.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189045381|sp|B0U0W6|RS4_FRAP2 RecName: Full=30S ribosomal protein S4 gi|158523431|gb|ABW70829.1| 30s ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167596784|gb|ABZ86782.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254841934|gb|EET20348.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 206 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR----SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG RR ++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHGARR-ARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E +F+ + EA+R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEGQFKKYYVEANRRKGNTGATLLEILESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H+ +++NG + N+ S + K GDV+ V++KSK+ + A +LA+ R +I VN D++ Sbjct: 119 VHKGIMLNGHTCNVPSAQVKAGDVVAVREKSKKQLRIQNAIELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + SS + L++E YS+ Sbjct: 179 EGT---MKSSPDRSELSADINEQLIIELYSK 206 >gi|224179457|ref|YP_002600860.1| ribosomal protein S4 [Pycnococcus provasolii] gi|217314500|gb|ACK36842.1| ribosomal protein S4 [Pycnococcus provasolii] Length = 201 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 122/206 (59%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + + R+ PG HG R+ K S F ++LR KQK++ Sbjct: 1 MSRYRGPRIRVVRRLGE-LPGLTRR-IAKRTNPPGEHGAARQ-KQSQFDIRLREKQKLRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ ++ + A +S+G T + L+S LE RLD IVYR F PTI A+RQ V H H Sbjct: 58 HYG-VTERQLLTLVRRARQSKGATGNFLLSTLERRLDNIVYRLGFAPTIRASRQLVTHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR V+I S+ C+ GD+I + +++ V + +R +P ++++ D + Sbjct: 117 ICVNGRCVDISSFNCQIGDIISINTRTQSQKLVEGFIKSNDRPIPPFLALQPDGKSGRVL 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + SLKD+ +P L +E YSR Sbjct: 177 Q-NCSLKDIGLQA--RPQLSIEHYSR 199 >gi|299822736|ref|ZP_07054622.1| 30S ribosomal protein S4 [Listeria grayi DSM 20601] gi|299816265|gb|EFI83503.1| 30S ribosomal protein S4 [Listeria grayi DSM 20601] Length = 200 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPNQRKKLSEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + G N + LE RLD +VYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFDKAGKLPGKQGENFMILLEQRLDNVVYRFGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +S+ E+ ++ VPEY++ + + + + Sbjct: 119 IQVDGKRVDIPSYQVSVGQVITVREKSAKNSSIAESLDVSN-FVPEYVTFDAEKLEGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSE---LAAEINEAFIVEFYSR 200 >gi|300741583|ref|ZP_07071604.1| ribosomal protein S4 [Rothia dentocariosa M567] gi|311113677|ref|YP_003984899.1| 30S ribosomal protein S4 [Rothia dentocariosa ATCC 17931] gi|300380768|gb|EFJ77330.1| ribosomal protein S4 [Rothia dentocariosa M567] gi|310945171|gb|ADP41465.1| 30S ribosomal protein S4 [Rothia dentocariosa ATCC 17931] Length = 210 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 111/199 (55%), Gaps = 10/199 (5%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R +G L + + + R YGPG HG+ RK S + QL+ KQ+++ Y +I E + R Sbjct: 15 RALGIALTPKAEKYLERRPYGPGQHGRARKKADSNYATQLKEKQRLRAQY-NIREAQMRR 73 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA R G T NL+ LE+RLD +V R+ F TI ARQ V HRH++V+G V+ S Sbjct: 74 AYLEAKRVEGQTGKNLVEHLETRLDALVLRSGFARTIAQARQMVVHRHIMVDGVRVDRPS 133 Query: 133 YRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +R K G +I V KS+ Q+A+ E +Q +VP Y++V + + A R P K Sbjct: 134 FRVKPGQLIHVHPKSEKTTPFQVAAAGE-NQAVLPEVPAYLNVEIEKLHAKLERAP---K 189 Query: 188 DVPYPVIMQPNLVVEFYSR 206 PV+ LVVE+YSR Sbjct: 190 REEIPVVCDEQLVVEYYSR 208 >gi|313892885|ref|ZP_07826462.1| ribosomal protein S4 [Veillonella sp. oral taxon 158 str. F0412] gi|313442238|gb|EFR60653.1| ribosomal protein S4 [Veillonella sp. oral taxon 158 str. F0412] Length = 195 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ K+ RR G N++G K+ + +R+ K S +G QL KQK+K Sbjct: 1 MATRREARFKLCRRFGVNVFGHAKALNRVKK-------DQRQKKMSEYGTQLLEKQKVKA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ++ E++F + +A + +G T N++ LE RLD +VYR F +I ARQ VNH H Sbjct: 54 YY-NLLERQFVRYYDKAKKMQGVTGENMLILLEQRLDNLVYRIGFGNSIRQARQMVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SY CK GDVIE+++ S+ +L ++P YI + + ATF Sbjct: 113 ILVNGRRVDIPSYSCKPGDVIELREASRDNEMFKTNFQELRSFELP-YIEKDLEGFKATF 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + L+VE YS+ Sbjct: 172 TRLPQREE---LPIEVNETLIVELYSK 195 >gi|115314194|ref|YP_762917.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica OSU18] gi|122325768|sp|Q0BNQ4|RS4_FRATO RecName: Full=30S ribosomal protein S4 gi|115129093|gb|ABI82280.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica OSU18] Length = 206 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR----SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG RR ++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHGARR-ARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA+ R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKVGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + SS + L++E YS+ Sbjct: 179 EGT---MKSSPDRSELSADINEQLIIELYSK 206 >gi|325299106|ref|YP_004259023.1| ribosomal protein S4 [Bacteroides salanitronis DSM 18170] gi|324318659|gb|ADY36550.1| ribosomal protein S4 [Bacteroides salanitronis DSM 18170] Length = 201 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNTRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASMNGITGEILLQSLECRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + V+G+ VNI S+ K G +I V++KSK L ++ A+ LA + +Y + + ++ + Sbjct: 119 ITVDGKVVNIPSFAVKPGQLIGVREKSKSLEAI--ANSLAGFNHSKYPWLEWDENSKMGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +++VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHMIVELYSK 201 >gi|161507287|ref|YP_001577241.1| 30S ribosomal protein S4 [Lactobacillus helveticus DPC 4571] gi|172048222|sp|A8YUL2|RS4_LACH4 RecName: Full=30S ribosomal protein S4 gi|160348276|gb|ABX26950.1| 30S ribosomal protein S4 [Lactobacillus helveticus DPC 4571] gi|328468696|gb|EGF39681.1| 30S ribosomal protein S4 [Lactobacillus helveticus MTCC 5463] Length = 203 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G+ N + LE RLD+IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGEHGTNFMILLERRLDSIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEWYNK 201 >gi|145596407|ref|YP_001160704.1| ribosomal protein S4 [Salinispora tropica CNB-440] gi|145305744|gb|ABP56326.1| SSU ribosomal protein S4P [Salinispora tropica CNB-440] Length = 208 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P +R + PG HG+ R + Y LQLR KQK ++ YG + EK+FR ++EA + Sbjct: 29 PKCPFESRPFPPGQHGRGRTKETEYL-LQLREKQKARRVYG-VLEKQFRGYYEEAVAKQA 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA + + ARQ V H H +VNG+ V+I SYR KE D++E Sbjct: 87 KTGEVLLQILESRLDNVVYRAGYAKSRDMARQLVKHGHFVVNGKKVDIPSYRVKEHDIVE 146 Query: 143 VKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V+ KSK+L L A ++ + VP ++ M +PS + D +Q L+ Sbjct: 147 VRGKSKELTPFLVAQAESGSKSVPAWLEAIPSQMKVLVHSLPSRQVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|269792766|ref|YP_003317670.1| 30S ribosomal protein S4 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100401|gb|ACZ19388.1| ribosomal protein S4 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 208 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 112/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R+ PG HG R K K S +G++LR KQK++++YG ++E +F +++ A + G Sbjct: 30 KCAIARRNTRPGQHGAR-KGKTSEYGIRLREKQKLRRFYG-LNESQFAKMYEMATKMPGQ 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T H+ + LE RLD +VYR F + AR+ V H H LVNGR +++ S + GDV+ V Sbjct: 88 TGHDFLQLLERRLDNVVYRLGFAVSRRQARELVRHGHFLVNGRKLDVPSALLRAGDVVTV 147 Query: 144 KQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ + + + +++A +R VP ++ VN + M V +P+ + PV Q LVVE Sbjct: 148 REKSRDVEVLKQNAEVASQRSVPGWLEVNPETMSGRVVSLPTR-DQIEVPVNEQ--LVVE 204 Query: 203 FYSR 206 FY+R Sbjct: 205 FYAR 208 >gi|33862500|ref|NP_894060.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9313] gi|124023809|ref|YP_001018116.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9303] gi|41017827|sp|Q7V8U9|RS4_PROMM RecName: Full=30S ribosomal protein S4 gi|152112246|sp|A2CBJ1|RS4_PROM3 RecName: Full=30S ribosomal protein S4 gi|33640613|emb|CAE20402.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9313] gi|123964095|gb|ABM78851.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9303] Length = 202 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 122/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RS+ PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSHPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQDGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR ++I SY+CK GDV+ ++++ SK+LA LE LA +VP +I ++ M A Sbjct: 117 VTVNGRVLDIASYQCKAGDVVAIRERKGSKKLAEANLEFPGLA--NVPPHIELDKAKMSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + S + + + LVVE+YSR Sbjct: 175 KII---SKCEREWVALEINELLVVEYYSR 200 >gi|302869943|ref|YP_003838580.1| 30S ribosomal protein S4 [Micromonospora aurantiaca ATCC 27029] gi|315501404|ref|YP_004080291.1| ribosomal protein s4 [Micromonospora sp. L5] gi|302572802|gb|ADL49004.1| ribosomal protein S4 [Micromonospora aurantiaca ATCC 27029] gi|315408023|gb|ADU06140.1| ribosomal protein S4 [Micromonospora sp. L5] Length = 208 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 103/186 (55%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P +R + PG HG+ R + Y LQLR KQK ++ YG + EK+FR ++EA Sbjct: 29 PKCPFESRPFPPGQHGRGRTKETEYL-LQLREKQKARRVYG-VLEKQFRGYYEEAVSKEA 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA + + ARQ V H H VNG+ V+I SYR KE D+IE Sbjct: 87 KTGEVLLQILESRLDNVVYRAGYAKSRDMARQLVKHGHFTVNGKKVDIPSYRVKEHDIIE 146 Query: 143 VKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V+ KSK+L L A + R VP ++ M +P+ + D +Q L+ Sbjct: 147 VRAKSKELTPFLVAQGEAGSRTVPAWLEAIPSQMKILVHSLPARQVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|90655388|gb|ABD96229.1| 30S ribosomal protein S4 [uncultured marine type-A Synechococcus GOM 3M9] Length = 202 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 121/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V+VNGR +I SY+CK GDVI ++++ SK+LA LE LA ++P ++ ++ + A Sbjct: 117 VMVNGRVTDIASYQCKTGDVIAIRERKGSKKLAEGNLEFPGLA--NIPPHMELDKTKLTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 175 KIV---GKCEREWVALEINELLVVEYYSR 200 >gi|317050554|ref|YP_004111670.1| 30S ribosomal protein S4 [Desulfurispirillum indicum S5] gi|316945638|gb|ADU65114.1| ribosomal protein S4 [Desulfurispirillum indicum S5] Length = 208 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R+Y PG HGQRR KPS + +QLR KQK+++ YG + E +FR F +A R +G Sbjct: 30 KCAFERRAYAPGSHGQRR-GKPSDYAIQLREKQKVRRTYG-LLETQFRRTFDKAVRMKGV 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL++ LE R D +VYR + +RQ + H H L+NG+ NI S + + GDVI + Sbjct: 88 TGSNLLTLLELRFDNVVYRLGLGVSRSQSRQLITHGHFLLNGKKANIPSIQLRAGDVISL 147 Query: 144 KQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS L V + + R VP+++ + + + ++P +DV PV NL+VE Sbjct: 148 REKSANLDVVRGSVEAGPSRTVPQWLEFDAEKLTGKVKQLPVR-EDVTEPVT--ENLIVE 204 Query: 203 FYSR 206 YSR Sbjct: 205 LYSR 208 >gi|219849861|ref|YP_002464294.1| 30S ribosomal protein S4 [Chloroflexus aggregans DSM 9485] gi|254764578|sp|B8G6P9|RS4_CHLAD RecName: Full=30S ribosomal protein S4 gi|219544120|gb|ACL25858.1| ribosomal protein S4 [Chloroflexus aggregans DSM 9485] Length = 206 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 M++ K+ RR+G + + + +N R PG HG R+ S +G QLR KQK K Sbjct: 1 MARFRGPVGKVSRRLGIGITEKGQRILNKRPDPPGQHGAAARRRALSDYGAQLREKQKAK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR +F++A R G T L+S LE RLD +VYR F T ARQ VNH Sbjct: 61 FIYG-VLERQFRRLFEQAARRSGVTGEYLLSLLERRLDNVVYRLGFATTRAQARQLVNHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMV 176 H++V+GR NI SY K G VI V+ +S+ +++++ L + PE++ +N + Sbjct: 120 HIVVDGRKTNIPSYTVKVGQVIAVRPQSRSRTYFKNLVDSGVLNKHRAPEWLRLNPAELS 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T V +P +D + Q L+VEFYSR Sbjct: 180 GTVVALPRR-EDAEAGINEQ--LIVEFYSR 206 >gi|330430072|gb|AEC21406.1| 30S ribosomal protein S4 [Pusillimonas sp. T7-7] Length = 154 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 5/158 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +QLR KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T Sbjct: 1 MQLREKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTR 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYI 168 ARQ VNHR + +NG + +I S K GDVI +++K+K + E+ LA + +P+++ Sbjct: 60 AEARQLVNHRAIELNGHTADIASMLVKAGDVISIREKAKAQLRIRESLDLATGQGLPQWV 119 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+ + + TF + P DV V ++VVE YSR Sbjct: 120 EVDTNKLAGTFKQAPDR-ADVARDV--NESMVVELYSR 154 >gi|326203868|ref|ZP_08193730.1| ribosomal protein S4 [Clostridium papyrosolvens DSM 2782] gi|325985966|gb|EGD46800.1| ribosomal protein S4 [Clostridium papyrosolvens DSM 2782] Length = 208 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K V R Y PG HGQ +K K S +G+QLR Sbjct: 1 MARYTDASCRLCRREGEKLFLKGERCYTDKCSVARRPYAPGQHGQAKK-KMSEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 K K++++YG + E +F F+ A R +G T NL+ LE+RLD +VYR + +RQ Sbjct: 60 KAKVRRFYG-VLEGQFSQYFEMASRRKGITGENLLQILETRLDNVVYRLGLGTSRPESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H +NG+ VNI SY K GDVI V KSK V ++A + VP+++ N + Sbjct: 119 LVTHGHFTINGKRVNIPSYLIKVGDVIAVADKSKSSPKVKSIREIAGGKVVPKWLEFNEE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V V +P+ +D+ P+ + +L+VE YS+ Sbjct: 179 NLVGKVVALPAR-EDIDLPI--REHLIVELYSK 208 >gi|22297691|ref|NP_680938.1| 30S ribosomal protein S4 [Thermosynechococcus elongatus BP-1] gi|26399368|sp|P59134|RS4_THEEB RecName: Full=30S ribosomal protein S4 gi|22293868|dbj|BAC07700.1| 30S ribosomal protein S4 [Thermosynechococcus elongatus BP-1] Length = 202 Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 123/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+GE L G + V RSY PG HGQ RK K S + L+L KQK++ Sbjct: 1 MARYRGPRLRIVRRLGE-LAGLTRK-VPKRSYPPGQHGQARK-KRSEYALRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-VSERQLVRYVRKARRVSGSTGQTLLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR+V+I SY+C+ GDVI V+ ++S++L L+ LA ++P ++ ++ + Sbjct: 117 ILVNGRNVSIPSYQCRPGDVITVRDNERSRRLVETNLQNPGLA--NLPSHLELDKSTLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+ ++ + + LVVE+YSR Sbjct: 175 ---RVTGIVERQWVALEVNELLVVEYYSR 200 >gi|315655401|ref|ZP_07908301.1| 30S ribosomal protein S4 [Mobiluncus curtisii ATCC 51333] gi|315490341|gb|EFU79966.1| 30S ribosomal protein S4 [Mobiluncus curtisii ATCC 51333] Length = 206 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 114/210 (54%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M R ++ R +G L + K R YGPG HG+ R+ S + ++L+ KQ+++ Sbjct: 1 MGNRSRKMVRLSRALGMPLTPKAKRYFERRPYGPGEHGRARRRSESDYAVRLKEKQRLRA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y I E + F+EA R G T NL+ LE RLD +V RA F T+F ARQ V HRH Sbjct: 61 QYA-IREAQLVKTFQEARRMEGQTGDNLVELLEMRLDALVLRAGFGRTMFQARQAVTHRH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMV 176 +LV+G+ V+ SY+ + G ++VK S+ + A++ + RD VP+Y+ V+ + + Sbjct: 120 ILVDGKIVDRPSYKVRPGQTVQVKPTSQVKDPFVVAARGSHRDVLPPVPDYLKVDLEKLR 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R P K P+ + LVVE YSR Sbjct: 180 FTLERKP---KREEVPIQCEVQLVVEHYSR 206 >gi|295093660|emb|CBK82751.1| SSU ribosomal protein S4P [Coprococcus sp. ART55/1] Length = 197 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 11/171 (6%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+++ +A++ +G T NL++ LE RLD I Sbjct: 34 RSNRKQSEYGLQLREKQKAKFIYG-VLEKPFRNLYAKAEQQKGLTGPNLMTLLELRLDNI 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLEA 156 ++R F T ARQ V+H+HVLVNG+ VNI SY K GD IE+++KSK L ++ A Sbjct: 93 IFRLGFARTRREARQIVDHKHVLVNGKCVNIPSYSVKPGDKIEIREKSKSLQRYKDIMAA 152 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++ VP +++ + DN+ V PS + DVP + L+VE YS+ Sbjct: 153 TEGVL--VPGWLTADRDNLAGEVVEKPSREQIDVP----VNETLIVELYSK 197 >gi|56752482|ref|YP_173183.1| 30S ribosomal protein S4 [Synechococcus elongatus PCC 6301] gi|81300296|ref|YP_400504.1| 30S ribosomal protein S4 [Synechococcus elongatus PCC 7942] gi|61215367|sp|Q5MZ57|RS4_SYNP6 RecName: Full=30S ribosomal protein S4 gi|123556802|sp|Q31N52|RS4_SYNE7 RecName: Full=30S ribosomal protein S4 gi|56687441|dbj|BAD80663.1| 30S ribosomal protein S4 [Synechococcus elongatus PCC 6301] gi|81169177|gb|ABB57517.1| SSU ribosomal protein S4P [Synechococcus elongatus PCC 7942] Length = 202 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGD-LPGLTRKAAR-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A R +G T NL+ LE RLD +V+R F PTI ARQ VNH H Sbjct: 58 NYG-LSERQLVRYVKKARRMQGSTGTNLLQLLEMRLDNLVFRLGFAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SY C+ G+VI V+Q+ S++L + LE LA +VP ++ + + + A Sbjct: 117 VTVNGRVVDIASYNCRPGEVIGVRQREASRKLVTANLEYPGLA--NVPVHLDFDKNKLEA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + LVVE+YSR Sbjct: 175 ---KVTGACEREWVALQINELLVVEYYSR 200 >gi|50365403|ref|YP_053828.1| 30S ribosomal protein S4 [Mesoplasma florum L1] gi|61215527|sp|Q6F0M9|RS4_MESFL RecName: Full=30S ribosomal protein S4 gi|50363959|gb|AAT75944.1| 30S ribosomal protein S4 [Mesoplasma florum L1] Length = 208 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 9/210 (4%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQK 57 MS+ S K RR G ++ G+ S R PG HG+ + + K S +G QL+ KQK Sbjct: 1 MSRYTGSTFKKARRYGFSILENGKEFSKGKKRVTTPGQHGKDKARLKMSGYGAQLQEKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 +K YG ++E++FR+ F +A + G N + LESRLD IV+R F T AARQ V Sbjct: 61 VKFMYG-MTERQFRNTFAKAKKVHGGILGTNFLVLLESRLDNIVFRLGFAMTRQAARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV 176 NH H+LVNG+ ++I SY+ K GD IEVK+ K+ + EA Q E V E++ V+ N+ Sbjct: 120 NHGHILVNGKKLDIPSYQVKPGDSIEVKEAMKKNDKIAEALQNNESTV-EFVKVDKANLK 178 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FVR+P + + + L+VE+Y+R Sbjct: 179 GQFVRLPERQE---LNLEINDALIVEWYNR 205 >gi|78212331|ref|YP_381110.1| 30S ribosomal protein S4 [Synechococcus sp. CC9605] gi|123578565|sp|Q3ALH7|RS4_SYNSC RecName: Full=30S ribosomal protein S4 gi|78196790|gb|ABB34555.1| ribosomal protein S4 [Synechococcus sp. CC9605] Length = 202 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G +L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLG-DLPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SK+LA LE LA +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKKLAEANLEFPGLA--NVPSHLELDKSKLSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + LVVE+YSR Sbjct: 175 ---KVTARCEREWVALEINELLVVEYYSR 200 >gi|255327167|ref|ZP_05368242.1| ribosomal protein S4 [Rothia mucilaginosa ATCC 25296] gi|255295785|gb|EET75127.1| ribosomal protein S4 [Rothia mucilaginosa ATCC 25296] Length = 210 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 8/198 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R +G L + + + R YGPG HG+ RK S + QL+ KQ+++ Y +I E + R Sbjct: 15 RALGIALTPKAEKYLERRPYGPGQHGRARKKADSNYATQLKEKQRLRAQY-NIREAQMRR 73 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA R+ G T N++ LE+RLD +V RA F TI ARQ V HRH++V+G V+ S Sbjct: 74 AYLEAKRTEGQTGKNMVELLETRLDALVLRAGFARTIAQARQMVVHRHIMVDGVRVDRPS 133 Query: 133 YRCKEGDVIEVKQKSKQL----ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 + K G +I V K+++ A+ +Q +VP Y++V + + A R P K Sbjct: 134 FHVKPGQLIHVHPKAEKTTPFQAAAAGENQAVLPEVPAYLNVEIEKLHAKLERKP---KR 190 Query: 189 VPYPVIMQPNLVVEFYSR 206 PVI LVVE+YSR Sbjct: 191 EEIPVICDEQLVVEYYSR 208 >gi|238061095|ref|ZP_04605804.1| 30S ribosomal protein S4 [Micromonospora sp. ATCC 39149] gi|237882906|gb|EEP71734.1| 30S ribosomal protein S4 [Micromonospora sp. ATCC 39149] Length = 208 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 105/186 (56%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P +R + PG HG+ R + Y LQLR KQK ++ YG + EK+FR ++EA + Sbjct: 29 PKCPFESRPFPPGQHGRGRTKETEYL-LQLREKQKARRVYG-VLEKQFRGYYEEAVAKQA 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA + + ARQ V H H VNG+ V+I SYR KE D+IE Sbjct: 87 KTGEVLLQILESRLDNVVYRAGYAKSRDMARQLVKHGHFTVNGKKVDIPSYRVKEHDIIE 146 Query: 143 VKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V+ KSK+L + A ++ R VP ++ M +P+ + D +Q L+ Sbjct: 147 VRGKSKELTPFIVAQAEAGSRTVPAWLEAIPSQMKVLVHSLPARQVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|224023644|ref|ZP_03642010.1| hypothetical protein BACCOPRO_00351 [Bacteroides coprophilus DSM 18228] gi|224016866|gb|EEF74878.1| hypothetical protein BACCOPRO_00351 [Bacteroides coprophilus DSM 18228] Length = 201 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNNRRKKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A + G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASANGITGEILLQSLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + V+G+ VNI SY K G ++ V+++SK L + S LA + +Y + + ++ Sbjct: 119 ITVDGKVVNIPSYSVKPGQLVGVRERSKSLEVI--GSALAGFNHSKYPWLEWDENSKTGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D+P + + +L+VE YS+ Sbjct: 177 MLHIPER-ADIPENI--KEHLIVELYSK 201 >gi|187932119|ref|YP_001892104.1| 30S ribosomal protein S4 [Francisella tularensis subsp. mediasiatica FSC147] gi|226699067|sp|B2SDW1|RS4_FRATM RecName: Full=30S ribosomal protein S4 gi|187713028|gb|ACD31325.1| 30S ribosomal protein S4 [Francisella tularensis subsp. mediasiatica FSC147] Length = 206 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR----SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG RR ++ S +GLQLR +Q Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHGARR-ARLSDYGLQLRERQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA+ R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + SS + L++E YS+ Sbjct: 179 EGT---MKSSPDRSELSADINEQLIIELYSK 206 >gi|296113774|ref|YP_003627712.1| 30S ribosomal protein S4 [Moraxella catarrhalis RH4] gi|295921468|gb|ADG61819.1| 30S ribosomal protein S4 [Moraxella catarrhalis RH4] gi|326562119|gb|EGE12447.1| 30S ribosomal protein S4 [Moraxella catarrhalis 7169] gi|326564516|gb|EGE14742.1| 30S ribosomal protein S4 [Moraxella catarrhalis 46P47B1] gi|326566268|gb|EGE16420.1| 30S ribosomal protein S4 [Moraxella catarrhalis 103P14B1] gi|326567080|gb|EGE17202.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC1] gi|326568344|gb|EGE18424.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC7] gi|326572245|gb|EGE22240.1| 30S ribosomal protein S4 [Moraxella catarrhalis BC8] gi|326574587|gb|EGE24527.1| 30S ribosomal protein S4 [Moraxella catarrhalis O35E] gi|326574843|gb|EGE24773.1| 30S ribosomal protein S4 [Moraxella catarrhalis 101P30B1] gi|326576167|gb|EGE26082.1| 30S ribosomal protein S4 [Moraxella catarrhalis CO72] Length = 213 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 17/218 (7%) Query: 1 MSKRESSKHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L G V T+ G PG HG ++K S + QLR K Sbjct: 1 MARYIGPKLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGNS-QNKTSEYASQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K+ YG + E++F + +KEA R RG T NL+ LE RLD +VYR F T ARQ Sbjct: 60 QKVKRMYG-VLERQFSNYYKEAARERGATGENLLVTLERRLDNVVYRMGFGATRAEARQL 118 Query: 116 VNHRHVLVN--GRS----VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYI 168 V+HR +++ GR VNI S + ++GDVI V +KSK+ + A +LA +R +P ++ Sbjct: 119 VSHRAIMLKKAGRDEFVRVNIPSIQVQDGDVIAVHEKSKEQLRIKNAVELATQRGIPAWL 178 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+H + TF P + P + NL+VE YS+ Sbjct: 179 EVDHSKLQGTFKSAPERSE---LPAEINENLIVELYSK 213 >gi|6137687|pdb|1QD7|C Chain C, Partial Model For 30s Ribosomal Subunit gi|7245451|pdb|1EG0|A Chain A, Fitting Of Components With Known Structure Into An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome gi|253722760|pdb|1C05|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41, Refined With Dipolar Couplings (Minimized Average Structure) gi|253722761|pdb|1C06|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41, Refined With Dipolar Couplings (Ensemble Of 16 Structures) Length = 159 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 5/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +GLQL+ KQK++ YG ++E++FR F+EA + G N + LESRLD +VYR Sbjct: 2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRL 60 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T ARQ V H H+LV+G VNI SYR K G I V++KS+ L + EA + A Sbjct: 61 GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNY 119 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+Y+S + + M T+ R+P + P + L+VEFYSR Sbjct: 120 IPDYLSFDPEKMEGTYTRLPERSE---LPAEINEALIVEFYSR 159 >gi|167767777|ref|ZP_02439830.1| hypothetical protein CLOSS21_02312 [Clostridium sp. SS2/1] gi|317497068|ref|ZP_07955395.1| ribosomal protein S4 [Lachnospiraceae bacterium 5_1_63FAA] gi|167710516|gb|EDS21095.1| hypothetical protein CLOSS21_02312 [Clostridium sp. SS2/1] gi|291558882|emb|CBL37682.1| SSU ribosomal protein S4P [butyrate-producing bacterium SSC/2] gi|316895613|gb|EFV17768.1| ribosomal protein S4 [Lachnospiraceae bacterium 5_1_63FAA] Length = 197 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQL KQK K YG + EK FR+ + +A+R +G T NL++ LE RLD + Sbjct: 34 RANRKKSEYGLQLCEKQKAKFIYG-VLEKPFRNYYAKAERMKGQTGTNLMTLLELRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 ++R + T RQ V+H+HVLVNG+ VNI SY+ K GDVIE+K+K + E ++ Sbjct: 93 LFRLGYGRTRKECRQIVDHKHVLVNGKQVNIPSYQVKAGDVIEIKEKHRTSPRYKEILEV 152 Query: 160 AE-RDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 E R +P ++ +HDN T +PS + DVP + L+VE YS+ Sbjct: 153 TEGRMIPSWLEADHDNFTGTVKELPSRDEIDVP----VNETLIVELYSK 197 >gi|153812444|ref|ZP_01965112.1| hypothetical protein RUMOBE_02843 [Ruminococcus obeum ATCC 29174] gi|149831369|gb|EDM86457.1| hypothetical protein RUMOBE_02843 [Ruminococcus obeum ATCC 29174] Length = 197 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 100/172 (58%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK F + + +ADR G T NL+ LESRLD Sbjct: 33 KRANRKVSEYGLQLREKQKAKFIYG-VLEKPFHNYYNKADRMPGQTGENLMVLLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +V+R T ARQ V+H+HVLVNG+ VNI SY K GD IE+K+K K + +LE Sbjct: 92 VVFRMGLARTRREARQIVDHKHVLVNGKCVNIPSYLVKAGDTIEIKEKCKGSERYKGILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIP-SSLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ VN + + T +P DVP + L+VE YS+ Sbjct: 152 VT--GGRLVPEWLDVNQEALSGTVKELPRREAIDVP----VNEMLIVELYSK 197 >gi|299141173|ref|ZP_07034310.1| ribosomal protein S4 [Prevotella oris C735] gi|298577133|gb|EFI49002.1| ribosomal protein S4 [Prevotella oris C735] Length = 201 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G VI V++KSK L + A +I + ++ F+ Sbjct: 119 ITVDGKVVNIPSFAVKPGMVIAVREKSKSLEVIEVALAGFNHSKYPWIEWDDNSKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P D+P + Q L+VE YS+ Sbjct: 179 HKPER-ADIPENIKEQ--LIVELYSK 201 >gi|327479347|gb|AEA82657.1| 30S ribosomal protein S4 [Pseudomonas stutzeri DSM 4166] Length = 167 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 6/172 (3%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +HGQRR + S +G QLR KQK+++ YG + E++F +KEA +G T NL+ LE R Sbjct: 1 MHGQRR-GRLSDYGTQLREKQKVRRIYG-VLERQFSGYYKEAASRKGATGENLLQLLECR 58 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD +VYR F T +RQ V+H+ + VNG++VNI SY+ K GDV+ V++K + + + Sbjct: 59 LDNVVYRMGFGSTRAESRQLVSHKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQ 118 Query: 156 ASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +L A+R E++ V+ D F +P+ D+ + NL+VE YS+ Sbjct: 119 ALELCAQRGRVEWVEVDADKKSGVFKNVPAR-SDLSADI--NENLIVELYSK 167 >gi|218660338|ref|ZP_03516268.1| 30S ribosomal protein S4 [Rhizobium etli IE4771] Length = 75 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 58/74 (78%), Positives = 66/74 (89%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIF 74 YYGD+ EK+FR+IF Sbjct: 61 YYGDLREKQFRAIF 74 >gi|304389439|ref|ZP_07371402.1| 30S ribosomal protein S4 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656686|ref|ZP_07909573.1| 30S ribosomal protein S4 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327249|gb|EFL94484.1| 30S ribosomal protein S4 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492641|gb|EFU82245.1| 30S ribosomal protein S4 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 206 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M R ++ R +G L + K R YGPG HG+ R+ S + ++L+ KQ+++ Sbjct: 1 MGNRSRKMVRLSRALGMPLTPKAKRYFERRPYGPGEHGRARRRSESDYAVRLKEKQRLRA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y I E + F+EA R G T NL+ LE RLD +V RA F T+F ARQ V HRH Sbjct: 61 QYA-IREAQLVKTFQEARRMEGQTGDNLVELLEMRLDALVLRAGFGRTMFQARQAVTHRH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMV 176 +LV+G+ V+ SY+ + G +++K S+ + A++ + RD VP+Y+ V+ + + Sbjct: 120 ILVDGKIVDRPSYKVRPGQTVQIKPTSQVKDPFVVAARGSHRDVLPPVPDYLKVDLEKLR 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R P K P+ + LVVE YSR Sbjct: 180 FTLERKP---KREEVPIQCEVQLVVEHYSR 206 >gi|260435631|ref|ZP_05789601.1| ribosomal protein S4 [Synechococcus sp. WH 8109] gi|260413505|gb|EEX06801.1| ribosomal protein S4 [Synechococcus sp. WH 8109] Length = 241 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 40 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 96 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 97 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 155 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SK+LA LE LA +VP ++ ++ + A Sbjct: 156 VTVNGRVTDIASYQCKPGDVIAIRERKCSKKLAEANLEFPGLA--NVPSHLELDKSKLSA 213 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + LVVE+YSR Sbjct: 214 ---KVTARCEREWVALEINELLVVEYYSR 239 >gi|288925689|ref|ZP_06419621.1| ribosomal protein S4 [Prevotella buccae D17] gi|315606478|ref|ZP_07881493.1| 30S ribosomal protein S4 [Prevotella buccae ATCC 33574] gi|288337627|gb|EFC75981.1| ribosomal protein S4 [Prevotella buccae D17] gi|315251884|gb|EFU31858.1| 30S ribosomal protein S4 [Prevotella buccae ATCC 33574] Length = 201 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 123/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MAKYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKVSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFDKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 ++V+G+ V+I SY K G V+ V++K+K L V+EA+ LA + +Y + + + Sbjct: 119 IVVDGKVVSIPSYSVKAGQVVGVREKAKSL-EVIEAA-LAGFNHSKYPWLEWDQNTKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|295398656|ref|ZP_06808680.1| 30S ribosomal protein S4 [Aerococcus viridans ATCC 11563] gi|294973091|gb|EFG48894.1| 30S ribosomal protein S4 [Aerococcus viridans ATCC 11563] Length = 203 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+G ++ G K + R Y PG HG R++K S +GLQL+ KQK++ Sbjct: 1 MSRFTGSNWKVSRRLGISISGTGKE-IARRPYAPGEHGNGRRAKLSEYGLQLQEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++EK+F ++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 IYG-MNEKQFANLFVQAGKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I S+R + G VI V++KSK + + EA + VP Y+ + + + + Sbjct: 119 HITVDGKRVDIPSFRVQPGQVISVREKSKDVKVIKEAVEGLYGHVP-YVQFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P +D I +LVVE+Y++ Sbjct: 178 IRLPQ--RDEMNQEI-DESLVVEYYNK 201 >gi|260102591|ref|ZP_05752828.1| 30S ribosomal protein S4 [Lactobacillus helveticus DSM 20075] gi|260083618|gb|EEW67738.1| 30S ribosomal protein S4 [Lactobacillus helveticus DSM 20075] Length = 203 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G+ N + LE RLD+IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFIRAGKIREGEHGTNFMILLERRLDSIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEWYNK 201 >gi|269128486|ref|YP_003301856.1| 30S ribosomal protein S4 [Thermomonospora curvata DSM 43183] gi|268313444|gb|ACY99818.1| ribosomal protein S4 [Thermomonospora curvata DSM 43183] Length = 209 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 5/185 (2%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P+ R Y PG HG+ R + Y LQLR KQK ++ YG + EK+F + ++ A+R G Sbjct: 29 PKCPIEIRPYPPGEHGRGRPKETEYL-LQLREKQKARRIYG-VLEKQFHNYYEIANRKSG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD +VYRA F + ARQ + H H VNGR V+I S+ E DVIE Sbjct: 87 KTGDVLLQLLERRLDNVVYRAGFAKSRDMARQLIRHGHFKVNGRKVDIPSFLVSENDVIE 146 Query: 143 VKQKSKQLAS-VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 VK KS +L V+ ++ ER P ++ + + + + + + PV Q L+V Sbjct: 147 VKPKSHELTPFVVARAEAGERQTPAWLEAITEPTMRILIHSLPTRQQIDTPV--QEQLIV 204 Query: 202 EFYSR 206 E YS+ Sbjct: 205 ELYSK 209 >gi|323359962|ref|YP_004226358.1| ribosomal protein S4 [Microbacterium testaceum StLB037] gi|323276333|dbj|BAJ76478.1| ribosomal protein S4 [Microbacterium testaceum StLB037] Length = 209 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 110/202 (54%), Gaps = 8/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ R +G L + + R Y PG HG+ ++ S + ++LR KQ++++ YG I E Sbjct: 10 KVRLSRALGVALTPKAARYLEKRPYAPGEHGRTKRKADSDYAVRLREKQRLREQYG-IRE 68 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R F EA R+ G T NL+ LE RLD +V R+ F T ARQ V HRH+LV+G+ Sbjct: 69 KQLRIAFNEARRTDGLTGENLVELLEMRLDALVVRSGFARTTAQARQLVVHRHILVDGQL 128 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLA--SVLEASQLAE--RDVPEYISVNHDNMVATFVRIP 183 V+ S+R K G I VK KS+ L V A AE VP Y+ V+ + A VR P Sbjct: 129 VDRPSFRVKPGQQIHVKPKSEGLEPFQVAAAGGHAEVLPPVPGYLEVDLSTLQAKLVRRP 188 Query: 184 SSLKDVPYPVIMQPNLVVEFYS 205 K PV LVVE+Y+ Sbjct: 189 ---KRAEVPVTCDVQLVVEYYA 207 >gi|108773320|ref|YP_635875.1| ribosomal protein S4 [Oltmannsiellopsis viridis] gi|122195135|sp|Q20EX0|RR4_OLTVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|82541902|gb|ABB81943.1| ribosomal protein S4 [Oltmannsiellopsis viridis] Length = 200 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G S PG HG +K S +G++L+ KQK++ Sbjct: 1 MSRYRGPRLRIIRRLGE-LPGFTSKTTTRTSS-PGQHGGSNFAKSSAYGIRLQEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++ S K+A R +G T L+ LE RLD +V+R PT+ AARQ ++H H Sbjct: 59 NYG-ITERQLLSYVKKAKRMKGSTGEVLLQLLEMRLDNVVFRLGMAPTVVAARQLISHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VN + V I SY C+ DVI V+ K+ V EA+ A +VP ++S N +++V Sbjct: 118 IVVNDQKVTIPSYACQVKDVISVRAKNNSRKMVTEANSTATANVPSHLSWNKESLVGVVN 177 Query: 181 RIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++ KDV +Q N LVVE+YSR Sbjct: 178 KVIDR-KDVG----LQLNELLVVEYYSR 200 >gi|282855416|ref|ZP_06264737.1| ribosomal protein S4 [Pyramidobacter piscolens W5455] gi|282586712|gb|EFB91959.1| ribosomal protein S4 [Pyramidobacter piscolens W5455] Length = 206 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 120/210 (57%), Gaps = 12/210 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 ++++ + K KI RR+G N++G PK + + P RR++K S +GLQL+ KQK++ Sbjct: 5 VNRKVTPKGKIVRRLGANVFGNPKYDKLLAKKATPPGGAPRRRAKQSIYGLQLQEKQKIR 64 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+ R+++ A + G T N++ LESR D +VYR + T ARQ V H Sbjct: 65 LAYG-VSEKQLRAVYVAAKKMDGVTGSNMLILLESRFDNVVYRLGYCVTRPQARQLVRHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMV 176 H LVNGR V++ R GDV+ V++ S ++ + LEA+ + P ++++ Sbjct: 124 HFLVNGRKVDMPGVRLNPGDVVTVRENSAEMVVLKQNLEAAAAVSK--PAWLTLEGGK-- 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T VR+P D+P I +VVEFYS+ Sbjct: 180 GTIVRLPER-ADIPN--IADEQVVVEFYSK 206 >gi|317485797|ref|ZP_07944661.1| ribosomal protein S4 [Bilophila wadsworthia 3_1_6] gi|316922903|gb|EFV44125.1| ribosomal protein S4 [Bilophila wadsworthia 3_1_6] Length = 208 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDAKCRLCRREGTKLLLKGDRCFTDKCAFDRRPYAPGQHGRARK-KLSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+F F AD ++G T NL++FLE RLD +VYR F + ARQ Sbjct: 60 KQKVRRVYG-VLEKQFHGYFVHADMAKGVTGANLLAFLERRLDNVVYRLGFANSRTQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NG V I S + K GD +EV +KS+ + + EA + +A R P ++ V+ Sbjct: 119 LVRHGVFTLNGHKVTIPSLQVKVGDSVEVPEKSRTIPVLAEAQEAVARRGCPSWLEVDAP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P D+ +P+ +L+VE YS+ Sbjct: 179 NFKGIVKALPQR-DDIQFPI--NEHLIVELYSK 208 >gi|309785618|ref|ZP_07680249.1| ribosomal protein S4 [Shigella dysenteriae 1617] gi|308926738|gb|EFP72214.1| ribosomal protein S4 [Shigella dysenteriae 1617] gi|313647394|gb|EFS11846.1| ribosomal protein S4 [Shigella flexneri 2a str. 2457T] gi|323164860|gb|EFZ50651.1| ribosomal protein S4 [Shigella sonnei 53G] gi|332086274|gb|EGI91430.1| ribosomal protein S4 [Shigella dysenteriae 155-74] Length = 154 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 5/158 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +QLR KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T Sbjct: 1 MQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATR 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYI 168 ARQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ Sbjct: 60 AEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 119 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+ M TF R P D+ + +L+VE YS+ Sbjct: 120 EVDAGKMEGTFKRKPER-SDLSADI--NEHLIVELYSK 154 >gi|302876506|ref|YP_003845139.1| 30S ribosomal protein S4 [Clostridium cellulovorans 743B] gi|307687178|ref|ZP_07629624.1| 30S ribosomal protein S4 [Clostridium cellulovorans 743B] gi|302579363|gb|ADL53375.1| ribosomal protein S4 [Clostridium cellulovorans 743B] Length = 206 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 117/214 (54%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGE--NLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR GE NL G K + R Y PG HGQ +K K S +G+QLR Sbjct: 1 MARYTGPVCRLCRREGEKLNLKGDRCFTDKCAFDRRGYAPGQHGQSKK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR + +AD+ RG T NL+ LE RLD ++YR + + ARQ Sbjct: 60 KQKAKRIYG-VLENQFRRTYDKADKMRGITGENLVKLLEMRLDNVIYRLGYGNSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H LVNG+ V+I SY K GDVI V++KS+ + AE R +P ++S + Sbjct: 119 LVTHGHFLVNGKKVDIPSYVVKAGDVITVREKSRATETF---KTFAENPRVLPAWLSGDI 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V PS +D+ P + L+VE YS+ Sbjct: 176 ATFEGKVVTAPSR-EDIDVP--LNETLIVELYSK 206 >gi|295425094|ref|ZP_06817799.1| 30S ribosomal protein S4 [Lactobacillus amylolyticus DSM 11664] gi|295065153|gb|EFG56056.1| 30S ribosomal protein S4 [Lactobacillus amylolyticus DSM 11664] Length = 203 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGVSLSGTGKE-IARRNYAPGQHGTNSRGRLSEYGEQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD IVYR T ARQ VNH Sbjct: 60 AYG-LNERQFRALFARAGKIREGQHGTNFMILLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A A P Y++ + + M + Sbjct: 119 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALD-AVTARPSYVAFDDNKMEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P + + LVVE+Y++ Sbjct: 178 VRLPE--RDEMDPNVNEA-LVVEWYNK 201 >gi|238018666|ref|ZP_04599092.1| hypothetical protein VEIDISOL_00510 [Veillonella dispar ATCC 17748] gi|269798510|ref|YP_003312410.1| ribosomal protein S4 [Veillonella parvula DSM 2008] gi|282849905|ref|ZP_06259288.1| ribosomal protein S4 [Veillonella parvula ATCC 17745] gi|237865137|gb|EEP66427.1| hypothetical protein VEIDISOL_00510 [Veillonella dispar ATCC 17748] gi|269095139|gb|ACZ25130.1| ribosomal protein S4 [Veillonella parvula DSM 2008] gi|282580342|gb|EFB85742.1| ribosomal protein S4 [Veillonella parvula ATCC 17745] Length = 195 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ K+ RR G N++G K+ + +R+ K S +G QL KQK+K Sbjct: 1 MATRREARFKLCRRFGVNVFGHAKALNRVKK-------DQRQKKMSEYGTQLLEKQKVKA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ++ E++F + +A + +G T N++ LE RLD +VYR F +I ARQ VNH H Sbjct: 54 YY-NLLERQFVRYYDKAKKMQGVTGQNMLILLEQRLDNLVYRIGFGNSIRQARQMVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I S+ CK GDVIE+++ S+ +L ++P YI + + ATF Sbjct: 113 ILVNGRRVDIPSFSCKPGDVIELREASRDNEMFKTNFQELRSFELP-YIEKDLEGFKATF 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + L+VE YS+ Sbjct: 172 TRLPQREE---LPIEVNETLIVELYSK 195 >gi|225873051|ref|YP_002754510.1| ribosomal protein S4 [Acidobacterium capsulatum ATCC 51196] gi|254764560|sp|C1F615|RS4_ACIC5 RecName: Full=30S ribosomal protein S4 gi|225792033|gb|ACO32123.1| ribosomal protein S4 [Acidobacterium capsulatum ATCC 51196] Length = 209 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R++ PG HG+ RK+K +GLQLR KQK K+ Y + E +FR +++A R+ G Sbjct: 30 KCAIEKRNFAPGQHGRDRKAKIVGYGLQLREKQKAKRIYFTL-EGQFREYYEKASRAPGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T LI LE RLD I +R F + ARQ V H HV VNGR VNI S++ K GD I++ Sbjct: 89 TGELLIQQLECRLDNIAFRLGFATSRRQARQIVRHGHVEVNGRKVNIPSFQVKVGDEIKI 148 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + S +L V A + P ++ V+H N+ V +P +DV PV Q L+VE Sbjct: 149 RPNSSKLVVVEMGRDFASGQPAPAWLQVDHANLSGKVVSLPKR-EDVNLPVNEQ--LIVE 205 Query: 203 FYSR 206 YS+ Sbjct: 206 LYSK 209 >gi|281422226|ref|ZP_06253225.1| ribosomal protein S4 [Prevotella copri DSM 18205] gi|281403731|gb|EFB34411.1| ribosomal protein S4 [Prevotella copri DSM 18205] Length = 201 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 124/208 (59%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFDKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 ++V+G+ VNI S+ K G V+ V++KSK L V+EA+ LA + +Y I + ++ Sbjct: 119 IVVDGKVVNIPSFAVKPGMVVGVREKSKSL-EVIEAA-LAGFNHSKYPWIEWDDNSKSGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ P D+P + Q L+VE YS+ Sbjct: 177 FLHKPER-ADIPENIKEQ--LIVELYSK 201 >gi|72383580|ref|YP_292935.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. NATL2A] gi|90101705|sp|Q46LZ9|RS4_PROMT RecName: Full=30S ribosomal protein S4 gi|72003430|gb|AAZ59232.1| SSU ribosomal protein S4P [Prochlorococcus marinus str. NATL2A] Length = 202 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 121/210 (57%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RS+ PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSHPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++ + SKQLA LE LA +VP ++ ++ + A Sbjct: 117 VTVNGRITDIASYQCKAGDVIAIRDNKASKQLAQANLEFPGLA--NVPPHLELDKTKLSA 174 Query: 178 TFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 S+ D + I + LVVE+YSR Sbjct: 175 KI----SAKTDREWVAIEINELLVVEYYSR 200 >gi|187734944|ref|YP_001877056.1| ribosomal protein S4 [Akkermansia muciniphila ATCC BAA-835] gi|226697794|sp|B2UNG3|RS4_AKKM8 RecName: Full=30S ribosomal protein S4 gi|187424996|gb|ACD04275.1| ribosomal protein S4 [Akkermansia muciniphila ATCC BAA-835] Length = 203 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 118/210 (56%), Gaps = 11/210 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 M++ + K+ RR G L+G K+ + R + PG HG R + K S +G+ L KQK++ Sbjct: 1 MARYTGPRDKVSRRFGVALFGSTKA-LEKRPFPPGQHGMRAGRKKKSDYGVMLAEKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E +FR + EA R RG T L+ LE RLD +VYR F T ARQ V+H Sbjct: 60 FQYG-VLEGQFRKYYAEAARRRGITGDILLQLLELRLDNVVYRLGFSNTRAGARQLVSHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLAS-VLEASQLAERDVPEYISVNHDNMV 176 H+ VNG+ NI SY C+ GDVI V K S+QL + L+ +Q VP+++ + D + Sbjct: 119 HITVNGKKTNIASYSCRPGDVIAVGGKASSQQLVTRFLDLTQATV--VPDWLECDRDKLT 176 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+PS + P I+ L+VEFYSR Sbjct: 177 GKIARVPSKEEIAP---IVNEQLIVEFYSR 203 >gi|71276503|ref|ZP_00652778.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Dixon] gi|71900586|ref|ZP_00682713.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] gi|170729723|ref|YP_001775156.1| 30S ribosomal protein S4 [Xylella fastidiosa M12] gi|226703312|sp|B0U5M2|RS4_XYLFM RecName: Full=30S ribosomal protein S4 gi|71162680|gb|EAO12407.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Dixon] gi|71729643|gb|EAO31747.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] gi|167964516|gb|ACA11526.1| 30S ribosomal protein S4 [Xylella fastidiosa M12] Length = 208 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 105/175 (60%), Gaps = 6/175 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG RKSK S + QLR KQK+K+ YG + E++FR+ +K A +G+T NL+ LE Sbjct: 38 PGQHGAVRKSKLSDYASQLREKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLE 96 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +RLD ++YR F T AARQ V+HR VLVNG+ VN+ SY K GD++ + Q++++ V Sbjct: 97 TRLDNVIYRMGFAVTRPAARQLVSHRGVLVNGKIVNLPSYHVKPGDIVALSQRAQKYLCV 156 Query: 154 LEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E+ + ++ ++ V+ + F +P D+P + L+VE YS+ Sbjct: 157 QESLTIKDQHGSAFSWVEVDSEKFSGVFKALPDR-ADLPSDI--NEALIVELYSK 208 >gi|256832586|ref|YP_003161313.1| 30S ribosomal protein S4 [Jonesia denitrificans DSM 20603] gi|256686117|gb|ACV09010.1| ribosomal protein S4 [Jonesia denitrificans DSM 20603] Length = 208 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + R Y PG HG+ R+ S + ++LR KQ+++ Y + EK+ Sbjct: 12 RLSRALGLALTPKAVKHFEKRPYAPGEHGRSRRRTESDYAVRLREKQRLRAQYA-LREKQ 70 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 R+ + +A G T ++ LE+RLD +V RA F TI ARQ V HRH+LV+G+ V+ Sbjct: 71 MRAAYDKARHLDGLTGETMVELLETRLDALVLRAGFARTILQARQAVVHRHILVDGKLVD 130 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S+R K G I+VK K + A+ A RD VP Y+ V + + A R P+ Sbjct: 131 RPSFRVKPGQTIQVKPKMQAATPYQVAAAGAHRDVLPEVPGYLDVQLEKLTAVLTRKPAR 190 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + PV + NLVVE+Y+R Sbjct: 191 AE---IPVQCEVNLVVEYYAR 208 >gi|253682663|ref|ZP_04863460.1| ribosomal protein S4 [Clostridium botulinum D str. 1873] gi|253562375|gb|EES91827.1| ribosomal protein S4 [Clostridium botulinum D str. 1873] Length = 206 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 10/185 (5%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RSY PG HGQ RK K S +G+QLR KQK ++ YG I E +FR +++A+ RG Sbjct: 30 KCAFARRSYAPGQHGQGRK-KLSNYGVQLREKQKARRIYG-ILEAQFRKYYEKAETMRGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR F + ARQ V H H LVNG+ V+I S++ GDVI V Sbjct: 88 TGENLLKLLEMRLDNVVYRLGFGSSRSEARQLVTHGHFLVNGKKVDIASFKVSAGDVITV 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++KS+ + AE + +P ++ N +N + P+ D+ PV L+V Sbjct: 148 REKSR---GTEKFKTFAENPKTLPAWLQGNVENFEGKVIAEPTR-TDIDVPV--NETLIV 201 Query: 202 EFYSR 206 E YS+ Sbjct: 202 ELYSK 206 >gi|225076419|ref|ZP_03719618.1| hypothetical protein NEIFLAOT_01464 [Neisseria flavescens NRL30031/H210] gi|224952267|gb|EEG33476.1| hypothetical protein NEIFLAOT_01464 [Neisseria flavescens NRL30031/H210] Length = 173 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 6/175 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG HG + K + S +GLQLR KQK+++ YG + E++FR F EA R +G T L+ L Sbjct: 4 APGQHGAK-KPRLSDYGLQLREKQKIRRIYG-VLERQFRRYFAEAARRKGSTGELLLQLL 61 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 ESRLD +VYR F T ARQ V+H+ ++VNG+ VNI S++ K GDV+ V++K+K+ Sbjct: 62 ESRLDNVVYRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQVR 121 Query: 153 VLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + EA LA + +P ++SV+ D + F +P + + LVVEFYS+ Sbjct: 122 IQEALSLATQIGLPSWVSVDADKLEGVFKNMPDRSE---LSGDINEQLVVEFYSK 173 >gi|298346856|ref|YP_003719543.1| 30S ribosomal protein S4 [Mobiluncus curtisii ATCC 43063] gi|298236917|gb|ADI68049.1| 30S ribosomal protein S4 [Mobiluncus curtisii ATCC 43063] Length = 199 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 112/201 (55%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + K R YGPG HG+ R+ S + ++L+ KQ+++ Y I E + Sbjct: 3 RLSRALGMPLTPKAKRYFERRPYGPGEHGRARRRSESDYAVRLKEKQRLRAQYA-IREAQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 F+EA R G T NL+ LE RLD +V RA F T+F ARQ V HRH+LV+G+ V+ Sbjct: 62 LVKTFQEARRMEGQTGDNLVELLEMRLDALVLRAGFGRTMFQARQAVTHRHILVDGKIVD 121 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 SY+ + G ++VK S+ + A++ + RD VP+Y+ V+ + + T R P Sbjct: 122 RPSYKVRPGQTVQVKPTSQVKDPFVVAARGSHRDVLPPVPDYLKVDLEKLRFTLERKP-- 179 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K P+ + LVVE YSR Sbjct: 180 -KREEVPIQCEVQLVVEHYSR 199 >gi|326332226|ref|ZP_08198506.1| ribosomal protein S4 [Nocardioidaceae bacterium Broad-1] gi|325949932|gb|EGD41992.1| ribosomal protein S4 [Nocardioidaceae bacterium Broad-1] Length = 202 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 110/196 (56%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G + R Y PG HG+ R + Y LQLR KQK + YG + EK+F S Sbjct: 13 RRLGVDLVGN-DAAFEKRPYPPGQHGRGRIKESEYL-LQLREKQKARFTYG-VMEKQFAS 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA R G T NL+ LE RLD +VYRA F T ARQ V H H LVNG+ VN+ S Sbjct: 70 YYAEAHRRDGKTGDNLLQLLEGRLDNVVYRAGFARTRRQARQLVVHGHFLVNGKKVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 ++ DVI+V++KS ++ + A + ER VP ++ M ++P + DVP Sbjct: 130 FQVSAHDVIDVREKSLEMTPFIVARETHGERVVPAWLEAVPSRMRILVHQLPVRAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 +Q L+VE+YS+ Sbjct: 190 ----VQEQLIVEYYSK 201 >gi|298370567|ref|ZP_06981882.1| ribosomal protein S4 [Neisseria sp. oral taxon 014 str. F0314] gi|298281177|gb|EFI22667.1| ribosomal protein S4 [Neisseria sp. oral taxon 014 str. F0314] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EA R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEAARRKGSTGELLLQLLESRLDNVVYRLGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+ VNI SY+ K GD+I V++K+K+ + EA LA + +P ++SV+ + + Sbjct: 119 SHKAITVNGQVVNIPSYQVKAGDIIAVREKAKKQVRIQEALNLATQIGLPSWVSVDTNKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LSSDINEQLVVEFYSK 206 >gi|269956478|ref|YP_003326267.1| 30S ribosomal protein S4 [Xylanimonas cellulosilytica DSM 15894] gi|269305159|gb|ACZ30709.1| ribosomal protein S4 [Xylanimonas cellulosilytica DSM 15894] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + R Y PG HG+ R+ S + ++LR KQ+++ Y + EK+ Sbjct: 12 RLSRALGIALTPKAVKHFEKRPYPPGEHGRARRRTESDYAVRLREKQRLRAQYA-LREKQ 70 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 +++ A ++ G T ++ LE+RLD +V RA F TI ARQ V HRH+L++G+ V+ Sbjct: 71 LVKVYENARKTAGLTGEVMVEDLETRLDALVLRAGFARTILQARQTVTHRHILIDGKIVD 130 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S+R K G ++VK KS+ A+ A RD VP Y+ V + + AT R P Sbjct: 131 RPSFRVKPGQTLQVKPKSQTTTPFQVAAAGAHRDVLPAVPGYLEVQLEKLQATLTRRP-- 188 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K PV + LVVEFY+R Sbjct: 189 -KRAEVPVTCEVQLVVEFYAR 208 >gi|15837777|ref|NP_298465.1| 30S ribosomal protein S4 [Xylella fastidiosa 9a5c] gi|26399518|sp|Q9PE53|RS4_XYLFA RecName: Full=30S ribosomal protein S4 gi|9106141|gb|AAF83985.1|AE003951_10 30S ribosomal protein S4 [Xylella fastidiosa 9a5c] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 6/175 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG RKSK S + QLR KQK+K+ YG + E++FR+ +K A +G+T NL+ LE Sbjct: 38 PGQHGAVRKSKLSDYASQLREKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLE 96 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +RLD ++YR F T AARQ V+HR VLVNG+ VN+ SY K GDV+ + Q++++ V Sbjct: 97 TRLDNVIYRMGFAVTRPAARQLVSHRRVLVNGKLVNLPSYHVKPGDVVALSQRAQKYLCV 156 Query: 154 LEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E+ + ++ ++ V+ + F P D+P + L+VE YS+ Sbjct: 157 QESLTIKDQHGSAFSWVEVDSEKFSGVFKAFPDR-ADLPSDI--NEALIVELYSK 208 >gi|219666517|ref|YP_002456952.1| 30S ribosomal protein S4 [Desulfitobacterium hafniense DCB-2] gi|254764585|sp|B8G1Z3|RS4_DESHD RecName: Full=30S ribosomal protein S4 gi|219536777|gb|ACL18516.1| ribosomal protein S4 [Desulfitobacterium hafniense DCB-2] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 4/183 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ R+Y PG HGQ R KP+ +G+QLR KQK+++ YG + EK+FRS + +A+R +G Sbjct: 30 KCAIDRRAYAPGQHGQSRGKKPTEYGIQLREKQKVRRIYG-VQEKQFRSYYDKANRQKGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 NL+ LE RLD +V++ F + ARQ V H H +NGR V+I S+ + GDV+ V Sbjct: 89 VGENLLRLLERRLDNVVFQLGFATSRPEARQLVRHGHFTINGRRVDIPSFLVRVGDVVGV 148 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K+ SK + E +R P+++S++ + T + +P +D+ P+ Q +L+VE Sbjct: 149 KEASKSSPRLKEILSSLDRTPPKWMSLDANAATGTIIALPDR-EDIQLPI--QEHLIVEK 205 Query: 204 YSR 206 YSR Sbjct: 206 YSR 208 >gi|171462904|ref|YP_001797017.1| ribosomal protein S4 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226699102|sp|B1XSS6|RS4_POLNS RecName: Full=30S ribosomal protein S4 gi|171192442|gb|ACB43403.1| ribosomal protein S4 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 207 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLW----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ R S PG G+ S+ S +G QLR KQ Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCRLDNKPGQDGRTSGSRTSDYGNQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + E++FR F EA+R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 61 KVKRIYG-VLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H +L+NG VNI S + K GDV+ +++K+K+ A + E+ L + ++SV+ + Sbjct: 120 SHCAILLNGNPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDVAKL 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P +D+ + +L+VE YSR Sbjct: 180 EGTFKQVPDR-EDISGEI--NESLIVELYSR 207 >gi|269218536|ref|ZP_06162390.1| ribosomal protein S4 [Actinomyces sp. oral taxon 848 str. F0332] gi|269211647|gb|EEZ77987.1| ribosomal protein S4 [Actinomyces sp. oral taxon 848 str. F0332] Length = 197 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/198 (38%), Positives = 113/198 (57%), Gaps = 9/198 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R +G L + + + R Y PG HG R ++K S + ++L+ KQ+++ YG I E + R Sbjct: 5 RSLGIALSPKAERYMQRRPYRPGEHG-RGRTKDSDYSVRLKEKQRLRAQYG-IREAQMRR 62 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 +++EA R+ G + NL+ LE RLD +V RA F TI ARQ V HRH+LV+G+ V+ S Sbjct: 63 VWEEARRAEGLSGENLVELLEMRLDALVLRAGFARTIAQARQVVVHRHLLVDGKIVDRPS 122 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSSLKD 188 +R K G ++VK +S+ A+Q A RD VP Y+ V+ + + T R P K Sbjct: 123 FRVKPGQTVQVKPRSQTSPQFHVAAQGAHRDVLPQVPGYLDVDLEKLRFTLTRRP---KR 179 Query: 189 VPYPVIMQPNLVVEFYSR 206 PVI +VVE YSR Sbjct: 180 AEVPVICDVQMVVEHYSR 197 >gi|115376109|ref|ZP_01463354.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|310821021|ref|YP_003953379.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|115366924|gb|EAU65914.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|309394093|gb|ADO71552.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] Length = 208 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R Y PG HGQ R K S +G+QLR KQK+K+ YG + E +FR + A ++G Sbjct: 30 KCAIERRPYPPGQHGQGR-VKFSGYGVQLREKQKVKRMYG-LLESQFRGYYHRASAAKGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +V+R F T ARQ V H H VNG+ VNI S+ K G +EV Sbjct: 88 TGENLLQQLELRLDNVVFRMGFADTRNEARQLVRHGHFSVNGKKVNIPSFAVKPGSSVEV 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 +KS+++ + EA + + R VP++I ++ + T +P+ +D+ P+ Q L+VE Sbjct: 148 VEKSRKVLRISEALETVDRRGVPQWIDLDKKSFKGTVKTVPNR-EDLTMPI--QEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|331268441|ref|YP_004394933.1| 30S ribosomal protein S4 [Clostridium botulinum BKT015925] gi|329124991|gb|AEB74936.1| ribosomal protein S4 [Clostridium botulinum BKT015925] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 10/185 (5%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RSY PG HGQ RK K S +G+QLR KQK ++ YG I E +FR +++A+ RG Sbjct: 30 KCAFARRSYAPGQHGQGRK-KLSNYGVQLREKQKARRIYG-ILEAQFRKYYEKAETMRGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR F + ARQ V H H LVNG+ V+I S++ GDVI V Sbjct: 88 TGENLLRLLEMRLDNVVYRLGFGSSRSEARQLVTHGHFLVNGKKVDIASFKVSAGDVITV 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++KS+ + AE + +P ++ N +N + P+ D+ PV L+V Sbjct: 148 REKSR---GTEKFKTFAENPKTLPAWLQGNVENFEGKVIAEPTR-TDIDVPV--NETLIV 201 Query: 202 EFYSR 206 E YS+ Sbjct: 202 ELYSK 206 >gi|291562745|emb|CBL41561.1| SSU ribosomal protein S4P [butyrate-producing bacterium SS3/4] Length = 197 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A+R G T NL+ LE RLD Sbjct: 33 KRANKKISEYGLQLREKQKAKFIYG-VLEKPFRNYYDKAERLNGQTGENLMILLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +++R F T ARQ V+H+HVLVNG+ VNI SY K GDV+E+++K+K VLE Sbjct: 92 VIFRLGFARTRKEARQIVDHKHVLVNGKCVNIPSYLVKAGDVVEIREKNKGDNHYKLVLE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A R VP ++ +H+N+ +P+ +++ PV L+VE YS+ Sbjct: 152 TT--AGRLVPAWLESDHENLKGEIKTLPTR-EEIDVPV--NEMLIVELYSK 197 >gi|198273978|ref|ZP_03206510.1| hypothetical protein BACPLE_00114 [Bacteroides plebeius DSM 17135] gi|198273056|gb|EDY97325.1| hypothetical protein BACPLE_00114 [Bacteroides plebeius DSM 17135] Length = 201 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 122/208 (58%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNMFEKAAGMNGITGEILLQSLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + V+G+ VNI S+ K G ++ V++KSK L + A+ LA + +Y + + ++ + Sbjct: 119 ITVDGKVVNIPSFSVKPGQLVGVREKSKSLEVI--ANSLAGFNHSKYPWLEWDENSKIGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P D+P + + +L+VE YS+ Sbjct: 177 LLHVPER-ADIPENI--KEHLIVELYSK 201 >gi|183221323|ref|YP_001839319.1| 30S ribosomal protein S4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911414|ref|YP_001962969.1| 30S ribosomal protein S4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226699081|sp|B0SA21|RS4_LEPBA RecName: Full=30S ribosomal protein S4 gi|226699082|sp|B0SSF3|RS4_LEPBP RecName: Full=30S ribosomal protein S4 gi|167776090|gb|ABZ94391.1| 30S Ribosomal protein S4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779745|gb|ABZ98043.1| 30S ribosomal protein S4 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 210 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 16/207 (7%) Query: 10 KIDRRIGENLW-------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 K+ RR G NL+ + KS + R Y PGL ++K K + +G QLR KQK+K+ Y Sbjct: 10 KLMRREGLNLFLKNSHTLHKEKSSLEKRKYPPGL-PPKKKGKITEYGAQLREKQKVKRAY 68 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G + EK+FR F+EA + G NL+ FLE RLD ++YR F T AR FV HRH+L Sbjct: 69 G-VLEKQFRRYFEEASHTPGIPGENLLQFLERRLDNVLYRMGFAVTRRQARNFVAHRHIL 127 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFV 180 VNG V+I SYR GD IE+++K ++ A + E +LA+ ++SV++ + Sbjct: 128 VNGHRVDICSYRVNIGDKIEIREKFQKSAFIEENIKLAQAINRTASWVSVDYAKFSGEVL 187 Query: 181 RIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P+ D+P ++ ++VE YS+ Sbjct: 188 SLPTRDHIDIP----VKEQVIVELYSK 210 >gi|304372886|ref|YP_003856095.1| 30S ribosomal protein S4 [Mycoplasma hyorhinis HUB-1] gi|304309077|gb|ADM21557.1| 30S ribosomal protein S4 [Mycoplasma hyorhinis HUB-1] gi|330723530|gb|AEC45900.1| 30S ribosomal protein S4 [Mycoplasma hyorhinis MCLD] Length = 205 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 115/212 (54%), Gaps = 13/212 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN--TRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ K RR G ++ K V R Y PG HGQR K+K S +GL L KQK+ Sbjct: 1 MSRYTGPVFKKSRRYGFSILETGKEFVKGKQRKYAPGQHGQR-KTKLSDYGLHLYEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG I+E++FR+ FK+A + G + LESRLD IVYRA F T ARQ VNH Sbjct: 60 RFMYG-INERQFRNTFKKATKKHGVAGTVFLQTLESRLDNIVYRAGFAETRRQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS----KQLASVLEASQLAERDVPEYISVNHDN 174 H L+NG+ NI S GD IE+ K ++ +LEA L + E+I + D Sbjct: 119 GHFLLNGKKANIPSMILSVGDTIELTTKKEGKIRKNVQILEA--LEKNRTAEWIKLEKDK 176 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATF R+P + P ++ +L+VEFYS+ Sbjct: 177 FKATFERLPERKELNPE---IKESLIVEFYSK 205 >gi|302191126|ref|ZP_07267380.1| 30S ribosomal protein S4 [Lactobacillus iners AB-1] gi|309803253|ref|ZP_07697350.1| ribosomal protein S4 [Lactobacillus iners LactinV 11V1-d] gi|309804768|ref|ZP_07698832.1| ribosomal protein S4 [Lactobacillus iners LactinV 09V1-c] gi|309806291|ref|ZP_07700304.1| ribosomal protein S4 [Lactobacillus iners LactinV 03V1-b] gi|309808534|ref|ZP_07702432.1| ribosomal protein S4 [Lactobacillus iners LactinV 01V1-a] gi|309809939|ref|ZP_07703787.1| ribosomal protein S4 [Lactobacillus iners SPIN 2503V10-D] gi|312871661|ref|ZP_07731753.1| ribosomal protein S4 [Lactobacillus iners LEAF 3008A-a] gi|312871931|ref|ZP_07732013.1| ribosomal protein S4 [Lactobacillus iners LEAF 2062A-h1] gi|312873253|ref|ZP_07733309.1| ribosomal protein S4 [Lactobacillus iners LEAF 2052A-d] gi|312874615|ref|ZP_07734639.1| ribosomal protein S4 [Lactobacillus iners LEAF 2053A-b] gi|325911708|ref|ZP_08174115.1| ribosomal protein S4 [Lactobacillus iners UPII 143-D] gi|325913026|ref|ZP_08175399.1| ribosomal protein S4 [Lactobacillus iners UPII 60-B] gi|329921128|ref|ZP_08277651.1| ribosomal protein S4 [Lactobacillus iners SPIN 1401G] gi|308164761|gb|EFO67011.1| ribosomal protein S4 [Lactobacillus iners LactinV 11V1-d] gi|308165878|gb|EFO68097.1| ribosomal protein S4 [Lactobacillus iners LactinV 09V1-c] gi|308167275|gb|EFO69441.1| ribosomal protein S4 [Lactobacillus iners LactinV 03V1-b] gi|308168211|gb|EFO70331.1| ribosomal protein S4 [Lactobacillus iners LactinV 01V1-a] gi|308169727|gb|EFO71772.1| ribosomal protein S4 [Lactobacillus iners SPIN 2503V10-D] gi|311089845|gb|EFQ48265.1| ribosomal protein S4 [Lactobacillus iners LEAF 2053A-b] gi|311091264|gb|EFQ49652.1| ribosomal protein S4 [Lactobacillus iners LEAF 2052A-d] gi|311092508|gb|EFQ50870.1| ribosomal protein S4 [Lactobacillus iners LEAF 2062A-h1] gi|311092886|gb|EFQ51238.1| ribosomal protein S4 [Lactobacillus iners LEAF 3008A-a] gi|325476474|gb|EGC79633.1| ribosomal protein S4 [Lactobacillus iners UPII 143-D] gi|325477706|gb|EGC80845.1| ribosomal protein S4 [Lactobacillus iners UPII 60-B] gi|328935035|gb|EGG31524.1| ribosomal protein S4 [Lactobacillus iners SPIN 1401G] Length = 203 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPGNRTKVSEYGEQLKEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LNERQFRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S++ K G I +K+KSK L V +A + A P +++ + M + Sbjct: 119 HILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALE-ATVSRPAFVTFDESKMTGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEWYNK 201 >gi|153954808|ref|YP_001395573.1| 30S ribosomal protein S4 [Clostridium kluyveri DSM 555] gi|219855268|ref|YP_002472390.1| hypothetical protein CKR_1925 [Clostridium kluyveri NBRC 12016] gi|146347666|gb|EDK34202.1| RpsD2 [Clostridium kluyveri DSM 555] gi|219568992|dbj|BAH06976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 197 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/212 (38%), Positives = 115/212 (54%), Gaps = 21/212 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-----PVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M+ R K K+ RR+G N++G PK+ VN+R HG SK S +G QL K Sbjct: 1 MATRREPKFKLCRRLGVNIYGHPKAMDRVKKVNSR------HG----SKISEYGRQLLEK 50 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K YYG + EK+F+ + A++S+ T L+ LE RLD IVYR F +I +RQ Sbjct: 51 QKIKAYYG-LFEKQFKRYIRRAEKSKNVTGTALLKILECRLDNIVYRIGFGNSIRQSRQM 109 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS-VLEASQLAERDVPEYISVNHDN 174 VNH H+LVN + +NI SY GDVI + QKS+ L + ++P YI N DN Sbjct: 110 VNHGHILVNNKKINIPSYEVHAGDVISLVQKSRNNKEFCFNFLDLRKFELP-YIEKNFDN 168 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P + P+ + VVE YS+ Sbjct: 169 FQGILIRLPEKEE---LPIEVNEIAVVELYSK 197 >gi|297537975|ref|YP_003673744.1| 30S ribosomal protein S4 [Methylotenera sp. 301] gi|297257322|gb|ADI29167.1| ribosomal protein S4 [Methylotenera sp. 301] Length = 205 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG----QRRKSKPSYFGLQLRAKQ 56 MS+ + KI R +G +L G + + R PG HG +RRKS +G++L+ KQ Sbjct: 1 MSRLTGPRLKIMRSLGVDLPGLSRKTIEARPTPPGQHGMKAMRRRKSD---YGVKLQEKQ 57 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ YG ++E++ R + EA + T N + LE RLD +V+RA F P+ +ARQ V Sbjct: 58 KLRFNYG-LTERQMRRLIIEARKGSEPTGDNFLQLLERRLDNVVFRAGFAPSAISARQLV 116 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV 176 H HV++NGRSVNI S R K D I +K S ++ V+E D P+++ + + Sbjct: 117 THGHVILNGRSVNIPSIRVKLADEISLKVTSLKIPLVIETLAKPVLDRPDWLQWDETDKR 176 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 +P + VP+P+ +Q VVE+YS Sbjct: 177 IKVAHLPDA-DQVPFPIDVQQ--VVEYYS 202 >gi|330468292|ref|YP_004406035.1| 30S ribosomal protein S4 [Verrucosispora maris AB-18-032] gi|328811263|gb|AEB45435.1| 30S ribosomal protein S4 [Verrucosispora maris AB-18-032] Length = 202 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 115/201 (57%), Gaps = 7/201 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ R +G L + V R Y PG+HG+ R+ K S + ++L KQ+++ Y ++SE Sbjct: 7 KARLSRALGIPLTRKCVRYVERRPYPPGVHGRSRR-KTSDYQVRLLEKQRLRHQY-NVSE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R F EA R G T +L++ LE RLD +V RA +I+ ARQ V H H V+GR Sbjct: 65 AQLRRTFDEAARRTGKTGESLVTLLEQRLDAVVLRAGMARSIYQARQLVGHGHFTVDGRK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 V+ SYR + G V+ V+Q+S+ L + A AE Y+SV+ + AT +R P+ Sbjct: 125 VDRPSYRLRPGQVVAVRQRSQALPPFQLAAAGAHAEEQPRPYLSVDLSGLRATLLREPAR 184 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 ++V PV+ LVVE+YSR Sbjct: 185 -REV--PVVCDEQLVVEYYSR 202 >gi|166031631|ref|ZP_02234460.1| hypothetical protein DORFOR_01331 [Dorea formicigenerans ATCC 27755] gi|166028608|gb|EDR47365.1| hypothetical protein DORFOR_01331 [Dorea formicigenerans ATCC 27755] Length = 197 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ F++A R G T NL+ LESRLD Sbjct: 33 KRSNRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYFEKAQRMNGMTGDNLMILLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R F T ARQ V+H+HVLVNG+ VNI SY K GD +E+K+ K E + Sbjct: 92 VVFRMGFARTRREARQIVDHKHVLVNGKQVNIPSYLIKAGDTVEIKEAKKSSPRYKEIVE 151 Query: 159 L-AERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VP+++ V+ +N+ T +P+ DVP + L+VE YS+ Sbjct: 152 VTGGRMVPDWLEVDQENLKGTVKELPAREAIDVP----VDEMLIVELYSK 197 >gi|160894729|ref|ZP_02075504.1| hypothetical protein CLOL250_02280 [Clostridium sp. L2-50] gi|156863663|gb|EDO57094.1| hypothetical protein CLOL250_02280 [Clostridium sp. L2-50] Length = 197 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+++ +A++ +G T NL++ LE RLD + Sbjct: 34 RANRKVSEYGLQLREKQKAKFIYG-VLEKPFRNLYAKAEQQKGLTGPNLMTLLELRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 ++R F T ARQ V+H+HVLVNG+SVNI SY+ K GD IE+++KSK L + Sbjct: 93 IFRLGFARTRREARQIVDHKHVLVNGKSVNIPSYQVKAGDKIEIREKSKSLQRYKDIIAA 152 Query: 160 AERD-VPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 E VP +++ + +N+ V P+ + DVP + L+VE YS+ Sbjct: 153 TEGHLVPGWLTADRENLCGEVVEKPNREQIDVP----VNETLIVELYSK 197 >gi|148238927|ref|YP_001224314.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7803] gi|172047783|sp|A5GJA2|RS4_SYNPW RecName: Full=30S ribosomal protein S4 gi|147847466|emb|CAK23017.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7803] Length = 202 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ + S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARRKR-SEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SKQLA LE LA +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKQLAEGNLEFPGLA--NVPPHLELDKPKLNA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 175 KVV---GRCEREWVALEINELLVVEYYSR 200 >gi|283769109|ref|ZP_06342014.1| ribosomal protein S4 [Bulleidia extructa W1219] gi|283104295|gb|EFC05673.1| ribosomal protein S4 [Bulleidia extructa W1219] Length = 200 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 5/177 (2%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+Y PG HG ++ K S +G QLR KQ+++ YG ++E++F ++F +A + G N + Sbjct: 29 RTYAPGQHGPTKRIKLSGYGTQLREKQRIRNMYG-LNERQFHNLFVKASKMDGMAGVNFL 87 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD IVYR F T AARQ VNH H+LV+G+ VNI S K G I +K+KS Sbjct: 88 VLLESRLDNIVYRMGFARTRKAARQLVNHGHILVDGKKVNIPSALIKPGQEISLKEKSLN 147 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 LA V E+ + ++ ++ V+ DN F+R+P ++ + LVVE+Y+R Sbjct: 148 LAIVKESLE-SQISTAAFVEVDKDNKKGKFIRLPDR-NELNQEI--NEALVVEYYNR 200 >gi|259501666|ref|ZP_05744568.1| 30S ribosomal protein S4 [Lactobacillus iners DSM 13335] gi|259166951|gb|EEW51446.1| 30S ribosomal protein S4 [Lactobacillus iners DSM 13335] Length = 208 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 6 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPGNRTKVSEYGEQLKEKQKLRW 64 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 65 MFG-LNERQFRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLVNHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S++ K G I +K+KSK L V +A + A P +++ + M + Sbjct: 124 HILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALE-ATVSRPAFVTFDESKMTGSL 182 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 183 VRLPE--RDEMEPEI-DESLVVEWYNK 206 >gi|317131397|ref|YP_004090711.1| ribosomal protein S4 [Ethanoligenens harbinense YUAN-3] gi|315469376|gb|ADU25980.1| ribosomal protein S4 [Ethanoligenens harbinense YUAN-3] Length = 208 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 127/215 (59%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S K+ RR G+ L+ + K V RSY PG HGQ RK K S +G+QLRA Sbjct: 1 MARYTDSVCKLCRREGQKLFLKGERCYSDKCSVGRRSYAPGQHGQDRK-KVSEYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG + E++FR F+ A+ G T NL+ LE RLD +VYR F + +RQ Sbjct: 60 KQKARRYYG-VLERQFRHYFEIAESKPGITGENLLRLLELRLDNVVYRLGFASSHAQSRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVN 171 V H H +NG+ NI S R + GDV+ VK+ S+ + SV+EA+ A R +P+++ +N Sbjct: 119 MVRHGHFTINGKKANIPSMRVRVGDVVAVKEGSRTNEFIKSVVEAN--ASRPIPKWLEIN 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + T +P+ +D+ V + +L+VE YS+ Sbjct: 177 REALSGTVAVLPNR-EDIDLSV--EEHLIVELYSK 208 >gi|156743922|ref|YP_001434051.1| 30S ribosomal protein S4 [Roseiflexus castenholzii DSM 13941] gi|189045395|sp|A7NR37|RS4_ROSCS RecName: Full=30S ribosomal protein S4 gi|156235250|gb|ABU60033.1| ribosomal protein S4 [Roseiflexus castenholzii DSM 13941] Length = 206 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 113/201 (56%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G + + + + R + PG HG R+ + S +GLQL KQK + YG + E+ Sbjct: 10 KISRRLGIGITEKGQRILAKRPFPPGQHGPSARRRQVSDYGLQLLEKQKARYIYG-VLER 68 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +FR IF++A R G+T L+ LE RLD +VYR F T ARQ V H H+ VNGR Sbjct: 69 QFRRIFEKAQRFPGETGAYLLILLERRLDNVVYRLGFATTRAQARQLVTHGHITVNGRKT 128 Query: 129 NIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 NI SY + G+ I V+ +S++ +++E+ LA+ P+++ +N ++ V +P Sbjct: 129 NIPSYTVRVGETIAVRPESRRRMYFKNLVESGALAKHKAPDWLRLNPADLSGEVVAMPRR 188 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 P + L+VEFYSR Sbjct: 189 EDAEPG---INEQLIVEFYSR 206 >gi|312880344|ref|ZP_07740144.1| SSU ribosomal protein S4P [Aminomonas paucivorans DSM 12260] gi|310783635|gb|EFQ24033.1| SSU ribosomal protein S4P [Aminomonas paucivorans DSM 12260] Length = 208 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 + + R+ PG HG RR +K S +GL+LR KQK++++YG ++E +F I+++A G Sbjct: 30 RCAMAKRNSKPGQHGTRR-TKTSEYGLRLREKQKLRRFYG-LNESQFAQIYEKAAAMPGQ 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T H+ + LE RLD +VYR + AR+ V H H LVNGR ++I S + GDV+ V Sbjct: 88 TGHDFLQLLERRLDNVVYRLGLAVSRRQARELVRHGHFLVNGRKLDIPSAVLRAGDVVSV 147 Query: 144 KQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++KS+ +A + +++ A R VP ++ +N + M V +P + + PV Q LVVE Sbjct: 148 REKSRDVAVLKGNAEVAASRAVPAWLEINGEAMSGRVVTLPVR-EQIEVPVNEQ--LVVE 204 Query: 203 FYSR 206 FY+R Sbjct: 205 FYAR 208 >gi|58337098|ref|YP_193683.1| 30S ribosomal protein S4 [Lactobacillus acidophilus NCFM] gi|75507617|sp|Q5FKX2|RS4_LACAC RecName: Full=30S ribosomal protein S4 gi|58254415|gb|AAV42652.1| 30s ribosomal protein S4 [Lactobacillus acidophilus NCFM] Length = 203 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD+IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFIRAGKIREGQHGINFMILLERRLDSIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K KSK L + +A + A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKDKSKNLQQIRDALE-ATTARPSFVSFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEWYNK 201 >gi|67924299|ref|ZP_00517734.1| Ribosomal protein S4, bacterial and organelle form [Crocosphaera watsonii WH 8501] gi|67853848|gb|EAM49172.1| Ribosomal protein S4, bacterial and organelle form [Crocosphaera watsonii WH 8501] Length = 202 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQGRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLVRYMKKARRATGSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V+VNGR VNI SY+C+ GDVI V+ K S++L ++ LA +VPE++ + + ++ Sbjct: 117 VMVNGRIVNIASYQCRPGDVISVRNKDHSRRLVEANMQYPGLA--NVPEHLEFDKNTLIG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +K + + LVVE+YSR Sbjct: 175 ---KVNDVIKREWVALQINELLVVEYYSR 200 >gi|168187786|ref|ZP_02622421.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund] gi|169294366|gb|EDS76499.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund] Length = 206 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 10/185 (5%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RSY PG HGQ RK K S +G+QLR KQK ++ YG I E +FR +++A+ RG Sbjct: 30 KCAFARRSYAPGQHGQGRK-KLSNYGVQLREKQKARRIYG-ILEAQFRKYYEKAETMRGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VY+ F + ARQ V H H LVNG+ V+I SY+ GDVI V Sbjct: 88 TGENLLKLLEMRLDNVVYKLGFGSSRAEARQLVTHGHFLVNGKKVDIISYQVSAGDVISV 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++KS+ + AE + +P ++ N +N + P+ + D+ PV L+V Sbjct: 148 REKSR---GTEKFKTFAENPKTLPAWLEGNIENFEGKVIAEPTRV-DIDVPV--NETLIV 201 Query: 202 EFYSR 206 E YS+ Sbjct: 202 ELYSK 206 >gi|225849518|ref|YP_002729683.1| 30S ribosomal protein S4 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644198|gb|ACN99248.1| ribosomal protein S4 [Sulfurihydrogenibium azorense Az-Fu1] Length = 204 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 7/175 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMKKYYGDISEK 68 K+ RR+G + G +S R++ PG HG+ + + K S +G++L+ KQK+K YG + E Sbjct: 10 KVSRRLGVFIGGDLES-FQKRNFPPGQHGRTQGRKKLSDYGVRLQEKQKLKFLYGGLRES 68 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +FR F+EA + G+T L+ LE RLD +VYR F T ARQ V H H VNG+ V Sbjct: 69 QFRRYFEEASKKAGNTGVVLLQLLERRLDNVVYRLGFAKTRQQARQLVKHGHFTVNGKKV 128 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVATFV 180 +I SYR GD+IEV++KSK+LA E L RD +P+++ ++ +NM V Sbjct: 129 DIPSYRVDAGDIIEVREKSKKLAIFKE--NLENRDPRSIPKWLELDKENMRGKVV 181 >gi|30248442|ref|NP_840512.1| 30S ribosomal protein S4 [Nitrosomonas europaea ATCC 19718] gi|41017978|sp|Q82X70|RS4A_NITEU RecName: Full=30S ribosomal protein S4 A gi|30138328|emb|CAD84336.1| Ribosomal protein S4:S4 domain [Nitrosomonas europaea ATCC 19718] Length = 208 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K + RR GE L+ + K P+ R+Y PG HGQ+ K + S + +QLR Sbjct: 1 MARNINPKCRQCRREGEKLFLKGDKCFSDKCPIERRNYPPGQHGQK-KVRLSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR+++K AD+ +G T NL+ LESRLD + Y F + ARQ Sbjct: 60 KQKIRRIYG-LLENQFRNVYKRADKQKGVTGDNLLQLLESRLDNVAYNMGFGSSRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H VL+NG+ NI S+ + GD+IE+ + +K + + + A+ R +P ++ V+ D Sbjct: 119 IVRHNCVLLNGKRANIPSHLVEPGDLIEIAEHAKSYLRIKASIEAAKRRSIPSWLEVDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + P D+ + +LVVE YS+ Sbjct: 179 NLKGLYKSKPER-SDLSSTI--NESLVVELYSK 208 >gi|323466846|gb|ADX70533.1| 30S ribosomal protein S4 [Lactobacillus helveticus H10] Length = 203 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G+ N + LE RLD+IVYR T ARQ V+H Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGEHGTNFMILLERRLDSIVYRLGLATTREQARQLVSHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEWYNK 201 >gi|116075050|ref|ZP_01472310.1| 30S ribosomal protein S4 [Synechococcus sp. RS9916] gi|116067247|gb|EAU73001.1| 30S ribosomal protein S4 [Synechococcus sp. RS9916] Length = 202 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 124/211 (58%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQDGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SK+LA LE LA +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKKLAEANLEFPGLA--NVPPHLELDKSKLSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 I S ++ V ++ N LVVE+YSR Sbjct: 175 KV--IGRSEREW---VALEINELLVVEYYSR 200 >gi|260903836|ref|ZP_05912158.1| 30S ribosomal protein S4 [Brevibacterium linens BL2] Length = 199 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 113/201 (56%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + + R Y PG HG+ R+ S + ++L+ KQ+++ YG I E + Sbjct: 3 RVSRALGMPLTPKAEKYFERRPYPPGEHGRARRRNDSDYSVRLKEKQRLRAQYG-IREAQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 +KEA R G T ++ LE RLD +V R+ F TI ARQFV HRH+ V+G+ V+ Sbjct: 62 MLKTYKEASRLSGLTGETMVELLEMRLDALVLRSGFARTIAQARQFVVHRHITVDGQRVD 121 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S+R KEG I+V ++S + A+ +D VP Y++VN + + T +R P Sbjct: 122 RPSFRVKEGQTIQVHERSASMDPFQVAAAGGHKDVLPAVPGYLNVNLEGLQTTLLRRPKR 181 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 ++VP V +Q LVVE YSR Sbjct: 182 -EEVPVTVDVQ--LVVEHYSR 199 >gi|11465685|ref|NP_053829.1| ribosomal protein S4 [Porphyra purpurea] gi|1710705|sp|P51219|RR4_PORPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|1276685|gb|AAC08105.1| 30S ribosomal protein S4 [Porphyra purpurea] Length = 201 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + + R Y PG HGQ+ + KPS + ++L KQK++ Sbjct: 1 MSRYRGPRVRISRRLGD-LPGLSRKAIK-RPYPPGEHGQKPR-KPSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K A + +G T L+ LE RLD ++R PTI AARQ VNH H Sbjct: 58 NYG-LSEKQLFKYVKAAKKLQGSTGQILLQLLEMRLDNTIFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 + +NG+ V+I SY+CK G++I VK + SKQL S L LA ++P ++ +N N+ Sbjct: 117 ICINGKVVSICSYQCKPGELITVKPQESSKQLVESYLAFPGLA--NIPSHLELNKSNLSG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + D + V +Q N LVVE+YSR Sbjct: 175 KI----NGVIDREW-VALQLNELLVVEYYSR 200 >gi|269839290|ref|YP_003323982.1| ribosomal protein S4 [Thermobaculum terrenum ATCC BAA-798] gi|269791020|gb|ACZ43160.1| ribosomal protein S4 [Thermobaculum terrenum ATCC BAA-798] Length = 201 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 121/207 (58%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSY-GPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M K+ +HK+ RR G +++G + R + PG R+ + S +G+QL KQK K Sbjct: 1 MVKKREPRHKVSRRFGVDIYGTGGDSLQRRLHIPPGGFKGGRRRRLSEYGMQLFEKQKAK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG + E++F+ +++A+R G+T HNL+ +E RLD +VYR F T ARQ V H Sbjct: 61 AYYG-VHERQFQRYYQQAERMPGNTGHNLLQLIERRLDNVVYRLGFARTRPMARQLVVHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV VNG+ V+ SY+ K G+VI + +K+ Q+ V+E + + R VP ++ + V Sbjct: 120 HVRVNGQKVDRPSYQVKPGEVITLTEKALQIPVVIEEME-SHRIVPAWL--QREGPVGRV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P ++P P+ +L++ FYSR Sbjct: 177 VRLPER-DEIPEPI--NEDLIIAFYSR 200 >gi|33866226|ref|NP_897785.1| 30S ribosomal protein S4 [Synechococcus sp. WH 8102] gi|41017824|sp|Q7U5K9|RS4_SYNPX RecName: Full=30S ribosomal protein S4 gi|33639201|emb|CAE08209.1| 30S ribosomal protein S4 [Synechococcus sp. WH 8102] Length = 202 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MARYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDV+ ++++ SKQLA LE LA +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVVAIRERKCSKQLAEGNLEFPGLA--NVPTHLELDKAKLSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 175 ---KVTGRCEREWVALEINELLVVEYYSR 200 >gi|282883330|ref|ZP_06291924.1| ribosomal protein S4 [Peptoniphilus lacrimalis 315-B] gi|300813858|ref|ZP_07094163.1| ribosomal protein S4 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281296834|gb|EFA89336.1| ribosomal protein S4 [Peptoniphilus lacrimalis 315-B] gi|300512045|gb|EFK39240.1| ribosomal protein S4 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 198 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 10/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N+ G PK+ + R K + +G QL KQ+++ Sbjct: 1 MAKMMGPRFKLSRRLGLNVCGHPKAMKRAQR-----GSARSDKKLTEYGKQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F+++F EA +++G T NL+SFLE RLD + YR F +I ARQ V H H Sbjct: 56 YYG-LLEKQFKNLFIEAQKAKGQTGPNLVSFLERRLDNLCYRLGFASSIRQARQMVLHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SYRC D I + +K K++ E Y+S N D V Sbjct: 115 ILVNGKKVDIPSYRCDVSDEISLSRKGKKVELFKENFNTNFPVSYPYLSKNED-FKGKLV 173 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +D+ P+ ++ L+VE+YS+ Sbjct: 174 SLPNR-EDI--PIEIEDQLIVEYYSK 196 >gi|291087195|ref|ZP_06345679.2| ribosomal protein S4 [Clostridium sp. M62/1] gi|291075940|gb|EFE13304.1| ribosomal protein S4 [Clostridium sp. M62/1] gi|295092573|emb|CBK78680.1| SSU ribosomal protein S4P [Clostridium cf. saccharolyticum K10] Length = 197 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 11/174 (6%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 + +R K S +GLQLR KQK K YG + EK FR+ + +A R G NL+ LESRL Sbjct: 31 NSKRANKKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKASRMNGQVGTNLMIILESRL 89 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASV 153 D +++R F T RQ V+H+HVLVNG+ VNI SY K GDVIE+K+K S++ V Sbjct: 90 DNVLFRMGFGRTRKETRQIVDHKHVLVNGKCVNIPSYLVKAGDVIEIKEKYKSSQRYKDV 149 Query: 154 LEASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 LE + A R VP ++ V+ +N+ T +P+ + DVP + L+VE YS+ Sbjct: 150 LEVT--AGRLVPAWLEVDQENLRGTVKELPTRDEIDVPVNEV----LIVELYSK 197 >gi|148543735|ref|YP_001271105.1| 30S ribosomal protein S4 [Lactobacillus reuteri DSM 20016] gi|194468296|ref|ZP_03074282.1| ribosomal protein S4 [Lactobacillus reuteri 100-23] gi|227363285|ref|ZP_03847417.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM2-3] gi|227544238|ref|ZP_03974287.1| 30S ribosomal protein S4 [Lactobacillus reuteri CF48-3A] gi|300908234|ref|ZP_07125700.1| 30S ribosomal protein S4 [Lactobacillus reuteri SD2112] gi|325682107|ref|ZP_08161625.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM4-1A] gi|172048234|sp|A5VIU4|RS4_LACRD RecName: Full=30S ribosomal protein S4 gi|148530769|gb|ABQ82768.1| SSU ribosomal protein S4P [Lactobacillus reuteri DSM 20016] gi|194453149|gb|EDX42047.1| ribosomal protein S4 [Lactobacillus reuteri 100-23] gi|227071741|gb|EEI10032.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM2-3] gi|227185791|gb|EEI65862.1| 30S ribosomal protein S4 [Lactobacillus reuteri CF48-3A] gi|300894661|gb|EFK88017.1| 30S ribosomal protein S4 [Lactobacillus reuteri SD2112] gi|324978751|gb|EGC15700.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM4-1A] Length = 201 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R+Y PG HG+ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRVSRRLGVSLSGTGKE-LARRAYAPGDHGRDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G +I V+ KSK L + A + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQIIAVRDKSKNLDIIKNAVE-AVVSRPSYVDFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ +D+ + L+VEFY++ Sbjct: 178 NRIPAR-EDMNADI--DEALIVEFYNK 201 >gi|300361435|ref|ZP_07057612.1| 30S ribosomal protein S4 [Lactobacillus gasseri JV-V03] gi|300354054|gb|EFJ69925.1| 30S ribosomal protein S4 [Lactobacillus gasseri JV-V03] Length = 208 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 6 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPNNRAKVSEYGQQLKEKQKLRW 64 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F+++F A + R G N ++ LE RLD IVYR T ARQ VNH Sbjct: 65 MFG-LNERQFQNLFIRAGKIREGKHGVNFMALLERRLDNIVYRLGLASTREQARQLVNHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I ++ KSK L V +A A P ++S + M T Sbjct: 124 HILVDGKRVDIPSYEVKVGQEISLRDKSKNLQQVKDALD-AVVSRPPFVSFDDSKMTGTL 182 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P + + L+VE+Y++ Sbjct: 183 VRLPG--RDEMEPEVDEA-LIVEWYNK 206 >gi|225165488|ref|ZP_03727314.1| ribosomal protein S4 [Opitutaceae bacterium TAV2] gi|224800265|gb|EEG18669.1| ribosomal protein S4 [Opitutaceae bacterium TAV2] Length = 202 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR + L+G K+ R Y PG HG + + K S + L KQK++ Sbjct: 1 MARYTGPTTRLSRRFNQPLFGATKA-YEKRPYPPGQHGPKLRRKVSEYAAGLNEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F+ A R RG T + LE+RLD+I+Y F + AARQ V H H Sbjct: 60 VYG-LLERQFRRTFEAAKRERGVTGERFLQLLETRLDSIIYLLGFARSRAAARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNG V+I SY + GD +E+K S+QLA LE ++ R+VP ++++N + A Sbjct: 119 VRVNGHKVDIASYAVQVGDELEIKNAAGSRQLAQRNLEETR--ARNVPGWLTLNAEAFKA 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ + P + L+VEFYSR Sbjct: 177 VVNRLPTREEMAP---DINEQLIVEFYSR 202 >gi|147676683|ref|YP_001210898.1| 30S ribosomal protein S4 [Pelotomaculum thermopropionicum SI] gi|189045389|sp|A5D5E8|RS4_PELTS RecName: Full=30S ribosomal protein S4 gi|146272780|dbj|BAF58529.1| ribosomal protein S4 and related proteins [Pelotomaculum thermopropionicum SI] Length = 208 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 120/214 (56%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR G L+ + PK ++ RSY PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGSVCRLCRREGLKLYLKGDRCYTPKCAIDRRSYAPGQHGQGRK-KVSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR F++A+R G T NL+ LE RLD ++YR + ARQ Sbjct: 60 KQKARRIYG-ILESQFRRYFEKAERQPGITGENLLRLLERRLDNVIYRLGLGASRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H VNGR VNI SY K GDVI V+ +SK+ + E + A+R P ++ D Sbjct: 119 LVRHGHFTVNGRRVNIPSYLVKPGDVIAVRDQSKESPRIKELLERAADRTPPAWLEYEAD 178 Query: 174 NMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 A +P+ + D P +Q +L+VE YSR Sbjct: 179 QARARVAALPARDQIDAP----VQEHLIVELYSR 208 >gi|303240945|ref|ZP_07327456.1| ribosomal protein S4 [Acetivibrio cellulolyticus CD2] gi|302591531|gb|EFL61268.1| ribosomal protein S4 [Acetivibrio cellulolyticus CD2] Length = 208 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K V+ R Y PG HGQ RK K S +G+QLR Sbjct: 1 MARYTDASCRLCRREGEKLFLKGERCYTNKCSVSRRGYAPGQHGQGRK-KLSEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG + E +FR F+ A +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKARRYYG-VLEGQFRKYFEMAVSKKGVTGDNLLQLLELRLDNVVYRLGLATSRPEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNG+ VNI SY K GD I V +KSK + + + + VP+++ ++ + Sbjct: 119 LVRHGHFTVNGKKVNIPSYLTKLGDAIAVVEKSKSSPKIKAIADITSGKAVPKWLELDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + V +PS +DV P ++ NL+VE YS+ Sbjct: 179 NLTSKIVALPSR-EDVDLP--LKENLIVELYSK 208 >gi|86606184|ref|YP_474947.1| 30S ribosomal protein S4 [Synechococcus sp. JA-3-3Ab] gi|123506364|sp|Q2JUD6|RS4_SYNJA RecName: Full=30S ribosomal protein S4 gi|86554726|gb|ABC99684.1| ribosomal protein S4 [Synechococcus sp. JA-3-3Ab] Length = 203 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 114/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGE-NLWGRP-KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ + KI RR G +L G K P NT PG+HG RK K S + ++L KQK+ Sbjct: 1 MSRYTGPRLKIIRRFGGLDLPGLTRKRPKNTNP--PGMHGAERKKK-SEYAIRLEEKQKV 57 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SE++ ++A RS+G T L+ LE RLD IV+R PTI AARQ V+H Sbjct: 58 RLNYG-VSERQMLRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSH 116 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+ VNGR V I SY CK GDVI V+ K V ++ +P+Y+ + + + Sbjct: 117 GHIEVNGRKVTIPSYGCKVGDVITVRNKESSRKLVAAYAEYPGLFLPDYLEFDKEKLRGR 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + + PV LVVEFYSR Sbjct: 177 IKELPPR-EQICAPV--NELLVVEFYSR 201 >gi|213856915|ref|ZP_03384155.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 167 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 7/166 (4%) Query: 8 KHKIDRRIGENLWGRPK-SPVNTR---SYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + ++T+ PG HG R K + S +G+QLR KQK+++ YG Sbjct: 4 KLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHGAR-KPRLSDYGVQLREKQKVRRIYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 63 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYI 168 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ Sbjct: 122 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 167 >gi|227892659|ref|ZP_04010464.1| ribosomal protein S4 [Lactobacillus ultunensis DSM 16047] gi|227865530|gb|EEJ72951.1| ribosomal protein S4 [Lactobacillus ultunensis DSM 16047] Length = 203 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFARAGKIREGQHGVNFMILLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G V+ +K+ SK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQVVGLKENSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEYYNK 201 >gi|291298741|ref|YP_003510019.1| 30S ribosomal protein S4 [Stackebrandtia nassauensis DSM 44728] gi|290567961|gb|ADD40926.1| ribosomal protein S4 [Stackebrandtia nassauensis DSM 44728] Length = 208 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 102/184 (55%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ +R + PG HG+ R + Y LQLR KQK K+ YG + EK+F + +KEA+R G Sbjct: 30 KCPLESRPFPPGQHGRGRPKETEYL-LQLREKQKAKRTYG-VLEKQFSNYYKEANRRSGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LESRLD +VYRA F + ARQ V H H +VNGR VNI SYR D++EV Sbjct: 88 TGEELLKILESRLDNVVYRAGFAKSRDMARQLVLHGHFIVNGRKVNIPSYRVTAKDIVEV 147 Query: 144 KQKSKQLAS-VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + KS ++ V+ ++ E+ P ++ M +P +Q L+VE Sbjct: 148 RPKSVEMTPFVVARAEAGEKKTPAWLESIPSKMKILVHNLPERQS---IDTQVQEQLIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|329667577|gb|AEB93525.1| 30S ribosomal protein S4 [Lactobacillus johnsonii DPC 6026] Length = 203 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPNNRAKVSEYGQQLKEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F+++F A + R G N ++ LE RLD IVYR T ARQ VNH Sbjct: 60 MFG-LNERQFQNLFIRAGKIREGKHGVNFMALLERRLDNIVYRLGLASTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I ++ KSK L V +A A P ++S + M T Sbjct: 119 HILVDGKRVDIPSYEVKVGQEISLRDKSKNLQQVKDALN-AVVSRPPFVSFDDSKMTGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P + + L+VE+Y++ Sbjct: 178 VRLPE--RDEMEPEVDEA-LIVEWYNK 201 >gi|227903670|ref|ZP_04021475.1| 30S ribosomal protein S4 [Lactobacillus acidophilus ATCC 4796] gi|227868557|gb|EEJ75978.1| 30S ribosomal protein S4 [Lactobacillus acidophilus ATCC 4796] Length = 235 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 33 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 91 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD+IVYR T ARQ VNH Sbjct: 92 MYG-LNERQFRTLFIRAGKIREGQHGINFMILLERRLDSIVYRLGLATTREQARQLVNHG 150 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K KSK L + +A + A P ++S + + M T Sbjct: 151 HITVDGKRVDIPSYEVSVGQTIGLKDKSKNLQQIRDALE-ATTARPSFVSFDENKMEGTL 209 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 210 VRLPE--RDEMEPEI-DESLVVEWYNK 233 >gi|108759189|ref|YP_634922.1| 30S ribosomal protein S4 [Myxococcus xanthus DK 1622] gi|122980658|sp|Q1CXF1|RS4B_MYXXD RecName: Full=30S ribosomal protein S4 B gi|108463069|gb|ABF88254.1| ribosomal protein S4 [Myxococcus xanthus DK 1622] Length = 210 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLW-----GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ + K+ RR+G L K PV R Y PG HG ++ S F +LR K Sbjct: 1 MARDLGPRGKMCRRLGIPLSRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K YYG + EK+ R++F+EA R+ G+T L+ LESRLD++V RA +I ARQF Sbjct: 61 QKLKLYYG-LMEKQCRAVFQEASRAPGNTGTVLLQLLESRLDSLVLRAGLATSIRQARQF 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDN 174 V H ++ V+G+ +I S+R K G + ++LA V E+ S++ R VP Y+ V + Sbjct: 120 VRHGYLHVDGKRADIPSFRVKPGSEVRFHAAHQKLAVVQESFSRMKSRSVPAYVQVLGEG 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR+P + PV + +VE+Y++ Sbjct: 180 EGLRYVRLPEREE---IPVDVNEPFIVEYYAQ 208 >gi|42518876|ref|NP_964806.1| 30S ribosomal protein S4 [Lactobacillus johnsonii NCC 533] gi|227889735|ref|ZP_04007540.1| 30S ribosomal protein S4 [Lactobacillus johnsonii ATCC 33200] gi|238853696|ref|ZP_04644064.1| ribosomal protein S4 [Lactobacillus gasseri 202-4] gi|268319727|ref|YP_003293383.1| ribosomal protein S4 [Lactobacillus johnsonii FI9785] gi|282851624|ref|ZP_06260989.1| ribosomal protein S4 [Lactobacillus gasseri 224-1] gi|311110502|ref|ZP_07711899.1| ribosomal protein S4 [Lactobacillus gasseri MV-22] gi|61215653|sp|Q74K05|RS4_LACJO RecName: Full=30S ribosomal protein S4 gi|152060955|sp|Q042M7|RS4_LACGA RecName: Full=30S ribosomal protein S4 gi|41583162|gb|AAS08772.1| 30S ribosomal protein S4 [Lactobacillus johnsonii NCC 533] gi|227849599|gb|EEJ59685.1| 30S ribosomal protein S4 [Lactobacillus johnsonii ATCC 33200] gi|238833734|gb|EEQ26003.1| ribosomal protein S4 [Lactobacillus gasseri 202-4] gi|262398102|emb|CAX67116.1| ribosomal protein S4 [Lactobacillus johnsonii FI9785] gi|282557592|gb|EFB63189.1| ribosomal protein S4 [Lactobacillus gasseri 224-1] gi|311065656|gb|EFQ45996.1| ribosomal protein S4 [Lactobacillus gasseri MV-22] Length = 203 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPNNRAKVSEYGQQLKEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F+++F A + R G N ++ LE RLD IVYR T ARQ VNH Sbjct: 60 MFG-LNERQFQNLFIRAGKIREGKHGVNFMALLERRLDNIVYRLGLASTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I ++ KSK L V +A A P ++S + M T Sbjct: 119 HILVDGKRVDIPSYEVKVGQEISLRDKSKNLQQVKDALD-AVVSRPPFVSFDDSKMTGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P + + L+VE+Y++ Sbjct: 178 VRLPE--RDEMEPEVDEA-LIVEWYNK 201 >gi|89893244|ref|YP_516731.1| 30S ribosomal protein S4 [Desulfitobacterium hafniense Y51] gi|122483915|sp|Q250K5|RS4_DESHY RecName: Full=30S ribosomal protein S4 gi|89332692|dbj|BAE82287.1| 30S ribosomal protein S4 [Desulfitobacterium hafniense Y51] Length = 208 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 112/183 (61%), Gaps = 4/183 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ R+Y PG HGQ R KP+ +G+QLR KQK+++ YG + EK+FRS + +A+R +G Sbjct: 30 KCAIDRRAYAPGQHGQSRGKKPTEYGIQLREKQKVRRIYG-VQEKQFRSYYDKANRQKGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 NL+ LE RLD +V++ F + ARQ V H H +NGR V+I S+ + GDV+ V Sbjct: 89 VGENLLRLLERRLDNVVFQLGFATSRPEARQLVRHGHFTINGRRVDIPSFLVRVGDVVGV 148 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K+ SK + E +R P++++++ + T + +P +D+ P+ Q +L+VE Sbjct: 149 KEASKSSPRLKEILSSLDRTPPKWMNLDANAATGTIIALPDR-EDIQLPI--QEHLIVEK 205 Query: 204 YSR 206 YSR Sbjct: 206 YSR 208 >gi|184153141|ref|YP_001841482.1| 30S ribosomal protein S4 [Lactobacillus reuteri JCM 1112] gi|226699080|sp|B2G6C0|RS4_LACRJ RecName: Full=30S ribosomal protein S4 gi|183224485|dbj|BAG25002.1| 30S ribosomal protein S4 [Lactobacillus reuteri JCM 1112] Length = 201 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R+Y PG HG+ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRVSRRLGVSLSGTVKE-LARRAYAPGDHGRDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G +I V+ KSK L + A + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQIIAVRDKSKNLDIIKNAVE-AVVSRPSYVDFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ +D+ + L+VEFY++ Sbjct: 178 NRIPAR-EDMNADI--DEALIVEFYNK 201 >gi|118444508|ref|YP_877226.1| 30S ribosomal protein S4 [Clostridium novyi NT] gi|152060917|sp|A0PXX4|RS4A_CLONN RecName: Full=30S ribosomal protein S4 A gi|118134964|gb|ABK62008.1| ribosomal protein S4 [Clostridium novyi NT] Length = 206 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 10/185 (5%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RSY PG HGQ RK K S +G+QLR KQK ++ YG I E +FR +++A+ RG Sbjct: 30 KCAFARRSYAPGQHGQGRK-KLSNYGVQLREKQKARRIYG-ILEAQFRKYYEKAETMRGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VY+ F + ARQ V H H LVNG+ V+I SY+ GDVI V Sbjct: 88 TGENLLKLLEMRLDNVVYKLGFGSSRAEARQLVTHGHFLVNGKKVDIISYQVSAGDVISV 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++KS+ + AE + +P ++ N +N + P+ D+ PV L+V Sbjct: 148 REKSR---GTEKFKTFAENPKTLPAWLEGNIENFEGKVIAEPTR-ADIDVPV--NETLIV 201 Query: 202 EFYSR 206 E YS+ Sbjct: 202 ELYSK 206 >gi|260438189|ref|ZP_05792005.1| ribosomal protein S4 [Butyrivibrio crossotus DSM 2876] gi|292809379|gb|EFF68584.1| ribosomal protein S4 [Butyrivibrio crossotus DSM 2876] Length = 197 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 11/171 (6%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+ FK A++ G T NL++ LE RLD + Sbjct: 34 RANKKVSEYGLQLREKQKAKFIYG-VLEKPFRNYFKRAEKMNGMTGDNLMTLLELRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEA 156 ++R T ARQ V+H+HVLVNG+ VNI SY GD IE+K+K+K + +LE Sbjct: 93 IFRLGLARTRKEARQIVDHKHVLVNGKCVNIPSYLVNVGDSIEIKEKAKSSQRYKDILEV 152 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ + DN+ PS + DVP + L+VE YS+ Sbjct: 153 T--GGRLVPEWLDADQDNLKGVVKAAPSRDMIDVP----VNEMLIVELYSK 197 >gi|307328057|ref|ZP_07607238.1| ribosomal protein S4 [Streptomyces violaceusniger Tu 4113] gi|306886362|gb|EFN17367.1| ribosomal protein S4 [Streptomyces violaceusniger Tu 4113] Length = 208 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 105/192 (54%), Gaps = 22/192 (11%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ R Y PG HG R ++K S + LQLR KQK + YG + EK+FR + EA++ G Sbjct: 30 KCPIEIRPYPPGEHG-RGRTKDSEYLLQLREKQKATRIYG-VLEKQFRGYYAEANKKSGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE+RLD +VYRA F + ARQ V H H+ VNGR +I S R D+IEV Sbjct: 88 TGENLLRILETRLDNVVYRAGFAKSRDHARQLVRHGHITVNGRKTDIPSARVTVNDIIEV 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPV--------I 194 + KS+ L A ++ ER VP ++ IPS L+ + + + Sbjct: 148 RTKSRTLTPFQVAQAEAGERTVPAWLEA-----------IPSQLRILVHSMPERQVIDTQ 196 Query: 195 MQPNLVVEFYSR 206 +Q L+VE YS+ Sbjct: 197 VQEQLIVELYSK 208 >gi|154505142|ref|ZP_02041880.1| hypothetical protein RUMGNA_02655 [Ruminococcus gnavus ATCC 29149] gi|153794621|gb|EDN77041.1| hypothetical protein RUMGNA_02655 [Ruminococcus gnavus ATCC 29149] Length = 181 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 17 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAKQMEGMTGENLMILLESRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLE 155 +++R F T ARQ V+H+HVLVNG+ VNI SY K GDVIE+K+K K +LE Sbjct: 76 VMFRMGFARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDVIEIKEKHKDCQRYKDILE 135 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + +P+++ V+ +N+ T +PS DVP + L+VE YS+ Sbjct: 136 VT--GGNMIPDWLEVDAENLKGTVKELPSREAIDVP----VDEMLIVELYSK 181 >gi|87125591|ref|ZP_01081436.1| 30S ribosomal protein S4 [Synechococcus sp. RS9917] gi|86166891|gb|EAQ68153.1| 30S ribosomal protein S4 [Synechococcus sp. RS9917] Length = 202 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SK+LA LE LA +VP ++ ++ + A Sbjct: 117 VAVNGRVTDIASYQCKAGDVITIRERKGSKKLAEGNLEFPGLA--NVPPHLELDKTKLSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 175 KVI---GRCEREWVALEINELLVVEYYSR 200 >gi|325663035|ref|ZP_08151485.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086642|ref|ZP_08335719.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470489|gb|EGC73719.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409808|gb|EGG89243.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 197 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ F +A + G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYFAKAQKMNGMTGDNLMILLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +V+R T ARQ V+H+HVLVNG+ VNI SY K GDVIE+K+K+K + +LE Sbjct: 92 VVFRLGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDVIEIKEKNKGSQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIP-SSLKDVPYPVIMQPNLVVEFYSR 206 + R VP+++ + +N+ T +P DVP + L+VE YS+ Sbjct: 152 VT--GGRMVPDWLEADAENLKGTVKELPLREAIDVP----VDEMLIVELYSK 197 >gi|11465479|ref|NP_045130.1| ribosomal protein S4 [Cyanidium caldarium] gi|14195190|sp|Q9TLY7|RR4A_CYACA RecName: Full=30S ribosomal protein S4, chloroplastic gi|6466382|gb|AAF12964.1|AF022186_87 unknown [Cyanidium caldarium] Length = 202 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+GE K N +Y PG + + S + ++L+ KQK++ Sbjct: 1 MSRYTGPKIRIIRRLGELPALTTKKVKN--NYPPGREWSTNE-ELSEYAIRLQEKQKIRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+EK+ R K+A +SRG T L++ LE RLD IV RA PTI A+RQ V+H+H Sbjct: 58 NYG-INEKQLRRYVKKAKKSRGSTGSYLLNLLEMRLDNIVLRAGLAPTIAASRQLVSHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQ--KSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 + VN + VNI S++C GD I VK+ KS+QL L + + + P+Y+ VN DNM A Sbjct: 117 IEVNNKIVNIPSFQCSIGDTIHVKKSNKSRQLID-LNSRRDTTKFFPKYLEVNKDNMGA- 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+ ++ + + LVVEFYSR Sbjct: 175 --RVVKTMDKQDVNLTINELLVVEFYSR 200 >gi|225026390|ref|ZP_03715582.1| hypothetical protein EUBHAL_00639 [Eubacterium hallii DSM 3353] gi|224956279|gb|EEG37488.1| hypothetical protein EUBHAL_00639 [Eubacterium hallii DSM 3353] Length = 197 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 101/171 (59%), Gaps = 11/171 (6%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+ + A+R +G T NL+ LESRLD + Sbjct: 34 RSSRKISEYGLQLREKQKAKFIYG-VLEKPFRNYYATAERMKGLTGPNLMVLLESRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLEA 156 V+R F T ARQ V H+HVLVNG+ VNI SYR K GDV+E+K+ K + ++EA Sbjct: 93 VFRMGFARTRKEARQIVGHKHVLVNGKCVNIPSYRIKAGDVVEIKENKKTMQRYKDIVEA 152 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + VP ++ + + + T +PS + DVP + L+VE YS+ Sbjct: 153 T--GGVLVPAWLDADIEELKGTVKELPSRDMIDVP----VNETLIVELYSK 197 >gi|134103232|ref|YP_001108893.1| 30S ribosomal protein S4 [Saccharopolyspora erythraea NRRL 2338] gi|291007976|ref|ZP_06565949.1| 30S ribosomal protein S4 [Saccharopolyspora erythraea NRRL 2338] gi|152112258|sp|A4FPJ3|RS4_SACEN RecName: Full=30S ribosomal protein S4 gi|133915855|emb|CAM05968.1| 30S ribosomal protein S4 [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 115/206 (55%), Gaps = 13/206 (6%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 + R+S + K+D G+ + R R Y PG HG+ R + Y LQL+ KQK K Sbjct: 8 ATRKSRRLKVDLVGGDQAFER-------RPYPPGQHGRARIKETEYL-LQLQEKQKAKFT 59 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG + E++FRS ++EA+R G T NL+ LE RLD +VYRA T ARQ V+H H Sbjct: 60 YG-VLERQFRSYYEEANRRPGKTGDNLLQVLECRLDNVVYRAGLARTRRMARQLVSHGHF 118 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFV 180 VNG+ VNI SY+ + D+I+VKQKS + A + + ER VP ++ V N+ Sbjct: 119 TVNGKKVNIPSYQVSKWDIIDVKQKSLGTTPFIIAKETIGERPVPAWLQVVPSNLRILVH 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P + + PV Q L+VE YS+ Sbjct: 179 QRPERAQ-IDTPVTEQ--LIVELYSK 201 >gi|149192393|ref|ZP_01870594.1| 30S ribosomal protein S4 [Vibrio shilonii AK1] gi|148833784|gb|EDL50820.1| 30S ribosomal protein S4 [Vibrio shilonii AK1] Length = 172 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 106/165 (64%), Gaps = 6/165 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHGARR-GRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE 161 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ A + A ++A+ Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAD 163 >gi|116629861|ref|YP_815033.1| 30S ribosomal protein S4 [Lactobacillus gasseri ATCC 33323] gi|116095443|gb|ABJ60595.1| SSU ribosomal protein S4P [Lactobacillus gasseri ATCC 33323] Length = 224 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 22 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPNNRAKVSEYGQQLKEKQKLRW 80 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F+++F A + R G N ++ LE RLD IVYR T ARQ VNH Sbjct: 81 MFG-LNERQFQNLFIRAGKIREGKHGVNFMALLERRLDNIVYRLGLASTREQARQLVNHG 139 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I ++ KSK L V +A A P ++S + M T Sbjct: 140 HILVDGKRVDIPSYEVKVGQEISLRDKSKNLQQVKDALD-AVVSRPPFVSFDDSKMTGTL 198 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P + + L+VE+Y++ Sbjct: 199 VRLPE--RDEMEPEVDEA-LIVEWYNK 222 >gi|331004148|ref|ZP_08327628.1| 30S ribosomal protein S4 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411558|gb|EGG90968.1| 30S ribosomal protein S4 [Lachnospiraceae oral taxon 107 str. F0167] Length = 197 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 108/190 (56%), Gaps = 16/190 (8%) Query: 29 TRSYG--PGLHGQRRKS---------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 RS G PG G +KS K S +GLQLR KQK K YG + EK FR+ + +A Sbjct: 12 CRSLGLEPGFLGIDKKSNRDTKRANRKLSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKA 70 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 +R +G NL+ LE RLD +V+R T RQ V+H+HVLVNG+ VNI SY K Sbjct: 71 ERMKGQVGENLMVLLERRLDNVVFRMGLGRTRKETRQIVDHKHVLVNGKCVNIPSYLVKA 130 Query: 138 GDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 GDVIE+K+K++ A E + A R VP +I + +N+ T +P+ +++ PV Sbjct: 131 GDVIEIKEKARSSARYKEVVESTAGRIVPAWIDADLENLKGTVKSLPTR-EEIDVPV--D 187 Query: 197 PNLVVEFYSR 206 L+VE YS+ Sbjct: 188 ELLIVELYSK 197 >gi|87302988|ref|ZP_01085792.1| 30S ribosomal protein S4 [Synechococcus sp. WH 5701] gi|87282484|gb|EAQ74443.1| 30S ribosomal protein S4 [Synechococcus sp. WH 5701] Length = 202 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + R+Y PG HGQ R+ + Y ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKSAK-RAYPPGQHGQARRKRSEY-AIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD I +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNICFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 + VNGR V++ SY+C+ GDVI V+++ S+QLA LE LA ++P + ++ + A Sbjct: 117 ITVNGRVVDVPSYQCRAGDVIVVRERKASRQLAEGNLEFPGLA--NIPPNLELDKNKFTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVEFYSR Sbjct: 175 ---KVNGRIEREWVALEINELLVVEFYSR 200 >gi|291549394|emb|CBL25656.1| SSU ribosomal protein S4P [Ruminococcus torques L2-14] Length = 197 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 103/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAKQQEGMTGENLMIILESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +V+R T ARQ V+H+HVLVNG+ VNI SY K GDVIE+K+ S++ +LE Sbjct: 92 VVFRLGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDVIEIKENKKGSQRYKEILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A+ A VPE++ + +N+ T +P+ DVP + L+VE YS+ Sbjct: 152 AT--AGNMVPEWLEADAENLRGTVKELPNREAIDVP----VDEMLIVELYSK 197 >gi|315653729|ref|ZP_07906649.1| 30S ribosomal protein S4 [Lactobacillus iners ATCC 55195] gi|315489091|gb|EFU78733.1| 30S ribosomal protein S4 [Lactobacillus iners ATCC 55195] Length = 208 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 6 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPGNRTKVSEYGEQLKEKQKLRW 64 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E+++R++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 65 MFG-LNERQYRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLVNHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S++ K G I +K+KSK L V +A + A P +++ + M + Sbjct: 124 HILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALE-ATVSRPAFVTFDESKMTGSL 182 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 183 VRLPE--RDEMEPEI-DESLVVEWYNK 206 >gi|225376437|ref|ZP_03753658.1| hypothetical protein ROSEINA2194_02079 [Roseburia inulinivorans DSM 16841] gi|225211813|gb|EEG94167.1| hypothetical protein ROSEINA2194_02079 [Roseburia inulinivorans DSM 16841] Length = 197 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK F + ++ AD+ +G T NL++ LESRLD Sbjct: 33 KRANKKMSEYGLQLREKQKAKFIYG-VLEKPFHNYYERADQMKGMTGQNLMTILESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R F T ARQ V+H+ V VNG+ VNI SY K GDVIE+K+K+K + + + + Sbjct: 92 VVFRLGFARTRKEARQIVDHKFVTVNGKQVNIPSYLVKAGDVIEIKEKNKNIQRMKDIVE 151 Query: 159 L-AERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + R VP+++ V+ + + T +PS + DVP + L+VE YS+ Sbjct: 152 VTGGRLVPDWLEVDAEKLQGTVKELPSREQIDVP----VDEMLIVELYSK 197 >gi|331091640|ref|ZP_08340474.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403397|gb|EGG82956.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 2_1_46FAA] Length = 197 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ F +A + G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYFAKASKMNGMTGDNLMILLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +V+R T ARQ V+H+HVLVNG+ VNI SY K GD IE+K+K S++ +LE Sbjct: 92 VVFRMGLARTRREARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKEKHKGSQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIP-SSLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ V+ +N+ + +P DVP + L+VE YS+ Sbjct: 152 VT--GGRLVPEWLDVDAENLKGSVKELPLREAIDVP----VDEMLIVELYSK 197 >gi|315038024|ref|YP_004031592.1| 30S ribosomal protein S4 [Lactobacillus amylovorus GRL 1112] gi|325956476|ref|YP_004291888.1| 30S ribosomal protein S4 [Lactobacillus acidophilus 30SC] gi|312276157|gb|ADQ58797.1| 30S ribosomal protein S4 [Lactobacillus amylovorus GRL 1112] gi|325333041|gb|ADZ06949.1| 30S ribosomal protein S4 [Lactobacillus acidophilus 30SC] gi|327183304|gb|AEA31751.1| 30S ribosomal protein S4 [Lactobacillus amylovorus GRL 1118] Length = 203 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFARAGKIREGQHGVNFMILLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M + Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P +D P I +LVVE+Y++ Sbjct: 178 VRLPE--RDEMEPEI-DESLVVEYYNK 201 >gi|189460709|ref|ZP_03009494.1| hypothetical protein BACCOP_01356 [Bacteroides coprocola DSM 17136] gi|189432668|gb|EDV01653.1| hypothetical protein BACCOP_01356 [Bacteroides coprocola DSM 17136] Length = 201 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNTRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNMFEKAASMNGITGEILLQSLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVAT 178 + V+G+ VNI SY K G ++ V++KSK L V A+ LA + +Y + + ++ Sbjct: 119 ITVDGQVVNIPSYSVKPGQLVGVREKSKSLEVV--ANSLAGFNHSKYPWLEWDENSKTGK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P D+P + + +L+VE YS+ Sbjct: 177 LLHKPER-ADIPENI--KEHLIVELYSK 201 >gi|124025174|ref|YP_001014290.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. NATL1A] gi|152112245|sp|A2C0L5|RS4_PROM1 RecName: Full=30S ribosomal protein S4 gi|123960242|gb|ABM75025.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. NATL1A] Length = 202 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RS+ PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSHPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNG+ +I SY+CK GDVI ++ + SKQLA LE LA +VP ++ ++ + A Sbjct: 117 VTVNGKITDIASYQCKAGDVIAIRDNKASKQLAQANLEFPGLA--NVPPHLELDKTKLSA 174 Query: 178 TFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 ++ D + I + LVVE+YSR Sbjct: 175 KI----TAKTDREWVAIEINELLVVEYYSR 200 >gi|257454070|ref|ZP_05619344.1| ribosomal protein S4 [Enhydrobacter aerosaccus SK60] gi|257448548|gb|EEV23517.1| ribosomal protein S4 [Enhydrobacter aerosaccus SK60] Length = 213 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 105/181 (58%), Gaps = 12/181 (6%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG HG R SK S + QLR KQK+K+ YG + E++F + +KEA R +G T NL+ L Sbjct: 38 APGQHGNPR-SKTSEYSAQLREKQKVKRIYG-VLERQFSNYYKEAARMKGATGENLLQML 95 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN--GRS----VNIGSYRCKEGDVIEVKQK 146 E RLD +VYR F T ARQ V+HR +LV GR VNI S + ++GDVI V +K Sbjct: 96 ERRLDNVVYRMGFGATRAEARQLVSHRAILVKKAGRDEFVRVNIPSIQLQDGDVIAVHEK 155 Query: 147 SKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 +K+ + A +LA +R P ++ V+H + TF + P P + +L+VE YS Sbjct: 156 AKEQLRIKNAIELAGQRGTPVWLEVDHSKLQGTFKQAPER---ADLPTEINESLIVELYS 212 Query: 206 R 206 + Sbjct: 213 K 213 >gi|220903959|ref|YP_002479271.1| ribosomal protein S4 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254764584|sp|B8IYL6|RS4_DESDA RecName: Full=30S ribosomal protein S4 gi|219868258|gb|ACL48593.1| ribosomal protein S4 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 208 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTEAKCRMCRREGCKLFLKGDRCFTDKCAYDRRPYAPGQHGRARK-KVSEYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E++F F +AD +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKTRRIYG-ILERQFHGYFVKADMQKGVTGTNLLVILERRLDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VNI S + + GD IEV +K++++ + EA + +A R P ++ + Sbjct: 119 LVRHGVFTLNGRKVNIPSLQVRLGDTIEVPEKNRKIPVLAEAQEVIARRGCPAWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P D+ +PV Q L+VE YS+ Sbjct: 179 AFKGTVKAMPQR-DDIQFPVNEQ--LIVELYSK 208 >gi|229915555|gb|ACQ90899.1| ribosomal protein S4 [Pedinomonas minor] Length = 199 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 13/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+GE L G + P+ TR PG HG K K S +G++L KQK++ Sbjct: 1 MARYSGPRLRIIRRLGE-LPGLTRKPL-TRLNPPGQHGANTK-KNSQYGIRLLEKQKLRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y ISE + K+A R++G T L+ LE RLD +YR F PTI AARQ V+H H Sbjct: 58 NYA-ISETQLIRYVKQARRAKGSTGEILLQNLEMRLDNTIYRLGFAPTILAARQMVSHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVN V I SY C+ D + V+ K SK+L + + L +P ++++N D + A Sbjct: 117 ILVNNVRVTIPSYPCQPKDTVAVRNKPQSKKLVT----NSLTSAVIPGHLNLNKDALTA- 171 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +S VP+ V L+VEFYSR Sbjct: 172 VIQQTASRTSVPFEV--NELLIVEFYSR 197 >gi|315652327|ref|ZP_07905319.1| 30S ribosomal protein S4 [Eubacterium saburreum DSM 3986] gi|315485450|gb|EFU75840.1| 30S ribosomal protein S4 [Eubacterium saburreum DSM 3986] Length = 197 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 18/191 (9%) Query: 29 TRSYG--PGLHGQRRKS---------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 RS G PG G +KS K S +G+QLR KQK K YG + EK FR+ + +A Sbjct: 12 CRSLGLEPGFLGIDKKSNRDTKRANRKLSEYGMQLREKQKAKFIYG-VLEKPFRNYYAKA 70 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 +R +G NL+ LE RLD +V+R T RQ V+H+HVLVNG+ VNI SY K Sbjct: 71 ERMKGQVGENLMILLERRLDNVVFRMGLGRTRKETRQIVDHKHVLVNGKCVNIPSYLVKP 130 Query: 138 GDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIM 195 GDVIE+K+K+K A E + A R VP +I + +N+ T +P+ + DVP + Sbjct: 131 GDVIEIKEKAKSSARYKEVVESTAGRIVPAWIDADLENLKGTVKSLPTREEIDVPVDEL- 189 Query: 196 QPNLVVEFYSR 206 L+VE YS+ Sbjct: 190 ---LIVELYSK 197 >gi|302388060|ref|YP_003823882.1| ribosomal protein S4 [Clostridium saccharolyticum WM1] gi|302198688|gb|ADL06259.1| ribosomal protein S4 [Clostridium saccharolyticum WM1] Length = 197 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/172 (44%), Positives = 103/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +G+QLR KQK K YG + EK FR+ + +A R G NL+ LE RLD Sbjct: 33 KRANRKMSEYGIQLREKQKAKFIYG-VLEKPFRNYYAKASRMNGLVGENLMILLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA---SVLE 155 +V+R F T RQ V+H+ +LVNG+ VNI SY K GDVIEVK+KSK A SV E Sbjct: 92 VVFRMGFGRTRRETRQMVDHKSILVNGKCVNIPSYLIKAGDVIEVKEKSKANARFKSVQE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 A+ A R VP ++ V+H+N+ T P+ + DVP + L+VE YS+ Sbjct: 152 AT--AGRMVPAWLDVDHENLRGTVKEFPTRDEIDVP----VNEMLIVELYSK 197 >gi|254416392|ref|ZP_05030145.1| ribosomal protein S4 [Microcoleus chthonoplastes PCC 7420] gi|196176830|gb|EDX71841.1| ribosomal protein S4 [Microcoleus chthonoplastes PCC 7420] Length = 202 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ KSP RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGDLPGLTRKSP--RRSYPPGQHGQARR-KRSEYAIRLEEKQKLRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLLRYVRKARRATGSTGQALLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V+VNGR VNI SY+C+ GDVI VK ++S++L LE LA ++P ++ + Sbjct: 117 VMVNGREVNIASYQCRPGDVIMVKDNERSRRLVEKNLEYPGLA--NLPSHLEFDKK---- 170 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 TF + + + + V +Q N LVVEFYSR Sbjct: 171 TFTGKVNGMIEREW-VALQINELLVVEFYSR 200 >gi|19551798|ref|NP_599800.1| 30S ribosomal protein S4 [Corynebacterium glutamicum ATCC 13032] gi|62389453|ref|YP_224855.1| 30S ribosomal protein S4 [Corynebacterium glutamicum ATCC 13032] gi|26399381|sp|Q8NSV4|RS4_CORGL RecName: Full=30S ribosomal protein S4 gi|21323328|dbj|BAB97956.1| Ribosomal protein S4 and related proteins [Corynebacterium glutamicum ATCC 13032] gi|41324787|emb|CAF19269.1| RIBOSOMAL PROTEIN S4 [Corynebacterium glutamicum ATCC 13032] Length = 201 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR + EA+R G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLLQLQEKQKARFIYG-VMEKQFRRYYAEANRRAGKTGENLV 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+++++ S+R + D+I V++KS++ Sbjct: 87 VLLESRLDNVVYRAGLANTRRQARQLVSHGHFTVNGKAIDVPSFRVSQYDIINVREKSQK 146 Query: 150 LASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA LA+ VP ++ V +N+ ++P + D+P +Q L+VEFYS+ Sbjct: 147 MNWFEEAQDNLADAVVPAWLQVVPENLRILVHQLPERAQIDIP----LQEQLIVEFYSK 201 >gi|297159624|gb|ADI09336.1| 30S ribosomal protein S4 [Streptomyces bingchenggensis BCW-1] Length = 208 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 22/192 (11%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ R Y PG HG R ++K S + LQLR KQK + YG + EK+FR + EA++ G Sbjct: 30 KCPIEIRPYPPGEHG-RGRTKDSEYLLQLREKQKATRIYG-VLEKQFRGYYAEANKKTGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LESRLD +VYRA F + ARQ V H H+ VNGR +I S R D+IEV Sbjct: 88 TGENLLRILESRLDNVVYRAGFAKSRDHARQLVRHGHINVNGRKTDIPSARVAVNDIIEV 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPV--------I 194 + KS+ L A ++ ER VP ++ IPS L+ + + + Sbjct: 148 RPKSRTLTPFQVAQAEAGERTVPAWLEA-----------IPSQLRILVHSLPERQVIDTQ 196 Query: 195 MQPNLVVEFYSR 206 +Q L+VE YS+ Sbjct: 197 VQEQLIVELYSK 208 >gi|119484418|ref|ZP_01619035.1| 30S ribosomal protein S4 [Lyngbya sp. PCC 8106] gi|119457892|gb|EAW39015.1| 30S ribosomal protein S4 [Lyngbya sp. PCC 8106] Length = 202 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + V R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGD-LPGLTRK-VARRAYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K+A R+ G T L+ LE RLD ++R PTI ARQ VNH H Sbjct: 58 NYG-LSEKQLLRYVKKARRATGSTGQVLLQMLEMRLDNTIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VN R V++ SY+C+ GDV+ + K+KS+++ L+ LA +VP ++ ++ + ++A Sbjct: 117 VTVNDRVVDVASYQCRPGDVVGIRNKEKSREMVKANLQYPGLA--NVPSHLELDKEKLLA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +S+ D + V +Q N LVVE+YSR Sbjct: 175 KV----NSVIDREW-VALQVNELLVVEYYSR 200 >gi|184154963|ref|YP_001843303.1| 30S ribosomal protein S4 [Lactobacillus fermentum IFO 3956] gi|227514502|ref|ZP_03944551.1| ribosomal protein S4 [Lactobacillus fermentum ATCC 14931] gi|226699079|sp|B2GAZ1|RS4_LACF3 RecName: Full=30S ribosomal protein S4 gi|183226307|dbj|BAG26823.1| 30S ribosomal protein S4 [Lactobacillus fermentum IFO 3956] gi|227087129|gb|EEI22441.1| ribosomal protein S4 [Lactobacillus fermentum ATCC 14931] Length = 201 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRPYAPGDHGNDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI V++KSK L V++ + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQVIAVREKSKNL-DVIKGAVEAVVARPAYVEFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D+ + L+VEFY++ Sbjct: 178 TRLPQR-EDMNADI--DEALIVEFYNK 201 >gi|148655311|ref|YP_001275516.1| 30S ribosomal protein S4 [Roseiflexus sp. RS-1] gi|172048078|sp|A5USG3|RS4_ROSS1 RecName: Full=30S ribosomal protein S4 gi|148567421|gb|ABQ89566.1| SSU ribosomal protein S4P [Roseiflexus sp. RS-1] Length = 206 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K+ RR+G + + + + R + PG HG R+ + S +GLQL KQK + Sbjct: 1 MARYRGPVGKVSRRLGIGITDKGQRILAKRPFPPGQHGPSARRRQVSDYGLQLLEKQKAR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR IF++A R G+T L LE RLD +VYR F T ARQ V+H Sbjct: 61 YVYG-VLERQFRRIFEKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMV 176 H+ VNGR NI SY + G+ I V+ +S++ +++++ LA P+++ +N ++ Sbjct: 120 HITVNGRKTNIPSYTVRVGETIAVRPESRRRTYFKNLIDSGALARHKTPDWLRLNPADLS 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P P + L+VEFYSR Sbjct: 180 GEVVAMPRREDAEPG---INEQLIVEFYSR 206 >gi|225020483|ref|ZP_03709675.1| hypothetical protein CORMATOL_00490 [Corynebacterium matruchotii ATCC 33806] gi|224946872|gb|EEG28081.1| hypothetical protein CORMATOL_00490 [Corynebacterium matruchotii ATCC 33806] Length = 203 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 11/198 (5%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G K+ + R Y PG G R + K S + LQL+ KQK K YG + EK+FR Sbjct: 13 RRLRVDLVGGSKA-YDKRPYPPGQAG-RNRIKESEYLLQLQEKQKAKYTYG-VLEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H LVNG+ VN+ S Sbjct: 70 YYAEANRMPGKTGENLVILLEARLDNVVYRAGLARTRRQARQLVSHGHFLVNGKKVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQL---AERDVPEYISVNHDNMVATFVRIPSSLK-D 188 YR + D+I+V+ KS+ + EA++ A++ +P ++ V + ++P + D Sbjct: 130 YRVSQYDIIDVRDKSRTMLWFEEATENLVDADKVIPAWLQVVPSTLRILVHQLPERAQID 189 Query: 189 VPYPVIMQPNLVVEFYSR 206 VP +Q L+VE YS+ Sbjct: 190 VP----LQEQLIVELYSK 203 >gi|27904918|ref|NP_778044.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611835|sp|P59491|RS4_BUCBP RecName: Full=30S ribosomal protein S4 gi|27904316|gb|AAO27149.1| ribosomal protein S4 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 206 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG +R+ + S +G+QLR KQK+++ YG I E +FR+ +K A R +G+T NL+ LE Sbjct: 38 PGQHGSKRQ-RLSDYGVQLREKQKVRRLYG-ILEAQFRNYYKHASRLKGNTGENLLFLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +RLD + YR F T ARQ V+H+ +LVN +VNI SY+ GDVI + + SK + + Sbjct: 96 NRLDNVTYRIGFGSTRAEARQLVSHKSILVNNCTVNIPSYQVSPGDVISIHKNSKLQSRI 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +L+E R+ P +I V+ + M + R+P D+ + L++E YS+ Sbjct: 156 KAALELSEQRETPIWIEVDFNKMQGIYKRVPER-SDLSAEI--NEYLIIELYSK 206 >gi|291544483|emb|CBL17592.1| SSU ribosomal protein S4P [Ruminococcus sp. 18P13] Length = 198 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 9/168 (5%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 + K S +G+QL+ KQK+K YG + EK F F+ A++ G NLI+ LESRLD + Y Sbjct: 37 RKKVSEYGMQLKEKQKLKFIYG-VLEKPFYHYFEIAEKMEGKAGDNLITLLESRLDNVAY 95 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI---EVKQKSKQLASVLEASQ 158 R T ARQ V HRH VNG+ VNI SYR KEGDVI E + S++ VLE Q Sbjct: 96 RMGMALTRREARQLVTHRHFTVNGQRVNIPSYRVKEGDVIALYEGSRSSQKFKDVLE--Q 153 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A R VP ++ N +N R+P ++D+ Y V + +L+VE YS+ Sbjct: 154 TANRPVPLWLEANKENFSVKVTRMP-KVEDLDYEV--EAHLIVELYSK 198 >gi|328957152|ref|YP_004374538.1| 30S ribosomal protein S4 [Carnobacterium sp. 17-4] gi|328673476|gb|AEB29522.1| 30S ribosomal protein S4 [Carnobacterium sp. 17-4] Length = 201 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K + +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-IERRPYAPGPHGPNSRKKLTEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F ++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-MNERQFSNLFLKAGKIKEGKHGENFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G VI V++KSK + +++++ A P+Y++ + + + ++ Sbjct: 119 HILVDGKRVDIPSYSVSVGQVITVREKSKNM-DIIKSAAEALFGRPDYVTFDVEKLEGSY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L+D + ++VE+YSR Sbjct: 178 NRLP--LRD-ELSAEIDETIIVEYYSR 201 >gi|323700831|ref|ZP_08112743.1| ribosomal protein S4 [Desulfovibrio sp. ND132] gi|323460763|gb|EGB16628.1| ribosomal protein S4 [Desulfovibrio desulfuricans ND132] Length = 208 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K K+ RR GE L+ + K R Y PG G R + K S + +QLR Sbjct: 1 MARYTEAKCKLCRREGEKLFLKGDRCYTDKCAYEKRPYPPGQAG-RLRHKMSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR+ +K A+ +G HNL+ LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRMYG-ILEGQFRTYYKRAEGMKGVAGHNLLFLLERRLDNVIYRLGFANSRDQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR V+I S + K DVIEV+++++++ + EA + +A R PE++ + Sbjct: 119 LVLHGIFKLNGRRVSIPSMQVKAEDVIEVREEARKIPVINEAQEVIARRGCPEWLESDGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N T +PS +D+ +P+ Q L+VE YS+ Sbjct: 179 NFKGTVKAMPSR-EDIQFPINEQ--LIVELYSK 208 >gi|160946867|ref|ZP_02094070.1| hypothetical protein PEPMIC_00828 [Parvimonas micra ATCC 33270] gi|158447251|gb|EDP24246.1| hypothetical protein PEPMIC_00828 [Parvimonas micra ATCC 33270] Length = 216 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 11/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K RR+G N+ G PK+ + G GL R K + +GLQL KQ+++ Sbjct: 18 MAKMMGPRFKQSRRLGLNVCGHPKA---NKRMGKGL--ARNDKKLTEYGLQLLEKQRLRA 72 Query: 61 YYGDISEKKFRSIFKEADRSRGD-TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG + EK+FR+ ++A R + T L+ LE+RLD +VYR F +I ARQ V H Sbjct: 73 YYG-VMEKQFRTYVEKALRQKERITGDALVMMLETRLDNLVYRMGFASSIRQARQMVVHG 131 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LVNG+ V+I SY + GD I +++KS+++ E + V YI + + AT Sbjct: 132 HMLVNGKKVDIPSYAVQVGDEITLREKSQKVEMFKENFESTFLGVVPYIE-KKEGLKATL 190 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D P+ +Q +LVVEFYSR Sbjct: 191 TRMPE--RD-EVPIEIQDSLVVEFYSR 214 >gi|257126747|ref|YP_003164861.1| 30S ribosomal protein S4 [Leptotrichia buccalis C-1013-b] gi|260891350|ref|ZP_05902613.1| ribosomal protein S4 [Leptotrichia hofstadii F0254] gi|257050686|gb|ACV39870.1| ribosomal protein S4 [Leptotrichia buccalis C-1013-b] gi|260858733|gb|EEX73233.1| ribosomal protein S4 [Leptotrichia hofstadii F0254] Length = 195 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K + +G Q R KQK+K YG + EK+F +++EA R G T L+ +LE RLD ++YR Sbjct: 39 KLTEYGTQQREKQKVKFVYG-VMEKQFYKLYEEATRKEGVTGELLLQYLERRLDNVIYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+L+NG+ VNI SYR K+GDVI VK+ SK+LA + E+ + ++ Sbjct: 98 GFGATRRQARQIVSHGHILINGKRVNIASYRVKQGDVITVKEDSKELALIKES--VGQKT 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S+ + A + P V + V +++EFYSR Sbjct: 156 VPGWLSLEEGALTAKVLENPGR-DAVDFEV--DEAMIIEFYSR 195 >gi|312977626|ref|ZP_07789373.1| LOW QUALITY PROTEIN: ribosomal protein S4 [Lactobacillus crispatus CTV-05] gi|310895365|gb|EFQ44432.1| LOW QUALITY PROTEIN: ribosomal protein S4 [Lactobacillus crispatus CTV-05] Length = 203 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + R G N + LE RLD++VYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGQHGVNFMILLERRLDSLVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALE-AVTARPSFVSFDENKMEGTL 177 Query: 180 VRIP 183 VR+P Sbjct: 178 VRLP 181 >gi|312144221|ref|YP_003995667.1| ribosomal protein S4 [Halanaerobium sp. 'sapolanicus'] gi|311904872|gb|ADQ15313.1| ribosomal protein S4 [Halanaerobium sp. 'sapolanicus'] Length = 208 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 121/215 (56%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S K+ RR GE L+ + K + R Y PG HGQ R K S +GLQLR Sbjct: 1 MARYTGSVCKLCRREGEKLYLKGARCYSKKCSFDRRPYVPGEHGQGR-HKVSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+F + FK A+ + G T N + LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRIYG-IMEKQFSNYFKSAENTAGVTGENFLQLLERRLDNVVYRMGFASSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYR---CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVN 171 FV H H+ VNGR V+I SY+ V + +KSK+ V E + ++ E+I+ + Sbjct: 119 FVLHGHIKVNGRKVDIPSYQVDVDDVVSVKDSSRKSKRFKEVFEYN--SDFATQEWINSD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T V +P +D+ YPV + +L+VE+YSR Sbjct: 177 LEKAEGTVVALPER-EDIDYPV--EEHLIVEYYSR 208 >gi|238763710|ref|ZP_04624669.1| 30S ribosomal protein S4 [Yersinia kristensenii ATCC 33638] gi|238698012|gb|EEP90770.1| 30S ribosomal protein S4 [Yersinia kristensenii ATCC 33638] Length = 154 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 5/158 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +QLR KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T Sbjct: 1 MQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATR 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYI 168 +RQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ Sbjct: 60 AESRQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 119 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V+ M F RIP D+ + +L+VE YS+ Sbjct: 120 EVDAVKMEGVFKRIPER-TDLSADI--NEHLIVELYSK 154 >gi|261378065|ref|ZP_05982638.1| ribosomal protein S4 [Neisseria cinerea ATCC 14685] gi|269145515|gb|EEZ71933.1| ribosomal protein S4 [Neisseria cinerea ATCC 14685] Length = 206 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR-PKSPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG + K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGGK-KPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EA+R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEAERRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ +++K+K+ + EA LA + +P +++V+ + + Sbjct: 119 SHKAIAVNGQVVNIPSFQVKVGDVVSIREKAKKQVRIQEALSLATQVGLPGWVAVDANKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + LVVEFYS+ Sbjct: 179 EGVFKNMPDR---AELTGDINEQLVVEFYSK 206 >gi|198282663|ref|YP_002218984.1| 30S ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667358|ref|YP_002424856.1| ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC 23270] gi|226697790|sp|B7J4A3|RS4_ACIF2 RecName: Full=30S ribosomal protein S4 gi|226697791|sp|B5EM98|RS4_ACIF5 RecName: Full=30S ribosomal protein S4 gi|198247184|gb|ACH82777.1| ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519571|gb|ACK80157.1| ribosomal protein S4 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 208 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 24/219 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K ++ RR G L+ + K PV+ R+Y PG HGQRR + S +G QLR Sbjct: 1 MAKYTGPSCRLCRREGGKLFLKGEKCFSDKCPVSIRAYAPGQHGQRR-GRVSEYGGQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR F+ A ++RG T L+ FLE RLD + YR F + ARQ Sbjct: 60 KQKIRRIYG-VLEGQFRRYFQRASQARGVTGELLLRFLELRLDNVAYRLGFGASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H+LVNGR V+I SY+ + GDV+ V + ++ ++A+ +EA+ A R PE++S++ Sbjct: 119 VVRHGHILVNGRRVDIPSYQVRAGDVVSVAEAARTHIRIAASVEAT--AGRGFPEWVSMD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNL----VVEFYSR 206 + AT +K VP M P+L VVE YS+ Sbjct: 177 TTELKAT-------IKAVPVREDMAPDLNEQVVVELYSK 208 >gi|299144486|ref|ZP_07037565.1| ribosomal protein S4 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517574|gb|EFI41314.1| ribosomal protein S4 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 198 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K RR+G N+ G PK+ + + G R K + +G QL KQ+++ Sbjct: 1 MAKMMVPRFKQSRRLGLNVCGHPKA-MKRATKGTA----RSDKKLTEYGKQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F ++FKEA +S+ T L+ FLE RLD + YR F +I ARQ V H H Sbjct: 56 YYG-VLEKQFVNLFKEAKKSKEQTGPALVQFLERRLDNLAYRMGFASSIRQARQMVTHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISV-NHDNMVATF 179 + VNG+ VNI SYRC GDVI + + ++ + L + V Y + ++ AT Sbjct: 115 ITVNGKKVNIPSYRCSAGDVIALSARGRK--AELFKTNYETNYVTSYPYIKKEEDFKATL 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ +D+ PV + L+VEFYS+ Sbjct: 173 VSLPNR-EDI--PVEIDDQLIVEFYSK 196 >gi|212704608|ref|ZP_03312736.1| hypothetical protein DESPIG_02670 [Desulfovibrio piger ATCC 29098] gi|212672007|gb|EEB32490.1| hypothetical protein DESPIG_02670 [Desulfovibrio piger ATCC 29098] Length = 208 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K +I RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTEAKCRICRREGCKLFLKGDRCFTDKCAYDRRPYAPGQHGRARK-KVSEYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I EK+FR F++A+ +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKTRRSYG-ILEKQFRGYFEKAEMQKGVTGTNLLVILERRLDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NG V I S + + GD IEV +K++++ + EA + +A R P ++ + Sbjct: 119 LVRHGIFTLNGHKVTIPSLQVRVGDTIEVPEKNRKIPVLAEAQEVIARRGCPAWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P D+ +PV Q L+VE YS+ Sbjct: 179 AFKGTVKALPQR-DDIQFPVNEQ--LIVELYSK 208 >gi|116513812|ref|YP_812718.1| ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093127|gb|ABJ58280.1| SSU ribosomal protein S4P [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 185 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR-GDTSHNL 88 RSY PG HG + + S +G+QL+ KQK++ +G ++E++FR++F A + R G N Sbjct: 11 RSYIPGQHGPNHRGRLSEYGMQLQEKQKLRWMFG-LNERQFRTLFARAGKIREGQHGTNF 69 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 + LE RLD +VYR T ARQ VNH H+ V+G+ V+I SY K G I +K+KSK Sbjct: 70 MILLERRLDNVVYRLGLATTREQARQLVNHGHITVDGKRVDIPSYEVKVGQTISLKEKSK 129 Query: 149 QLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L V +A + +A R P ++S + D M VR P +D P I + LVVE+Y++ Sbjct: 130 NLQQVKDALEAVASR--PSFVSFDEDKMEGQLVRFPE--RDEMEPEIDEA-LVVEYYNK 183 >gi|320537621|ref|ZP_08037557.1| ribosomal protein S4 [Treponema phagedenis F0421] gi|320145539|gb|EFW37219.1| ribosomal protein S4 [Treponema phagedenis F0421] Length = 210 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 7/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSP--VNTRSYGPG-LHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 K KI RR+G N++G PK ++ + GPG + G + + K S +G QL+ KQK + YG Sbjct: 13 KGKIVRRLGVNIFGNPKYSKLLDKKPNGPGKVRGAKSRGKMSVYGEQLKEKQKFRFAYG- 71 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 +SE++FR++F +A + +G T N++S +E RLD +YR F + ARQ V+H + L+N Sbjct: 72 MSERQFRNLFAKAQQMKGVTGDNMLSLMEQRLDNTIYRMGFAISRAQARQMVSHAYFLIN 131 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 G+ NI S R K DVI K K + L+ +++V+ +N+ AT +PS Sbjct: 132 GKPANIPSMRIKANDVITSKDKKGIQNLIRHNLSLSHGSRGSWLAVDEENLSATVSILPS 191 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + P I VVE+YSR Sbjct: 192 ATDIQPVGNI---QYVVEYYSR 210 >gi|284049864|ref|ZP_06380074.1| 30S ribosomal protein S4 [Arthrospira platensis str. Paraca] gi|291571495|dbj|BAI93767.1| 30S ribosomal protein S4 [Arthrospira platensis NIES-39] Length = 202 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 122/209 (58%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ L G + R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVARRLGD-LPGLTRKTAR-RAYPPGQHGQARR-KRSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R+ G T L+ +LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LSERQLLRYVRKARRASGSTGQVLLQYLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VNG+ V+I SY+C+ G++I V+ + K V L+ LA +VP ++ ++ +N+ A Sbjct: 117 ITVNGKVVDIASYQCRPGEIIGVRNRDKSREMVKANLQYPGLA--NVPSHLELDKNNLTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + ++ + + LVVE+YSR Sbjct: 175 T---VNGVIEREWVALSINELLVVEYYSR 200 >gi|218135254|ref|ZP_03464058.1| hypothetical protein BACPEC_03159 [Bacteroides pectinophilus ATCC 43243] gi|217990639|gb|EEC56650.1| hypothetical protein BACPEC_03159 [Bacteroides pectinophilus ATCC 43243] Length = 197 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 105/167 (62%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +GLQLR KQK K YG + EK FR+ +K+A++ G + NL+ LE RLD +++R Sbjct: 38 KISEYGLQLREKQKAKFIYG-VLEKPFRNYYKKAEKMSGQSGENLMILLELRLDNVIFRM 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLA 160 F T ARQ V+H+HVLVNG+ VNI SY K GDVIE+++KSK + +L+A+ + Sbjct: 97 GFARTRKEARQIVDHKHVLVNGKRVNIPSYLVKAGDVIEIREKSKGSERYKQILDAT--S 154 Query: 161 ERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 R VPE++ + + + + +P+ + DVP + L+VE YS+ Sbjct: 155 GRVVPEWLEADAEALKGSVKAVPTRDIIDVP----VNEMLIVELYSK 197 >gi|269795072|ref|YP_003314527.1| 30S ribosomal protein S4P [Sanguibacter keddieii DSM 10542] gi|269097257|gb|ACZ21693.1| SSU ribosomal protein S4P [Sanguibacter keddieii DSM 10542] Length = 205 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 109/201 (54%), Gaps = 8/201 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 ++ R +G L + R Y PG HG+ R+ S + ++LR KQ+++ YG + EK+ Sbjct: 9 RLSRALGIALTPKAVKHFEKRPYPPGEHGRARRRTESDYAVRLREKQRLRAQYG-LREKQ 67 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 F+EA ++ G T L+ LE RLD +V RA F T ARQ V HRH+LV+G+ V+ Sbjct: 68 MARAFEEARKAPGLTGEALVELLEVRLDALVLRAGFARTTLQARQAVVHRHILVDGKIVD 127 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD----VPEYISVNHDNMVATFVRIPSS 185 S++ K G ++VK KS+ + A+ A RD VP Y++V+ + + R P Sbjct: 128 RPSFKVKPGQTVQVKPKSQSMTPFQVAAAGAHRDVLPAVPGYLTVSLEKLSFVLSRSP-- 185 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 K PV + LVVE YSR Sbjct: 186 -KRAEVPVTCEVQLVVEHYSR 205 >gi|254437691|ref|ZP_05051185.1| hypothetical protein OA307_2561 [Octadecabacter antarcticus 307] gi|198253137|gb|EDY77451.1| hypothetical protein OA307_2561 [Octadecabacter antarcticus 307] Length = 91 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 1/91 (1%) Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNM 175 +NH HV VNG+ VNI SYR KEGD++EV+ SKQ +VL+A LAERDVP+Y+ V+H M Sbjct: 1 MNHGHVTVNGKKVNIPSYRVKEGDIVEVRDSSKQNVAVLDAIGLAERDVPDYMDVDHSKM 60 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATFVR P L DVPYPV+M+PNLV+E+Y++ Sbjct: 61 SATFVRTP-GLGDVPYPVMMEPNLVIEYYAQ 90 >gi|227832272|ref|YP_002833979.1| 30S ribosomal protein S4 [Corynebacterium aurimucosum ATCC 700975] gi|262183872|ref|ZP_06043293.1| 30S ribosomal protein S4 [Corynebacterium aurimucosum ATCC 700975] gi|254764581|sp|C3PL37|RS4_CORA7 RecName: Full=30S ribosomal protein S4 gi|227453288|gb|ACP32041.1| 30S ribosomal protein S4 [Corynebacterium aurimucosum ATCC 700975] Length = 201 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 119/208 (57%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR+ +L G + R Y PG G R + K S + LQL+ KQK K Sbjct: 1 MARYTGPATRVSRRLRVDLVGGDMA-FERRPYPPGQAG-RNRIKESEYLLQLQEKQKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR + EA+R G T NL+ LESRLD ++YRA T ARQ V+H H Sbjct: 59 TYG-VLERQFRRYYAEANRLPGKTGDNLVVLLESRLDNVIYRAGLANTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 VNG+ +N+ S+R + D+I+V+++S+++ EA +L + +VP ++ V D + Sbjct: 118 FTVNGKKINVPSFRVTQYDIIDVRERSQKMEWFEEAQDRLVDANVPAWLQVVPDTLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VE YS+ Sbjct: 178 HQLPERAQIDVP----LQEQLIVELYSK 201 >gi|256825859|ref|YP_003149819.1| 30S ribosomal protein S4 [Kytococcus sedentarius DSM 20547] gi|256689252|gb|ACV07054.1| SSU ribosomal protein S4P [Kytococcus sedentarius DSM 20547] Length = 202 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 23/215 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+ +L G KS + R Y PG+HG+RR + Y QL+ KQK + Sbjct: 1 MARYTGPITKKSRRLKVDLVGSDKS-FDARPYPPGMHGRRRTQEKEYLA-QLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA R G T NL++ LESRLD ++YRA PT AARQ V H H Sbjct: 59 MYG-VMEKQFRRYYAEAARRPGKTGDNLLTILESRLDNVIYRAGIAPTRRAARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 L+NG+ V++ S + + D+I+V+ KS + A + ER VP ++ V Sbjct: 118 FLLNGQRVDVPSIQVSKFDIIDVRPKSAETQPFEIARETFGERPVPAWMKV--------- 168 Query: 180 VRIPSSLKDVPY--PV------IMQPNLVVEFYSR 206 +P SL+ + + PV ++ L+VE YS+ Sbjct: 169 --VPGSLRVLIFDRPVREQIDTVLAEQLIVELYSK 201 >gi|119718096|ref|YP_925061.1| 30S ribosomal protein S4 [Nocardioides sp. JS614] gi|152112238|sp|A1SNI9|RS4_NOCSJ RecName: Full=30S ribosomal protein S4 gi|119538757|gb|ABL83374.1| SSU ribosomal protein S4P [Nocardioides sp. JS614] Length = 202 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 113/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G S R Y PG HG+ R + Y LQLR KQK + Sbjct: 1 MARYTGPMTKKSRRLGVDLVG-GDSAYERRPYPPGQHGRGRIKESEYL-LQLREKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F + + EA R G T NL+ LE RLD +VYRA F T ARQ V H H Sbjct: 59 TYG-VLEKQFHNYYTEASRRAGKTGDNLLQLLECRLDNVVYRAGFARTRRHARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 VNG+ V+I S++ DVI+V++KS ++ + A + ER VP ++ M Sbjct: 118 FKVNGKKVDIPSFQVTAHDVIDVREKSLEMTPFIVARETHGERVVPAWLEAIPSRMRVLV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + D+P +Q L+VE+YS+ Sbjct: 178 HQLPVRAQIDIP----VQEQLIVEYYSK 201 >gi|86608572|ref|YP_477334.1| 30S ribosomal protein S4 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502848|sp|Q2JMH0|RS4_SYNJB RecName: Full=30S ribosomal protein S4 gi|86557114|gb|ABD02071.1| ribosomal protein S4 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 203 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 114/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGE-NLWGRP-KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ + KI RR G +L G K P NT PG+HG RK K S + ++L KQK+ Sbjct: 1 MSRYTGPRLKIIRRFGGLDLPGLTRKRPKNTNP--PGMHGAERKKK-SEYAIRLEEKQKV 57 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SE++ ++A RS+G T L+ LE RLD IV+R PTI AARQ V+H Sbjct: 58 RFNYG-LSERQMIRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSH 116 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+ VNG+ V I SY CK GDVI VK K V ++ +P+Y+ + + + Sbjct: 117 GHIEVNGQKVTIPSYGCKVGDVITVKNKESSRKLVAAYAEYPGLFLPDYLEFDKEKLRGR 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + + PV LVVEFYSR Sbjct: 177 IKELPPR-EQICAPV--NELLVVEFYSR 201 >gi|304439715|ref|ZP_07399614.1| 30S ribosomal protein S4 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371790|gb|EFM25397.1| 30S ribosomal protein S4 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 203 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 14/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR-SYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 ++K + K RR+G N+ G PK+ N R + G R K + +G QL KQ+++ Sbjct: 6 LAKMMGPRFKESRRLGLNVCGHPKA--NKRMTKGTA----RSDKKLTEYGKQLLEKQRLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG + EK+F ++FKEA ++ T L+ FLE RLD + YR F +I ARQ V+H Sbjct: 60 AYYG-VLEKQFVNLFKEAKKAPEQTGTALVQFLEMRLDNLAYRMGFANSIRQARQLVSHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD-NMVAT 178 HV VNG+ +NI SYRCK GDVI + + + S + V Y ++ D N AT Sbjct: 119 HVHVNGKKLNIPSYRCKPGDVISLSPRG--MKSAIFKENFETNFVTSYPYISKDKNFKAT 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +D+ P+ ++ L+VEFYS+ Sbjct: 177 LTSVPGR-EDI--PIEIEDQLIVEFYSK 201 >gi|302339986|ref|YP_003805192.1| ribosomal protein S4 [Spirochaeta smaragdinae DSM 11293] gi|301637171|gb|ADK82598.1| ribosomal protein S4 [Spirochaeta smaragdinae DSM 11293] Length = 205 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQK 57 M +++ + KI RR+G NL+G PK + + GPG + RR K S +G+QL KQK Sbjct: 1 MPQKKPPRGKIVRRLGVNLFGNPKYDRILKKKPNGPGKSPKNRRGRKISDYGMQLLEKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++ YG +SEK+FR+ F EA R +G T I LESRLD +YR + + ARQ V+ Sbjct: 61 VRYCYG-LSEKQFRTTFFEAKRKQGVTDEIFIQLLESRLDNSIYRLGWAVSREQARQMVS 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H+H VNG+S NI S R K GD I V+ K A + E + R ++S ++D ++A Sbjct: 120 HKHFKVNGQSTNIPSIRLKPGDEIAVRDKKNIQAIIRERIVNSGRARTPWLSADNDKLIA 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ PS P + ++EFYS+ Sbjct: 180 TYDAHPSLEAAKP---VGDLQAIIEFYSK 205 >gi|315640101|ref|ZP_07895224.1| 30S ribosomal protein S4 [Enterococcus italicus DSM 15952] gi|315484148|gb|EFU74621.1| 30S ribosomal protein S4 [Enterococcus italicus DSM 15952] Length = 203 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYAPGQHGPNSRGSRSEYGQQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFVKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G VI V++KS+ L V EA + + P ++S + + + + Sbjct: 119 HITVDGKRVDIPSYHVDLGQVIGVREKSQNLTIVKEAVE-STVGRPAFVSFDDEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D YP I + L+VEFY++ Sbjct: 178 SRLPE--RDELYPDIDEA-LIVEFYNQ 201 >gi|189501628|ref|YP_001957345.1| RNA-binding S4 domain-containing protein [Candidatus Amoebophilus asiaticus 5a2] gi|226697797|sp|B3EUJ7|RS4_AMOA5 RecName: Full=30S ribosomal protein S4 gi|189497069|gb|ACE05616.1| RNA-binding S4 domain protein [Candidatus Amoebophilus asiaticus 5a2] Length = 200 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR E ++G P + ++Y PG HG+ RK K Y +QL K K K Sbjct: 1 MARYIGPKAKISRRFNEPIFG-PSKALQKKNYPPGQHGKIRKKKSEY-AIQLMEKGKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F ++F +A + +G T L+ +LE+RLD +VYR PT +ARQ V+H+H Sbjct: 59 IYG-LLEKQFANLFYKAAKKKGVTGELLLQYLETRLDNVVYRLGITPTRRSARQLVSHKH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY K GD+I + +K+K ++ E + ++ + M+ + Sbjct: 118 ITVNGKIVNIPSYALKVGDIIGLTEKTKSSNAITERISSHSHNKNNWLEWDSKQMIGKVM 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++P + Q +VE YS+ Sbjct: 178 SLPHR-EEIPEKINEQS--IVELYSK 200 >gi|227529662|ref|ZP_03959711.1| 30S ribosomal protein S4 [Lactobacillus vaginalis ATCC 49540] gi|227350452|gb|EEJ40743.1| 30S ribosomal protein S4 [Lactobacillus vaginalis ATCC 49540] Length = 220 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R+Y PG HG+ R K S +G QLR KQK++ Sbjct: 20 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRAYAPGDHGRDRHGKLSEYGTQLREKQKLRF 78 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 79 MYG-MTERQFSNLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 137 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G VI V+ KSK L V++ + A P Y+ + D + Sbjct: 138 HITVDGKRVDIPSYEVSVGQVIAVRDKSKNL-DVIKNAVDAVVSRPSYVDFDADKLEGKL 196 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ +D+ + +L+VEFY++ Sbjct: 197 NRIPAR-EDMDADI--DESLIVEFYNK 220 >gi|153952888|ref|YP_001393653.1| 30S ribosomal protein S4 [Clostridium kluyveri DSM 555] gi|219853553|ref|YP_002470675.1| hypothetical protein CKR_0210 [Clostridium kluyveri NBRC 12016] gi|146345769|gb|EDK32305.1| RpsD1 [Clostridium kluyveri DSM 555] gi|219567277|dbj|BAH05261.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 206 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 18/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K + ++ RR G L+ + K + R Y PG HGQ RK K S +GLQLR Sbjct: 1 MAKYTGAVCRLCRREGLKLFLKGDRCYTDKCGFSRRGYAPGQHGQGRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR + +ADR +G T NL+ LE+RLD +VY+ + + ARQ Sbjct: 60 KQKSKRIYG-LLEKQFRKYYDKADRKKGITGENLLVLLETRLDNVVYKLGYGQSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H VNGR VNI S++ D I VK SK S + AE + +P ++ N Sbjct: 119 LVTHGHFKVNGRKVNIPSFKVSVNDTISVKDGSK---SSEKFKTFAENPKTLPTWLEGNI 175 Query: 173 DNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 +N +R P + DVP + L+VE YS+ Sbjct: 176 ENFEGRVIREPMREEIDVP----VNETLIVELYSK 206 >gi|254798683|ref|YP_003058268.1| ribosomal protein S4 [Parachlorella kessleri] gi|229915631|gb|ACQ90974.1| ribosomal protein S4 [Parachlorella kessleri] Length = 207 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 120/212 (56%), Gaps = 13/212 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK------SKPSYFGLQLRA 54 MS+ K +I RR+GE L G + V R++ PG HG ++K +K S + ++L+ Sbjct: 1 MSRYRGPKLRIVRRLGE-LPGLTQK-VCVRNFPPGQHGPKKKLTGSQKAKESQYAIRLKE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ YG I+E++ +EA R +G T L+ LE+RLD +++R F PTI AARQ Sbjct: 59 KQKLRFNYG-INERQLLKYIREARRRKGSTGEVLLQLLETRLDNVIFRLGFAPTIAAARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H+LVN +NI SY CK DVI V + S+ L + + L VP ++ ++ + Sbjct: 118 LVAHGHILVNQHKINIPSYICKINDVIGVCETSRPLITK-SLNSLGLPQVPSFLDLDQEK 176 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A + +S+ + + LVVE+YSR Sbjct: 177 LSAV---VTNSISRDMVGLNINELLVVEYYSR 205 >gi|83816564|ref|YP_445191.1| 30S ribosomal protein S4 [Salinibacter ruber DSM 13855] gi|294507075|ref|YP_003571133.1| 30S ribosomal protein S4 [Salinibacter ruber M8] gi|123529117|sp|Q2S3P0|RS4_SALRD RecName: Full=30S ribosomal protein S4 gi|83757958|gb|ABC46071.1| ribosomal protein S4 [Salinibacter ruber DSM 13855] gi|294343403|emb|CBH24181.1| 30S ribosomal protein S4 [Salinibacter ruber M8] Length = 200 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR E ++G P + + Y PG HGQ R+ + S + +QL+ KQK K Sbjct: 1 MARYRGPKQKIARRFKEPIFG-PSKALERKPYPPGQHGQSRRRRESEYAVQLKEKQKTKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F+++F +A R +G T L+ LE+RLD V+R T ARQFV HRH Sbjct: 60 TYG-LLERQFKNLFDKASRMQGVTGEKLLILLEARLDNTVFRMGIARTRRQARQFVAHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VN V+I SY DV+ VK S+ L + + +R ++ ++ M F+ Sbjct: 119 IMVNDEVVDIPSYEMSPDDVVSVKPSSQDLEVIQTNVEHRQRTF-SWLEMDRQEMKGKFI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ +++P + Q L+VE YS+ Sbjct: 178 DYPNR-EEIPENIDEQ--LIVELYSK 200 >gi|54022803|ref|YP_117045.1| 30S ribosomal protein S4 [Nocardia farcinica IFM 10152] gi|61215422|sp|Q5Z1L0|RS4_NOCFA RecName: Full=30S ribosomal protein S4 gi|54014311|dbj|BAD55681.1| putative ribosomal protein S4 [Nocardia farcinica IFM 10152] Length = 201 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/205 (39%), Positives = 116/205 (56%), Gaps = 15/205 (7%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R+S + ++D G+ + R R Y PG HG R + K S + LQL+ KQK + YG Sbjct: 10 RKSRRLRVDLVGGDQAFER-------RPYPPGQHG-RARIKESEYLLQLQEKQKARFSYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR ++EA+R +G T NL+ LE+RLD +VYRA T ARQ V+H H LV Sbjct: 62 -VMEKQFRRYYEEANRQKGKTGDNLLRLLETRLDNVVYRAGLARTRRQARQLVSHGHFLV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 NG V++ SYR + D+I+VK+KS L + L ER VP ++ V + + Sbjct: 121 NGVKVDVPSYRVSQYDIIDVKEKSLSTLPFQVARETLGERPVPGWLQVLPGRLRILVHQE 180 Query: 183 PSSLK-DVPYPVIMQPNLVVEFYSR 206 P + DVP +Q L+VE+YS+ Sbjct: 181 PERAQIDVP----LQEQLIVEYYSK 201 >gi|323144988|ref|ZP_08079548.1| ribosomal protein S4 [Succinatimonas hippei YIT 12066] gi|322415267|gb|EFY06041.1| ribosomal protein S4 [Succinatimonas hippei YIT 12066] Length = 207 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 17/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR-------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M+K K+ RR G +L+ + K ++T PG HG K + S +G+QLR Sbjct: 1 MAKYTGPALKLSRREGVDLFLKSGVRAIETKCKLDT---APGQHGAN-KPRLSDYGMQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +K+A + G+T NL+ LESRLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKKAAKMSGNTGENLLQLLESRLDNVVYRMGFGSTRMEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVN 171 Q V+H+ + VN VNI SY+ + DVI V++K+K+ + A L+ + P +I V+ Sbjct: 116 QLVSHKAITVNDHVVNIPSYQVQPSDVIAVREKAKKQLRIKAAIDLSGQRALKPTWIDVD 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 H+ M T+ P + P ++ L+VE YS+ Sbjct: 176 HNAMKGTYKNKPERSE---LPSDIKEQLIVELYSK 207 >gi|256380568|ref|YP_003104228.1| 30S ribosomal protein S4 [Actinosynnema mirum DSM 43827] gi|255924871|gb|ACU40382.1| ribosomal protein S4 [Actinosynnema mirum DSM 43827] Length = 201 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I RR+ +L G ++ R Y PG HG+ R + Y LQL+ KQK + Sbjct: 1 MARYTGPATRISRRLKVDLIGGDQA-FERRPYPPGQHGRGRIKESEYL-LQLQEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+F +KEA R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-ILEKQFVRYYKEAVRRTGKTGENLLQILESRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 LVNG VNI SY+ + D+I+VK KS L A + +R VP ++ V N+ Sbjct: 118 FLVNGHKVNIPSYQVSKFDIIDVKPKSLPLLPFEAARASFGDRPVPAWLQVVPSNLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + + PV Q L+VE YS+ Sbjct: 178 HQLPERAQ-IDTPVTEQ--LIVELYSK 201 >gi|188996212|ref|YP_001930463.1| ribosomal protein S4 [Sulfurihydrogenibium sp. YO3AOP1] gi|226695086|sp|B2V7I6|RS4_SULSY RecName: Full=30S ribosomal protein S4 gi|188931279|gb|ACD65909.1| ribosomal protein S4 [Sulfurihydrogenibium sp. YO3AOP1] Length = 204 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 3/173 (1%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMKKYYGDISEK 68 K+ RR+G + G +S R++ PG HG+ + + K S +G++L+ KQK++ YG I E Sbjct: 10 KVSRRLGVFVGGDIES-FQKRNFPPGQHGRTQGRKKLSDYGVRLQEKQKLRFLYGGIREG 68 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +F+ F+ A ++ G+T L+ LE RLD +VYR F T ARQ V H H LVNG+ V Sbjct: 69 QFKRYFERASKAAGNTGTVLLQLLERRLDNVVYRLGFAKTRLQARQLVKHGHFLVNGKKV 128 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFV 180 +I SY +GD+IEV++KSK+L E + + R VP ++ ++ DN V Sbjct: 129 DIPSYELDKGDIIEVREKSKKLEVFKENLESRDPRSVPRWLEIDKDNFRGKVV 181 >gi|158337110|ref|YP_001518285.1| 30S ribosomal protein S4 [Acaryochloris marina MBIC11017] gi|189045361|sp|B0C9F5|RS4_ACAM1 RecName: Full=30S ribosomal protein S4 gi|158307351|gb|ABW28968.1| 30S ribosomal protein S4 [Acaryochloris marina MBIC11017] Length = 202 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ RK K S + QL KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQARK-KRSEYAAQLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R+ G T L+ LE RLD ++R PTI AARQ VNH H Sbjct: 58 NYG-LSERQLLRYVRKARRAGGSTGQTLLQLLEMRLDNTIFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 VLVNGR V+I SY+C+ GDVI+ + + K + + ++ LA ++P ++ + + + Sbjct: 117 VLVNGRVVSIASYQCRPGDVIQSRDRDASRKLIETHMQFPGLA--NIPTHLDFDKNTLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVNGVIEREWIALEINELLVVEYYSR 200 >gi|326792579|ref|YP_004310400.1| ribosomal protein S4 [Clostridium lentocellum DSM 5427] gi|326543343|gb|ADZ85202.1| ribosomal protein S4 [Clostridium lentocellum DSM 5427] Length = 208 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK K RR G+ L+ + + V R Y PG HGQ +K K S +GLQLR Sbjct: 1 MARYIGSKCKQCRREGKKLFLKGERCFSAACSVEKRPYAPGQHGQAKK-KLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E KFR+ F+EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 60 KQKAKRIYG-VLEGKFRTYFEEADRKQGITGENLLRLLELRLDNVCYRIGLGRSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHD 173 V H + VNG+ VNI SY+ K GDVIEVK+ +K L A R VPE++ + + Sbjct: 119 VVRHNLITVNGKRVNIPSYQVKVGDVIEVKEDAKSFERFKLTAEVTGSRIVPEWLEGDIE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ T +P+ + + L+VE YS+ Sbjct: 179 NLRGTVKALPTREQ---IDTDIAETLIVELYSK 208 >gi|197303838|ref|ZP_03168874.1| hypothetical protein RUMLAC_02577 [Ruminococcus lactaris ATCC 29176] gi|197297131|gb|EDY31695.1| hypothetical protein RUMLAC_02577 [Ruminococcus lactaris ATCC 29176] Length = 181 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 17 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAKQMEGMTGANLMIILESRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +V+R T ARQ V+H+HVLVNG+ VNI SY K GD IE+K+ S++ +LE Sbjct: 76 VVFRLGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKENKKGSQRYKEILE 135 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A+ A VPE++ + +N+ T +P+ DVP + L+VE YS+ Sbjct: 136 AT--AGNMVPEWLEADAENLKGTVKELPAREAIDVP----VDEMLIVELYSK 181 >gi|313904924|ref|ZP_07838295.1| ribosomal protein S4 [Eubacterium cellulosolvens 6] gi|313470181|gb|EFR65512.1| ribosomal protein S4 [Eubacterium cellulosolvens 6] Length = 197 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 9/173 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L RRK S +G+QLR KQK K YG + EK FR+ + +ADR +G T NL++ LE R Sbjct: 32 LRNNRRKI--SEYGMQLREKQKAKFIYG-VLEKPFRNYYAKADRMKGQTGDNLMALLEMR 88 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD +++R T ARQ V+H+ V VNG+ VNI SY+ K GDVIE+K+ K + + Sbjct: 89 LDNVIFRLALARTRKEARQIVDHKFVTVNGKVVNIPSYQVKPGDVIEIKESKKTTQRMKD 148 Query: 156 -ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A A R VP ++ VN D + T ++P+ + DVP + +VE YS+ Sbjct: 149 VADATAGRVVPAWLDVNADALQGTVKQVPTRDMIDVP----VDDMSIVELYSK 197 >gi|305679764|ref|ZP_07402574.1| ribosomal protein S4 [Corynebacterium matruchotii ATCC 14266] gi|305660384|gb|EFM49881.1| ribosomal protein S4 [Corynebacterium matruchotii ATCC 14266] Length = 203 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 114/198 (57%), Gaps = 11/198 (5%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G K+ + R Y PG G R + K S + LQL+ KQK K YG + EK+FR Sbjct: 13 RRLRVDLVGGSKA-YDKRPYPPGQAG-RNRIKESEYLLQLQEKQKAKYTYG-VLEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H LVNG+ VN+ S Sbjct: 70 YYAEANRMPGKTGENLVILLEARLDNVVYRAGLARTRRQARQLVSHGHFLVNGKKVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQ---LAERDVPEYISVNHDNMVATFVRIPSSLK-D 188 YR + D+I+V+ KS + EA++ A++ +P ++ V + ++P + D Sbjct: 130 YRVSQYDIIDVRDKSHTMLWFEEATENLVDADKVIPAWLQVVPSTLRILVHQLPERAQID 189 Query: 189 VPYPVIMQPNLVVEFYSR 206 VP +Q L+VE YS+ Sbjct: 190 VP----LQEQLIVELYSK 203 >gi|238922856|ref|YP_002936369.1| 30S ribosomal protein S4 [Eubacterium rectale ATCC 33656] gi|259495279|sp|C4ZBU5|RS4_EUBR3 RecName: Full=30S ribosomal protein S4 gi|238874528|gb|ACR74235.1| 30S ribosomal protein S4 [Eubacterium rectale ATCC 33656] gi|291523756|emb|CBK89343.1| SSU ribosomal protein S4P [Eubacterium rectale DSM 17629] gi|291528778|emb|CBK94364.1| SSU ribosomal protein S4P [Eubacterium rectale M104/1] Length = 197 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+ +K+AD+ +G T NL++ LESR+D + Sbjct: 34 RANRKVSEYGLQLREKQKAKFIYG-VLEKPFRNYYKKADQMKGLTGLNLMTILESRIDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 ++R F T ARQ V+H+ V VNG+ VNI SY K GDVIE+K+ K + + ++ Sbjct: 93 IFRLGFARTRKEARQIVDHKFVTVNGKVVNIPSYLVKAGDVIEIKESKKNTQRMKDIVEV 152 Query: 160 A-ERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 A R VPE++ V+ + + T +P+ + DVP + L+VE YS+ Sbjct: 153 AGGRIVPEWLDVDAEKLQGTVKDLPTREQIDVP----VDEMLIVELYSK 197 >gi|322436519|ref|YP_004218731.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX9] gi|321164246|gb|ADW69951.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX9] Length = 210 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 6/185 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 K PV R++ PG HGQ RK K +GLQLR KQK K+ Y + E +FR+ +++A G Sbjct: 30 KCPVEKRNFPPGQHGQSRKVKKVVGYGLQLREKQKAKRIYFTL-ETQFRAYYQKAANKTG 88 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE+RLD + YR + ARQ V H H+ VNGR VNI S++CK GD I Sbjct: 89 VTGDLLLQQLETRLDNVCYRLGLATSRRQARQVVRHGHIQVNGRKVNIPSFQCKVGDEIA 148 Query: 143 VKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V++ SK L+ A A ++ +N D + V +P +DV PV Q L+V Sbjct: 149 VREGSKTLSFFETAKDFAGGLQSVTWLDINRDTLSGKVVMLPKR-EDVQLPVNEQ--LIV 205 Query: 202 EFYSR 206 E YS+ Sbjct: 206 ELYSK 210 >gi|254431650|ref|ZP_05045353.1| ribosomal protein S4 [Cyanobium sp. PCC 7001] gi|197626103|gb|EDY38662.1| ribosomal protein S4 [Cyanobium sp. PCC 7001] Length = 188 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 10/180 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 RSY PG HGQ R+ K S + ++L KQK++ YG ISE++ K+A G + NL+ Sbjct: 14 RSYPPGQHGQARR-KRSEYAIRLEEKQKLRFNYG-ISERQLVRYVKKARAQGGSSGTNLL 71 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--S 147 LE+RLD I +R F PT+ ARQ VNH HV VNGR V+I SY+CK GDV+ ++++ S Sbjct: 72 KLLENRLDNICFRLGFGPTVPGARQLVNHGHVTVNGRVVDIASYQCKPGDVVAIRERKQS 131 Query: 148 KQLA-SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 K+LA LE LA ++P ++ ++ + A + S + + + LVVEFYSR Sbjct: 132 KKLAEGNLEFPGLA--NIPPHLELDKAKLSAKVI---SKCEREWVALEINELLVVEFYSR 186 >gi|167759834|ref|ZP_02431961.1| hypothetical protein CLOSCI_02197 [Clostridium scindens ATCC 35704] gi|167662453|gb|EDS06583.1| hypothetical protein CLOSCI_02197 [Clostridium scindens ATCC 35704] Length = 181 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/170 (42%), Positives = 99/170 (58%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ FK+A G T NL+ LESRLD Sbjct: 17 KRSNRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYFKKASHMSGMTGENLMVLLESRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R T ARQ V+H+H+LVNG+ +NI SY K GDVIE+K+K K E + Sbjct: 76 VVFRLGLARTRREARQIVDHKHILVNGKQINIPSYLIKAGDVIEIKEKHKSSPRYKEIVE 135 Query: 159 L-AERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VP+++ + +N+ T +P DVP + L+VE YS+ Sbjct: 136 VTGGRLVPDWLEADLENLKGTVKELPKREAIDVP----VDEMLIVELYSK 181 >gi|186682136|ref|YP_001865332.1| 30S ribosomal protein S4 [Nostoc punctiforme PCC 73102] gi|226699095|sp|B2J1M8|RS4_NOSP7 RecName: Full=30S ribosomal protein S4 gi|186464588|gb|ACC80389.1| ribosomal protein S4 [Nostoc punctiforme PCC 73102] Length = 202 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGD-LPGLTRKSAR-RAYPPGQHGQNRK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRLGIAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK---QKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR VNI SY+C+ G+VI V+ Q K + + L+ LA ++P ++ + + +V Sbjct: 117 VTVNGRVVNIASYQCRPGEVIAVRDRAQSRKLVEANLQYPGLA--NLPSHLEFDKNKLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ S ++ + + LVVE+YSR Sbjct: 175 ---KVNSVIEREWVALQVNELLVVEYYSR 200 >gi|320109000|ref|YP_004184590.1| 30S ribosomal protein S4 [Terriglobus saanensis SP1PR4] gi|319927521|gb|ADV84596.1| ribosomal protein S4 [Terriglobus saanensis SP1PR4] Length = 206 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 17/210 (8%) Query: 5 ESSKHKIDRRIGENL--WGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 E SK KI R +G L G+P + + R+Y PG HGQ RKSKP+ F LQLR KQK+ +Y Sbjct: 3 ERSKFKIQRALGIELPGLGKPGA-LEKRNYPPGQHGQARKSKPTEFALQLREKQKLLFHY 61 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G E+ R + RS + + L+S LE RLD IV+R F ++ AARQ V+H HVL Sbjct: 62 GLREEQLRRFVRDARRRSTTNWAETLVSLLERRLDNIVFRLGFARSMAAARQLVSHGHVL 121 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYI-----SVNHDNMV 176 VNGR V+IGS + GD + + + + EAS+ A R +P Y+ SVNH ++ Sbjct: 122 VNGRPVSIGSVVLRLGDAVGLTDYAA--GEMTEASRSAPRLSLPSYLQFPEPSVNHHGVM 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P S + +P+ ++ V E+Y++ Sbjct: 180 MS---LPGS-EHIPFEFNIRQ--VAEYYAK 203 >gi|18311359|ref|NP_563293.1| 30S ribosomal protein S4 [Clostridium perfringens str. 13] gi|110801306|ref|YP_697066.1| 30S ribosomal protein S4 [Clostridium perfringens ATCC 13124] gi|168215204|ref|ZP_02640829.1| ribosomal protein S4 [Clostridium perfringens CPE str. F4969] gi|168216659|ref|ZP_02642284.1| ribosomal protein S4 [Clostridium perfringens NCTC 8239] gi|182626935|ref|ZP_02954668.1| ribosomal protein S4 [Clostridium perfringens D str. JGS1721] gi|26399584|sp|Q8XHV0|RS4A_CLOPE RecName: Full=30S ribosomal protein S4 A gi|123049591|sp|Q0TMS4|RS4A_CLOP1 RecName: Full=30S ribosomal protein S4 A gi|18146043|dbj|BAB82083.1| 30S ribosomal protein S4 [Clostridium perfringens str. 13] gi|110675953|gb|ABG84940.1| 30S ribosomal protein S4 [Clostridium perfringens ATCC 13124] gi|170713408|gb|EDT25590.1| ribosomal protein S4 [Clostridium perfringens CPE str. F4969] gi|177907725|gb|EDT70340.1| ribosomal protein S4 [Clostridium perfringens D str. JGS1721] gi|182381248|gb|EDT78727.1| ribosomal protein S4 [Clostridium perfringens NCTC 8239] Length = 206 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 VNH H LVNG+ V+I S++ DVI V +KS+ AE + +P+++ N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDVITVCEKSRGSERF---KMFAENPKALPKWLEANV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N V P+ +D+ PV L+VE YS+ Sbjct: 176 ENFEGKVVAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|94676532|ref|YP_588800.1| ribosomal protein S4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|152060936|sp|Q1LTB4|RS4_BAUCH RecName: Full=30S ribosomal protein S4 gi|94219682|gb|ABF13841.1| ribosomal protein S4 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 206 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 6/174 (3%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R K + S +GLQLR KQK+++ YG I E++FR+ ++EA R +G+T +L+ LE Sbjct: 38 PGQHGAR-KPRLSDYGLQLREKQKVRRIYG-ILERQFRNYYQEAARLKGNTGESLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 SRLD +VYR F T +RQ V+H+ ++VN VNI SY+ D I ++ K+K+ + + Sbjct: 96 SRLDNVVYRMGFGATRAESRQLVSHKAIMVNNHIVNIASYQVAINDKISIRDKAKKQSRI 155 Query: 154 LEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +LAE R+ P ++ V+ M F +IP + + + +++VE YS+ Sbjct: 156 RASLELAEQREKPTWLEVDIVKMEGIFKKIPERIHLSAH---INEHMIVELYSK 206 >gi|225571581|ref|ZP_03780577.1| hypothetical protein CLOHYLEM_07679 [Clostridium hylemonae DSM 15053] gi|225159658|gb|EEG72277.1| hypothetical protein CLOHYLEM_07679 [Clostridium hylemonae DSM 15053] Length = 181 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 17 KRSNRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYTKAKQMSGMTGENLMILLESRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +V+R T ARQ V+H+HV+VNG+ +NI SY K GDV+E+K+K K + +LE Sbjct: 76 VVFRMGLARTRREARQIVDHKHVMVNGKQINIPSYIVKAGDVVEIKEKHKSSPRYKGILE 135 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VP+++ V+ +N+ T +P+ DVP + L+VE YS+ Sbjct: 136 VT--GGRLVPDWLEVDTENLKGTVKELPARDAIDVP----VDEMLIVELYSK 181 >gi|320173940|gb|EFW49116.1| SSU ribosomal protein S4p (S9e) [Shigella dysenteriae CDC 74-1112] Length = 152 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 5/156 (3%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 +R KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T Sbjct: 1 MREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 59 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISV 170 ARQ V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V Sbjct: 60 ARQLVSHKAIMVNGRIVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 119 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M TF R P D+ + +L+VE YS+ Sbjct: 120 DAGKMEGTFKRKPER-SDLSADI--NEHLIVELYSK 152 >gi|240047378|ref|YP_002960766.1| 30S ribosomal protein S4 [Mycoplasma conjunctivae HRC/581] gi|239984950|emb|CAT04943.1| 30S ribosomal protein S4 [Mycoplasma conjunctivae] Length = 206 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 117/212 (55%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN--TRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ K RR+G ++ K V R Y PG HG R+ K S +G+ L+ KQK+ Sbjct: 1 MSRYTGPVFKKSRRLGFSILESGKEFVKGKQRKYAPGQHGPTRRYKLSDYGIHLQEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SEK+FR+ F +A + G N + LESR D +VYR+ F T ARQ VNH Sbjct: 61 RFMYG-VSEKQFRNTFNKAIKKPGIAGTNFLQALESRFDNVVYRSGFAETRKQARQLVNH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMV 176 H L+NG+ VNI S + K GD E+ K++ K +V S L ++ + ++ V+ N Sbjct: 120 GHFLLNGKKVNIPSIQLKPGDSFELTSKKEGKIRKNVQILSALEKKTIASWVEVDVKNFK 179 Query: 177 ATFVRIP--SSLKDVPYPVIMQPNLVVEFYSR 206 A +R+P S L ++ +L+VEFYS+ Sbjct: 180 AKLIRLPERSELNQE-----IKESLIVEFYSK 206 >gi|260589250|ref|ZP_05855163.1| ribosomal protein S4 [Blautia hansenii DSM 20583] gi|331082658|ref|ZP_08331781.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540331|gb|EEX20900.1| ribosomal protein S4 [Blautia hansenii DSM 20583] gi|330400277|gb|EGG79919.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 6_1_63FAA] Length = 197 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 104/171 (60%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ +K+AD+ G T NL+ LE+RLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYKKADQKPGQTGENLMIMLETRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R T ARQ V+H+HV+VNG+ VNI SY K GDVIE+K+K S++ +LE Sbjct: 92 VIFRMGLARTRKEARQIVDHKHVMVNGKQVNIPSYLVKAGDVIEIKEKCKGSQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R VP ++ ++ + + +P+ +++ PV L+VE YS+ Sbjct: 152 VT--GGRLVPAWLDIDQEALKGEVKALPTR-EEIDVPV--DEMLIVELYSK 197 >gi|256847990|ref|ZP_05553434.1| ribosomal protein S4 [Lactobacillus coleohominis 101-4-CHN] gi|256715050|gb|EEU30027.1| ribosomal protein S4 [Lactobacillus coleohominis 101-4-CHN] Length = 202 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG R+ S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRPYAPGDHGNDRRGSLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++FK A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFRNLFKRAGKIKEGTHGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY VI V++KSK L +++ + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVSVDQVIGVREKSKDL-DIIKNAVDAVVARPSYVEFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P+ +D+ + L+VEFY++ Sbjct: 178 VRLPAR-EDMNADI--DEALIVEFYNK 201 >gi|113952789|ref|YP_729847.1| 30S ribosomal protein S4 [Synechococcus sp. CC9311] gi|123327937|sp|Q0ICH5|RS4_SYNS3 RecName: Full=30S ribosomal protein S4 gi|113880140|gb|ABI45098.1| ribosomal protein S4 [Synechococcus sp. CC9311] Length = 202 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRIGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SK LA L+ LA +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKAGDVIAIRERKCSKLLAEANLQFPGLA--NVPPHLELDKPKLSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 175 KVI---GRAEREWVALEINELLVVEYYSR 200 >gi|257866598|ref|ZP_05646251.1| ribosomal protein S4 [Enterococcus casseliflavus EC30] gi|257872886|ref|ZP_05652539.1| ribosomal protein S4 [Enterococcus casseliflavus EC10] gi|257876202|ref|ZP_05655855.1| ribosomal protein S4 [Enterococcus casseliflavus EC20] gi|325567299|ref|ZP_08143966.1| 30S ribosomal protein S4 [Enterococcus casseliflavus ATCC 12755] gi|257800556|gb|EEV29584.1| ribosomal protein S4 [Enterococcus casseliflavus EC30] gi|257807050|gb|EEV35872.1| ribosomal protein S4 [Enterococcus casseliflavus EC10] gi|257810368|gb|EEV39188.1| ribosomal protein S4 [Enterococcus casseliflavus EC20] gi|325158732|gb|EGC70878.1| 30S ribosomal protein S4 [Enterococcus casseliflavus ATCC 12755] Length = 203 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSETGKE-LARRPYAPGQHGPNSRGKKSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HVLV+G+ V+I SY + G VI V++KS+ ++++ EA + A ++S + + + + Sbjct: 119 HVLVDGKRVDIPSYHVEVGQVISVREKSQNISTIKEAVE-ATAGRASFVSFDSEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D + LVVEFY++ Sbjct: 178 TRLPE--RD-ELSAEVDEALVVEFYNQ 201 >gi|154483162|ref|ZP_02025610.1| hypothetical protein EUBVEN_00863 [Eubacterium ventriosum ATCC 27560] gi|149735970|gb|EDM51856.1| hypothetical protein EUBVEN_00863 [Eubacterium ventriosum ATCC 27560] Length = 197 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 11/171 (6%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K S +GLQLR KQK K YG + EK FR+ +++A + G T NL+ LE+RLD + Sbjct: 34 RSSRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYQKAQKKPGMTGENLMIILETRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLEA 156 ++R F T ARQ V+H+HVLVNG+ VNI SY K GDVIE+K+K S++ ++E Sbjct: 93 IFRMGFARTRKEARQIVDHKHVLVNGKQVNIPSYLIKVGDVIEIKEKCKGSQRYKDIIEV 152 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + R VP ++ V+ +N+ +P + DVP + L+VE YS+ Sbjct: 153 T--GGRTVPAWVEVDQENLKGEIKELPKRDEIDVP----VDEMLIVELYSK 197 >gi|167748456|ref|ZP_02420583.1| hypothetical protein ANACAC_03200 [Anaerostipes caccae DSM 14662] gi|317472011|ref|ZP_07931343.1| ribosomal protein S4 [Anaerostipes sp. 3_2_56FAA] gi|167652448|gb|EDR96577.1| hypothetical protein ANACAC_03200 [Anaerostipes caccae DSM 14662] gi|316900415|gb|EFV22397.1| ribosomal protein S4 [Anaerostipes sp. 3_2_56FAA] Length = 197 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 105/172 (61%), Gaps = 12/172 (6%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 G R+KS+ +GLQLR KQK K YG + EK FR+ + +A++ +G T NL++ LE RLD Sbjct: 35 GNRKKSE---YGLQLREKQKAKFIYG-VLEKPFRNYYAKAEKMKGQTGVNLMTLLELRLD 90 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVL 154 +++R F T RQ V+H+HVLVNG++VNI SYR GDVIE+K+ K + +L Sbjct: 91 NVLFRLGFGRTRKECRQIVDHKHVLVNGKTVNIPSYRVSVGDVIEIKENHKTSPRYKEIL 150 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E + R VP ++ N + + T +P+ +++ PV L+VE YS+ Sbjct: 151 EVT--GGRMVPSWLEANQEALSGTVKELPAR-EEIDVPV--NETLIVELYSK 197 >gi|153816224|ref|ZP_01968892.1| hypothetical protein RUMTOR_02473 [Ruminococcus torques ATCC 27756] gi|145846407|gb|EDK23325.1| hypothetical protein RUMTOR_02473 [Ruminococcus torques ATCC 27756] Length = 181 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 17 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAKQMEGMTGENLMRILESRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R T ARQ V+H+HVLVNG+ VNI SY K GD IE+K+ S++ +LE Sbjct: 76 VIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKENKKGSQRYKDILE 135 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A+ VPE++ V+ +N+ + +P+ DVP + L+VE YS+ Sbjct: 136 AT--GSNMVPEWLDVDAENLKGSVKELPAREAIDVP----VDEMLIVELYSK 181 >gi|254283192|ref|ZP_04958160.1| ribosomal protein S4 [gamma proteobacterium NOR51-B] gi|219679395|gb|EED35744.1| ribosomal protein S4 [gamma proteobacterium NOR51-B] Length = 154 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 5/158 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +QLR KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T Sbjct: 1 MQLREKQKVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLECRLDNVVYRMGFGSTR 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYI 168 ARQ V H+ +L+N VNI SY+ K GDV+ +++K+K+ V A LAE R P +I Sbjct: 60 AEARQLVAHKGILINNAVVNIPSYQVKPGDVVSIREKAKKQLRVQAALSLAEQRGEPVWI 119 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VN++ + TF P D+ + NL+VE YS+ Sbjct: 120 EVNNEKLEGTFKAKPER-ADLSSEI--NENLIVELYSK 154 >gi|209524168|ref|ZP_03272718.1| ribosomal protein S4 [Arthrospira maxima CS-328] gi|209495259|gb|EDZ95564.1| ribosomal protein S4 [Arthrospira maxima CS-328] Length = 202 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 121/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ L G + R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVARRLGD-LPGLTRKTAR-RAYPPGQHGQARR-KRSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R+ G T L+ +LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LSERQLLRYVRKARRASGSTGQVLLQYLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VNG+ V+I SY+C+ G+ I V+ + K V L+ LA +VP ++ ++ +N+ A Sbjct: 117 ITVNGKVVDIASYQCRPGETIGVRNRDKSREMVKANLQYPGLA--NVPSHLELDKNNLTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + ++ + + LVVE+YSR Sbjct: 175 T---VNGVIEREWVALSINELLVVEYYSR 200 >gi|126656084|ref|ZP_01727468.1| 30S ribosomal protein S4 [Cyanothece sp. CCY0110] gi|126622364|gb|EAZ93070.1| 30S ribosomal protein S4 [Cyanothece sp. CCY0110] Length = 202 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQGRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A RS T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V+VNGR VNI SY+C+ GDVI V+ K + + + ++ LA ++PE++ + + + Sbjct: 117 VMVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLA--NLPEHLEFDKNTLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + +K + + LVVE+YSR Sbjct: 175 ---KVNNVIKREWVALQINELLVVEYYSR 200 >gi|90994410|ref|YP_536900.1| ribosomal protein S4 [Porphyra yezoensis] gi|122194732|sp|Q1XDR8|RR4_PORYE RecName: Full=30S ribosomal protein S4, chloroplastic gi|90818974|dbj|BAE92343.1| 30S ribosomal protein S4 [Porphyra yezoensis] Length = 201 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + + RSY PG HGQ+ + KPS + ++L KQK++ Sbjct: 1 MSRYRGPRVRISRRLGD-LPGLSRKAIK-RSYPPGEHGQKSR-KPSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K A + +G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LSEKQLFKYVKAAKKLQGSTGQILLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 + +NG+ V+I SY+CK G+ I VK + K + + L LA ++P ++ +N N+ Sbjct: 117 ICINGQVVSICSYQCKPGESISVKNQEASRKLVENYLAFPGLA--NIPSHLELNKSNLSG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + D + V +Q N LV+E+YSR Sbjct: 175 KV----NGVIDREW-VALQLNELLVIEYYSR 200 >gi|330470145|ref|YP_004407888.1| 30S ribosomal protein S4 [Verrucosispora maris AB-18-032] gi|328813116|gb|AEB47288.1| 30S ribosomal protein S4 [Verrucosispora maris AB-18-032] Length = 208 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 8/186 (4%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK P +R + PG HG+ R + Y LQLR KQK ++ YG + EK+FR ++EA + Sbjct: 29 PKCPFESRPFPPGQHGRGRTKETEYL-LQLREKQKARRVYG-VLEKQFRGYYEEAVAKQA 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LESRLD +VYRA + + ARQ V H H VNG+ V+I SYR D+IE Sbjct: 87 KTGEVLLQILESRLDNVVYRAGYAKSRDMARQLVKHGHFTVNGKKVDIPSYRVSAHDIIE 146 Query: 143 VKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLV 200 V+ KSK+L + A ++ + VP ++ M +P+ + D +Q L+ Sbjct: 147 VRAKSKELTPFIVAQAEAGSKTVPAWLEAIPSQMKVLVHSLPARQVIDTQ----VQEQLI 202 Query: 201 VEFYSR 206 VE YS+ Sbjct: 203 VELYSK 208 >gi|145294734|ref|YP_001137555.1| 30S ribosomal protein S4 [Corynebacterium glutamicum R] gi|172044394|sp|A4QBQ6|RS4_CORGB RecName: Full=30S ribosomal protein S4 gi|140844654|dbj|BAF53653.1| hypothetical protein [Corynebacterium glutamicum R] Length = 201 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR + EA+R G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLLQLQEKQKARFIYG-VMEKQFRRYYAEANRRAGKTGENLV 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+++++ S+R + D+I V++KS++ Sbjct: 87 VLLESRLDNVVYRAGLANTRRQARQLVSHGHFTVNGKAIDVPSFRVSQYDIINVREKSQK 146 Query: 150 LASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA L + VP ++ V +N+ ++P + D+P +Q L+VEFYS+ Sbjct: 147 MNWFEEAQDNLVDAVVPAWLQVVPENLRILVHQLPERAQIDIP----LQEQLIVEFYSK 201 >gi|325678657|ref|ZP_08158267.1| ribosomal protein S4 [Ruminococcus albus 8] gi|324109707|gb|EGC03913.1| ribosomal protein S4 [Ruminococcus albus 8] Length = 198 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 105/169 (62%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 ++ K S +GLQL+ KQK++ YG + EK+F F+ A + G NL++ LESRLD++V Sbjct: 36 KRKKVSEYGLQLKEKQKLRFIYG-VLEKQFHHYFEIAQKMEGQAGTNLLTILESRLDSVV 94 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEAS 157 +R T ARQ V H H LVNG+ V+I SYR K GDVI +K+ SK + ++EA+ Sbjct: 95 FRMGLSMTRREARQLVVHGHFLVNGKRVDIPSYRVKAGDVISLKENSKKSPKFKQIIEAT 154 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A R VP ++ ++ +N A VR+P +D+ Y + + +L+VE YS+ Sbjct: 155 --AGRVVPTWLDMDKENQTAKVVRMPVK-EDLDYEI--EEHLIVELYSK 198 >gi|291460744|ref|ZP_06600134.1| ribosomal protein S4 [Oribacterium sp. oral taxon 078 str. F0262] gi|291416703|gb|EFE90422.1| ribosomal protein S4 [Oribacterium sp. oral taxon 078 str. F0262] Length = 212 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 11/174 (6%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L QRRK S +GLQLR KQK K YG + EK FR+ + +A+R G T NL+ LESR Sbjct: 47 LRNQRRKM--SEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAERMSGQTGENLMILLESR 103 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLAS 152 LD++++R T ARQ V HRHV VNG+ VNI SY GDVI +K+ K + Sbjct: 104 LDSVIFRMGLARTRREARQVVGHRHVTVNGKLVNIPSYLVSAGDVIAIKESMKSAQRYKD 163 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +LE + A R VP ++ V+ + + AT ++P +++ PV L+VE YS+ Sbjct: 164 ILEVT--AGRMVPAWLEVDQEKLSATVKQLPHR-EEIDVPV--NEMLIVELYSK 212 >gi|37912969|gb|AAR05301.1| ribosomal protein S4 [uncultured marine gamma proteobacterium EB000-45B06] gi|40063200|gb|AAR38037.1| ribosomal protein S4 [uncultured marine bacterium 562] Length = 207 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 121/214 (56%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ ++ RR G +L+ + +S N S PG+ R+ + S +GLQLR K Sbjct: 1 MARYTGPTLRLSRREGTDLYLKSGVRAIESKCNMDS-PPGVAAGARRGRLSDYGLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + EK+FR+ +K+A ++G+T NL+S LE R+D +VYR F T ARQ Sbjct: 60 QKVRRMYG-VLEKQFRNYYKKAASTKGNTGENLLSLLEKRMDNVVYRMGFGSTRAEARQM 118 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVNH 172 V+H+ VNG VNI SY+ K GD ++V+ K ++A+ L+ + A R+ +++ V+ Sbjct: 119 VSHKAFKVNGEVVNIPSYQMKAGDEVQVRDNKKGHLRIAAALKIA--ATREDCDWLEVDE 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ F +P + NL++E YS+ Sbjct: 177 ANLKGVFKSVPDR---TDLSTEINENLIIELYSK 207 >gi|118468301|ref|YP_885905.1| 30S ribosomal protein S4 [Mycobacterium smegmatis str. MC2 155] gi|171472975|sp|A0QSL7|RS4_MYCS2 RecName: Full=30S ribosomal protein S4 gi|118169588|gb|ABK70484.1| ribosomal protein S4 [Mycobacterium smegmatis str. MC2 155] Length = 201 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 115/208 (55%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+G +L G +S R Y PG HG R + K S + QL+ KQK + Sbjct: 1 MARYTGPATRKSRRLGVDLVGGDQS-FEKRPYPPGQHG-RARIKESEYRQQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 SYG-VMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 LVNG V+I SYR + D+I+VK+KS A + A ER +P ++ V + Sbjct: 118 FLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP + L+VE YS+ Sbjct: 178 HQLPERAQIDVP----LTEQLIVELYSK 201 >gi|159902949|ref|YP_001550293.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9211] gi|226699105|sp|A9BE29|RS4_PROM4 RecName: Full=30S ribosomal protein S4 gi|159888125|gb|ABX08339.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9211] Length = 202 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/209 (39%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RS PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSNPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARSLEGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNG+ ++I SY+CK GDVI +++K SK+LA LE LA +VP ++ M A Sbjct: 117 VTVNGKVLDIASYQCKPGDVISIREKKGSKKLAEGNLEFPGLA--NVPPHLEFEKSKMSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 175 ---KITGKCEREWVAIEINELLVVEYYSR 200 >gi|257870579|ref|ZP_05650232.1| ribosomal protein S4 [Enterococcus gallinarum EG2] gi|257804743|gb|EEV33565.1| ribosomal protein S4 [Enterococcus gallinarum EG2] Length = 203 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSETGKE-LARRPYAPGQHGPNSRGKKSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G VI V++KS+ ++++ EA + A ++S + + + + Sbjct: 119 HILVDGKRVDIPSYHVEVGQVISVREKSQNISTIKEAIE-ATTGRTAFVSFDDEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D + LVVEFY++ Sbjct: 178 TRLPE--RD-ELTAEVDEALVVEFYNQ 201 >gi|330837631|ref|YP_004412272.1| 30S ribosomal protein S4P [Spirochaeta coccoides DSM 17374] gi|329749534|gb|AEC02890.1| SSU ribosomal protein S4P [Spirochaeta coccoides DSM 17374] Length = 215 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 97/174 (55%), Gaps = 3/174 (1%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG + R K + +G+QLR KQ +K Y ++ EK+FR F EA R G T NLI LE Sbjct: 44 PGKDPKARTKKMTDYGMQLREKQHLKWTY-EMLEKQFRKTFDEAARIPGKTGENLIVLLE 102 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR F T A Q V+H HV VNG VNI SYR K+GDVI + + +++ + Sbjct: 103 RRLDNVVYRLHFASTRRQASQLVSHGHVFVNGSRVNIRSYRLKDGDVISIGSRGQKMNLI 162 Query: 154 LE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E ++ V ++S++ D M TF+ P D+ + L+VE YSR Sbjct: 163 KENLTEYTRAGVAPWLSLDPDAMKGTFIIAPKR-SDISELADVNEQLIVELYSR 215 >gi|110801849|ref|YP_699635.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] gi|122956505|sp|Q0SQH2|RS4A_CLOPS RecName: Full=30S ribosomal protein S4 A gi|110682350|gb|ABG85720.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] Length = 206 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 VNH H LVNG+ V+I S++ DVI V +KS+ AE + +P+++ N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDVITVCEKSRGSERF---KMFAENPKALPKWLEANV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N + P+ +D+ PV L+VE YS+ Sbjct: 176 ENFEGKVIAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|317501800|ref|ZP_07959986.1| ribosomal protein S4 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088679|ref|ZP_08337589.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896833|gb|EFV18918.1| ribosomal protein S4 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407202|gb|EGG86705.1| 30S ribosomal protein S4 [Lachnospiraceae bacterium 3_1_46FAA] Length = 197 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAKQMEGMTGENLMRILESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R T ARQ V+H+HVLVNG+ VNI SY K GD IE+K+ S++ +LE Sbjct: 92 VIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKENKKGSQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 A+ VPE++ V+ +N+ + +P+ DVP + L+VE YS+ Sbjct: 152 AT--GSNMVPEWLDVDAENLKGSVKELPAREAIDVP----VDEMLIVELYSK 197 >gi|226968687|ref|YP_002808647.1| small subunit ribosomal protein S3 [Micromonas sp. RCC299] gi|226431165|gb|ACO55571.1| small subunit ribosomal protein S3 [Micromonas sp. RCC299] Length = 198 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKS-KPSYFGLQLRAKQKMK 59 M++ + KI RR+GE K P R+YGPG HGQ + K + F ++L+ KQK++ Sbjct: 1 MARYRGPRVKIVRRLGELPGLTTKVP--NRTYGPGQHGQATSTGKLTQFRVRLQEKQKLR 58 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ISEK+ + + A R++G T L+ LE RLD+IVYR F PTI AARQ+V+H Sbjct: 59 YNYG-ISEKQLLTYVRRARRAKGPTGEVLLQMLEMRLDSIVYRLGFAPTIRAARQYVSHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 + VNG++VNI SY C G+ I V+E + VP +++V+ Sbjct: 118 LITVNGQTVNIPSYNCLPGETIASTSN-----PVVENCKTFGGAVPSHLTVDTAKTTGKI 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+ + + + L++EFYSR Sbjct: 173 QRV---ITRSQIALTVNELLIIEFYSR 196 >gi|331699146|ref|YP_004335385.1| 30S ribosomal protein S4 [Pseudonocardia dioxanivorans CB1190] gi|326953835|gb|AEA27532.1| ribosomal protein S4 [Pseudonocardia dioxanivorans CB1190] Length = 201 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 114/204 (55%), Gaps = 13/204 (6%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R+S + K+D G+ + R R Y PG HG+ R + Y LQ++ KQK + YG Sbjct: 10 RKSRRLKVDLVGGDQAFER-------RPYPPGQHGRIRIKETEYL-LQMQEKQKARFAYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR ++EA+R G T NL+ LESRLD +VYRA T ARQ VNH H LV Sbjct: 62 -VLEKQFRRYYEEANRRPGKTGDNLLQILESRLDNVVYRAGLARTRRMARQLVNHGHFLV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRI 182 NG+ VNI SYR + D+I+VK KS + A + L +R +P ++ V N+ ++ Sbjct: 121 NGQKVNIPSYRVGQYDIIDVKPKSLGTDPFIIAKELLGDRPIPAWLQVVPSNLRILVHQL 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + + V Q L+VE YS+ Sbjct: 181 PERAQ-IDTQVTEQ--LIVELYSK 201 >gi|255324778|ref|ZP_05365892.1| ribosomal protein S4 [Corynebacterium tuberculostearicum SK141] gi|311740031|ref|ZP_07713865.1| 30S ribosomal protein S4 [Corynebacterium pseudogenitalium ATCC 33035] gi|255298253|gb|EET77556.1| ribosomal protein S4 [Corynebacterium tuberculostearicum SK141] gi|311305104|gb|EFQ81173.1| 30S ribosomal protein S4 [Corynebacterium pseudogenitalium ATCC 33035] Length = 201 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR+ +L G + R Y PG G R + K S + LQL+ KQK K Sbjct: 1 MARYTGPATRVSRRLRVDLVGGDMA-FERRPYPPGQAG-RNRIKESEYLLQLQEKQKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLERQFRRYYAEANRLPGKTGDNLVILLESRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VNG+++N+ SY+ + D+I+V+ +SK++ +A L + +VP ++ V D + Sbjct: 118 FTVNGKNINVPSYKVTQYDIIDVRDRSKKMEWFEDAQDALIDANVPAWLQVVPDTLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + D+P +Q L+VE YS+ Sbjct: 178 HQLPERAQIDIP----LQEQLIVELYSK 201 >gi|168205206|ref|ZP_02631211.1| ribosomal protein S4 [Clostridium perfringens E str. JGS1987] gi|169347013|ref|ZP_02865955.1| ribosomal protein S4 [Clostridium perfringens C str. JGS1495] gi|169296696|gb|EDS78825.1| ribosomal protein S4 [Clostridium perfringens C str. JGS1495] gi|170663240|gb|EDT15923.1| ribosomal protein S4 [Clostridium perfringens E str. JGS1987] Length = 206 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 VNH H LVNG+ V+I S++ DV+ V +KS+ AE + +P+++ N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDVVTVCEKSRGSERF---KMFAENPKALPKWLEANV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N V P+ +D+ PV L+VE YS+ Sbjct: 176 ENFEGKVVAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|297180260|gb|ADI16479.1| hypothetical protein [uncultured bacterium HF4000_05M23] Length = 208 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 113/211 (53%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP--KSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQK 57 M++ K K RR G L RP K R PG Q+R+ + S +G QLR KQK Sbjct: 1 MARYTGPKCKNCRRFGMKLCSRPAGKCAWERRKSSPGDKSTQQRRRRISEYGTQLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + YG + E++FR+ +K+A R G T L+ LESRLD +VYR F + ARQ V Sbjct: 61 ARAIYG-VLERQFRNYYKKASRLEGVTGDRLLQLLESRLDNVVYRLGFADSRPQARQIVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--LASVLEASQLAERDVPEYISVNHDNM 175 H H+ VNG+ VNI SY+ GD I ++KSK+ L ++ A + +P +++V+ D Sbjct: 120 HGHIRVNGKKVNIPSYQVSPGDRISWREKSKETGLFDIVSAGMGSNSIIPSWLNVDSDKA 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + V +P K + + +VE+YSR Sbjct: 180 LGEVVTLP---KPSDVELAIDTRQIVEYYSR 207 >gi|262038727|ref|ZP_06012087.1| ribosomal protein S4 [Leptotrichia goodfellowii F0264] gi|261747279|gb|EEY34758.1| ribosomal protein S4 [Leptotrichia goodfellowii F0264] Length = 195 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 100/163 (61%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K + +G Q+R KQK + YG + EK+F +++EA R G T L+ +LE RLD +VYR Sbjct: 39 KLTEYGTQMREKQKARFVYG-VMEKQFYKLYEEATRKEGVTGELLLQYLERRLDNVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+L+NG+ VNI SYR K+GDVI +K+ S++LA + E+ + ++ Sbjct: 98 GFGATRRQARQIVSHGHILINGKRVNIASYRVKQGDVISIKENSRELALIKES--VGQKT 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ ++ + A + P V + + +++EFYSR Sbjct: 156 VPGWLELDEAALTAKVLENPGR-DSVDFEI--NEAMIIEFYSR 195 >gi|288870170|ref|ZP_06113170.2| ribosomal protein S4 [Clostridium hathewayi DSM 13479] gi|288868139|gb|EFD00438.1| ribosomal protein S4 [Clostridium hathewayi DSM 13479] Length = 197 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/172 (42%), Positives = 101/172 (58%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A R G NL+ LE RLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKASRMNGMVGENLMILLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 +V+R F T RQ V+H+ +LVNG+ VNI SY K GDVIEVK+K K + V+E Sbjct: 92 VVFRMGFGRTRRETRQMVDHKSILVNGKCVNIPSYLVKAGDVIEVKEKCKGNARFKDVVE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + A R P ++ V+H+N+ T +P+ + DVP + L+VE YS+ Sbjct: 152 TT--AGRLTPAWVDVDHENLRGTVKELPTRDEIDVP----VNEMLIVELYSK 197 >gi|168186545|ref|ZP_02621180.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund] gi|169295481|gb|EDS77614.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund] Length = 196 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 9/185 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ + GL G+R+K S +G QL KQK++ Sbjct: 1 MAKMRQPRFKLSRRLGVNIYGHPKAMKRS----EGLKGRRKKM--SDYGSQLLEKQKVRA 54 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+FR ++A +S+ T L+ LE RLD +VYR F +I ARQ VNH H Sbjct: 55 YYG-VMEKQFRRYVEKAMKSKDVTGDILLKLLECRLDNLVYRIGFANSIRQARQMVNHGH 113 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG V+I SY K GD +E+K+K ++ +L ++P YI ++DN Sbjct: 114 ILVNGSKVDIPSYEVKVGDKVELKEKYRKNEMFFNNFLELRTFELP-YIEKDYDNFSGKL 172 Query: 180 VRIPS 184 +R+P+ Sbjct: 173 IRMPN 177 >gi|284928899|ref|YP_003421421.1| 30S ribosomal protein S4P [cyanobacterium UCYN-A] gi|284809358|gb|ADB95063.1| SSU ribosomal protein S4P [cyanobacterium UCYN-A] Length = 202 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKNP--RRTYPPGQHGQGRR-KRSEYAVRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLIRYMKKARRATGSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHCH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 VLVNGR+VNI SY+C+ GD+I V+ + + + ++ LA ++PE++ + + Sbjct: 117 VLVNGRTVNIASYQCRAGDIISVRNNDNSRRMVEANMQYPGLA--NLPEHLEFDKNTFTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +K + + L+VE+YSR Sbjct: 175 ---KVNDVIKREWVALQINELLIVEYYSR 200 >gi|163791292|ref|ZP_02185706.1| 30S ribosomal protein S4 [Carnobacterium sp. AT7] gi|159873433|gb|EDP67523.1| 30S ribosomal protein S4 [Carnobacterium sp. AT7] Length = 201 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 121/208 (58%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K + +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-IERRPYAPGPHGPNSRKKLTEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F ++F +A + + G N + LE RLD +VYR T +RQ VNH Sbjct: 60 MFG-MNERQFSNLFLKAGKIKEGKHGENFMILLEQRLDNVVYRLGLATTRRQSRQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+LV+G+ V+I SY G VI V++KSK + + A++ L R P+Y++ + + + + Sbjct: 119 HILVDGKRVDIPSYSVSVGQVISVREKSKNMEIIKSAAESLFGR--PDYVTFDVEKLEGS 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R+P L+D + ++VE+YSR Sbjct: 177 YNRLP--LRD-ELSAEIDETIIVEYYSR 201 >gi|269122554|ref|YP_003310731.1| ribosomal protein S4 [Sebaldella termitidis ATCC 33386] gi|268616432|gb|ACZ10800.1| ribosomal protein S4 [Sebaldella termitidis ATCC 33386] Length = 195 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 20/200 (10%) Query: 21 GRPKSPV--NTRSYG--PGLHGQRRKSKPSY----------FGLQLRAKQKMKKYYGDIS 66 R + PV R+ G P + G +KSK +G+QLR KQK + YG I Sbjct: 2 ARDRQPVLKKCRTLGLDPSILGVNKKSKRGLRPNANKKLTDYGIQLREKQKARFVYG-IM 60 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+F +++EA R G T L+ +LE R D +VYR T ARQ V+H H+ +NG+ Sbjct: 61 EKQFYKLYEEATRKEGVTGELLLQYLERRFDNVVYRLGLTTTRRQARQLVSHGHLEINGK 120 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 VNI SYR K+GDVI V++KS+ LA + E+ L ++ VP +++++ + + A + P+ Sbjct: 121 RVNIASYRVKQGDVITVREKSRDLAIIKES--LNQKSVPGWLTLDENALSAKVLENPTR- 177 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + V + + +++EFYSR Sbjct: 178 EAVDFDI--NEAMIIEFYSR 195 >gi|325261520|ref|ZP_08128258.1| ribosomal protein S4 [Clostridium sp. D5] gi|324032974|gb|EGB94251.1| ribosomal protein S4 [Clostridium sp. D5] Length = 197 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 103/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G T NL+ LESRLD Sbjct: 33 KRSNRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAKKMEGMTGENLMILLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R T ARQ V+H+HV+VNG+ VNI SY K GD IE+K+K S++ +LE Sbjct: 92 VMFRMGLARTRKEARQIVDHKHVMVNGKQVNIPSYLVKAGDTIEIKEKHKGSQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + +P+++ V+ +N+ AT +P+ DVP + L+VE YS+ Sbjct: 152 MT--GGNMIPDWLEVDAENLKATVKELPAREAIDVP----VDEMLIVELYSK 197 >gi|238898903|ref|YP_002924585.1| 30S ribosomal subunit protein S4 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259495283|sp|C4K794|RS4_HAMD5 RecName: Full=30S ribosomal protein S4 gi|229466663|gb|ACQ68437.1| 30S ribosomal subunit protein S4 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 206 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 12/177 (6%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG R K + S +GLQLR KQK+++ YG + E++F +KEA R +G+T NL+ LE Sbjct: 38 PGQHGTR-KPRLSDYGLQLREKQKVRRVYG-VLERQFHGYYKEAARLKGNTGENLLQLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD +VYR F T ARQ V H+ +LVN R VNI S+ D + V++K+++ + + Sbjct: 96 RRLDNVVYRIGFGATRAEARQLVTHKAILVNDRVVNIPSFLVSPNDRVSVRRKAQKQSRI 155 Query: 154 LEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 E+ QL A+R+ ++ ++ M+ TF IP VI + +L+VE YS+ Sbjct: 156 KESLQLSAQREELSWLEIDSSEMIGTFKFIPER------AVISGGIDEHLIVELYSK 206 >gi|320528307|ref|ZP_08029469.1| ribosomal protein S4 [Solobacterium moorei F0204] gi|320131221|gb|EFW23789.1| ribosomal protein S4 [Solobacterium moorei F0204] Length = 200 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 105/179 (58%), Gaps = 9/179 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+Y PG HG ++ K +G QLR KQ+++ YG ++E++F ++F +A + G N + Sbjct: 29 RTYAPGQHGPTKRIKLGGYGTQLREKQRIRHMYG-LNERQFSNLFNKASKMEGMAGVNFL 87 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD IVYR T AARQ VNH H+ VNG+ ++I S K I V++ ++ Sbjct: 88 ILLESRLDNIVYRMGLARTRKAARQLVNHGHIEVNGKKLDIPSALIKPESTIAVRENARN 147 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIP--SSLKDVPYPVIMQPNLVVEFYSR 206 + ++ E+ + A +P ++ V+ +N TFVR+P S L + +LVVEFY+R Sbjct: 148 IKAIAESLESA-ITIPAFVEVDKENKKGTFVRLPERSELNQE-----INESLVVEFYNR 200 >gi|317153933|ref|YP_004121981.1| 30S ribosomal protein S4 [Desulfovibrio aespoeensis Aspo-2] gi|316944184|gb|ADU63235.1| ribosomal protein S4 [Desulfovibrio aespoeensis Aspo-2] Length = 208 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K K+ RR G L+ + K R Y PG H R + K S + +QLR Sbjct: 1 MARYTEAKCKLCRREGTKLFLKGDRCYTDKCAYEKRPYPPG-HAGRMRHKMSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR+ ++ AD +G T HNL+ LE RLD +++R F + ARQ Sbjct: 60 KQKVRRMYG-ILEGQFRAYYERADGMKGVTGHNLLMLLERRLDNVIFRLGFANSRDQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VN+ S + K DVI+V+++++++ + EA + +A R P+++ + Sbjct: 119 LVRHGIFQLNGRRVNVPSMQVKAEDVIQVREEARKIPVINEAQEVIARRGCPDWLESDGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N T +PS ++ +P+ Q L+VE YS+ Sbjct: 179 NFKGTVKAMPSR-DNIQFPINEQ--LIVELYSK 208 >gi|116327250|ref|YP_796970.1| 30S ribosomal protein S4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116327290|ref|YP_797010.1| 30S ribosomal protein S4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332096|ref|YP_801814.1| 30S ribosomal protein S4 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280174|sp|Q04PW4|RS4_LEPBJ RecName: Full=30S ribosomal protein S4 gi|122284903|sp|Q055B8|RS4_LEPBL RecName: Full=30S ribosomal protein S4 gi|116119994|gb|ABJ78037.1| 30S Ribosomal protein S4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120034|gb|ABJ78077.1| 30S Ribosomal protein S4 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125785|gb|ABJ77056.1| 30S Ribosomal protein S4 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 207 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 9/202 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 KI RR G +L+ + N + GP +RK K S +G QLR KQK+K+ YG + Sbjct: 10 KIMRREGVDLFLKSSYTFNKDKFHRKGPPGMPTKRKGKVSEYGTQLREKQKLKRAYG-LL 68 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+ ++EA S G T L+ LE RLD +VYR F T AR F+ HRHVLVNG Sbjct: 69 EKQFRNYYEEASHSHGVTGEILLQLLERRLDNVVYRLGFAVTRRQARNFIAHRHVLVNGE 128 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPS 184 V+I SYR GD +E+++K + + + +L++ + +P ++S ++ N +P Sbjct: 129 RVDIPSYRLNVGDKVEIREKFRASTFIADNIRLSQSLQGIPSWLSADYTNFGGDVTALPE 188 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + PV Q ++VE YS+ Sbjct: 189 R-HHIDLPVKEQ--VIVELYSK 207 >gi|88809256|ref|ZP_01124765.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7805] gi|88787198|gb|EAR18356.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7805] Length = 202 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RSY PG HGQ R+ + S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSYPPGQHGQARRKR-SEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+CK GDVI ++++ SK LA L+ LA +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKLLAEGNLQFPGLA--NVPPHLELDKPKLNA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 175 KVV---GRCEREWVALEINELLVVEYYSR 200 >gi|94968282|ref|YP_590330.1| SSU ribosomal protein S4P [Candidatus Koribacter versatilis Ellin345] gi|152060923|sp|Q1IS94|RS4_ACIBL RecName: Full=30S ribosomal protein S4 gi|94550332|gb|ABF40256.1| SSU ribosomal protein S4P [Candidatus Koribacter versatilis Ellin345] Length = 209 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + ++ RR G L+ + K + R++ PG HG+ RK+K +GLQLR Sbjct: 1 MARYKDAVCRLCRREGTKLFLKGPKCFTDKCAIEKRNFAPGQHGKDRKAKIVGYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ Y E +FR+ F++A + +G T L+ LE RLD +VYR F ARQ Sbjct: 61 KQKTKRMY-FAQENQFRNYFEKAAKGQGVTGEMLLQQLERRLDNVVYRLGFASARRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+ VNG+ VNI SY+ D I V++ SK++ + + +L + VP ++ V+ D Sbjct: 120 LVRHGHIAVNGKKVNIPSYQVSVKDEIAVREGSKEMTLLGQIKELTSHTTVPGWLIVDRD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N + +P ++ PV Q L+VE YS+ Sbjct: 180 NWKGSVSSLPRR-DEIQMPVNEQ--LIVELYSK 209 >gi|302524021|ref|ZP_07276363.1| ribosomal protein S4 [Streptomyces sp. AA4] gi|302432916|gb|EFL04732.1| ribosomal protein S4 [Streptomyces sp. AA4] Length = 201 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I RR+ +L G ++ R Y PG HG+ R + Y LQ + KQK + Sbjct: 1 MARYTGPATRISRRLKVDLIGGDQA-FERRPYPPGQHGRGRIKESEYL-LQSQEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F +KEA R G T NL+ LESRLD ++YRA T ARQ V+H H Sbjct: 59 TYG-VLERQFVRYYKEAVRRPGKTGENLLQILESRLDNVIYRAGIARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 LVNG VN+ SY+ + D+I+V+ KS + + A + ER VP ++ V N+ Sbjct: 118 FLVNGVKVNVPSYQVTKWDIIDVRPKSMGMLPFVAAKEAFGERPVPAWLQVVPSNLRVLV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VE YS+ Sbjct: 178 HQLPERAQIDVP----VQEQLIVELYSK 201 >gi|238064635|ref|ZP_04609344.1| RNA-binding S4 domain-containing protein [Micromonospora sp. ATCC 39149] gi|237886446|gb|EEP75274.1| RNA-binding S4 domain-containing protein [Micromonospora sp. ATCC 39149] Length = 202 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 110/202 (54%), Gaps = 9/202 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K RR+G L + + R + PG HG R ++K S + ++L KQ++K Y D+ E Sbjct: 7 KAKRSRRLGIALTPKCVRYLERRPFPPGDHG-RARTKDSDYKVRLLEKQRLKAQY-DLRE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R F A R G T L+ LE+RLD +V RA F TI+ ARQ V HRH+ VNGR Sbjct: 65 GQLRRAFDRAVRRPGKTGEELVVDLETRLDALVLRAGFARTIYQARQLVTHRHLTVNGRR 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA---ERDVPEYISVNHDNMVATFVRIPS 184 V+ S R + GD I V ++S+ A L A+ A +R P Y+ V+ +VA R P Sbjct: 125 VDRPSARLRPGDEIAVAERSRGRAPFLLAAGGAHAPQRPAP-YLDVDLAGLVARLTRPP- 182 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + V PVI LVVE YSR Sbjct: 183 --RRVEVPVICDEQLVVEHYSR 202 >gi|251772517|gb|EES53083.1| ribosomal protein S4 [Leptospirillum ferrodiazotrophum] Length = 209 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 15/189 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ R+Y PG HGQ R +K S +GLQLR KQK+K+ YG I E++FR FK A R +G+ Sbjct: 30 KCAIDRRAYPPGEHGQSR-AKASEYGLQLREKQKVKRIYG-ILERQFRKTFKVASRKKGN 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T +L+S LE RLD++VY + + +R V H HVLVNG+ VNI S+ C+ D I + Sbjct: 88 TGQSLLSALEMRLDSVVYHIGWGASRNESRMLVTHGHVLVNGKKVNIPSFSCRVNDTITL 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVP----YPVIMQP 197 +Q V + AE V ++ V+ ++ A +KD+P + + Sbjct: 148 SSSMQQNEKVSANFRDAEIRGVVSPWLEVDKNSFKAI-------VKDIPQRDAINIHIAE 200 Query: 198 NLVVEFYSR 206 NLVVE YSR Sbjct: 201 NLVVELYSR 209 >gi|18311341|ref|NP_563275.1| 30S ribosomal protein S4 [Clostridium perfringens str. 13] gi|168205188|ref|ZP_02631193.1| ribosomal protein S4 [Clostridium perfringens E str. JGS1987] gi|168213270|ref|ZP_02638895.1| ribosomal protein S4 [Clostridium perfringens CPE str. F4969] gi|168216676|ref|ZP_02642301.1| ribosomal protein S4 [Clostridium perfringens NCTC 8239] gi|169347143|ref|ZP_02866085.1| ribosomal protein S4 [Clostridium perfringens C str. JGS1495] gi|182625776|ref|ZP_02953543.1| ribosomal protein S4 [Clostridium perfringens D str. JGS1721] gi|26399586|sp|Q8XHW7|RS4B_CLOPE RecName: Full=Putative 30S ribosomal protein S4 B gi|18146025|dbj|BAB82065.1| 30S ribosomal protein S4 [Clostridium perfringens str. 13] gi|169296826|gb|EDS78955.1| ribosomal protein S4 [Clostridium perfringens C str. JGS1495] gi|170663264|gb|EDT15947.1| ribosomal protein S4 [Clostridium perfringens E str. JGS1987] gi|170715196|gb|EDT27378.1| ribosomal protein S4 [Clostridium perfringens CPE str. F4969] gi|177908932|gb|EDT71419.1| ribosomal protein S4 [Clostridium perfringens D str. JGS1721] gi|182381217|gb|EDT78696.1| ribosomal protein S4 [Clostridium perfringens NCTC 8239] Length = 197 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N+ G PK+ + G G R K S +G+QL KQ+++ Sbjct: 1 MAKMMGPRFKMCRRLGLNVVGHPKA---MKRAGRGT--SRADKKLSDYGIQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + E++F +A S+ L+ LESRLD +VYR F +I ARQ VNH H Sbjct: 56 YYG-VMERQFTRYVDQAFNSKEQPGEALLMILESRLDNMVYRMGFASSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG+ VNI S+R GD + +++KS++ + + + Y+S DN F Sbjct: 115 FLVNGKKVNIPSFRLNIGDEVVLREKSRKTEMFVNNFKDSIGSEVPYVSKEEDNFKGIFT 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P K P+ +Q L+VEFYS+ Sbjct: 175 RKP---KREEIPITIQEQLIVEFYSK 197 >gi|290968692|ref|ZP_06560230.1| ribosomal protein S4 [Megasphaera genomosp. type_1 str. 28L] gi|290781345|gb|EFD93935.1| ribosomal protein S4 [Megasphaera genomosp. type_1 str. 28L] Length = 195 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ K RR G N++G PK+ + ++R+ K S +G QL KQK++ Sbjct: 1 MATRREARFKQCRRFGLNVYGHPKALKRVKK-------EQRQKKMSEYGTQLLEKQKLRA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ++ E++F + +A + G T N++ LE RLD IVYR F +I ARQ VNH H Sbjct: 54 YY-NLLERQFVRYYDKAKKMDGVTGENMLKLLECRLDNIVYRIGFANSIRQARQMVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNG+ +I S K G V+ +K+ S+ ++ Q L DVP YI N D T Sbjct: 113 ILVNGKRCDIPSAHVKVGSVLTLKEASRDNEMYKKSFQELKTFDVP-YIEKNFDGFEGTL 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +D PV + L+VE YS+ Sbjct: 172 TRMPE--RD-EIPVEINETLIVELYSK 195 >gi|227505245|ref|ZP_03935294.1| ribosomal protein S4 [Corynebacterium striatum ATCC 6940] gi|227198144|gb|EEI78192.1| ribosomal protein S4 [Corynebacterium striatum ATCC 6940] Length = 201 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 119/208 (57%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR+ +L G + R Y PG G R + K S + LQL+ KQK K Sbjct: 1 MARYTGPATRVSRRLRVDLVGGDMA-FERRPYPPGQAG-RNRIKESEYLLQLQEKQKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLERQFRRYYAEANRRPGKTGDNLVVLLESRLDNVVYRAGLANTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 VNG+ +N+ S++ + D+I+V+++S+++ +A +L + +VP ++ V D + Sbjct: 118 FTVNGKKINVPSFQVSQYDIIDVRERSQKMEWFEDAQDRLVDANVPAWLQVVPDTLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VE YS+ Sbjct: 178 HQLPERAQIDVP----LQEQLIVELYSK 201 >gi|11466639|ref|NP_066322.1| ribosomal protein S4 [Malawimonas jakobiformis] gi|10178677|gb|AAG13689.1|AF295546_15 ribosomal protein S4 [Malawimonas jakobiformis] Length = 225 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 120/216 (55%), Gaps = 24/216 (11%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQK-- 57 M+KR K++I ++IGE+LWG+ +N + G HG+ ++K K F + K+K Sbjct: 1 MTKRFKQKYRICKQIGEDLWGKLNKKINY-NVRSGQHGKIKKKRKEIAFIYKDNNKKKIN 59 Query: 58 ----------MKKYYGDISEKKFRSIFKEADRSRGDTSHN-----LISFLESRLDTIVYR 102 ++K+Y +IS+K+F ++FK+ + + +N LI+ LE RLDTI++R Sbjct: 60 TVNKTQFIYKLRKFYSNISKKQFDNLFKKGNLLNANNKYNTNSKYLINLLERRLDTILFR 119 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 + + F ARQ +NH H+L+NG VN+ S+ GD IEVK+ S++L ++ + Sbjct: 120 INWASSFFNARQLINHGHILINGNIVNVSSHLVNIGDKIEVKKDSQKLLKKNLIDRIKNK 179 Query: 163 DV----PEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 + P YI VN++ + A + P+ VP+P I Sbjct: 180 QITINCPSYIEVNYNILCAIVIFNPTE-SFVPFPTI 214 >gi|182418834|ref|ZP_02950099.1| ribosomal protein S4 [Clostridium butyricum 5521] gi|237666637|ref|ZP_04526622.1| ribosomal protein S4 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377331|gb|EDT74892.1| ribosomal protein S4 [Clostridium butyricum 5521] gi|237657836|gb|EEP55391.1| ribosomal protein S4 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 206 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 18/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG +K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCFTDKCAFVRRSYAPGQHGANKK-KISGYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ +++A+ +G + NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLESQFRAYYEKAEHMKGISGENLLKLLEMRLDNVVYRLGYGASRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 V H H LVNG+ V+I SY DVI V +KS+ + + AE + +P ++ N Sbjct: 119 LVTHGHFLVNGKKVDICSYSVSANDVITVCEKSR---ASEKFKTFAENPKTLPAWLEANV 175 Query: 173 DNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 DN V +PS + DVP + L+VE YS+ Sbjct: 176 DNFEGKVVAVPSREEIDVP----VNETLIVELYSK 206 >gi|94987423|ref|YP_595356.1| 30S ribosomal protein S4 [Lawsonia intracellularis PHE/MN1-00] gi|152060957|sp|Q1MPP2|RS4_LAWIP RecName: Full=30S ribosomal protein S4 gi|94731672|emb|CAJ55035.1| ribosomal protein S4 [Lawsonia intracellularis PHE/MN1-00] Length = 208 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDAKCRLCRREGTKLFLKGDRCFTDKCAYDRRPYAPGQHGRVRK-KMSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR F AD ++G T NL+S+LE RLD +VYR + ARQ Sbjct: 60 KQKVRRVYG-VLEKQFREYFVHADMAKGITGVNLLSYLERRLDNVVYRLGLANSRVQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHD 173 + H +NG V I S + GD IEV +K+++++ V +A S + R P ++ ++ Sbjct: 119 LIRHGIFTLNGHKVTIPSLQVNVGDSIEVPEKNRKISVVADAQSIVGRRGCPSWLELDAS 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +D+ +P+ +L+VE YS+ Sbjct: 179 TFKGVVKALPQR-EDIQFPI--NEHLIVELYSK 208 >gi|90101684|sp|Q3S664|RS4_CORAM RecName: Full=30S ribosomal protein S4 gi|73913590|gb|AAZ91711.1| 30S Ribosomal protein S4 [Corynebacterium stationis] Length = 201 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR+ +L G + R Y PG G R + K S + LQL+ KQK K Sbjct: 1 MARYTGPATRVSRRLRVDLVGGDMA-FERRPYPPGQAG-RNRIKESEYLLQLQEKQKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLERQFRRYYVEANRQPGKTGDNLVVLLETRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 VNG+ N+ SYR + D+I+++++S+++ EA +L E VP ++ V +++ Sbjct: 118 FTVNGKKTNVPSYRVSQYDIIDIRERSRKMEWFEEAQDRLGEAVVPAWLQVVPESLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VE YS+ Sbjct: 178 HQLPERAQIDVP----LQEQLIVELYSK 201 >gi|24213464|ref|NP_710945.1| 30S ribosomal protein S4 [Leptospira interrogans serovar Lai str. 56601] gi|45658677|ref|YP_002763.1| 30S ribosomal protein S4 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|26454650|sp|Q9XD10|RS4_LEPIN RecName: Full=30S ribosomal protein S4 gi|61215619|sp|Q72NI7|RS4_LEPIC RecName: Full=30S ribosomal protein S4 gi|24194236|gb|AAN47963.1| 30S ribosomal protein S4 [Leptospira interrogans serovar Lai str. 56601] gi|45601921|gb|AAS71400.1| 30S ribosomal protein S4 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 207 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 9/202 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 KI RR G +L+ + N + GP +RK K S +G QLR KQK+K+ YG + Sbjct: 10 KIMRREGVDLFLKSSYTFNKDKFHRKGPPGMPTKRKGKVSEYGAQLREKQKLKRAYG-LL 68 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR ++EA + G T L+ LE RLD +VYR F T AR F+ HRH+LVNG Sbjct: 69 EKQFRRYYEEASHAHGVTGEILLQLLERRLDNVVYRLGFAITRRQARNFIAHRHILVNGE 128 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPS 184 V+I SYR GD +E+++K K + + + +L++ + +P ++S ++ N +P Sbjct: 129 RVDIPSYRLNVGDKVEIREKFKTSSFIADNIKLSQSLQGIPSWLSADYTNFGGDVTALPE 188 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + PV Q ++VE YS+ Sbjct: 189 R-HHIDLPVKEQ--VIVELYSK 207 >gi|315925228|ref|ZP_07921442.1| 30S ribosomal protein S4 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621462|gb|EFV01429.1| 30S ribosomal protein S4 [Pseudoramibacter alactolyticus ATCC 23263] Length = 209 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 6/192 (3%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 GE + + K R PG +R++K S +GLQLR KQK+K+ YG + EK+FR F Sbjct: 23 GERCYAKDKCAFGKRPTPPG-GAPKRRAKLSEYGLQLREKQKVKRIYG-VLEKQFRHYFD 80 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A++ +G T NL++ LE+RLD VYR + ARQ V H H LVNG VN+ SY+ Sbjct: 81 VAEKQQGITGENLLALLETRLDNAVYRMGMGQSRKEARQLVLHGHFLVNGAKVNVASYQL 140 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K GDVI V KSK+ A E + E R + ++ + + + + PS +D+ + Sbjct: 141 KAGDVISVADKSKKSAKFKEVVESTENRAIVPWLEADLEKLSGKVIGKPSR-EDI--DIE 197 Query: 195 MQPNLVVEFYSR 206 + +L+VE YS+ Sbjct: 198 IAEHLIVELYSK 209 >gi|119029437|gb|ABL59934.1| ribosomal protein S4 [uncultured bacterium] Length = 210 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/178 (42%), Positives = 102/178 (57%), Gaps = 10/178 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG HG RR SK S +G Q RAKQ K+ YG + E++FR+ F+ A + G T NL+ LE Sbjct: 38 PGQHGTRR-SKLSDYGKQFRAKQLAKRIYG-VLERQFRNYFRYASKRNGPTGENLLRLLE 95 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG----RSVNIGSYRCKEGDVIEVKQKSKQ 149 RLD IVYR+ F T ARQ V+H+ ++VN R VNI SY+ K D I V++K + Sbjct: 96 CRLDNIVYRSGFARTRKEARQLVSHKGIVVNDGKNIRVVNIPSYQIKPEDEIFVREKCRD 155 Query: 150 LASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V EA LA+ R PE+I +H N R+P + P+ + L+VE YS+ Sbjct: 156 QGRVREALDLAQKRTTPEWIETDHLNFKGVIKRLPERDE---MPLEIAELLIVELYSK 210 >gi|187935054|ref|YP_001884501.1| 30S ribosomal protein S4 [Clostridium botulinum B str. Eklund 17B] gi|188590506|ref|YP_001919700.1| 30S ribosomal protein S4 [Clostridium botulinum E3 str. Alaska E43] gi|251777686|ref|ZP_04820606.1| 30S ribosomal protein S4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226697826|sp|B2UYD8|RS4_CLOBA RecName: Full=30S ribosomal protein S4 gi|226697827|sp|B2TIK3|RS4_CLOBB RecName: Full=30S ribosomal protein S4 gi|187723207|gb|ACD24428.1| 30S ribosomal protein S4 [Clostridium botulinum B str. Eklund 17B] gi|188500787|gb|ACD53923.1| 30S ribosomal protein S4 [Clostridium botulinum E3 str. Alaska E43] gi|243082001|gb|EES47891.1| 30S ribosomal protein S4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 206 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 18/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG +K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCFTDKCAFVRRSYAPGQHGASKK-KMSNYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ +++A+ +G T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKARRIYG-ILEGQFRTYYEKAEHMKGITGENLLKLLEMRLDNVVYRLGYGASRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H LVNG+ V+I SY DVI V +KS+ + + +E + +P+++ N Sbjct: 119 LVTHGHFLVNGKKVDICSYHVSMNDVITVCEKSRSSEKFKTFVENP----KTLPKWLEAN 174 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 DN V PS +D+ PV L+VE YS+ Sbjct: 175 VDNYEGKVVAEPSR-EDIDVPV--NETLIVELYSK 206 >gi|160941043|ref|ZP_02088381.1| hypothetical protein CLOBOL_05936 [Clostridium bolteae ATCC BAA-613] gi|158435992|gb|EDP13759.1| hypothetical protein CLOBOL_05936 [Clostridium bolteae ATCC BAA-613] Length = 197 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +G+QLR KQK K YG + EK FR+ + +A + G NL+ LE RLD Sbjct: 33 KRTNKKLSEYGMQLREKQKAKFIYG-VLEKPFRNYYAKASKMNGMVGTNLMILLECRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R T ARQ V+H+H+LVNG+ VNI SYR K GDVIEVK+K +++ VLE Sbjct: 92 VLFRMGLGRTRKEARQIVDHKHILVNGKPVNIPSYRVKAGDVIEVKEKYKSAQRYKDVLE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + R VP ++ V+ +N+ T +P+ + DVP + L+VE YS+ Sbjct: 152 VT--GGRMVPAWLDVDQENLRGTVKEMPTRDEIDVP----VNEMLIVELYSK 197 >gi|320352938|ref|YP_004194277.1| 30S ribosomal protein S4P [Desulfobulbus propionicus DSM 2032] gi|320121440|gb|ADW16986.1| SSU ribosomal protein S4P [Desulfobulbus propionicus DSM 2032] Length = 209 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 9/186 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K RS+ PG HGQ R K S + +QLR KQK+K+ YG + E +FR F+ A+R++G Sbjct: 30 KCAFERRSFAPGQHGQNRFRKVSDYAVQLREKQKVKQMYG-MLEAQFRRYFERAERAKGV 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD ++YR+ F + ARQ V H +NG+ VNI S++ GD+I + Sbjct: 89 TGETLLIMLERRLDNVLYRSGFASSRDQARQMVRHNLFTLNGKKVNIPSHQVNAGDIIAL 148 Query: 144 K---QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 K QKS+Q+ LE + R +P ++ ++ +P+ +++ P+ Q L+ Sbjct: 149 KEKYQKSEQVIDNLEGA--VRRGLPSWLELDQAKFHCAVKALPNR-EEITMPI--QEQLI 203 Query: 201 VEFYSR 206 VE YS+ Sbjct: 204 VELYSK 209 >gi|15639298|ref|NP_218747.1| 30S ribosomal protein S4 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025540|ref|YP_001933312.1| 30S ribosomal protein S4 [Treponema pallidum subsp. pallidum SS14] gi|6094183|sp|O83328|RS4_TREPA RecName: Full=30S ribosomal protein S4 gi|226695095|sp|B2S2Q4|RS4_TREPS RecName: Full=30S ribosomal protein S4 gi|3322583|gb|AAC65295.1| ribosomal protein S4 [Treponema pallidum subsp. pallidum str. Nichols] gi|189018115|gb|ACD70733.1| ribosomal protein S4 [Treponema pallidum subsp. pallidum SS14] Length = 204 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 118/206 (57%), Gaps = 13/206 (6%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYG-----PGL-HGQRRKSKPSYFGLQLRAKQKMKK 60 ++ KI RR+G N++G PK TR G PG HG ++++K S +G QL+ KQK + Sbjct: 6 ARGKIVRRLGINIFGNPKY---TRLLGKKPAPPGKEHGVKQRAKVSVYGEQLKEKQKFRF 62 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++FR++F +A R +G T +N++S +E RLD V+R F + ARQ V+HR+ Sbjct: 63 AYG-MSERQFRNLFAQAHRMKGVTGNNMLSLMERRLDNTVFRMGFAISRVQARQMVSHRY 121 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 L+NG++ NI S R DVI K + + + L++ +++V+ + + AT Sbjct: 122 FLINGKTANIPSMRISAHDVITTKNRKGIHSIIRHNLTLSQGQRGSWLNVDEEQLSATVS 181 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + P I +VE+YSR Sbjct: 182 ELPRAQDIHPVGNIQH---IVEYYSR 204 >gi|323703521|ref|ZP_08115167.1| ribosomal protein S4 [Desulfotomaculum nigrificans DSM 574] gi|323531512|gb|EGB21405.1| ribosomal protein S4 [Desulfotomaculum nigrificans DSM 574] Length = 208 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 110/185 (59%), Gaps = 8/185 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K V+ RSY PG HGQ RK K S +G+QLR KQK ++ YG + EK FR+ F+ A+R G Sbjct: 30 KCAVDRRSYAPGQHGQGRK-KISEYGIQLREKQKARRIYG-VLEKPFRNYFERAERQPGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD ++YR + ARQ V H H VNGR VNI SY+ + GD I V Sbjct: 88 TGENLLRLLERRLDNVIYRLGLGASRVEARQLVRHGHFTVNGRKVNIPSYQVRVGDEIAV 147 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 ++KSK+ + E + AER ++ + + A V +P+ + DVP +Q +L+V Sbjct: 148 REKSKESPRIKELMERAAERTPVAWLEYDANEAKARVVALPTRDQIDVP----VQDHLIV 203 Query: 202 EFYSR 206 E YSR Sbjct: 204 ELYSR 208 >gi|284033972|ref|YP_003383903.1| 30S ribosomal protein S4 [Kribbella flavida DSM 17836] gi|283813265|gb|ADB35104.1| ribosomal protein S4 [Kribbella flavida DSM 17836] Length = 202 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G K+ R Y PG+HG+ R + Y LQLR KQK + Sbjct: 1 MARYTGPMTKKSRRLGVDLVGGDKA-FERRPYPPGMHGRGRPKESEYL-LQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F +KEA R G T NL+ LESRLD +VYRA T ARQ V H H Sbjct: 59 AYG-VLEKQFSLYYKEASRRPGKTGDNLLIILESRLDNVVYRAGLARTRRQARQLVVHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 VNG VNI SYR DVI+V+ KS ++ + A + +ER VP ++ + + Sbjct: 118 FTVNGIKVNIPSYRVAAHDVIDVRPKSAEMTPFIIARETHSERVVPAWLEALPERLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + + +L+VE YS+ Sbjct: 178 HQLPTRAQ---IDTQVAEHLIVELYSK 201 >gi|17230229|ref|NP_486777.1| 30S ribosomal protein S4 [Nostoc sp. PCC 7120] gi|26399434|sp|Q8YTI0|RS4_ANASP RecName: Full=30S ribosomal protein S4 gi|17131830|dbj|BAB74436.1| 30S ribosomal protein S4 [Nostoc sp. PCC 7120] Length = 202 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGD-LPGLTRKSAR-RAYPPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR VNI SY+C+ G+ I V+ K+ K + + L+ LA ++P ++ + + +V Sbjct: 117 VTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLA--NLPSHLEFDKNKLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +S+ + + V +Q N LVVE+YSR Sbjct: 175 KV----NSVIEREW-VALQVNELLVVEYYSR 200 >gi|257457760|ref|ZP_05622921.1| ribosomal protein S4 [Treponema vincentii ATCC 35580] gi|257444810|gb|EEV19892.1| ribosomal protein S4 [Treponema vincentii ATCC 35580] Length = 204 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 16/213 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLH-GQRRKSKPSYFGLQLRAKQK 57 M+ R+ K K+ RR G N++G PK ++ + PG G +++ K S +G QL+ KQK Sbjct: 1 MATRQP-KGKLVRRFGSNIFGNPKYSKLLDRKPNAPGKERGAKQRGKLSVYGEQLKEKQK 59 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + YG +SE++F ++F++A + G T N++S +E RLD +YR F + ARQ V+ Sbjct: 60 FRFAYG-MSERQFSNLFQKALKMSGVTGDNMLSLMEQRLDNTIYRMGFAVSRAQARQMVS 118 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H + L+NG+ NI S R K GDVI K K + + ++SVN +N+ A Sbjct: 119 HAYFLLNGKPANIPSMRVKVGDVITTKDKKGFQNLIRHNLSTVQGGKGSWLSVNDENLSA 178 Query: 178 TFVRIPSSLKDVPYPVIMQP----NLVVEFYSR 206 T +P+ P +QP VVEFYSR Sbjct: 179 TVTTLPT-------PADIQPVGNIQYVVEFYSR 204 >gi|168211877|ref|ZP_02637502.1| ribosomal protein S4 [Clostridium perfringens B str. ATCC 3626] gi|170710184|gb|EDT22366.1| ribosomal protein S4 [Clostridium perfringens B str. ATCC 3626] Length = 206 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNH 172 VNH H LVNG+ V+I S++ D I V +KS+ AE + +P+++ N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDFITVCEKSRGSERF---KMFAENPKALPKWLEANV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N V P+ +D+ PV L+VE YS+ Sbjct: 176 ENFEGKVVAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|153854997|ref|ZP_01996210.1| hypothetical protein DORLON_02216 [Dorea longicatena DSM 13814] gi|149752494|gb|EDM62425.1| hypothetical protein DORLON_02216 [Dorea longicatena DSM 13814] Length = 197 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK F + FK+A + G T NL+ LESRLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFLNYFKKASKMNGMTGENLMVLLESRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R T ARQ V+H+HVLVNG+ +NI SY K GDV+E+K+ K E + Sbjct: 92 VVFRLGLARTRREARQIVDHKHVLVNGKQINIPSYLVKAGDVVEIKEAKKSSPRYKEIVE 151 Query: 159 L-AERDVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 + R VPE++ + +N+ T +P DVP + L+VE YS+ Sbjct: 152 VTGGRLVPEWLEADLENLKGTVKELPKREAIDVP----VDEMLIVELYSK 197 >gi|68536849|ref|YP_251554.1| 30S ribosomal protein S4 [Corynebacterium jeikeium K411] gi|260579207|ref|ZP_05847097.1| 30S ribosomal protein S4 [Corynebacterium jeikeium ATCC 43734] gi|90101685|sp|Q4JTC1|RS4_CORJK RecName: Full=30S ribosomal protein S4 gi|68264448|emb|CAI37936.1| 30S ribosomal protein S4 [Corynebacterium jeikeium K411] gi|258602693|gb|EEW15980.1| 30S ribosomal protein S4 [Corynebacterium jeikeium ATCC 43734] Length = 201 Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 15/205 (7%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R+S + ++D G+N + R R Y PG G R + K S + LQL+ KQK K YG Sbjct: 10 RKSRRLRVDLVGGDNSFER-------RPYPPGQAG-RARIKESEYLLQLQEKQKAKYTYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H V Sbjct: 62 -VLEKQFRRYYAEANRRPGKTGDNLVILLESRLDNVVYRAGLARTRRQARQLVSHGHFTV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRI 182 NG+ VN+ S++ + D+I+V++KS+ + EA + L + VP ++ V + ++ Sbjct: 121 NGKKVNVPSFKVSQYDIIDVREKSRSMLWFEEAQEALVDTIVPAWLQVVPSTLRILVHQL 180 Query: 183 PSSLK-DVPYPVIMQPNLVVEFYSR 206 P + D+P +Q L+VE YS+ Sbjct: 181 PERAQIDIP----LQEQLIVELYSK 201 >gi|146329810|ref|YP_001210128.1| 30S ribosomal protein S4 [Dichelobacter nodosus VCS1703A] gi|172047329|sp|A5EX95|RS4_DICNV RecName: Full=30S ribosomal protein S4 gi|146233280|gb|ABQ14258.1| 30S ribosomal protein S4 [Dichelobacter nodosus VCS1703A] Length = 206 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENL----WGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K ++ RR G +L RP + PG HG RR + S +G QLR KQ Sbjct: 1 MARYIGPKCRLARREGVDLELKSGVRPSESKCNMNAAPGQHGGRR-GRLSDYGGQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + E++FR+ +K+A + +G T NL+ LE RLD +VYR + T ARQ V Sbjct: 60 KLKRTYG-VLERQFRNYYKKAVQQKGSTGENLLILLEQRLDNVVYRMGYGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H + VNG+ V I SY+ + D++ V+++S++ + A ++A +R ++I V+ M Sbjct: 119 SHGAIEVNGQRVTIASYQVQAEDIVSVREQSRKQIRIQSALEIAKQRGFVDWIEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + + + +LVVE YS+ Sbjct: 179 SGQFKRVP---ERIDLSADINESLVVELYSK 206 >gi|298492220|ref|YP_003722397.1| 30S ribosomal protein S4 ['Nostoc azollae' 0708] gi|298234138|gb|ADI65274.1| ribosomal protein S4 ['Nostoc azollae' 0708] Length = 202 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGE-LPGLTRKSAR-RAYAPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI ARQ VNH H Sbjct: 58 NYG-LTEKQMLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRMGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR VNI SY+C+ G+ I V+ + SK+L S L+ LA ++P ++ + + + Sbjct: 117 VTVNGRVVNIASYQCRPGEEIAVRDNEASKKLVESNLQYPGLA--NLPNHLEFDKNKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ S ++ + + LVVE+YSR Sbjct: 175 ---KVNSVIEREWVALQVNELLVVEYYSR 200 >gi|317054794|ref|YP_004103261.1| 30S ribosomal protein S4 [Ruminococcus albus 7] gi|315447063|gb|ADU20627.1| ribosomal protein S4 [Ruminococcus albus 7] Length = 198 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 104/169 (61%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 ++ K S +GLQL+ KQK++ YG + EK+F F+ A + G NL++ LESRLD++V Sbjct: 36 KRKKVSEYGLQLKEKQKLRFIYG-VLEKQFHHYFEIAQKMEGQAGTNLLTILESRLDSVV 94 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEAS 157 +R T ARQ V H H LVNG+ V+I SYR K GDVI +K+ SK + ++E + Sbjct: 95 FRMGLSMTRREARQLVVHGHFLVNGKRVDIPSYRIKAGDVISLKENSKKSPKFKQIIETT 154 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A R VP ++ ++ +N A VR+P +D+ Y + + +L+VE YS+ Sbjct: 155 --AGRVVPTWLDMDKENQTAKVVRMPVK-EDLDYEI--EEHLIVELYSK 198 >gi|171920763|ref|ZP_02695909.2| ribosomal protein S4 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179021|ref|ZP_02555262.2| ribosomal protein S4 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024074|ref|ZP_02569813.2| ribosomal protein S4 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518325|ref|ZP_02556234.2| ribosomal protein S4 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524320|ref|ZP_02557924.2| ribosomal protein S4 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867952|ref|ZP_03079949.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273253|ref|ZP_03205789.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554088|ref|YP_002284942.1| 30S ribosomal protein S4 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551036|ref|ZP_03771982.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226695097|sp|B5ZC02|RS4_UREU1 RecName: Full=30S ribosomal protein S4 gi|171903514|gb|EDT49803.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209112|gb|EDU06155.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019116|gb|EDU57156.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998272|gb|EDU67369.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660051|gb|EDX53431.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660348|gb|EDX53608.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249773|gb|EDY74553.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541589|gb|ACI59818.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378851|gb|EEH01216.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 202 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ S +K RR+G +L K + R+YGPG HG + K K S +G QL KQK+ Sbjct: 1 MSRYTGSIYKKSRRLGFSLLENNKEFNSGKKRTYGPGQHGNK-KVKLSNYGQQLVEKQKL 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +++++FR +++ A G + NL+ LESRLD++VYRA F PT AARQ VNH Sbjct: 60 MFLYG-LNDRQFRRLYRVALGRPGVLTLNLLQVLESRLDSLVYRAGFAPTRRAARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 HVLVNG+ VNI S + G I +K+KS ++ +++ + D E V+ D VA Sbjct: 119 SHVLVNGKKVNIPSALVEVGSTIALKEKSLEMP-LIKNTLNKPADFIEL--VDKDKKVAK 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + VVE+Y+R Sbjct: 176 LSRLPERSE---LPADVNEAYVVEWYNR 200 >gi|291059705|gb|ADD72440.1| ribosomal protein S4 [Treponema pallidum subsp. pallidum str. Chicago] Length = 260 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 118/206 (57%), Gaps = 13/206 (6%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYG-----PGL-HGQRRKSKPSYFGLQLRAKQKMKK 60 ++ KI RR+G N++G PK TR G PG HG ++++K S +G QL+ KQK + Sbjct: 62 ARGKIVRRLGINIFGNPKY---TRLLGKKPAPPGKEHGVKQRAKVSVYGEQLKEKQKFRF 118 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++FR++F +A R +G T +N++S +E RLD V+R F + ARQ V+HR+ Sbjct: 119 AYG-MSERQFRNLFAQAHRMKGVTGNNMLSLMERRLDNTVFRMGFAISRVQARQMVSHRY 177 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 L+NG++ NI S R DVI K + + + L++ +++V+ + + AT Sbjct: 178 FLINGKTANIPSMRISAHDVITTKNRKGIHSIIRHNLTLSQGQRGSWLNVDEEQLSATVS 237 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + P I +VE+YSR Sbjct: 238 ELPRAQDIHPVGNIQH---IVEYYSR 260 >gi|111115445|ref|YP_710063.1| 30S ribosomal protein S4 [Borrelia afzelii PKo] gi|122956337|sp|Q0SMP1|RS4_BORAP RecName: Full=30S ribosomal protein S4 gi|110890719|gb|ABH01887.1| ribosomal protein S4 [Borrelia afzelii PKo] Length = 208 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++++ +K K+ RR G N++ +PK + + + PG+HG+ RK+K + +G QL KQK+ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKKPHPPGMHGKARKAKITEYGKQLIEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG +SE++ + FKEA + G T +NL+S LE+ +D IVYRA F + AR V+H Sbjct: 61 KFTYG-VSERQLPNTFKEAKKHHGVTGYNLLSILETIIDNIVYRAGFAFSRAHARLIVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVI---EVKQKSKQLASVLEASQLAERDVPEYISVNHDNM 175 V++NGR V I S + D I E+ K + S +E + A+R++P I +N D + Sbjct: 120 GIVILNGRRVTIPSIILRANDQILIQEIDSLKKLIGSNIEQTS-AQRNLPTGIELNADYL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 179 NIKVKHAPS--RD-EIPTLANEQMVVEYYSK 206 >gi|259506742|ref|ZP_05749642.1| 30S ribosomal protein S4 [Corynebacterium efficiens YS-314] gi|259165683|gb|EEW50237.1| 30S ribosomal protein S4 [Corynebacterium efficiens YS-314] Length = 178 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR + EA+R G T NL+ Sbjct: 6 RPYPPGQAG-RARIKESEYLLQLQEKQKARFIYG-VMEKQFRRYYAEANRRPGKTGENLV 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H +VNG++V++ S+R + D+I+V++KS++ Sbjct: 64 VMLESRLDNVVYRAGLARTRRQARQLVSHGHFVVNGKAVDVPSFRVSQYDIIDVREKSQK 123 Query: 150 LASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA L + VP ++ V + ++P + D+P +Q L+VEFYS+ Sbjct: 124 MNWFEEAQDNLVDAIVPAWLQVVPSTLRILVHQLPERAQIDIP----LQEQLIVEFYSK 178 >gi|300782638|ref|YP_003762929.1| 30S ribosomal protein S4 [Amycolatopsis mediterranei U32] gi|299792152|gb|ADJ42527.1| small subunit ribosomal protein S4 [Amycolatopsis mediterranei U32] Length = 201 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I RR+ +L G ++ R Y PG HG R + K S + LQ + KQK + Sbjct: 1 MARYTGPATRISRRLKVDLIGGDQA-FERRPYPPGQHG-RGRIKESEYLLQSQEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F +KEA R G T NL+ LESRLD ++YRA T ARQ V+H H Sbjct: 59 TYG-VLERQFVRYYKEAVRRPGKTGENLLQILESRLDNVIYRAGIARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNMVATF 179 LVNG VN+ SY+ + D+I+V+ KS L V+ +R +P ++ V N+ Sbjct: 118 FLVNGVKVNVPSYQVTKWDIIDVRPKSFSMLPFVVAKESFGDRPIPAWLQVVQSNLRVLV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VE YS+ Sbjct: 178 HQLPERAQIDVP----VQEQLIVELYSK 201 >gi|302543334|ref|ZP_07295676.1| ribosomal protein S4 [Streptomyces hygroscopicus ATCC 53653] gi|302460952|gb|EFL24045.1| ribosomal protein S4 [Streptomyces himastatinicus ATCC 53653] Length = 208 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 104/192 (54%), Gaps = 22/192 (11%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ R Y PG HG R ++K S + LQLR KQK + YG + EK+FR + EA++ G Sbjct: 30 KCPIEIRPYPPGEHG-RGRTKDSEYLLQLREKQKATRIYG-VLEKQFRGYYAEANKKTGK 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE+RLD +VYRA F + ARQ V H H VNG +I S R D+IEV Sbjct: 88 TGENLLRILETRLDNVVYRAGFAKSRDHARQLVRHGHFTVNGVKTDIPSARVAVNDIIEV 147 Query: 144 KQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPV--------I 194 +QKS+ + + ++ +R VP ++ IPS L+ + + + Sbjct: 148 RQKSRTMTPFQVAVAEAGDRTVPAWLEA-----------IPSQLRILVHSMPERQVIDTQ 196 Query: 195 MQPNLVVEFYSR 206 +Q L+VE YS+ Sbjct: 197 VQEQLIVELYSK 208 >gi|25027127|ref|NP_737181.1| 30S ribosomal protein S4 [Corynebacterium efficiens YS-314] gi|41017843|sp|Q8FS34|RS4_COREF RecName: Full=30S ribosomal protein S4 gi|23492407|dbj|BAC17381.1| putative 30S ribosomal protein S4 [Corynebacterium efficiens YS-314] Length = 201 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 119/207 (57%), Gaps = 15/207 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 + R+S + ++D G+ + R R Y PG G R + K S + LQL+ KQK + Sbjct: 8 ATRKSRRLRVDLVGGDMAFER-------RPYPPGQAG-RARIKESEYLLQLQEKQKARFI 59 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG + EK+FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 60 YG-VMEKQFRRYYAEANRRPGKTGENLVVMLESRLDNVVYRAGLARTRRQARQLVSHGHF 118 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFV 180 +VNG++V++ S+R + D+I+V++KS+++ EA L + VP ++ V + Sbjct: 119 VVNGKAVDVPSFRVSQYDIIDVREKSQKMNWFEEAQDNLVDAIVPAWLQVVPSTLRILVH 178 Query: 181 RIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + D+P +Q L+VEFYS+ Sbjct: 179 QLPERAQIDIP----LQEQLIVEFYSK 201 >gi|331269808|ref|YP_004396300.1| 30S ribosomal protein S4 [Clostridium botulinum BKT015925] gi|329126358|gb|AEB76303.1| ribosomal protein S4 [Clostridium botulinum BKT015925] Length = 197 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/208 (37%), Positives = 119/208 (57%), Gaps = 13/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ S R K S +G+QL KQK++ Sbjct: 1 MAKIRQPRFKLSRRLGVNIYGHPKAMKRAESTRAN-----RNKKISDYGIQLLEKQKIRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F+ ++A +S+ T L+ LE RLD IVYR F +I ARQ VNH + Sbjct: 56 YYG-VMEKQFKRYVEKAMKSKEVTGEVLLKLLECRLDNIVYRIGFANSIRQARQMVNHGY 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNG+ V+I SY+ K GD++++K K + Q+ S +L ++P YI N+D+ Sbjct: 115 ILVNGKKVDIPSYQVKVGDIVKLKDKYTNNQMFSD-NFLELRTFELP-YIEKNYDDFSGK 172 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P +D P+ + VVE YS+ Sbjct: 173 LLRLPE--RD-ELPIEVNEVAVVELYSK 197 >gi|150015071|ref|YP_001307325.1| 30S ribosomal protein S4 [Clostridium beijerinckii NCIMB 8052] gi|189045374|sp|A6LPT9|RS4_CLOB8 RecName: Full=30S ribosomal protein S4 gi|149901536|gb|ABR32369.1| ribosomal protein S4 [Clostridium beijerinckii NCIMB 8052] Length = 206 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 117/215 (54%), Gaps = 18/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG +K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCFTDKCAFVRRSYAPGQHGANKK-KVSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ +++A+ +G T NL+ LE RLD IVYR + + ARQ Sbjct: 60 KQKARRIYG-ILEGQFRTYYEKAEHIKGITGENLLKLLEMRLDNIVYRLGYGSSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 V H H LVNG+ V+I SY DVI V +KS+ + + +E + +P+++ N Sbjct: 119 LVTHGHFLVNGKKVDICSYHVSVNDVITVCEKSRSSEKFKTFVENP----KTLPKWLEAN 174 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 DN V PS +D+ PV L+VE YS+ Sbjct: 175 VDNYEGKVVAEPSR-EDIDVPV--NETLIVELYSK 206 >gi|33239861|ref|NP_874803.1| 30S ribosomal protein S4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|41017828|sp|Q7VDG7|RS4_PROMA RecName: Full=30S ribosomal protein S4 gi|33237387|gb|AAP99455.1| Ribosomal protein S4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 202 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + RS PG HG R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGD-LPGLTRKAAK-RSNPPGQHGNARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAMEGSTGTNLLKLLEGRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNG++++I SY+CK GD I ++++ SK+LA LE LA +VP ++ + M A Sbjct: 117 VTVNGKTLDIASYQCKSGDTIAIRERKGSKKLAEGNLEFPGLA--NVPPHLELEKSKMTA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 ---KVTGKCDREWVAIEINELLVVEYYSR 200 >gi|291521873|emb|CBK80166.1| SSU ribosomal protein S4P [Coprococcus catus GD/7] Length = 197 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 109/184 (59%), Gaps = 14/184 (7%) Query: 27 VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSH 86 V+ +S + G R+KS+ +G QLR KQK K YG + EK FR+ F +A + +G T Sbjct: 24 VDKKSNRQSIRGNRKKSE---YGNQLREKQKAKFIYG-VLEKPFRNYFAKASQMKGQTGE 79 Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 NL+ LE RLD I++R F T ARQ V+H+HV VNG+ VNI SY+ K GDV+E+++K Sbjct: 80 NLMVMLECRLDNIIFRLGFARTRKEARQIVDHKHVSVNGKLVNIPSYQVKPGDVVEIREK 139 Query: 147 ---SKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVE 202 S++ +LE + R VPE++ + +N+ +P + DVP + L+VE Sbjct: 140 FKTSQRYKDILEMA--GGRMVPEWLEADQENLKGEVKALPLREQIDVP----VDEMLIVE 193 Query: 203 FYSR 206 YS+ Sbjct: 194 LYSK 197 >gi|172035133|ref|YP_001801634.1| 30S ribosomal protein S4 [Cyanothece sp. ATCC 51142] gi|254764582|sp|B1X067|RS4_CYAA5 RecName: Full=30S ribosomal protein S4 gi|171696587|gb|ACB49568.1| 30S ribosomal protein S4 [Cyanothece sp. ATCC 51142] Length = 202 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQGRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A RS T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V+VNGR VNI SY+C+ GDVI V+ K + + + ++ LA ++P+++ + + + Sbjct: 117 VIVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLA--NLPDHLEFDKNTLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +K + + LVVE+YSR Sbjct: 175 ---KVNDVIKREWVALQINELLVVEYYSR 200 >gi|310779569|ref|YP_003967902.1| SSU ribosomal protein S4P [Ilyobacter polytropus DSM 2926] gi|309748892|gb|ADO83554.1| SSU ribosomal protein S4P [Ilyobacter polytropus DSM 2926] Length = 195 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 15/177 (8%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 GP + R KP+ + +QLR KQK K Y + EK+FR ++ EA+R G T NLI +L Sbjct: 31 GPRPNANR---KPTEYAIQLREKQKAKFIYS-VMEKQFRKLYAEANRRDGVTGLNLIQYL 86 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--- 149 E RLD +VYR T ARQ V+H H+ VNGR VNI SYR K GDVI V + SK Sbjct: 87 ERRLDNVVYRLGIAKTRRQARQVVSHGHIAVNGRKVNIASYRVKVGDVISVIENSKNVEI 146 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + S +EAS + P ++ V+ + ++ P+ D+ + + L+VEFYSR Sbjct: 147 IKSAVEAS-----NAPSWLEVDKASFTGKVLQNPTK-DDLDFE--LNEALIVEFYSR 195 >gi|325479161|gb|EGC82258.1| ribosomal protein S4 [Anaerococcus prevotii ACS-065-V-Col13] Length = 197 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 RR++K S +G+Q R KQK K YG +SEK+FR ++ A + +G T LI E RLD + Sbjct: 34 RRRAKLSEYGMQQREKQKAKFIYG-VSEKQFRGYYEAASKMKGQTGEQLIILCERRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK--QLASVLEAS 157 +R+ T ARQ V H H+ VNG+ V+I SY+ +EGDVIEV++KS+ QL ++ + Sbjct: 93 AFRSGLARTRREARQIVTHGHLTVNGKQVDIPSYQIEEGDVIEVREKSRSSQLFKAIKET 152 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A V E+++ + +N+ T R P+ +D+ PV + ++VEFYS+ Sbjct: 153 N-ATFGVVEWLTSDIENLKVTVDRFPTR-EDIDIPV--EERMIVEFYSK 197 >gi|242624335|ref|YP_003002253.1| 30S ribosomal protein S4 [Aureoumbra lagunensis] gi|239997443|gb|ACS36965.1| 30S ribosomal protein S4 [Aureoumbra lagunensis] Length = 204 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 13/211 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR--KSKPSYFGLQLRAKQKM 58 MS+ K +I RR+GE L G + V TR PG H Q R ++ S + ++L+ KQK+ Sbjct: 1 MSRYRGPKIRIVRRLGE-LPGLT-TKVTTRETLPGQHRQSRLQRNNSSSYSIRLQEKQKL 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++EK+ + KEA R RG T L+ LE RLD IV+R TI A+RQ +NH Sbjct: 59 RYNYG-LTEKQLFAYVKEAKRLRGATGSVLMQLLEMRLDNIVFRLGLANTIPASRQIINH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLAS-VLEASQLAERDVPEYISVNHDNM 175 H+ VN R V+I S++C D+IEV KQ SKQ+ S LE + + + VP+Y+ D + Sbjct: 118 GHICVNDRKVDIPSFQCHPNDIIEVKNKQTSKQVVSKFLEKTDV--KPVPDYLEFERDKI 175 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+ S + + + LVVE+YSR Sbjct: 176 RGKVKRVIESREA---NIDINELLVVEYYSR 203 >gi|306835269|ref|ZP_07468301.1| 30S ribosomal protein S4 [Corynebacterium accolens ATCC 49726] gi|304568862|gb|EFM44395.1| 30S ribosomal protein S4 [Corynebacterium accolens ATCC 49726] Length = 178 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 106/179 (59%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK K YG + E++FR + EA+R G T NL+ Sbjct: 6 RPYPPGQAG-RNRIKESEYLLQLQEKQKAKYTYG-VLERQFRRYYTEANRLPGKTGDNLV 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE+RLD +VYRA T ARQ V+H H VNG+++NI SYR + D+I+V+ +S++ Sbjct: 64 ILLETRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKNINIPSYRVTQYDIIDVRPRSQK 123 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + +A L + +VP ++ V D + ++P + D+P +Q L+VE YS+ Sbjct: 124 MEWFEDAQDALIDANVPAWLQVVPDTLRILVHQLPERAQIDIP----LQEQLIVELYSK 178 >gi|160871805|ref|ZP_02061937.1| ribosomal protein S4 [Rickettsiella grylli] gi|159120604|gb|EDP45942.1| ribosomal protein S4 [Rickettsiella grylli] Length = 206 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR------SYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR+G +L + KS + + PG+ +R + S +G+ LR Sbjct: 1 MARYRGPTCKLARRLGTDL--QLKSGIRALDSKCKLATPPGMQPAKR-GRLSEYGVLLRQ 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ ++ YG I E++FR + +A + +G T NL+ LE RLD +VYR F T ARQ Sbjct: 58 KQLIRHTYG-ILERQFRLYYTKASKRKGITGENLLKLLECRLDNVVYRMGFASTRAEARQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+HR V VN VNI SY+ K GDVIE+K+KSK + A +L ++ P +I V+ Sbjct: 117 LVSHRAVKVNSTIVNIPSYQVKVGDVIEIKEKSKSQTRIQAAIELTKQKPQPAWIDVDST 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F IP + P+ NLVVE+YS+ Sbjct: 177 QLQGVFKLIPERSE---LPLEFNENLVVEYYSK 206 >gi|118443601|ref|YP_878412.1| 30S ribosomal protein S4 [Clostridium novyi NT] gi|152060919|sp|A0Q1B0|RS4B_CLONN RecName: Full=30S ribosomal protein S4 B gi|118134057|gb|ABK61101.1| ribosomal protein S4 [Clostridium novyi NT] Length = 196 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 14/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R+ G G+ K S +G+QL KQK++ Sbjct: 1 MAKMRQPRFKLSRRLGVNIYGHPKAM--KRAEGIKSRGK----KMSDYGIQLLEKQKVRA 54 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+FR ++A +S+ T L+ LE RLD +VYR F +I ARQ VNH H Sbjct: 55 YYG-VMEKQFRRYVEKAMKSKDVTGDALLKLLECRLDNLVYRIGFANSIRQARQMVNHGH 113 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVNHDNMVAT 178 +LVNG V+I SY K G+ + +K K ++ + + L R ++P YI ++DN Sbjct: 114 ILVNGSKVDIPSYEVKVGEEVTLKDKYRK-NEMFSNNFLELRTFELP-YIEKDYDNFTGK 171 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +RIP+ +++P V VVE YS+ Sbjct: 172 LIRIPNR-EEIPIEV--NEVAVVELYSK 196 >gi|319948696|ref|ZP_08022817.1| 30S ribosomal protein S4 [Dietzia cinnamea P4] gi|319437598|gb|EFV92597.1| 30S ribosomal protein S4 [Dietzia cinnamea P4] Length = 201 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 111/197 (56%), Gaps = 11/197 (5%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G + R + PG HG R + K S + QL+ KQK + YG + EK+FR Sbjct: 13 RRLGVDLVG-GDTAFERRPFPPGHHG-RARIKESEYRTQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA+R G T NL+ LESRLD +VYRA T ARQ V H H LVN + V I S Sbjct: 70 YYEEANRRAGKTGENLLQILESRLDNVVYRAGLARTRRQARQLVAHGHFLVNDQKVTIPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQ--LAERDVPEYISVNHDNMVATFVRIPSSLK-DV 189 YR + D+I+V+ KS ++ E +Q L ER VP ++ V + ++P + +V Sbjct: 130 YRVSQYDIIDVRPKSTKM-DWFEIAQETLGERPVPAWLQVVPTTLRILVHQLPERAQIEV 188 Query: 190 PYPVIMQPNLVVEFYSR 206 P +Q L+VE YS+ Sbjct: 189 P----LQEQLIVELYSK 201 >gi|260663356|ref|ZP_05864247.1| 30S ribosomal protein S4 [Lactobacillus fermentum 28-3-CHN] gi|260552208|gb|EEX25260.1| 30S ribosomal protein S4 [Lactobacillus fermentum 28-3-CHN] Length = 197 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 4/184 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRPYAPGDHGNDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI V++KSK L V++ + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQVIAVREKSKNL-DVIKGAVEAVVARPAYVEFDADKLEGKL 177 Query: 180 VRIP 183 R+P Sbjct: 178 TRLP 181 >gi|227502698|ref|ZP_03932747.1| ribosomal protein S4 [Corynebacterium accolens ATCC 49725] gi|227076428|gb|EEI14391.1| ribosomal protein S4 [Corynebacterium accolens ATCC 49725] Length = 178 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 106/179 (59%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK K YG + E++FR + EA+R G T NL+ Sbjct: 6 RPYPPGQAG-RNRIKESEYLLQLQEKQKAKYTYG-VLERQFRRYYTEANRLPGKTGDNLV 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE+RLD +VYRA T ARQ V+H H VNG+++NI SYR + D+I+V+ +S++ Sbjct: 64 ILLETRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKNINIPSYRITQYDIIDVRPRSQK 123 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + +A L + +VP ++ V D + ++P + D+P +Q L+VE YS+ Sbjct: 124 MEWFEDAQDALIDANVPAWLQVVPDTLRILVHQLPERAQIDIP----LQEQLIVELYSK 178 >gi|300857808|ref|YP_003782791.1| 30S ribosomal protein S4 [Corynebacterium pseudotuberculosis FRC41] gi|300685262|gb|ADK28184.1| 30S ribosomal protein S4 [Corynebacterium pseudotuberculosis FRC41] gi|302205543|gb|ADL09885.1| 30S ribosomal protein S4 [Corynebacterium pseudotuberculosis C231] gi|302330098|gb|ADL20292.1| 30S ribosomal protein S4 [Corynebacterium pseudotuberculosis 1002] gi|308275779|gb|ADO25678.1| 30S ribosomal protein S4 [Corynebacterium pseudotuberculosis I19] Length = 201 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 15/207 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 + R+S + ++D G+ + R R Y PG G R + K S + LQL+ KQK + Sbjct: 8 ATRKSRRLRVDLVGGDMAFER-------RPYPPGQAG-RARIKESEYLLQLQEKQKARFT 59 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG + EK+FR + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H Sbjct: 60 YG-VMEKQFRRYYAEANRLPGKTGDNLVILLEARLDNVVYRAGLARTRRQARQLVSHGHF 118 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFV 180 VNG+ +N+ SY+ + D+I+V++KS+++ EA + L + VP ++ V + Sbjct: 119 TVNGKKINVPSYKVSQYDIIDVREKSRKMIWFEEAQENLLDAVVPAWLQVVPSTLRILVH 178 Query: 181 RIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VEFYS+ Sbjct: 179 QLPERAQIDVP----LQEQLIVEFYSK 201 >gi|28572545|ref|NP_789325.1| 30S ribosomal protein S4 [Tropheryma whipplei TW08/27] gi|161486575|ref|NP_787506.2| 30S ribosomal protein S4 [Tropheryma whipplei str. Twist] gi|41017835|sp|Q83GC9|RS4_TROWT RecName: Full=30S ribosomal protein S4 gi|41017836|sp|Q83HV1|RS4_TROW8 RecName: Full=30S ribosomal protein S4 gi|28410677|emb|CAD67063.1| 30s ribosomal protein S4 [Tropheryma whipplei TW08/27] Length = 205 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 8/204 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 S+ ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ YG + Sbjct: 4 CSRTRLSRALGVPLTPKAARLMEVRPYPPGQHGRFRRKGDSDYAVRLREKQRLRGQYG-L 62 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+ S++ EA R +G NL+ LE RLD +V RA F +I ARQ V HRH+LV+G Sbjct: 63 REKQLASVYHEARRVKGLAGENLVEMLEMRLDALVLRAAFARSISQARQLVVHRHILVDG 122 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATFVR 181 + V+ SY G ++VK KS L A+ DV P YI + + + VR Sbjct: 123 KLVDRPSYSVSPGQTVKVKPKSVPLDPFQVAASGGHADVLPPIPGYIEADLEGLSFRLVR 182 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYS 205 P K PV LVVE+Y+ Sbjct: 183 RP---KRSEVPVTCNVQLVVEYYA 203 >gi|116624175|ref|YP_826331.1| 30S ribosomal protein S4P [Candidatus Solibacter usitatus Ellin6076] gi|122253109|sp|Q01WB9|RS4_SOLUE RecName: Full=30S ribosomal protein S4 gi|116227337|gb|ABJ86046.1| SSU ribosomal protein S4P [Candidatus Solibacter usitatus Ellin6076] Length = 210 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 4/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K + R++ PG HG+ R K +GLQLR KQK+++ YG + E++FR+ F++A +G Sbjct: 30 KCAIEKRNFIPGQHGKDRAKKIVGYGLQLREKQKVRRVYG-VLERQFRNAFEKAALQKGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD+++YR F + ARQ V H H+ VNGR NI S GD I V Sbjct: 89 TGENLMQNLERRLDSVIYRMGFGTSRAQARQVVRHGHINVNGRKCNIPSALINVGDEITV 148 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 ++ SK A++L A A P +I V+ + + +P ++ + + L+VE Sbjct: 149 RETSKNNATILSARDATAHAPAPNWIEVDREGLKGRVQSLPK--REDLVQIQLNEQLIVE 206 Query: 203 FYSR 206 YS+ Sbjct: 207 LYSK 210 >gi|300864160|ref|ZP_07109054.1| 30S ribosomal protein S4 [Oscillatoria sp. PCC 6506] gi|300337850|emb|CBN54200.1| 30S ribosomal protein S4 [Oscillatoria sp. PCC 6506] Length = 202 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KSP R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSP--RRAYPPGQHGQNRK-KRSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-ISERQLLRYVRKARRVTGSTGQVLLQMLEMRLDNTVFRMGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 V VN R+V+I S++CK GDV+ VK ++S+ L L+ LA +P ++ + +V Sbjct: 117 VTVNDRTVDIASFQCKPGDVVAVKNTERSRLLVEANLKYPGLAH--LPSHLEFDKQKLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +++ + + LVVE+YSR Sbjct: 175 ---KVNGTVEREWIALQVNELLVVEYYSR 200 >gi|254517498|ref|ZP_05129554.1| ribosomal protein S4 [Clostridium sp. 7_2_43FAA] gi|226911247|gb|EEH96448.1| ribosomal protein S4 [Clostridium sp. 7_2_43FAA] Length = 206 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 18/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG +K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGAAKK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E +FR+ +++AD +G T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKARRIYG-VLESQFRAYYEKADHMKGITGENLLKLLEMRLDNVVYRLGYGASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVN 171 VNH H LVN + V+I SYR D I V +KS+ + + +E + +P+++ N Sbjct: 119 LVNHGHFLVNDKKVDIPSYRVSVNDEITVTEKSRGTEKFKTFIENP----KTLPKWLEAN 174 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N V PS +D+ PV L+VE YS+ Sbjct: 175 VENYSGKIVAEPSR-EDIDVPV--NETLIVELYSK 206 >gi|111023124|ref|YP_706096.1| 30S ribosomal protein S4 [Rhodococcus jostii RHA1] gi|226365623|ref|YP_002783406.1| 30S ribosomal protein S4 [Rhodococcus opacus B4] gi|122955187|sp|Q0S3E8|RS4_RHOSR RecName: Full=30S ribosomal protein S4 gi|254764607|sp|C1B040|RS4_RHOOB RecName: Full=30S ribosomal protein S4 gi|110822654|gb|ABG97938.1| 30S ribosomal protein S4 [Rhodococcus jostii RHA1] gi|226244113|dbj|BAH54461.1| 30S ribosomal protein S4 [Rhodococcus opacus B4] Length = 201 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 15/205 (7%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R+S + ++D G+ + R R Y PG HG R + K S + LQL+ KQK + YG Sbjct: 10 RKSRRLRVDLVGGDQAFER-------RPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR +KEA+ G T NL+ LESRLD +VYRA T ARQ V H H+LV Sbjct: 62 -VMEKQFRLYYKEANNRPGKTGENLLRILESRLDNVVYRAGLARTRRQARQLVTHGHLLV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 N + V+I SYR + D+I+VK+KS L + +R +P ++ V + ++ Sbjct: 121 NNKKVDIPSYRVSQYDIIDVKEKSLSTLPFQVARETQGDRPIPGWLQVVGGRLRVLVHQL 180 Query: 183 PSSLK-DVPYPVIMQPNLVVEFYSR 206 P + DVP +Q L+VE+YS+ Sbjct: 181 PERAQIDVP----LQEQLIVEYYSK 201 >gi|253581361|ref|ZP_04858587.1| ribosomal protein S4 [Fusobacterium varium ATCC 27725] gi|251836725|gb|EES65259.1| ribosomal protein S4 [Fusobacterium varium ATCC 27725] Length = 195 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/163 (42%), Positives = 97/163 (59%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAIQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H HV VNGR VNI SYR K GDV+ V + SK L + A + E Sbjct: 98 GFAKTRRQARQVVSHGHVAVNGRRVNIASYRVKVGDVVSVIENSKNLDIIKTAVE--ESR 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 156 VPAWLELDKAAFSGKVIQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|255994833|ref|ZP_05427968.1| ribosomal protein S4 [Eubacterium saphenum ATCC 49989] gi|255993546|gb|EEU03635.1| ribosomal protein S4 [Eubacterium saphenum ATCC 49989] Length = 195 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 5/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + LQLR KQ+ K YG I EK+FR+ + +A R +G T N + LE RLD+IVYR Sbjct: 38 KMSEYALQLREKQRAKFIYG-ILEKQFRNTYNKAARKKGITGENFLVMLEMRLDSIVYRM 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V H H LVNG+ +NI S K GDVI+VK KS E Q+ Sbjct: 97 GFATTRREARQLVTHGHFLVNGKKLNIPSAELKVGDVIKVKNKSVSSPKFEEIRQM-RVG 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE++ V+ D + V IP+ + + P+ + +L+VEFYS+ Sbjct: 156 IPEWLEVSKDKLEGKVVSIPTR-EQIDTPI--EEHLIVEFYSK 195 >gi|152112239|sp|Q04E66|RS4_OENOB RecName: Full=30S ribosomal protein S4 Length = 204 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 1 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + R G N LE+RLD++V+R T ARQ VNH Sbjct: 60 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 119 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 178 LTRYPEREE---LGADINESLIVEYYNR 202 >gi|5163230|gb|AAD40609.1|AF115283_28 ribosomal protein S4 [Leptospira interrogans] Length = 207 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 9/202 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 KI RR G +L+ + N + GP +RK K S +G QLR +QK+K+ YG + Sbjct: 10 KIMRREGVDLFLKSSYTFNKDKFHRKGPPGMPTKRKGKVSEYGAQLREEQKLKRAYG-LL 68 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR ++EA + G T L+ LE RLD +VYR F T AR F+ HRH+LVNG Sbjct: 69 EKQFRRYYEEASHAHGVTGEILLQLLERRLDNVVYRLGFAITRRQARNFIAHRHILVNGE 128 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPS 184 V+I SYR GD +E+++K K + + + +L++ + +P ++S ++ N +P Sbjct: 129 RVDIPSYRLNVGDKVEIREKFKTSSFIADNIKLSQSLQGIPSWLSADYTNFGGDVTALPE 188 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + PV Q ++VE YS+ Sbjct: 189 R-HHIDLPVKEQ--VIVELYSK 207 >gi|164688743|ref|ZP_02212771.1| hypothetical protein CLOBAR_02390 [Clostridium bartlettii DSM 16795] gi|164602219|gb|EDQ95684.1| hypothetical protein CLOBAR_02390 [Clostridium bartlettii DSM 16795] Length = 197 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K RR+G N+ G PK+ G R K S +GLQL KQ+++ Sbjct: 1 MAKMMGPRFKQCRRLGLNVCGHPKAMDRA-----GRGTSRADKKLSPYGLQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+FR+ K+A++S+ T LI LE RLD +VYR F +I ARQ V H H Sbjct: 56 YYG-VLEKQFRNYVKKAEKSKESTGVALIQMLECRLDNVVYRLGFANSIRQARQMVVHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ + GD + +++KS+ E + + Y+S + D Sbjct: 115 ILVNGKKVDIPSFAVQVGDEVSLREKSRTNVMFKENFESGALNEYPYLSKDMDKFSGVLT 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + L+VEFYS+ Sbjct: 175 RLPERQE---VPIEIDEILIVEFYSK 197 >gi|38233157|ref|NP_938924.1| 30S ribosomal protein S4 [Corynebacterium diphtheriae NCTC 13129] gi|61215596|sp|Q6NJ64|RS4_CORDI RecName: Full=30S ribosomal protein S4 gi|38199416|emb|CAE49059.1| 30S ribosomal protein S4 [Corynebacterium diphtheriae] Length = 201 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR + EA+R G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLLQLQEKQKARFTYG-VLEKQFRRYYAEANRLPGKTGDNLV 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+ +N+ SYR + D+I+V++KS++ Sbjct: 87 ILLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKKINVPSYRVSQYDIIDVREKSQK 146 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA + L + VP ++ V + ++P + DVP +Q L+VE YS+ Sbjct: 147 MIWFEEAQENLLDAVVPAWLQVVPSTLRILVHQLPERAQIDVP----LQEQLIVELYSK 201 >gi|290890943|ref|ZP_06554007.1| hypothetical protein AWRIB429_1397 [Oenococcus oeni AWRIB429] gi|290479342|gb|EFD88002.1| hypothetical protein AWRIB429_1397 [Oenococcus oeni AWRIB429] Length = 250 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 47 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 105 Query: 60 KYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + R G N LE+RLD++V+R T ARQ VNH Sbjct: 106 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 164 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 165 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 223 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 224 LTRYPEREE---LGADINESLIVEYYNR 248 >gi|269123124|ref|YP_003305701.1| 30S ribosomal protein S4 [Streptobacillus moniliformis DSM 12112] gi|268314450|gb|ACZ00824.1| ribosomal protein S4 [Streptobacillus moniliformis DSM 12112] Length = 195 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 113/200 (56%), Gaps = 20/200 (10%) Query: 21 GRPKSPV--NTRSYG--PGLHGQRRKSK----------PSYFGLQLRAKQKMKKYYGDIS 66 R + P+ R+ G P + G +KSK + +G QLR KQK + YG + Sbjct: 2 ARDRQPILKKCRTLGLDPSILGVNKKSKRNIRPNANKKLTEYGTQLREKQKARFVYG-VM 60 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+F +++EA R G T L+ +LE RLD ++YR F T ARQ V+H H+L+NG+ Sbjct: 61 EKQFYKLYEEATRKEGVTGELLLQYLERRLDNVIYRLGFGSTRRQARQIVSHGHILINGK 120 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYR K+GDVI +K+ S +L+ + E+ + ++ VP ++S+ + A + P+ Sbjct: 121 RVDIASYRVKQGDVITLKEGSTELSIIKES--VGQKSVPGWLSLEEGTLTAKVLENPTR- 177 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 V + + +++EFYSR Sbjct: 178 DAVDFEI--NEAMIIEFYSR 195 >gi|88856256|ref|ZP_01130916.1| 30S ribosomal protein S4 [marine actinobacterium PHSC20C1] gi|88814575|gb|EAR24437.1| 30S ribosomal protein S4 [marine actinobacterium PHSC20C1] Length = 220 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 8/206 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R SK ++ R +G L + + R Y PG HG+ ++ + S + ++LR KQ+++ YG Sbjct: 17 RTRSKTRLSRALGIALTPKAAKYLEKRPYAPGEHGRTKRKQDSDYAVRLREKQRLRAQYG 76 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I E + + F+EA ++ G T NL+ LE RLD ++ R+ T ARQ + HRH+LV Sbjct: 77 -IREAQLKIQFEEARKTPGLTGENLVEQLEMRLDALLVRSAIARTTAQARQMIVHRHILV 135 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATF 179 +G+ V+ S+R K G ++ VK +S+ + ++ DV P Y+ V D + A Sbjct: 136 DGQLVDRPSFRVKPGQLMHVKARSEGMEIFQVSAAGGHVDVLPKTPGYLEVEIDKLQARL 195 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 VR P K PV + LVVE+Y+ Sbjct: 196 VRRP---KRAEVPVTCEVQLVVEYYA 218 >gi|118586622|ref|ZP_01544062.1| 30S ribosomal protein S4 [Oenococcus oeni ATCC BAA-1163] gi|118432937|gb|EAV39663.1| 30S ribosomal protein S4 [Oenococcus oeni ATCC BAA-1163] Length = 250 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 47 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 105 Query: 60 KYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + R G N LE+RLD++V+R T ARQ VNH Sbjct: 106 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 164 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 165 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 223 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 224 LTRYPEREE---LGADINESLIVEYYNR 248 >gi|110803742|ref|YP_699619.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] gi|123341536|sp|Q0SQI8|RS4B_CLOPS RecName: Full=30S ribosomal protein S4 B gi|110684243|gb|ABG87613.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] Length = 197 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 110/206 (53%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N+ G PK+ + G R K S +G+QL KQ+++ Sbjct: 1 MAKMMGPRFKMCRRLGLNVVGHPKA-MKRADRGTS----RADKKLSDYGIQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + E++F +A S+ L+ LESRLD +VYR F +I ARQ VNH H Sbjct: 56 YYG-VMERQFTRYVDQAFNSKEQPGEALLMILESRLDNMVYRMGFASSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG+ VNI S+R GD + +++KS++ + + + YIS DN F Sbjct: 115 FLVNGKKVNIPSFRLNIGDEVVLREKSRKTEMFVNNFKDSIGSEVPYISKEEDNFKGIFA 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P K P+ +Q L+VEFYS+ Sbjct: 175 RKP---KREEIPITIQEQLIVEFYSK 197 >gi|116491377|ref|YP_810921.1| SSU ribosomal protein S4P [Oenococcus oeni PSU-1] gi|116092102|gb|ABJ57256.1| SSU ribosomal protein S4P [Oenococcus oeni PSU-1] Length = 262 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 59 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 117 Query: 60 KYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + R G N LE+RLD++V+R T ARQ VNH Sbjct: 118 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 176 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 177 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 235 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 236 LTRYPEREE---LGADINESLIVEYYNR 260 >gi|75910501|ref|YP_324797.1| 30S ribosomal protein S4 [Anabaena variabilis ATCC 29413] gi|90101675|sp|Q3M534|RS4_ANAVT RecName: Full=30S ribosomal protein S4 gi|75704226|gb|ABA23902.1| SSU ribosomal protein S4P [Anabaena variabilis ATCC 29413] Length = 202 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGD-LPGLTRKSAR-RAYPPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR VNI SY+C+ G+ I V+ K+ K + + L+ LA ++P ++ + + +V Sbjct: 117 VTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLA--NLPSHLEFDKNKLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + V +Q N LVVE+YSR Sbjct: 175 KV----NGVIEREW-VALQVNELLVVEYYSR 200 >gi|317490401|ref|ZP_07948885.1| ribosomal protein S4 [Eggerthella sp. 1_3_56FAA] gi|325833388|ref|ZP_08165837.1| ribosomal protein S4 [Eggerthella sp. HGA1] gi|316910536|gb|EFV32161.1| ribosomal protein S4 [Eggerthella sp. 1_3_56FAA] gi|325485312|gb|EGC87781.1| ribosomal protein S4 [Eggerthella sp. HGA1] Length = 208 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R+Y PG G++R K S + QLR Sbjct: 1 MARYTGADCRLCRREGAKLFLKGDRCYTEKCAIERRNYAPGEAGKKR-IKESEYRNQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR + A+R +G T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKTKRIYG-VLEKQFRHYYDMANRQKGVTGENLLRILESRLDNVVYRLGFAKSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+ VNGR V+I S+R K GD++ V K+ L + A ER VP ++ V+ + Sbjct: 119 QVRHGHITVNGRRVDIPSFRVKPGDLVAVAPKAADLLVIKSALISNERVQVPAWLEVDIE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +P + + ++ L+VE YS+ Sbjct: 179 KLQGSVLALPQRDQ---IDLDIREQLIVELYSK 208 >gi|296119325|ref|ZP_06837893.1| ribosomal protein S4 [Corynebacterium ammoniagenes DSM 20306] gi|295967717|gb|EFG80974.1| ribosomal protein S4 [Corynebacterium ammoniagenes DSM 20306] Length = 178 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK K YG + E++FR + EA+R G T NL+ Sbjct: 6 RPYPPGQAG-RNRIKESEYLLQLQEKQKAKYTYG-VLERQFRRYYVEANRQPGKTGDNLV 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+ N+ SY+ + D+I+++++S++ Sbjct: 64 VLLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKKTNVPSYQVSQYDIIDIRERSQK 123 Query: 150 LASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA +L E VP ++ V + + ++P + DVP +Q L+VE YS+ Sbjct: 124 MEWFEEAQDRLGEAVVPAWLQVVPETLRILVHQLPERAQIDVP----LQEQLIVELYSK 178 >gi|237786335|ref|YP_002907040.1| 30S ribosomal protein S4 [Corynebacterium kroppenstedtii DSM 44385] gi|259495271|sp|C4LKZ2|RS4_CORK4 RecName: Full=30S ribosomal protein S4 gi|237759247|gb|ACR18497.1| 30S ribosomal protein S4 [Corynebacterium kroppenstedtii DSM 44385] Length = 201 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG I EK+FR + EA R G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLLQLQEKQKARFTYG-IMEKQFRRYYAEAHRRPGKTGDNLM 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+ VN+ S++ + D+I+V++KS++ Sbjct: 87 VLLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKKVNVPSFQVSQYDIIDVREKSRK 146 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA + LA+ VP ++ V + ++P + +VP +Q L+VEFYS+ Sbjct: 147 MVWFDEAQEALADAVVPAWLQVVPSTLRILVHQLPERAQIEVP----IQEQLIVEFYSK 201 >gi|312868744|ref|ZP_07728936.1| ribosomal protein S4 [Lactobacillus oris PB013-T2-3] gi|311095730|gb|EFQ53982.1| ribosomal protein S4 [Lactobacillus oris PB013-T2-3] Length = 201 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG+ R K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRVSRRLGVSLSGTGKE-LARRPYAPGDHGRDRHGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFANLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY VI V++KSK L +++ + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVDVNQVIGVREKSKNL-DIIKNAVDAVVSRPSYVDFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ +D+ + L+VEFY++ Sbjct: 178 NRIPAR-EDMDADI--DEALIVEFYNK 201 >gi|257792535|ref|YP_003183141.1| 30S ribosomal protein S4 [Eggerthella lenta DSM 2243] gi|257476432|gb|ACV56752.1| ribosomal protein S4 [Eggerthella lenta DSM 2243] Length = 208 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R+Y PG G++R K S + QLR Sbjct: 1 MARYTGADCRLCRREGAKLFLKGDRCYTEKCAIERRNYAPGEAGKKR-IKESEYRNQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR + A+R +G T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKTKRIYG-VLEKQFRHYYDMANRQKGVTGENLLRILESRLDNVVYRLGFAKSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+ VNGR V+I S+R K GD++ V K+ L + A ER VP ++ V+ + Sbjct: 119 QVRHGHITVNGRRVDIPSFRVKPGDLVAVAPKAADLLVIKSALISNERVQVPSWLEVDIE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +P +D + ++ L+VE YS+ Sbjct: 179 KLQGSVLALPQ--RD-QIDLDIREQLIVELYSK 208 >gi|303328069|ref|ZP_07358508.1| ribosomal protein S4 [Desulfovibrio sp. 3_1_syn3] gi|302861895|gb|EFL84830.1| ribosomal protein S4 [Desulfovibrio sp. 3_1_syn3] Length = 208 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K +I RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTEAKCRICRREGCKLFLKGDRCFTDKCAYDRRPYAPGQHGRARK-KVSEYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E++F F++A+ +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKTRRAYG-VLERQFHGYFEKAEMQKGVTGTNLLVILERRLDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NG V I S + K GD +EV +K++++ + EA + +A R P ++ + Sbjct: 119 LVRHGIFTLNGHKVTIPSLQVKVGDSVEVPEKNRKIPVLAEAQEVIARRGCPGWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P D+ +PV Q L+VE YS+ Sbjct: 179 AFKGTVKALPQR-DDIQFPVNEQ--LIVELYSK 208 >gi|28476386|gb|AAO44475.1| 30S ribosomal protein S4 [Tropheryma whipplei str. Twist] Length = 261 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 8/204 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 S+ ++ R +G L + + R Y PG HG+ R+ S + ++LR KQ+++ YG + Sbjct: 60 CSRTRLSRALGVPLTPKAARLMEVRPYPPGQHGRFRRKGDSDYAVRLREKQRLRGQYG-L 118 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 EK+ S++ EA R +G NL+ LE RLD +V RA F +I ARQ V HRH+LV+G Sbjct: 119 REKQLASVYHEARRVKGLAGENLVEMLEMRLDALVLRAAFARSISQARQLVVHRHILVDG 178 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATFVR 181 + V+ SY G ++VK KS L A+ DV P YI + + + VR Sbjct: 179 KLVDRPSYSVSPGQTVKVKPKSVPLDPFQVAASGGHADVLPPIPGYIEADLEGLSFRLVR 238 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYS 205 P K PV LVVE+Y+ Sbjct: 239 RP---KRSEVPVTCNVQLVVEYYA 259 >gi|134298120|ref|YP_001111616.1| 30S ribosomal protein S4 [Desulfotomaculum reducens MI-1] gi|172044238|sp|A4J138|RS4_DESRM RecName: Full=30S ribosomal protein S4 gi|134050820|gb|ABO48791.1| SSU ribosomal protein S4P [Desulfotomaculum reducens MI-1] Length = 208 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 8/185 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K ++ RSY PG HGQ RK K S +G+QLRAKQK ++ YG + EK FR+ F+ A+R G Sbjct: 30 KCAIDRRSYAPGQHGQGRK-KVSEYGIQLRAKQKARRIYG-VLEKPFRNYFEHAERQPGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR + ARQ V H H VNG+ VNI S++ + GD I V Sbjct: 88 TGENLLRLLERRLDNVVYRLGLGASRVEARQLVRHGHFTVNGKKVNIPSFQVRVGDEIAV 147 Query: 144 KQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVV 201 ++KSK + E + A+R P ++ + + +PS + D P ++ +L+V Sbjct: 148 REKSKASPRIKELVERAADRTTPAWLEYDGQEAKGRVIALPSRDQIDAP----VEEHLIV 203 Query: 202 EFYSR 206 E YSR Sbjct: 204 ELYSR 208 >gi|257067034|ref|YP_003153290.1| 30S ribosomal protein S4 [Anaerococcus prevotii DSM 20548] gi|256798914|gb|ACV29569.1| ribosomal protein S4 [Anaerococcus prevotii DSM 20548] Length = 197 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R+SK S +G+Q R KQK K YG +SEK+FR ++ A + +G T LI E RLD I Sbjct: 35 RRSKLSEYGMQQREKQKAKFIYG-VSEKQFRGYYEAASKMKGQTGEQLIILCERRLDNIA 93 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEAS 157 +R+ T ARQ V H H+ VNG+ V+I SY+ EGDVIEV++KS+ ++ E + Sbjct: 94 FRSGLARTRREARQIVTHGHLTVNGKQVDIPSYKVSEGDVIEVREKSRSNTLFKTIKETN 153 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A V E++S + +N+ T R P+ +D+ PV + ++VEFYS+ Sbjct: 154 --ATFGVVEWLSSDLENLKVTVDRFPTR-EDIDIPV--EERMIVEFYSK 197 >gi|225550541|ref|ZP_03771490.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379695|gb|EEH02057.1| ribosomal protein S4 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 202 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ S +K RR+G +L K + R+YGPG HG + K K S +G QL KQK+ Sbjct: 1 MSRYTGSIYKKSRRLGFSLLENNKEFNSGKKRTYGPGQHGNK-KVKLSNYGQQLVEKQKL 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +++++FR +++ A G + NL+ LESRLD++VYRA F PT AARQ VNH Sbjct: 60 MFLYG-LNDRQFRRLYRVALGRPGVLTLNLLQVLESRLDSLVYRAGFAPTRRAARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 HVLVNG+ VNI S + G I +K+KS ++ +++ + D E + D VA Sbjct: 119 SHVLVNGKKVNIPSALVEVGSTIALKEKSLEMP-LIKNTLNKPADFIELF--DKDKKVAK 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + VVE+Y+R Sbjct: 176 LSRLP---ERSELPADVNEAYVVEWYNR 200 >gi|110801413|ref|YP_697048.1| 30S ribosomal protein S4 [Clostridium perfringens ATCC 13124] gi|168210337|ref|ZP_02635962.1| ribosomal protein S4 [Clostridium perfringens B str. ATCC 3626] gi|123344499|sp|Q0TMU2|RS4B_CLOP1 RecName: Full=30S ribosomal protein S4 B gi|110676060|gb|ABG85047.1| 30S ribosomal protein S4 [Clostridium perfringens ATCC 13124] gi|170711584|gb|EDT23766.1| ribosomal protein S4 [Clostridium perfringens B str. ATCC 3626] Length = 197 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N+ G PK+ + G R K S +G+QL KQ+++ Sbjct: 1 MAKMMGPRFKMCRRLGLNVVGHPKA-MKRADRGTS----RADKKLSDYGIQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + E++F +A S+ L+ LESRLD +VYR F +I ARQ VNH H Sbjct: 56 YYG-VMERQFTRYVDQAFNSKEQPGEALLMILESRLDNMVYRMGFASSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG+ VNI S+R GD + +++KS++ + + + Y+S DN F Sbjct: 115 FLVNGKKVNIPSFRLNIGDEVVLREKSRKTEMFVNNFKDSIGSEVPYVSKEEDNFKGIFT 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P K P+ +Q L+VEFYS+ Sbjct: 175 RKP---KREEIPITIQEQLIVEFYSK 197 >gi|120402446|ref|YP_952275.1| 30S ribosomal protein S4 [Mycobacterium vanbaalenii PYR-1] gi|145225547|ref|YP_001136225.1| 30S ribosomal protein S4 [Mycobacterium gilvum PYR-GCK] gi|315445899|ref|YP_004078778.1| 30S ribosomal protein S4P [Mycobacterium sp. Spyr1] gi|152112236|sp|A1T519|RS4_MYCVP RecName: Full=30S ribosomal protein S4 gi|189045387|sp|A4TEJ4|RS4_MYCGI RecName: Full=30S ribosomal protein S4 gi|119955264|gb|ABM12269.1| SSU ribosomal protein S4P [Mycobacterium vanbaalenii PYR-1] gi|145218033|gb|ABP47437.1| SSU ribosomal protein S4P [Mycobacterium gilvum PYR-GCK] gi|315264202|gb|ADU00944.1| SSU ribosomal protein S4P [Mycobacterium sp. Spyr1] Length = 201 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 109/196 (55%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G +S R Y PG HG R + K S + QL+ KQK + YG + EK+FR Sbjct: 13 RRLGVDLVGGDQS-FEKRPYPPGQHG-RARIKESEYRTQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA+R G T NL+ LESRLD +VYRA T ARQ V+H H VNG V++ S Sbjct: 70 YYEEANRLPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFTVNGVKVDVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+VK KS A Q A ER +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIIDVKDKSINTLPFEVARQTAGERPIPGWLQVVGERQRILVHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VE YS+ Sbjct: 190 ----LTEQLIVELYSK 201 >gi|323483273|ref|ZP_08088663.1| hypothetical protein HMPREF9474_00412 [Clostridium symbiosum WAL-14163] gi|323691228|ref|ZP_08105504.1| ribosomal protein S4 [Clostridium symbiosum WAL-14673] gi|323403371|gb|EGA95679.1| hypothetical protein HMPREF9474_00412 [Clostridium symbiosum WAL-14163] gi|323504747|gb|EGB20533.1| ribosomal protein S4 [Clostridium symbiosum WAL-14673] Length = 197 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQLR KQK K YG + EK FR+ + +A + G NL+ LE RLD Sbjct: 33 KRANRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKASKMSGQVGTNLMILLECRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R F T RQ V+H+HVLVNG+ VNI SYR K GD IE+K+K S++ ++LE Sbjct: 92 VLFRMGFGRTRKETRQIVDHKHVLVNGKPVNIPSYRVKAGDTIEIKEKYKSSQRYKNILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + A R VP ++ + +N+ +P+ + DVP + L+VE YS+ Sbjct: 152 VT--AGRMVPAWLEADMENLKGVVKELPTRDEIDVPVNEV----LIVELYSK 197 >gi|254519679|ref|ZP_05131735.1| ribosomal protein S4 [Clostridium sp. 7_2_43FAA] gi|226913428|gb|EEH98629.1| ribosomal protein S4 [Clostridium sp. 7_2_43FAA] Length = 197 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 120/207 (57%), Gaps = 11/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K RR+G N++G PK+ +N G R K S +G++L KQ+++ Sbjct: 1 MARERGPRFKQSRRLGLNVYGHPKA-MNRAVKGT----SRADKKLSEYGVRLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG + EK+F+ ++A +++ G T L+ LESRLD +VYR F +I AARQ VNH Sbjct: 56 YYG-VLEKQFKKYVEDAFKTKEGTTGEALLLRLESRLDNLVYRIGFANSIRAARQMVNHG 114 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ ++I SY+ + G I + +K+++ + + +P YI N D A + Sbjct: 115 HILVDGKKIDIPSYKVEPGTEISLTEKARKSPNYISNINGHVNTLP-YIDSNLDEFKAVY 173 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L++ P+ + NL+VEFYSR Sbjct: 174 TRYP--LRE-EIPIQINENLIVEFYSR 197 >gi|108798084|ref|YP_638281.1| 30S ribosomal protein S4 [Mycobacterium sp. MCS] gi|119867180|ref|YP_937132.1| 30S ribosomal protein S4 [Mycobacterium sp. KMS] gi|126433744|ref|YP_001069435.1| 30S ribosomal protein S4 [Mycobacterium sp. JLS] gi|123070558|sp|Q1BD09|RS4_MYCSS RecName: Full=30S ribosomal protein S4 gi|152112233|sp|A3PVL7|RS4_MYCSJ RecName: Full=30S ribosomal protein S4 gi|152112234|sp|A1UBY4|RS4_MYCSK RecName: Full=30S ribosomal protein S4 gi|108768503|gb|ABG07225.1| SSU ribosomal protein S4P [Mycobacterium sp. MCS] gi|119693269|gb|ABL90342.1| SSU ribosomal protein S4P [Mycobacterium sp. KMS] gi|126233544|gb|ABN96944.1| SSU ribosomal protein S4P [Mycobacterium sp. JLS] Length = 201 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 114/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+G +L G +S R Y PG HG R + K S + QL+ KQK + Sbjct: 1 MARYTGPATRKSRRLGVDLVGGDQS-FEKRPYPPGQHG-RARIKESEYRTQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLEKQFRRYYDEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 VNG V+I SYR + D+I+V++KS + A + A +R +P ++ V + Sbjct: 118 FTVNGVKVDIPSYRVSQYDIIDVREKSLNTDPFVIARETAGDRPIPSWLQVVGERQRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP + L+VE YS+ Sbjct: 178 HQLPERAQIDVP----LTEQLIVELYSK 201 >gi|260655137|ref|ZP_05860625.1| ribosomal protein S4 [Jonquetella anthropi E3_33 E1] gi|260630059|gb|EEX48253.1| ribosomal protein S4 [Jonquetella anthropi E3_33 E1] Length = 206 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 2 SKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKM 58 +++ + K KI RR+G N++G K ++ ++ PG GQ RR K S +GLQL+ KQK+ Sbjct: 6 TRKTAPKGKIVRRLGANIFGNQKYDKLLSRKATPPG--GQPRRHGKQSIYGLQLQEKQKI 63 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SE++ ++ A + G T N++ LESRLD +VYR F T ARQ V H Sbjct: 64 RFSYG-VSERQLHKVYTLAKKMEGVTGSNMLILLESRLDNVVYRLGFCTTRPQARQLVCH 122 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVA 177 H VNGR V+I S R GDVI +++ SK + + E ++A P ++S++ Sbjct: 123 GHFAVNGRKVDIPSARVSAGDVISIRENSKDMKVLKENLEVASAVSQPAWLSLSGTE--G 180 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +R+P + V + +VVE+Y++ Sbjct: 181 TVLRLPERSEIV---CLADEQVVVEYYAK 206 >gi|282896815|ref|ZP_06304821.1| Ribosomal protein S4 [Raphidiopsis brookii D9] gi|281198224|gb|EFA73114.1| Ribosomal protein S4 [Raphidiopsis brookii D9] Length = 202 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGE-LPGLTRKSAR-RAYAPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ V+H H Sbjct: 58 NYG-LTEKQMLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTISAARQLVSHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V +NGR VNI SY+C+ G+ I VK K K + + L+ LA ++P ++ + + + Sbjct: 117 VTINGRVVNIASYQCRPGEEIGVKDKEASRKLVENNLQYPGLA--NLPNHLEFDKNKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVNGVIEREWVALQVNELLVVEYYSR 200 >gi|282901762|ref|ZP_06309677.1| Ribosomal protein S4 [Cylindrospermopsis raciborskii CS-505] gi|281193379|gb|EFA68361.1| Ribosomal protein S4 [Cylindrospermopsis raciborskii CS-505] Length = 202 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGE-LPGLTRKSAR-RAYAPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ V+H H Sbjct: 58 NYG-LTEKQMLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTISAARQLVSHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V +NGR VNI SY+C+ G+ I VK K K + + L+ LA ++P ++ + + + Sbjct: 117 VTINGRVVNIASYQCRPGEEIGVKDKEASRKLVENNLQYPGLA--NLPNHLEFDKNKLAG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVNGVIEREWVALQVNELLVVEYYSR 200 >gi|293376356|ref|ZP_06622593.1| ribosomal protein S4 [Turicibacter sanguinis PC909] gi|292645045|gb|EFF63118.1| ribosomal protein S4 [Turicibacter sanguinis PC909] Length = 169 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 11/166 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +GLQL+ KQK++ YG ++E++FR + +A + G N + LESRLD +VYR Sbjct: 12 KISEYGLQLQEKQKLRHAYG-MTERQFRRTYDKAGKLAGKHGENFLYMLESRLDNLVYRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T ARQ VNH H+ V+G+ V+I SY K G I +++KS LA V++AS A Sbjct: 71 GLAATRRQARQLVNHGHITVDGKRVDIPSYSVKPGQTISLREKSANLA-VVKASLEATIH 129 Query: 164 VPEYISVNHDNMVATFVRIPSS---LKDVPYPVIMQPNLVVEFYSR 206 P++++ + M T+VR+P D+ NL+VEFYSR Sbjct: 130 RPDFVTFDEATMTGTYVRLPERSEVFADI------HENLIVEFYSR 169 >gi|113474211|ref|YP_720272.1| 30S ribosomal protein S4 [Trichodesmium erythraeum IMS101] gi|123352777|sp|Q119M5|RS4_TRIEI RecName: Full=30S ribosomal protein S4 gi|110165259|gb|ABG49799.1| SSU ribosomal protein S4P [Trichodesmium erythraeum IMS101] Length = 202 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRIVRRLGD-LPGLTRKSAR-RAYPPGQHGQNRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++ K+A R+ G T L+ LE RLD V+R PTI +ARQ VNH H Sbjct: 58 NYG-VCERQLLRYVKKARRAGGSTGKVLLELLEMRLDNTVFRLGMAPTIPSARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 V VNG+ V+I SY+CK G+VI VK+K K V L+ LA ++P ++ + + +V Sbjct: 117 VTVNGKVVSIASYQCKPGEVISVKEKEKSKEMVKTNLQYPGLA--NIPSHLEFDKNKLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + V +Q N L+VE+YSR Sbjct: 175 KV----NGIVEREW-VALQINELLIVEYYSR 200 >gi|257463990|ref|ZP_05628375.1| 30S ribosomal protein S4 [Fusobacterium sp. D12] gi|317061512|ref|ZP_07925997.1| SSU ribosomal protein S4P [Fusobacterium sp. D12] gi|313687188|gb|EFS24023.1| SSU ribosomal protein S4P [Fusobacterium sp. D12] Length = 195 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 95/163 (58%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR ++ EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAIQLREKQKAKFIY-NVMEKQFRKLYDEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H HV VNGR VNI SYR K GDVI V + SK L + A A + Sbjct: 98 GFAKTRRQARQIVSHGHVTVNGRRVNIASYRVKVGDVIAVVENSKNLDIIKSAVDTA--N 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 156 APAWLQLDKAAFAGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|229823967|ref|ZP_04450036.1| hypothetical protein GCWU000282_01271 [Catonella morbi ATCC 51271] gi|229786321|gb|EEP22435.1| hypothetical protein GCWU000282_01271 [Catonella morbi ATCC 51271] Length = 202 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L K + R+Y PG HG +RK K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSETGKE-LARRNYAPGQHGNQRK-KISEYGLQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F++A + + G N ++ LE+RLD +VYR F T ARQ VNH Sbjct: 59 TYG-MNERQFATLFRKAGKIKTGKHGENFMALLETRLDNLVYRLGFATTRRQARQLVNHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP--EYISVNHDNMVA 177 HV V+G+ V+I SY G VI +++ S+ LA + EA E V +++S + Sbjct: 118 HVTVDGKRVDIPSYLVTPGQVIGLRESSRDLAIIKEA---LENTVSRLDFVSYDAAAFEG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R+P + + LVVE+Y++ Sbjct: 175 TLTRLP---ERSELNAEIDEALVVEYYNK 200 >gi|226305369|ref|YP_002765327.1| 30S ribosomal protein S4 [Rhodococcus erythropolis PR4] gi|229489412|ref|ZP_04383275.1| ribosomal protein S4 [Rhodococcus erythropolis SK121] gi|259495289|sp|C0ZW53|RS4_RHOE4 RecName: Full=30S ribosomal protein S4 gi|226184484|dbj|BAH32588.1| 30S ribosomal protein S4 [Rhodococcus erythropolis PR4] gi|229323509|gb|EEN89267.1| ribosomal protein S4 [Rhodococcus erythropolis SK121] Length = 201 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 113/204 (55%), Gaps = 13/204 (6%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R+S + ++D G+ + R R Y PG HG R + K S + LQL+ KQK + YG Sbjct: 10 RKSRRLRVDLVGGDQAFER-------RPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR +KEA+ G T NL+ LESRLD +VYRA T ARQ V H H+LV Sbjct: 62 -VMEKQFRLYYKEANNRPGKTGENLLRILESRLDNVVYRAGLARTRRQARQLVTHGHLLV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 N + V+I SYR + D+I+VK+KS L + + +R VP ++ V + ++ Sbjct: 121 NNKKVDIPSYRVSQYDIIDVKEKSLSTLPFQVARETVGDRPVPGWLQVVGSRLRILVHQL 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + + +Q L+VE+YS+ Sbjct: 181 PERAQ---IDIALQEQLIVEYYSK 201 >gi|30468054|ref|NP_848941.1| ribosomal protein S4 [Cyanidioschyzon merolae strain 10D] gi|30409154|dbj|BAC76103.1| 30S ribosomal protein S4 [Cyanidioschyzon merolae strain 10D] Length = 190 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 19/206 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G KSP N R+ PG H + + K S + +QL+ KQK++ Sbjct: 1 MSRYLGPRVRIIRRLGILPAFTNKSP-NKRTGVPGEHAHKTR-KLSEYAVQLQEKQKLQY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I+ + F++A +SR T L+ LE+RLD +VYRA F PT+ AARQ VNH H Sbjct: 59 YYG-ITNNQLARYFRQAKKSRASTGIELLKMLETRLDHVVYRAGFAPTLPAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG V I S+ C+ +IEVK KS A +P Y+ V + FV Sbjct: 118 VKVNGNQVTIASFACQVNHIIEVKAKSPSSA-----------QLPPYLQVENQ-----FV 161 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + LVVE+Y+R Sbjct: 162 KMIQPVEKDWLAFRVNELLVVEYYTR 187 >gi|229915463|gb|ACQ90808.1| ribosomal protein S4 [Oocystis solitaria] Length = 202 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + S+ +I RR+G+ L G TR PG HG K KPS +G++L+ KQK++ Sbjct: 1 MSRYKGSRLRIIRRLGK-LPGFTTK-TTTRKERPGQHGTSFK-KPSQYGIRLQEKQKIRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++ ++A + +G T NL+ LE RLD I++R F PTI AARQ + H H Sbjct: 58 NYG-ITERQLIRYVRQARKIKGSTGENLLQLLEMRLDNILFRFGFAPTIVAARQLITHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF 179 LVN + V I SY+C ++I + +K K + + Q E VP ++ ++ N++ T Sbjct: 117 FLVNNKKVTIPSYQCVSKEIISIAKKQKSVNLIKNFLLQSNETLVPPHLILDKQNLIGT- 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S++ + + L+VEFYSR Sbjct: 176 --INSTVNRQFIGLQLNELLIVEFYSR 200 >gi|257470859|ref|ZP_05634949.1| 30S ribosomal protein S4 [Fusobacterium ulcerans ATCC 49185] gi|317065062|ref|ZP_07929547.1| SSU ribosomal protein S4P [Fusobacterium ulcerans ATCC 49185] gi|313690738|gb|EFS27573.1| SSU ribosomal protein S4P [Fusobacterium ulcerans ATCC 49185] Length = 195 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAIQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H HV VNGR VNI SYR K GDV+ V + SK L + A + + Sbjct: 98 GFAKTRRQARQVVSHGHVAVNGRRVNIASYRVKVGDVVSVIENSKNLDIIKTAVE--DSR 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 156 VPAWLELDKAAFSGKVIQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|218439509|ref|YP_002377838.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 7424] gi|226697832|sp|B7KK85|RS4_CYAP7 RecName: Full=30S ribosomal protein S4 gi|218172237|gb|ACK70970.1| ribosomal protein S4 [Cyanothece sp. PCC 7424] Length = 202 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + ++ RR+GE L G + R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MARYRGPRLRVVRRLGE-LPGLTRKNAR-RAYPPGQHGQNRR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ + A R+ G T L+ LE RLD V+R TI AARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRRARRATGSTGQTLLQLLEMRLDNTVFRLGMAGTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 +LVN R V+I SY+C+ GDVI+V+ KS++L +E LA ++P ++ + + ++ Sbjct: 117 ILVNDRVVDIASYQCRPGDVIKVRDQDKSRKLVQANMEYPGLA--NLPSHLEFDKNTLIG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVNGVIEREWIALNINELLVVEYYSR 200 >gi|302868886|ref|YP_003837523.1| 30S ribosomal protein S4 [Micromonospora aurantiaca ATCC 27029] gi|302571745|gb|ADL47947.1| ribosomal protein S4 [Micromonospora aurantiaca ATCC 27029] Length = 202 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 7/201 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ R +G L + R Y PG+HG+ R++ S + ++L KQ+++ Y ++SE Sbjct: 7 KARLSRALGIPLTRKCVRYFERRPYPPGVHGRSRRTT-SDYQVRLLEKQRLRHQY-NVSE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R +F EA R G T L++ LE RLD +V RA +++ ARQ V H H+ V+GR Sbjct: 65 AQLRRLFDEAARGAGKTGETLVALLERRLDAVVLRAGLARSVYQARQLVAHGHITVDGRK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPE-YISVNHDNMVATFVRIPSS 185 V+ SYR + G V+ V+++S+ L L A+ P Y+S + AT VR P+ Sbjct: 125 VDRPSYRLRPGQVVGVRERSRALPPFQLAAAGAHADAQPRPYLSAQPAELRATLVREPAR 184 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + PV+ LVVEFYSR Sbjct: 185 HE---VPVVCDEQLVVEFYSR 202 >gi|311894846|dbj|BAJ27254.1| putative ribosomal protein S4 [Kitasatospora setae KM-6054] Length = 204 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 108/209 (51%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ ++ K KI R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQKRPKVKIARALGVPLTPKSVKYFEARPYPPGQHGRGRKQNSDY-KVRLTEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SEK+ F+ A + G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DLSEKQMARAFEAAKKIEGKTGEALVGLLEVRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG VN S++ K G V+ VK+KSK+ E E P+Y+ VN + Sbjct: 119 IEVNGAKVNKPSFQLKPGYVVTVKEKSKEKVPFQVAREGGNAGEGQTPKYLEVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++V PV+ LVVE+YSR Sbjct: 179 RLDRAPQR-REV--PVVCDEQLVVEYYSR 204 >gi|258645943|ref|ZP_05733412.1| ribosomal protein S4 [Dialister invisus DSM 15470] gi|260403312|gb|EEW96859.1| ribosomal protein S4 [Dialister invisus DSM 15470] Length = 197 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 19/211 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS----PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M+ ++ + K RR G N++G PK+ P TR + K S +GLQL KQ Sbjct: 1 MATNKNLRFKTSRRFGMNIYGHPKALKRQPAETR-----------QKKMSEYGLQLAEKQ 49 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K Y ++ E++F + +A R G NL+S LE+RLD +VYRA F +I ARQ V Sbjct: 50 KVKALY-NLLERQFYRYYDKARRMSGVVGENLLSLLETRLDNLVYRAGFARSIRQARQMV 108 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNM 175 +H + V+G+ V+I SY + G VI +K+ + +A +L D+P Y+ + DN Sbjct: 109 SHGLIAVDGKKVDIPSYPVRPGQVITLKEAYRTNEMFKQAFLELKSFDLP-YVEKSFDNW 167 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT VR P +++PY + L+VE YS+ Sbjct: 168 SATLVRTPLR-EELPYKDEVNETLIVELYSK 197 >gi|257453243|ref|ZP_05618542.1| 30S ribosomal protein S4 [Fusobacterium sp. 3_1_5R] gi|257467162|ref|ZP_05631473.1| 30S ribosomal protein S4 [Fusobacterium gonidiaformans ATCC 25563] gi|315918293|ref|ZP_07914533.1| SSU ribosomal protein S4P [Fusobacterium gonidiaformans ATCC 25563] gi|317059777|ref|ZP_07924262.1| SSU ribosomal protein S4P [Fusobacterium sp. 3_1_5R] gi|313685453|gb|EFS22288.1| SSU ribosomal protein S4P [Fusobacterium sp. 3_1_5R] gi|313692168|gb|EFS29003.1| SSU ribosomal protein S4P [Fusobacterium gonidiaformans ATCC 25563] Length = 195 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 67/163 (41%), Positives = 95/163 (58%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR ++ EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAIQLREKQKAKFIY-NVMEKQFRKLYDEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI SYR K GDVI V + SK L + A A + Sbjct: 98 GFAKTRRQARQIVSHGHITVNGRRVNIASYRVKVGDVIAVVENSKNLEIIKSAVDTA--N 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 156 APAWLQLDKAAFAGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|159027856|emb|CAO87069.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 202 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGE-LPGLTRKNAR-RAYAPGQHGQARK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VSEKQLVRYVRKARRATGSTGQVLLQLLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SY+C+ GDVI V+ + + V +E LA ++P ++ + + +V Sbjct: 117 VTVNGRVVDIASYQCRPGDVIGVRNQERSQDLVKRNMEYPGLA--NLPSHLEFDKNTLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVNGVVEREWIALSINELLVVEYYSR 200 >gi|227549867|ref|ZP_03979916.1| 30S ribosomal protein S4 [Corynebacterium lipophiloflavum DSM 44291] gi|227078122|gb|EEI16085.1| 30S ribosomal protein S4 [Corynebacterium lipophiloflavum DSM 44291] Length = 178 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR ++EA+R G T NL+ Sbjct: 6 RPYPPGQAG-RARIKESEYLLQLQEKQKARFIYG-VMEKQFRRYYEEANRLPGKTGDNLL 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+ N+ SYR D+I+V++KS+ Sbjct: 64 VLLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKRTNVPSYRVSRYDIIDVREKSRA 123 Query: 150 LASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA L + VP ++ V + + ++P + DVP +Q L+VE YS+ Sbjct: 124 MIWFEEAQDNLVDSVVPAWLQVVPETLRILVHQLPERAQIDVP----LQEQLIVELYSK 178 >gi|166365984|ref|YP_001658257.1| 30S ribosomal protein S4 [Microcystis aeruginosa NIES-843] gi|189045386|sp|B0JLP1|RS4_MICAN RecName: Full=30S ribosomal protein S4 gi|166088357|dbj|BAG03065.1| 30S ribosomal protein S4 [Microcystis aeruginosa NIES-843] Length = 202 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGE-LPGLTRKNAR-RAYAPGQHGQARK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRKARRATGSTGQVLLQLLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SY+C+ GDVI V+ + + V +E LA ++P ++ + + +V Sbjct: 117 VTVNGRVVDIASYQCRPGDVIGVRNQERSQDLVKRNMEYPGLA--NLPSHLEFDKNTLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVNGVVEREWIALSINELLVVEYYSR 200 >gi|317505828|ref|ZP_07963673.1| ribosomal protein S4 [Segniliparus rugosus ATCC BAA-974] gi|316255910|gb|EFV15135.1| ribosomal protein S4 [Segniliparus rugosus ATCC BAA-974] Length = 201 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 7/195 (3%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G K+ RSY PG HG R + K S + QL+ KQK + YG + E++FR+ Sbjct: 13 RRLRVDLVGGDKA-FERRSYPPGQHG-RSRVKESEYLTQLQEKQKARFTYG-VMERQFRN 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T NL+ LE+RLD ++YRA T ARQ V H H LVN + V++ S Sbjct: 70 YYEEAHRRTGKTGENLLRILETRLDNVIYRAGLARTRRHARQLVTHGHFLVNQKRVDVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YR + D+I+V+++S A +L +R VP ++ V D + FV + + Sbjct: 130 YRVSQYDIIDVREQSTHADPFEIARELFGDRPVPGWLQVVPDTL-RIFVHAEPVREQIDV 188 Query: 192 PVIMQPNLVVEFYSR 206 P +Q L+VEFYS+ Sbjct: 189 P--LQEQLIVEFYSK 201 >gi|256420685|ref|YP_003121338.1| ribosomal protein S4 [Chitinophaga pinensis DSM 2588] gi|256035593|gb|ACU59137.1| ribosomal protein S4 [Chitinophaga pinensis DSM 2588] Length = 201 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMK 59 M++ K KI R GE + G K + S PG HG RK K + LQLR KQK K Sbjct: 1 MARYTGPKTKISRIFGEPILGNGKY-LGKNSNPPGQHGVSRKRKQLGEYALQLREKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F EA+R +G T LI LE+RLD V+R P+ AARQ V+H+ Sbjct: 60 YTYG-VLERQFANLFVEANRRKGVTGEVLIKLLEARLDNAVFRLGIAPSRPAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +N+ SY+ K GD+I +K S + + ++ + ++ N + TF Sbjct: 119 HITVNGQVMNVPSYQLKPGDIIGLKA-SATTNTAITSNIRGKNPKFSWLDWNEKELKGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P + VP + Q L+VE YS+ Sbjct: 178 IAYPER-ESVPENIKEQ--LIVELYSK 201 >gi|224533471|ref|ZP_03674062.1| ribosomal protein S4 [Borrelia burgdorferi CA-11.2a] gi|224513375|gb|EEF83735.1| ribosomal protein S4 [Borrelia burgdorferi CA-11.2a] Length = 178 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 106/176 (60%), Gaps = 8/176 (4%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG+HG+ RK+K + +G QL KQK+K YG +SE++ + FKEA + G T NL+S LE Sbjct: 6 PGMHGKARKAKITEYGKQLIEKQKIKFTYG-VSERQLTNTFKEAKKHHGVTGDNLLSILE 64 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQL 150 R+D +VYRA F + ARQ V+H +++NGR V I S + D I++K+K K + Sbjct: 65 RRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLI 124 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S +E + + R++P +I VN D++ PS +D P + +VVE+YS+ Sbjct: 125 RSNIEKTS-SLRNLPTWIEVNADDLNIKVKHAPS--RD-EIPTLANEQMVVEYYSK 176 >gi|47458904|ref|YP_015766.1| 30S ribosomal protein S4 [Mycoplasma mobile 163K] gi|61215559|sp|Q6KIM1|RS4_MYCMO RecName: Full=30S ribosomal protein S4 gi|47458232|gb|AAT27555.1| 30s ribosomal protein s4 [Mycoplasma mobile 163K] Length = 199 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN--TRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ K RR G ++ K V R Y PG HGQRR K S FG+ KQK+ Sbjct: 1 MSRYVGPVFKRSRRFGFSILETGKEFVKGKQRQYAPGQHGQRR-GKLSDFGIHQLEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG I+E++FR+ F A++++G T + LESRLD IVYR F T ARQ VNH Sbjct: 60 RFMYG-INERQFRNTFAIANKAKGVTGTAFLQLLESRLDNIVYRMGFAQTRRQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H L+NG+ +I S R GD IE++ KS+ + ++L + + R V +I D Sbjct: 119 GHFLLNGKKADIPSQRINVGDTIELRAKSQNVPTIL--ASIETRVVAPWIE--KDKFKGK 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P K++ + L+VEFY++ Sbjct: 175 LIRVPER-KELNQEI--NEALIVEFYNK 199 >gi|237736197|ref|ZP_04566678.1| SSU ribosomal protein S4P [Fusobacterium mortiferum ATCC 9817] gi|229421750|gb|EEO36797.1| SSU ribosomal protein S4P [Fusobacterium mortiferum ATCC 9817] Length = 195 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAVQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H HV VNGR VNI SYR K GDVI + + SK L + + + + Sbjct: 98 GFAKTRRQARQIVSHGHVAVNGRRVNIASYRVKVGDVISIIENSKNLDII--KTSVEDAT 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 156 VPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|116494737|ref|YP_806471.1| ribosomal protein S4 [Lactobacillus casei ATCC 334] gi|191638248|ref|YP_001987414.1| 30S ribosomal protein S4 [Lactobacillus casei BL23] gi|239631669|ref|ZP_04674700.1| 30S ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066295|ref|YP_003788318.1| 30S ribosomal protein L4 [Lactobacillus casei str. Zhang] gi|122263845|sp|Q039U3|RS4_LACC3 RecName: Full=30S ribosomal protein S4 gi|226699078|sp|B3WDV5|RS4_LACCB RecName: Full=30S ribosomal protein S4 gi|116104887|gb|ABJ70029.1| SSU ribosomal protein S4P [Lactobacillus casei ATCC 334] gi|190712550|emb|CAQ66556.1| 30S ribosomal protein S4 [Lactobacillus casei BL23] gi|239526134|gb|EEQ65135.1| 30S ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438702|gb|ADK18468.1| Ribosomal protein S4 [Lactobacillus casei str. Zhang] gi|327382278|gb|AEA53754.1| 30S ribosomal protein S4 [Lactobacillus casei LC2W] gi|327385474|gb|AEA56948.1| 30S ribosomal protein S4 [Lactobacillus casei BD-II] Length = 203 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVNHDNMVA 177 H+ V+G+ V+I SY + G VI ++++S+ LA V EA E V P Y++ + Sbjct: 119 HITVDGKRVDIPSYEVEPGQVIALRERSQNLAIVNEA---IENTVSRPAYVTFDDTKKTG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + P + +LVVE+Y++ Sbjct: 176 SLVRLPERGELEPE---VDESLVVEYYNQ 201 >gi|227535269|ref|ZP_03965318.1| ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187153|gb|EEI67220.1| ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 239 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 37 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 95 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 96 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 154 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVNHDNMVA 177 H+ V+G+ V+I SY + G VI ++++S+ LA V EA E V P Y++ + Sbjct: 155 HITVDGKRVDIPSYEVEPGQVIALRERSQNLAIVNEA---IENTVSRPAYVTFDDTKKTG 211 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + P + +LVVE+Y++ Sbjct: 212 SLVRLPERGELEPE---VDESLVVEYYNQ 237 >gi|307154043|ref|YP_003889427.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 7822] gi|306984271|gb|ADN16152.1| ribosomal protein S4 [Cyanothece sp. PCC 7822] Length = 202 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + RSY PG HGQ R+ + Y ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGE-LPGLTRKNAR-RSYPPGQHGQARRKRSEY-AIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T L+ LE RLD ++R TI AARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRKARRATGSTGQVLLQLLEMRLDNTIFRLGMAGTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 +LVN + V+I SY+C+ GDVI+VK ++S++L +E LA ++P ++ + + + Sbjct: 117 ILVNDQVVDIASYQCRPGDVIKVKNQERSRKLVEANMEYPGLA--NLPSHLEFDKNTFIG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVEFYSR Sbjct: 175 ---KVNGVIEREWIALNINELLVVEFYSR 200 >gi|225552320|ref|ZP_03773260.1| ribosomal protein S4 [Borrelia sp. SV1] gi|225371318|gb|EEH00748.1| ribosomal protein S4 [Borrelia sp. SV1] Length = 189 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 8/180 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 + + PG+HG+ RK+K + +G QL KQK+K YG +SE++ + FKEA + G T NL+ Sbjct: 13 KPHPPGMHGKARKAKITEYGKQLIEKQKIKFTYG-VSERQLTNTFKEAKKHHGVTGDNLL 71 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-- 147 S LE R+D +VYRA F + ARQ V+H +++NGR V I S + D I++K+K Sbjct: 72 SILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIVLRTNDQIQIKEKDSL 131 Query: 148 -KQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 K + S +E + + R++P +I VN D++ PS +D P + +VVE+YS+ Sbjct: 132 KKLIRSNIEKTS-SLRNLPTWIEVNADDLNIKVKHAPS--RD-EIPTLANEQMVVEYYSK 187 >gi|206895668|ref|YP_002247308.1| ribosomal protein S4 [Coprothermobacter proteolyticus DSM 5265] gi|206738285|gb|ACI17363.1| ribosomal protein S4 [Coprothermobacter proteolyticus DSM 5265] Length = 210 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 13/206 (6%) Query: 10 KIDRRIGENLWGR------PKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMKKYY 62 +I RR G L+ + PK P+ R++ PG HG RR + + +GL+L+ KQK++ Y Sbjct: 9 RICRRSGVKLFLKGEKCLSPKCPMERRAFPPGQHGPTRRGKRDTEYGLRLKEKQKLRHSY 68 Query: 63 GDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 I+E + R F A +G T L+ LE RLD +V R F +I AR +V H HV Sbjct: 69 M-ITETQLRRYFSTAMSQKGVATGTALLQLLERRLDAVVQRMGFASSIKMARNWVRHGHV 127 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFV 180 +VNG+ V+I SY K GD I + + K V ++ + E R E+++V+ +N+ T++ Sbjct: 128 MVNGKRVDIPSYLVKPGDRITLDKDLKDNPDVQKSIAMNEGRPNLEWLNVDVENLEGTYL 187 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+PS + PV + L+VE+YSR Sbjct: 188 RVPSREE---IPVAVNEQLIVEYYSR 210 >gi|225387211|ref|ZP_03756975.1| hypothetical protein CLOSTASPAR_00963 [Clostridium asparagiforme DSM 15981] gi|225046690|gb|EEG56936.1| hypothetical protein CLOSTASPAR_00963 [Clostridium asparagiforme DSM 15981] Length = 159 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 99/165 (60%), Gaps = 11/165 (6%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S +GLQLR KQK K YG + EK FR+ + +A + G NL+ LE RLD +++R Sbjct: 2 SEYGLQLREKQKAKFIYG-VLEKPFRNYYAKASKMNGMVGTNLMILLECRLDNVLFRMGL 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLEASQLAER 162 T RQ V+H+HVLVNG+ VNI SYR K GDVIE+K+K +++ +LE + R Sbjct: 61 GRTRKETRQIVDHKHVLVNGKPVNIPSYRVKTGDVIEIKEKYKSAQRYKDILEVT--GGR 118 Query: 163 DVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 VP ++ V+ +N+ T +P+ + DVP + L+VE YS+ Sbjct: 119 MVPAWLDVDQENLRGTVKEMPTRDEIDVP----VNEMLIVELYSK 159 >gi|168704700|ref|ZP_02736977.1| 30S ribosomal protein S4 [Gemmata obscuriglobus UQM 2246] Length = 196 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 7/194 (3%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G+ +G PK P++ + PG+HG RR SK S +G++LR KQK+K++YG + E +FR + Sbjct: 7 GDRCFG-PKCPIDKQKPPPGMHGLRR-SKTSEYGIRLREKQKLKRFYG-VLEAQFRRYYG 63 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A ++ G+T L+S LE RLD +V+R F +ARQ V+H H+LVNG +I S Sbjct: 64 LATKAVGNTGEQLLSILERRLDNVVHRLGFAVNRTSARQMVSHGHILVNGVKCDIASMLV 123 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAERDVPEYISV--NHDNMVATFVRIPSSLKDVPYPV 193 K GDVI+VK + L + +P+++ + D R P+ +DV + Sbjct: 124 KPGDVIKVKTRDSSLKMARDTLAKGTVRIPDFLELTGTQDQPEGRMNRTPTR-QDVDERI 182 Query: 194 I-MQPNLVVEFYSR 206 ++ L++E +R Sbjct: 183 TDIREQLIIEIATR 196 >gi|320103641|ref|YP_004179232.1| 30S ribosomal protein S4P [Isosphaera pallida ATCC 43644] gi|319750923|gb|ADV62683.1| SSU ribosomal protein S4P [Isosphaera pallida ATCC 43644] Length = 209 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 11/188 (5%) Query: 23 PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PK + R PG+H Q R+ K S + +LR KQK+K+YYG + E++FR + EA+R G Sbjct: 29 PKCAIERRQTVPGMH-QTRRGKASEYAKRLREKQKVKRYYG-VYERQFRKYYAEANRLPG 86 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 +T L++ LE RLD +V R F + ARQ ++H H+LVNGR ++I SY + G+ I Sbjct: 87 NTGERLMALLERRLDNVVTRLGFAISRPQARQLISHGHILVNGRKLDIPSYLVRAGESIT 146 Query: 143 VKQK--SKQLAS-VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 +K + S+++ S L L VP+++ ++ D R+PS+ +D+ PV QP Sbjct: 147 LKDREHSRRVTSDNLHQENLPA--VPDWLERISEDPPEGRVSRLPSA-QDISLPV--QPQ 201 Query: 199 LVVEFYSR 206 L+VE SR Sbjct: 202 LIVELLSR 209 >gi|78185157|ref|YP_377592.1| 30S ribosomal protein S4 [Synechococcus sp. CC9902] gi|116072265|ref|ZP_01469532.1| 30S ribosomal protein S4 [Synechococcus sp. BL107] gi|123581244|sp|Q3AWW5|RS4_SYNS9 RecName: Full=30S ribosomal protein S4 gi|78169451|gb|ABB26548.1| SSU ribosomal protein S4P [Synechococcus sp. CC9902] gi|116064787|gb|EAU70546.1| 30S ribosomal protein S4 [Synechococcus sp. BL107] Length = 202 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G +L G + RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLG-DLPGLTRKAAK-RSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LESRLD I +R F PT+ +RQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLESRLDNICFRLGFGPTVPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNGR +I SY+ K GDV+ +++K SKQLA L L+ ++P ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQVKPGDVLAIREKKGSKQLAEGNLAFPGLS--NIPPHLELDKAKLSA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 175 ---KCTGRCEREWVALEINELLVVEYYSR 200 >gi|114319643|ref|YP_741326.1| SSU ribosomal protein S4P [Alkalilimnicola ehrlichii MLHE-1] gi|122312435|sp|Q0ABF1|RS4_ALHEH RecName: Full=30S ribosomal protein S4 gi|114226037|gb|ABI55836.1| SSU ribosomal protein S4P [Alkalilimnicola ehrlichii MLHE-1] Length = 206 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 118/204 (57%), Gaps = 14/204 (6%) Query: 10 KIDRRIGENLWGRPK-SPVNTRSY-----GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR G +L+ + P++++ GP L R+++ S +GLQLR KQK+++ YG Sbjct: 10 KLARREGTDLFLKSGVRPLDSKCKLDQPPGPKLQ---RRTRMSDYGLQLREKQKVRRMYG 66 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G T L+ LESRLD +VYR F T ARQ V+HR V V Sbjct: 67 -VLERQFRNYYKEAARQKGATGTVLLQLLESRLDNVVYRMGFATTRAEARQLVSHRGVQV 125 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRI 182 NGR VN+ S + GD++ +K+K+++ V A ++A+++ P ++ V+ T+ Sbjct: 126 NGRVVNVPSMQVSPGDLVGLKEKAQKQLRVQAALEMAQQNGWPAWVEVDPKKFEGTYKAR 185 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + +L+VE YS+ Sbjct: 186 PDR---ADLSAEINESLIVELYSK 206 >gi|16331506|ref|NP_442234.1| 30S ribosomal protein S4 [Synechocystis sp. PCC 6803] gi|1350999|sp|P48939|RS4_SYNY3 RecName: Full=30S ribosomal protein S4 gi|1001162|dbj|BAA10304.1| 30S ribosomal protein S4 [Synechocystis sp. PCC 6803] Length = 202 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE KSP R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLSRKSP--RRAYPPGQHGQARR-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+EK+ K+A R+ G T L+ LE RLD V+R TI ARQ V H H Sbjct: 58 NYG-ITEKQLVRYVKKARRATGSTGQALLELLEMRLDNTVFRLGMAGTIPGARQLVCHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG+ V+I SY+C+ GD++ V+ + K + + +E LA +VP ++ + + Sbjct: 117 ITVNGQVVDIPSYQCRPGDIVSVRDRDRSRKLVETNMEFPGLA--NVPSHLEFDKN---- 170 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 TF +S+ D + V +Q N LV+E+YSR Sbjct: 171 TFTGKVNSVIDREW-VALQINELLVIEYYSR 200 >gi|331268173|ref|YP_004347822.1| ribosomal protein S4 [Chlorella variabilis] gi|325296350|gb|ADZ05070.1| ribosomal protein S4 [Chlorella variabilis] Length = 207 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 117/215 (54%), Gaps = 19/215 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR------KSKPSYFGLQLRA 54 M++ K +I RR+GE L G + TR + PG HG ++ KSK S + ++L+ Sbjct: 1 MARYRGPKLRIIRRLGE-LPGLTQKSC-TREFPPGQHGPKKRGSGNQKSKESQYAVRLKE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ YG ISE++ S +EA R +G T L+ LE RLD I++R F PTI AARQ Sbjct: 59 KQKLRFNYG-ISERQLISYVREARRRKGSTGEILLQLLEMRLDNIIFRLGFAPTIAAARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 + H H+++N R V I SY CK D + + S++ + E P ++ +N + Sbjct: 118 MITHGHIVINKRRVTIPSYLCKIHDNVSIALNSEKFVKTVIERSTTELSAP-HLEINREK 176 Query: 175 MVATFVRIPSSLKDVPY-PVIMQPN--LVVEFYSR 206 A VR + VP V +Q N LVVEFYSR Sbjct: 177 FSA-IVR-----ETVPRDQVGLQINELLVVEFYSR 205 >gi|227541761|ref|ZP_03971810.1| 30S ribosomal protein S4 [Corynebacterium glucuronolyticum ATCC 51866] gi|227182467|gb|EEI63439.1| 30S ribosomal protein S4 [Corynebacterium glucuronolyticum ATCC 51866] Length = 178 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + +QL+ KQK + YG I EK+F ++EA R +G T NL+ Sbjct: 6 RPYPPGQAG-RARIKESEYLIQLQEKQKARFTYG-IMEKQFHRYYEEAARRKGKTGDNLV 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD ++YRA T ARQ V H H LVNG NI S++ + D+I+VK+KS++ Sbjct: 64 ILLESRLDNVIYRAGLARTRRQARQLVTHGHFLVNGVKTNIPSFQVSQYDIIDVKEKSRK 123 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA L + VP ++ V + ++P + D+P +Q L+VEFYS+ Sbjct: 124 MLWFEEAQDGLVDAVVPAWLQVVPSTLRILVHQLPERAQIDIP----LQEQLIVEFYSK 178 >gi|187776652|ref|ZP_02993125.1| hypothetical protein CLOSPO_00167 [Clostridium sporogenes ATCC 15579] gi|187775311|gb|EDU39113.1| hypothetical protein CLOSPO_00167 [Clostridium sporogenes ATCC 15579] Length = 197 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIVYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG VNI SY K GDVI +++K ++ + ++ YI ++D + Sbjct: 115 ILVNGSKVNIPSYGVKTGDVITLREKYRKNDEFADNFLALKKFTLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KEPE--RD-EIPIDANETLVVELYSK 197 >gi|11466526|ref|NP_044775.1| ribosomal protein S4 [Reclinomonas americana] gi|3914928|sp|O21263|RT04_RECAM RecName: Full=Ribosomal protein S4, mitochondrial gi|2258356|gb|AAD11890.1| ribosomal protein S4 [Reclinomonas americana] Length = 249 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 122/251 (48%), Gaps = 50/251 (19%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV----NTRS------------------YGPGLHG 38 M+KR SSK K+ + G N+WG K P NT+ Y P + G Sbjct: 1 MTKRLSSKQKVYTQTGINIWG--KGPFLWKNNTKDKWKNTPGEHKKKHKLLERYSPMIRG 58 Query: 39 Q---------------RRKSKPSYF----GLQLRAKQKMKKYYGDISEKKFRSIFKEADR 79 + + K SY+ QL+ KQK++K+Y +++EK+F + + +A Sbjct: 59 DSINEMNQLGYLIPKSKNEVKISYYEPRYASQLKEKQKLRKFYANVTEKQFYNYYVKAKS 118 Query: 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 +G NLI LE RLD I+YRA FV +I+ AR VNH+HVLVN + NI SY + GD Sbjct: 119 FKGKIGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQNGD 178 Query: 140 VIEVKQKSKQLA------SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPV 193 +I +K + L +L+ S + Y+ V++ M ++ P + ++ +P Sbjct: 179 MISIKPEIVNLLRNQYNWDILQKSNGSFLKYLPYLEVDYKTMSCIYLYTP-EMNEIYFPF 237 Query: 194 IMQPNLVVEFY 204 + N V+ +Y Sbjct: 238 QLDMNKVIRYY 248 >gi|323149221|ref|YP_004222050.1| ribosomal protein S4 [Coccomyxa sp. C-169] gi|317467277|gb|ADV29898.1| ribosomal protein S4 [Coccomyxa sp. C-169] Length = 202 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 113/208 (54%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE PK P + PG HG+ K K S +G++L+ KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLTPKLP--KKQAPPGQHGKTPK-KLSQYGIRLQEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E + +EA R +G T L+ LE RLD V+R PTI AARQ + H H Sbjct: 58 NYG-ITESQLIRYVREARRVKGSTGEILLQLLEMRLDNTVFRLGIAPTIAAARQLIRHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 VLVN + I SY+CK D + ++Q+ S++L + A ++ +P ++S D + Sbjct: 117 VLVNNQKTTIPSYQCKGKDAVSIQQRKQSRELVARFMADA-SQSSLPPHLSFTKDTLTGV 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +S+ + + LVVEFYSR Sbjct: 176 ---VATSIDRQSVGLKLNELLVVEFYSR 200 >gi|300932967|ref|ZP_07148223.1| 30S ribosomal protein S4 [Corynebacterium resistens DSM 45100] Length = 201 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G S R Y PG G R + K S + LQL+ KQK K YG + E++FR Sbjct: 13 RRLRVDLVG-GDSSFERRPYPPGQAG-RARIKESEYLLQLQEKQKAKYTYG-VLERQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H VNG+ N+ S Sbjct: 70 YYAEANRRPGKTGDNLVILLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKKTNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 +R + D+I+V++KS+ + EA + L + VP ++ V + ++P + D+P Sbjct: 130 FRVTQYDIIDVREKSRSMLWFEEAQERLVDAVVPAWLQVVPATLRILVHQLPERAQIDIP 189 Query: 191 YPVIMQPNLVVEFYSR 206 +Q L+VE YS+ Sbjct: 190 ----LQEQLIVELYSK 201 >gi|227487075|ref|ZP_03917391.1| ribosomal protein S4 [Corynebacterium glucuronolyticum ATCC 51867] gi|227093149|gb|EEI28461.1| ribosomal protein S4 [Corynebacterium glucuronolyticum ATCC 51867] Length = 201 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + +QL+ KQK + YG I EK+F ++EA R +G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLIQLQEKQKARFTYG-IMEKQFHRYYEEAARRKGKTGDNLV 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD ++YRA T ARQ V H H LVNG NI S++ + D+I+VK+KS++ Sbjct: 87 ILLESRLDNVIYRAGLARTRRQARQLVTHGHFLVNGVKTNIPSFQVSQYDIIDVKEKSRK 146 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA L + VP ++ V + ++P + D+P +Q L+VEFYS+ Sbjct: 147 MLWFEEAQDGLVDAVVPAWLQVVPSTLRILVHQLPERAQIDIP----LQEQLIVEFYSK 201 >gi|256826599|ref|YP_003150558.1| 30S ribosomal protein S4P [Cryptobacterium curtum DSM 15641] gi|256582742|gb|ACU93876.1| SSU ribosomal protein S4P [Cryptobacterium curtum DSM 15641] Length = 197 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S +G+QLR KQK K YG + EK+FR F+ A G T NL++ LESRLD I Sbjct: 34 KRRRKESEYGMQLREKQKAKFIYG-VQEKQFRGYFRRAKSQSGITGENLMAILESRLDNI 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H H+ VNG V+I SYR + GD+I V K+K+L + A Sbjct: 93 VFRLGFARTRREARQTVTHGHITVNGNRVDIPSYRVRPGDLIAVAPKAKELLVIKSALVS 152 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ER VP ++ V+ + + + + +P+ + + + L+VE YS+ Sbjct: 153 NERVQVPAWLEVDIEKLQGSVLSLPTREQ---IDLDINEQLIVELYSK 197 >gi|15617094|ref|NP_240307.1| 30S ribosomal protein S4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681846|ref|YP_002468232.1| 30S ribosomal protein S4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682401|ref|YP_002468785.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471551|ref|ZP_05635550.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387058|sp|P57567|RS4_BUCAI RecName: Full=30S ribosomal protein S4 gi|254764574|sp|B8D9S3|RS4_BUCA5 RecName: Full=30S ribosomal protein S4 gi|254764575|sp|B8D825|RS4_BUCAT RecName: Full=30S ribosomal protein S4 gi|25294492|pir||A84988 30S ribosomal protein S4 [imported] - Buchnera sp. (strain APS) gi|10039159|dbj|BAB13193.1| 30S ribosomal protein S4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622134|gb|ACL30290.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624689|gb|ACL30844.1| 30S ribosomal protein S4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086222|gb|ADP66304.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086799|gb|ADP66880.1| 30S ribosomal protein S4 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087386|gb|ADP67466.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087883|gb|ADP67962.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 206 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M+K K K+ RR G +L+ R PG HG R K + S + +QLR KQ Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGLRSIESKCKLEQPPGQHGIR-KPRLSDYAIQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F+ +K A +G+T NL+ LESRLD +VYR F T +RQ + Sbjct: 60 KVRRLYG-VLERQFKIYYKLAASLKGNTGANLLQLLESRLDNVVYRMGFGCTRSESRQLI 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 NH+ ++VN + VNI SY+ D I ++ KSK + + A +L E R+ P ++ VN M Sbjct: 119 NHKSIMVNNKVVNIASYQVSPNDQISIRNKSKNQSRIKAALELVEQREKPIWLEVNSTKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P D+ + L+VE YS+ Sbjct: 179 EGIFKRFPER-SDLSAEI--NEYLIVELYSK 206 >gi|229829399|ref|ZP_04455468.1| hypothetical protein GCWU000342_01489 [Shuttleworthia satelles DSM 14600] gi|229791830|gb|EEP27944.1| hypothetical protein GCWU000342_01489 [Shuttleworthia satelles DSM 14600] Length = 197 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 20/198 (10%) Query: 24 KSPVNTRSYGPGLH----GQRRKSK---------PSYFGLQLRAKQKMKKYYGDISEKKF 70 K+PV R GL G +KSK S +G QL+ KQK K YG + EK F Sbjct: 5 KTPVLKRCRSLGLDPVFLGVDKKSKRQPRNSRRKVSEYGKQLKEKQKAKFIYG-VLEKPF 63 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 R+ +++AD +G T NL++ LESRLD +V+R + T ARQ V+H+ V VNGR VNI Sbjct: 64 RNYYRQADVKKGQTGENLMTILESRLDNVVFRLGWARTRREARQIVDHKFVAVNGRKVNI 123 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLK-D 188 SY K GD++E+ +K K L + + ++ R +P+++ + +N+ AT +P+ + D Sbjct: 124 PSYLVKAGDLVEIVEKKKTLQRMKDIVEVTGGRMIPDWLEADTENLKATVKSLPTRDQID 183 Query: 189 VPYPVIMQPNLVVEFYSR 206 VP + +VE YS+ Sbjct: 184 VPVDEMQ----IVELYSK 197 >gi|154498912|ref|ZP_02037290.1| hypothetical protein BACCAP_02904 [Bacteroides capillosus ATCC 29799] gi|150271752|gb|EDM98978.1| hypothetical protein BACCAP_02904 [Bacteroides capillosus ATCC 29799] Length = 200 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/175 (42%), Positives = 99/175 (56%), Gaps = 9/175 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PG GQ RK K Y LQL KQK+K YG I EK+FRS +++A R G T NL+ +E Sbjct: 33 PG--GQMRKKKSEY-ALQLSEKQKVKFVYG-IMEKQFRSYYEKAARMPGKTGDNLLVLVE 88 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD VYR F T ARQ VNH H VNG+ V+I SY K GDVIEVK+ S+ A Sbjct: 89 RRLDNAVYRLGFANTRREARQLVNHGHFTVNGQRVDIPSYLVKAGDVIEVKEGSRSSAKF 148 Query: 154 --LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +P+++ + + T ++P +DV PV + +L+VE YS+ Sbjct: 149 KKLTGEDAPNVLLPQWLEREKNTLKGTVTKLPVR-EDVDLPV--EEHLIVELYSK 200 >gi|170078686|ref|YP_001735324.1| 30S ribosomal protein S4 [Synechococcus sp. PCC 7002] gi|226695087|sp|B1XI84|RS4_SYNP2 RecName: Full=30S ribosomal protein S4 gi|169886355|gb|ACB00069.1| ribosomal protein S4 [Synechococcus sp. PCC 7002] Length = 202 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ +I RR+GE L G + R Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MARYRGARLRITRRLGE-LPGLTRKSAR-REYPPGQHGQGRR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T ++ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRKARRTTGSTGQTILQLLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SY+C+ GDVI V+ + K + + +E LA ++P ++ + + Sbjct: 117 ILVNGRVVDIPSYQCRPGDVITVRDRDRSRKLIEANMEFPGLA--NIPSHLEFDKPTLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + V +Q N LVVE+YSR Sbjct: 175 KV----NGIIEREW-VALQINELLVVEYYSR 200 >gi|71842275|ref|YP_277363.1| ribosomal protein S4 [Emiliania huxleyi] gi|90101658|sp|Q4G3A4|RR4_EMIHU RecName: Full=30S ribosomal protein S4, chloroplastic gi|60101518|gb|AAX13862.1| ribosomal protein S4 [Emiliania huxleyi] Length = 202 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 122/210 (58%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +K +I RR+G+ L G S + R+ PG HG +K KP+ +G++L KQK++ Sbjct: 1 MARYRGAKLRITRRLGD-LPGL-TSKIAKRTSRPGQHGAVQK-KPTQYGIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISEK+ + ++A +G T L+ LE RLD +++R PTI AARQ V+H+H Sbjct: 58 NYG-ISEKQLMNYIRQAKGIKGTTGTILLQLLEMRLDNLIFRLGLAPTIAAARQLVSHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 + VN V+I SY+C+ GDV+ V+ SK L + LE+ L++ P+++ + N+ A Sbjct: 117 IQVNNTRVSIPSYQCQPGDVLSVRDNAASKSLVNTYLESPSLSQS--PQHLDFDKKNLTA 174 Query: 178 TFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + I D + + + V+E+YSR Sbjct: 175 KVLGIV----DREWVALKLNELFVIEYYSR 200 >gi|315504644|ref|YP_004083531.1| ribosomal protein s4 [Micromonospora sp. L5] gi|315411263|gb|ADU09380.1| ribosomal protein S4 [Micromonospora sp. L5] Length = 202 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 111/201 (55%), Gaps = 7/201 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K ++ R +G L + R Y PG+HG+ R++ S + ++L KQ+++ Y ++SE Sbjct: 7 KARLSRALGIPLTRKCVRYFERRPYPPGVHGRSRRTT-SDYQVRLLEKQRLRHQY-NVSE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R +F EA R G T L++ LE RLD +V RA +I+ ARQ V H H+ V+GR Sbjct: 65 AQLRRLFDEAARGAGKTGETLVALLERRLDAVVLRAGLARSIYQARQLVAHGHITVDGRK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPE-YISVNHDNMVATFVRIPSS 185 V+ S+R + G V+ V+++S+ L L A+ P Y+S + AT VR P+ Sbjct: 125 VDRPSHRLRPGQVVGVRERSRALPPFQLAAAGAHADAQPRPYLSAQPAELRATLVREPAR 184 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + PV+ LVVEFYSR Sbjct: 185 HE---VPVVCDEQLVVEFYSR 202 >gi|213964948|ref|ZP_03393147.1| ribosomal protein S4 [Corynebacterium amycolatum SK46] gi|213952484|gb|EEB63867.1| ribosomal protein S4 [Corynebacterium amycolatum SK46] Length = 201 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR + EA R G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRRYYAEAHRRPGKTGDNLV 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG+ +N+ S++ + D+I+V+ KS++ Sbjct: 87 VLLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKKINVPSFQVSQYDIIDVRPKSQK 146 Query: 150 LASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + EA + L + VP ++ V +++ + P + D+P +Q L+VEFYS+ Sbjct: 147 MIWFEEAQENLVDAVVPAWLQVVPESLRILVHQTPERAQIDIP----LQEQLIVEFYSK 201 >gi|199597503|ref|ZP_03210932.1| Ribosomal protein S4 [Lactobacillus rhamnosus HN001] gi|199591526|gb|EDY99603.1| Ribosomal protein S4 [Lactobacillus rhamnosus HN001] Length = 203 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 119/209 (56%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGNHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVNHDNMVA 177 H+ V+G+ ++I SY + G VI ++++S+ LA V EA E V P Y++ + + Sbjct: 119 HITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEA---IENTVSRPAYVTFDDNKKEG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + P + +LVVE+Y++ Sbjct: 176 SLVRLPERGELEPE---VDESLVVEYYNQ 201 >gi|258508250|ref|YP_003171001.1| 30S ribosomal protein S4P [Lactobacillus rhamnosus GG] gi|258539461|ref|YP_003173960.1| 30S ribosomal protein S4P [Lactobacillus rhamnosus Lc 705] gi|257148177|emb|CAR87150.1| SSU/30S ribosomal protein S4P [Lactobacillus rhamnosus GG] gi|257151137|emb|CAR90109.1| SSU/30S ribosomal protein S4P [Lactobacillus rhamnosus Lc 705] gi|259649567|dbj|BAI41729.1| 30S ribosomal protein S4 [Lactobacillus rhamnosus GG] Length = 203 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 119/209 (56%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVNHDNMVA 177 H+ V+G+ ++I SY + G VI ++++S+ LA V EA E V P Y++ + + Sbjct: 119 HITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEA---IENTVSRPAYVTFDDNKKEG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + P + +LVVE+Y++ Sbjct: 176 SLVRLPERGELEPE---VDESLVVEYYNQ 201 >gi|170761244|ref|YP_001788735.1| 30S ribosomal protein S4 [Clostridium botulinum A3 str. Loch Maree] gi|169408233|gb|ACA56644.1| 30S ribosomal protein S4 [Clostridium botulinum A3 str. Loch Maree] Length = 197 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYIKKAMKSKERTGDVLLRSLECRLDNIVYRIGFSSSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG +NI SY K GD+I +++K ++ + ++ YI ++D + Sbjct: 115 ILVNGGKINIPSYAVKIGDIITLREKYRKNDEFADNFLALKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P V P+ LVVE YS+ Sbjct: 175 KEPER---VEIPIDANETLVVELYSK 197 >gi|11467355|ref|NP_043212.1| ribosomal protein S4 [Cyanophora paradoxa] gi|1350893|sp|P48133|RR4_CYAPA RecName: Full=Cyanelle 30S ribosomal protein S4 gi|1016156|gb|AAA81243.1| ribosomal protein S4 [Cyanophora paradoxa] Length = 201 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + V R Y PG HGQ+ + K S + ++L KQK++ Sbjct: 1 MSRYKGPSLRIIRRLGE-LPGLTRKVVKKRKYPPGQHGQKSR-KRSEYAIRLEEKQKLRY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + A + +G T L+ LE RLD IV+R PTI A+RQ VNH H Sbjct: 59 NYG-LTERQLVQCVRRAKQMKGSTGQILLQLLEMRLDNIVFRLGMAPTIPASRQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL--AERDVPEYISVNHDNMVAT 178 + VN + V+I SY+CK GD+I VK+++ ++E + L ++P ++ + + Sbjct: 118 ICVNNKVVSIPSYQCKPGDIITVKERNAS-KKIVETNLLFPGLANLPSHLEFDKSKLQG- 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + L+VEFYSR Sbjct: 176 --KVNDIIQREWVALEVNELLIVEFYSR 201 >gi|21672746|ref|NP_660813.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654271|sp|P41186|RS4_BUCAP RecName: Full=30S ribosomal protein S4 gi|21623392|gb|AAM68024.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 206 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ + PG HG R K + S + +QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGFRSIDSKCKLEHPPGQHGVR-KPRLSDYAIQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR +K+A RS+G+T NL+ LE RLD +VYR F T +RQ + Sbjct: 60 KVRRLYG-VLERQFRIYYKKASRSKGNTGENLLQLLERRLDNVVYRMGFGCTRSESRQLI 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ + VN VNI SY+ D I V+ KSK + + A +L E R+ +I VN M Sbjct: 119 SHKSIKVNNNIVNIASYQISPNDRISVRDKSKNQSRIKAALELTEQREKLMWIEVNVTKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P D+ + +L+VE YS+ Sbjct: 179 EGIFKRFPER-SDLSAEI--NEHLIVELYSK 206 >gi|2541880|dbj|BAA22816.1| ribosomal protein S4 [Cyanidioschyzon merolae] Length = 191 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 104/196 (53%), Gaps = 19/196 (9%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G KSP N R+ PG H + + Y G QL+ KQK++ YYG I+ + Sbjct: 12 IRRRLGILPAFTNKSP-NKRTGVPGEHAHKTRKLSEYAG-QLQGKQKLQYYYG-ITNNQL 68 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 F++A +SR T L+ LE+RLD +VYRA F PT+ AARQ VNH HV VNG V I Sbjct: 69 ARYFRQAKKSRASTGIELLKMLETRLDHVVYRAGFAPTLPAARQLVNHGHVKVNGNQVTI 128 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVP 190 S+ C+ +IEVK KS A +P Y+ V + FV++ ++ Sbjct: 129 ASFACQVNHIIEVKAKSPSSA-----------QLPPYLQVENQ-----FVKMIQPVEKDW 172 Query: 191 YPVIMQPNLVVEFYSR 206 + LVVE+Y+R Sbjct: 173 LAFRVNELLVVEYYTR 188 >gi|229552047|ref|ZP_04440772.1| ribosomal protein S4 [Lactobacillus rhamnosus LMS2-1] gi|229314624|gb|EEN80597.1| ribosomal protein S4 [Lactobacillus rhamnosus LMS2-1] Length = 239 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 119/209 (56%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 37 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 95 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 96 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 154 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVNHDNMVA 177 H+ V+G+ ++I SY + G VI ++++S+ LA V EA E V P Y++ + + Sbjct: 155 HITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEA---IENTVSRPAYVTFDDNKKEG 211 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + P + +LVVE+Y++ Sbjct: 212 SLVRLPERGELEPE---VDESLVVEYYNQ 237 >gi|242620095|ref|YP_003002099.1| 30S ribosomal protein S4 [Aureococcus anophagefferens] gi|239997340|gb|ACS36863.1| 30S ribosomal protein S4 [Aureococcus anophagefferens] Length = 204 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 118/211 (55%), Gaps = 13/211 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR--KSKPSYFGLQLRAKQKM 58 MS+ K +I RR+GE L G + TR PG H + R ++ S + ++L+ KQK+ Sbjct: 1 MSRYRGPKIRIVRRLGE-LPGLT-AKTTTRETLPGQHKKVRGKQNNISSYSIRLQEKQKL 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++EK+ S KEA R +G T LI LE RLD IVYR TI A+RQ VNH Sbjct: 59 RYNYG-LTEKQLFSYVKEARRLKGSTGSVLIQLLEMRLDNIVYRLGIGNTIPASRQIVNH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNM 175 H+ VNG+ V I S++C DVIEV+ + SK+LA LE + VP+Y+ DN+ Sbjct: 118 GHIYVNGKKVTIPSFQCSPNDVIEVRNRVTSKELAKQYLEKP--SYNTVPQYLEFEKDNL 175 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+ ++ + + L+VE+YSR Sbjct: 176 KGKVKRVA---ENTETNLNINELLIVEYYSR 203 >gi|119512953|ref|ZP_01632015.1| 30S ribosomal protein S4 [Nodularia spumigena CCY9414] gi|119462406|gb|EAW43381.1| 30S ribosomal protein S4 [Nodularia spumigena CCY9414] Length = 202 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 120/211 (56%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGE-LPGLSRKTAR-RAYPPGQHGQNRK-KRSEYAVRLEEKQKIRM 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRKARRVTGSTGQVLLQMLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 V VNG+ V+I SY+C+ G+V+ ++ + K + + L+ LA ++P ++ + + Sbjct: 117 VTVNGKRVDIASYQCRPGEVVAIRDREASRKLVEANLQYPGLA--NLPSHLEFDKAKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +S+ + + V +Q N LVVE+YSR Sbjct: 175 KV----NSVIEREW-VALQVNELLVVEYYSR 200 >gi|312897333|ref|ZP_07756759.1| ribosomal protein S4 [Megasphaera micronuciformis F0359] gi|310621551|gb|EFQ05085.1| ribosomal protein S4 [Megasphaera micronuciformis F0359] Length = 195 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R ++ K RR G N++G PK+ + +R+ K S +G QL KQK++ Sbjct: 1 MATRREARFKQCRRFGVNVYGHPKALKRVKK-------DQRQKKMSEYGTQLLEKQKLRA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY ++ E++F + +A + G T N++ LE RLD +VYR F +I ARQ VNH H Sbjct: 54 YY-NLLERQFVRYYDKAKKQEGVTGENMLKLLECRLDNLVYRIGFANSIRQARQMVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LV+G+ V+I S + K G I +K+ S+ ++ Q + D+P YI N D T Sbjct: 113 ILVDGKRVDIPSAQVKVGSTITLKEGSRNNEMYKKSFQEVKTFDLP-YIEKNFDAFEGTL 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P P+ + L+VE YS+ Sbjct: 172 TRMPER---SELPLEINETLIVELYSK 195 >gi|328949100|ref|YP_004366437.1| ribosomal protein S4 [Treponema succinifaciens DSM 2489] gi|328449424|gb|AEB15140.1| ribosomal protein S4 [Treponema succinifaciens DSM 2489] Length = 197 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R + + K RR+G N+ G PK+ R+ P ++ K S +G QL KQK+K Sbjct: 1 MATRRNPRFKECRRLGVNVCGHPKA--MNRANDPAF---KKSKKTSEYGKQLCEKQKVKA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I E++ R + A R G T NLI LE+RLD +VYR F +I ARQ V+H H Sbjct: 56 YYG-ILERQLRRYYDIASRKEGKTGENLIVGLETRLDNLVYRIGFANSIRMARQVVSHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G+ ++I S++ K G V+ + +K+++ + R YI V+ + + Sbjct: 115 VRVDGKKISIPSFQVKPGQVVALCEKAQKNEQFKTSFLNGNRRPLAYIEVSEEAFSGKLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P K PV + LVVEFYS+ Sbjct: 175 MMP---KREEIPVEINEQLVVEFYSK 197 >gi|328463108|gb|EGF34871.1| 30S ribosomal protein S4 [Lactobacillus rhamnosus MTCC 5462] Length = 203 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 119/209 (56%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV--PEYISVNHDNMVA 177 H+ V+G+ ++I SY + G VI ++++S+ LA V EA E V P Y++ + + Sbjct: 119 HITVDGKRLDIPSYEVQLGQVIGLRERSQNLAVVNEA---IENTVSRPAYVTFDDNKKEG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P + P + +LVVE+Y++ Sbjct: 176 SLVRLPERGELEPE---VDESLVVEYYNQ 201 >gi|149071984|ref|YP_001293516.1| ribosomal protein S4 [Rhodomonas salina] gi|172048713|sp|A6MVT7|RR4_RHDSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|134302935|gb|ABO70739.1| ribosomal protein S4 [Rhodomonas salina] Length = 202 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/211 (38%), Positives = 121/211 (57%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + R+ PG HG + + KPS + ++L KQK++ Sbjct: 1 MSRYRGAVVRIIRRLGE-LPGLTRK-TTRRNSRPGQHGDQPR-KPSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A R +G T L+ LE RLD IV+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVKDAKRIKGSTGEALLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQ--KSKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 + VN + V+I SY+C+ DVI V+ +SKQL + L LA ++P ++ ++ + +V Sbjct: 117 ICVNAKRVSIPSYQCQTTDVISVRNNARSKQLVENYLSFPGLA--NIPSHLEIDKEKLVG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 I +D V +Q N L+VE+YSR Sbjct: 175 KVNGIIE--RDW---VALQLNELLIVEYYSR 200 >gi|319442996|ref|ZP_07992152.1| 30S ribosomal protein S4 [Corynebacterium variabile DSM 44702] Length = 201 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 116/208 (55%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S + RR+ +L G +S R Y PG G R + K S + QL+ KQK + Sbjct: 1 MARYTGSATRKSRRLRVDLVGGDRS-FERRPYPPGQAG-RGRIKESEYLTQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VMEKQFRRYYAEANRRPGKTGANLVILLETRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VNG+ +N+ S++ + D+I+V+ +S+ + EA + L + VP ++ V + Sbjct: 118 FTVNGKKINVPSFQVSQYDIIDVRDRSRSMLWFEEAQENLLDSVVPAWLQVVPSTLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + DVP +Q L+VEFYS+ Sbjct: 178 HQLPERAQIDVP----LQEQLIVEFYSK 201 >gi|291302390|ref|YP_003513668.1| 30S ribosomal protein S4 [Stackebrandtia nassauensis DSM 44728] gi|290571610|gb|ADD44575.1| ribosomal protein S4 [Stackebrandtia nassauensis DSM 44728] Length = 203 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R K K R +G L + R + PG HG+RR+S+ Y +L KQ++++ Y Sbjct: 3 RPRPKAKRSRALGIALTPKCVKYFERRPFPPGQHGRRRRSESDY-SRRLLEKQRLREQY- 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 +I E + + F EA R G T NL+S LE RLD V RA F TI+ +RQ V HRH LV Sbjct: 61 NIREAQMKRAFAEAVRRDGKTGDNLVSLLERRLDAFVLRAGFARTIYQSRQQVVHRHFLV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFV 180 NGR V+ SYR K GDV++V S+ + +P Y+ + A + Sbjct: 121 NGRRVDKPSYRLKPGDVVQVAPGSRDKTPFQLAAAGAWAGSGPLPGYLEAKLPELKARLI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P + PV+ LVVEFYSR Sbjct: 181 AEPPRAQ---VPVVCDEQLVVEFYSR 203 >gi|159040306|ref|YP_001539559.1| 30S ribosomal protein S4 [Salinispora arenicola CNS-205] gi|157919141|gb|ABW00569.1| RNA-binding S4 domain protein [Salinispora arenicola CNS-205] Length = 202 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/180 (41%), Positives = 100/180 (55%), Gaps = 9/180 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R + PG HG+ RKS S + ++L KQ++K Y +SE + R F A R T LI Sbjct: 29 RPFPPGQHGRSRKST-SDYKVRLLEKQRLKAQY-HVSEGQLRRAFTRAARLESKTGEALI 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE+RLD +V R+ TI+ ARQ V HRHV VNG V+ S R + GDVI V +S+ Sbjct: 87 VDLETRLDALVLRSGLARTIYQARQVVTHRHVTVNGHRVDRPSARLRPGDVIAVTARSRT 146 Query: 150 LASVLEASQLA---ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A L A+ A ER P Y++V+ ++ A +R+P + PV Q LVVE YSR Sbjct: 147 KAPFLVAAAGAHAPERSAP-YLAVDLADLTARLLRLPLRSE---VPVTCQEQLVVEHYSR 202 >gi|168335041|ref|ZP_02693154.1| 30S ribosomal protein S4 [Epulopiscium sp. 'N.t. morphotype B'] Length = 196 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 14/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKS-KPSYFGLQLRAKQKMK 59 M+K + K+ R +G N+ G PK+ + G R + K S +G+QL KQ+++ Sbjct: 1 MAKMMGPRFKMCRSLGVNVVGHPKAMDRAK------QGTSRDARKLSEYGVQLLEKQRLR 54 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG + EK+F ++A R+ + +++ LE RLD IVYR F + ARQ VNH Sbjct: 55 SYYG-VLEKQFVRYVEKAFRAGSNPGPIILTSLEMRLDNIVYRMGFARSTRQARQMVNHG 113 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNMVAT 178 H L+NG+ V+ SY KEGD I +K+KS++ S + A +A + Y+ ++ DN+ T Sbjct: 114 HFLINGQKVDRPSYALKEGDTITLKEKSRE--SKIFAENMAGNNFALPYLEMDIDNLTGT 171 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R P+ + P+ + L++EFYSR Sbjct: 172 IIRKPTREE---LPIEINEQLIIEFYSR 196 >gi|13358061|ref|NP_078335.1| 30S ribosomal protein S4 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762225|ref|YP_001752581.1| 30S ribosomal protein S4 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920263|ref|ZP_02690589.2| ribosomal protein S4 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508584|ref|ZP_02689436.2| ribosomal protein S4 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701633|ref|ZP_02553689.2| ribosomal protein S4 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|26399528|sp|Q9PPZ2|RS4_UREPA RecName: Full=30S ribosomal protein S4 gi|189045404|sp|B1AJD7|RS4_UREP2 RecName: Full=30S ribosomal protein S4 gi|11276522|pir||A82883 ribosomal protein S4 UU498 [imported] - Ureaplasma urealyticum gi|6899497|gb|AAF30910.1|AE002148_2 ribosomal protein S4 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827802|gb|ACA33064.1| ribosomal protein S4 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902667|gb|EDT48956.1| ribosomal protein S4 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676037|gb|EDT87942.1| ribosomal protein S4 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700867|gb|EDU19149.1| ribosomal protein S4 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 202 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 117/208 (56%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ S +K RR+G +L K + R+YGPG HG + K K S +G QL KQK+ Sbjct: 1 MSRYTGSIYKKSRRLGFSLLENNKEFNSGKKRTYGPGQHGNK-KVKLSNYGQQLVEKQKL 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +++++FR +++ A G + NL+ LESRLD++VYRA F PT AARQ VNH Sbjct: 60 MFLYG-LNDRQFRRLYRVALGRPGVLTLNLLQVLESRLDSLVYRAGFAPTRRAARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 HVLVN + VNI S + G I +K KS ++ +++ + D E I + + VA Sbjct: 119 SHVLVNNKKVNIPSALVEVGSTIALKAKSLEI-PLIKNTLNKPADFIELI--DKEKKVAK 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + VVE+Y+R Sbjct: 176 LARLPERNE---LPADVNEAYVVEWYNR 200 >gi|32172406|sp|O22020|RR4_CYAME RecName: Full=30S ribosomal protein S4, chloroplastic Length = 190 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 19/206 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G KSP N R+ PG H + + Y G+ L+ +QK++ Sbjct: 1 MSRYLGPRVRIIRRLGILPAFTNKSP-NKRTGVPGEHAHKTRKLSEYAGV-LQGEQKLQY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I+ + F++A +SR T L+ LE+RLD +VYRA F PT+ AARQ VNH H Sbjct: 59 YYG-ITNNQLARYFRQAKKSRASTGIELLKMLETRLDHVVYRAGFAPTLPAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG V I S+ C+ +IEVK KS A +P Y+ V + FV Sbjct: 118 VKVNGNQVTIASFACQVNHIIEVKAKSPSSA-----------QLPPYLQVENQ-----FV 161 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + LVVE+Y+R Sbjct: 162 KMIQPVEKDWLAFRVNELLVVEYYTR 187 >gi|325108696|ref|YP_004269764.1| 30S ribosomal protein S4P [Planctomyces brasiliensis DSM 5305] gi|324968964|gb|ADY59742.1| SSU ribosomal protein S4P [Planctomyces brasiliensis DSM 5305] Length = 202 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 109/208 (52%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS--PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + K +I+RR+G ++ + R PG+H QRRK KP+ +G L KQK+ Sbjct: 1 MGRYTGPKARINRRLGSPVFESAGALRASEKRDSPPGMH-QRRK-KPTIYGAALTEKQKI 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG E++ R F EA R +G+T NL+ E RLD +V RA F T ARQ + H Sbjct: 59 KYYYG-FRERQLRKYFNEARRLKGNTGQNLLVLCERRLDNVVRRAGFAQTRPQARQAIVH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H +NGR+VN S + + GDVI V+ + A E A+ E++SV+ + Sbjct: 118 SHFQLNGRTVNKPSIQVRAGDVITVRNRPNLHAIYKEQVGRADTAACEFVSVDDSALKIV 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP + DV PV + N VV F SR Sbjct: 178 VSAIP-TFADVSLPVDV--NQVVAFLSR 202 >gi|320160440|ref|YP_004173664.1| 30S ribosomal protein S4 [Anaerolinea thermophila UNI-1] gi|319994293|dbj|BAJ63064.1| 30S ribosomal protein S4 [Anaerolinea thermophila UNI-1] Length = 212 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 14/207 (6%) Query: 10 KIDRRIGENLWGR------PKSPVNTRSYGPGLHG---QRRKSKPSYFGLQLRAKQKMKK 60 K+ RR GE L+ + PK R + PG HG Q R + S + QLRAKQK ++ Sbjct: 10 KLCRREGEKLFLKGERCYSPKCSFEKRGFAPGQHGRTQQGRSERESDYARQLRAKQKARR 69 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR F A R +G T NL+ LE RLD +V+R F + ARQ VNH H Sbjct: 70 VYG-IFERQFRRYFGLALRKKGLTGLNLLQTLEMRLDNVVFRMGFASSRAQARQLVNHGH 128 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 + VN +I S K GD+I VK+ ++ L + + + R P +I + N+ Sbjct: 129 IQVNNHRADIPSMLVKPGDIISVKESARSLTYWKDLLDVVDRRTCPMWIDRDTKNLSGRI 188 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P + L+VE+YSR Sbjct: 189 LRLPER---SEIDGNLNEQLIVEYYSR 212 >gi|3122760|sp|O22029|RR4B_CYACA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2541890|dbj|BAA22825.1| ribosomal protein S4 [Cyanidium caldarium] Length = 192 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/147 (43%), Positives = 89/147 (60%), Gaps = 3/147 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G KSP R+ PG H + + K S F +QL+ KQK++ Sbjct: 1 MSRYLGPRVRVIRRLGALPALTNKSP-KKRTIAPGEHAHKTR-KLSEFAVQLQEKQKLQY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I+ + F++A RS+ T L++ LE+RLD +VYRA F PT+ AARQ VNH H Sbjct: 59 YYG-ITNSQLARYFRQARRSKSSTGLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS 147 V VNG+ V I S+ C+ VIEVK S Sbjct: 118 VKVNGKKVTIASWACEVNHVIEVKSSS 144 >gi|13508185|ref|NP_110134.1| 30S ribosomal protein S4 [Mycoplasma pneumoniae M129] gi|1173262|sp|P46775|RS4_MYCPN RecName: Full=30S ribosomal protein S4 gi|639791|gb|AAA61698.1| ribosomal protein S4 [Mycoplasma pneumoniae] gi|1674077|gb|AAB96043.1| ribosomal protein S4 [Mycoplasma pneumoniae M129] gi|301633685|gb|ADK87239.1| ribosomal protein S4 [Mycoplasma pneumoniae FH] Length = 205 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 111/207 (53%), Gaps = 9/207 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 K S K RR+G +L K S R PG HG R R S S + QL+ KQ+M+ Sbjct: 2 KYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRMQ 61 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I++K+FR +F+ + RG+ + NL LESRLD IVYR F PT +ARQ VNH Sbjct: 62 YMYG-ITDKQFRRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHG 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HVL+N R+V+ S GD + +K K+ ++ V AS+ V ++ N+ T+ Sbjct: 121 HVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASESGV--VSPFVETNNKTFEGTY 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + P + + VVE+Y R Sbjct: 179 VRFPERSE---LPAGINESYVVEWYKR 202 >gi|289422683|ref|ZP_06424523.1| ribosomal protein S4 [Peptostreptococcus anaerobius 653-L] gi|289156862|gb|EFD05487.1| ribosomal protein S4 [Peptostreptococcus anaerobius 653-L] Length = 201 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/202 (36%), Positives = 112/202 (55%), Gaps = 15/202 (7%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K+ RR+G N+ G PK+ +N G R K S +G+QL KQ+++ YYG +SE Sbjct: 9 KFKLSRRLGLNVCGHPKA-MNRAGKGTA----RSDKKLSPYGMQLLEKQRLRAYYG-VSE 62 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R K+A +++G T +I LE RLD +VYR +I ARQ V H ++ VNGR Sbjct: 63 KQMRIYMKKAQKAKGPTGIAVIRTLECRLDNLVYRMGLANSIRQARQMVGHGNIHVNGRK 122 Query: 128 VNIGSYRCKEGDVIEVKQK---SKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 VNI S+ GD I +++K ++ + EA+ L E Y++ + N A R+P Sbjct: 123 VNIPSFIVSVGDEISLREKYRTNELFKANFEAAALNEHP---YLTKDQANYSAVLTRLPE 179 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + P+ + +LVVEFYS+ Sbjct: 180 REE---VPIEINDSLVVEFYSK 198 >gi|158320966|ref|YP_001513473.1| 30S ribosomal protein S4 [Alkaliphilus oremlandii OhILAs] gi|172048008|sp|A8MI45|RS4B_ALKOO RecName: Full=30S ribosomal protein S4 B gi|158141165|gb|ABW19477.1| RNA-binding S4 domain protein [Alkaliphilus oremlandii OhILAs] Length = 197 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ R +G N++G PK+ G R K S +GLQL KQK++ Sbjct: 1 MAKMMEPRFKLSRSLGVNIYGHPKAMQRA-----GKTAGRASKKLSSYGLQLLEKQKLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F ++A ++ G + LI LE RLD +VYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFVIYVEKAMKASGLSGEALIQSLECRLDNMVYRMGFASSIREARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNMVATF 179 +LVNG+ V+ SY + D + ++++S+++ L S L + +YI + + Sbjct: 115 ILVNGKKVDRPSYPIQVDDAVALRERSQKIEKYL--SNLKNTTINFDYIETDVSSFTGRL 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +RIP+ +++P V Q LV+EFYS+ Sbjct: 173 LRIPNR-EEIPVEVNEQ--LVIEFYSK 196 >gi|258543843|ref|ZP_05704077.1| 30S ribosomal protein S4 [Cardiobacterium hominis ATCC 15826] gi|258520932|gb|EEV89791.1| 30S ribosomal protein S4 [Cardiobacterium hominis ATCC 15826] Length = 159 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 99/164 (60%), Gaps = 9/164 (5%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S +G QLR KQK+K+ YG + E++FR+ +K+A + +G T NL+ FLE RLD +VYR + Sbjct: 2 SDYGNQLREKQKLKRIYG-VLERQFRNYYKKASQKKGSTGENLLQFLEQRLDNVVYRMGY 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAER 162 T ARQ V+H + VNG+ V I SY+ + DV+ V++KS++ + S LE + A+R Sbjct: 61 GATRAEARQLVSHGAIEVNGKRVTIASYQVRAEDVVAVREKSRKQVRIQSSLEVA--AQR 118 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ V+ M F R+P + + +LVVE YS+ Sbjct: 119 GFVDWVEVDTAKMSGLFKRVPER---IDLSADINESLVVELYSK 159 >gi|148381346|ref|YP_001255887.1| ribosomal protein S4 [Clostridium botulinum A str. ATCC 3502] gi|153933373|ref|YP_001385723.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 19397] gi|153936972|ref|YP_001389130.1| 30S ribosomal protein S4 [Clostridium botulinum A str. Hall] gi|170755963|ref|YP_001783043.1| 30S ribosomal protein S4 [Clostridium botulinum B1 str. Okra] gi|171769228|sp|A7FZ00|RS4B_CLOB1 RecName: Full=30S ribosomal protein S4 B gi|172047867|sp|A5I7D0|RS4B_CLOBH RecName: Full=30S ribosomal protein S4 B gi|148290830|emb|CAL84965.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 3502] gi|152929417|gb|ABS34917.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 19397] gi|152932886|gb|ABS38385.1| 30S ribosomal protein S4 [Clostridium botulinum A str. Hall] gi|169121175|gb|ACA45011.1| 30S ribosomal protein S4 [Clostridium botulinum B1 str. Okra] Length = 197 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD I YR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIAYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG VNI SY K GDVI +++K ++ + ++ YI ++D + Sbjct: 115 ILVNGSKVNIPSYEVKTGDVITLREKYRKNDEFADNFLALKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KEPE--RD-EIPIDANETLVVELYSK 197 >gi|259046817|ref|ZP_05737218.1| 30S ribosomal protein S4 [Granulicatella adiacens ATCC 49175] gi|259036440|gb|EEW37695.1| 30S ribosomal protein S4 [Granulicatella adiacens ATCC 49175] Length = 203 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G QL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IARRPYAPGQHGPNSRKKLSEYGQQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK+A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFATLFKKAGKIKEGKHGENFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ V+I S++ + GDV+ V++KS+ L + EA + A PE+++ + + + + Sbjct: 119 HITVNGKRVDIPSFQVQVGDVVGVREKSRNLTIIKEALE-ALYGRPEFVTFDEEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L+D + + +LVVE+Y++ Sbjct: 178 NRLP--LRDELTSEVDE-SLVVEYYNK 201 >gi|254421878|ref|ZP_05035596.1| ribosomal protein S4 [Synechococcus sp. PCC 7335] gi|196189367|gb|EDX84331.1| ribosomal protein S4 [Synechococcus sp. PCC 7335] Length = 202 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 121/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ L G + ++Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGD-LPGLTRKSAR-KAYPPGQHGQARKKK-SEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ K+A R+ G T ++ LE RLD ++R PTI AARQ VNH H Sbjct: 58 NYG-VTERQLLRYVKKARRAGGSTGQVILQQLEMRLDNTIFRLGMGPTIPAARQVVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 + VNGR V+I SY+C+ GDVI V K+ SK+L + LE LA ++P ++ + + A Sbjct: 117 ITVNGRVVSIPSYQCRPGDVIGVRGKEASKKLVTANLEFPGLA--NIPTHLDFDKGKLEA 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + LVVE+YSR Sbjct: 175 ---KVTGVIEREWIALNINELLVVEYYSR 200 >gi|169830463|ref|YP_001716445.1| RNA-binding S4 domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|226732175|sp|B1I1B2|RS4_DESAP RecName: Full=30S ribosomal protein S4 gi|169637307|gb|ACA58813.1| RNA-binding S4 domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 208 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ ++ RR G L+ + P+ V+ R PG H R+ K + FG+QLR Sbjct: 1 MARYTDARCRLCRREGTKLYLKGDRCYSPRCAVDRRPAPPGQHTPSRR-KVTEFGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR+ F +A+R G T NL+ LE RLD ++YR + ARQ Sbjct: 60 KQKVRRIYG-VLESQFRNYFHKAERQPGVTGENLLRLLELRLDNVIYRLGLGASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H VNGR V+I SY+ + GDVI V+++SK L + E + +E + P ++ + + Sbjct: 119 LVRHGHFKVNGRKVDIPSYQVRVGDVIAVRERSKGLTRIQELLDRASENNPPAWLEYDGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VA V +P+ +++ PV Q LVVE YSR Sbjct: 179 RAVARVVALPTR-ENIDIPVREQ--LVVELYSR 208 >gi|227485499|ref|ZP_03915815.1| ribosomal protein S4 [Anaerococcus lactolyticus ATCC 51172] gi|227236498|gb|EEI86513.1| ribosomal protein S4 [Anaerococcus lactolyticus ATCC 51172] Length = 197 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 9/170 (5%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+SK S +G+Q R KQK K YG +SEK+FR + +A R +G T LI E RLD + Sbjct: 34 KRRSKLSEYGMQQREKQKAKFIYG-VSEKQFRGYYDKASRMKGQTGEQLIILCERRLDNV 92 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEA 156 +R+ T ARQ V H H+LVNG+ V+I SY +EGDVIEV++KSK ++ E Sbjct: 93 AFRSGLARTRREARQIVTHGHLLVNGKQVDIPSYLIEEGDVIEVREKSKSSTLFKTIKEV 152 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A V E+++ + +N+ + P+ +++ PV + ++VEFYS+ Sbjct: 153 N--AAFGVVEWLNSDIENLKVKVEKFPTR-EEIDIPV--EERMIVEFYSK 197 >gi|11467651|ref|NP_050703.1| ribosomal protein S4 [Guillardia theta] gi|133950|sp|P17072|RR4_GUITH RecName: Full=30S ribosomal protein S4, chloroplastic gi|70879|pir||R3MD4 ribosomal protein S4, chloroplast - Cryptomonas sp. chloroplast (strain phi) gi|3602976|gb|AAC35637.1| ribosomal protein S4 [Guillardia theta] Length = 200 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 14/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+GE L G + S PG HG + + KPS + ++L KQK++ Sbjct: 1 MSRYRGAVIKIIRRLGE-LPGLTRKTTTRTSR-PGQHGTQAR-KPSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R +G T L+ LE RLD +++R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLQYVRTAKRIKGSTGEALLQLLEMRLDNVIFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 + VN V+I SY+CK GD+I ++Q K + V L+ LA ++P ++ ++ DN+ Sbjct: 117 IKVNNTRVSIPSYQCKAGDMISIRQHPKSQSIVKNYLQFPGLA--NMPNHLQIDKDNLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I +D V + L+VE+YSR Sbjct: 175 KINGIIE--RDW---VALNELLIVEYYSR 198 >gi|257068798|ref|YP_003155053.1| 30S ribosomal protein S4 [Brachybacterium faecium DSM 4810] gi|256559616|gb|ACU85463.1| SSU ribosomal protein S4P [Brachybacterium faecium DSM 4810] Length = 208 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R + ++ R +G L + R Y PG HG+ R+ S + ++L+ KQ+++ YG Sbjct: 6 RARRQARLSRALGLPLTPKSVKYFEKRPYPPGEHGRARRRTESDYAVRLKEKQRLRAQYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+ + +A + G T +++ LE RLD +V RA F T ARQ V HRHVLV Sbjct: 66 -LREKQMHRAYLDAKKEPGLTGESMVELLEMRLDALVLRAGFARTTLQARQAVVHRHVLV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV----PEYISVNHDNMVATF 179 +G+ V+ S+R G I++K KS+ + A++ DV P Y+SV + A Sbjct: 125 DGKLVDRPSFRVAPGQTIQIKPKSQAMEPFQIAAEGGNSDVLASTPSYLSVELPELKAQL 184 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V P K PV + +VVE+Y+R Sbjct: 185 VSRP---KRAEVPVTVDVQMVVEYYAR 208 >gi|300779797|ref|ZP_07089653.1| 30S ribosomal protein S4 [Corynebacterium genitalium ATCC 33030] gi|300533907|gb|EFK54966.1| 30S ribosomal protein S4 [Corynebacterium genitalium ATCC 33030] Length = 201 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/179 (39%), Positives = 103/179 (57%), Gaps = 8/179 (4%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R Y PG G R + K S + LQL+ KQK + YG + EK+FR ++EA+R G T NL+ Sbjct: 29 RPYPPGQAG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRRYYEEANRLPGKTGDNLL 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESRLD +VYRA T ARQ V+H H VNG N+ SY+ + D+I+V++KS+ Sbjct: 87 VLLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGVKTNVPSYQVTQYDIIDVREKSRN 146 Query: 150 LASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + +A L + VP ++ V + + ++P + DVP +Q L+VE YS+ Sbjct: 147 MLWFEDAQDNLVDSVVPAWLQVVPETLRILVHQLPERAQIDVP----LQEQLIVELYSK 201 >gi|153937935|ref|YP_001392762.1| 30S ribosomal protein S4 [Clostridium botulinum F str. Langeland] gi|171769264|sp|A7GJ02|RS4B_CLOBL RecName: Full=30S ribosomal protein S4 B gi|152933831|gb|ABS39329.1| 30S ribosomal protein S4 [Clostridium botulinum F str. Langeland] gi|295320741|gb|ADG01119.1| 30S ribosomal protein S4 [Clostridium botulinum F str. 230613] Length = 197 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD I YR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIAYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG VNI SY K GDVI +++K ++ + ++ YI ++D + Sbjct: 115 ILVNGSKVNIPSYEVKAGDVITLREKYRKNDEFADNFLSLKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KEPE--RD-EIPIDANETLVVELYSK 197 >gi|71277977|ref|YP_267375.1| 30S ribosomal protein S4 [Colwellia psychrerythraea 34H] gi|90101683|sp|Q488Y9|RS4_COLP3 RecName: Full=30S ribosomal protein S4 gi|71143717|gb|AAZ24190.1| ribosomal protein S4 [Colwellia psychrerythraea 34H] Length = 206 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RR + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIETIPGQHGARR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ +G + EK+F + +KEA R +G+T NL+ LE+RLD +VYR + T ARQ V Sbjct: 60 KVRRIFG-VLEKQFSNYYKEAARQKGNTGENLLQLLETRLDNVVYRMGYASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ ++VNG VNI S+ K D + V++KSK A ++ A +LA +R+ P ++ V+ + Sbjct: 119 SHKAIVVNGVVVNIPSFTVKAEDTVSVREKSKTQARIIAALELADQREKPLWVEVDTKKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P D+ + Q L+VE YS+ Sbjct: 179 EGVFKRVPDR-ADLSAEINEQ--LIVELYSK 206 >gi|269217219|ref|ZP_06161073.1| ribosomal protein S4 [Slackia exigua ATCC 700122] gi|269129356|gb|EEZ60441.1| ribosomal protein S4 [Slackia exigua ATCC 700122] Length = 198 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 100/168 (59%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S + +QLR KQK K YG + EK+FR F++A R G T NL+ LESRLD + Sbjct: 35 QRRRKESEYAIQLREKQKAKFIYG-VLEKQFRGYFRKAKRMSGITGENLMRILESRLDNV 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H H+LVNGR V++ S+R + GD++ V K+K L + A Sbjct: 94 VFRLGFARTRKEARQTVTHGHILVNGRRVDVPSFRVRPGDLVSVAPKAKDLLVIKSALVS 153 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ER VP ++ V+ + + + + +P+ + + ++ L+VE YS+ Sbjct: 154 NERVQVPAWLEVDIEKLQGSVLALPNRDQ---IDLDIKEQLIVELYSK 198 >gi|42527448|ref|NP_972546.1| 30S ribosomal protein S4 [Treponema denticola ATCC 35405] gi|61215636|sp|Q73LC2|RS4_TREDE RecName: Full=30S ribosomal protein S4 gi|41818033|gb|AAS12457.1| ribosomal protein S4 [Treponema denticola ATCC 35405] gi|325473706|gb|EGC76895.1| 30S ribosomal protein S4 [Treponema denticola F0402] Length = 206 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 108/202 (53%), Gaps = 7/202 (3%) Query: 8 KHKIDRRIGENLWGRPK--SPVNTRSYGPGLH-GQRRKSKPSYFGLQLRAKQKMKKYYGD 64 K K RR+G N++G PK ++ + GPG G R++ K S +G QL+ KQK + YG Sbjct: 7 KGKTVRRLGVNIYGNPKYDKLLDRKPNGPGKERGARKRGKTSVYGEQLKEKQKFRFAYG- 65 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ISE++FR+++K+A R G T N+IS +E RLD +YR F + ARQ V H + +N Sbjct: 66 ISERQFRNLYKKASRMPGVTGDNMISLMEQRLDNTIYRMGFAISRAQARQMVTHAYFFIN 125 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 G+ VNI S DVI K K + ++ +++++ + + AT +P Sbjct: 126 GKPVNIPSMCVSVNDVITTKNKKGIQNLIRHNMSTSQSARGSWLTIDDEKLSATVNILPV 185 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + P I VVE+YSR Sbjct: 186 TTDIQPVGNIQN---VVEYYSR 204 >gi|312140890|ref|YP_004008226.1| 30S ribosomal protein s4 rpsd [Rhodococcus equi 103S] gi|325675472|ref|ZP_08155156.1| 30S ribosomal protein S4 [Rhodococcus equi ATCC 33707] gi|311890229|emb|CBH49547.1| 30S ribosomal protein S4 RpsD [Rhodococcus equi 103S] gi|325553443|gb|EGD23121.1| 30S ribosomal protein S4 [Rhodococcus equi ATCC 33707] Length = 201 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 19/207 (9%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 R+S + ++D G+ + R R Y PG HG R + K S + LQL+ KQK + YG Sbjct: 10 RKSRRLRVDLVGGDQAFER-------RPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + EK+FR ++EA G T NL+ LESRLD +VYRA T ARQ V H H+LV Sbjct: 62 -VMEKQFRRYYQEAVNRPGKTGENLLQILESRLDNVVYRAGLARTRRQARQLVTHGHLLV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFV 180 N + V+I SYR + D+I+V++KS LA++ + +R +P ++ V + Sbjct: 121 NNKKVDIPSYRVSQYDIIDVREKS--LATLPFQVARETQGDRPIPGWLQVVGGRLRILVH 178 Query: 181 RIPSSLK-DVPYPVIMQPNLVVEFYSR 206 ++P + +VP +Q L+VE+YS+ Sbjct: 179 QLPERAQIEVP----LQEQLIVEYYSK 201 >gi|215400724|ref|YP_002327485.1| ribosomal protein S4 [Vaucheria litorea] gi|194441174|gb|ACF70902.1| ribosomal protein S4 [Vaucheria litorea] Length = 204 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 115/208 (55%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + KI RR G NL G + + G Q++ K S + ++L KQK++ Sbjct: 1 MARYLGPRLKIIRRFG-NLPGLTSKIITKKPSGQQASNQKKLQKSSDYKIRLFEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ R EA R +G T+ L+ LE RLDTI++R PTI AARQFVNH H Sbjct: 60 NYG-LTERQLRKYVSEARRKKGSTAFYLMQLLEMRLDTIIFRLGLAPTIPAARQFVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVNHDNMVAT 178 +L+N + +NI S++C D+I +K K K ++E S R +P ++++N + A Sbjct: 119 ILINKKKINIPSFQCHPTDIITIKNK-KGTKQLVEKSLANPRFSTLPNHLTLNTKLLQAE 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I KD+ + V L+VE+Y+R Sbjct: 178 VKDIVIR-KDLSFEV--NDLLIVEYYAR 202 >gi|326803755|ref|YP_004321573.1| ribosomal protein S4 [Aerococcus urinae ACS-120-V-Col10a] gi|326650742|gb|AEA00925.1| ribosomal protein S4 [Aerococcus urinae ACS-120-V-Col10a] Length = 203 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 MS+ K RR G +L G K + R Y PG HG QRRKS Y GLQL+ KQK+ Sbjct: 1 MSRYTGPSWKKSRRYGISLSGTGKE-LARRPYAPGQHGPNQRRKSLSEY-GLQLQEKQKL 58 Query: 59 KKYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + YG ++EK+F +++ A++ + G N ++ LE RLD +VYR T ARQ V+ Sbjct: 59 RFIYG-LTEKQFHNLYNRAEKIKEGTVGTNFMTLLEQRLDNMVYRLGLASTRRQARQLVS 117 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H H+ V+G+ V+I SY + G VI V++KSK L + ++ + VP Y+ + D + Sbjct: 118 HGHITVDGKRVDIPSYIVEVGQVIGVREKSKNLQVIKDSVEGLYGHVP-YVEFDADKLEG 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R+P +D I +LVVE+Y++ Sbjct: 177 SLSRLPE--RDEMNQEI-DESLVVEYYNQ 202 >gi|168178912|ref|ZP_02613576.1| ribosomal protein S4 [Clostridium botulinum NCTC 2916] gi|182670114|gb|EDT82090.1| ribosomal protein S4 [Clostridium botulinum NCTC 2916] Length = 197 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIVYRIGFANSIRQARQIVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVN VNI SY K GDVI +K+K ++ + ++ YI ++D + Sbjct: 115 ILVNDSKVNIPSYEVKIGDVITLKEKYRKNDEFADNFLALKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KQPE--RD-EIPIDANETLVVELYSK 197 >gi|327399496|ref|YP_004340365.1| 30S ribosomal protein S4 [Hippea maritima DSM 10411] gi|327182125|gb|AEA34306.1| ribosomal protein S4 [Hippea maritima DSM 10411] Length = 208 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 99/184 (53%), Gaps = 6/184 (3%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R Y PG R+ SY GL L KQK K YG + E++FR F+EA R +G+ Sbjct: 30 KCAFERRPYPPGKSRNARRKMSSY-GLHLAEKQKAKAEYG-VLERQFRKYFEEAKRQKGE 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL+ LE RLD +VYR+ + AR+ V H H+ VNG V+I SY ++GDVI V Sbjct: 88 TGANLVVLLERRLDNVVYRSGMASSRREARRLVTHGHIRVNGHKVDIPSYLVRKGDVITV 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 K K + + R +I+V+ DN+ ATFV +P+ DV P N +VE Sbjct: 148 SDKMKAKEEFKRRFEENSRRMSASWINVDLDNVSATFVDMPTR-DDVQPP--FNENAIVE 204 Query: 203 FYSR 206 YS+ Sbjct: 205 LYSK 208 >gi|254234050|ref|ZP_04927375.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis C] gi|124599579|gb|EAY58683.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis C] Length = 201 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD ++YRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGAHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+++V+ KS A + A ER +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VE+YS+ Sbjct: 190 ----LTEQLIVEYYSK 201 >gi|229815744|ref|ZP_04446069.1| hypothetical protein COLINT_02793 [Collinsella intestinalis DSM 13280] gi|229808660|gb|EEP44437.1| hypothetical protein COLINT_02793 [Collinsella intestinalis DSM 13280] Length = 198 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S +G+QLR KQK+K YG + EK+F ++ A R G T NL++ LE+RLD + Sbjct: 35 KRRRKESEYGMQLREKQKVKFIYG-VLEKQFHHYYEHALRMDGVTGENLMTILETRLDNV 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H H VNG+ V+I SYR K GDVI V +K + L + EA Sbjct: 94 VFRLGFARTRKEARQTVRHGHFTVNGKRVDIPSYRVKAGDVIAVGEKFRDLLPIKEALIS 153 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +ER +VP ++ V+ + + + +PS +D I + L+VE YS+ Sbjct: 154 SERFEVPGWLEVDIEKLSGNVISLPS--RDQISGDINE-QLIVELYSK 198 >gi|84494745|ref|ZP_00993864.1| 30S ribosomal protein S4 [Janibacter sp. HTCC2649] gi|84384238|gb|EAQ00118.1| 30S ribosomal protein S4 [Janibacter sp. HTCC2649] Length = 202 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 23/215 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+ +L G K+ + R + PG HG+RR + Y QL+ KQK + Sbjct: 1 MARYTGPITKKSRRLRVDLVGGDKN-FDLRPFPPGQHGRRRMQEKEYL-TQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR +KEA G T N+++ LESRLD ++YRA T AARQ V H H Sbjct: 59 TYG-VMEKQFRRYYKEAANRPGKTGENILTILESRLDNVIYRAGLARTRRAARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATF 179 VNG+ V++ SYR ++ D+I V+++S + + L +R P ++ V Sbjct: 118 FEVNGKRVDVPSYRVEQYDIITVRKQSVETFPLQLARETFGDRPTPAWLQV--------- 168 Query: 180 VRIPSSLKDVPYPV--------IMQPNLVVEFYSR 206 +P SL+ + + + I+ L+VEFYS+ Sbjct: 169 --VPGSLQILIHSLPIRAQIDSILTEQLIVEFYSK 201 >gi|169630850|ref|YP_001704499.1| 30S ribosomal protein S4 [Mycobacterium abscessus ATCC 19977] gi|226699092|sp|B1MGA0|RS4_MYCA9 RecName: Full=30S ribosomal protein S4 gi|169242817|emb|CAM63845.1| 30S ribosomal protein S4 [Mycobacterium abscessus] Length = 201 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/196 (39%), Positives = 106/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G S R Y PG HG R + K S + QL+ KQK + YG + EK+FR Sbjct: 13 RRLGVDLVG-GSSAYEKRPYPPGQHG-RARIKESEYRQQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA RS G T L+ LESRLD +VYRA T ARQ V+H H VN V++ S Sbjct: 70 YYAEAVRSSGKTGEQLLQILESRLDNVVYRAGLARTRRMARQLVSHGHFTVNNVKVDVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I++K KS A + A ER +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIIDIKPKSLNTLPFEVARETAGERPIPGWLQVVGERQRILVHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VEFYS+ Sbjct: 190 ----LAEQLIVEFYSK 201 >gi|288574373|ref|ZP_06392730.1| ribosomal protein S4 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570114|gb|EFC91671.1| ribosomal protein S4 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 205 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 109/206 (52%), Gaps = 7/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 +++ + K K+ RR G N++G K RR +K S +G QL KQK++ Sbjct: 6 NRKTAPKGKMVRRFGVNVFGNTKYDRLLAKKSGANKKNRRPAKQSIYGQQLLEKQKIRFA 65 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG +SEK+ R+ + +A G HN++ LESRLD +VYR T ARQ V H H Sbjct: 66 YG-VSEKQLRAAYAKAKNQGGVAGHNMLILLESRLDNVVYRLGLCSTRPQARQLVRHGHF 124 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 +N R V+I S K GDVI V +KS+++ + E S++A P ++S+N M Sbjct: 125 TLNDRKVDIPSALVKPGDVIAVAEKSREMKVLRENSEVASAVSKPGWLSLN--GMSGKVE 182 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P I +VVE+YSR Sbjct: 183 RLPERQE---IPTIADEQIVVEYYSR 205 >gi|260583938|ref|ZP_05851686.1| 30S ribosomal protein S4 [Granulicatella elegans ATCC 700633] gi|260158564|gb|EEW93632.1| 30S ribosomal protein S4 [Granulicatella elegans ATCC 700633] Length = 203 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG +SK S +G QL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IARRPYAPGQHGPNNRSKLSEYGQQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK+A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFATLFKKAGKIKEGKHGENFMILLEQRLDNVVYRLGLASTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV VNG+ V+I S++ + GDV+ V++KS+ L ++++ S + PE+++ + + + + Sbjct: 119 HVTVNGKRVDIPSFQVQVGDVVGVREKSRNL-TIIKESLESLYGRPEFVTFDEEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L+D + +L+VE+Y++ Sbjct: 178 NRLP--LRD-ELTSDVDESLIVEYYNK 201 >gi|224178096|ref|YP_002600908.1| ribosomal protein S4 [Pyramimonas parkeae] gi|215882763|gb|ACJ71136.1| ribosomal protein S4 [Pyramimonas parkeae] Length = 226 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 119/208 (57%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSK-PSYFGLQLRAKQKMK 59 MS+ + +I RR+GE L G + ++ + PG HG +K S + ++LR KQK++ Sbjct: 25 MSRYRGPRLRIVRRLGE-LPGFTRK-LSKKENPPGQHGASLSNKKSSQYSIRLREKQKLR 82 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I+E++ + K+A RS+G + L+ LE RLD I++R PT+ AARQ V+H Sbjct: 83 YNYG-ITERQLLNYMKKARRSKGSSGEILLKLLEMRLDNIIFRLGMAPTVLAARQLVSHG 141 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA-SVLEASQLAERDVPEYISVNHDNMVAT 178 H+LVN SV+I SY C+ D+I VK SK+L + LE + + +PE+++ + Sbjct: 142 HILVNQNSVDIPSYLCRPKDIISVKASSKKLVENFLEITNID--SLPEHLTFTKSTLNG- 198 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S ++ + + LV+E+YSR Sbjct: 199 --EIKSIVQRSWISLKIDELLVIEYYSR 224 >gi|126643072|ref|YP_001086056.1| 30S ribosomal protein S4 [Acinetobacter baumannii ATCC 17978] Length = 140 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 4/141 (2%) Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ V+HR + +NGR Sbjct: 3 ERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLVSHRSITLNGR 62 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSS 185 VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H + TF P Sbjct: 63 RVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSKLEGTFKAAPDR 122 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 D+P + +L+VE YS+ Sbjct: 123 -SDLPAEI--NESLIVELYSK 140 >gi|262066971|ref|ZP_06026583.1| ribosomal protein S4 [Fusobacterium periodonticum ATCC 33693] gi|291379319|gb|EFE86837.1| ribosomal protein S4 [Fusobacterium periodonticum ATCC 33693] Length = 195 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 10/165 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAIQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GDV+ V + SK +E +LA D Sbjct: 98 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDVVSVIENSKN----VELIKLAVED 153 Query: 164 --VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 154 ATAPAWLELDKAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|291542058|emb|CBL15168.1| SSU ribosomal protein S4P [Ruminococcus bromii L2-63] Length = 200 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 9/180 (5%) Query: 29 TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL 88 T + PG +R+KS+ + +QL KQK+K YG I EK+FR+ +++A+++ G T L Sbjct: 28 TSNRNPGGKMRRKKSE---YSMQLTEKQKVKFIYG-IMEKQFRAYYEKAEKAEGKTGAVL 83 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 ++ +E RLD +++R T ARQ V+H H VNG+ VNI SY K GDVIEVK+KS+ Sbjct: 84 LTLIERRLDNVIFRLGLAATRREARQLVSHSHFTVNGKKVNIPSYLVKVGDVIEVKEKSR 143 Query: 149 QLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A + + + P+++ N + + V P +D+ +PV + +L+VE YS+ Sbjct: 144 STARFKAIAEGETSSIVTPKWLEKNENLLGGKVVAAPQR-EDIDFPV--EEHLIVELYSK 200 >gi|160932173|ref|ZP_02079564.1| hypothetical protein CLOLEP_01008 [Clostridium leptum DSM 753] gi|156868775|gb|EDO62147.1| hypothetical protein CLOLEP_01008 [Clostridium leptum DSM 753] Length = 200 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/183 (40%), Positives = 103/183 (56%), Gaps = 15/183 (8%) Query: 29 TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL 88 T + PG GQ RK K Y LQL KQK+K YG I E++FRS +++A R G NL Sbjct: 28 TTNRNPG--GQMRKKKGEY-ALQLAEKQKVKFVYG-ILERQFRSYYEKATRMPGKAGENL 83 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 + +E RLD +VYR F T ARQ VNH H VNG+ VNI SY K GDVIEV + S+ Sbjct: 84 LILVERRLDNVVYRLGFASTRRDARQLVNHGHFTVNGKRVNIPSYLVKPGDVIEVAETSR 143 Query: 149 QLASVLEASQLAERD-----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 S ++ S+L D VP ++ ++ +P+ +D+ PV + +L+VE Sbjct: 144 ---SSVKFSKLTGEDAPMVTVPRWLEREKSSLKGVVAAMPAR-EDIDLPV--EEHLIVEL 197 Query: 204 YSR 206 YS+ Sbjct: 198 YSK 200 >gi|226950856|ref|YP_002805947.1| ribosomal protein S4 [Clostridium botulinum A2 str. Kyoto] gi|226841576|gb|ACO84242.1| ribosomal protein S4 [Clostridium botulinum A2 str. Kyoto] Length = 197 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIVYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVN VNI SY K GDVI +++K ++ + ++ YI ++D + Sbjct: 115 ILVNDSKVNIPSYEVKTGDVITLREKYRKNDEFADNFLALKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KEPE--RD-EIPIDANETLVVELYSK 197 >gi|163804148|ref|ZP_02197919.1| 30S ribosomal protein S4 [Vibrio sp. AND4] gi|159172034|gb|EDP57005.1| 30S ribosomal protein S4 [Vibrio sp. AND4] Length = 143 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 5/146 (3%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T ARQ V+H+ + Sbjct: 2 YG-VLEKQFRNYYKDAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKAI 60 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFV 180 LVNG+ VN+ S++ DV+ +++K+KQ A + A ++AE R+ P +I V+ M TF Sbjct: 61 LVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKMEGTFK 120 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P D+ + Q L+VE YS+ Sbjct: 121 RMPER-SDLSADINEQ--LIVELYSK 143 >gi|299890916|gb|ADJ57415.1| 30S ribosomal protein S4 [uncultured prymnesiophyte C19847] Length = 209 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 123/216 (56%), Gaps = 19/216 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN------TRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K ++ RR+G+ L G VN + PG HG ++K + + ++L Sbjct: 1 MARYTGAKLRVTRRLGD-LPGFTSKKVNRPSDQGKSTQRPGQHGAT-QTKLTQYAIRLEE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ YG +SEK+ + K++ + +G T + L+ LE RLD IV+R PTI AARQ Sbjct: 59 KQKLRFNYG-LSEKQLMNYIKQSKKIKGATGNVLLQLLEMRLDNIVFRLGLAPTIAAARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQL-AERDVPEYISVN 171 VNH+H+LVN +I SY+C+ GD + +K + SKQL V++ +L A ++P+++ N Sbjct: 118 LVNHKHILVNNSCTSIPSYQCQPGDTLSIKDNKASKQL--VVKNLELPALSNIPQHLEFN 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 ++ A + I D + + + V+E+YSR Sbjct: 176 KKDLTAKVLGII----DREWVALKLNELFVIEYYSR 207 >gi|293363785|ref|ZP_06610526.1| ribosomal protein S4 [Mycoplasma alligatoris A21JP2] gi|292552651|gb|EFF41420.1| ribosomal protein S4 [Mycoplasma alligatoris A21JP2] Length = 199 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 11/199 (5%) Query: 10 KIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K RR+G ++ G+ + R+Y PG HG +R K S +GL L KQK+K +G +SE Sbjct: 10 KKSRRLGYSILETGKEFAKGKKRTYAPGQHGNKR-VKLSDYGLHLYEKQKVKYVFG-VSE 67 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R + +A + +G T NL+ LESRLD +VYRA F T ARQ VNH H LV+G+ Sbjct: 68 KQLRKAYVKATKLKGITGTNLLQVLESRLDNLVYRAGFAQTRRQARQLVNHNHFLVDGKK 127 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I S K G V+ +K+K+++ V +A LA + +++ + F R+P + Sbjct: 128 ADIPSMSIKLGSVVTLKEKTQKNVQVTDA--LANKPAAAWLT--RKDFTVKFDRLPERNE 183 Query: 188 DVPYPVIMQPNLVVEFYSR 206 V ++ L+VE+Y++ Sbjct: 184 ---MHVEIKDALIVEYYAK 199 >gi|239623374|ref|ZP_04666405.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522340|gb|EEQ62206.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 197 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 101/172 (58%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +G+QLR KQK K YG + EK FR+ + +A + G NL+ LE RLD Sbjct: 33 RRTNKKLSEYGMQLREKQKAKFIYG-VLEKPFRNYYAKASKMNGMVGTNLMILLECRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLE 155 +++R T RQ V+H+H+LVNG+ VNI SY+ K GDVIEV++K +++ +LE Sbjct: 92 VLFRMGLGRTRKETRQIVDHKHILVNGKPVNIPSYQVKAGDVIEVREKYKSAQRYKDILE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + R P ++ V+ +N+ T +P+ + DVP + L+VE YS+ Sbjct: 152 VT--GGRLTPAWLEVDQENLRGTVKEMPTRDEIDVP----VNEMLIVELYSK 197 >gi|237739946|ref|ZP_04570427.1| SSU ribosomal protein S4P [Fusobacterium sp. 2_1_31] gi|294782962|ref|ZP_06748288.1| ribosomal protein S4 [Fusobacterium sp. 1_1_41FAA] gi|229421963|gb|EEO37010.1| SSU ribosomal protein S4P [Fusobacterium sp. 2_1_31] gi|294481603|gb|EFG29378.1| ribosomal protein S4 [Fusobacterium sp. 1_1_41FAA] Length = 195 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 10/165 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + +QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYAIQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GDV+ V + SK +E +LA D Sbjct: 98 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDVVSVIENSKN----VELIKLAVED 153 Query: 164 V--PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 154 ATPPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|306819785|ref|ZP_07453440.1| 30S ribosomal protein S4 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552154|gb|EFM40090.1| 30S ribosomal protein S4 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 192 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 14/206 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+++ + K+ RR G N+ G PK+ G + K S +G QL KQK+K Sbjct: 1 MARQRGPRFKVARRFGVNVCGHPKALK---------RGPKPTKKMSEYGKQLLEKQKLKA 51 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY D+ EK+F ++A +S+ + LI LE RLD I YR F +I ARQ VNH H Sbjct: 52 YY-DVLEKQFAKYVEDALKSQENPGEKLIIRLEMRLDNIAYRLGFGSSIRQARQIVNHGH 110 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SY+ GD I +++KS+ + + +P Y+ + DN V Sbjct: 111 LLVNGKKVDIPSYKVSVGDTITLREKSRNTQLFKDNFAASNVTLP-YLQKDIDNYSGKVV 169 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +DV P+ + +L+VE+YS+ Sbjct: 170 SLPNR-EDV--PIEITESLIVEYYSK 192 >gi|15610594|ref|NP_217975.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis H37Rv] gi|15843053|ref|NP_338090.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis CDC1551] gi|31794634|ref|NP_857127.1| 30S ribosomal protein S4 [Mycobacterium bovis AF2122/97] gi|121639378|ref|YP_979602.1| 30S ribosomal protein S4 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663323|ref|YP_001284846.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis H37Ra] gi|148824668|ref|YP_001289422.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis F11] gi|167966775|ref|ZP_02549052.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis H37Ra] gi|215405497|ref|ZP_03417678.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis 02_1987] gi|215413372|ref|ZP_03422056.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis 94_M4241A] gi|215428965|ref|ZP_03426884.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis T92] gi|215432429|ref|ZP_03430348.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis EAS054] gi|215447795|ref|ZP_03434547.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis T85] gi|218755236|ref|ZP_03534032.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis GM 1503] gi|219559526|ref|ZP_03538602.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis T17] gi|224991874|ref|YP_002646563.1| 30S ribosomal protein S4 [Mycobacterium bovis BCG str. Tokyo 172] gi|253800503|ref|YP_003033504.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis KZN 1435] gi|254366059|ref|ZP_04982104.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis str. Haarlem] gi|254552561|ref|ZP_05143008.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188513|ref|ZP_05765987.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis CPHL_A] gi|260202641|ref|ZP_05770132.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis T46] gi|260206829|ref|ZP_05774320.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis K85] gi|289445058|ref|ZP_06434802.1| SSU ribosomal protein S4 [Mycobacterium tuberculosis T46] gi|289449162|ref|ZP_06438906.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis CPHL_A] gi|289555729|ref|ZP_06444939.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis KZN 605] gi|289571692|ref|ZP_06451919.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis T17] gi|289576194|ref|ZP_06456421.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis K85] gi|289747291|ref|ZP_06506669.1| ribosomal protein S4 [Mycobacterium tuberculosis 02_1987] gi|289752182|ref|ZP_06511560.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis T92] gi|289755591|ref|ZP_06514969.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis EAS054] gi|289759621|ref|ZP_06518999.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis T85] gi|289763640|ref|ZP_06523018.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis GM 1503] gi|297636117|ref|ZP_06953897.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis KZN 4207] gi|297733117|ref|ZP_06962235.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis KZN R506] gi|298526942|ref|ZP_07014351.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis 94_M4241A] gi|306777805|ref|ZP_07416142.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu001] gi|306782524|ref|ZP_07420861.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu002] gi|306786343|ref|ZP_07424665.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu003] gi|306790712|ref|ZP_07429034.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu004] gi|306795240|ref|ZP_07433542.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu005] gi|306799430|ref|ZP_07437732.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu006] gi|306805276|ref|ZP_07441944.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu008] gi|306809462|ref|ZP_07446130.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu007] gi|306969570|ref|ZP_07482231.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu009] gi|306973924|ref|ZP_07486585.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu010] gi|307081633|ref|ZP_07490803.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu011] gi|307086239|ref|ZP_07495352.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu012] gi|313660448|ref|ZP_07817328.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis KZN V2475] gi|6094181|sp|O06325|RS4_MYCTU RecName: Full=30S ribosomal protein S4 gi|32700063|sp|P45811|RS4_MYCBO RecName: Full=30S ribosomal protein S4 gi|152112232|sp|A1KPE4|RS4_MYCBP RecName: Full=30S ribosomal protein S4 gi|172047916|sp|A5U8D4|RS4_MYCTA RecName: Full=30S ribosomal protein S4 gi|254764600|sp|C1AHR6|RS4_MYCBT RecName: Full=30S ribosomal protein S4 gi|2104381|emb|CAB08724.1| PROBABLE 30S RIBOSOMAL PROTEIN S4 RPSD [Mycobacterium tuberculosis H37Rv] gi|13883397|gb|AAK47904.1| ribosomal protein S4 [Mycobacterium tuberculosis CDC1551] gi|31620231|emb|CAD95674.1| PROBABLE 30S RIBOSOMAL PROTEIN S4 RPSD [Mycobacterium bovis AF2122/97] gi|121495026|emb|CAL73512.1| Probable 30S ribosomal protein S4 rpsD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151572|gb|EBA43617.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis str. Haarlem] gi|148507475|gb|ABQ75284.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis H37Ra] gi|148723195|gb|ABR07820.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis F11] gi|224774989|dbj|BAH27795.1| 30S ribosomal protein S4 [Mycobacterium bovis BCG str. Tokyo 172] gi|253322006|gb|ACT26609.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis KZN 1435] gi|289417977|gb|EFD15217.1| SSU ribosomal protein S4 [Mycobacterium tuberculosis T46] gi|289422120|gb|EFD19321.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis CPHL_A] gi|289440361|gb|EFD22854.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis KZN 605] gi|289540625|gb|EFD45203.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis K85] gi|289545446|gb|EFD49094.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis T17] gi|289687819|gb|EFD55307.1| ribosomal protein S4 [Mycobacterium tuberculosis 02_1987] gi|289692769|gb|EFD60198.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis T92] gi|289696178|gb|EFD63607.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis EAS054] gi|289711146|gb|EFD75162.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis GM 1503] gi|289715185|gb|EFD79197.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis T85] gi|298496736|gb|EFI32030.1| 30S ribosomal protein S4 [Mycobacterium tuberculosis 94_M4241A] gi|308213890|gb|EFO73289.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu001] gi|308324841|gb|EFP13692.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu002] gi|308329095|gb|EFP17946.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu003] gi|308332903|gb|EFP21754.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu004] gi|308336563|gb|EFP25414.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu005] gi|308340438|gb|EFP29289.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu006] gi|308344302|gb|EFP33153.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu007] gi|308348193|gb|EFP37044.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu008] gi|308352917|gb|EFP41768.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu009] gi|308356760|gb|EFP45611.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu010] gi|308360705|gb|EFP49556.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu011] gi|308364320|gb|EFP53171.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis SUMu012] gi|323717942|gb|EGB27131.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis CDC1551A] gi|326905304|gb|EGE52237.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis W-148] gi|328460234|gb|AEB05657.1| 30S ribosomal protein S4 rpsD [Mycobacterium tuberculosis KZN 4207] Length = 201 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD ++YRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+++V+ KS A + A ER +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VE+YS+ Sbjct: 190 ----LTEQLIVEYYSK 201 >gi|227871775|ref|ZP_03990180.1| ribosomal protein S4 [Oribacterium sinus F0268] gi|227842376|gb|EEJ52601.1| ribosomal protein S4 [Oribacterium sinus F0268] Length = 197 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 9/168 (5%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 + K S +GLQLR KQK K YG + EK FR+ + +A++ G T NL+ LESRLD +++ Sbjct: 36 RRKMSEYGLQLREKQKAKFIYG-VLEKPFRNYYAKAEKLAGQTGENLMVLLESRLDNVIF 94 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ---KSKQLASVLEASQ 158 R T ARQ V HRHV VNG+ VNI SY GDVI++K+ +++ ++E + Sbjct: 95 RMGMARTRREARQVVGHRHVTVNGKIVNIPSYLVSAGDVIQIKESMRTAQRYKDIVEVTN 154 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R VP ++ ++ + + AT +P +D+ PV L+VE YS+ Sbjct: 155 --GRMVPAWLEMDAEKLSATIKSLPHR-EDIDVPV--NEMLIVELYSK 197 >gi|15896356|ref|NP_349705.1| 30S ribosomal protein S4 [Clostridium acetobutylicum ATCC 824] gi|26399600|sp|Q97EK5|RS4A_CLOAB RecName: Full=30S ribosomal protein S4 A gi|15026171|gb|AAK81045.1|AE007807_3 Ribosomal protein S4 [Clostridium acetobutylicum ATCC 824] gi|325510512|gb|ADZ22148.1| 30S ribosomal protein S4 [Clostridium acetobutylicum EA 2018] Length = 206 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 10/185 (5%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R Y PG+HGQ RK K S +GLQLR KQK K+ YG + EK+FR +K A+R +G Sbjct: 30 KCAFTRRGYAPGVHGQSRK-KISNYGLQLREKQKAKRIYG-VLEKQFRIYYKRAERIKGI 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 + NL+ LE RLD + Y+ + + ARQ V H H LVNG+ V+I SY K +V+ V Sbjct: 88 SGENLLKLLELRLDNVAYKLGYGSSRKEARQLVTHGHFLVNGKKVDIPSYTLKVNEVVSV 147 Query: 144 KQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 +KS+ + AE + +P +I N+DN A V P+ +D+ P+ + L+V Sbjct: 148 SEKSR---GTEKFKTFAENPKTLPAWIEANYDNFEAKIVAEPNR-EDIDTPI--KETLIV 201 Query: 202 EFYSR 206 E YS+ Sbjct: 202 ELYSK 206 >gi|298243942|ref|ZP_06967749.1| ribosomal protein S4 [Ktedonobacter racemifer DSM 44963] gi|297556996|gb|EFH90860.1| ribosomal protein S4 [Ktedonobacter racemifer DSM 44963] Length = 210 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 100/180 (55%), Gaps = 8/180 (4%) Query: 28 NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHN 87 NTR PG HG R K S + QLR KQ++++ YG + E++F F A R G TS N Sbjct: 38 NTR---PGQHGTSRARKESGYAKQLREKQRVRRTYG-VLERQFSKHFVAAARRPGKTSEN 93 Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 L+ LE RLD +VYR F + ARQ VNH H +VNGR +I S+ K DVI V+ + Sbjct: 94 LLQILEMRLDNLVYRLGFADSRAQARQLVNHGHFVVNGRKTDIPSFIAKPNDVIAVRDSN 153 Query: 148 KQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 K L A L+++ +P ++ ++ + M + +PS D+ P Q +VVE+Y R Sbjct: 154 KSLEYFKSRALLLSQKGIPTWLRLDVNAMSGRVLTLPSR-TDLELPFDEQ--MVVEYYQR 210 >gi|329907623|ref|ZP_08274693.1| SSU ribosomal protein S4p (S9e) [Oxalobacteraceae bacterium IMCC9480] gi|327546928|gb|EGF31837.1| SSU ribosomal protein S4p (S9e) [Oxalobacteraceae bacterium IMCC9480] Length = 139 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 87/141 (61%), Gaps = 4/141 (2%) Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++FR F EADR +G+T L+ LE RLD ++YR F T ARQ V+H+ VNG Sbjct: 2 ERQFRRYFAEADRRKGNTGETLLKLLEGRLDNVIYRMGFGSTRAEARQLVSHKAFTVNGI 61 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SY+ K GDVI V++K+K+ ++EA LAE+ +P +++V+ M TF +P Sbjct: 62 VVNIASYQVKAGDVIVVREKAKKQVRIVEALSLAEQIGMPSWVAVDAKKMEGTFKSVPDR 121 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 ++ + V +L+VE YSR Sbjct: 122 -SEIAHDV--NESLIVELYSR 139 >gi|31544739|ref|NP_853317.1| 30S ribosomal protein S4 [Mycoplasma gallisepticum str. R(low)] gi|41017821|sp|Q7NAV0|RS4_MYCGA RecName: Full=30S ribosomal protein S4 gi|31541585|gb|AAP56885.1| 30S ribosomal protein S4 [Mycoplasma gallisepticum str. R(low)] gi|284930807|gb|ADC30746.1| 30S ribosomal protein S4 [Mycoplasma gallisepticum str. R(high)] gi|284931289|gb|ADC31227.1| 30S ribosomal protein S4 [Mycoplasma gallisepticum str. F] Length = 207 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 10/210 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYG----PGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ S ++ RR+ ++ K N +S PG HG + K S +G QL+ KQ Sbjct: 1 MSRYTGSIYRKARRLNFSILESGKEFTNNKSKKGVKVPGQHGSLIRPKLSNYGEQLQEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 KM+ YG +++++FR +F + + G + NL LESRLD +V+R F PT ARQ V Sbjct: 61 KMQFMYG-LNDRQFRRLFAVSKKMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV 176 +H HVLVNG++ +I S G V+E+K ++ L V A L + V ++ VN + Sbjct: 120 SHGHVLVNGKTFDIPSALISLGSVVELKPRAHNLPLVKLA--LESKAVAPFVEVNKKTLS 177 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+VR P + P + VVE+Y R Sbjct: 178 GTYVRYPERNE---LPADVNETYVVEYYKR 204 >gi|326383231|ref|ZP_08204919.1| 30S ribosomal protein S4 [Gordonia neofelifaecis NRRL B-59395] gi|326197981|gb|EGD55167.1| 30S ribosomal protein S4 [Gordonia neofelifaecis NRRL B-59395] Length = 201 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 112/208 (53%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+ +L G ++ R Y PG HG+ R + Y LQL+ KQK + Sbjct: 1 MARYTGPATKKSRRLRVDLIGGDQA-YERRPYPPGQHGRARIKETEYL-LQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EA+R G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VMEKQFRRYYEEANRRSGKTGDVLLQILESRLDNVVYRAGLARTRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 + VNG V++ SYR + D+I+V+ KS Q A + L +R P ++ V + Sbjct: 118 LTVNGVRVDVPSYRVSQYDIIDVRPKSLQTTPFQIAKETLGDRPTPAWLQVVPSTLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 +P + +VP + L+VE+YS+ Sbjct: 178 HSLPERAQIEVP----LTEQLIVEYYSK 201 >gi|322807729|emb|CBZ05304.1| SSU ribosomal protein S4p (S9e) [Clostridium botulinum H04402 065] Length = 197 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIVYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVN VNI SY K GDVI +++K ++ + ++ YI ++D + Sbjct: 115 ILVNDSKVNIPSYEVKAGDVITLREKYRKNDEFADNFLSLKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KEPE--RD-EIPIDANETLVVELYSK 197 >gi|172040040|ref|YP_001799754.1| 30S ribosomal protein S4 [Corynebacterium urealyticum DSM 7109] gi|226697828|sp|B1VEY1|RS4_CORU7 RecName: Full=30S ribosomal protein S4 gi|171851344|emb|CAQ04320.1| 30S ribosomal protein S4 [Corynebacterium urealyticum DSM 7109] Length = 201 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/196 (35%), Positives = 111/196 (56%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G +S R Y PG G R + K S + +QL+ KQK + YG + EK+FR Sbjct: 13 RRLRVDLVGGDRS-FERRPYPPGQAG-RARIKESEYLIQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + EA+ G T NL+ LE+RLD ++YRA T ARQ V+H H VNG+ +N+ S Sbjct: 70 YYAEANAMPGKTGDNLVILLEARLDNVIYRAGLARTRRQARQLVSHGHFTVNGKKINVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 +R + D+I+V+ +S+ + EA L + +VP ++ V + ++P + D+P Sbjct: 130 FRVSQYDIIDVRDRSRSMLWFDEAQDNLVDANVPAWLQVVPSTLRILVHQLPERAQIDIP 189 Query: 191 YPVIMQPNLVVEFYSR 206 +Q L+VE+YS+ Sbjct: 190 ----LQEQLIVEYYSK 201 >gi|116515235|ref|YP_802864.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285369|sp|Q057C8|RS4_BUCCC RecName: Full=30S ribosomal protein S4 gi|58384668|gb|AAW72683.1| ribosomal protein S4 [Buchnera aphidicola (Cinara cedri)] gi|116257089|gb|ABJ90771.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 206 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M+K K K+ RR +L+ + +S N PG HG R K + S + QLR K Sbjct: 1 MAKYLGPKLKLCRRENSDLFLKSGVRTIESKCNI-DQAPGQHGSR-KLRLSEYAKQLREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG I EK+F + +K+A + +G+T NL+ LESRLD IVYR F T ARQ Sbjct: 59 QKLRRLYG-ILEKQFHNYYKKASKLKGNTGQNLLFLLESRLDNIVYRLGFGTTRLEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDN 174 +NH+ + VN + V+ S++ D I V +KSK QL + +++ P ++S+++ N Sbjct: 118 INHKSICVNNKIVSFPSFQVSIDDKISVVKKSKNQLRIKASLEIMKQKEKPSWLSIDYPN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R S++ + +L++E YS+ Sbjct: 178 MEGVFLR---SIERDDLSSDINEHLIIELYSK 206 >gi|257064663|ref|YP_003144335.1| SSU ribosomal protein S4P [Slackia heliotrinireducens DSM 20476] gi|256792316|gb|ACV22986.1| SSU ribosomal protein S4P [Slackia heliotrinireducens DSM 20476] Length = 198 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S + LQLR KQK K YG + EK+FR FK+A G T NL+ LESRLD + Sbjct: 35 QRRRKESEYALQLREKQKAKFIYG-VLEKQFRGYFKKAKAMPGITGENLMRILESRLDNV 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V+H H+ VNG+ VNI SYR + GD++ V K+K L + A Sbjct: 94 VFRLGFARTRKEARQTVSHGHIYVNGKRVNIPSYRVRPGDLVSVAPKAKDLLVIKSALVS 153 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ER VP ++ V+ + + + + +P+ + + ++ L+VE YS+ Sbjct: 154 NERVQVPAWLEVDIEKLQGSVLSLPNRDQ---IDLDIREQLIVELYSK 198 >gi|303233180|ref|ZP_07319853.1| ribosomal protein S4 [Atopobium vaginae PB189-T1-4] gi|302480765|gb|EFL43852.1| ribosomal protein S4 [Atopobium vaginae PB189-T1-4] Length = 176 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S +G QLR KQK K YG I EK+FR + +A ++ G T NL+S LE+RLD +V+R F Sbjct: 19 SEYGTQLREKQKAKFIYG-ILEKQFRGYYNKALKNEGITGDNLMSLLETRLDNVVFRLGF 77 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 T ARQ V H H+ VNG+ V+I SY+ K DVI V K+K L + E+ ++ER V Sbjct: 78 ARTRKEARQTVRHGHITVNGKRVDIPSYQVKAQDVIAVNPKAKDLLPIKESLIVSERMAV 137 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ V+ + + T ++IP ++D + + L+VE YS+ Sbjct: 138 PAWLEVDIEKLQGTVLQIP--VRD-QIDLDIDAQLIVELYSK 176 >gi|210631179|ref|ZP_03296790.1| hypothetical protein COLSTE_00675 [Collinsella stercoris DSM 13279] gi|210160146|gb|EEA91117.1| hypothetical protein COLSTE_00675 [Collinsella stercoris DSM 13279] Length = 198 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S +G+QLR KQK+K YG + EK+F ++ A R G T NL++ LE+RLD + Sbjct: 35 KRRRKESEYGMQLREKQKVKFIYG-VLEKQFHHYYEHALRMDGVTGENLMTILETRLDNV 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H H VNG+ V+I SYR K GDV+ V +K + L + EA Sbjct: 94 VFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRVKAGDVVAVGEKFRDLLPIKEALIS 153 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +ER +VP ++ V+ + + + +PS + + L+VE YS+ Sbjct: 154 SERFEVPGWLEVDIEKLSGNVISLPSREQ---ISGDINEQLIVELYSK 198 >gi|168181943|ref|ZP_02616607.1| 30S ribosomal protein S4 [Clostridium botulinum Bf] gi|182674732|gb|EDT86693.1| 30S ribosomal protein S4 [Clostridium botulinum Bf] Length = 197 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIVYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVN VNI SY K GDVI +++K ++ + ++ YI ++D + Sbjct: 115 ILVNDSKVNIPSYEVKIGDVITLREKYRKNDEFADNFLALKKFSLPYIEKDYDKFSGVLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +D P+ LVVE YS+ Sbjct: 175 KQPE--RD-EIPIDANETLVVELYSK 197 >gi|262203541|ref|YP_003274749.1| 30S ribosomal protein S4 [Gordonia bronchialis DSM 43247] gi|262086888|gb|ACY22856.1| ribosomal protein S4 [Gordonia bronchialis DSM 43247] Length = 201 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+ +L G ++ R Y PG HG+ R + Y QL+ KQK + Sbjct: 1 MARYTGPATKKSRRLRVDLIGGDQA-FERRPYPPGQHGRSRIKESEYLQ-QLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EA+R G T L+ LE+RLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLEKQFRRYYEEANRRNGKTGDELLRILETRLDNVVYRAGLARTRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 VNG V++ SYR + D+I+V+ KS Q A ++ +R VP ++ V + Sbjct: 118 FTVNGVKVDVPSYRVGQYDIIDVRPKSLQTVPFQIAKEIQGDRPVPGWLQVVPSTLRILV 177 Query: 180 VRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 +P + DVP + L+VEFYS+ Sbjct: 178 HNVPERAQIDVP----LTEQLIVEFYSK 201 >gi|324999251|ref|ZP_08120363.1| 30S ribosomal protein S4 [Pseudonocardia sp. P1] Length = 201 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 7/195 (3%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG+ R + Y LQL+ KQK + YG + EK+ R+ Sbjct: 13 RRLKTDLVGGDQA-FERRPYPPGQHGRIRIKETEYL-LQLQEKQKARFGYG-LQEKQLRA 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ VNH H LVNG+ V+I S Sbjct: 70 YYEEAHRREGKTGDELLQILESRLDNVVYRAGLARTRRMARQLVNHGHFLVNGKKVDIPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 ++ + D+I+V++KS+ + A + +R VP ++ V + ++P + + Sbjct: 130 FKVSKYDIIDVREKSRNTDPFVIAKETQGDRPVPAWLQVVPSTLRILVHQLPERAQ-IDT 188 Query: 192 PVIMQPNLVVEFYSR 206 V Q L+VE+YS+ Sbjct: 189 QVTEQ--LIVEYYSK 201 >gi|218249063|ref|YP_002374434.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 8801] gi|257062150|ref|YP_003140038.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 8802] gi|226697833|sp|B7JVE5|RS4_CYAP8 RecName: Full=30S ribosomal protein S4 gi|218169541|gb|ACK68278.1| ribosomal protein S4 [Cyanothece sp. PCC 8801] gi|256592316|gb|ACV03203.1| ribosomal protein S4 [Cyanothece sp. PCC 8802] Length = 202 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 120/209 (57%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKNP--RRAYPPGQHGQARK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E + K+A R+ G T L+ LE RLD V+R TI AARQ VNH H Sbjct: 58 NYG-VTEGQLIRYVKKARRATGSTGQKLLELLEMRLDNTVFRLGMAGTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 + VNG+ V+I SY+C+ G+VI V+ ++S++L ++ LA ++P ++ + + + Sbjct: 117 ITVNGKVVDIPSYQCRPGEVIAVRNQERSRRLVEANMQYPGLA--NLPSHLEFDKNTLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + ++ + + LVVE+YSR Sbjct: 175 ---KVNAVIEREWIALQINELLVVEYYSR 200 >gi|144143|gb|AAC05398.1| ribosomal protein S4 [Buchnera aphidicola] gi|448400|prf||1917188A ribosomal protein S4 Length = 206 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ + PG HG R K + S + QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGFRSIDSKCKLEHPPGQHGVR-KPRLSDYAYQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR +K+A RS+G+T NL+ LE RLD +VYR F T +RQ + Sbjct: 60 KVRRLYG-VLERQFRIYYKKASRSKGNTGENLLQLLERRLDNVVYRMGFGCTRSESRQLI 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ + VN VNI SY+ D I V+ KSK + + A +L E R+ +I V+ M Sbjct: 119 SHKSIKVNNNIVNIASYQISPNDRISVRDKSKNQSRIKAALELTEQREKLMWIEVDVTKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P D+ + +L+VE YS+ Sbjct: 179 EGIFKRFPER-SDLSAEI--NEHLIVELYSK 206 >gi|15894872|ref|NP_348221.1| 30S ribosomal protein S4 [Clostridium acetobutylicum ATCC 824] gi|26399602|sp|Q97IP6|RS4C_CLOAB RecName: Full=Putative 30S ribosomal protein S4 C gi|15024549|gb|AAK79561.1|AE007669_4 Ribosomal protein S4 [Clostridium acetobutylicum ATCC 824] gi|325509010|gb|ADZ20646.1| 30S ribosomal protein S4 [Clostridium acetobutylicum EA 2018] Length = 196 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K+ RR+G N++G PK+ + RK K S +G+ L KQK+K Sbjct: 1 MATMREPRFKLSRRLGVNIYGHPKAMKRFET------TNTRKKKISDYGMHLIEKQKLKA 54 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K A +++ + +L+ LE RLD +VYR F +I ARQ V+H Sbjct: 55 YYG-VLEKQFSRYVKAAMKNKEASGSSLLKILECRLDNVVYRIGFANSIRQARQMVSHGL 113 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG+ ++I SY + GDV+ +K+K +Q L+ +VP YI N D Sbjct: 114 ILVNGKKLDIPSYEVQVGDVVSLKEKHRQNEMFSNNFMNLSTFNVP-YIEKNPDEFSGKL 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P ++ ++P V V+EFYS+ Sbjct: 173 LRLP-NIDEIPIKV--NEVAVIEFYSK 196 >gi|256544532|ref|ZP_05471905.1| 30S ribosomal protein S4 [Anaerococcus vaginalis ATCC 51170] gi|256399857|gb|EEU13461.1| 30S ribosomal protein S4 [Anaerococcus vaginalis ATCC 51170] Length = 197 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 11/171 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 QRRK S +G+Q R KQK K YG +SEK+FRS +++A + +G T NLI E RLD Sbjct: 35 QRRK--LSEYGMQQREKQKAKFIYG-VSEKQFRSYYEKASKMQGQTGENLIILCERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLE 155 I +R+ T ARQ V H H+LVNG+SV+I S EGDVIEVK+KS+ ++ E Sbjct: 92 IAFRSGLARTRREARQIVTHGHLLVNGKSVDIPSILVNEGDVIEVKEKSRSSQLFKAIKE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +Q V ++ + +N+ P+ +D+ PV + ++VEFYS+ Sbjct: 152 TNQ--SFGVVSWLDSDLENLKVKVTNFPTR-EDIDIPV--EERMIVEFYSK 197 >gi|113170431|ref|YP_717223.1| Rps4 [Ostreococcus tauri] gi|122228948|sp|Q0P3N2|RR4_OSTTA RecName: Full=30S ribosomal protein S4, chloroplastic gi|112806838|emb|CAL36345.1| Rps4 [Ostreococcus tauri] Length = 197 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 115/207 (55%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ + KI RR+GE K P R+Y G HG +K S + ++L+ KQK++ Sbjct: 1 MARYRGPRVKIVRRLGELPGLTTKIP--NRNYPAGQHGPSSGMTKMSQYRVRLQEKQKLR 58 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+ S + A R +G T L+ LE RLD +VYR F PTI AARQ+V+H Sbjct: 59 YNYG-VSEKQLLSYVRRARRMKGPTGELLLQMLEMRLDAVVYRLGFAPTIRAARQYVSHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 V VNG++V I SY+C G+VI+ A ++E ++ VP ++SV+ +N Sbjct: 118 LVTVNGQAVTIPSYQCSVGEVIKSNS-----APIVEHAKTFGGVVPSHLSVDKNNATG-- 170 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ + + L++EFYSR Sbjct: 171 -KVERNVTRSQIGLTVNELLIIEFYSR 196 >gi|41410330|ref|NP_963166.1| 30S ribosomal protein S4 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464319|ref|YP_883534.1| 30S ribosomal protein S4 [Mycobacterium avium 104] gi|254776831|ref|ZP_05218347.1| 30S ribosomal protein S4 [Mycobacterium avium subsp. avium ATCC 25291] gi|61215639|sp|Q73S44|RS4_MYCPA RecName: Full=30S ribosomal protein S4 gi|152112231|sp|A0QKU6|RS4_MYCA1 RecName: Full=30S ribosomal protein S4 gi|41399164|gb|AAS06782.1| RpsD [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165606|gb|ABK66503.1| ribosomal protein S4 [Mycobacterium avium 104] Length = 201 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 108/196 (55%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ V H H VNG V++ S Sbjct: 70 YYEEAVRQPGKTGEELLRILESRLDNVVYRAGLARTRRMARQLVTHGHFTVNGVRVDVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+++S A + A +R VP ++ V + ++P + DVP Sbjct: 130 YRVSQYDIIDVREQSLNSVPFQIARETAGDRPVPSWLQVVGERQRILIHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VEFYS+ Sbjct: 190 ----LTEQLIVEFYSK 201 >gi|240167782|ref|ZP_04746441.1| 30S ribosomal protein S4 [Mycobacterium kansasii ATCC 12478] Length = 201 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLRILESRLDNVVYRAGLARTRRMARQLVSHGHFSVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+ S A + A +R +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIIDVRDTSLNTVPFQIARETAGDRPIPSWLQVVGERQRILIHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VEFYS+ Sbjct: 190 ----LTEQLIVEFYSK 201 >gi|254302865|ref|ZP_04970223.1| ribosomal protein S4 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323057|gb|EDK88307.1| ribosomal protein S4 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 195 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 96/165 (58%), Gaps = 10/165 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYATQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GDV+ V + SK +E +LA D Sbjct: 98 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDVVSVIENSKN----VELIKLAVED 153 Query: 164 V--PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 154 ATPPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|71894490|ref|YP_278598.1| 30S ribosomal protein S4 [Mycoplasma synoviae 53] gi|90101696|sp|Q4A5T4|RS4_MYCS5 RecName: Full=30S ribosomal protein S4 gi|71851278|gb|AAZ43887.1| 30S ribosomal protein S4 [Mycoplasma synoviae 53] Length = 199 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ K RR G ++ K S R+Y PG HG +R K S +GL L KQK+ Sbjct: 1 MSRYTGPLFKKSRRFGYSILETNKEFSKGRKRTYAPGQHGNKR-VKLSDYGLHLYEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K +G +SEK+ +K+A +S+ T L+ LESRLD +VYRA F T ARQ VNH Sbjct: 60 KLVFG-VSEKQLLKTYKKAVKSKEITGTVLLQLLESRLDNLVYRAGFATTRRQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H ++G+ NI S + K G + +K+ S++L V EA ++ P V + T Sbjct: 119 GHFTIDGKKANIPSMQIKTGTTVVLKETSRKLKLVQEALEMQ----PASAWVTRKDFQFT 174 Query: 179 FVRIPSSL---KDVPYPVIMQPNLVVEFYSR 206 F R+P KD+ + LVVEFY++ Sbjct: 175 FYRVPERTEMHKDI------KEALVVEFYAK 199 >gi|210624083|ref|ZP_03294183.1| hypothetical protein CLOHIR_02139 [Clostridium hiranonis DSM 13275] gi|210153216|gb|EEA84222.1| hypothetical protein CLOHIR_02139 [Clostridium hiranonis DSM 13275] Length = 198 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 9/206 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K RR+G N+ G PK+ ++ G R K S +G QL KQ++K Sbjct: 1 MAKMMGPRFKQCRRLGLNVCGHPKA-MDRAERGTS----RADKKLSPYGTQLLEKQRLKA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F + +A++S+ T LI LE RLD IVYR +I ARQ V H H Sbjct: 56 YYG-VLEKQFANYVHKAEKSKESTGTVLIQLLECRLDNIVYRLGLASSIRQARQMVVHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+ S+ GDV+ +++KS+ A E + +E + YI N + T + Sbjct: 115 ILVNGKKVDRPSFGLNVGDVVSLREKSQSNAMFKENFENSELNTLPYIEKNMEKFSGTLI 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P + P+ + LVVE+YS+ Sbjct: 175 KRPERNE---IPIEINEILVVEYYSK 197 >gi|237796865|ref|YP_002864417.1| 30S ribosomal protein S4 [Clostridium botulinum Ba4 str. 657] gi|229261841|gb|ACQ52874.1| 30S ribosomal protein S4 [Clostridium botulinum Ba4 str. 657] Length = 197 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 15/209 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N++G PK+ R K S +G QL KQK++ Sbjct: 1 MAKIRDPRFKLSRRLGVNIYGHPKAMKRATR-----ENSREGKKLSNYGKQLLEKQKIRS 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F K+A +S+ T L+ LE RLD IVYR F +I ARQ VNH H Sbjct: 56 YYG-VLEKQFLRYVKKAMKSKERTGDVLLRSLECRLDNIVYRIGFANSIRQARQMVNHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQ---KSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 +LVN VNI SY K GDVI +++ K+ + A+ A L + +P YI ++D Sbjct: 115 ILVNDSKVNIPSYEVKIGDVITLREKYRKNDEFANNFLA--LKKFSLP-YIEKDYDKFSG 171 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P +D P+ LVVE YS+ Sbjct: 172 VLIKQPE--RD-EIPIDANETLVVELYSK 197 >gi|162456220|ref|YP_001618587.1| 30S ribosomal protein S4 [Sorangium cellulosum 'So ce 56'] gi|161166802|emb|CAN98107.1| 30S ribosomal protein S4 [Sorangium cellulosum 'So ce 56'] Length = 209 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 104/184 (56%), Gaps = 5/184 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K R Y PG HGQ R K S + ++LR KQK+++ YG + E++F F+EA+R +G Sbjct: 30 KCAYTRRPYPPGQHGQGR-IKLSEYAVRLREKQKVRRIYG-VLERQFSGYFQEANRRKGR 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T ++ LE RLD +V+R F + ARQ V H HV VNG+ ++I SY + GD +E+ Sbjct: 88 TGEEMLGLLERRLDNVVHRMGFGSSRAEARQLVRHGHVHVNGKRLDIPSYVVRAGDRVEL 147 Query: 144 KQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + +++ SVL + A+ R V +I V+ P +D+ P I + LVVE Sbjct: 148 TEGARKFKSVLASIGGADKRPVASWIDVDRAAFTGAIKGAPIR-EDLNEPEIRE-QLVVE 205 Query: 203 FYSR 206 +YSR Sbjct: 206 YYSR 209 >gi|220906440|ref|YP_002481751.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 7425] gi|254764583|sp|B8HXV1|RS4_CYAP4 RecName: Full=30S ribosomal protein S4 gi|219863051|gb|ACL43390.1| ribosomal protein S4 [Cyanothece sp. PCC 7425] Length = 204 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 127/212 (59%), Gaps = 16/212 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR-SYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M++ + ++ RR+G+ L G + V +R +Y PG HGQ RK + S + ++L KQK++ Sbjct: 1 MARYRGPRLRVIRRLGD-LPGLTRKAVPSRRAYPPGQHGQARKKR-SEYAMRLEEKQKLR 58 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++ + A R G T L+ LE RLD I++R PTI AARQ VNH Sbjct: 59 FNYG-LTERQLVRYVRRARRVSGSTGLALLQLLEMRLDNIIFRLGMAPTIPAARQLVNHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHDNMV 176 HV VNGR V+I SY+C+ G+ I ++ K S++LA L+ LA ++P ++ ++ + ++ Sbjct: 118 HVTVNGRVVSIPSYQCRPGNEIGIRNKENSRRLAEENLKFPGLA--NLPTHLELDKNKLM 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 A +S+ + + V +Q N LVVE+YSR Sbjct: 176 AKV----NSVVEREW-VALQVNELLVVEYYSR 202 >gi|34763719|ref|ZP_00144640.1| SSU ribosomal protein S4P [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886498|gb|EAA23752.1| SSU ribosomal protein S4P [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 187 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 10/165 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 31 KPTEYATQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GD++ V + SK +E +LA D Sbjct: 90 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDIVSVIENSKN----VELIKLAVED 145 Query: 164 V--PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 146 ATPPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 187 >gi|212550427|ref|YP_002308744.1| 30S ribosomal protein S4 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226697799|sp|B6YQ61|RS4_AZOPC RecName: Full=30S ribosomal protein S4 gi|212548665|dbj|BAG83333.1| 30S ribosomal protein S4 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 197 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 4/159 (2%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +G+QLR KQK K YG + E +FR F++A RSRG T L+ LESRLD +VYR Sbjct: 43 YGIQLREKQKAKYIYG-VLENQFRGFFEKASRSRGITGVVLLQLLESRLDNLVYRMGLAK 101 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 T ARQ V+H+H+ ++ VNI SY K G +I V++++K L +L+ A + + Sbjct: 102 TRAEARQLVSHKHITIDNNVVNIPSYLVKPGQIIGVRERAKSLEIILDNLIRANHNKYSW 161 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + +M A ++ IP + D+P + + L+VE YS+ Sbjct: 162 IEYDKSSMSARYLYIPERM-DIPENI--KEQLIVELYSK 197 >gi|139438877|ref|ZP_01772337.1| Hypothetical protein COLAER_01341 [Collinsella aerofaciens ATCC 25986] gi|133775588|gb|EBA39408.1| Hypothetical protein COLAER_01341 [Collinsella aerofaciens ATCC 25986] Length = 198 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S +G+QLR KQK+K YG + EK+F F +A + G T NL+ LESRLD + Sbjct: 35 KRRRKESEYGMQLREKQKVKFIYG-VLEKQFHGYFNKARKMNGVTGENLMIILESRLDNV 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H H VNG+ V+I SYR K GDV+ V +K + L + EA Sbjct: 94 VFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRVKAGDVVAVGEKFRDLLPIKEALIS 153 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +ER +VP ++ V+ + + + +P+ + + + Q L+VE YS+ Sbjct: 154 SERFEVPGWLEVDIEKLSGNVLALPTR-EQISGDINEQ--LIVELYSK 198 >gi|237742279|ref|ZP_04572760.1| SSU ribosomal protein S4P [Fusobacterium sp. 4_1_13] gi|256845558|ref|ZP_05551016.1| ribosomal protein S4 [Fusobacterium sp. 3_1_36A2] gi|294785153|ref|ZP_06750441.1| ribosomal protein S4 [Fusobacterium sp. 3_1_27] gi|229429927|gb|EEO40139.1| SSU ribosomal protein S4P [Fusobacterium sp. 4_1_13] gi|256719117|gb|EEU32672.1| ribosomal protein S4 [Fusobacterium sp. 3_1_36A2] gi|294486867|gb|EFG34229.1| ribosomal protein S4 [Fusobacterium sp. 3_1_27] Length = 195 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 10/165 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYATQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GD++ V + SK +E +LA D Sbjct: 98 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDIVSVIENSKN----VELIKLAVED 153 Query: 164 V--PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 154 ATPPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|11497530|ref|NP_054938.1| ribosomal protein S4 [Spinacia oleracea] gi|133959|sp|P13788|RR4_SPIOL RecName: Full=30S ribosomal protein S4, chloroplastic gi|188036205|pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. gi|7636111|emb|CAB88731.1| ribosomal protein S4 [Spinacia oleracea] gi|225464|prf||1303355A ribosomal protein S4 Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 120/216 (55%), Gaps = 27/216 (12%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GSDLRNQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN---H 172 NHRH+LVNGR V+I SYRCK D I + + K +A + + L+ R ++P+++++N + Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELPKHLTLNPFPY 171 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +V + D + V ++ N LVVE+YSR Sbjct: 172 KGLVNQII-------DSKW-VGLKINELLVVEYYSR 199 >gi|254819220|ref|ZP_05224221.1| 30S ribosomal protein S4 [Mycobacterium intracellulare ATCC 13950] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLRILESRLDNVVYRAGLARTRRMARQLVSHGHFSVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+ S A + A +R +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIIDVRDSSLNTVPFQIARETAGDRPIPSWLQVVGERQRILVHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VEFYS+ Sbjct: 190 ----LTEQLIVEFYSK 201 >gi|309390250|gb|ADO78130.1| SSU ribosomal protein S4P [Halanaerobium praevalens DSM 2228] Length = 198 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 116/208 (55%), Gaps = 13/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+++ + + K RR+G N++G PK+ R+ G R K S +G QL KQ+++ Sbjct: 1 MARKRNPRFKESRRLGLNIYGHPKAM--KRADGTFNRANR---KLSNYGQQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + E KF KEA + G NLI LE RLD +VYRA F +I ARQ V H H Sbjct: 56 YYG-LMENKFSRYVKEAVKENGVAGDNLIKSLEKRLDNLVYRAGFARSIRQARQMVVHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP--EYISVNHDNMVAT 178 +LVNG+ ++I SY K GD I ++ K ++ + L +R + EY+ ++DN A Sbjct: 115 ILVNGKKIDIPSYAIKIGDQISLRNKYRK--NNLFRENFLDRHLSEFEYLERDYDNFSA- 171 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + ++ P+ + LV+EFYSR Sbjct: 172 --KLKAEIEIDEIPIEINDQLVIEFYSR 197 >gi|19704619|ref|NP_604181.1| 30S ribosomal protein S4 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329034|ref|ZP_06871540.1| 30S ribosomal protein S4 [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|26399398|sp|Q8RE43|RS4_FUSNN RecName: Full=30S ribosomal protein S4 gi|19714919|gb|AAL95480.1| SSU ribosomal protein S4P [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153838|gb|EFG94650.1| 30S ribosomal protein S4 [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 195 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 96/165 (58%), Gaps = 10/165 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYATQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GD++ V + SK +E +LA D Sbjct: 98 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDIVSVIENSKN----VELIKLAVED 153 Query: 164 V--PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 154 ATPPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|187251795|ref|YP_001876277.1| RNA-binding S4 domain-containing protein [Elusimicrobium minutum Pei191] gi|226699062|sp|B2KEJ4|RS4_ELUMP RecName: Full=30S ribosomal protein S4 gi|186971955|gb|ACC98940.1| RNA-binding S4 domain protein [Elusimicrobium minutum Pei191] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 110/208 (52%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT-RSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS + + R+ G H R+K K S FG QL KQK K Sbjct: 1 MARYIGPKTKIARKFGEPIFGPDKSLIKSERAAGNNKHAPRKK-KMSVFGTQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F ++F +A G T L+ LE RLD IVYR T AARQ V HR Sbjct: 60 YTYG-LLEKQFSNLFTKAHSLPGVTGEVLMQLLECRLDNIVYRMGLARTRAAARQLVTHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV-AT 178 H+ V+G V SY K G VI V + SK L S+ E + L D +Y + V A Sbjct: 119 HITVDGEIVKTPSYSVKPGQVISVTEGSKSL-SMFEVN-LKGYDHAKYSWIEWKEPVSAK 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VRIP + P + L+VE YS+ Sbjct: 177 YVRIPERAE---IPENINEQLIVEHYSK 201 >gi|15828060|ref|NP_302323.1| 30S ribosomal protein S4 [Mycobacterium leprae TN] gi|221230537|ref|YP_002503953.1| 30S ribosomal protein S4 [Mycobacterium leprae Br4923] gi|7388198|sp|Q9X799|RS4_MYCLE RecName: Full=30S ribosomal protein S4 gi|254764601|sp|B8ZSH7|RS4_MYCLB RecName: Full=30S ribosomal protein S4 gi|4539113|emb|CAB39834.1| putative 30S ribosomal protein S4 [Mycobacterium leprae] gi|13093613|emb|CAC30913.1| 30S ribosomal protein S4 [Mycobacterium leprae] gi|219933644|emb|CAR72055.1| 30S ribosomal protein S4 [Mycobacterium leprae Br4923] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/195 (36%), Positives = 111/195 (56%), Gaps = 7/195 (3%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRIDLVGGDQA-FEKRPYPPGQHG-RARIKESEYLLQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD ++YRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFSVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YR + D+I+++ KS A + + +R +P ++ V ++ ++P ++ + Sbjct: 130 YRVSQYDIIDIRDKSLDTVPFQIARETVGDRPIPSWLQVVGEHQRILIHQLPERVQ-IEV 188 Query: 192 PVIMQPNLVVEFYSR 206 P+I Q L+VE+YS+ Sbjct: 189 PLIEQ--LIVEYYSK 201 >gi|296168684|ref|ZP_06850433.1| 30S ribosomal protein S4 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896593|gb|EFG76234.1| 30S ribosomal protein S4 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG+ R + Y LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHGRARIKESEYL-LQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLRILESRLDNVVYRAGLARTRRMARQLVSHGHFSVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+ S A + A +R +P ++ V + ++P + DVP Sbjct: 130 YRVSQYDIIDVRDGSLNTVPFQIARETAGDRPIPSWLQVVGERQRILIHQLPERAQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VEFYS+ Sbjct: 190 ----LAEQLIVEFYSK 201 >gi|145596878|ref|YP_001161175.1| 30S ribosomal protein S4 [Salinispora tropica CNB-440] gi|145306215|gb|ABP56797.1| SSU ribosomal protein S4P [Salinispora tropica CNB-440] Length = 202 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 97/180 (53%), Gaps = 9/180 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R + PG HG+ RKS Y ++L KQ++K Y ++E + R F R T LI Sbjct: 29 RPFPPGQHGRSRKSTSDY-KIRLLEKQRLKAQY-HVNEGQLRRAFTRVARLESKTGEALI 86 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE+RLD +V R+ TI+ ARQ V HRH+ VNGR V+ S R + GDVI V S+ Sbjct: 87 VDLETRLDALVLRSGLARTIYQARQTVTHRHITVNGRRVDRPSARLRPGDVIAVATGSRT 146 Query: 150 LASVL---EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A L + AER P Y++VN ++ +R+P + PV Q LVVE+YSR Sbjct: 147 KAPFLVAAAGAHAAERSAP-YLAVNLADLTVRLIRLPLRSE---VPVTCQEQLVVEYYSR 202 >gi|260780677|ref|YP_003227080.1| 30S ribosomal protein S4 [Bryopsis hypnoides] gi|260176755|gb|ACX33764.1| 30S ribosomal protein S4 [Bryopsis hypnoides] Length = 198 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 21/212 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K KI RR+G + S ++ + PG HG R+ +KPS + ++L KQK++ Sbjct: 1 MSRYRGPKLKIIRRLG--VLPGLTSKISNKKNPPGQHG-RQNTKPSQYAIRLLEKQKLRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ S K+A ++ T+ L+ LE RLD I+YR F TI + RQ + H+H Sbjct: 58 NYG-VSEKQLFSYLKKARKNSRSTAQVLLELLEMRLDNILYRLGFAKTIHSGRQLITHQH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 + VN + V I SY+CK D+IE SK ++ L D +P ++S+ + A Sbjct: 117 IRVNQKKVTIPSYQCKINDIIEFAPNSK-----IDKKNLMNLDLSKIPSFLSIEMNKTSA 171 Query: 178 TFVR-IPSSLKDVPYPVIMQPN--LVVEFYSR 206 IP S V+M N LV+E+YS+ Sbjct: 172 QIKNIIPRS------EVLMDLNELLVIEYYSK 197 >gi|227501160|ref|ZP_03931209.1| ribosomal protein S4 [Anaerococcus tetradius ATCC 35098] gi|227216745|gb|EEI82146.1| ribosomal protein S4 [Anaerococcus tetradius ATCC 35098] Length = 197 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R+SK S +G+Q R KQK K YG +SEK+FR ++ A + +G T LI E RLD + Sbjct: 35 RRSKLSEYGMQQREKQKAKFIYG-VSEKQFRGYYEAASKMKGQTGEELIILCERRLDNVA 93 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEAS 157 +R+ T ARQ V H H+ VNG V+I SY+ EGDVIEV++KS+ ++ E + Sbjct: 94 FRSGLARTRREARQIVTHGHLTVNGVQVDIPSYKVSEGDVIEVREKSRSNSLFKAIKETN 153 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A V E+++ + +N+ R P+ +D+ PV + ++VEFYS+ Sbjct: 154 --ATFGVVEWLNSDIENLKVIVDRFPTR-EDIDIPV--EERMIVEFYSK 197 >gi|307244571|ref|ZP_07526676.1| ribosomal protein S4 [Peptostreptococcus stomatis DSM 17678] gi|306492098|gb|EFM64146.1| ribosomal protein S4 [Peptostreptococcus stomatis DSM 17678] Length = 201 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/202 (35%), Positives = 111/202 (54%), Gaps = 15/202 (7%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K+ RR+G N+ G PK+ G G +K P +G QL KQ+++ YYG +SE Sbjct: 9 KFKLSRRLGLNVCGHPKA---MNRAGKGTARSDKKLTP--YGQQLLEKQRLRAYYG-VSE 62 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ R K+A +++ T +I+ LE RLD +VYR +I ARQ V+H ++ VNGR Sbjct: 63 KQMRIYMKKAQKAKMTTGTAVITTLECRLDNLVYRMGLANSIRQARQMVSHGNIHVNGRK 122 Query: 128 VNIGSYRCKEGDVIEVKQK---SKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 V+I SY GD I +++K ++ + EA+ L+E Y++ + N A R+P Sbjct: 123 VDIPSYIVSVGDEISLREKYRTNELFKANFEAAALSEYP---YLTKDQANFSAVLTRLPE 179 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + P+ + LVVEFYS+ Sbjct: 180 REE---VPIEINDALVVEFYSK 198 >gi|183981109|ref|YP_001849400.1| 30S ribosomal protein S4, RpsD [Mycobacterium marinum M] gi|226699093|sp|B2HCX3|RS4_MYCMM RecName: Full=30S ribosomal protein S4 gi|183174435|gb|ACC39545.1| 30S ribosomal protein S4, RpsD [Mycobacterium marinum M] Length = 201 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 107/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G +S R Y PG HG R + K S + QL+ KQK + YG + EK+FR Sbjct: 13 RRLGTDLVGGDQS-FEKRPYPPGQHG-RARIKDSEYRQQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRHSGKTGEELLKILESRLDNVVYRAGLARTRRMARQLVSHGHFSVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+ S A + A +R +P ++ V + ++P + +VP Sbjct: 130 YRVSQYDIIDVRDNSLNTVPFQIARETAGDRPIPSWLQVVGERQRILIHQLPERAQIEVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VE+YS+ Sbjct: 190 ----LTEQLIVEYYSK 201 >gi|295112126|emb|CBL28876.1| SSU ribosomal protein S4P [Synergistetes bacterium SGP1] Length = 198 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 108/207 (52%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ R + K+ R +G N+ G PK+ + P GQ K S + LQL KQK+K Sbjct: 1 MATRREPRFKLSRHLGVNVCGHPKAMKRVDTKKPARGGQ----KVSQYALQLMEKQKIKA 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I E++F FK A +S T L+ LE RLD +VYR F +I ARQ V+H H Sbjct: 57 YYG-ILERQFARYFKIAKKSTEMTGVALLKNLECRLDNLVYRIGFARSIRQARQMVSHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +L+NG V+I S K DVI +K+KS+ + Q LA VP Y+ + + A Sbjct: 116 ILLNGVKVDIPSCNVKVNDVISLKEKSRTNETFQNNFQGLASFSVP-YLEKDKNQFSAKL 174 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R P + P+ + L VE YS+ Sbjct: 175 IREPMREE---LPIEVNEILAVELYSK 198 >gi|167957551|ref|ZP_02544625.1| ribosomal protein S4 [candidate division TM7 single-cell isolate TM7c] Length = 205 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR G L + + +S PG H R+ KPS + QLR KQK+++ Sbjct: 1 MARDTSPIVKQSRREGYALHPKAHKIMVRKSGIPGEHAHGRQGKPSLYLTQLREKQKVRR 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F + KEA R +G NL+ LE RLD VYRA F + AARQ V+H H Sbjct: 61 TYG-LLEKQFSRLMKEATRKKGLAGENLLQLLERRLDNAVYRAGFASSRRAARQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++NGR V+I S R K GD I V+ KS + + + +S ++ Sbjct: 120 FILNGRRVDIPSIRLKAGDEISVRPKSTKSGYFTHIDDIVKNSNQTALSWMKSDVKGLKF 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + K + L+VE+YSR Sbjct: 180 SITGNPKREEAEPDINEQLIVEYYSR 205 >gi|296394891|ref|YP_003659775.1| 30S ribosomal protein S4 [Segniliparus rotundus DSM 44985] gi|296182038|gb|ADG98944.1| ribosomal protein S4 [Segniliparus rotundus DSM 44985] Length = 201 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G K+ RSY PG HG R + K S + QL+ KQK + YG + E++F++ Sbjct: 13 RRLRVDLVGGDKA-FERRSYPPGQHG-RSRIKESEYLTQLQEKQKARFTYG-VMERQFQN 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T NL+ LE+RLD ++YRA T ARQ V H H LVN + V++ S Sbjct: 70 YYREAHRRPGKTGENLLRILETRLDNVIYRAGLARTRRHARQLVTHGHFLVNQKRVDVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQ--LAERDVPEYISVNHDNMVATFVRIPSSLKDVP 190 YR + D+I+V+++S A E ++ +R VP ++ V ++ FV + + Sbjct: 130 YRVSQYDIIDVREQSAH-ADPFEIAREYYGDRPVPGWLQVVEGSL-RIFVHAEPVREQID 187 Query: 191 YPVIMQPNLVVEFYSR 206 P +Q L+VEFYS+ Sbjct: 188 VP--LQEQLIVEFYSK 201 >gi|237744174|ref|ZP_04574655.1| SSU ribosomal protein S4P [Fusobacterium sp. 7_1] gi|256027711|ref|ZP_05441545.1| 30S ribosomal protein S4 [Fusobacterium sp. D11] gi|260494240|ref|ZP_05814371.1| ribosomal protein S4 [Fusobacterium sp. 3_1_33] gi|289765670|ref|ZP_06525048.1| SSU ribosomal protein S4P [Fusobacterium sp. D11] gi|229431403|gb|EEO41615.1| SSU ribosomal protein S4P [Fusobacterium sp. 7_1] gi|260198386|gb|EEW95902.1| ribosomal protein S4 [Fusobacterium sp. 3_1_33] gi|289717225|gb|EFD81237.1| SSU ribosomal protein S4P [Fusobacterium sp. D11] Length = 195 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP+ + QLR KQK K Y ++ EK+FR I++EA R G T LI +LE RL+ +VYR Sbjct: 39 KPTEYATQLREKQKAKFIY-NVMEKQFRKIYEEAARKLGVTGLTLIEYLERRLENVVYRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 F T ARQ V+H H+ VNGR VNI S+R K GD++ V + SK + L S + + Sbjct: 98 GFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDIVSVIENSKNVE--LIKSAVEDAT 155 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ ++ P+ D+ + + +L+VEFYSR Sbjct: 156 PPAWLELDRAAFSGKVLQNPTK-DDLDFD--LNESLIVEFYSR 195 >gi|293977953|ref|YP_003543383.1| 30S ribosomal protein S4P [Candidatus Sulcia muelleri DMIN] gi|292667884|gb|ADE35519.1| SSU ribosomal protein S4P [Candidatus Sulcia muelleri DMIN] Length = 196 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 108/208 (51%), Gaps = 14/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQKM 58 M++ K KI R+ GE ++G + Y PG H R K +++ QL KQK+ Sbjct: 1 MARYIGPKTKISRKFGELIYGNTNKSFEKKKYPPGQHANSSSRNIKKTFYSTQLLEKQKI 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F +F +A + +G L+ ESRLD IVYR + ARQ V+H Sbjct: 61 KYTYG-ILERQFLKMFYKASKKKGIKGEILLQLCESRLDNIVYRLNLSHSRPEARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RH+ VNG+ VNI S+ K GD I +K+K K + L S +++S +++ M+ Sbjct: 120 RHITVNGKIVNIPSFNLKPGDKISLKEKHKANKNKLLGS--------DWLSWDNEKMIGI 171 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F IP+ + + L+VE YS+ Sbjct: 172 FKYIPNRNQITEN---INEKLIVELYSK 196 >gi|182420375|ref|ZP_02951597.1| ribosomal protein S4 [Clostridium butyricum 5521] gi|237668617|ref|ZP_04528601.1| ribosomal protein S4 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375741|gb|EDT73339.1| ribosomal protein S4 [Clostridium butyricum 5521] gi|237656965|gb|EEP54521.1| ribosomal protein S4 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 199 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 25/214 (11%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K + K+ RR+G N+ G PK+ + G G R K S +G QL KQ+++ Sbjct: 1 MAKMMGPRFKLCRRLGLNVNGHPKA---MKRAGNG--SARDSKKLSPYGTQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F + ++A + + T + LI LE RLD IV+R F ++ ARQ V H H Sbjct: 56 YYG-VMEKQFATYARKAFKDKDQTGYALIKRLECRLDNIVFRLGFASSLAQARQMVVHGH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--------LASVLEASQLAERDVPEYISVNH 172 +LVNG VNI S+ GDV+ +++KS++ L+++L +V Y++ N Sbjct: 115 ILVNGEKVNIPSFNVNIGDVVALREKSQKNEMFRDNFLSNIL--------NVYPYLTKNE 166 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +R P + P+ + +LVVE+YS+ Sbjct: 167 AEFSGSLLRYPERSE---VPIQINDSLVVEYYSK 197 >gi|166239974|gb|ABY86503.1| ribosomal protein S4 [Silene fruticosa] Length = 205 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 17/213 (7%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNM 175 NHRH+LVNGR V+I SYRCK D I K K K A +L + D +P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDKQKSRALILNYLDSSPPDELPKHLTLDPFPY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 172 KFPYKGLINQIIDSKW-VGLKINELLVVEYYSR 203 >gi|313892596|ref|ZP_07826183.1| ribosomal protein S4 [Dialister microaerophilus UPII 345-E] gi|329121298|ref|ZP_08249925.1| 30S ribosomal protein S4 [Dialister micraerophilus DSM 19965] gi|313118993|gb|EFR42198.1| ribosomal protein S4 [Dialister microaerophilus UPII 345-E] gi|327470232|gb|EGF15695.1| 30S ribosomal protein S4 [Dialister micraerophilus DSM 19965] Length = 197 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 11/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + + K RR G N++G PK+ + H + K S +G+QL KQK+K Sbjct: 1 MATNRNPRFKTSRRFGLNIYGHPKA---LKRQTADAH----QKKQSEYGMQLAEKQKVKA 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y ++ E++F + +A R G NL++ LE RLD IVYRA F +I ARQ VNH Sbjct: 54 IY-NLLERQFYRYYDKARRMSGVVGENLLALLERRLDNIVYRAGFARSIRQARQMVNHGL 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 + VNG+ V+I SY + G V+ +++ + ++ ++L D+P YI + DN T Sbjct: 113 ISVNGKKVDIPSYSVQPGQVVSLRENYRSNEMFKQSFNELKTFDLP-YIEKSFDNWSVTL 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +++PY + +VE YS+ Sbjct: 172 TRIPLR-EELPYKDEVNETYIVELYSK 197 >gi|51210012|ref|YP_063676.1| ribosomal protein S4 [Gracilaria tenuistipitata var. liui] gi|62287237|sp|Q6B8N4|RR4_GRATL RecName: Full=30S ribosomal protein S4, chloroplastic gi|50657766|gb|AAT79751.1| 30S ribosomal protein S4 [Gracilaria tenuistipitata var. liui] Length = 201 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 22/214 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ L G + ++ + G HGQ+ + KPS + L+L KQK++ Sbjct: 1 MSRYRGPRLRISRRLGD-LPGLTRK-ISKKLSPAGEHGQQLR-KPSEYSLRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K A + G T L+ LE RLD +++R PT+ AARQ VNH H Sbjct: 58 NYG-LSEKQLSKYIKIAKKVTGSTGLILLQILEMRLDNVIFRLGLSPTLPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--------DVPEYISVNH 172 +L+N + V+I SY+CK GD+I+V+ K + L +R +P ++ +N Sbjct: 117 ILINKQKVSICSYQCKPGDIIDVQAKD-------SSQNLVKRYLSFPTLVGIPNHLELNT 169 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A +I + ++ + M LVVE+YSR Sbjct: 170 KTLNA---KINAIVERESVALQMNELLVVEYYSR 200 >gi|212697279|ref|ZP_03305407.1| hypothetical protein ANHYDRO_01847 [Anaerococcus hydrogenalis DSM 7454] gi|325848945|ref|ZP_08170455.1| ribosomal protein S4 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212675728|gb|EEB35335.1| hypothetical protein ANHYDRO_01847 [Anaerococcus hydrogenalis DSM 7454] gi|325480589|gb|EGC83651.1| ribosomal protein S4 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 197 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 11/171 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 QRRK S +G+Q R KQK K YG +SEK+FRS +++A + G T NLI E RLD Sbjct: 35 QRRK--LSEYGMQQREKQKAKFIYG-VSEKQFRSYYEKASKMHGQTGENLIILCERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLE 155 I +R+ T ARQ V H H+L+NG+SV+I S KEGDVIEV++KS+ ++ E Sbjct: 92 IAFRSGLARTRREARQVVTHGHLLLNGKSVDIPSILVKEGDVIEVREKSRSSQLFKAIKE 151 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +Q + ++ + +N+ P+ +D+ PV + ++VEFYS+ Sbjct: 152 TNQ--SFGIVSWLDSDLENLKVKVTNFPTR-EDIDIPV--EERMIVEFYSK 197 >gi|168704561|ref|ZP_02736838.1| 30S ribosomal protein S4 [Gemmata obscuriglobus UQM 2246] Length = 202 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS--PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ K K++R +G ++ + + + R Y PG+HGQR K K S +GL LR K+K+ Sbjct: 1 MSRHSQPKGKVNRALGMVIYEKRGAVKALERREYRPGMHGQR-KGKVSEYGLALREKKKI 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG + E++ ++ A +S +T L+ E RLD +V RA F T ARQ VNH Sbjct: 60 KHYYG-LHERQLVRFYQLATKSPENTGTELLVLCERRLDNVVRRAGFARTRDEARQGVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVA 177 H VNGR V++ SY K GDV+ VK + E +L E +++ + + + Sbjct: 119 GHFQVNGRKVDVASYLVKAGDVVAVKARPNLQKKYRE--RLTEGLHSADWLVSDAEALSF 176 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T R+P+ DV PV +Q V+E SR Sbjct: 177 TVTRLPAD-GDVSLPVDIQR--VIEILSR 202 >gi|221195455|ref|ZP_03568510.1| ribosomal protein S4 [Atopobium rimae ATCC 49626] gi|221184642|gb|EEE17034.1| ribosomal protein S4 [Atopobium rimae ATCC 49626] Length = 197 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 5/160 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +G+QLR KQK K YG + E +F ++ A ++ G T NL+S LE+RLD +V+R F Sbjct: 42 YGMQLREKQKAKFIYG-VLENQFHGYYELAKKNPGITGDNLMSILETRLDNVVFRLGFAR 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE 166 T ARQ V H H+ VNG+ V+I SYR K+GDVI V K+K L + E+ +E VP Sbjct: 101 TRKEARQTVRHGHITVNGQRVDIPSYRIKKGDVIAVSSKAKDLLPIKESLIASEHTAVPA 160 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I ++ D + T + +P+ + + + L+VE YS+ Sbjct: 161 WIELDLDKLQGTVLELPNRDQ---IDLDIDAQLIVELYSK 197 >gi|257784936|ref|YP_003180153.1| 30S ribosomal protein S4 [Atopobium parvulum DSM 20469] gi|257473443|gb|ACV51562.1| ribosomal protein S4 [Atopobium parvulum DSM 20469] Length = 197 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S +G+QLR KQK K YG + E +F ++ A ++ G T NL+S LE+RLD +++R F Sbjct: 40 SEYGMQLREKQKAKFIYG-VLENQFHGYYEMAKKNPGITGDNLMSILETRLDNVIFRLGF 98 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 T ARQ V H H+ VNG+ V+I SYR K GDVI V K+K L + EA +E V Sbjct: 99 ARTRKEARQTVRHGHITVNGQRVDIPSYRVKSGDVIAVASKAKDLLPIKEALISSEHMAV 158 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ V+ + + T +++P+ + + + L+VE YS+ Sbjct: 159 PAWLEVDIEKLQGTVLQLPTRDQ---IDLEIDAQLIVELYSK 197 >gi|118616624|ref|YP_904956.1| 30S ribosomal protein S4 [Mycobacterium ulcerans Agy99] gi|152112235|sp|A0PMB6|RS4_MYCUA RecName: Full=30S ribosomal protein S4 gi|118568734|gb|ABL03485.1| 30S ribosomal protein S4, RpsD [Mycobacterium ulcerans Agy99] Length = 201 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 106/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G +S R Y PG HG R + K S + QL+ KQK + YG + EK+FR Sbjct: 13 RRLGTDLVGGDQS-FEKRPYPPGQHG-RARIKDSEYRQQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD +VYRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRHSGKTGEELLKILESRLDNVVYRAGLARTRRMARQLVSHGHFSVNGVHVNVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+ S A + A +R +P ++ V ++P + +VP Sbjct: 130 YRVSQYDIIDVRDNSLNTVPFQIARETAGDRPIPSWLQVVGGRQRILIHQLPERAQIEVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + L+VE+YS+ Sbjct: 190 ----LTEQLIVEYYSK 201 >gi|256370802|ref|YP_003108627.1| 30S ribosomal protein S4 [Candidatus Sulcia muelleri SMDSEM] gi|256009594|gb|ACU52954.1| 30S ribosomal subunit protein S4 [Candidatus Sulcia muelleri SMDSEM] Length = 223 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 6/160 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S++ +QL KQK+K YG I EK+FR +F++A + +G L+ ESRLD IVYR K Sbjct: 67 SFYFIQLLEKQKVKYTYG-ILEKQFRKMFEKASKKKGRKGEILLQLCESRLDNIVYRLKL 125 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK-SKQLASVLEASQLAERDV 164 T ARQ V+HRH+ VNG+ VNI SY K GD I + +K KQ A +LE +L + V Sbjct: 126 SHTRPEARQLVSHRHITVNGKIVNIPSYNLKPGDKISLIEKYKKQKAILLEKKRLVGK-V 184 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 ++S +++N + IP + P ++ NL+VE Y Sbjct: 185 TTWLSWDNENFIGILKSIP---RREQIPEMINENLIVELY 221 >gi|311744779|ref|ZP_07718575.1| 30S ribosomal protein S4 [Aeromicrobium marinum DSM 15272] gi|311311896|gb|EFQ81817.1| 30S ribosomal protein S4 [Aeromicrobium marinum DSM 15272] Length = 202 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 23/215 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G + R Y PG HG R + K S + QL+ KQK + Sbjct: 1 MARYTGPLTKKSRRLGVDLVG-GDAAFERRPYPPGQHG-RTRIKESEYRTQLQEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++ A R G T NL++ LESRLD +VYR+ T ARQ V H H Sbjct: 59 TYG-VLEKQFRRYYELASRRPGKTGDNLLTMLESRLDNVVYRSGLARTRRHARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVN-------- 171 LVNG NI S++ + D+I+VK KS + + A + + D VP ++ V+ Sbjct: 118 FLVNGVKTNIPSFQVSKFDIIDVKPKSLETTPFIIARETHDSDTVPAWLDVSPTRGRILV 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 H V + +P +Q L+VE+YS+ Sbjct: 178 HQQPVREQITVP-----------IQEQLIVEYYSK 201 >gi|295698627|ref|YP_003603282.1| ribosomal protein S4 [Candidatus Riesia pediculicola USDA] gi|291157482|gb|ADD79927.1| ribosomal protein S4 [Candidatus Riesia pediculicola USDA] Length = 206 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-----KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M + +K K+ RR G +L+ + +S + PG HG + KS+ S +G+Q R K Sbjct: 1 MGRYLGAKLKLSRREGTDLFLKSNIRQIESKCKIDRF-PGQHGAK-KSRLSDYGIQFREK 58 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG I E++FR + ++ + +G+T NL+ LE RLD +VYR T ARQ Sbjct: 59 QKLRRIYG-ILERQFRRYYMKSSKLKGNTGENLLVLLERRLDNVVYRIGLGSTRSEARQL 117 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNH 172 V+H+ +LVN + VNI SY+ D+IE + S ++ S +E SQ +R+ ++ ++ Sbjct: 118 VSHKSILVNKKIVNIPSYQVNIDDIIETSEFSSSQNRIKSSIELSQ--QREQVSWLEISS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M +R+P ++D P + +L+VE YS+ Sbjct: 176 EKMRGRVLRLP--VRD-DLPTDINEHLIVELYSK 206 >gi|319760353|ref|YP_004124291.1| 30S ribosomal protein S4 [Candidatus Blochmannia vafer str. BVAF] gi|318039067|gb|ADV33617.1| 30S ribosomal protein S4 [Candidatus Blochmannia vafer str. BVAF] Length = 207 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 104/177 (58%), Gaps = 7/177 (3%) Query: 32 YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF 91 + PG H R K++ S +G+QLR KQK+K+ YG I E++F + +K+A R +G+T L+ Sbjct: 36 HSPGQHNIR-KARYSDYGMQLREKQKVKRIYG-ILERQFVNYYKKAARIKGNTGEILLQL 93 Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 LESRLD +VYR F T +RQ V+H+ V+VNGR VNI SY+ VI++ +SK Sbjct: 94 LESRLDNVVYRMGFGSTRAESRQLVSHKSVVVNGRVVNIPSYQVMSDTVIQISTRSKHQT 153 Query: 152 SVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A ++AE R+ +I V+ + F R P + + +L+VE YS+ Sbjct: 154 RIHAALEIAEQQRERVLWIEVDSIKLKGFFKRRP---ERSELSANIDEHLIVELYSK 207 >gi|157689436|gb|ABV65274.1| ribosomal protein S4 [Capparis flexuosa] Length = 193 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 109/181 (60%), Gaps = 17/181 (9%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKS+ L Sbjct: 80 EMRLDNILFRLGMALTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDIITVKDEQKSRTL 139 Query: 151 A-SVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYS 205 ++L++S A +++P++++++ ++ +V + R LK + LVVE+YS Sbjct: 140 VQNLLDSS--AHQELPKHLTLHTFQYEGLVNQIIDRKCVGLK-------INELLVVEYYS 190 Query: 206 R 206 R Sbjct: 191 R 191 >gi|309812264|ref|ZP_07706019.1| ribosomal protein S4 [Dermacoccus sp. Ellin185] gi|308433569|gb|EFP57446.1| ribosomal protein S4 [Dermacoccus sp. Ellin185] Length = 202 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+ +L G K+ R + PG HG+ R + Y QL+ KQK + Sbjct: 1 MARYTGPITKKSRRLKTDLVGGDKN-FEMRPFPPGQHGRGRIQEKEYLH-QLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F +KEA R G T NL+ LESRLD ++YRA T AARQ V H H Sbjct: 59 TYG-VMEKQFVRYYKEAARRPGKTGENLLIILESRLDNVIYRAGLARTRRAARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATF 179 VNG V++ SYR ++ D+I V++KS++ + L ER VP ++ V + Sbjct: 118 FEVNGVRVDVPSYRVEQYDIITVREKSREAFPIQLARETFGERPVPAWLHVVPGTLQVLI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + + + Q L+VE YS+ Sbjct: 178 HQLPTR-EQIDSQLTEQ--LIVELYSK 201 >gi|320120610|gb|EFE29196.2| 30S ribosomal protein S4 [Filifactor alocis ATCC 35896] Length = 218 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 111/199 (55%), Gaps = 14/199 (7%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR G N+ PK+ G + K S +G QL KQK+K YY D+ E Sbjct: 34 RFKVARRFGVNVCAHPKALK---------RGATQVRKQSDYGKQLNEKQKLKAYY-DMQE 83 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+F + + A ++G+ NL+ LE RLD +VYR F T+ ARQ V H H+LVNG+ Sbjct: 84 KQFANWVEAAMSAKGNAGENLVQRLECRLDNLVYRLGFGSTLRQARQMVVHHHILVNGKR 143 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 V+ SY K GDVI ++++S+ + + + + ++ Y+ + +N+ V +PS + Sbjct: 144 VDRPSYEVKVGDVISLRERSQSIDTFKNNFKESLCNLS-YLQKDENNLSGKLVALPSR-E 201 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +VP V +L++E+YS+ Sbjct: 202 EVPIEVT--DSLIIEYYSK 218 >gi|15894757|ref|NP_348106.1| 30S ribosomal protein S4 [Clostridium acetobutylicum ATCC 824] gi|26399604|sp|Q97J08|RS4B_CLOAB RecName: Full=Putative 30S ribosomal protein S4 B gi|15024424|gb|AAK79446.1|AE007659_1 Ribosomal protein S4 [Clostridium acetobutylicum ATCC 824] gi|325508895|gb|ADZ20531.1| 30S ribosomal protein S4 [Clostridium acetobutylicum EA 2018] Length = 192 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 19/208 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K+ R +G N++G PK+ L+ ++ K S +G QL KQK++ Sbjct: 1 MARFMGPRFKLARHLGVNVFGHPKA----------LNRGVKQHKLSEYGEQLLEKQKLRA 50 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F+ I A +S+ + L+ LE RLD +VYR F T+ ARQ V+H H Sbjct: 51 YYG-VLEKQFKKIVFNALKSKEKSEDILVQSLERRLDNLVYRLGFGSTLREARQMVSHGH 109 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP--EYISVNHDNMVAT 178 +LVNG+ V+I SY+ GD + ++ KS+++ + AS +P YI + ++ Sbjct: 110 ILVNGQKVDIPSYKVNIGDEVSLRSKSRKIQTY--ASNFTT-IIPAVTYIEKDTESFSGR 166 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P K V PV+++ + V+EFYS+ Sbjct: 167 LIRLP---KSVEVPVMVKYSKVLEFYSK 191 >gi|308233884|ref|ZP_07664621.1| 30S ribosomal protein S4 [Atopobium vaginae DSM 15829] gi|328943591|ref|ZP_08241056.1| 30S ribosomal protein S4 [Atopobium vaginae DSM 15829] gi|327491560|gb|EGF23334.1| 30S ribosomal protein S4 [Atopobium vaginae DSM 15829] Length = 197 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S +G QLR KQK K YG I EK+FR + +A ++ G T NL+S LE+RLD +V+R F Sbjct: 40 SEYGTQLREKQKAKFIYG-ILEKQFRGYYTKAMKAEGITGDNLMSLLETRLDNVVFRLGF 98 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 T +RQ + H H+ VNG+ V+I SY+ K DVI V K+K L + E+ ++ER V Sbjct: 99 ARTRKESRQTIRHGHITVNGKRVDIPSYQVKADDVIAVSSKAKDLLPIKESLIVSERMAV 158 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ V+ + + ++IP ++D + + L+VE YS+ Sbjct: 159 PAWLEVDVEKLQGKVLQIP--VRD-QIDLDIDAQLIVELYSK 197 >gi|296141063|ref|YP_003648306.1| ribosomal protein S4 [Tsukamurella paurometabola DSM 20162] gi|296029197|gb|ADG79967.1| ribosomal protein S4 [Tsukamurella paurometabola DSM 20162] Length = 201 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 9/196 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G ++ R Y PG HG R + K S + LQL+ KQK + YG + EK+F Sbjct: 13 RRLGVDLVGGSEA-FERRPYPPGQHG-RARVKESEYLLQLKEKQKARFLYG-VMEKQFSR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA + G T L+ LE+RLD +VYRA T ARQ V H H VNG V++ S Sbjct: 70 YYQEAKTASGKTGDALLQILETRLDNVVYRAGLARTRRQARQLVTHGHFTVNGVRVDVPS 129 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLK-DVP 190 YR + D+I+V+ KS A + + ER ++ V + R+P + DVP Sbjct: 130 YRVSQYDIIDVRPKSLGTTPFQIARETVGERTPAAWLQVVPSTLRILVHRVPEREQIDVP 189 Query: 191 YPVIMQPNLVVEFYSR 206 + Q L+VE+YS+ Sbjct: 190 F----QEQLIVEYYSK 201 >gi|67035584|gb|AAY62723.1| small ribosomal protein subunit 4 [Kiaeria glacialis] Length = 194 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNGR VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNGRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|292669832|ref|ZP_06603258.1| 30S ribosomal protein S4 [Selenomonas noxia ATCC 43541] gi|292648629|gb|EFF66601.1| 30S ribosomal protein S4 [Selenomonas noxia ATCC 43541] Length = 197 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQL+ KQK K YG + E++FR +++A + G T NL+S LE RLD Sbjct: 33 RRTNRKVSEYGLQLKEKQKAKFVYG-VLERQFRGYYEKAKKMSGVTGENLLSLLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R T ARQ V H H VNG+ V+I S +EGDVIEV +KS+ A E + Sbjct: 92 VVFRLGLANTRRQARQLVRHGHFTVNGKRVDIPSALVREGDVIEVAEKSRASAFFKELKE 151 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ + N+ T R P +++ PV Q +VE YS+ Sbjct: 152 SSNALSAPAWLTADQANLTGTVTRFPHR-EEIDVPVNEQA--IVELYSK 197 >gi|33413197|emb|CAD86734.1| ribosomal protein small subunit 4 [Kiaeria glacialis] Length = 185 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEKKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNGR VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNGRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|11466426|ref|NP_038430.1| ribosomal protein S4 [Mesostigma viride] gi|14548249|sp|Q9MUN0|RR4_MESVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|7259569|gb|AAF43870.1|AF166114_82 ribosomal protein S4 [Mesostigma viride] Length = 205 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 5/166 (3%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K+K S +G++L+ KQK+K YG ++EK+ ++A +G T L+ +LE RLD V+ Sbjct: 42 KTKLSQYGIRLQEKQKLKYNYG-VTEKQLLLYIRKARTIKGSTGQMLLQYLEMRLDNTVF 100 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLA 160 R PTI ARQ VNH H++VN R V I SY+CK D++ ++ +K VL + + Sbjct: 101 RLGLAPTIAGARQLVNHGHIMVNNRIVTIPSYKCKPKDILSIRNNNKSRNLVLNNLASPS 160 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ + D + AT I K +P + LVVE+YSR Sbjct: 161 VSKIPNHLLLKKDTLTATVNGIVER-KSIPLEI--NELLVVEYYSR 203 >gi|108796928|ref|YP_636228.1| ribosomal protein S4 [Pseudendoclonium akinetum] gi|90101666|sp|Q3ZJ39|RR4_PSEAK RecName: Full=30S ribosomal protein S4, chloroplastic gi|56159626|gb|AAV80650.1| ribosomal protein S4 [Pseudendoclonium akinetum] Length = 205 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 16/213 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKS---KPSYFGLQLRAKQK 57 MSK + ++ R++G+ L G S ++ ++ PG HGQ + S +GL+L KQK Sbjct: 1 MSKYRGPRLRLVRKLGK-LPGL-TSKISKKTNTPGEHGQPQNKLLKNRSPYGLRLLEKQK 58 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++ Y +I+E++ K+A G T L++ LE RLD IVYR PTI AARQ V+ Sbjct: 59 LRFNY-NITERQLLRYVKQAKNLTGSTGEILLAILEMRLDNIVYRLGMAPTIVAARQLVS 117 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLEASQLAERDVPEYISVNHDNM 175 H H+LVN + VNI SY C+ +VI VK K S+ L + A VP ++S N +N+ Sbjct: 118 HGHILVNKQKVNIPSYPCQLKEVISVKDKKASRDLVKKF-VQESAVNPVPSHLSFNKENL 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 V + + + +Q N LV+E+YSR Sbjct: 177 VGIVNNVATR-----EWIGLQINELLVIEYYSR 204 >gi|258611701|ref|ZP_05711611.1| ribosomal protein S4 [Listeria monocytogenes FSL R2-503] gi|258605525|gb|EEW18133.1| ribosomal protein S4 [Listeria monocytogenes FSL R2-503] Length = 170 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 97/163 (59%), Gaps = 5/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +GLQ KQK++ YG ++E++F++ F +A + +G N + LE RLD IVYR Sbjct: 13 KYSEYGLQQAEKQKLRHMYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T AARQ VNH H+ V+G+ V+I SY+ G VI V++KS + +++ E+ +++ Sbjct: 72 GLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF- 130 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VPEY++ + + + + R+P + + +VEFYSR Sbjct: 131 VPEYVTFDAEKLTGSLNRLP---ERSELAAEINEAFIVEFYSR 170 >gi|294155799|ref|YP_003560183.1| 30S ribosomal protein S4 [Mycoplasma crocodyli MP145] gi|291599886|gb|ADE19382.1| 30S ribosomal protein S4 [Mycoplasma crocodyli MP145] Length = 199 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 23/205 (11%) Query: 10 KIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K RR+G ++ G+ + R+Y PG HG +R K S +GL L KQK+K +G ISE Sbjct: 10 KKSRRLGFSILETGKEFAKGKKRTYAPGQHGNKR-VKLSDYGLHLYEKQKIKYVFG-ISE 67 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ + + +A + +G T NL+ LESRLD +VYRA F T ARQ VNH H LV+G+ Sbjct: 68 KQLQKSYIKATKIKGITGTNLLQVLESRLDNLVYRAGFAQTRRQARQLVNHNHFLVDGKK 127 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIP---- 183 +I S K G I +K+KS++ + +A LA + +++ N F R+P Sbjct: 128 ADIPSMSIKIGSTITLKEKSQKNIQITDA--LANKAASPWLTRKDFNF--KFDRLPERNE 183 Query: 184 --SSLKDVPYPVIMQPNLVVEFYSR 206 S +KD L+VE+Y++ Sbjct: 184 MHSEIKDA---------LIVEYYAK 199 >gi|116010491|emb|CAL37352.1| ribosomal protein S4 [Vincetoxicum nigrum] Length = 194 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQFVNHRH+LVNG V+I SYRCK GD+I VK QKSK L Sbjct: 81 EMRLDNILFRLGMASTIPAARQFVNHRHILVNGHIVDIPSYRCKPGDIITVKDEQKSKAL 140 Query: 151 AS-VLEASQLAERDVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 L++S + +++P ++ S + +V + D + V ++ N LVVE+Y Sbjct: 141 IQKSLDSS--SHQELPSHLILQSFQYKGLVNQII-------DSKW-VGLKINELLVVEYY 190 Query: 205 SR 206 SR Sbjct: 191 SR 192 >gi|226228207|ref|YP_002762313.1| 30S ribosomal protein S4 [Gemmatimonas aurantiaca T-27] gi|226091398|dbj|BAH39843.1| 30S ribosomal protein S4 [Gemmatimonas aurantiaca T-27] Length = 205 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 6/206 (2%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQKMKKY 61 R + KI RR+G L G R Y PG HGQ R+ K S + L+L AKQ ++ Y Sbjct: 3 RVGPRLKIIRRLGIQLPGLTAKDAERRPYPPGQHGQSTARRRKVSLYRLRLEAKQALRFY 62 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ISE + R + A G T +++ LE+RLD +V+R F TI AARQ V H HV Sbjct: 63 YG-ISENQLRRTYAMAKTRPGRTGDVMLAMLEARLDNVVFRLGFARTIPAARQLVVHGHV 121 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 VNG V+ YR + G++I++ + + V E Q + +P +++ D + + Sbjct: 122 YVNGSRVDRPGYRLRTGEMIKLDPRMAENPHVQEQLQRGPQVKLPGWLAKTDDAPLEGRM 181 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P + + VP+ +VE+Y+R Sbjct: 182 IAPPTRESVPF--ACNDAAIVEYYAR 205 >gi|71891998|ref|YP_277728.1| 30S ribosomal protein S4 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|90101676|sp|Q493I5|RS4_BLOPB RecName: Full=30S ribosomal protein S4 gi|71796104|gb|AAZ40855.1| 30S ribosomal subunit protein S4 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 207 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M+K K K+ RR G +L+ + ++++ PG H R KS+ S +G+QLR KQ Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGIRAIDSKCKLDQPPGQHNMR-KSRFSDYGIQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E++F + +K A R +G+T NL+ LESRLD VYR F T ARQ V Sbjct: 60 KVRRIYG-ILERQFSNYYKRAARIKGNTGENLLKLLESRLDNTVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNHDN 174 +H+ ++V R VNI SY+ VI++ +KS + + + + +L+E R+ +I V+ Sbjct: 119 SHKSIMVENRIVNIASYQVVPNTVIKIHKKSHKQSRIRASLELSEQQREKLAWIEVDPIK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R P + +L++E YS+ Sbjct: 179 LQGLFKRYPER---SELSANIDEHLIIELYSK 207 >gi|261367775|ref|ZP_05980658.1| ribosomal protein S4 [Subdoligranulum variabile DSM 15176] gi|282570573|gb|EFB76108.1| ribosomal protein S4 [Subdoligranulum variabile DSM 15176] Length = 200 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 15/183 (8%) Query: 29 TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL 88 T + PG GQ RK K Y QL KQK+K YG I EK+F + ++ A R G T NL Sbjct: 28 TTNRNPG--GQMRKKKSEY-ATQLNEKQKVKFVYG-ILEKQFHTYYETATRMPGQTGVNL 83 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 + +E RLD +VYR F T ARQ V+H H VNG+ VNI SY K GDVIEV + S+ Sbjct: 84 LVLVERRLDNVVYRLGFAKTRRDARQLVSHNHFTVNGKRVNIPSYLVKPGDVIEVIESSR 143 Query: 149 QLASVLEASQLAERD-----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 S ++ S+L D +P ++ + + + T V++P +D+ P+ +L+VE Sbjct: 144 ---SSVKFSKLLGEDAPVVLLPSWLERDKNALKGTVVKMPVR-EDIDVPI--AEHLIVEL 197 Query: 204 YSR 206 YS+ Sbjct: 198 YSK 200 >gi|328955886|ref|YP_004373219.1| SSU ribosomal protein S4P [Coriobacterium glomerans PW2] gi|328456210|gb|AEB07404.1| SSU ribosomal protein S4P [Coriobacterium glomerans PW2] Length = 198 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 +R+ K S +G QLR KQK K YG + EK+FR + A + G T NL++ LE+RLD + Sbjct: 35 KRRRKESEYGTQLREKQKAKFIYG-VLEKQFRRYYFRALKMTGITGENLMTLLETRLDNV 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 V+R F T ARQ V H H VNG V+I SY KEGDVI V K + L + EA Sbjct: 94 VFRLGFARTRKEARQTVRHGHFTVNGHRVDIPSYLVKEGDVIAVGAKFRDLLPIKEALIS 153 Query: 160 AER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +ER +VP ++ V+ + + + + +PS + ++ L++E YS+ Sbjct: 154 SERFEVPGWLEVDIEKLSGSVLSLPSREQ---ISTDIKEQLIIEHYSK 198 >gi|160415796|gb|ABX39205.1| small ribosomal protein 4 [Jaffueliobryum raui] gi|160415798|gb|ABX39206.1| small ribosomal protein 4 [Jaffueliobryum wrightii] gi|322719583|gb|ADX07728.1| small ribosomal protein subunit 4 [Jaffueliobryum wrightii] Length = 188 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ +++D Sbjct: 86 NMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQKD 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 186 >gi|63101099|gb|AAY33174.1| small ribosomal protein 4 [Jaffueliobryum latifolium] gi|67035692|gb|AAY62777.1| small ribosomal protein subunit 4 [Indusiella thianschanica] gi|322719581|gb|ADX07727.1| small ribosomal protein subunit 4 [Indusiella thianschanica] Length = 194 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ +++D Sbjct: 92 NMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQKD 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 192 >gi|160415794|gb|ABX39204.1| small ribosomal protein 4 [Indusiella thianschanica] Length = 188 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ +++D Sbjct: 86 NMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARKKSQAMVIKNVDFSQKD 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 186 >gi|302336354|ref|YP_003801561.1| SSU ribosomal protein S4P [Olsenella uli DSM 7084] gi|301320194|gb|ADK68681.1| SSU ribosomal protein S4P [Olsenella uli DSM 7084] Length = 197 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +G+QLR KQK K YG + EK+FR +++A + G NL+S LE+RLD +V+R F Sbjct: 42 YGIQLREKQKAKFIYG-VLEKQFRGYYEKAMKRDGIAGDNLMSILETRLDNVVFRLGFAR 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE 166 T ARQ V H H+ VNGR V+I SY+ K GDV+ V K+K L + EA +E VP Sbjct: 101 TRKEARQTVRHGHITVNGRRVDIPSYQVKAGDVVAVAPKAKDLLPIKEALISSEHMAVPA 160 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ V+ + + T ++ P ++D + + L+VE YS+ Sbjct: 161 WLEVDIEKLQGTVLQTP--VRD-QIDLDIDAQLIVELYSK 197 >gi|166092847|gb|ABY82376.1| ribosomal protein S4 [Silene sorensenis] Length = 201 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRTLIQNLIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|290961835|ref|YP_003493017.1| 30S ribosomal protein S4 [Streptomyces scabiei 87.22] gi|260651361|emb|CBG74483.1| 30S ribosomal protein S4 [Streptomyces scabiei 87.22] Length = 204 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A + +G T LI LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERASKVQGKTGEALIIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG V+ S+R K DV+ V+++S+Q E A+ + P Y+ VN + Sbjct: 119 IEVNGHKVDKPSFRVKPDDVVMVRERSRQKPLFEVAREGGFAADGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K+V PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEV--PVICDEQLVVEYYAR 204 >gi|310657466|ref|YP_003935187.1| 30S ribosomal protein s4 [Clostridium sticklandii DSM 519] gi|308824244|emb|CBH20282.1| 30S ribosomal protein S4 [Clostridium sticklandii] Length = 192 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 14/206 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K+ R +G N++ PK+ +N G + + K S +G QLR KQK+K Sbjct: 1 MARPMGPRFKVARSLGVNVFDHPKA-LN--------RGVKPQKKISEYGKQLREKQKLKA 51 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + EK+F+ + A S+G++ L+ LE RLD + YR F T+ ARQ V H H Sbjct: 52 YYG-VLEKQFKIYVEAAMHSKGNSGEKLVQRLEQRLDNMTYRLGFASTLRQARQMVVHGH 110 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+ SY+ + D I +K+KSK +A ++ ++P Y+ N ++ + Sbjct: 111 ILVNGKKVDRPSYKVEVEDTISLKEKSKSIAIFKDSFTSTTTNLP-YLEKNLNDFSGKLI 169 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P K P+ + + ++EFYS+ Sbjct: 170 AEP---KRDQVPIEVTDSYIIEFYSK 192 >gi|166092858|gb|ABY82383.1| ribosomal protein S4 [Silene cryptoneura] Length = 201 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIKNLIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|42524500|ref|NP_969880.1| 30S ribosomal protein S4 [Bdellovibrio bacteriovorus HD100] gi|81697762|sp|Q6MIP0|RS4B_BDEBA RecName: Full=30S ribosomal protein S4 B gi|39576709|emb|CAE80873.1| probable 30S ribosomal protein S4 [Bdellovibrio bacteriovorus HD100] Length = 208 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 5/203 (2%) Query: 5 ESSKHKIDRRIGENLWGRPKS-PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 ++ + K RR+ L G K+ + R Y PG HG +R+ K S F LQL KQK++ +YG Sbjct: 6 KTPRFKRQRRLLTELPGMGKAGALERRPYPPGQHGLQRR-KYSEFALQLEEKQKLRFHYG 64 Query: 64 DISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 + E++FR + +A +S+ + L++ LE RLD +V+R F +I AARQ V+H VL Sbjct: 65 -LREEQFRRLINKAKKSKATNWVEALVNLLEKRLDNVVFRLGFASSIPAARQLVSHGKVL 123 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 VNG+ VNIGS K GD I +K ++ Q + A Q +P +++ D R+ Sbjct: 124 VNGKKVNIGSQIIKVGDKITLKDEAYQNQVYMAAKQAPRLPLPSFMA-KEDVAGKEQGRL 182 Query: 183 PSSLKDVPYPVIMQPNLVVEFYS 205 P +P LV+ +YS Sbjct: 183 TDEPNLEAVPFAFEPGLVIGYYS 205 >gi|166239980|gb|ABY86508.1| ribosomal protein S4 [Lychnis chalcedonica] Length = 205 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 117/215 (54%), Gaps = 21/215 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGATGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN--- 171 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTIMAKDEQKSRVLIQNFLDSSPPE-ELPKHLTLDPFP 170 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++N I S+ K V + LVVE+YSR Sbjct: 171 YNNKAIIKEIIDSNSKWVGLKI--NELLVVEYYSR 203 >gi|299139416|ref|ZP_07032591.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX8] gi|298598685|gb|EFI54848.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 4 RESSKHKIDRRIGENL--WGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 R K K+ R +G L G+P + + R+Y PG HG+ ++ + FGLQLR KQK+ + Sbjct: 2 RGRKKFKLQRSLGIELPGLGKPGA-LAKRNYPPGQHGRAQRPTMTQFGLQLREKQKLLFH 60 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG E+ R + K S + +LI LE RLD +V+R F +I AARQ V+H H+ Sbjct: 61 YGLREEQLRRFVRKARSLSASNWIESLIGLLERRLDNVVFRLGFGRSIAAARQLVSHGHI 120 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA--TF 179 LVNGR IGS + G+V+ + +K+ QL ++ + + +P Y+ + + + Sbjct: 121 LVNGRRQTIGSMVLRPGEVVWLSEKAAQLEAIQSSLESPRLPLPSYLQLQNPGTPSKGIV 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP+S +P+ V E+Y++ Sbjct: 181 LFIPNS-SHIPFE--FNKKQVAEYYAK 204 >gi|294628350|ref|ZP_06706910.1| 30S ribosomal protein S4 [Streptomyces sp. e14] gi|292831683|gb|EFF90032.1| 30S ribosomal protein S4 [Streptomyces sp. e14] Length = 204 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A + +G T LI LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERASKVQGKTGEALIVELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--LASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG+ V+ S+R + DV++V+ +SK+ L ++ A E + P Y+ VN + Sbjct: 119 IQVNGQKVDKPSFRVRPDDVVQVRDRSKEKTLFTIAREGGFAPEGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|157689574|gb|ABV65343.1| ribosomal protein S4 [Thymelaea hirsuta] Length = 194 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK + K LA Sbjct: 81 EMRLDNILFRLGMASTIPQARQLVNHRHLLVNGRIVDIPSYRCKPRDIISVKDEQKSLAL 140 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 V L++S ++P++++++ + + + + D + V ++ N LVVE+YSR Sbjct: 141 VQNYLDSS--THEELPKHLTLH----TLQYKGLVNQIIDRKW-VGLKINELLVVEYYSR 192 >gi|89112939|gb|ABD61088.1| ribosomal protein subunit 4 [Schistidium rivulare] Length = 172 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++D Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKD 129 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|166092850|gb|ABY82378.1| ribosomal protein S4 [Silene integripetala] Length = 201 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R SK S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSSKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|118411185|ref|YP_874579.1| 30S ribosomal protein S4 [Thalassiosira pseudonana] gi|125987754|sp|A0T0W7|RR4_THAPS RecName: Full=30S ribosomal protein S4, chloroplastic gi|116739932|gb|ABK20802.1| 30S ribosomal protein S4 [Thalassiosira pseudonana] Length = 205 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 10/152 (6%) Query: 1 MSKRESSKHKIDRRIGENLWG--RPKSPVNTRSYGPGLHGQ---RRKSKPSYFGLQLRAK 55 MS+ K +I RR+G+ L G + KS TR PG HG+ K K + +G++L K Sbjct: 1 MSRYRGPKLRITRRLGD-LPGLTQKKSKKTTR---PGQHGKNLGEGKKKTTEYGIRLEEK 56 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K YG ISE + KEA R G T L+ LE RLDTI + + PTI AARQ Sbjct: 57 QKLKFNYG-ISENQLYHYIKEARRRNGVTGLILLQLLEMRLDTICFSLGYAPTIAAARQL 115 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 VNH H++VN + ++I S++C+ GDVI +K KS Sbjct: 116 VNHGHIIVNDKVIDIPSFQCQIGDVIGIKSKS 147 >gi|305672359|gb|ADM63603.1| ribosomal protein S4 [Diervilla sessilifolia] Length = 173 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 2/139 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSGLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRHVLVNGR V+I SYRCK D+I + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITARDKQNSRAL 138 Query: 153 VLEASQLAER-DVPEYISV 170 + + + R ++P+++++ Sbjct: 139 IQNSLDSSPREELPKHLTL 157 >gi|87311708|ref|ZP_01093824.1| 30S ribosomal protein S4 [Blastopirellula marina DSM 3645] gi|87285602|gb|EAQ77520.1| 30S ribosomal protein S4 [Blastopirellula marina DSM 3645] Length = 188 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 10/179 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+ PG+H R +PS +G L KQK+K YYG + E++ R F+ A +G+T L+ Sbjct: 18 RATPPGMH--TRPRRPSNYGAALMEKQKIKHYYG-LGERQLRRYFEMAKHMKGNTGEQLL 74 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 E RLD +V R+ T ARQ + H H LVNG V+ S++ + GDV+ V+ + K Sbjct: 75 VLCERRLDNVVRRSGMALTRPQARQGIVHGHFLVNGAKVDKPSFQMRPGDVVSVRNREK- 133 Query: 150 LASVLEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +L S L E V E++S + + + A+F IP++ DV PV + N+VVEF SR Sbjct: 134 -LQILYRSILGENGSQVAEFVSSDQETLSASFDSIPTA-GDVSLPVDV--NMVVEFMSR 188 >gi|307694124|ref|ZP_07636361.1| 30S ribosomal protein S4 [Ruminococcaceae bacterium D16] Length = 200 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 11/173 (6%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 GQ R+ K S + +QL KQK+K YG I EK+F +++A R G T NL++ +E RLD Sbjct: 35 GQMRR-KQSEYAMQLTEKQKVKFVYG-IMEKQFHMYYEKATRMPGKTGENLLTLIERRLD 92 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 +VYR F T ARQ V H H VNG+ V+I S+ K GDVIEV++KS+ +SV Sbjct: 93 NVVYRLGFAMTRREARQLVTHGHFTVNGQRVDIPSFLVKVGDVIEVREKSR--SSVKFKR 150 Query: 158 QLAER----DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E +VP+++ + + V +P D+ +PV + +L+VE YS+ Sbjct: 151 LLGEDAPVVNVPKWLDHAKNTLQGKVVALPVR-DDIDFPV--EEHLIVELYSK 200 >gi|166092841|gb|ABY82372.1| ribosomal protein S4 [Silene uniflora] Length = 201 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D I K + K +A + +++S E VP++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSIALIQNFIDSSPPEE--VPKHLTLDPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 PYKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|159901450|ref|YP_001547697.1| 30S ribosomal protein S4 [Herpetosiphon aurantiacus ATCC 23779] gi|226699075|sp|A9B436|RS4_HERA2 RecName: Full=30S ribosomal protein S4 gi|159894489|gb|ABX07569.1| ribosomal protein S4 [Herpetosiphon aurantiacus ATCC 23779] Length = 211 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 8/177 (4%) Query: 34 PGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 PG HG R+ + S +G+QLR KQK+++ YG + E++FR + A R+ G T L+ L Sbjct: 39 PGQHGASVRRRQLSDYGVQLREKQKVRRIYG-VLERQFRRYYGIATRTTGQTGAVLLQIL 97 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--- 149 E RLD +V+R + T ARQ VNH H+ VNGR +I S + GDVI V+ +S++ Sbjct: 98 ERRLDNVVFRLGYAVTRAQARQLVNHGHITVNGRKTDIPSALVEVGDVIGVRAESRKRDY 157 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + E QL P ++S++ M PS + + + L+VEFYSR Sbjct: 158 FKDLEETKQLNRVSPPSWLSLDAGKMEGVVQTFPSREE---LDMSINEQLIVEFYSR 211 >gi|269114854|ref|YP_003302617.1| 30S ribosomal protein S4 [Mycoplasma hominis] gi|268322479|emb|CAX37214.1| 30S ribosomal protein S4 [Mycoplasma hominis ATCC 23114] Length = 199 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 114/215 (53%), Gaps = 25/215 (11%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MSK S K RR G +L K + R+ PG HG +R SKPS + L + KQK+ Sbjct: 1 MSKFVGSMFKKSRRYGISLLENNKEFTKGKKRTTAPGQHGAKR-SKPSDYQLHMYEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++E++F+++F + + G T NL+ +ESRLD +V+RA F T ARQ VNH Sbjct: 60 RYMYG-LNERQFKNLFIKVSKKAGVTGINLLQTVESRLDNLVFRAGFARTRAQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISV----NHDN 174 H V+G NI S K G VIE+K+ + + +A +D E ++V +N Sbjct: 119 GHFTVDGCKANIPSMIVKVGSVIELKEALQ--------NNVAIKDAIEVMTVAPWLTKEN 170 Query: 175 MVATFVRIPSS---LKDVPYPVIMQPNLVVEFYSR 206 TF R+P KD+ +L+VE+Y+R Sbjct: 171 FKVTFTRLPERNEFAKDI------NESLIVEYYNR 199 >gi|166092852|gb|ABY82379.1| ribosomal protein S4 [Silene conica] Length = 201 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E +VP++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSAPPE-EVPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|166092835|gb|ABY82368.1| ribosomal protein S4 [Silene samia] gi|166092855|gb|ABY82381.1| ribosomal protein S4 [Silene latifolia] Length = 201 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E +VP++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-EVPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|329938951|ref|ZP_08288325.1| 30S ribosomal protein S4 [Streptomyces griseoaurantiacus M045] gi|329301836|gb|EGG45729.1| 30S ribosomal protein S4 [Streptomyces griseoaurantiacus M045] Length = 204 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A +++G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERAAKTQGKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS--KQLASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG V+ S+R K DV+ V+++S K L S+ A E + P Y+ VN + Sbjct: 119 IEVNGHKVDKPSFRVKPDDVVMVRERSREKTLFSIAREGGFAPEGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|17154473|emb|CAC83795.1| ribosomal protein S4 [Chasmanthe aethiopica] Length = 176 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 15 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 133 Query: 151 ASVLEASQLAERDVPEYISVN 171 L AS + ++P +++++ Sbjct: 134 IQNLIASSPHQEELPNHLTID 154 >gi|160881758|ref|YP_001560726.1| RNA-binding S4 domain-containing protein [Clostridium phytofermentans ISDg] gi|189045375|sp|A9KJG7|RS4_CLOPH RecName: Full=30S ribosomal protein S4 gi|160430424|gb|ABX43987.1| RNA-binding S4 domain protein [Clostridium phytofermentans ISDg] Length = 198 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 112/204 (54%), Gaps = 25/204 (12%) Query: 21 GRPKSPVNTRSYGPGLH----GQRRKS---------KPSYFGLQLRAKQKMKKYYGDISE 67 R SPV R GL G +KS K S +G QLR KQK K YG + E Sbjct: 2 ARDMSPVLKRCRALGLEPTFLGIDKKSNRNFARAGKKISEYGTQLREKQKAKFIYG-VLE 60 Query: 68 KKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 K FR+ F +A + + G T NL+ LE RLD +++R + T ARQ V+H+HVLVNG+ Sbjct: 61 KPFRNNFDKAKKLKYGTTGENLLILLELRLDNVMFRMGYGRTRTEARQIVDHKHVLVNGK 120 Query: 127 SVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLAERDVPEYISVNHDNMVATFVRIP 183 VNI SY+ K GDVI +K+K K + +LE + R VP ++ +H+N+ T IP Sbjct: 121 CVNIPSYQVKAGDVISIKEKCKSAQRYKDILEVTD--GRTVPAWLEADHENLTGTVKEIP 178 Query: 184 SSLK-DVPYPVIMQPNLVVEFYSR 206 + + DVP + L+VE YS+ Sbjct: 179 TRDQIDVPVNEV----LIVELYSK 198 >gi|284049231|ref|YP_003399570.1| ribosomal protein S4 [Acidaminococcus fermentans DSM 20731] gi|283953452|gb|ADB48255.1| ribosomal protein S4 [Acidaminococcus fermentans DSM 20731] Length = 197 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R+ K S +G+QL KQK K YG + EK+FR +++A + G NL+ LE RLD Sbjct: 33 KRQFKKKSEYGMQLAEKQKAKFIYG-VLEKQFRGYYEKAKKMEGIAGANLLILLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +VYR T ARQ V H H+ VNG+ ++I S K GDV+ V + S+ A ++ Sbjct: 92 VVYRMGLAHTRRQARQLVTHGHIAVNGKRLDIPSALVKAGDVVSVMENSRSSAYFKGMAE 151 Query: 159 -LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + VP +ISV+ N+ R+P +D+ PV + ++VE YS+ Sbjct: 152 VLGKTSVPAWISVDAQNLCGKVDRLPVR-EDIDVPV--EEQMIVELYSK 197 >gi|114804267|ref|YP_762263.1| ribosomal protein S4 [Morus indica] gi|122166803|sp|Q09X15|RR4_MORIN RecName: Full=30S ribosomal protein S4, chloroplastic gi|78100319|gb|ABB20960.1| ribosomal protein S4 [Morus indica] Length = 201 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKP----RAGSNLRNQLRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I VK QKSK L + L++S + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIIRVKDEQKSKSLVQNYLDSS--SREELPKHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +I S K V + LVVE+YSR Sbjct: 174 SVNQIIDS-KCVGLKI--NELLVVEYYSR 199 >gi|17154629|emb|CAC83926.1| ribosomal protein S4 [Klattia flava] Length = 175 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKTQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIISTKNKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P ++++N Sbjct: 133 IQNFIASSPQQEELPNHLTIN 153 >gi|313895093|ref|ZP_07828650.1| ribosomal protein S4 [Selenomonas sp. oral taxon 137 str. F0430] gi|320529822|ref|ZP_08030899.1| ribosomal protein S4 [Selenomonas artemidis F0399] gi|312975988|gb|EFR41446.1| ribosomal protein S4 [Selenomonas sp. oral taxon 137 str. F0430] gi|320137840|gb|EFW29745.1| ribosomal protein S4 [Selenomonas artemidis F0399] Length = 197 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQL+ KQK K YG + E++FR +++A + G T NL+S LE R+D Sbjct: 33 RRTNRKVSEYGLQLKEKQKAKFIYG-VLERQFRGYYEKAKKMSGVTGENLLSLLERRIDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R T ARQ V H H VNG+ V+I S EGDVIEV +KS+ A E + Sbjct: 92 VVFRLGLANTRRQARQLVRHGHFTVNGKRVDIPSALVHEGDVIEVAEKSRASAFFKELKE 151 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ + N+ T R P +++ PV Q +VE YS+ Sbjct: 152 SSNALSAPAWLTADQANLTGTVTRFPHR-EEIDVPVNEQA--IVELYSK 197 >gi|290487060|gb|ADD29914.1| ribosomal protein S4 [Antirrhinum majus] Length = 201 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPKA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D+I K QKS+ L + L +S +VP Y++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRTLIQNSLNSS--PHEEVPNYLTLHPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|302533389|ref|ZP_07285731.1| ribosomal protein S4 [Streptomyces sp. C] gi|302442284|gb|EFL14100.1| ribosomal protein S4 [Streptomyces sp. C] Length = 203 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Y DISE Sbjct: 7 KVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRAQY-DISE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A ++ G T L+ LE RLD +V RA TI+ ARQ V H H+ VNG Sbjct: 65 RQMARAYDRAKKAEGKTGEALVVELERRLDALVLRAGIARTIYQARQMVVHGHIEVNGGK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 V+ S+R + DVI V+++S++ E E + P Y+ VN + R P+ Sbjct: 125 VDKPSFRVRPDDVITVRERSREKHPFQVAREGGYAGEGETPRYLQVNLKALAFRLDRDPN 184 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 K++ PVI LVVE+Y+R Sbjct: 185 R-KEI--PVICDEQLVVEYYAR 203 >gi|11465958|ref|NP_054500.1| ribosomal protein S4 [Nicotiana tabacum] gi|78102536|ref|YP_358677.1| ribosomal protein S4 [Nicotiana sylvestris] gi|133960|sp|P06359|RR4_TOBAC RecName: Full=30S ribosomal protein S4, chloroplastic gi|90101663|sp|Q3C1H5|RR4_NICSY RecName: Full=30S ribosomal protein S4, chloroplastic gi|11834|emb|CAA77354.1| ribosomal protein S4 [Nicotiana tabacum] gi|77799563|dbj|BAE46652.1| ribosomal protein S4 [Nicotiana sylvestris] gi|225202|prf||1211235AG ribosomal protein S4 Length = 201 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P N G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKPRN----GSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I K QKS+ L + L++S ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSS--PHEELPNHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|302550146|ref|ZP_07302488.1| ribosomal protein S4 [Streptomyces viridochromogenes DSM 40736] gi|302467764|gb|EFL30857.1| ribosomal protein S4 [Streptomyces viridochromogenes DSM 40736] Length = 204 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 112/209 (53%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A + +G T LI LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERASKVQGKTGEALIIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--LASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG+ V+ S+R + DV++V+ +SK+ L ++ A + + P Y+ VN + Sbjct: 119 IAVNGKKVDKPSFRVRPDDVVQVRDRSKEKTLFTIAREGGFAPDGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|238928129|ref|ZP_04659889.1| ribosomal protein S4 [Selenomonas flueggei ATCC 43531] gi|238884089|gb|EEQ47727.1| ribosomal protein S4 [Selenomonas flueggei ATCC 43531] Length = 197 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQL+ KQK K YG + E++FR +++A + G T NL+ LE R+D Sbjct: 33 RRTNRKVSEYGLQLKEKQKAKFIYG-VLERQFRGYYEKAKKMSGVTGENLLCLLERRMDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R T ARQ V H H VNG+ V+I S +EGDVIEV +KS+ A E + Sbjct: 92 VVFRLGLANTRRQARQLVRHGHFTVNGKRVDIPSALVREGDVIEVAEKSRSGAFFKELKE 151 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ + N+ T R P +++ PV Q +VE YS+ Sbjct: 152 SSNALSAPAWLTADQANLTGTVTRFPHR-EEIDVPVNEQA--IVELYSK 197 >gi|67035640|gb|AAY62751.1| small ribosomal protein subunit 4 [Serpotortella chenagonii] Length = 199 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R +NI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIINIPSYRCKPQDFITIKDRQKYQAMIIKNLDFSQKT 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|166092844|gb|ABY82374.1| ribosomal protein S4 [Silene zawadskii] Length = 201 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 115/215 (53%), Gaps = 25/215 (11%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN--- 171 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-ELPKHLTLDPFP 170 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + + + LVVE+YSR Sbjct: 171 YKGLINQLI------DSKWFGLKINELLVVEYYSR 199 >gi|157689550|gb|ABV65331.1| ribosomal protein S4 [Reseda lutea] Length = 195 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 104/180 (57%), Gaps = 15/180 (8%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GRDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKS+ L Sbjct: 82 EMRLDNILFRLGMSLTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVKNEQKSRTL 141 Query: 151 ASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 S AE ++P++++++ ++ +V + R LK + LVVE+YSR Sbjct: 142 IQNFLDSSAAE-ELPKHLTLHTFQYEGLVNQIIDRKCIGLK-------INELLVVEYYSR 193 >gi|22854683|gb|AAN09761.1| small ribosomal protein 4 [Bruchia flexuosa] Length = 191 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +L+ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMILKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGVVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|166092838|gb|ABY82370.1| ribosomal protein S4 [Silene littorea] Length = 201 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINKIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|74273231|gb|ABA01315.1| ribosomal protein S4 [Ancistrothyrsus sp. LBF-2005] Length = 187 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 103/181 (56%), Gaps = 16/181 (8%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSALQNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK L Sbjct: 73 EMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDLITVKDEQKSKDL 132 Query: 151 ASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYS 205 S R +P++++++ + +V + D + V +Q N LVVE+YS Sbjct: 133 IQNSLDSFPPGRKLPKHLTLDPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYS 184 Query: 206 R 206 R Sbjct: 185 R 185 >gi|67035590|gb|AAY62726.1| small ribosomal protein subunit 4 [Wilsoniella karsteniana] Length = 194 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +L+ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMILKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|297198341|ref|ZP_06915738.1| ribosomal protein S4 [Streptomyces sviceus ATCC 29083] gi|197714395|gb|EDY58429.1| ribosomal protein S4 [Streptomyces sviceus ATCC 29083] Length = 204 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQPRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A +++G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERAAKTQGKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS--KQLASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG+ V+ S+R + DV+ V+++S K L S+ A E + P Y+ VN + Sbjct: 119 IEVNGQKVDKPSFRVRPDDVVMVRERSREKTLFSIAREGGFAPEGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|156618828|ref|YP_001430110.1| ribosomal protein S4 [Cuscuta reflexa] gi|171769780|sp|A7M968|RR4_CUSRE RecName: Full=Plastid 30S ribosomal protein S4 gi|156556013|emb|CAM98396.1| ribosomal protein S4 [Cuscuta reflexa] Length = 201 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P R L Q R K S++ ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPRTVRD----LRNQSRSGKKSHYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ S + A +++G T LI LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLISYVRIARKAKGSTGEVLIQLLEMRLDNILFRLGMAYTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K K K A + + + R ++P +++++ A + Sbjct: 116 ILVNGHIVDIPSYRCKPRDIITSKDKPKSGALIKNSIKAFPREELPNHLTLH----PAPY 171 Query: 180 VRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + D + V ++ N LVVE+YSR Sbjct: 172 KGLINQIIDTKW-VGLKINELLVVEYYSR 199 >gi|33411992|emb|CAD86726.1| ribosomal protein small subunit 4 [Brachydontium trichodes] Length = 185 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTLNSLEKKGLINQI---LNHESIGLKINELLVVEYYSR 183 >gi|67035586|gb|AAY62724.1| small ribosomal protein subunit 4 [Bruchia drummondii] Length = 195 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +L+ +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMILKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 153 KVPNHLTFNSLEKKGVVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|67035588|gb|AAY62725.1| small ribosomal protein subunit 4 [Trematodon longicollis] Length = 199 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +L+ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDQQKSQAMILKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGVVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|77019195|emb|CAH60203.1| chloroplast 30S ribosomal protein S4 [Grimmia pilifera] Length = 199 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMTPTIPGARQLVNHRHILVNNRIVNIASYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 197 >gi|190361237|gb|ACE76923.1| ribosomal protein small subunit 4 [Polyphlebium borbonicum] Length = 155 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 31/173 (17%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L+AKQK++ YG ++E++ + A R++G T L+ LE RLDTIVY+ Sbjct: 2 KISQFCVRLQAKQKLRFNYG-LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDTIVYQL 60 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN VNI SYRCK D+I +K + QL + Sbjct: 61 GMAPTIPAARQLVNHRHILVNNHIVNIPSYRCKPKDLITLKSR-----------QLLTKK 109 Query: 164 VPEYISVNHD----------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ + N +A I ++ ++ LVVE+YSR Sbjct: 110 RPDHLTVSSEGGERPKEGLVNAIANRESIELNINEL---------LVVEYYSR 153 >gi|89112921|gb|ABD61079.1| ribosomal protein subunit 4 [Campylostelium strictum] Length = 172 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K K A +++ +++D Sbjct: 70 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFINIKDGQKSQAMIIKNVDFSQKD 129 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLEKKGLVNQI---LNHESVGLKINELLVVEYYSR 170 >gi|14090472|gb|AAK53521.1| small ribosomal protein 4 [Fissidens philonotulus] Length = 182 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ L+++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVNLSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP Y++ N +I L + + LVVE+YSR Sbjct: 140 KVPNYLTFNFFEKRGFVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|146261589|gb|ABQ15104.1| ribosomal protein S4 [Saxifraga stolonifera] Length = 186 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK DVI K QKS+ L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKSRDVITAKDEQKSRTL 132 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + L++S +VP+Y++++ P K + +I + LVV Sbjct: 133 IQNSLDSS--PHEEVPKYLTLH-----------PLQYKGLVNQIIDNKWVGLKINELLVV 179 Query: 202 EFYSR 206 E+YSR Sbjct: 180 EYYSR 184 >gi|33411996|emb|CAD86744.1| ribosomal protein small subunit 4 [Amphidium lapponicum] Length = 187 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVDFSQKS 144 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 145 KIPNHLSFNSLEKKGLVNKI---LDQESIGLKINELLVVEYYSR 185 >gi|29833389|ref|NP_828023.1| 30S ribosomal protein S4 [Streptomyces avermitilis MA-4680] gi|41017832|sp|Q827S7|RS4_STRAW RecName: Full=30S ribosomal protein S4 gi|29610512|dbj|BAC74558.1| putative ribosomal protein S4 [Streptomyces avermitilis MA-4680] Length = 204 Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A +++G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERAAKTQGKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--LASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG+ V+ S+R K DV+ V+++S+Q L V A + + P Y+ VN + Sbjct: 119 IEVNGQKVDKPSFRVKPDDVVMVRERSRQKPLFEVAREGGFAPDGETPRYLQVNLRALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|297588221|ref|ZP_06946865.1| 30S ribosomal protein S4 [Finegoldia magna ATCC 53516] gi|297574910|gb|EFH93630.1| 30S ribosomal protein S4 [Finegoldia magna ATCC 53516] Length = 198 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 12/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K RR+G N+ G PK+ + G GL R K + +G+QL KQ+++ Sbjct: 1 MARMMGPRFKQSRRLGLNVCGHPKA---NKRMGKGLG--RNDKKLTEYGMQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEA-DRSRGDTSHN-LISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YYG ++EK+ F++A + G T+ + ++ LE+RLD +V RA F +I ARQ V+H Sbjct: 56 YYG-VNEKQMHKYFEKALNNKEGLTTGDVMVRQLETRLDNLVLRASFASSIRQARQMVSH 114 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 + VNG+ V+I SY+ EG VIE+K+KS+ E + YI +N T Sbjct: 115 GLIRVNGKKVDIPSYQVAEGSVIELKEKSRSNELFKENYETNFAQSLPYID-KEENFKVT 173 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + +L+VE YSR Sbjct: 174 LTRLPERQE---IPIEITDSLIVELYSR 198 >gi|11228650|gb|AAG33110.1| small ribosomal protein 4 [Kiaeria blyttii] Length = 190 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|153012223|ref|YP_001381738.1| ribosomal protein S4 [Medicago truncatula] Length = 201 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKGP----TVGSELKNQSRSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K + K + + + A R+ +P +++++ Sbjct: 116 VLVNGRIVDIPSYRCKPEDIITAKDEQKSRTLIQNSLESAPREKLPIHLTLDPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 176 NQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|67035572|gb|AAY62717.1| small ribosomal protein subunit 4 [Hymenolomopsis tolucensis] Length = 196 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 154 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|28194737|gb|AAO33630.1|AF480985_1 ribosomal protein S4 [Oreoweisia erosa] Length = 196 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 154 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|74273245|gb|ABA01322.1| ribosomal protein S4 [Paropsia guineensis] Length = 178 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 6 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRLAGKAKGSTGQVLLQLL 64 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K + Sbjct: 65 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSIVL 124 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V L++S + ++P++++++ +I S K V + LVVE+YSR Sbjct: 125 VQNSLDSS--PQEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 176 >gi|166092893|gb|ABY82406.1| ribosomal protein S4 [Petrocoptis pyrenaica] Length = 201 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINKIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|67035560|gb|AAY62711.1| small ribosomal protein subunit 4 [Tristichium mirabile] Length = 199 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVEFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|67035574|gb|AAY62718.1| small ribosomal protein subunit 4 [Oreoweisia laxifolia] Length = 199 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|77019207|emb|CAH60211.1| chloroplast 30S ribosomal protein S4 [Dryptodon torquatus] Length = 187 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + L+L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRLRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 185 >gi|289065091|ref|YP_003433977.1| ribosomal protein S4 [Typha latifolia] gi|69216110|gb|AAZ03893.1| ribosomal protein S4 [Typha latifolia] gi|281371774|gb|ADA63701.1| ribosomal protein S4 [Typha latifolia] Length = 201 Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I K QKSK L AS A ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDNQKSKGLIQNSIASA-AHEELPKHLTIDSFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 YKGVVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|166092878|gb|ABY82396.1| ribosomal protein S4 [Silene atocioides] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQARSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINKIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|3914849|sp|O20219|RR4_GLAMU RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292882|emb|CAA92553.1| ribosomal protein S4 [Gladiolus murielae] Length = 195 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 6/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS + ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 193 >gi|160415788|gb|ABX39201.1| small ribosomal protein 4 [Grimmia mollis] Length = 188 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|33413227|emb|CAD86749.1| ribosomal protein small subunit 4 [Oreoweisia erosa] Length = 191 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|166092884|gb|ABY82400.1| ribosomal protein S4 [Eudianthe laeta] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLXMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 NHRH+LVNGR V+I SYRCK D I K + K + + L+ ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTIXAKDEQKSRTLIQKCIDLSPPEELPKHLTLDPFPY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 172 KGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|161784194|ref|YP_001595510.1| ribosomal protein S4 [Lemna minor] gi|88696772|gb|ABD48497.1| ribosomal protein S4 [Lemna minor] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I K Q+SK L S E +VP++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDIISTKDNQRSKALIQNNMTSSPPE-EVPKHLTLDSIQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 SKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|83416498|gb|ABC18269.1| small ribosomal subunit protein 4 [Amphidium mougeotii] Length = 200 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVDFSQKS 157 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 158 KVPNHLTFNSLEKKGLVNKI---LDQESIGLKINELLVVEYYSR 198 >gi|77019167|emb|CAH60189.1| chloroplast 30S ribosomal protein S4 [Grimmia elongata] Length = 181 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 79 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNMDFSQKY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 139 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 179 >gi|305672291|gb|ADM63569.1| ribosomal protein S4 [Scaevola auriculata] Length = 170 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 84/130 (64%), Gaps = 4/130 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + +L+ KQK++ +YG ++E++ + A +++G+T L+ LE RLD I++R Sbjct: 27 KKSLYCTRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGETGQVLLQLLEMRLDNILFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAE 161 PT+ ARQ VNH+H+LVNGR VNI SYRCK D IE + QKS+ L A+ L E Sbjct: 86 GMAPTLPGARQLVNHKHILVNGRIVNIPSYRCKPRDTIEARDDQKSRALIQKNLAAYLGE 145 Query: 162 RDVPEYISVN 171 +VP+++++ Sbjct: 146 -EVPDHLTIQ 154 >gi|3914850|sp|O20221|RR4_GLAPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292884|emb|CAA92554.1| ribosomal protein S4 [Gladiolus papilio] Length = 197 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 6/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS + ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 193 >gi|166092861|gb|ABY82385.1| ribosomal protein S4 [Silene sordida] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTIMAKDEQKSRALIKNFLDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|326200283|gb|ADZ52322.1| ribosomal protein S4 [Asclepias syriaca] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 19/176 (10%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD Sbjct: 35 QSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDN 93 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R TI AARQFVNHRH+LVNG V+I SYRCK GD+I VK + K A + ++ Sbjct: 94 ILFRLGMASTIPAARQFVNHRHILVNGHIVDIPSYRCKPGDIITVKDEQKSKALIQKSLD 153 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 S +H + + + P K + +I ++ LVVE+YSR Sbjct: 154 ----------SSSHQELPSHLILQPFQYKGLVNQIIDSKWVGLKIKELLVVEYYSR 199 >gi|157689418|gb|ABV65265.1| ribosomal protein S4 [Batis maritima] Length = 193 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 17/178 (9%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 24 LRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 82 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-S 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKS+ L + Sbjct: 83 LDNILFRLGMSLTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVKDEQKSRALVHT 142 Query: 153 VLEASQLAERDVPEYISV---NHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S A ++P+++++ ++ V + R SLK + LVVE+YSR Sbjct: 143 FLDSS--AHEELPKHLTLQTFQYEGFVNQIIDRKSVSLK-------INELLVVEYYSR 191 >gi|11228641|gb|AAG33106.1| small ribosomal protein 4 [Ditrichum pallidum] Length = 187 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 144 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 145 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 185 >gi|193237702|dbj|BAG50112.1| ribosomal protein S4 protein [Takakia lepidozioides] gi|193237719|dbj|BAG50128.1| ribosomal protein S4 protein [Takakia lepidozioides] Length = 202 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G K+P + Y ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRVIRRLGALPGLTNKTPQSKSGY---INQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-VTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVN R+VNI S+RCK D I K + K A + ++ SQ +E +P ++++N Sbjct: 117 ILVNDRTVNIPSFRCKPQDFITTKDRQKSQAVITKNMDCSQKSE--MPNHLTLNSSQKRG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 175 LVNQI---IDRESIGLKINELLVVEYYSR 200 >gi|301167516|emb|CBW27099.1| 30S ribosomal protein S4 [Bacteriovorax marinus SJ] Length = 208 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 12/205 (5%) Query: 7 SKHKIDRRIGENLWGRPKS-PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 ++ KI R +G L G K+ + R YGPG+HG RRK K S + ++L+ KQK+ +YG + Sbjct: 9 ARFKIQRALGLELPGLGKAGALERRPYGPGVHGNRRK-KISDYAVRLKEKQKLVYHYG-L 66 Query: 66 SEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 EK+ S K+A +++ L+S LESRL+ +++R + P++ AA Q V H V VN Sbjct: 67 REKQLVSYVKQAKKNQTKPWMETLLSTLESRLNNVIFRLNWAPSMAAASQMVAHGQVQVN 126 Query: 125 GRSVNIGSYRCKEGDVIEVKQK--SKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVR 181 G+ V+ S+ K+GDVI + K + QL S +E+ ++A VP ++ D T + Sbjct: 127 GKKVDKSSFIVKKGDVITLSDKGYANQLYKSSVESPRMA--TVPACYNIEADKKKGTMID 184 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P D+P+ Q LV+E+Y + Sbjct: 185 LPLP-SDIPFEFEQQ--LVIEYYWK 206 >gi|166092881|gb|ABY82398.1| ribosomal protein S4 [Heliosperma alpestre] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 113/211 (53%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 NHRH+LVNGR V+I SYRCK D I K + K A + L+ ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFLDLSPPEELPKHLTLDPFPY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 172 KGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|124112120|ref|YP_001019095.1| ribosomal protein S4 [Chlorokybus atmophyticus] gi|152060548|sp|Q19VA6|RR4_CHLAT RecName: Full=30S ribosomal protein S4, chloroplastic gi|124012227|gb|ABD62252.2| ribosomal protein S4 [Chlorokybus atmophyticus] Length = 203 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G+ L G + + R G++ K + S + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKIVRRLGD-LPG-FTNKIQKRQASTQNKGKKTAKKRLSQYSIRLQEKQKLR 58 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++ ++A R +G T L+ LE RLD I+YR PTI ARQ VNH Sbjct: 59 YNYG-VTERQLLLYVRKARRIKGSTGQILLQQLEMRLDNIIYRLGMAPTIANARQLVNHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H++VN R V I SYRCK D+I V+ S + ++ +P ++S +++VA Sbjct: 118 HIVVNDRIVTIPSYRCKPKDIISVRNNSTSRNVITNNLSFSDSRLPPHLSFKKESLVA-- 175 Query: 180 VRIPSSLKDVPY-PVIMQPNLVVEFYSR 206 + + L D + P+ + LVVE+YSR Sbjct: 176 --LVNGLVDRQWIPLNINELLVVEYYSR 201 >gi|77019163|emb|CAH60187.1| chloroplast 30S ribosomal protein S4 [Grimmia donniana] Length = 182 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|81301567|ref|YP_398864.1| ribosomal protein S4 [Nicotiana tomentosiformis] gi|90101664|sp|Q33C33|RR4_NICTO RecName: Full=30S ribosomal protein S4, chloroplastic gi|80750926|dbj|BAE48002.1| ribosomal protein S4 [Nicotiana tomentosiformis] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K QKSK L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSKAL 147 Query: 151 ASV-LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P +++++ +I S K V + LVVE+YSR Sbjct: 148 IQISLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|304438388|ref|ZP_07398329.1| 30S ribosomal protein S4 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368754|gb|EFM22438.1| 30S ribosomal protein S4 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 197 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +GLQL+ KQK K YG + E++FR +++A + G T NL+ LE R+D Sbjct: 33 RRTNRKVSEYGLQLKEKQKAKFIYG-VLERQFRGYYEKAKKMSGVTGENLLCLLERRMDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +V+R T ARQ V H H VNG+ V+I S EGDVIEV +KS+ A E + Sbjct: 92 VVFRLGLANTRRQARQLVRHGHFTVNGKRVDIPSALVHEGDVIEVAEKSRSGAFFKELKE 151 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ + N+ T R P +++ PV Q +VE YS+ Sbjct: 152 SSNALSAPAWLTADQANLTGTVTRFPHR-EEIDVPVNEQA--IVELYSK 197 >gi|322719571|gb|ADX07722.1| small ribosomal protein subunit 4 [Grimmia elongata] Length = 198 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMNFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|77019169|emb|CAH60190.1| chloroplast 30S ribosomal protein S4 [Grimmia funalis] Length = 180 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 78 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 178 >gi|254935397|gb|ACT88086.1| ribosomal protein S4 [Pseudopanax crassifolius] Length = 181 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEXKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR VBI SYRCK D+I + + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVBIASYRCKPRDIITARDEEN---- 123 Query: 153 VLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + + Y+ S +HD + P K + +I + LVVE+ Sbjct: 124 -------SRTLIQNYLDSSSHDELPKHLTLRPFQYKGLVNQIIDSKWVGLKINELLVVEY 176 Query: 204 YSR 206 YSR Sbjct: 177 YSR 179 >gi|184127967|gb|ACC67883.1| ribosomal protein small subunit 4 [Marattia squamosa] Length = 199 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 154 QIPEHLTLSSLEDNKTQGFVNRIVTRDSIGLNI--NELLVVEYYSR 197 >gi|77019141|emb|CAH60271.1| chloroplast 30S ribosomal protein S4 [Grimmia mollis] Length = 177 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 75 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 135 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 175 >gi|114329748|ref|YP_740567.1| ribosomal protein S4 [Platanus occidentalis] gi|122166033|sp|Q09G44|RR4_PLAOC RecName: Full=30S ribosomal protein S4, chloroplastic gi|114054386|gb|ABI49780.1| ribosomal protein S4 [Platanus occidentalis] Length = 201 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKSP----KAGSDLRNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + QKS+ L + L++S + ++P+++++ H Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSS--SHEELPKHLTL-HSFQYK 172 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 V + + D + V +Q N LVVE+YSR Sbjct: 173 GLV---NQIIDSKW-VGLQINELLVVEYYSR 199 >gi|14090478|gb|AAK53524.1| small ribosomal protein 4 [Amphidium californicum] Length = 182 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVDFSQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKKGLVNKI---LDQESIGLKINELLVVEYYSR 180 >gi|297155790|gb|ADI05502.1| 30S ribosomal protein S4 [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 105/209 (50%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + TR Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFETRPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRARKAEGKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNGR V+ S+R + DV+ V+++S+ E + + P Y+ V N++A Sbjct: 119 IEVNGRKVDKPSFRVRPDDVVMVRERSRDKHPFQVAREGGYALDGETPRYLQV---NLLA 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+ PVI LVVE+Y+R Sbjct: 176 LAFRLDRDPNRKEIPVICDEQLVVEYYAR 204 >gi|17154471|emb|CAC83794.1| ribosomal protein S4 [Anomatheca laxa] Length = 183 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 4/145 (2%) Query: 29 TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL 88 TRS G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L Sbjct: 19 TRS-GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQIL 76 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQK 146 + LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+ Sbjct: 77 LQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQR 136 Query: 147 SKQLASVLEASQLAERDVPEYISVN 171 SK L AS + ++P +++++ Sbjct: 137 SKALIQNFIASSPHQEELPNHLTID 161 >gi|254383598|ref|ZP_04998948.1| 30S ribosomal protein S4 [Streptomyces sp. Mg1] gi|194342493|gb|EDX23459.1| 30S ribosomal protein S4 [Streptomyces sp. Mg1] Length = 203 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Y DISE Sbjct: 7 KVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRAQY-DISE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H+ VNG Sbjct: 65 RQMARAYDRAKKAEGKTGEALVVELERRLDALVLRSGIARTIYQARQMVVHGHIEVNGDK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 V+ S+R + DVI V+++S++ E E + P Y+ VN + R P+ Sbjct: 125 VDKPSFRVRPDDVITVRERSREKVPFQVAREGGYAGEGETPRYLQVNLKALAFRLDRDPN 184 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 K++ PVI LVVE+Y+R Sbjct: 185 R-KEI--PVICDEQLVVEYYAR 203 >gi|305672351|gb|ADM63599.1| ribosomal protein S4 [Helwingia sp. Peng et al. 17408] Length = 173 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K +A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSIAM 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P +++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTLH 158 >gi|166092872|gb|ABY82392.1| ribosomal protein S4 [Silene schafta] Length = 201 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D I K QKS+ L + L++S E +P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFLDSSPPDE--LPKHLTLDPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 PYKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|67035694|gb|AAY62778.1| small ribosomal protein subunit 4 [Ptychomitriopsis aloinoides] Length = 196 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 5/194 (2%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 RI L P T+ ++ K S + ++L KQK++ +YG I+E++ + Sbjct: 5 RIIRRLGALPGLTNKTQLKSSSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNY 63 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD +++R PTI ARQ +NHRH+LVN R VNI SY Sbjct: 64 VRIARKAKGSTGQVLLQLLEMRLDNVIFRLSMAPTIPGARQLINHRHILVNNRIVNIPSY 123 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 RCK D I +K + K A V++ +++ VP +++ N +I L Sbjct: 124 RCKPQDFITIKARQKSQAMVIKNVDFSQKYKVPNHLTFNSLEKKGLVNQI---LDHKSIG 180 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 181 LKINELLVVEYYSR 194 >gi|67035704|gb|AAY62783.1| small ribosomal protein subunit 4 [Schistidium apocarpum] Length = 194 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLENKGLINQI---LNHESIGLKINELLVVEYYSR 192 >gi|116010533|emb|CAL38870.1| ribosomal protein S4 [Saxifraga rotundifolia] Length = 194 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 102/185 (55%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K + + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQPRSGKRTQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK DVI K QKSK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDVITAKDEQKSKTL 140 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + L++S +VP+Y++++ P K V +I + LVV Sbjct: 141 IQNSLDSS--PHEEVPKYLTLH-----------PFQYKGVVNQIIDNKWVGLKINELLVV 187 Query: 202 EFYSR 206 E+YSR Sbjct: 188 EYYSR 192 >gi|194132117|gb|ACF33371.1| ribosomal protein S4 [Gonystylus bancanus] Length = 201 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 115/211 (54%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTSKRARVGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYGLI-ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I VK + K +A + L++S ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIISVKDEQKSIALIQNYLDSS--THEELPKHLTLH----TL 169 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 170 QYKGLVNQIIDRKW-VGLKINELLVVEYYSR 199 >gi|157689578|gb|ABV65345.1| ribosomal protein S4 [Tropaeolum majus] Length = 186 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 107/181 (59%), Gaps = 17/181 (9%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ +NHRH+LVNGR V+I SYRCK D+I V+ QKS+ L Sbjct: 73 EMRLDNILFRLGMALTIPQARQLINHRHILVNGRIVDIPSYRCKSRDIITVRNEQKSRAL 132 Query: 151 -ASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYS 205 + L++S A ++P++++++ ++ +V + R LK + LVVE+YS Sbjct: 133 IQNFLDSS--AHEELPKHLTLHTFQYEGLVNQIIDRKWVGLK-------INELLVVEYYS 183 Query: 206 R 206 R Sbjct: 184 R 184 >gi|322719567|gb|ADX07720.1| small ribosomal protein subunit 4 [Schistidium rivulare] Length = 198 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|302561720|ref|ZP_07314062.1| 30S ribosomal protein S4 [Streptomyces griseoflavus Tu4000] gi|302479338|gb|EFL42431.1| 30S ribosomal protein S4 [Streptomyces griseoflavus Tu4000] Length = 204 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 114/209 (54%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ ++ A ++ T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQLVRAYERAAKTSMKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--LASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG+ V+ S+R + DV++V+++SK+ L ++ A + ++P Y+ VN ++ Sbjct: 119 IQVNGKKVDKPSFRVRPDDVVQVRERSKEKTLFTIAREGGFAPDGEIPRYLQVNLKSLAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|322719555|gb|ADX07714.1| small ribosomal protein subunit 4 [Schistidium apocarpum] gi|322719557|gb|ADX07715.1| small ribosomal protein subunit 4 [Schistidium apocarpum] Length = 198 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMNFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|189095326|ref|YP_001936339.1| 30S ribosomal protein S4 [Heterosigma akashiwo] gi|157694669|gb|ABV65945.1| 30S ribosomal protein S4 [Heterosigma akashiwo] gi|157777900|gb|ABV70086.1| 30S ribosomal protein S4 [Heterosigma akashiwo] Length = 199 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 16/210 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G L G ++ + R PG HG+ K K + L+L KQK+K Sbjct: 1 MSRYRGPRVKILRRLGP-LSGLTQNGESIRKRSPGQHGKIIGKQKIGPYNLRLLEKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++EK+ + K+A R +G T L+ LE RLDT+ +R + +I A+RQ VNH Sbjct: 60 YNYG-VTEKQLLNYVKKARRIKGATGLQLLQMLEMRLDTVAFRLGWGNSIPASRQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLEASQLAERDVPEYISVNHDNMV 176 H+LVN R VNI S+ CK GD + +K+K +KQ+ S A P+++ ++ + Sbjct: 119 HILVNDRKVNIPSFICKPGDKLTLKEKIATNKQIIS-------ANSTYPKFLELDKSKIN 171 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S +D + + + L+VE+YSR Sbjct: 172 GIVKEIVSR-ED--FTISVDELLIVEYYSR 198 >gi|74273233|gb|ABA01316.1| ribosomal protein S4 [Barteria fistulosa] Length = 186 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRLAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 73 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRAL 132 Query: 153 V---LEASQLAERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + L++S + ++P+++++ ++ +V + D + V ++ N LVVE+Y Sbjct: 133 IQNSLDSS--PQEELPKHLTLQPFQYNGLVNQII-------DSKW-VGLKINELLVVEYY 182 Query: 205 SR 206 SR Sbjct: 183 SR 184 >gi|67035568|gb|AAY62715.1| small ribosomal protein subunit 4 [Cnestrum alpestre] Length = 198 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 156 KVPNHLTFNSLEKQGLVNQI---LDQELIGLKINELLVVEYYSR 196 >gi|3914861|sp|O20278|RR4_PILTE RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292984|emb|CAA92558.1| ribosomal protein S4 [Pillansia templemannii] Length = 195 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 6/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS + ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNFIASYPHQEELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 193 >gi|75755661|ref|YP_319767.1| ribosomal protein S4 [Acorus calamus] gi|161622312|ref|YP_001586184.1| ribosomal protein S4 [Acorus americanus] gi|90101657|sp|Q3V532|RR4_ACOCL RecName: Full=30S ribosomal protein S4, chloroplastic gi|69216102|gb|AAZ03889.1| ribosomal protein S4 [Acorus americanus] gi|74381711|emb|CAI53796.1| ribosomal protein S4 [Acorus calamus] gi|160369855|gb|ABX38746.1| ribosomal protein S4 [Acorus americanus] Length = 201 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 29 GSDLRNQFRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I K KQ + Sbjct: 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITT--KDKQRSK 145 Query: 153 VLEASQL---AERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 VL + + ++P++++++ H +V + D + V ++ N LVVE+Y Sbjct: 146 VLIQNNMDSSTREELPKHLTLDSFQHKGLVNQII-------DSKW-VGLKINELLVVEYY 197 Query: 205 SR 206 SR Sbjct: 198 SR 199 >gi|3914857|sp|O20255|RR4_LAPNE RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292923|emb|CAA92542.1| ribosomal protein S4 [Lapeirousia neglecta] Length = 183 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPQQEELPNHLTID 161 >gi|14090464|gb|AAK53517.1| small ribosomal protein 4 [Hypodontium dregei] Length = 182 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKYQAMIIKNLDFSQKT 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|322719559|gb|ADX07716.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719561|gb|ADX07717.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719563|gb|ADX07718.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719565|gb|ADX07719.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719569|gb|ADX07721.1| small ribosomal protein subunit 4 [Schistidium apocarpum] gi|323404242|gb|ADX62375.1| small ribosomal protein subunit 4 [Schistidium trichodon] gi|323404244|gb|ADX62376.1| small ribosomal protein subunit 4 [Schistidium trichodon] gi|323404248|gb|ADX62378.1| small ribosomal protein subunit 4 [Schistidium trichodon var. nutans] Length = 198 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|315320559|ref|YP_004072616.1| 30S ribosomal protein S4 [Thalassiosira oceanica CCMP1005] gi|283569032|gb|ADB27569.1| 30S ribosomal protein S4 [Thalassiosira oceanica CCMP1005] Length = 205 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 6/150 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR---KSKPSYFGLQLRAKQK 57 MS+ K +I RR+G+ L G + + ++ PG HG+ K K + +GL+L KQK Sbjct: 1 MSRYRGPKLRITRRLGK-LPGLTQK-TSKKTARPGQHGKTLGDGKKKTTEYGLRLEEKQK 58 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K YG I+E + KEA R +G T L+ LE RLDTI + F PTI AARQ VN Sbjct: 59 LKFNYG-ITESQLYHYIKEARRRKGVTGLILLQLLEMRLDTICFSLGFAPTIAAARQIVN 117 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 H H+ VN + V+I S++C+ DVI VK KS Sbjct: 118 HGHITVNNKVVDIPSFQCQINDVIGVKAKS 147 >gi|67035710|gb|AAY62786.1| small ribosomal protein subunit 4 [Saelania glaucescens] Length = 194 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A V++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMVIKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 192 >gi|160415784|gb|ABX39199.1| small ribosomal protein 4 [Grimmia caespiticia] Length = 188 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|14276328|gb|AAK58202.1| small ribosomal protein 4 [Schistostega pennata] Length = 190 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ + + Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSHAMIMKNVDFSRKA 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNSLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|89112957|gb|ABD61097.1| ribosomal protein subunit 4 [Grimmia incurva] gi|89112963|gb|ABD61100.1| ribosomal protein subunit 4 [Grimmia funalis] Length = 172 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|67035570|gb|AAY62716.1| small ribosomal protein subunit 4 [Cynodontium strumiferum] Length = 199 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKQGLVNQI---LDQELIGLKINELLVVEYYSR 197 >gi|12330512|gb|AAG52793.1| ribosomal protein 4 [Pleuridium subulatum] Length = 189 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKNRQKSQAMIIKNIDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|108773272|ref|YP_635720.1| ribosomal protein S4 [Chara vulgaris] gi|122231313|sp|Q1ACM7|RR4_CHAVU RecName: Full=30S ribosomal protein S4, chloroplastic gi|77157928|gb|ABA61969.1| ribosomal protein S4 [Chara vulgaris] Length = 206 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 20/215 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS--YGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ + KI RR+G L G + ++S G K S + ++L KQK+ Sbjct: 1 MSRYRGPRLKIVRRLGP-LPGFTQKLYKSKSQYLGSSTTSSSSNKKISQYNIRLLEKQKL 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YYG ++E++ A ++G T L+ LE RLD IV+R PTI AARQ VNH Sbjct: 60 RFYYG-LTERQLLKYVTIARNAKGPTGQVLLQLLEMRLDNIVFRLGMAPTIPAARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLAERDVPEYISVN---HDN 174 RH+LVN +VNI SY CK GD I V+++ + ++ ++Q A VP ++++N ++ Sbjct: 119 RHILVNDFTVNIPSYSCKLGDKISVQKRFESKTNIFANSTQSASLKVPSHLTLNPAKNEG 178 Query: 175 MVATFVR---IPSSLKDVPYPVIMQPNLVVEFYSR 206 +V V I + + ++ LVVE+YSR Sbjct: 179 LVHQIVDREFIGAKINEL---------LVVEYYSR 204 >gi|33413235|emb|CAD86753.1| ribosomal protein small subunit 4 [Hypodontium pomiforme] Length = 185 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKYQAMIIKNLDFSQKT 142 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNFLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|322719533|gb|ADX07703.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719535|gb|ADX07704.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719537|gb|ADX07705.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719539|gb|ADX07706.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719541|gb|ADX07707.1| small ribosomal protein subunit 4 [Grimmia pilifera] Length = 198 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|305672265|gb|ADM63556.1| ribosomal protein S4 [Patrinia triloba] Length = 173 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSGLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q S+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 151 -ASVLEASQLAERDVPEYISV 170 + L++S +++P+++++ Sbjct: 139 IQNYLDSS--PHKELPKHLTL 157 >gi|184127943|gb|ACC67871.1| ribosomal protein small subunit 4 [Marattia laevis] Length = 199 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQPNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 154 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 197 >gi|157689438|gb|ABV65275.1| ribosomal protein S4 [Carica papaya] Length = 177 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 17/181 (9%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 5 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 63 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I VK QKS+ L Sbjct: 64 EMRLDNILFRMGMALTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDTITVKDEQKSRAL 123 Query: 151 -ASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYS 205 S L++S ++P +++++ ++ +V + R LK + LVVE+YS Sbjct: 124 IQSFLDSS--THEELPNHLTLHTFQYEGLVNQIIDRKWVGLK-------INELLVVEYYS 174 Query: 206 R 206 R Sbjct: 175 R 175 >gi|108796850|ref|YP_636392.1| ribosomal protein S4 [Staurastrum punctulatum] gi|90101670|sp|Q32RY4|RR4_STAPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|61393618|gb|AAX45759.1| ribosomal protein S4 [Staurastrum punctulatum] Length = 212 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 30/223 (13%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP-----VNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+ L G SP VNT+S +RK K Y ++L K Sbjct: 1 MSRYRGPRLKIIRRLNTPLPGLTSSPIVNSTVNTKS--------QRKDKSEY-RIRLEEK 51 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG I+E++ + A R++G T L+ LE RLD I++R PTI AARQ Sbjct: 52 QKLRFHYG-ITERQLLRYVRLARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPAARQL 110 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAE-----RD---- 163 VNH HVLVN R V+I S+RCK + I ++ +++ A V L SQ ++ RD Sbjct: 111 VNHGHVLVNERVVDIPSFRCKPQENISIRDRARSRALVDKNLNNSQESKKLSPSRDFLSK 170 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ +N N A+ ++ + V + LVVE+YSR Sbjct: 171 VPTHLRINTKNYKASVNQV---VNRNSIGVKVNELLVVEYYSR 210 >gi|32401812|gb|AAP80894.1| small ribosomal protein 4 [Saxifraga stolonifera] Length = 184 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/142 (42%), Positives = 88/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK DVI K QKS+ L Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKSRDVITAKDEQKSRTL 130 Query: 151 -ASVLEASQLAERDVPEYISVN 171 + L++S +VP+Y++++ Sbjct: 131 IQNSLDSS--PHEEVPKYLTLH 150 >gi|25166523|dbj|BAC24713.1| rpsD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 225 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS------YGPGLHGQRRKSKPSYFGLQLRA 54 M+K K K+ RR G +L+ KS V + PG HG RR S+ S +G+QLR Sbjct: 20 MAKYLGPKLKLSRREGTDLF--LKSGVRAIESKCKIDHLPGQHGSRR-SRLSDYGIQLRE 76 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ Y I E++F+ +K+A R +G+T NL+ LESRLD +VYR F T +RQ Sbjct: 77 KQKLRRMYV-ILERQFKKYYKKAVRMKGNTGENLLILLESRLDNVVYRMGFGSTRLESRQ 135 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 ++H+ +++N + +NI SY+ K D IEVK+ +K+ + + A +++E R+ +I V+ Sbjct: 136 LISHKSIIINKKVINIPSYQIKPNDCIEVKEIAKKQSRIKAAIEISEQREKQSWIDVDRV 195 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F + P D+ + +L++E YS+ Sbjct: 196 KMQGIFKKFPDR-SDLSSEI--NEHLIIELYSK 225 >gi|146261585|gb|ABQ15102.1| ribosomal protein S4 [Ribes americanum] Length = 187 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 15 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I K QKS+ L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITAKDDQKSRAL 133 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S ++P+Y++++ + + + + D + V ++ N LVVE+YSR Sbjct: 134 IQNYLDSS--PHEELPKYLTLHP----LQYKGLVNQIIDTEW-VGLKINELLVVEYYSR 185 >gi|11228662|gb|AAG33116.1| small ribosomal protein 4 [Pleuridium acuminatum] gi|33413217|emb|CAD86743.1| ribosomal protein small subunit 4 [Pleuridium acuminatum] Length = 190 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKNRQKSQAMIIKNIDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|77019193|emb|CAH60202.1| chloroplast 30S ribosomal protein S4 [Grimmia ovalis] Length = 191 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 189 >gi|160415802|gb|ABX39208.1| small ribosomal protein 4 [Codriophorus aquaticus] Length = 188 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|260893345|ref|YP_003239442.1| ribosomal protein S4 [Ammonifex degensii KC4] gi|260865486|gb|ACX52592.1| ribosomal protein S4 [Ammonifex degensii KC4] Length = 208 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 119/214 (55%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R+Y PG HG+ R+ K + + +QLR Sbjct: 1 MARYTGPRCRLCRREGIKLYLKGDRCYTSKCALERRNYPPGQHGRVRR-KMTEYAMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ F +A+R +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKAKRIYG-VLEAQFRNYFAQAERQKGLTGENLLRLLERRLDNVVYRLGMAASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H+LVNGR V+I SY + GD I +SK+ + E + A+ + P ++ + + Sbjct: 119 LVRHGHILVNGRRVDIPSYLVEVGDKISFDPRSKESPRIQELLERAAQNNPPPWLRYDPN 178 Query: 174 NMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + + P+ + DVP ++ +L+VE YSR Sbjct: 179 EAIGEVLAFPTRDQIDVP----VKEHLIVELYSR 208 >gi|167391807|ref|YP_001671685.1| ribosomal protein S4 [Carica papaya] gi|166344134|gb|ABY86784.1| ribosomal protein S4 [Carica papaya] Length = 201 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 17/181 (9%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I VK QKS+ L Sbjct: 88 EMRLDNILFRMGMALTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDTITVKDEQKSRAL 147 Query: 151 -ASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYS 205 S L++S ++P +++++ ++ +V + R LK + LVVE+YS Sbjct: 148 IQSFLDSS--THEELPNHLTLHTFQYEGLVNQIIDRKWVGLK-------INELLVVEYYS 198 Query: 206 R 206 R Sbjct: 199 R 199 >gi|157689476|gb|ABV65294.1| ribosomal protein S4 [Ficus sp. Moore 315] Length = 201 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQLRPGKKSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V+ QKSK L Sbjct: 88 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDEQKSKSL 147 Query: 151 A-SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P++++++ + +I S K V + LVVE+YSR Sbjct: 148 VQNYLDSS--SREELPKHLTLHPFQYKGSVNQIIDS-KCVGLKI--NELLVVEYYSR 199 >gi|67035664|gb|AAY62763.1| small ribosomal protein subunit 4 [Trichodon cylindricus] Length = 194 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVNFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLENKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|67035702|gb|AAY62782.1| small ribosomal protein subunit 4 [Grimmia plagiopodia] gi|77019165|emb|CAH60188.1| chloroplast 30S ribosomal protein S4 [Grimmia elatior] gi|77019179|emb|CAH60195.1| chloroplast 30S ribosomal protein S4 [Grimmia laevigata] Length = 195 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 193 >gi|166092875|gb|ABY82394.1| ribosomal protein S4 [Silene aegyptiaca] Length = 201 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINKIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|305672321|gb|ADM63584.1| ribosomal protein S4 [Gonocaryum litorale] Length = 173 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I V+ + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|161347492|ref|NP_871570.2| 30S ribosomal protein S4 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|152031677|sp|Q8D1Y9|RS4_WIGBR RecName: Full=30S ribosomal protein S4 Length = 206 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 124/213 (58%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS------YGPGLHGQRRKSKPSYFGLQLRA 54 M+K K K+ RR G +L+ KS V + PG HG RR S+ S +G+QLR Sbjct: 1 MAKYLGPKLKLSRREGTDLF--LKSGVRAIESKCKIDHLPGQHGSRR-SRLSDYGIQLRE 57 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ Y I E++F+ +K+A R +G+T NL+ LESRLD +VYR F T +RQ Sbjct: 58 KQKLRRMYV-ILERQFKKYYKKAVRMKGNTGENLLILLESRLDNVVYRMGFGSTRLESRQ 116 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 ++H+ +++N + +NI SY+ K D IEVK+ +K+ + + A +++E R+ +I V+ Sbjct: 117 LISHKSIIINKKVINIPSYQIKPNDCIEVKEIAKKQSRIKAAIEISEQREKQSWIDVDRV 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F + P D+ + +L++E YS+ Sbjct: 177 KMQGIFKKFPDR-SDLSSEI--NEHLIIELYSK 206 >gi|32879551|emb|CAE11886.1| ribosomal protein S4 [Crocosmia mathewsiana] Length = 180 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 19 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 77 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 78 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKAL 137 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 138 IQNFIASSPHQEELPNHLTID 158 >gi|160415812|gb|ABX39213.1| small ribosomal protein 4 [Schistidium sp. RHM-2007] gi|160415814|gb|ABX39214.1| small ribosomal protein 4 [Schistidium papillosum] Length = 188 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|33413183|emb|CAD86728.1| ribosomal protein small subunit 4 [Nanobryum dummeri] Length = 194 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ L+++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKDRQKSQAMIIKNINLSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|20531113|gb|AAM27377.1| ribosomal protein 4 [Grimmia laevigata] Length = 194 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 192 >gi|33413165|emb|CAD86719.1| ribosomal protein small subunit 4 [Grimmia mollis] Length = 176 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 74 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 134 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 174 >gi|17154712|emb|CAC83910.1| ribosomal protein S4 [Tritonia disticha] Length = 175 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 133 IQNFIASSPHQEELPNHLTID 153 >gi|313885082|ref|ZP_07818834.1| ribosomal protein S4 [Eremococcus coleocola ACS-139-V-Col8] gi|312619773|gb|EFR31210.1| ribosomal protein S4 [Eremococcus coleocola ACS-139-V-Col8] Length = 201 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L K ++ R Y PG HG R K + +G QL KQK++ Sbjct: 1 MARYTGPAWKKSRRLGISLTETGKE-LSRRPYAPGQHGNAR-HKVTEYGAQLNEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LE+RLD +VYR + T ARQ V H H Sbjct: 59 MYG-LNERQFRTLFTKAAKMEGKHGENFMVILETRLDNLVYRLGYASTRRQARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K VI ++++S+ LA + E + + +++S + +N Sbjct: 118 ITVDGQRVDIPSYLVKPEQVIGLRERSQDLAIIKENLEAVVSRL-DFVSFDENNKEGKMT 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y++ Sbjct: 177 RLPERGE---LSAEIDEALVVEYYNK 199 >gi|300088170|ref|YP_003758692.1| 30S ribosomal protein S4 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527903|gb|ADJ26371.1| ribosomal protein S4 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 207 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 14/186 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK P GP L RR S G QLR KQK++ YG + E++FR +F +A+R Sbjct: 35 RPKPP------GPQLGRPRRLSDR---GTQLREKQKIRYTYG-VLERQFRRVFADAERLA 84 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T N I LE RLD +VYR + ARQ V H H+ VNGR ++I SY KE D I Sbjct: 85 GVTGDNFIVLLERRLDNVVYRLGLADSRAQARQLVRHGHITVNGRKLDIPSYLVKESDEI 144 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +++S++ ++ E + VP+++SV+ +V +P+ D+ + Q Sbjct: 145 TFREQSRKTGYYKRVVEVIETKVVPDWLSVDRKTLVCKVSSLPTP-GDLEQKLDAQA--A 201 Query: 201 VEFYSR 206 VE+YSR Sbjct: 202 VEYYSR 207 >gi|297195512|ref|ZP_06912910.1| 30S ribosomal protein S4 [Streptomyces pristinaespiralis ATCC 25486] gi|197722128|gb|EDY66036.1| 30S ribosomal protein S4 [Streptomyces pristinaespiralis ATCC 25486] Length = 204 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISEK+ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISEKQMARAYDRARKAEGKTGEALVVELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG V+ S+R + DV+ V+++S++ E A+ + P Y+ VN + Sbjct: 119 IEVNGGKVDKPSFRVRPDDVVMVRERSREKTLFQVAREGGFAADGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P K+V PVI LVVE+Y+R Sbjct: 179 RLDRDPQR-KEV--PVICDEQLVVEYYAR 204 >gi|160415792|gb|ABX39203.1| small ribosomal protein 4 [Dryptodon torquatus] Length = 188 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|33413187|emb|CAD86730.1| ribosomal protein small subunit 4 [Dicranella palustris] Length = 187 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 145 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 185 >gi|3914843|sp|O20103|RR4_CROSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292829|emb|CAA92534.1| ribosomal protein S4 [Crocosmia sp. 'Lejeune 1997'] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|262400804|gb|ACY66293.1| ribosomal protein S4 [Brassica napus] Length = 201 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN---HDN 174 +LVNGR V+I SYRCK D+I VK Q S+ L ++LE+S A ++P +++++ ++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLESS--APEELPNHLTLHTFQYEG 173 Query: 175 MVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V + R LK + LVVE+YSR Sbjct: 174 LVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|67035644|gb|AAY62753.1| small ribosomal protein subunit 4 [Hygrodicranum bolivianum] Length = 198 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMSPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 156 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|166092869|gb|ABY82390.1| ribosomal protein S4 [Silene pseudoatocion] Length = 201 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S + ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFLYSSPPD-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|184128069|gb|ACC67934.1| ribosomal protein small subunit 4 [Archangiopteris itoi] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +G++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 19 KISQYGIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 78 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 137 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++ + DN FV + + + LVVE+YSR Sbjct: 138 QIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 181 >gi|77019153|emb|CAH60182.1| chloroplast 30S ribosomal protein S4 [Grimmia caespiticia] Length = 188 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|239978418|ref|ZP_04700942.1| 30S ribosomal protein S4 [Streptomyces albus J1074] gi|291450314|ref|ZP_06589704.1| 30S ribosomal protein S4 [Streptomyces albus J1074] gi|291353263|gb|EFE80165.1| 30S ribosomal protein S4 [Streptomyces albus J1074] Length = 204 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRARKAEGKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG V+ SYR + DV+ V+++S++ E E + P Y+ VN + Sbjct: 119 IEVNGHKVDKPSYRVRPDDVVMVRERSREKHPFQVAREGGYDTEGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|3914868|sp|O36054|RR4_SPASP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293070|emb|CAA92547.1| ribosomal protein S4 [Sparaxis sp. 'Lejeune 1997'] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|89112945|gb|ABD61091.1| ribosomal protein subunit 4 [Grimmia plagiopodia] Length = 172 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDQESIGLKINELLVVEYYSR 170 >gi|77019203|emb|CAH60207.1| chloroplast 30S ribosomal protein S4 [Grimmia alpestris] Length = 184 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 82 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFNSLENKGLVNQI---LDHESIGLKINELLVVEYYSR 182 >gi|323404246|gb|ADX62377.1| small ribosomal protein subunit 4 [Schistidium liliputanum] Length = 198 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|293612040|gb|ADE48464.1| ribosomal protein 4 [Zamia vazquezii] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSINDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 VRDQQRSRAMIDKNLDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|89112953|gb|ABD61095.1| ribosomal protein subunit 4 [Grimmia crinita] Length = 172 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|3914848|sp|O20215|RR4_FRESP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292870|emb|CAA92538.1| ribosomal protein S4 [Freesia sp. 'Lejeune 1997'] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPRQEELPNHLTID 161 >gi|17154710|emb|CAC83796.1| ribosomal protein S4 [Tritoniopsis unguicularis] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|77019139|emb|CAH60176.1| chloroplast 30S ribosomal protein S4 [Grimmia cribrosa] Length = 195 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ ++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFPQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLENKGLINQI---LDHEAIGLKINELLVVEYYSR 193 >gi|3914841|sp|O19995|RR4_BABST RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292746|emb|CAA92532.1| ribosomal protein S4 [Babiana stricta] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|62288933|sp|P69639|RR4_CRONU RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288937|sp|P69643|RR4_GLACO RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288941|sp|P69647|RR4_MICJU RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292827|emb|CAA92535.1| ribosomal protein S4 [Crocus nudiflorus] gi|2292880|emb|CAA92539.1| ribosomal protein S4 [Gladiolus communis] gi|2292930|emb|CAA92544.1| ribosomal protein S4 [Micranthus junceus] gi|17154590|emb|CAC79545.1| ribosomal protein S4 [Micranthus junceus] Length = 183 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|184127937|gb|ACC67868.1| ribosomal protein small subunit 4 [Marattia laevis] Length = 181 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 12 QSASKKISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 70 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 71 IIFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQPNSQILVKKNLE 130 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 131 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 179 >gi|67035596|gb|AAY62729.1| small ribosomal protein subunit 4 [Eustichia longirostris] Length = 199 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A V++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSRAMVIKNVDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 197 >gi|77019147|emb|CAH60179.1| chloroplast 30S ribosomal protein S4 [Grimmia anodon] Length = 182 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|184127939|gb|ACC67869.1| ribosomal protein small subunit 4 [Marattia kaulfussii] Length = 194 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 25 QSASKKISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 84 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQPNSQILMKKNLE 143 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 144 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 192 >gi|77019187|emb|CAH60199.1| chloroplast 30S ribosomal protein S4 [Grimmia montana] Length = 184 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 82 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 182 >gi|160415800|gb|ABX39207.1| small ribosomal protein 4 [Ptychomitrium drummondii] Length = 188 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NH+H+LVN R VNI SYRCK D I +K + K A V++ +++ Sbjct: 86 NMAPTIPGARQLINHKHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N + +I L + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLEKKGSVNQI---LDHGSIGLKINELLVVEYYSR 186 >gi|92417453|gb|ABE76822.1| ribosomal protein subunit 4 [Dicranoweisia cirrata] Length = 198 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 156 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|22854703|gb|AAN09771.1| small ribosomal protein 4 [Distichium capillaceum] Length = 189 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIEFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 147 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|67035604|gb|AAY62733.1| small ribosomal protein subunit 4 [Campylopodium euphorocladum] Length = 199 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDCITIKDRQKSQAMITKNVDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNFLEKKGLVNQI---LDQESIDLKINELLVVEYYSR 197 >gi|33413163|emb|CAD86718.1| ribosomal protein small subunit 4 [Dryptodon torquatus] Length = 181 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 79 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 139 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 179 >gi|89112943|gb|ABD61090.1| ribosomal protein subunit 4 [Grimmia cribrosa] gi|89112955|gb|ABD61096.1| ribosomal protein subunit 4 [Grimmia ungeri] Length = 172 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|157689468|gb|ABV65290.1| ribosomal protein S4 [Elaeocarpus angustifolius] Length = 195 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G G Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSGFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRILLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 82 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 141 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S A ++P++++++ +I S K V + LVVE+YSR Sbjct: 142 IQNYLDSS--AHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 193 >gi|17154599|emb|CAC83844.1| ribosomal protein S4 [Syringodea bifucata] Length = 175 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKNQPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 133 IQNFIASSPHQEELPNHLTID 153 >gi|290487068|gb|ADD29918.1| ribosomal protein S4 [Ilex cornuta] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GNDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D+I + + K + V L++S ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITARDEQKSIVLVQNSLDSS--PHEELPKHLTLHPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|184127983|gb|ACC67891.1| ribosomal protein small subunit 4 [Marattia attenuata] Length = 188 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 19/189 (10%) Query: 34 PGLHGQRRKSKP-------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL + KSK S + ++L AKQ+++ YG ++E++ + A ++ Sbjct: 1 PGLTNKTLKSKKAQIAIDQPASKKISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKA 59 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+ Sbjct: 60 KGSTGQVLLQLLEMRLDNILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDI 119 Query: 141 IEVK-QKSKQLASVLEASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQP 197 I V+ Q + Q+ L + +PE+++++ DN FV + + + Sbjct: 120 ISVRDQTNSQILVKKNLESLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NE 177 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 178 LLVVEYYSR 186 >gi|67035738|gb|AAY62800.1| small ribosomal protein subunit 4 [Distichium capillaceum] Length = 199 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIEFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|223587846|emb|CAQ03833.1| ribosmal protein S4 [Syringodea unifolia] Length = 186 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 25 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 83 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 84 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 143 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 144 IQNFIASSPHQEELPNHLTID 164 >gi|77019201|emb|CAH60206.1| chloroplast 30S ribosomal protein S4 [Grimmia sessitana] Length = 195 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLENKGLVNQI---LDHESIGLKINELLVVEYYSR 193 >gi|77019197|emb|CAH60204.1| chloroplast 30S ribosomal protein S4 [Grimmia plagiopodia] Length = 185 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 183 >gi|160415782|gb|ABX39198.1| small ribosomal protein 4 [Dryptodon austrofunalis] Length = 188 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|305672237|gb|ADM63542.1| ribosomal protein S4 [Linnaea borealis] Length = 173 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 85/141 (60%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSGLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRMVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTL 157 >gi|202958458|dbj|BAG71117.1| ribosomal protein S4 [Petunia integrifolia] gi|202958473|dbj|BAG71118.1| ribosomal protein S4 [Petunia integrifolia subsp. inflata] gi|202958481|dbj|BAG71119.1| ribosomal protein S4 [Petunia integrifolia subsp. inflata] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDEQKSRAL 147 Query: 151 ASV-LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P +++++ +I S K V + LVVE+YSR Sbjct: 148 IQISLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|169823881|ref|YP_001691492.1| 30S ribosomal protein S4 [Finegoldia magna ATCC 29328] gi|302379778|ref|ZP_07268262.1| ribosomal protein S4 [Finegoldia magna ACS-171-V-Col3] gi|303234754|ref|ZP_07321380.1| ribosomal protein S4 [Finegoldia magna BVS033A4] gi|226699066|sp|B0RZT8|RS4_FINM2 RecName: Full=30S ribosomal protein S4 gi|167830686|dbj|BAG07602.1| 30S ribosomal protein S4 [Finegoldia magna ATCC 29328] gi|302312366|gb|EFK94363.1| ribosomal protein S4 [Finegoldia magna ACS-171-V-Col3] gi|302494095|gb|EFL53875.1| ribosomal protein S4 [Finegoldia magna BVS033A4] Length = 198 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 12/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K RR+G N+ G PK+ + G GL R K + +G+QL KQ+++ Sbjct: 1 MARMMGPRFKQSRRLGLNVCGHPKA---NKRMGKGLG--RNDKKLTEYGMQLLEKQRLRA 55 Query: 61 YYGDISEKKFRSIFKEA-DRSRGDTSHN-LISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YYG ++EK+ F++A + G T+ + ++ LE+RLD +V RA F +I ARQ V+H Sbjct: 56 YYG-VNEKQMHKYFEKALNNKEGLTTGDVMVRQLETRLDNLVLRASFASSIRQARQMVSH 114 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 + VNG+ V+I S++ EG VIE+K+KS+ E + YI +N T Sbjct: 115 GLIRVNGKKVDIPSFQVAEGSVIELKEKSRSNELFKENYETNFAQSLPYID-KEENFKVT 173 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P+ + +L+VE YSR Sbjct: 174 LTRLPERQE---IPIEITDSLIVELYSR 198 >gi|12330514|gb|AAG52794.1| ribosomal protein 4 [Archidium tenerrimum] Length = 189 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRXHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++N +I L + + + LVVE+YSR Sbjct: 147 KVPNHLTLNSLEKKGLINQI---LNNDSIGLKINELLVVEYYSR 187 >gi|67035708|gb|AAY62785.1| small ribosomal protein subunit 4 [Campylostelium angustifolium] Length = 194 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + + KPS ++L KQK++ +YG I+E++ + + A +++ Sbjct: 11 PGLTNKXPQLKPSXINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+LVN VNI SYRCK D I Sbjct: 70 GSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNNXIVNIPSYRCKPQDFI 129 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A +++ +++ VP +++ N +I L + + + LV Sbjct: 130 NIKDQQKSQAMIIKNVDFSQKYKVPNHLTFNSVEKKGLVNQI---LNNESXGLKINELLV 186 Query: 201 VEFYSR 206 VE+YSR Sbjct: 187 VEYYSR 192 >gi|222103442|gb|ACM44250.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum] Length = 202 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R VNI SYRCK D I +K + K A +++ +++ VP +++ N Sbjct: 117 ILVNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKYKVPNHLTFNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESINLKINELLVVEYYSR 200 >gi|11228631|gb|AAG33101.1| small ribosomal protein 4 [Dicranoweisia cirrata] Length = 190 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|42794691|gb|AAS45742.1| Rps4 [Satyria sp. EAP-2003] Length = 211 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK + +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKXRXHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + Q + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRQRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|33413173|emb|CAD86722.1| ribosomal protein small subunit 4 [Schistidium papillosum] Length = 182 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|77019151|emb|CAH60181.1| chloroplast 30S ribosomal protein S4 [Dryptodon austrofunalis] Length = 199 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 197 >gi|28261719|ref|NP_783234.1| ribosomal protein S4 [Atropa belladonna] gi|26399142|sp|Q8S8X2|RR4_ATRBE RecName: Full=30S ribosomal protein S4, chloroplastic gi|20068333|emb|CAC88046.1| ribosomal protein S4 [Atropa belladonna] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 147 Query: 151 ASV-LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P +++++ +I S K V + LVVE+YSR Sbjct: 148 IQISLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|156573732|gb|ABU85198.1| ribosomal protein S4 [Anethum graveolens] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T LI L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLIQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 147 Query: 153 VLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +D +P+++++ +I S K V + LVVE+YSR Sbjct: 148 IQNSFDSSSQDEMPKHLTLQPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|33413221|emb|CAD86746.1| ribosomal protein small subunit 4 [Dicranoweisia cirrata] Length = 185 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|89112941|gb|ABD61089.1| ribosomal protein subunit 4 [Grimmia calyptrata] gi|89112949|gb|ABD61093.1| ribosomal protein subunit 4 [Grimmia ovalis] gi|89112951|gb|ABD61094.1| ribosomal protein subunit 4 [Grimmia anodon] Length = 172 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|89112935|gb|ABD61086.1| ribosomal protein subunit 4 [Schistidium apocarpum] gi|89112937|gb|ABD61087.1| ribosomal protein subunit 4 [Schistidium trichodon] Length = 172 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|184127981|gb|ACC67890.1| ribosomal protein small subunit 4 [Marattia attenuata] Length = 176 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 12 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 71 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 130 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 131 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 174 >gi|89257421|gb|ABD64913.1| Chloroplast 30S ribosomal protein S4 [Brassica oleracea] Length = 201 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVN---HDN 174 +LVNGR V+I SYRCK D+I VK Q S+ L ++LE+S A ++P +++++ ++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLIQNLLESS--APEELPNHLTLHTFQYEG 173 Query: 175 MVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V + R LK + LVVE+YSR Sbjct: 174 LVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|33413233|emb|CAD86752.1| ribosomal protein small subunit 4 [Hypodontium dregei] Length = 192 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 +RR+G L GR K +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 NRRLG-TLPGRTKKKPQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 57 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE R D I++R PTI ARQ VNHRH+LVN R VNI Sbjct: 58 NYVRIARKAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRHILVNNRIVNIP 117 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 118 SYRCKPQDFITIKDRQKYQAMIIKNLDFSQKTKVPNHLTFNSLEKNGLVNQI---LDQES 174 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 IGLKINELLVVEYYSR 190 >gi|282866226|ref|ZP_06275273.1| ribosomal protein S4 [Streptomyces sp. ACTE] gi|282559010|gb|EFB64565.1| ribosomal protein S4 [Streptomyces sp. ACTE] Length = 204 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 109/211 (51%), Gaps = 12/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRARKAEGKTGEALVVELERRLDALVLRSGIAKTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNM 175 + VNG V+ S+R + DV++V+++S+ Q+A E E + P Y+ VN + Sbjct: 119 IEVNGGKVDKPSFRVRPDDVVQVRERSRSKVPFQVAR--EGGYDTEGETPRYLQVNLKAL 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 177 AFRLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|12330510|gb|AAG52792.1| ribosomal protein 4 [Ditrichum pallidum] Length = 189 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|269991304|emb|CAX12488.1| 30S ribosomal protein S4 [Fucus vesiculosus] Length = 202 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 14/201 (6%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI +++GE L G + + ++ Q++++K S + ++L KQK++ YG I+E + Sbjct: 10 KIIKKLGE-LPGLTRKAIKKKNVN-----QKKETKASAYKIRLNEKQKLRYNYG-ITESQ 62 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S KEA R +G T L+ LE RLD I++R PTI AARQ VNH HVL+N + VN Sbjct: 63 LLSYVKEARRRKGLTGFLLMQLLEMRLDNIIFRLGLAPTIPAARQIVNHGHVLINNKKVN 122 Query: 130 IGSYRCKEGDVIEVKQKSK--QLASV--LEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 I S++C+ D+I KSK L + E + L ++ ++ + ++ A + + Sbjct: 123 IPSFQCRPKDIISFSSKSKTNNLLKINSSEPNHLTDKVSTSHLEFDKQSLTAKINNLVNR 182 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 KD+ + + LV+E+YSR Sbjct: 183 -KDLRFKI--NDMLVIEYYSR 200 >gi|32401816|gb|AAP80896.1| small ribosomal protein 4 [Erigeron formosissimus] Length = 184 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRLAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 71 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRAL 130 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P ++++ +I S K V + LVVE+YSR Sbjct: 131 IQNSLDSS--PQEELPNHLTLQPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|77019145|emb|CAH60178.1| chloroplast 30S ribosomal protein S4 [Schistidium apocarpum] Length = 199 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 10/199 (5%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G P T L Q SK S + ++L KQK++ +YG I+E+ Sbjct: 7 KIIRRLG----ALPGLTNKTPQLKSSLINQSTSSKKISPYRIRLEEKQKLRFHYG-ITER 61 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 62 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRIV 121 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 122 NIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---LD 178 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 179 HESIGLKINELLVVEYYSR 197 >gi|3914865|sp|O20399|RR4_WATAN RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293114|emb|CAA92563.1| ribosomal protein S4 [Watsonia angusta] Length = 195 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 6/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E + A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTELQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS + ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 193 >gi|89112919|gb|ABD61078.1| ribosomal protein subunit 4 [Ptychomitrium sellowianum] Length = 172 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ +++ Sbjct: 70 SMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITLKARQKSQAMVIKNVDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 130 KVPNHLTFNSLEKKGLVNQI---LNHGSIGLKINELLVVEYYSR 170 >gi|47606948|gb|AAT36394.1| ribosomal protein subunit 4 [Schistostega pennata] Length = 185 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG +E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRXHYGX-TERQLLNYVRXARKAKGSTGQVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K K A +++ + + Sbjct: 83 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDXQKSHAMIMKNVDFSRKA 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|292559510|ref|YP_003540933.1| 30S ribosomal protein S4 [Phoenix dactylifera] gi|290790918|gb|ADD63173.1| 30S ribosomal protein S4 [Phoenix dactylifera] gi|294620579|gb|ADF28148.1| 30S ribosomal protein S4 [Phoenix dactylifera] Length = 201 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPKS-------GSDLKTQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASPPPE-ELPKHLTIDSFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 YKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|290487076|gb|ADD29922.1| ribosomal protein S4 [Nerium oleander] Length = 201 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/120 (46%), Positives = 76/120 (63%), Gaps = 3/120 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITVKDEQKSKAL 147 >gi|184127955|gb|ACC67877.1| ribosomal protein small subunit 4 [Marattia salicina] gi|184127961|gb|ACC67880.1| ribosomal protein small subunit 4 [Marattia sambucina] gi|184127969|gb|ACC67884.1| ribosomal protein small subunit 4 [Marattia mertensiana] gi|184127971|gb|ACC67885.1| ribosomal protein small subunit 4 [Marattia pellucida] gi|184127975|gb|ACC67887.1| ribosomal protein small subunit 4 [Marattia smithii] gi|184127991|gb|ACC67895.1| ribosomal protein small subunit 4 [Marattia fraxinea] gi|184127997|gb|ACC67898.1| ribosomal protein small subunit 4 [Marattia melanesica] gi|184127999|gb|ACC67899.1| ribosomal protein small subunit 4 [Marattia melanesica] Length = 199 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 154 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 197 >gi|139388096|ref|YP_001123288.1| ribosomal protein S4 [Barbarea verna] gi|139388912|ref|YP_001123639.1| ribosomal protein S4 [Lepidium virginicum] gi|139389098|ref|YP_001123816.1| ribosomal protein S4 [Nasturtium officinale] gi|152060546|sp|A4QKA7|RR4_BARVE RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060553|sp|A4QLA8|RR4_LEPVR RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060555|sp|A4QLT5|RR4_NASOF RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286487|dbj|BAF50112.1| ribosomal protein S4 [Barbarea verna] gi|134286842|dbj|BAF50463.1| ribosomal protein S4 [Lepidium virginicum] gi|134287021|dbj|BAF50640.1| ribosomal protein S4 [Nasturtium officinale] Length = 201 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 29/217 (13%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN-- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPNHLTLHTF 169 Query: 172 -HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 170 QYEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|305672193|gb|ADM63520.1| ribosomal protein S4 [Dipelta yunnanensis] gi|305672341|gb|ADM63594.1| ribosomal protein S4 [Kolkwitzia amabilis] gi|305672353|gb|ADM63600.1| ribosomal protein S4 [Centranthus ruber] Length = 173 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 86/141 (60%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSGLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P+++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTL 157 >gi|26399186|sp|Q9M4B9|RR4_DIPFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017364|emb|CAB92129.1| small ribosomal protein 4 [Diphyscium foliosum] Length = 202 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K++ K +++ L+++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKERQKSQGIIVKNMDLSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 200 >gi|160415810|gb|ABX39212.1| small ribosomal protein 4 [Schistidium crassipilum] Length = 188 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISPYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|184127977|gb|ACC67888.1| ribosomal protein small subunit 4 [Marattia sp. New Caledonia] Length = 194 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 89 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 148 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 149 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 192 >gi|12330458|gb|AAG52766.1| ribosomal protein 4 [Andreaeobryum macrosporum] Length = 189 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 28 KVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N R VNI SYRCK D I +K + K A + + +++ Sbjct: 87 GLAPTIPGARQLVNHRHILINNRIVNIPSYRCKPQDFITIKDRQKSRAIITKNMDCSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N + +I + + + LVVE+YSR Sbjct: 147 KIPNHLTLNSLEKKGSVNQI---IDRESLGLKINELLVVEYYSR 187 >gi|323404250|gb|ADX62379.1| small ribosomal protein subunit 4 [Grimmia cribrosa] Length = 198 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRVVNIPSYRCKSQDFITIKDRQKSQTMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|22854743|gb|AAN09791.1| small ribosomal protein 4 [Trichodontium falcatum] Length = 182 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDCITIKDRQKSQAMITKNVDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|63101097|gb|AAY33173.1| small ribosomal protein 4 [Ptychomitrium gardneri] Length = 202 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ ++ Sbjct: 100 SMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQNY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 160 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 200 >gi|184127963|gb|ACC67881.1| ribosomal protein small subunit 4 [Marattia sylvatica] gi|184127965|gb|ACC67882.1| ribosomal protein small subunit 4 [Marattia sylvatica] Length = 191 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 86 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 145 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 146 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 189 >gi|20531077|gb|AAM27360.1| ribosomal protein 4 [Diphyscium foliosum] Length = 201 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K++ K +++ L+++ Sbjct: 99 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKERQKSQGIIVKNMDLSQKY 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 159 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 199 >gi|77019211|emb|CAH60210.1| chloroplast 30S ribosomal protein S4 [Grimmia unicolor] Length = 176 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 74 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKY 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 134 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 174 >gi|157689504|gb|ABV65308.1| ribosomal protein S4 [Ixonanthes icosandra x Ixonanthes cuneata] Length = 195 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 100/179 (55%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S F ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSDLRNQSRSGKKSQFRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 82 EMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAM 141 Query: 153 VLEA-SQLAERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + ++++P+++++ + +V + D + + + L+VE+YSR Sbjct: 142 IQNSLDSFPQKELPKHLTLRPFQYKGLVNQII-------DSKWTGLKINELLIVEYYSR 193 >gi|305672259|gb|ADM63553.1| ribosomal protein S4 [Weigela hortensis] Length = 173 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSGLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRHVLVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITPRDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P+++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTL 157 >gi|89112959|gb|ABD61098.1| ribosomal protein subunit 4 [Grimmia hartmanii] Length = 172 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 70 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSSENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|77019173|emb|CAH60192.1| chloroplast 30S ribosomal protein S4 [Grimmia hartmanii] Length = 176 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 74 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFSQKY 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 134 KIPNHLTFNSSENKGLINQI---LDHESIGLKINELLVVEYYSR 174 >gi|3098152|gb|AAC15524.1| small ribosomal protein 4 [Ptychomitrium gardneri] Length = 194 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ ++ Sbjct: 92 SMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQNY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 192 >gi|118577601|gb|ABL07166.1| small ribosomal protein 4 [Piper methysticum] Length = 182 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 57 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 58 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 117 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 118 TTRNEQRSKVLVQNSMDFASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 174 Query: 201 VEFYSR 206 VE+YSR Sbjct: 175 VEYYSR 180 >gi|67035602|gb|AAY62732.1| small ribosomal protein subunit 4 [Aongstroemia jamaicensis] Length = 186 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQAMITKNVDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 144 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 184 >gi|33413171|emb|CAD86721.1| ribosomal protein small subunit 4 [Schistidium crassipilum] Length = 182 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISPYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|12642214|gb|AAK00189.1| rps4 [Bryoxiphium norvegicum] Length = 186 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 144 KVPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 184 >gi|254935399|gb|ACT88087.1| ribosomal protein S4 [Pseudopanax lessonii] gi|254935401|gb|ACT88088.1| ribosomal protein S4 [Pseudopanax lessonii] gi|254935403|gb|ACT88089.1| ribosomal protein S4 [Pseudopanax crassifolius] gi|254935405|gb|ACT88090.1| ribosomal protein S4 [Pseudopanax crassifolius] gi|254935407|gb|ACT88091.1| ribosomal protein S4 [Pseudopanax lessonii] gi|254935409|gb|ACT88092.1| ribosomal protein S4 [Pseudopanax gilliesii] gi|254935411|gb|ACT88093.1| ribosomal protein S4 [Pseudopanax ferox] gi|254935417|gb|ACT88096.1| ribosomal protein S4 [Pseudopanax chathamicus] gi|254935449|gb|ACT88112.1| ribosomal protein S4 [Pseudopanax ferox] gi|254935451|gb|ACT88113.1| ribosomal protein S4 [Pseudopanax ferox] Length = 181 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + S+ L Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 127 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + Y+ S +HD + P K + +I + LVV Sbjct: 128 -------------IQNYLDSSSHDELPKHLTLRPFQYKGLVNQIIDSKWVGLKINELLVV 174 Query: 202 EFYSR 206 E+YSR Sbjct: 175 EYYSR 179 >gi|184127959|gb|ACC67879.1| ribosomal protein small subunit 4 [Marattia salicina] Length = 189 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 84 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 143 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 144 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 187 >gi|32879557|emb|CAE11889.1| ribosomal protein S4 [Xenoscapa fistulosa] Length = 182 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 21 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 80 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKAL 139 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 140 IQNFIASSPHQGELPNHLTID 160 >gi|254935441|gb|ACT88108.1| ribosomal protein S4 [Pseudopanax discolor] Length = 181 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + S+ L Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 127 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + Y+ S +HD + P K + +I + LVV Sbjct: 128 -------------IQNYLDSSSHDELPKHLTLRPFQYKGLVNXIIDSKWVGLKINELLVV 174 Query: 202 EFYSR 206 E+YSR Sbjct: 175 EYYSR 179 >gi|11228664|gb|AAG33117.1| small ribosomal protein 4 [Ptychomitrium gardneri] Length = 191 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ ++ Sbjct: 89 SMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQNY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 189 >gi|184127985|gb|ACC67892.1| ribosomal protein small subunit 4 [Marattia howeana] Length = 184 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 20 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 79 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 138 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 139 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 182 >gi|254935413|gb|ACT88094.1| ribosomal protein S4 [Pseudopanax linearis] gi|254935443|gb|ACT88109.1| ribosomal protein S4 [Pseudopanax linearis] Length = 181 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 21/183 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEEN---- 123 Query: 153 VLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + + Y+ S +HD + P K + +I + LVVE+ Sbjct: 124 -------SRTLIQNYLDSSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEY 176 Query: 204 YSR 206 YSR Sbjct: 177 YSR 179 >gi|184127989|gb|ACC67894.1| ribosomal protein small subunit 4 [Marattia oreades] Length = 187 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 23 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ ++ V + + +D Sbjct: 82 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLEFLNKD 141 Query: 164 -VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 142 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 185 >gi|283794970|ref|YP_003359361.1| ribosomal protein S4 [Olea europaea] gi|330850745|ref|YP_004376423.1| ribosomal protein S4 [Olea europaea subsp. europaea] gi|281428689|gb|ADA69928.1| ribosomal protein S4 [Olea europaea] gi|291059255|gb|ADD72091.1| ribosomal protein S4 [Olea europaea] gi|328795435|emb|CBR30317.1| ribosomal protein S4 [Olea europaea subsp. europaea] Length = 201 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPKA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D+I K QKS+ L + L++S ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIIMTKDEQKSRTLIQNSLDSS--PHEELPNHLTLHPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|42556474|gb|AAS19832.1| small ribosomal protein 4 [Pallavicinia sp. He-Nygren 1407] Length = 191 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD IV+R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARRAKGSTGQILLQLLEMRLDNIVFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ER 162 PTI +ARQ VNHRH+L+N +VNI SY CK D+I +K + + + + + L+ E+ Sbjct: 89 GMAPTIPSARQLVNHRHILINANTVNIPSYNCKTKDIITIKNRHESQSLITKNINLSREQ 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ + + RI D + + + LVVE+YSR Sbjct: 149 RIPNHLTFDSTRFCGSVNRIT----DREWIGLKINELLVVEYYSR 189 >gi|118577559|gb|ABL07145.1| small ribosomal protein 4 [Piper amalago] Length = 180 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 4 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 55 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 56 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 115 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 116 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLV 172 Query: 201 VEFYSR 206 VE+YSR Sbjct: 173 VEYYSR 178 >gi|67035686|gb|AAY62774.1| small ribosomal protein subunit 4 [Microcampylopus leucogaster] Length = 199 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 21/172 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 97 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIAKNLEFSQ-- 154 Query: 161 ERDVPEYISVNH------DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N N + T I ++ ++ LVVE+YSR Sbjct: 155 KYKVPNHLTFNSLEKKGLVNQILTHESIGLNINEL---------LVVEYYSR 197 >gi|239939944|ref|ZP_04691881.1| 30S ribosomal protein S4 [Streptomyces roseosporus NRRL 15998] gi|239986428|ref|ZP_04707092.1| 30S ribosomal protein S4 [Streptomyces roseosporus NRRL 11379] gi|291443375|ref|ZP_06582765.1| 30S ribosomal protein S4 [Streptomyces roseosporus NRRL 15998] gi|291346322|gb|EFE73226.1| 30S ribosomal protein S4 [Streptomyces roseosporus NRRL 15998] Length = 204 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 12/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRAKKAEGKTGEALVVELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNM 175 + VNG V+ S+R + D+++V+++S+ Q+A E E + P Y+ VN + Sbjct: 119 IEVNGGKVDKPSFRVRPDDIVQVRERSRSKVPFQVAR--EGGYDTEGETPRYLQVNLKAL 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 177 AFRLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|118577635|gb|ABL07183.1| small ribosomal protein 4 [Piper wichmannii] Length = 183 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 58 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 59 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 118 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 119 TTRNEQRSKVLVQNSMDFASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|77019205|emb|CAH60208.1| chloroplast 30S ribosomal protein S4 [Grimmia tergestina] Length = 182 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDREKSQAIIVKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|118577599|gb|ABL07165.1| small ribosomal protein 4 [Piper methysticum] Length = 179 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 3 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 54 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 55 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 114 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 115 TTRNEQRSKVLVQNSMDFASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 171 Query: 201 VEFYSR 206 VE+YSR Sbjct: 172 VEYYSR 177 >gi|166092890|gb|ABY82404.1| ribosomal protein S4 [Viscaria vulgaris] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 112/211 (53%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 NHRH+LVNGR V+I SYRCK D I K + K + L+ ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRTLIKNFIDLSPPEELPKHLTLDPFPY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 172 KGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|146261557|gb|ABQ15088.1| ribosomal protein S4 [Crassula aff. perforata Fishbein 3778] Length = 169 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 98/171 (57%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 3 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 61 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I K K A + L+ Sbjct: 62 ILFRLSMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPSDIITAKDDKKSRALIQNYLD 121 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++P++++++ +I S K V + LVVE+YSR Sbjct: 122 ST--PHEELPKHLTLHSVQYKGLVNQIIDS-KGVGLKI--NELLVVEYYSR 167 >gi|67035608|gb|AAY62735.1| small ribosomal protein subunit 4 [Cladophascum gymnomitrioides] Length = 199 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMITKNVDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|77019149|emb|CAH60180.1| chloroplast 30S ribosomal protein S4 [Dryptodon anomalus] Length = 182 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQALLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSKSMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|305672219|gb|ADM63533.1| ribosomal protein S4 [Abelia x grandiflora] Length = 173 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 86/141 (60%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSGLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIIMARDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P+++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTL 157 >gi|110456606|gb|ABG74733.1| ribosomal protein S4 [Forsythia europaea] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPKA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D+I K QKS+ L + L++S ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIIMAKDEQKSRTLIQNSLDSS--PHEELPNHLTLHPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|323149084|ref|YP_004222648.1| ribosomal protein S4 [Anthriscus cerefolium] gi|289645577|gb|ADD13640.1| ribosomal protein S4 [Anthriscus cerefolium] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 98/175 (56%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQARSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 147 Query: 153 VLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +D +P+++++ +I S K V + LVVE+YSR Sbjct: 148 IQNSFDSSSQDEMPKHLTLQPFQYKGLVNKIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|74273099|gb|ABA01249.1| ribosomal protein S4 [Passiflora arborea] Length = 186 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 10 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 62 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 121 Query: 142 EVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 K + K + + L+ ++P +++++ +I S K V + LV Sbjct: 122 MTKDEQKSRTLIQNSLDLSPHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLV 178 Query: 201 VEFYSR 206 VE+YSR Sbjct: 179 VEYYSR 184 >gi|116010505|emb|CAL37359.1| ribosomal protein S4 [Fontanesia phillyreoides subsp. fortunei] Length = 194 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 81 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIIMAKDEQKSRTL 140 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P +++++ + +I S K V + LVVE+YSR Sbjct: 141 IQNSLDSS--PHEELPNHLTLHPFQYKGSVNQIIDS-KWVGLKI--NELLVVEYYSR 192 >gi|116010507|emb|CAL37360.1| ribosomal protein S4 [Fraxinus excelsior] Length = 194 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 K + K + + L+ ++P +++++ +I S K V + LV Sbjct: 130 MTKDEQKSRTLIQNSLDLSPHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLV 186 Query: 201 VEFYSR 206 VE+YSR Sbjct: 187 VEYYSR 192 >gi|254935433|gb|ACT88104.1| ribosomal protein S4 [Pseudopanax arboreus] Length = 181 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEXKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 127 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + S +HD + P K + +I + LVVE+Y Sbjct: 128 IQNSLD----------SSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYY 177 Query: 205 SR 206 SR Sbjct: 178 SR 179 >gi|184127973|gb|ACC67886.1| ribosomal protein small subunit 4 [Marattia smithii] Length = 173 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 9 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 67 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 68 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 127 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 128 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 171 >gi|32401797|gb|AAP80887.1| small ribosomal protein 4 [Platanus x acerifolia] Length = 193 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDLRNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 80 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRAL 139 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S + ++P+++++ H V + + D + V +Q N LVVE+YSR Sbjct: 140 IQNYLDSS--SHEELPKHLTL-HSFQYKGLV---NQIIDSKW-VGLQINELLVVEYYSR 191 >gi|3914862|sp|O20280|RR4_ROMRE RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292992|emb|CAA92559.1| ribosomal protein S4 [Romulea revelieri] Length = 195 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 6/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R T ARQ VNHRH+LVNGR V+I SYRCK D+I KQKSK L Sbjct: 81 EMRLDNILFRLGMASTNPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQKSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS + ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 193 >gi|222103440|gb|ACM44249.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum subsp. japonicum] Length = 198 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 156 KVPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 196 >gi|139390350|ref|YP_001122948.1| ribosomal protein S4 [Aethionema cordifolium] gi|152060542|sp|A4QJB7|RR4_AETCO RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286143|dbj|BAF49772.1| ribosomal protein S4 [Aethionema cordifolium] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN---HDN 174 +LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P++++++ ++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPKHLTLHTFQYEG 173 Query: 175 MVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V + R LK + LVVE+YSR Sbjct: 174 LVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|7109201|gb|AAF36676.1| ribosomal protein 4 [Grimmia pulvinata] Length = 196 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 94 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQSMIIKNMDFSQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 194 >gi|17154708|emb|CAC79544.1| ribosomal protein S4 [Thereianthus racemosus] Length = 183 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSVLKTQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|328881154|emb|CCA54393.1| SSU ribosomal protein S4p [Streptomyces venezuelae ATCC 10712] Length = 204 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRAKKAEGKTGEALVVELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG V+ S+R + DV+ V+++S+ E A+ + P Y+ VN + Sbjct: 119 IQVNGGKVDKPSFRVRPDDVVMVRERSRTKPLFEMAREGGFAADGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|16565380|gb|AAL26205.1|AF313604_1 small ribosomal protein 4 [Marattia werneri] Length = 193 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 19/189 (10%) Query: 34 PGLHGQRRKSKPSYFGL-------------QLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL + KSK + + +L AKQ+++ YG ++E++ + A ++ Sbjct: 6 PGLTNKTLKSKKAQIAIDQPASKKISQXCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKA 64 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+ Sbjct: 65 KGSTGQVLLQLLEMRLDNILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDI 124 Query: 141 IEVK-QKSKQLASVLEASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQP 197 I V+ Q + Q+ L + +PE+++++ DN FV + + + Sbjct: 125 ISVRDQTNSQILVKKNLESLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NE 182 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 183 LLVVEYYSR 191 >gi|26454646|sp|O47032|RR4_PROWI RecName: Full=Plastid 30S ribosomal protein S4 gi|5748666|emb|CAB53104.1| 30S ribosomal protein S4 [Prototheca wickerhamii] Length = 207 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 125/216 (57%), Gaps = 21/216 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG------QRRKSKPSYFGLQLRA 54 MS+ + I RR+GE L G K ++ PG HG ++KSK S +G++L+ Sbjct: 1 MSRYRGPRLPIIRRLGE-LPGFSKK-IDRNHTPPGQHGWKKKASDQKKSKESQYGIRLKE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ YG I+E++ + +EA R +G T L+ LE RLD I+YR F PTI AARQ Sbjct: 59 KQKLRYNYG-INERQLINYVREARRRKGSTGEVLLQLLEMRLDNIIYRLGFAPTIPAARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL-ASVLEASQLAERDVPEYISVNHD 173 +NH H+ VN +++NI SY CK D+I V + S+QL + L+ ++E + +++N + Sbjct: 118 LINHGHINVNNKNINIPSYICKINDIISVLKNSQQLIKNYLQNGGISE--LSTCLNLNKE 175 Query: 174 NMVATFVR-IPSSLKDVPYPVIMQPN--LVVEFYSR 206 + A+ IP L V ++ N LV+E+YSR Sbjct: 176 KLEASINNIIPRDL------VKLEINELLVIEYYSR 205 >gi|290487070|gb|ADD29919.1| ribosomal protein S4 [Lonicera japonica] Length = 197 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 109/209 (52%), Gaps = 17/209 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P+ GQ R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTKKGPI----------GQSRSVKKSQYRIRLEEKQKLRF 50 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 51 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 109 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + + A + L +S + +P+++++ Sbjct: 110 ILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSLNSSPHKKNKLPKHLTLQPFQYKG 169 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 LVNQIIDS-KWVGLKI--NELLVVEYYSR 195 >gi|184128025|gb|ACC67912.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 187 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 18 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 77 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 136 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + + LVVE+YSR Sbjct: 137 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGWDI--NELLVVEYYSR 185 >gi|167749411|ref|ZP_02421538.1| hypothetical protein EUBSIR_00365 [Eubacterium siraeum DSM 15702] gi|167657583|gb|EDS01713.1| hypothetical protein EUBSIR_00365 [Eubacterium siraeum DSM 15702] gi|291532117|emb|CBK97702.1| SSU ribosomal protein S4P [Eubacterium siraeum 70/3] gi|291558143|emb|CBL35260.1| SSU ribosomal protein S4P [Eubacterium siraeum V10Sc8a] Length = 198 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 95/168 (56%), Gaps = 9/168 (5%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 + K S +G+QL+ KQK+K YG + EK+F ++ A + G NLI LESRLD +V+ Sbjct: 37 RKKVSEYGMQLKEKQKLKFIYG-VLEKQFYHYYEMAVKMDGVAGENLIKILESRLDNVVF 95 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQ 158 R T ARQ V H H VNG+ V++ SYR K GDV+ V + SK + A ++E Q Sbjct: 96 RMGMAITRREARQLVTHGHFTVNGKKVDVPSYRIKPGDVVAVSETSKKSPKFAQIIE--Q 153 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R VP ++ VN + M A R + ++ Y + +L++E YS+ Sbjct: 154 TNGRIVPLWLDVNKEAMTAKVTR-EFNRDELDYEI--AEHLIIELYSK 198 >gi|77019155|emb|CAH60183.1| chloroplast 30S ribosomal protein S4 [Grimmia crinita] Length = 182 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|254935389|gb|ACT88082.1| ribosomal protein S4 [Fatsia japonica] gi|254935391|gb|ACT88083.1| ribosomal protein S4 [Raukaua anomalus] gi|254935393|gb|ACT88084.1| ribosomal protein S4 [Schefflera digitata] gi|254935421|gb|ACT88098.1| ribosomal protein S4 [Pseudopanax colensoi var. ternatus] gi|254935423|gb|ACT88099.1| ribosomal protein S4 [Pseudopanax colensoi var. ternatus] gi|254935425|gb|ACT88100.1| ribosomal protein S4 [Pseudopanax colensoi var. colensoi] gi|254935429|gb|ACT88102.1| ribosomal protein S4 [Pseudopanax laetus] gi|254935431|gb|ACT88103.1| ribosomal protein S4 [Pseudopanax macintyrei] gi|254935435|gb|ACT88105.1| ribosomal protein S4 [Pseudopanax arboreus] gi|254935437|gb|ACT88106.1| ribosomal protein S4 [Meryta sinclairii] gi|254935439|gb|ACT88107.1| ribosomal protein S4 [Meryta denhamii] gi|254935445|gb|ACT88110.1| ribosomal protein S4 [Pseudopanax colensoi var. fiordensis] gi|254935447|gb|ACT88111.1| ribosomal protein S4 [Meryta latifolia] gi|254935453|gb|ACT88114.1| ribosomal protein S4 [Pseudopanax kermadecensis] Length = 181 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 127 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + S +HD + P K + +I + LVVE+Y Sbjct: 128 IQNSLD----------SSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYY 177 Query: 205 SR 206 SR Sbjct: 178 SR 179 >gi|305672367|gb|ADM63607.1| ribosomal protein S4 [Ilex crenata] Length = 173 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K + Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSIVL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 V L++S ++P++++++ Sbjct: 139 VQNSLDSS--PHEELPKHLTLH 158 >gi|32401826|gb|AAP80901.1| small ribosomal protein 4 [Cornus kousa] Length = 184 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQKSRAL 130 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + LE+S ++P++++V+ +I S K V + LVVE+YSR Sbjct: 131 IQNSLESS--PHEELPKHLTVHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|325126867|ref|YP_004286104.1| ribosomal protein S4 [Fragaria vesca subsp. vesca] gi|324022779|gb|ADY15353.1| ribosomal protein S4 [Fragaria vesca subsp. vesca] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKP----RAGSDLRTQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR V+I SYRCK D+I V+ QKSK L S E ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVRDEQKSKALIQNYLGSSPPE-ELPKHLTLDPFQYKGL 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 175 VNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|139389420|ref|YP_001123117.1| ribosomal protein S4 [Olimarabidopsis pumila] gi|152060556|sp|A4QJT5|RR4_OLIPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286314|dbj|BAF49941.1| ribosomal protein S4 [Olimarabidopsis pumila] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 29/217 (13%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN-- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDDQNSRTLVQNLLDSS--APEELPNHLTLHTF 169 Query: 172 -HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 170 QYEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|3914867|sp|O36052|RR4_PATSQ RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292982|emb|CAA92557.1| ribosomal protein S4 [Patersonia sp. 'Lejeune 1997'] Length = 196 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 9/178 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A + +G T L+ L Sbjct: 22 GNDLKNQLRSVKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKVKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K K A Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITTKDKQKSKAL 140 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + +S + ++P +++++ + + + ++D + + + LVVE+YSR Sbjct: 141 IQNYIASSTQPQEELPNHLTIDP----FQYKGLVNQIRDSKWIGLKINELLVVEYYSR 194 >gi|227499169|ref|ZP_03929304.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904616|gb|EEH90534.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 197 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R+ K S +G+QL KQK K YG + EK+FR +++A + G NL+ LE RLD Sbjct: 33 KRQFKKKSEYGMQLAEKQKAKFIYG-VLEKQFRGYYEKAKKMEGIAGTNLLILLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-AS 157 +VYR T ARQ V H H+ VNG+ ++I S K GDV+ V + S+ A A Sbjct: 92 VVYRLGLARTRRQARQLVTHGHIAVNGKRLDIPSALVKAGDVVSVMEGSRSSAYFKGMAE 151 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 L + VP +ISV+ N+ R+P + DVP ++ L++E YS+ Sbjct: 152 TLGKSAVPAWISVDGQNLSGKVDRLPVRDEIDVP----IEEQLIIELYSK 197 >gi|149390444|ref|YP_001294272.1| ribosomal protein S4 [Illicium oligandrum] gi|172048705|sp|A6MMU6|RR4_ILLOL RecName: Full=30S ribosomal protein S4, chloroplastic gi|147917397|gb|ABQ52521.1| ribosomal protein S4 [Illicium oligandrum] Length = 203 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 124/215 (57%), Gaps = 23/215 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G +L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-SLPGLTSKRPRS-------GSDLRNQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D+I + + + A + +++SQ + ++P++++++ Sbjct: 112 NHRHILVNGRLVDIPSYRCKPRDIITTRDEHRSRALIQNSIDSSQ--KEELPKHLTLH-- 167 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++ + + + + D + V ++ N LVVE+YSR Sbjct: 168 SLQYQYKGLVNQIIDSKW-VGLKINELLVVEYYSR 201 >gi|157325532|ref|YP_001468310.1| ribosomal protein S4 [Ipomoea purpurea] gi|171769950|sp|A7Y3D8|RR4_IPOPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|157056760|gb|ABV02350.1| ribosomal protein S4 [Ipomoea purpurea] Length = 203 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 12/176 (6%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 32 LRNQSRSGKKSQYCIRLEEKQKLRFHYG-LTERQLIQYVRIARKAKGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-AS 152 LD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L + Sbjct: 91 LDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITSKDNQKSRALIQN 150 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 LE+S ++P +++++ V + + D + V ++ N LV+E+YSR Sbjct: 151 SLESS--PHEELPNHLALDPSPYYKGLV---NQIIDTKW-VGLKINEFLVIEYYSR 200 >gi|115605024|ref|YP_784475.1| ribosomal protein S4 [Piper cenocladum] gi|122164360|sp|Q06GQ8|RR4_PIPCE RecName: Full=30S ribosomal protein S4, chloroplastic gi|112253753|gb|ABI14474.1| ribosomal protein S4 [Piper cenocladum] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S + RS Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRSESSLRS-------QPRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLIRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMSSTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 NHRHVLVNGR V+I SYRCK D+I + + + V + A R ++P++++++ Sbjct: 112 NHRHVLVNGRIVDIPSYRCKPRDIISTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 172 KGVVNQIIDS-KGVGLKI--NELLVVEYYSR 199 >gi|157689486|gb|ABV65299.1| ribosomal protein S4 [Heuchera sanguinea] Length = 201 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 113/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I K QKS+ L + L++S ++P+Y++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRTLIQNYLDSS--PHEELPKYLTLHPLQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + + LVVE+YSR Sbjct: 174 LVNQI---IDNKWVGLKINELLVVEYYSR 199 >gi|118577621|gb|ABL07176.1| small ribosomal protein 4 [Piper stipulare] Length = 187 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 63 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRMVDIPSYRCKPRDII 122 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 123 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 179 Query: 201 VEFYSR 206 VE+YSR Sbjct: 180 VEYYSR 185 >gi|139387254|ref|YP_001123375.1| ribosomal protein S4 [Capsella bursa-pastoris] gi|297837951|ref|XP_002886857.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] gi|152060547|sp|A4QKJ4|RR4_CAPBU RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286575|dbj|BAF50199.1| ribosomal protein S4 [Capsella bursa-pastoris] gi|297332698|gb|EFH63116.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] Length = 201 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 29/217 (13%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN-- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPNHLTLHTF 169 Query: 172 -HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 170 QYEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|146261567|gb|ABQ15093.1| ribosomal protein S4 [Heuchera micrantha] Length = 184 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRTL 130 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + L++S ++P+Y++++ P K + +I + LVV Sbjct: 131 IQNYLDSS--PHEELPKYLTLH-----------PLQYKGLVNQIIDNKWVGLKINELLVV 177 Query: 202 EFYSR 206 E+YSR Sbjct: 178 EYYSR 182 >gi|184127987|gb|ACC67893.1| ribosomal protein small subunit 4 [Marattia oreades] Length = 174 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 10 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 68 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ ++ V + + +D Sbjct: 69 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLEFLNKD 128 Query: 164 -VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 129 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 172 >gi|89112917|gb|ABD61077.1| ribosomal protein subunit 4 [Ptychomitrium gardneri] Length = 172 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A V++ ++ Sbjct: 70 SMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQNY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 130 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 170 >gi|302541108|ref|ZP_07293450.1| ribosomal protein S4 [Streptomyces hygroscopicus ATCC 53653] gi|302458726|gb|EFL21819.1| ribosomal protein S4 [Streptomyces himastatinicus ATCC 53653] Length = 203 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Y DISE Sbjct: 7 KVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQTSDY-KVRLLEKQRLRAQY-DISE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A + G T LI LE RLD +V R+ TI+ ARQ V H H+ VNGR Sbjct: 65 RQMARAYDRARKVDGKTGEALIIELERRLDALVLRSGIARTIYQARQMVVHGHIEVNGRK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 V+ S+R + DV+ V+++S++ E + + P Y+ VN + R P+ Sbjct: 125 VDKPSFRVRPDDVVMVRERSREKHPFQVAREGGYAPDGETPRYLQVNLKALAFRLDRDPN 184 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 K+V PVI LVVE+Y+R Sbjct: 185 R-KEV--PVICDEQLVVEYYAR 203 >gi|67035642|gb|AAY62752.1| small ribosomal protein subunit 4 [Dichodontium pellucidum] Length = 190 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKNQQKSQAMIMKNLDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++ N +I L + + LVVE+YSR Sbjct: 148 KVPDHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|77019199|emb|CAH60205.1| chloroplast 30S ribosomal protein S4 [Grimmia pulvinata] Length = 195 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQSMIIKNMDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 193 >gi|184127941|gb|ACC67870.1| ribosomal protein small subunit 4 [Marattia kaulfussii] Length = 199 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQPNSQILMKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++ + DN FV + + + LVVE+YSR Sbjct: 154 QIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 197 >gi|209969095|emb|CAR92795.1| ribosomal protein S4 [Iris vorobievii] gi|209969097|emb|CAR92796.1| ribosomal protein S4 [Iris vorobievii] gi|209969099|emb|CAR92797.1| ribosomal protein S4 [Iris vorobievii] gi|209969101|emb|CAR92798.1| ribosomal protein S4 [Iris vorobievii] gi|209969103|emb|CAR92799.1| ribosomal protein S4 [Iris vorobievii] gi|209969105|emb|CAR92800.1| ribosomal protein S4 [Iris vorobievii] gi|209969107|emb|CAR92801.1| ribosomal protein S4 [Iris vorobievii] gi|209969109|emb|CAR92802.1| ribosomal protein S4 [Iris vorobievii] gi|209969111|emb|CAR92803.1| ribosomal protein S4 [Iris vorobievii] gi|209969117|emb|CAR92806.1| ribosomal protein S4 [Iris vorobievii] gi|209969119|emb|CAR92807.1| ribosomal protein S4 [Iris vorobievii] gi|209969121|emb|CAR92808.1| ribosomal protein S4 [Iris vorobievii] gi|209969123|emb|CAR92809.1| ribosomal protein S4 [Iris vorobievii] gi|209969125|emb|CAR92810.1| ribosomal protein S4 [Iris vorobievii] gi|209969127|emb|CAR92811.1| ribosomal protein S4 [Iris vorobievii] Length = 187 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 15 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 133 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 134 IQNFMASSPHE-ELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 185 >gi|157689454|gb|ABV65283.1| ribosomal protein S4 [Cornus florida] Length = 201 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQKSRAL 147 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + LE+S ++P++++V+ +I S K V + LVVE+YSR Sbjct: 148 IQNSLESS--PHEELPKHLTVHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|118577567|gb|ABL07149.1| small ribosomal protein 4 [Piper darienense] Length = 178 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 2 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 53 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 54 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKTRDII 113 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 114 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 170 Query: 201 VEFYSR 206 VE+YSR Sbjct: 171 VEYYSR 176 >gi|157689442|gb|ABV65277.1| ribosomal protein S4 [Celtis occidentalis] Length = 182 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 6/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R +K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQLRPNKKSQYRIRLEEKQKLRFHYG-LTEEQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+ VNGR V+I SYRCK D+I V+ + K+ S Sbjct: 68 EMRLDNILFRLGMASTIPQARQLVNHRHIFVNGRMVDIPSYRCKPRDIITVRDEQKKSKS 127 Query: 153 VLE--ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ A ++P++++++ + +I S K V + LVVE+YSR Sbjct: 128 MVQNYLDSSAREELPKHLTLDPFQSKGSVNQIIDS-KWVGLKI--NELLVVEYYSR 180 >gi|146261571|gb|ABQ15095.1| ribosomal protein S4 [Kalanchoe daigremontiana] Length = 186 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K A Sbjct: 73 EMRLDNILFRLSLASTIPGARQLVNHRHILVNGRIVDIPSYRCKPSDIITAKDDKKSRAL 132 Query: 153 VLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + ++P++++++ +I S K V + LVVE+YSR Sbjct: 133 IQNYIDSIPHEELPKHLTLHPFQYKGLVNQIIDS-KGVGLKI--NELLVVEYYSR 184 >gi|33413219|emb|CAD86745.1| ribosomal protein small subunit 4 [Dichodontium pellucidum] Length = 187 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKNQQKSQAMIMKNLDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++ N +I L + + LVVE+YSR Sbjct: 145 KVPDHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 185 >gi|297840979|ref|XP_002888371.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] gi|297334212|gb|EFH64630.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] Length = 201 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 29/217 (13%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRLKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN-- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPNHLTLHTF 169 Query: 172 -HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 170 QYEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|160415780|gb|ABX39197.1| small ribosomal protein 4 [Dryptodon anomalus] Length = 188 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSKSMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|116010497|emb|CAL37355.1| ribosomal protein S4 [Scrophularia vernalis] Length = 194 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 105/188 (55%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L +S +VP +++++ +I S K V + Sbjct: 130 MAKDEQKSRTLIQNSLNSS--PHEEVPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 184 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 185 LVVEYYSR 192 >gi|17154597|emb|CAC83837.1| ribosomal protein S4 [Ixia latifolia] Length = 183 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG +++++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKKSQYRIRLEKKQKLRFHYG-LTKRQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|305672319|gb|ADM63583.1| ribosomal protein S4 [Mackinlaya confusa] Length = 173 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ YYG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQPRSGKKSQYRIRLEEKQKLRFYYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ +NHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLINHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSLDSSSHDELPKHLTLH 158 >gi|94502225|ref|ZP_01308711.1| 30S ribosomal protein S4 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833841|ref|YP_001598037.1| 30S ribosomal subunit protein S4 [Candidatus Sulcia muelleri GWSS] gi|172048400|sp|A8Z690|RS4_SULMW RecName: Full=30S ribosomal protein S4 gi|94451196|gb|EAT14135.1| 30S ribosomal protein S4 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206331|gb|ABS30641.1| 30S ribosomal subunit protein S4 [Candidatus Sulcia muelleri GWSS] Length = 195 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 11/206 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE ++G+ + Y PG + R K +++ QL KQK+K Sbjct: 1 MARYIGPKTKISRKFGELIYGKTNKSFEKKKYPPG-NSSSRNIKKTFYSTQLLEKQKIKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++F +F +A + +G L+ ESRLD IVYR + ARQ V+HRH Sbjct: 60 TYG-ILERQFLKMFYKASKKKGIKGEILLQLCESRLDNIVYRLNLSHSRPEARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI S+ K GD I +K+K K A+ ++L D ++S +++ M+ F Sbjct: 119 ITVNGKIVNIPSFNLKPGDKISLKEKHKHKAN---KNKLLGSD---WLSWDNEKMIGIFK 172 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP+ + + L+VE YS+ Sbjct: 173 YIPNRNQITEN---INEKLIVELYSK 195 >gi|42794708|gb|AAS45749.1| Rps4 [Themistoclesia epiphytica] Length = 211 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 114/215 (53%), Gaps = 17/215 (7%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ + K RR+G L + P N+R + K S + ++L+ KQK+ Sbjct: 1 MSRYRGPRFKKKRRLGALPGLTNKKPKPGNSRR----TQSRXXXXKKSQYHIRLQEKQKL 56 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH Sbjct: 57 RFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNH 115 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEYISVN 171 RHVLVNGR ++I SYRCK D+I ++KS+ L L + + + VP ++++N Sbjct: 116 RHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSHKGKRKRVPYHLTLN 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I ++ K V + + LVVE+YSR Sbjct: 176 RGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|67035598|gb|AAY62730.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum] Length = 202 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 160 KVPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 200 >gi|67035580|gb|AAY62721.1| small ribosomal protein subunit 4 [Oncophorus wahlenbergii] Length = 194 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GLAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|77019159|emb|CAH60185.1| chloroplast 30S ribosomal protein S4 [Dryptodon decipiens] Length = 184 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 82 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 182 >gi|323148908|ref|YP_004222463.1| ribosomal protein S4 [Smilax china] gi|308742599|gb|ADO33450.1| ribosomal protein S4 [Smilax china] Length = 201 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKS-------GSDLKNQLRSRKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I K Q+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGRVVDIPSYRCKPQDIITPKDEQRSKALIQNYIASSPRE-ELPKHLTIDSFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 YKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|33413215|emb|CAD86742.1| ribosomal protein small subunit 4 [Ditrichum pusillum] Length = 190 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+L+N R VNI SYRCK D I +K + K A + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILINDRIVNIPSYRCKPQDFITIKDRQKSRAMISKNVDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|305672279|gb|ADM63563.1| ribosomal protein S4 [Abrophyllum ornans] gi|305672287|gb|ADM63567.1| ribosomal protein S4 [Carpodetus sp. Johns 9563] Length = 173 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTITARDEQKSRAL 138 Query: 153 VLEASQLAER-DVPEYISVN 171 + + + R ++P +++++ Sbjct: 139 IQNSLDSSPREELPNHLTLH 158 >gi|52220812|ref|YP_086968.1| ribosomal protein S4 [Panax ginseng] gi|62287232|sp|Q68S04|RR4_PANGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|51235315|gb|AAT98511.1| ribosomal protein S4 [Panax ginseng] Length = 201 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 88 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 147 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + S +HD + P K + +I + LVVE+Y Sbjct: 148 IQNSLD----------SSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYY 197 Query: 205 SR 206 SR Sbjct: 198 SR 199 >gi|308189877|ref|YP_003922808.1| 30S ribosomal protein S4 [Mycoplasma fermentans JER] gi|307624619|gb|ADN68924.1| 30S ribosomal protein S4 [Mycoplasma fermentans JER] Length = 198 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 11/199 (5%) Query: 10 KIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K RR G ++ G+ S R+Y PG HG +R K S +GL L KQK+K YG ++E Sbjct: 9 KKSRRYGFSILETGKEFSKGRKRTYAPGQHGDKR-VKLSDYGLHLYEKQKVKYLYG-LNE 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ + A + +G T L+ LESRLD +VYRA F T ARQ V+H H +NG Sbjct: 67 KQMHKYYIRATKIKGVTGTVLLQLLESRLDNLVYRAGFASTRRQARQLVSHGHFTLNGHK 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I S + G I++K+KS Q ++EA+ L +R +++++ ++ R+P + Sbjct: 127 ADIPSMNVEVGSKIQLKEKS-QKNKIIEAN-LKDRSAAKWLTIK--GFEVSYDRLPD--R 180 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +P I + N +VEFYS+ Sbjct: 181 SELHPEI-KENFIVEFYSK 198 >gi|239932411|ref|ZP_04689364.1| 30S ribosomal protein S4 [Streptomyces ghanaensis ATCC 14672] gi|291440777|ref|ZP_06580167.1| 30S ribosomal protein S4 [Streptomyces ghanaensis ATCC 14672] gi|291343672|gb|EFE70628.1| 30S ribosomal protein S4 [Streptomyces ghanaensis ATCC 14672] Length = 204 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 12/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A ++ T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DVSERQLVRAYERAAKTTMKTGDALVIELERRLDALVLRSGIARTIYQARQMVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNM 175 + VNG+ V+ S+R + DV++V+ +SK Q+A E + + P Y+ VN + Sbjct: 119 IQVNGKKVDKPSFRVRPDDVVQVRDRSKDKTLFQIAR--EGGFAPDGETPRYLQVNLKAL 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVEFY+R Sbjct: 177 AFRLDREPNR-KEI--PVICDEQLVVEFYAR 204 >gi|157689546|gb|ABV65329.1| ribosomal protein S4 [Quercus nigra] Length = 202 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R SK S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSSKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I + + K A + + RD +P++++ + Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDIITARDEQKYRALIKNCLDSSPRDEELPKHLTFHPFQ 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 172 YKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 200 >gi|116010499|emb|CAL37356.1| ribosomal protein S4 [Buddleja davidii] Length = 194 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L +S +VP +++++ +I S K + + Sbjct: 130 TAKDEQKSRTLIQNSLNSS--PHEEVPNHLTLHPFQYKGLVNQIIDS-KWIGLKI--NEL 184 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 185 LVVEYYSR 192 >gi|12330488|gb|AAG52781.1| ribosomal protein 4 [Oedipodium griffithianum] Length = 189 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + + KP Y + ++L KQK++ +YG I+E++ + + A ++ Sbjct: 6 PGLTNKTSQLKPGYINQSVSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARGAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI SYRCK D I Sbjct: 65 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFI 124 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + +++ +P +++ N +I L + + LV Sbjct: 125 TIKDRQKSQAIIAKNMDFSQKYKIPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLV 181 Query: 201 VEFYSR 206 VE+YSR Sbjct: 182 VEYYSR 187 >gi|67035678|gb|AAY62770.1| small ribosomal protein subunit 4 [Cladopodanthus speciosus] Length = 199 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFIPIKNQQKSQSIIAKNIEFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++++ +I L + + M LVVE+YSR Sbjct: 157 KVPNHLTLDSLEKKGLVNQI---LNNESIGLKMNELLVVEYYSR 197 >gi|11228617|gb|AAG33094.1| small ribosomal protein 4 [Bryoxiphium norvegicum] Length = 191 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 189 >gi|67035562|gb|AAY62712.1| small ribosomal protein subunit 4 [Pseudephemerum nitidum] Length = 194 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKDRQKSQAMISKNIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|305672365|gb|ADM63606.1| ribosomal protein S4 [Cardiopteris moluccana] Length = 173 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|209969129|emb|CAR92812.1| ribosomal protein S4 [Iris mandshurica] gi|209969131|emb|CAR92813.1| ribosomal protein S4 [Iris mandshurica] gi|209969133|emb|CAR92814.1| ribosomal protein S4 [Iris mandshurica] gi|209969135|emb|CAR92815.1| ribosomal protein S4 [Iris mandshurica] gi|209969137|emb|CAR92816.1| ribosomal protein S4 [Iris mandshurica] gi|209969139|emb|CAR92817.1| ribosomal protein S4 [Iris mandshurica] gi|209969141|emb|CAR92818.1| ribosomal protein S4 [Iris mandshurica] gi|209969143|emb|CAR92819.1| ribosomal protein S4 [Iris mandshurica] gi|209969145|emb|CAR92820.1| ribosomal protein S4 [Iris mandshurica] gi|209969147|emb|CAR92821.1| ribosomal protein S4 [Iris mandshurica] gi|209969149|emb|CAR92822.1| ribosomal protein S4 [Iris mandshurica] gi|209969151|emb|CAR92823.1| ribosomal protein S4 [Iris mandshurica] gi|209969153|emb|CAR92824.1| ribosomal protein S4 [Iris mandshurica] gi|209969155|emb|CAR92825.1| ribosomal protein S4 [Iris mandshurica] gi|209969157|emb|CAR92826.1| ribosomal protein S4 [Iris mandshurica] gi|209969159|emb|CAR92827.1| ribosomal protein S4 [Iris mandshurica] Length = 187 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 15 GSDLENQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 133 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 134 IQNFIASSPHE-ELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 185 >gi|184128037|gb|ACC67918.1| ribosomal protein small subunit 4 [Angiopteris fokiensis] Length = 189 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 20 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 79 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 138 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 139 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 187 >gi|139389644|ref|YP_001123201.1| ribosomal protein S4 [Arabis hirsuta] gi|139390154|ref|YP_001123727.1| ribosomal protein S4 [Lobularia maritima] gi|152060545|sp|A4QK20|RR4_ARAHI RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060554|sp|A4QLJ6|RR4_LOBMA RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286399|dbj|BAF50025.1| ribosomal protein S4 [Arabis hirsuta] gi|134286931|dbj|BAF50551.1| ribosomal protein S4 [Lobularia maritima] Length = 201 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN---HDN 174 +LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P +++++ ++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPNHLTLHTFQYEG 173 Query: 175 MVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V + R LK + LVVE+YSR Sbjct: 174 LVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|32879555|emb|CAE11888.1| ribosomal protein S4 [Duthiastrum linifolium] Length = 183 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 3/138 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE R Sbjct: 25 LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLLEMR 83 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASV 153 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 84 LDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKALIQN 143 Query: 154 LEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 144 FIASSPHQEELPNHLTID 161 >gi|12045167|ref|NP_072978.1| 30S ribosomal protein S4 [Mycoplasma genitalium G37] gi|255660353|ref|ZP_05405762.1| 30S ribosomal protein S4 [Mycoplasma genitalium G37] gi|1350998|sp|P47553|RS4_MYCGE RecName: Full=30S ribosomal protein S4 gi|1046011|gb|AAC71533.1| ribosomal protein S4 [Mycoplasma genitalium G37] gi|166078669|gb|ABY79287.1| ribosomal protein S4 [synthetic Mycoplasma genitalium JCVI-1.0] Length = 205 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 K S K RR+G +L K S R PG HG R R S S + QL+ KQ+M+ Sbjct: 2 KYTGSIFKRSRRLGFSLLENNKEFSKGKKRKSIPGQHGNRFRSSTLSGYAQQLQEKQRMQ 61 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I++K+FR +F+ + +G+ + NL LESRLD IVYR F PT +ARQ VNH Sbjct: 62 YMYG-ITDKQFRRLFRFVLKQKGNLTVNLFRVLESRLDNIVYRMGFAPTRKSARQMVNHG 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV++N ++V+ S GD +V+ K++ S L + + + ++ N T+ Sbjct: 121 HVILNDQTVDTPSIIINPGD--KVRLKARITKSPLVKNFIENSVISSFVETNKKAFEGTY 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R P + P + + VVE+Y R Sbjct: 179 IRFP---ERSELPAGINESYVVEWYKR 202 >gi|157689440|gb|ABV65276.1| ribosomal protein S4 [Ceanothus prostratus] Length = 191 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 19 GSDLRNQSRPGKKSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLL 77 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V+ QKS+ L Sbjct: 78 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKTRDIITVRDEQKSRAL 137 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E ++P+++++ H F+ K V + LVVE+YSR Sbjct: 138 VQNYLDSASPE-ELPKHLTL-HPFQYKGFINQIIDSKWVGLKI--NELLVVEYYSR 189 >gi|39939072|ref|NP_950838.1| 30S ribosomal protein S4 [Onion yellows phytoplasma OY-M] gi|39722181|dbj|BAD04671.1| ribosomal protein S4 and related protein [Onion yellows phytoplasma OY-M] Length = 149 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 10/157 (6%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 ++ KQK++ YG +SEK+FR F A + +G + LESRLD +VYR F T Sbjct: 1 MQEKQKLRFTYG-VSEKQFRKTFDNASKLKGIHGEMFLVLLESRLDNVVYRLGFAKTRAQ 59 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYIS 169 ARQ NH H+LV+G+ V+I SYR K G + +++KSK L V EA S+ D Y+S Sbjct: 60 ARQLANHGHILVDGKKVDIASYRLKPGQTVTLREKSKNLNIVQEAVNSKFVRAD---YVS 116 Query: 170 VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + +V +VR P + +P + L+VE+Y+R Sbjct: 117 LDKE-LVGKYVRYPQRNEFLP---DINEQLIVEYYNR 149 >gi|148377824|ref|YP_001256700.1| 30S ribosomal protein S4 [Mycoplasma agalactiae PG2] gi|148291870|emb|CAL59261.1| 30S ribosomal protein S4 [Mycoplasma agalactiae PG2] Length = 198 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 9/177 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+Y PG HG +R K S +GL L KQK++ YG ISEK+ + I+ A + +G NL+ Sbjct: 31 RTYAPGQHGNKR-VKLSDYGLHLYEKQKVRFIYG-ISEKQLQKIYARAIKMKGVAGTNLL 88 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESR D +VYRA F T ARQ V H H +NG++ +I S GDVI +K K++ Sbjct: 89 QLLESRFDNVVYRAGFATTRRQARQLVAHGHFQLNGKNADIPSMHISVGDVITLKAKTQN 148 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V A L + +++V N A R+P+ + P ++ N V+E YS+ Sbjct: 149 NNQVKAA--LESKPAAAWLTV--KNFEAKVDRLPNRSELNPN---VKENFVIEHYSK 198 >gi|33411990|emb|CAD86725.1| ribosomal protein small subunit 4 [Archidium sp. CCRU] Length = 185 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++N +I L + + + LVVE+YSR Sbjct: 143 KVPNHLTLNSLEKKGLINQI---LNNESIGLKINELLVVEYYSR 183 >gi|6002089|emb|CAA58954.1| ribosomal protein S4 [Typha angustifolia] Length = 196 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K QKSK L AS A ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDNQKSKGLIQNSIASA-AHEELPKHLTID 167 >gi|67035582|gb|AAY62722.1| small ribosomal protein subunit 4 [Oreas martiana] Length = 194 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGKVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + K A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITVKNRQKSQAMIIKNVDFSQKA 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|77019171|emb|CAH60191.1| chloroplast 30S ribosomal protein S4 [Grimmia fuscolutea] Length = 187 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 185 >gi|209969113|emb|CAR92804.1| ribosomal protein S4 [Iris vorobievii] Length = 187 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 15 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 133 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 134 IQNFMASSPHE-ELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 185 >gi|305672303|gb|ADM63575.1| ribosomal protein S4 [Columellia oblonga] Length = 173 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|225544126|ref|YP_002720114.1| rps4 [Jatropha curcas] gi|224979567|gb|ACN72694.1| rps4 [Jatropha curcas] Length = 201 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGIASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYIS---VNHDN 174 +LVNGR V+I SYRCK DVI V+ + K A + L++S + ++P++++ + + Sbjct: 116 ILVNGRIVDIPSYRCKPRDVITVRDEQKSRAMIPNYLDSS--PQEELPKHLTLHPIQYKG 173 Query: 175 MVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +V + D + + + LVVE+YSR Sbjct: 174 LVNQII-------DSKWGGLKINELLVVEYYSR 199 >gi|17154706|emb|CAC79543.1| ribosomal protein S4 [Watsonia angusta] Length = 183 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E + A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTELQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNFIASSPHQEELPNHLTID 161 >gi|6002033|emb|CAA58924.1| ribosomal protein S4 [Butomus umbellatus] Length = 196 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 19/189 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN--- 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKTLVQNSIASSSHE-ELPKHLTIDSSQ 170 Query: 172 HDNMVATFV 180 H +V + Sbjct: 171 HKGLVNQII 179 >gi|22854727|gb|AAN09783.1| small ribosomal protein 4 [Oreas martiana] Length = 185 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGKVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITVKNRQKSQAMIIKNVDFSQKA 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|81176252|ref|YP_398331.1| ribosomal protein S4 [Lactuca sativa] gi|90101661|sp|Q332X6|RR4_LACSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|78675170|dbj|BAE47596.1| chloroplast 30S ribosomal protein S4 [Lactuca sativa] gi|88656985|gb|ABD47235.1| ribosomal protein S4 [Lactuca sativa] Length = 201 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D I + QKSK L + L++S ++P ++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSKVLIQNSLDSS--PHEELPNHLTLQPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|313183995|ref|YP_004021152.1| ribosomal protein S4 [Castanea mollissima] gi|309321522|gb|ADO65062.1| ribosomal protein S4 [Castanea mollissima] Length = 202 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I + QKS+ L S + ++P++++ + Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDIITARDEQKSRALIQNCLDSSPRDEELPKHLTFHPFQ 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 172 YKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 200 >gi|184128019|gb|ACC67909.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128035|gb|ACC67917.1| ribosomal protein small subunit 4 [Angiopteris rapensis] gi|184128059|gb|ACC67929.1| ribosomal protein small subunit 4 [Angiopteris sp. China] Length = 198 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 29 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 87 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 88 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 147 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 148 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 196 >gi|139389803|ref|YP_001123464.1| ribosomal protein S4 [Crucihimalaya wallichii] gi|152060549|sp|A4QKT3|RR4_CRUWA RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286665|dbj|BAF50288.1| ribosomal protein S4 [Crucihimalaya wallichii] Length = 201 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 27/216 (12%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN--- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L L S E ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLIDSSAPE-ELPNHLTLHTFQ 170 Query: 172 HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 171 YEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|238809857|dbj|BAH69647.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 216 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 11/199 (5%) Query: 10 KIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K RR G ++ G+ S R+Y PG HG +R K S +GL L KQK+K YG ++E Sbjct: 27 KKSRRYGFSILETGKEFSKGRKRTYAPGQHGDKR-VKLSDYGLHLYEKQKVKYLYG-LNE 84 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ + A + +G T L+ LESRLD +VYRA F T ARQ V+H H +NG Sbjct: 85 KQMHKYYIRATKIKGVTGTVLLQLLESRLDNLVYRAGFASTRRQARQLVSHGHFTLNGHK 144 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I S + G I++K+KS Q ++EA+ L +R +++++ ++ R+P + Sbjct: 145 ADIPSMNVEVGSKIQLKEKS-QKNKIIEAN-LKDRSAAKWLTIK--GFEVSYDRLPD--R 198 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +P I + N +VEFYS+ Sbjct: 199 SELHPEI-KENFIVEFYSK 216 >gi|184128041|gb|ACC67920.1| ribosomal protein small subunit 4 [Angiopteris lygodiifolia] Length = 199 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 154 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 197 >gi|184128031|gb|ACC67915.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 194 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 25 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 84 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 143 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 144 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 192 >gi|89112915|gb|ABD61076.1| ribosomal protein subunit 4 [Ptychomitrium formosicum] Length = 172 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NH+H+LVN R VNI SYRCK D I +K + K A V++ +++ Sbjct: 70 SMAPTIPGARQLINHKHILVNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNIDFSQKH 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 130 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 170 >gi|313678349|ref|YP_004056089.1| 30S ribosomal protein S4 [Mycoplasma bovis PG45] gi|312950635|gb|ADR25230.1| ribosomal protein S4 [Mycoplasma bovis PG45] Length = 198 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 9/177 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+Y PG HG +R K S +GL L KQK++ YG ISEK+ + I+ A + +G NL+ Sbjct: 31 RTYAPGQHGNKR-VKLSDYGLHLYEKQKVRFIYG-ISEKQLQKIYSRAIKMKGVAGTNLL 88 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESR D +VYRA F T ARQ V H H +NG++ +I S GDVI +K K++ Sbjct: 89 QLLESRFDNVVYRAGFATTRRQARQLVAHGHFQLNGKNADIPSMHISVGDVITLKAKTQN 148 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A V A L + +++V N R+P + P ++ N V+E YS+ Sbjct: 149 NAQVKAA--LESKPAAAWLTV--KNFEVKVDRLPDRSELNPN---VKENFVIEHYSK 198 >gi|184128061|gb|ACC67930.1| ribosomal protein small subunit 4 [Angiopteris sp. China] Length = 190 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 21 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 80 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 139 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 140 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 188 >gi|157689536|gb|ABV65324.1| ribosomal protein S4 [Penaea mucronata] Length = 187 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 10/178 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R SK S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSDLRNQSRSSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 73 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQKSRAL 132 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 S + ++P++ + + +I S + V ++ N LVVE+YSR Sbjct: 133 IQNCLDSSPRDEELPKHXTFHPFQYKGLVNQIIDSKR-----VGLKINELLVVEYYSR 185 >gi|160415786|gb|ABX39200.1| small ribosomal protein 4 [Dryptodon decipiens] Length = 188 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|152031676|sp|Q7UXM6|RS4_RHOBA RecName: Full=30S ribosomal protein S4 Length = 202 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 12/210 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++ K +I+RR+G L+ + ++ R PG+H R +PS +G L KQK+ Sbjct: 1 MARYTGPKARINRRLGTMLYETAGAARAMDRRPQPPGMH--TRGRRPSNYGAALMEKQKI 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG + E++ R F+ R G+T L+ E RLD +V R F T ARQ + H Sbjct: 59 KHYYG-LGERQLRRYFENVGRKSGNTGELLLLMCERRLDNVVRRVGFTKTRPQARQGITH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS--KQLASVLEASQLAERDVPEYISVNHDNMV 176 H VNG V Y + GD+IEV+ + K L + A+ + D +++S + + + Sbjct: 118 GHFRVNGVKVTKPGYMLRAGDLIEVRGRENLKNLYRGVIAN--SPPDGLDWVSFDSETLR 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT + +P ++ D+ PV N VVEF SR Sbjct: 176 ATVLSLPGAV-DISLPV--DANSVVEFLSR 202 >gi|17154624|emb|CAC83924.1| ribosomal protein S4 [Pardanthopsis dichotoma] Length = 183 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I +YRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPAYRCKPRDIITTRNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 141 IQNXIASSPHQGELPNHLTID 161 >gi|116010509|emb|CAL37361.1| ribosomal protein S4 [Chionanthus virginicus] gi|116010511|emb|CAL37362.1| ribosomal protein S4 [Forestiera neomexicana] gi|116010513|emb|CAL37363.1| ribosomal protein S4 [Olea europaea] gi|116010515|emb|CAL37364.1| ribosomal protein S4 [Osmanthus heterophyllus] gi|116010517|emb|CAL37365.1| ribosomal protein S4 [Phillyrea angustifolia] Length = 194 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L++S ++P +++++ +I S K V + Sbjct: 130 MTKDEQKSRTLIQNSLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 184 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 185 LVVEYYSR 192 >gi|42794630|gb|AAS45714.1| Rps4 [Cavendishia bracteata] Length = 211 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKKVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|33411994|emb|CAD86769.1| ribosomal protein small subunit 4 [Bryoxiphium norvegicum subsp. japonicum] Length = 180 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|63101091|gb|AAY33170.1| small ribosomal protein 4 [Platyneuron laticostatum] Length = 202 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 160 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 200 >gi|114329970|ref|YP_740652.1| ribosomal protein S4 [Nandina domestica] gi|122165959|sp|Q09FV9|RR4_NANDO RecName: Full=30S ribosomal protein S4, chloroplastic gi|114054472|gb|ABI49865.1| ribosomal protein S4 [Nandina domestica] Length = 201 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----TPGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + QKS+ L + L++S ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSS--PHEELPKHLTLHSSQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|118577575|gb|ABL07153.1| small ribosomal protein 4 [Piper excelsum] Length = 187 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 63 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 122 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 123 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 179 Query: 201 VEFYSR 206 VE+YSR Sbjct: 180 VEYYSR 185 >gi|157689528|gb|ABV65320.1| ribosomal protein S4 [Nitraria retusa] Length = 193 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 105/179 (58%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + K A Sbjct: 80 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDDHKSRAL 139 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S E +P++++++ V+ + + + + D + V ++ N LVVE+YSR Sbjct: 140 IQTYLDSSHHEE--LPKHLTLH----VSQYKGLVNQIIDSKW-VGLKINELLVVEYYSR 191 >gi|184128055|gb|ACC67927.1| ribosomal protein small subunit 4 [Angiopteris lygodiifolia] Length = 186 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 17 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 76 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 135 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 136 SLNKDQIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 184 >gi|116010501|emb|CAL37357.1| ribosomal protein S4 [Abeliophyllum distichum] gi|116010503|emb|CAL37358.1| ribosomal protein S4 [Forsythia x intermedia] Length = 194 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L++S ++P +++++ +I S K V + Sbjct: 130 MAKDEQKSRTLIQNSLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 184 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 185 LVVEYYSR 192 >gi|118577589|gb|ABL07160.1| small ribosomal protein 4 [Piper khasianum] Length = 187 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 63 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 122 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 123 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 179 Query: 201 VEFYSR 206 VE+YSR Sbjct: 180 VEYYSR 185 >gi|118577613|gb|ABL07172.1| small ribosomal protein 4 [Piper ossanum] Length = 184 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 60 GSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 119 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 120 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|118577571|gb|ABL07151.1| small ribosomal protein 4 [Piper divaricatum] Length = 187 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 RPRSEGSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 63 GSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 122 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 123 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLV 179 Query: 201 VEFYSR 206 VE+YSR Sbjct: 180 VEYYSR 185 >gi|157689514|gb|ABV65313.1| ribosomal protein S4 [Liquidambar styraciflua] Length = 201 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 15/210 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRHQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR V+I SYRCK D+I + QKS+ L AS E ++P +++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALVQNYLASSPRE-ELPNHLTLH----LFQ 170 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 171 YKGLVNQIIDSKW-VSLKINELLVVEYYSR 199 >gi|157689434|gb|ABV65273.1| ribosomal protein S4 [Cannabis sativa] Length = 198 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 8/177 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 25 GSDLRNQLRPGKKSQYRIRLEEKQKLRFHYG-LTEEQLLKYVRIAGKAKGSTGQVLLQLL 83 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK---QKSKQ 149 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I V+ +KSK Sbjct: 84 EMRLDNILFRLGMASTIPQARQLVNHRHILVNNRMVDIPSYRCKPRDIITVRDEQKKSKS 143 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L S + E ++P+++++N + +I S K V + LVVE+YSR Sbjct: 144 LVQNYLDSSIRE-ELPKHLTLNPFQYQGSVNQIIDS-KWVGLKI--NELLVVEYYSR 196 >gi|322719573|gb|ADX07723.1| small ribosomal protein subunit 4 [Grimmia ovalis] gi|322719575|gb|ADX07724.1| small ribosomal protein subunit 4 [Grimmia ovalis] gi|322719577|gb|ADX07725.1| small ribosomal protein subunit 4 [Grimmia ovalis] gi|322719579|gb|ADX07726.1| small ribosomal protein subunit 4 [Grimmia ovalis] Length = 198 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMNFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|170516247|gb|ACB15125.1| small ribosomal protein 4 [Encephalartos gratus] Length = 187 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 5 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 63 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 64 STGQVLLQLLEMRSDNTIFRLGMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 123 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + K A + + L+++D +P +++++ +I S K + + LVV Sbjct: 124 VRDQQKSRAMIDKNIDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 180 Query: 202 EFYSR 206 E+YSR Sbjct: 181 EYYSR 185 >gi|32471308|ref|NP_864301.1| 30S ribosomal protein S4 [Rhodopirellula baltica SH 1] gi|32443149|emb|CAD71980.1| 30S ribosomal protein S4 [Rhodopirellula baltica SH 1] gi|327541734|gb|EGF28253.1| 30S ribosomal protein S4 [Rhodopirellula baltica WH47] Length = 206 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 12/210 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++ K +I+RR+G L+ + ++ R PG+H R +PS +G L KQK+ Sbjct: 5 MARYTGPKARINRRLGTMLYETAGAARAMDRRPQPPGMH--TRGRRPSNYGAALMEKQKI 62 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG + E++ R F+ R G+T L+ E RLD +V R F T ARQ + H Sbjct: 63 KHYYG-LGERQLRRYFENVGRKSGNTGELLLLMCERRLDNVVRRVGFTKTRPQARQGITH 121 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS--KQLASVLEASQLAERDVPEYISVNHDNMV 176 H VNG V Y + GD+IEV+ + K L + A+ + D +++S + + + Sbjct: 122 GHFRVNGVKVTKPGYMLRAGDLIEVRGRENLKNLYRGVIAN--SPPDGLDWVSFDSETLR 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AT + +P ++ D+ PV N VVEF SR Sbjct: 180 ATVLSLPGAV-DISLPV--DANSVVEFLSR 206 >gi|74273151|gb|ABA01275.1| ribosomal protein S4 [Passiflora microstipula] Length = 183 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 110/185 (59%), Gaps = 19/185 (10%) Query: 34 PGLHGQR--------RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTS 85 PGL +R R K S + ++L+ KQK++ +YG ++E++ + A +++G T Sbjct: 4 PGLTSKRPIVGSAFSRSGKKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTG 62 Query: 86 HNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K Sbjct: 63 QVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITAKD 122 Query: 146 KSKQLASVLEASQLA--ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVV 201 + K L V++ S L+ E+ +P++++++ + + + + + D + V ++ N LVV Sbjct: 123 EEK-LKDVIQHSFLSFPEKKLPKHLTLH----LLQYKGLVNQIIDSKW-VGLKINELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|118577587|gb|ABL07159.1| small ribosomal protein 4 [Piper kadsura] gi|118577619|gb|ABL07175.1| small ribosomal protein 4 [Piper ribesioides] Length = 185 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 61 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 120 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 121 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 177 Query: 201 VEFYSR 206 VE+YSR Sbjct: 178 VEYYSR 183 >gi|159161255|ref|YP_001542533.1| ribosomal protein S4 [Cuscuta exaltata] gi|172048131|sp|A8W3C6|RR4_CUSEX RecName: Full=Plastid 30S ribosomal protein S4 gi|158938680|gb|ABW83697.1| ribosomal protein S4 [Cuscuta exaltata] Length = 201 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 114/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P R L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPRTVRD----LRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + A +++G T LI LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLINYVRIARKAKGSTGEILIQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG V+I SYRCK D+I K K K A + + + R ++P +++++ A + Sbjct: 116 IFVNGHIVDIPSYRCKPRDIITSKDKPKSGALIKNSIEAFPREELPNHLTLHP----APY 171 Query: 180 VRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + D + V ++ N LVVE+YSR Sbjct: 172 KGLINQIIDTKW-VGLKINELLVVEYYSR 199 >gi|89112923|gb|ABD61080.1| ribosomal protein subunit 4 [Campylostelium pitardii] gi|89112925|gb|ABD61081.1| ribosomal protein subunit 4 [Campylostelium pitardii] gi|89112927|gb|ABD61082.1| ribosomal protein subunit 4 [Campylostelium pitardii] Length = 172 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNIDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L+ + + LVVE+YSR Sbjct: 130 KVPNHLTFNSLEKKGLVNQI---LQHESIGLKINELLVVEYYSR 170 >gi|22711973|ref|NP_683827.1| ribosomal protein S4 [Chaetosphaeridium globosum] gi|26399132|sp|Q8M9W2|RR4_CHAGL RecName: Full=30S ribosomal protein S4, chloroplastic gi|22416977|gb|AAM96577.1| ribosomal protein S4 [Chaetosphaeridium globosum] Length = 205 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 17/213 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR----PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + KI RR+G L G PK + RS + K K S + ++L+ KQ Sbjct: 1 MSRYRGPRIKIIRRLGI-LPGLTRKIPKKSMKLRSLSLQ---SKSKKKDSQYRIRLQEKQ 56 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG + E++ + A +++G T L+ LE RLD ++R PTI AARQ V Sbjct: 57 KLRYHYG-LHERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPAARQLV 115 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNM 175 NH H+LVNGR VNI SYRCK D I + +++ +A + + + +P ++ + Sbjct: 116 NHGHILVNGRIVNIPSYRCKPQDSITINTRTQTIALIQQNLGTTRKTKLPSHLMLRSTEN 175 Query: 176 VATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 AT +I S V ++ N LVVE+YSR Sbjct: 176 SATVKQIVSR-----QSVGLKINELLVVEYYSR 203 >gi|34500916|ref|NP_904101.1| ribosomal protein S4 [Amborella trichopoda] gi|52783274|sp|Q70Y01|RR4_AMBTC RecName: Full=30S ribosomal protein S4, chloroplastic gi|34481631|emb|CAD45109.1| ribosomal protein S4 [Amborella trichopoda] Length = 201 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 25/215 (11%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLRNQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLAERDVPEYI---SVNH 172 NHRH+LVNGR V+I SYRCK GD + ++K + A + + ++P+++ S+ + Sbjct: 112 NHRHILVNGRLVDIPSYRCKPGDFVTTREKERSRALIQNHMNSSPNEELPKHLTLYSLQY 171 Query: 173 DNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +V + D + + + LVVE+YSR Sbjct: 172 KGLVNQII-------DSKWIGLKINELLVVEYYSR 199 >gi|118577629|gb|ABL07180.1| small ribosomal protein 4 [Piper vitiense] gi|118577645|gb|ABL07188.1| small ribosomal protein 4 [Macropiper puberulum] Length = 185 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 61 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 120 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 121 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 177 Query: 201 VEFYSR 206 VE+YSR Sbjct: 178 VEYYSR 183 >gi|118577639|gb|ABL07185.1| small ribosomal protein 4 [Macropiper latifolium] Length = 182 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 57 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 58 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 117 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 118 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 174 Query: 201 VEFYSR 206 VE+YSR Sbjct: 175 VEYYSR 180 >gi|118577555|gb|ABL07143.1| small ribosomal protein 4 [Piper aduncum] Length = 179 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 3 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAK 54 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 55 GSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 114 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 115 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLV 171 Query: 201 VEFYSR 206 VE+YSR Sbjct: 172 VEYYSR 177 >gi|77019209|emb|CAH60209.1| chloroplast 30S ribosomal protein S4 [Dryptodon trichophyllus] Length = 176 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K + +++ +++ Sbjct: 74 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKDRQKSKSIIIKNMDFSQKY 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 134 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 174 >gi|118577591|gb|ABL07161.1| small ribosomal protein 4 [Piper leucophyllum] Length = 183 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAK 58 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 59 GSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 118 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 119 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|42794662|gb|AAS45728.1| Rps4 [Macleania cordifolia] Length = 211 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQXKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|22854687|gb|AAN09763.1| small ribosomal protein 4 [Chorisodontium mittenii] Length = 190 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|157689522|gb|ABV65317.1| ribosomal protein S4 [Morella cerifera] Length = 189 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R SK S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 13 RPKA-------GSDLRNQSRSSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 65 GSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDII 124 Query: 142 EVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 + + K + + L++S ++P++++++ +I S K V + Sbjct: 125 TARDEQKSIVLIQNYLDSS--PREELPKHLTLHPFQYKGLVNQIVDS-KWVGLKI--NEL 179 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 180 LVVEYYSR 187 >gi|42794699|gb|AAS45745.1| Rps4 [Sphyrospermum buxifolium] Length = 211 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|67035576|gb|AAY62719.1| small ribosomal protein subunit 4 [Eucamptodon perichaetialis] Length = 199 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNILFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNDRIINIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|49182791|gb|AAT57857.1| small ribosomal protein [Riccardia sp. Davis 151] Length = 195 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KS+ SY + L+L KQK++ ++G ++E++ A +++ Sbjct: 12 PGLTSRIPKSRSSYIDRSASSKKISQYRLRLEEKQKLRFHHG-LTERQLLKYVCIAKKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R VPTI AARQ VNHRH+L+N V+I SY CK GD+I Sbjct: 71 GSTGQFLLQLLEMRLDNTIFRLGMVPTIPAARQLVNHRHILINASMVDIPSYNCKIGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + + S+L A+ ++ +P +++ + + + R ++ + + LV Sbjct: 131 TIKNRGRNQLSLLTATSSTQKPGIPNHLTFDSVDFRGSVNR---TIDREGIDLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|293611992|gb|ADE48440.1| ribosomal protein 4 [Encephalartos bubalinus] gi|293612000|gb|ADE48444.1| ribosomal protein 4 [Encephalartos manikensis] Length = 183 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRLGMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + K A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 VRDQQKSRAMIDKNIDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|254444170|ref|ZP_05057646.1| S4 domain protein [Verrucomicrobiae bacterium DG1235] gi|198258478|gb|EDY82786.1| S4 domain protein [Verrucomicrobiae bacterium DG1235] Length = 144 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 9/148 (6%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG + EK+FR F++A +RG T + LE+RLD+IVY F T AARQFVNH H+ Sbjct: 2 YG-LMEKQFRRTFEQAKATRGVTGTIFLQLLETRLDSIVYDLGFTKTRKAARQFVNHGHI 60 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQK--SKQLAS-VLEASQLAERDVPEYISVNHDNMVAT 178 VNG+ V+I SY+ K GD IEV+ S+QLA+ +EA++L R+VP++++ D Sbjct: 61 SVNGQKVDIPSYQVKVGDEIEVRNTTSSRQLATRNMEANRL--RNVPDWLTRQDDAFRGV 118 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ + P + L+VEFYSR Sbjct: 119 VNREPTREELEPS---INEQLIVEFYSR 143 >gi|118577573|gb|ABL07152.1| small ribosomal protein 4 [Piper dominantinervium] gi|118577593|gb|ABL07162.1| small ribosomal protein 4 [Piper longum] gi|118577595|gb|ABL07163.1| small ribosomal protein 4 [Piper magnibaccum] gi|118577617|gb|ABL07174.1| small ribosomal protein 4 [Piper phuwuaense] gi|118577633|gb|ABL07182.1| small ribosomal protein 4 [Piper sp. AC013] Length = 184 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 60 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 119 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 120 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|118577563|gb|ABL07147.1| small ribosomal protein 4 [Piper retrofractum] Length = 181 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 5 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 56 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 57 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 116 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 117 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 173 Query: 201 VEFYSR 206 VE+YSR Sbjct: 174 VEYYSR 179 >gi|157689540|gb|ABV65326.1| ribosomal protein S4 [Plumbago auriculata] Length = 201 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 15/163 (9%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L KQK++ +YG I+E++ F+ A +++G T L+ LE RLD I++R PTI Sbjct: 46 IRLEEKQKLRFHYG-ITERQLLKYFRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTI 104 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPE 166 ARQ VNHRH+LVNGR V+I SYRCK D+I ++K A V L++S +P+ Sbjct: 105 PGARQLVNHRHILVNGRIVDIPSYRCKRQDIIMAREKKNSRALVQNYLDSS--PPEKLPK 162 Query: 167 YISVN---HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++++ H +V + + + + + LVVE+YSR Sbjct: 163 HLTLHPFPHKGLVNQII------DNKWFGLKINELLVVEYYSR 199 >gi|157689510|gb|ABV65311.1| ribosomal protein S4 [Leea guineensis] Length = 193 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 29/205 (14%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G KSP G L Q R K S + ++L KQK++ +YG ++E++ + Sbjct: 5 RRLGALPGLTSKSP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLN 59 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I S Sbjct: 60 YVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPS 119 Query: 133 YRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 YRCK D+I + QKS+ L + L++S + ++P++++++ P K V Sbjct: 120 YRCKPRDIITARDEQKSRALIQNFLDSS--SHEELPKHLTLH-----------PFQFKGV 166 Query: 190 PYPVI--------MQPNLVVEFYSR 206 +I + LVVE+YSR Sbjct: 167 VNQIIDSNWVGLKINELLVVEYYSR 191 >gi|209969161|emb|CAR92828.1| ribosomal protein S4 [Iris humilis] gi|209969163|emb|CAR92829.1| ribosomal protein S4 [Iris humilis] gi|209969165|emb|CAR92830.1| ribosomal protein S4 [Iris humilis] gi|209969167|emb|CAR92831.1| ribosomal protein S4 [Iris humilis] gi|209969169|emb|CAR92832.1| ribosomal protein S4 [Iris humilis] gi|209969171|emb|CAR92833.1| ribosomal protein S4 [Iris humilis] gi|209969173|emb|CAR92834.1| ribosomal protein S4 [Iris humilis] gi|209969175|emb|CAR92835.1| ribosomal protein S4 [Iris humilis] gi|209969177|emb|CAR92836.1| ribosomal protein S4 [Iris humilis] gi|209969179|emb|CAR92837.1| ribosomal protein S4 [Iris humilis] gi|209969181|emb|CAR92838.1| ribosomal protein S4 [Iris humilis] gi|209969183|emb|CAR92839.1| ribosomal protein S4 [Iris humilis] gi|209969185|emb|CAR92840.1| ribosomal protein S4 [Iris humilis] Length = 187 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 15 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 133 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 134 IQNFIASSPHE-ELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 185 >gi|184127957|gb|ACC67878.1| ribosomal protein small subunit 4 [Marattia salicina] Length = 190 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 85 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 144 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++ + DN FV + + + LVVE+YSR Sbjct: 145 QIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 188 >gi|33413195|emb|CAD86733.1| ribosomal protein small subunit 4 [Dicranum tauricum] Length = 191 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|17154595|emb|CAC83836.1| ribosomal protein S4 [Schizostylis coccinea] Length = 177 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 25 SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 SP G L Q R K S + ++L KQK++ +YG ++E++ A +++G T Sbjct: 8 SPSKRSRSGSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGST 66 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K Sbjct: 67 GQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTK 126 Query: 145 QKSKQLASVLEASQLAER--DVPEYISVN 171 K + A + L+ R ++P +++++ Sbjct: 127 NKQRSKALIQNFIDLSPRQGELPNHLTID 155 >gi|67035628|gb|AAY62745.1| small ribosomal protein subunit 4 [Chorisodontium mittenii] gi|222103508|gb|ACM44283.1| small ribosomal protein subunit 4 [Orthodicranum montanum] gi|222103538|gb|ACM44298.1| small ribosomal protein subunit 4 [Orthodicranum montanum] Length = 199 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|305672375|gb|ADM63611.1| ribosomal protein S4 [Hydrocotyle vulgaris] Length = 173 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I K Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITAK 130 >gi|121761863|gb|ABM65017.1| ribosomal protein S4 [Plagiomnium cf. tezukae Wyatt 1808] Length = 202 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGPTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE+RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K + + ++ +P++++ N N Sbjct: 117 ILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKSKIPDHLTYNSLNKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRDSIDLKINELLVVEYYSR 200 >gi|7109199|gb|AAF36675.1| ribosomal protein 4 [Rhabdoweisia crispata] Length = 190 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYLRIARKAKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 PTI ARQ VNHRH+LVN +VNI SYRCK D I +K + K A + ++ SQ A Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCTVNIPSYRCKPQDFITIKNRQKSQAMISKNIDFSQKA 147 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 148 K--VPNHLTFNSLEKKGLVNQI---LDQESIDLKINELLVVEYYSR 188 >gi|118577605|gb|ABL07168.1| small ribosomal protein 4 [Piper muricatum] gi|118577623|gb|ABL07177.1| small ribosomal protein 4 [Piper sylvaticum] Length = 180 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 4 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 55 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 56 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 115 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 116 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 172 Query: 201 VEFYSR 206 VE+YSR Sbjct: 173 VEYYSR 178 >gi|6002023|emb|CAA58918.1| ribosomal protein S4 [Alisma plantago-aquatica] Length = 196 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P++++V+ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKTLVQNYIASSSHE-ELPKHLTVD 167 >gi|11228660|gb|AAG33115.1| small ribosomal protein 4 [Orthodicranum fulvum] Length = 191 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|26399092|sp|P59135|RR4_BRYCA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504373|emb|CAC80631.1| small ribosomal protein 4 [Rosulabryum capillare] Length = 202 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P + T S + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGVLPGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN R VNI SYRCK D I +K + K A + + L ++ P +++ N Sbjct: 116 HILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VTQI---LDRESIGLKINELLVVEYYSR 200 >gi|118577647|gb|ABL07189.1| small ribosomal protein 4 [Macropiper timothianum] Length = 183 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 58 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 59 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 118 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 119 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|118577561|gb|ABL07146.1| small ribosomal protein 4 [Piper argyrophyllum] gi|118577581|gb|ABL07156.1| small ribosomal protein 4 [Piper graeffei] Length = 179 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 3 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 54 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 55 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 114 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 115 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 171 Query: 201 VEFYSR 206 VE+YSR Sbjct: 172 VEYYSR 177 >gi|170516227|gb|ACB15115.1| small ribosomal protein 4 [Dioon spinulosum] Length = 194 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 12 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 70 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R+ PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 71 STGQVLLQLLEMRSDNTIFRSGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 130 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 131 VRDQQRSRAMIEKNLDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 187 Query: 202 EFYSR 206 E+YSR Sbjct: 188 EYYSR 192 >gi|67035594|gb|AAY62728.1| small ribosomal protein subunit 4 [Archidium donnellii] Length = 202 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKNRQKSQSMVIKNIDFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++N +I L + + LVVE+YSR Sbjct: 160 KVPNHLTLNSLEKKGLINQI---LNHESIGLKINELLVVEYYSR 200 >gi|150390763|ref|YP_001320812.1| 30S ribosomal protein S4 [Alkaliphilus metalliredigens QYMF] gi|172052482|sp|A6TSI5|RS4B_ALKMQ RecName: Full=30S ribosomal protein S4 B gi|149950625|gb|ABR49153.1| RNA-binding S4 domain protein [Alkaliphilus metalliredigens QYMF] Length = 199 Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 13/208 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ + K RR+G N+ G PK+ + GQ R K K S +G+QL KQ+++ Sbjct: 1 MARMRQPRFKTCRRLGINVCGHPKAMKRADN------GQVRDKRKLSSYGIQLLEKQRLR 54 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YY ++ EK+F+ K A + T ++LI LE RLD +VYR F +I ARQ V H Sbjct: 55 AYY-EVMEKQFKIYVKAAIKDSETTGNSLIKKLECRLDNLVYRTGFGSSIRQARQMVVHG 113 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNMVAT 178 H+LVNG+ V+ S+ GD I +++KS++ + + L D YI+ N Sbjct: 114 HILVNGKKVDRPSFAVSVGDDISLREKSRK-NKIFIDNFLRNVDFSYPYIAKNEAGFSGQ 172 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P + P+ + +LVVEFYS+ Sbjct: 173 LIRMPERHEA---PIEVNDHLVVEFYSK 197 >gi|305672217|gb|ADM63532.1| ribosomal protein S4 [Azorella caespitosa] gi|305672275|gb|ADM63561.1| ribosomal protein S4 [Cryptothladia chinensis] Length = 173 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISV 170 + + + RD +P+++++ Sbjct: 139 IQNSFDSSFRDELPKHLTL 157 >gi|305672189|gb|ADM63518.1| ribosomal protein S4 [Apium graveolens] Length = 173 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISV 170 + + + +D +P+++++ Sbjct: 139 IQNSFDSSSQDEMPKHLTL 157 >gi|183217743|ref|YP_001837362.1| ribosomal protein S4 [Guizotia abyssinica] gi|179366258|gb|ACB86529.1| ribosomal protein S4 [Guizotia abyssinica] Length = 201 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 113/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D I + + K A + L++S ++P ++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRALIQNSLDSS--PHEELPNHLTLQPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|107770438|gb|ABF83760.1| small ribosomal protein 4 [Torreya nucifera] Length = 198 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 4/157 (2%) Query: 17 ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 + L G K N+ S G + KPS + + L+ KQ+++ +YG ++E++ + Sbjct: 5 KTLPGLSKQTPNSNSEESGKRKHSKPPKPSKYPVCLKEKQRLRFHYG-LTERQLLQYVRI 63 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A R+ G T L+ LE RLDTI++R TI ARQ VNHRH+LVN R V+I SYRCK Sbjct: 64 ARRANGPTGQVLLQLLEKRLDTIIFRLGMALTIPGARQLVNHRHILVNDRIVDIPSYRCK 123 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERD---VPEYISV 170 D+I +K + + + + L++RD VP ++++ Sbjct: 124 PQDLISIKDQQRSRNIINKNIDLSQRDKIWVPNHLNL 160 >gi|139387442|ref|YP_001122796.1| ribosomal protein S4 [Phaseolus vulgaris] gi|152060557|sp|A4GG95|RR4_PHAVU RecName: Full=30S ribosomal protein S4, chloroplastic gi|112030964|gb|ABH88076.1| ribosomal protein S4 [Phaseolus vulgaris] gi|158187159|gb|ABW22792.1| ribosomal protein S4 [Phaseolus vulgaris] Length = 201 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 5/172 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R SK S + ++L KQK++ +YG ++E++ + + +++G T L+ LE R Sbjct: 32 LRNQLRFSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRISGKAKGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQF+NHRHVLVNGR V+I SYRCK D+I K + K + Sbjct: 91 LDNILFRLGMAATIPQARQFINHRHVLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIQN 150 Query: 156 ASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A RD +P +++V+ +I + + + + LVVE+YSR Sbjct: 151 YLDSAPRDKLPNHLTVHPFQYKGLINQI---IDNKWVGLKINELLVVEYYSR 199 >gi|42794658|gb|AAS45726.1| Rps4 [Macleania bullata] Length = 211 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRXRKRKRVPXHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|305672181|gb|ADM63514.1| ribosomal protein S4 [Cichorium intybus] gi|305672299|gb|ADM63573.1| ribosomal protein S4 [Tragopogon dubius] Length = 173 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + QKSK L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSKAL 138 Query: 151 -ASVLEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTL 157 >gi|146261563|gb|ABQ15091.1| ribosomal protein S4 [Haloragis aspera] Length = 182 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 21/183 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 10 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 68 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 69 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITAKDEQKSRAM 128 Query: 153 VLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + L+ ++P+++++ P K + +I + LVVE+ Sbjct: 129 IQNYLDLSPHEELPKHLTLQ-----------PFQYKGLVNQIIDNKWVGLKINELLVVEY 177 Query: 204 YSR 206 YSR Sbjct: 178 YSR 180 >gi|22854709|gb|AAN09774.1| small ribosomal protein 4 [Holomitrium borbonicum] Length = 186 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 184 >gi|77019189|emb|CAH60200.1| chloroplast 30S ribosomal protein S4 [Grimmia muehlenbeckii] Length = 174 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 13 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 72 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSKSIIIKNMDFSQKY 131 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 132 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 172 >gi|184128043|gb|ACC67921.1| ribosomal protein small subunit 4 [Angiopteris lygodiifolia] Length = 169 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 5 KISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 64 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 123 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 124 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 167 >gi|33413159|emb|CAD86716.1| ribosomal protein small subunit 4 [Grimmia calyptrata] Length = 183 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I++++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEKKQKLRFHYG-ITKRQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 81 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 181 >gi|118577565|gb|ABL07148.1| small ribosomal protein 4 [Piper cordulatum] Length = 176 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 5/172 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 7 LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAKGSTGQVLLQLLEMR 65 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I + + + V Sbjct: 66 LDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITTRNEQRSKVLVQN 125 Query: 156 ASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A R ++P++++++ +I S K V + LVVE+YSR Sbjct: 126 SMDSASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLVVEYYSR 174 >gi|42794677|gb|AAS45735.1| Rps4 [Satyria boliviana] gi|42794689|gb|AAS45741.1| Rps4 [Satyria polyantha] Length = 211 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|60117193|ref|YP_209527.1| ribosomal protein S4 [Huperzia lucidula] gi|62287201|sp|Q5SD08|RR4_HUPLU RecName: Full=30S ribosomal protein S4, chloroplastic gi|50660001|gb|AAT80723.1| ribosomal protein S4 [Huperzia lucidula] Length = 202 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+GE PGL + K KP Y + Sbjct: 1 MSRYRGPRLKIIRRLGE---------------LPGLTRKTPKLKPDYINKSTPNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ ++G ++E++ + A R++G T L+ LE RLD I++R PT Sbjct: 46 CIRLEEKQKLRFHHG-LAEQQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEY 167 I ARQ VNH+H+LVN R++N+ SYRCK D+I + + + A + + + ++ +P + Sbjct: 105 IPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRPESRARITKNYEFSQTYKIPNH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++++ V +I + + + LVVE+YSR Sbjct: 165 LTLHSLQSVGLVNKI---VDRESIDLNINELLVVEYYSR 200 >gi|77019177|emb|CAH60194.1| chloroplast 30S ribosomal protein S4 [Grimmia khasiana] Length = 184 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 82 GMTPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMNFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 182 >gi|52783272|sp|Q6H9L1|RR4_EQUHY RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927201|emb|CAE47536.1| small ribosomal protein 4 [Equisetum hyemale] Length = 207 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 115/210 (54%), Gaps = 9/210 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+ +NL G V ++ Q + K S +G++L AKQ+++ Sbjct: 1 MSRYRGPRLRIIRRL-QNLPGLTNKLVESKKKKVSGSDQSIQKKVSQYGIRLEAKQRLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + + A ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH Sbjct: 60 NYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEY--ISVNHDNMV 176 +LVN R V++ S+ CK D+I + + K S+L A+ +PE+ +S++ Sbjct: 119 ILVNNRIVDVPSFHCKPKDIITI-EAPKTYQSILSKRLESFAKDQIPEHLTLSLSEPKKP 177 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV + + + + LVVE+YSR Sbjct: 178 KGFVNYLINRESIGLKI--NELLVVEYYSR 205 >gi|281190726|ref|YP_003330963.1| ribosomal protein S4 [Parthenium argentatum] gi|269924839|gb|ACZ52712.1| ribosomal protein S4 [Parthenium argentatum] Length = 201 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I + QKS+ L S E ++P ++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRALIQNYLDSSPPE-ELPNHLTLQPFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|118577585|gb|ABL07158.1| small ribosomal protein 4 [Piper hongkongense] gi|118577603|gb|ABL07167.1| small ribosomal protein 4 [Piper montium] gi|118577627|gb|ABL07179.1| small ribosomal protein 4 [Piper tricolor] Length = 178 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 2 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 53 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 54 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 113 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 114 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 170 Query: 201 VEFYSR 206 VE+YSR Sbjct: 171 VEYYSR 176 >gi|189162273|ref|YP_001936519.1| ribosomal protein S4 [Fagopyrum esculentum subsp. ancestrale] gi|166065359|gb|ABY79734.1| ribosomal protein S4 [Fagopyrum esculentum subsp. ancestrale] Length = 198 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 23/176 (13%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG I+E++ F+ A +++G T L+ LE RLD I+ Sbjct: 34 RSGKRSQYRIRLEEKQKLRFHYG-ITERQLLKYFRIARKAKGSTGQVLLQLLEMRLDNIL 92 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI--EVKQKSKQLASVLEASQ 158 +R PTI ARQ VNH HVLVNGR V+I SYRCK D++ KQKSK L S Sbjct: 93 FRLGMAPTIPGARQLVNHGHVLVNGRIVDIPSYRCKPNDIVMSRDKQKSKALVQNYLDSS 152 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 +E ++P++++++ P K V +I + LVVE+YSR Sbjct: 153 HSE-ELPKHLTLH-----------PFPYKGVVNQIIDNKWVGLKINELLVVEYYSR 196 >gi|22854689|gb|AAN09764.1| small ribosomal protein 4 [Chorisodontium setaceum] gi|22854691|gb|AAN09765.1| small ribosomal protein 4 [Dichodontium pellucidum] Length = 184 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 82 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 141 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 182 >gi|89112961|gb|ABD61099.1| ribosomal protein subunit 4 [Dryptodon trichophyllus] Length = 172 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K + +++ +++ Sbjct: 70 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKDRQKSKSIIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|305672239|gb|ADM63543.1| ribosomal protein S4 [Pennantia cunninghamii] Length = 173 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I K + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|118577641|gb|ABL07186.1| small ribosomal protein 4 [Macropiper melanostachyum] Length = 179 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 3 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 54 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 55 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 114 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 115 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 171 Query: 201 VEFYSR 206 VE+YSR Sbjct: 172 VEYYSR 177 >gi|118577625|gb|ABL07178.1| small ribosomal protein 4 [Piper thomsonii] Length = 184 Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 60 GSTGRVLLQLLEMRLDNILFRLSMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 119 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 120 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|116010521|emb|CAL37367.1| ribosomal protein S4 [Syringa vulgaris] Length = 194 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 106/188 (56%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKA-------GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L++S ++P +++++ +I S K V + Sbjct: 130 MTKDEQKSRTLIQNSLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 184 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 185 LVVEYYSR 192 >gi|118577637|gb|ABL07184.1| small ribosomal protein 4 [Macropiper latifolium] gi|118577643|gb|ABL07187.1| small ribosomal protein 4 [Macropiper puberulum f. glabrum] Length = 178 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 2 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 53 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 54 GSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 113 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 114 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 170 Query: 201 VEFYSR 206 VE+YSR Sbjct: 171 VEYYSR 176 >gi|166092896|gb|ABY82408.1| ribosomal protein S4 [Agrostemma githago] Length = 201 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 113/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRT-------GSDLRAQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG I+E++ + A +++G T L LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-ITERQLFKYVRIARKAKGSTGQVLXXLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D I K QKS+ L S E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNYLDSSPPE-ELPKHLTLDPFP 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 171 YKGLINQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|184127945|gb|ACC67872.1| ribosomal protein small subunit 4 [Marattia alata] gi|184127947|gb|ACC67873.1| ribosomal protein small subunit 4 [Marattia douglasii] Length = 190 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 21 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 80 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 139 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 140 SLNKDKIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 188 >gi|291320521|ref|YP_003515785.1| 30S ribosomal protein S4 [Mycoplasma agalactiae] gi|290752856|emb|CBH40831.1| 30S ribosomal protein S4 [Mycoplasma agalactiae] Length = 198 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 9/177 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+Y PG HG +R K S +GL L KQK++ YG ISEK+ + I+ A + +G NL+ Sbjct: 31 RTYAPGQHGNKR-VKLSDYGLHLYEKQKVRFIYG-ISEKQLQKIYARAIKMKGVAGTNLL 88 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LESR D +VYRA F T ARQ V H H +NG++ +I S GDVI +K K++ Sbjct: 89 QLLESRFDNVVYRAGFATTRRQARQLVAHGHFQLNGKNADIPSMHISVGDVITLKAKTQN 148 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V A L + +++V N A R+P + P ++ N V+E YS+ Sbjct: 149 NNQVKAA--LESKPAAAWLTV--KNFEAKVDRLPDRSELNPN---VKENFVIEHYSK 198 >gi|184127951|gb|ACC67875.1| ribosomal protein small subunit 4 [Marattia laxa] gi|184127953|gb|ACC67876.1| ribosomal protein small subunit 4 [Marattia laxa] Length = 199 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 154 KIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 197 >gi|42794634|gb|AAS45716.1| Rps4 [Cavendishia complectens] gi|42794673|gb|AAS45733.1| Rps4 [Psammisia ulbrichiana] gi|42794693|gb|AAS45743.1| Rps4 [Satyria vargasii] Length = 211 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|32892116|gb|AAP88997.1| ribosomal protein S4 [Mitostemma brevifilis] gi|74273239|gb|ABA01319.1| ribosomal protein S4 [Dilkea johannesii] Length = 186 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 15/187 (8%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ G Q R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIA----GSAFQNQSRSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 63 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 64 TGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 123 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P+++++ H V + + D + V +Q N L Sbjct: 124 KDEQKSKDMIQN-SLDSFPQEKLPKHLTL-HPFQYKGLV---NQIIDSKW-VGLQINELL 177 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 178 VVEYYSR 184 >gi|157689416|gb|ABV65264.1| ribosomal protein S4 [Atuna racemosa] Length = 193 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 17/178 (9%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ +E R Sbjct: 24 LRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIAAKAKGSTGQVLLQLIEMR 82 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK + K A + Sbjct: 83 LDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITVKDEQKSRAMIQN 142 Query: 154 -LEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 L++S A+ ++P++++ + H +V + D + + + LVVE+YSR Sbjct: 143 HLDSS--AQEELPKHLTFHPFQHKGLVNQII-------DSKWIGLKINELLVVEYYSR 191 >gi|26554211|ref|NP_758145.1| 30S ribosomal protein S4 [Mycoplasma penetrans HF-2] gi|41017842|sp|Q8EV12|RS4_MYCPE RecName: Full=30S ribosomal protein S4 gi|26454220|dbj|BAC44549.1| ribosomal protein S4 [Mycoplasma penetrans HF-2] Length = 202 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 106/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN--TRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ S K RR G +L + + R+Y PG HG +R K S +G QL+ KQKM Sbjct: 1 MSRYLGSITKKSRRYGFSLLETEREFIKGKKRTYAPGQHGNKR-VKLSGYGEQLQEKQKM 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +++++FR F A +G + N LESRLD +VYR F PT AARQ VNH Sbjct: 60 MYLYG-LNDRQFRRTFVIAKHMKGALTLNTFIALESRLDNLVYRMGFAPTRRAARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+L++G+ V I S K IEV KSK L V A +++ + Sbjct: 119 GHILLDGKKVTIPSCMVKLEQTIEVAPKSKDLPIVAAG---ASNTPCKFVDSDLKTKKGK 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR P +D P + VVE+++R Sbjct: 176 YVRFPE--RD-ELPEGINEAYVVEWFNR 200 >gi|118577569|gb|ABL07150.1| small ribosomal protein 4 [Piper dilatatum] Length = 185 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 RPRSESSLRS-------QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 61 GSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 120 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I + + + + LV Sbjct: 121 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQI---IDNKGVGLKINELLV 177 Query: 201 VEFYSR 206 VE+YSR Sbjct: 178 VEYYSR 183 >gi|184127949|gb|ACC67874.1| ribosomal protein small subunit 4 [Marattia douglasii] Length = 186 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 17 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 76 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 135 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++++ DN FV + + + LVVE+YSR Sbjct: 136 SLNKDKIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 184 >gi|62288945|sp|P69651|RR4_SISSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288946|sp|P69652|RR4_SISST RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293074|emb|CAA92560.1| ribosomal protein S4 [Sisyrinchium sp. 'Lejeune 1997'] gi|2293081|emb|CAA92561.1| ribosomal protein S4 [Sisyrinchium striatum] Length = 194 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 AS E ++P +++++ + + + + + D + + + LVVE+YSR Sbjct: 141 IQNSIASSPHE-ELPNHLTID----LFQYKGLVNQIIDSKWIGLKINELLVVEYYSR 192 >gi|32401822|gb|AAP80899.1| small ribosomal protein 4 [Hedera helix] Length = 184 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A + +G T L+ L Sbjct: 12 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKVKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 71 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 130 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + S +HD + P K + +I + LVVE+Y Sbjct: 131 IQNSLD----------SSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYY 180 Query: 205 SR 206 SR Sbjct: 181 SR 182 >gi|22854729|gb|AAN09784.1| small ribosomal protein 4 [Orthodicranum flagellare] Length = 189 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|160942871|ref|ZP_02090110.1| hypothetical protein FAEPRAM212_00347 [Faecalibacterium prausnitzii M21/2] gi|158445772|gb|EDP22775.1| hypothetical protein FAEPRAM212_00347 [Faecalibacterium prausnitzii M21/2] gi|295103949|emb|CBL01493.1| SSU ribosomal protein S4P [Faecalibacterium prausnitzii SL3/3] Length = 200 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 7/172 (4%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 +G RK K S + QL+ KQK+K YG + EK+F + + +A+ G T NL+ +E RL Sbjct: 34 NGNVRK-KQSEYASQLKEKQKVKFIYG-VLEKQFHNAYLKAESRPGKTGENLLQIMECRL 91 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA--SVL 154 D +V+R F T ARQ V+H H VNG+ VNI SY+ K GDVIEV++ S+ A + L Sbjct: 92 DNVVFRLGFAQTRRDARQLVSHAHFTVNGKKVNIPSYQVKAGDVIEVRESSRSSAKFAKL 151 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +P +++ ++ ++P D+ Y V +L+VE YS+ Sbjct: 152 TGAEAPVVALPAWLNRETGSLKGVVAKLPER-SDIDYEV--AEHLIVELYSK 200 >gi|94502493|ref|YP_588119.1| ribosomal protein S4 [Helianthus annuus] gi|122179576|sp|Q1KXV7|RR4_HELAN RecName: Full=30S ribosomal protein S4, chloroplastic gi|88656897|gb|ABD47148.1| ribosomal protein S4 [Helianthus annuus] Length = 201 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D I + + K A + L++S E +P ++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRALIQNSLDSSPPEE--LPNHLTLQPF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|182439823|ref|YP_001827542.1| 30S ribosomal protein S4 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780487|ref|ZP_08239752.1| ribosomal protein S4 [Streptomyces cf. griseus XylebKG-1] gi|226695079|sp|B1W3H7|RS4_STRGG RecName: Full=30S ribosomal protein S4 gi|178468339|dbj|BAG22859.1| putative 30S ribosomal protein S4 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660820|gb|EGE45666.1| ribosomal protein S4 [Streptomyces cf. griseus XylebKG-1] Length = 204 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 12/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRAKKAEGKTGEALVVELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNM 175 + VNG V+ S+R + D+++V+++S+ Q+A E + + P Y+ VN + Sbjct: 119 IEVNGGKVDKPSFRVRPDDIVQVRERSRSKVPFQVAR--EGGYDTDGETPRYLQVNLKAL 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 177 AFRLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|116617110|ref|YP_817484.1| ribosomal protein S4 [Coffea arabica] gi|122153623|sp|A0A337|RR4_COFAR RecName: Full=30S ribosomal protein S4, chloroplastic gi|116242166|gb|ABJ89681.1| ribosomal protein S4 [Coffea arabica] Length = 201 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GNDLRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITGKDEQKSRAL 147 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P +++++ +I S K V + LVVE+YSR Sbjct: 148 IQKSLDSS--PQEELPSHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|47606916|gb|AAT36378.1| ribosomal protein subunit 4 [Mittenia plumula] Length = 194 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVNGR VNI SYRCK D I +K + K V++ +++ Sbjct: 92 GLAPTIPGARQLVNHKHILVNGRIVNIPSYRCKPQDSIIIKDRQKSKNIVIKNLDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKVNELLVVEYYSR 192 >gi|21220006|ref|NP_625785.1| 30S ribosomal protein S4 [Streptomyces coelicolor A3(2)] gi|256788896|ref|ZP_05527327.1| 30S ribosomal protein S4 [Streptomyces lividans TK24] gi|289772782|ref|ZP_06532160.1| 30S ribosomal protein S4 [Streptomyces lividans TK24] gi|26399515|sp|Q9KXP5|RS4_STRCO RecName: Full=30S ribosomal protein S4 gi|8249964|emb|CAB93385.1| 30S ribosomal protein S4 [Streptomyces coelicolor A3(2)] gi|289702981|gb|EFD70410.1| 30S ribosomal protein S4 [Streptomyces lividans TK24] Length = 204 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+ + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MANQPRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y D+SE++ ++ A ++ T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DLSERQLVRAYERASKTNMKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--LASVLEASQLA-ERDVPEYISVNHDNMVA 177 + VNG+ V+ S+R + DV++V+++SK+ L ++ A + + P Y+ VN + Sbjct: 119 IQVNGQKVDKPSFRVRPDDVVQVRERSKEKTLFTIAREGGFAPDGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDREPNR-KEI--PVICDEQLVVEYYAR 204 >gi|305672311|gb|ADM63579.1| ribosomal protein S4 [Griselinia littoralis] Length = 173 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSLDSSPHDELPKHLTLD 158 >gi|184127993|gb|ACC67896.1| ribosomal protein small subunit 4 [Marattia purpurascens] Length = 189 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 97/166 (58%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ ++ V + + +D Sbjct: 84 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSRILVKKNLESLNKD 143 Query: 164 -VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ DN FV + + + LVVE+YSR Sbjct: 144 QIPEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 187 >gi|116010493|emb|CAL37353.1| ribosomal protein S4 [Vinca major] Length = 194 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 81 EMRLDNILFRLGMATTIPTARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRA- 139 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 L ++ + Y H + + + P K + +I + LVVE+Y Sbjct: 140 ------LIQKSLDSY---PHGELPSHLILQPFQYKGLVNQIIDSKWVGLKINELLVVEYY 190 Query: 205 SR 206 SR Sbjct: 191 SR 192 >gi|7525035|ref|NP_051061.1| ribosomal protein S4 [Arabidopsis thaliana] gi|6685914|sp|P56799|RR4_ARATH RecName: Full=30S ribosomal protein S4, chloroplastic gi|5881696|dbj|BAA84387.1| ribosomal protein S4 [Arabidopsis thaliana] Length = 201 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 29/217 (13%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKA-------GSDLRNQSRSVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E + + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN-- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPNHLTLHTF 169 Query: 172 -HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 170 QYEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|11228625|gb|AAG33098.1| small ribosomal protein 4 [Cynodontium jenneri] Length = 166 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 5 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 64 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAIIIKNVDFSQKA 123 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 124 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 164 >gi|67035740|gb|AAY62801.1| small ribosomal protein subunit 4 [Timmiella anomala] Length = 191 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D + +K + K A +++ + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFVTIKDRQKSQAIIIKNIEFFQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPSHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|42794681|gb|AAS45737.1| Rps4 [Satyria grandifolia] Length = 211 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|305672339|gb|ADM63593.1| ribosomal protein S4 [Argophyllum laxum] Length = 173 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSALRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITARNEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTL 157 >gi|305672255|gb|ADM63551.1| ribosomal protein S4 [Angelica sylvestris] Length = 173 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISV 170 + + + +D +P+++++ Sbjct: 139 IQNSFDSSSQDEMPKHLTL 157 >gi|22854707|gb|AAN09773.1| small ribosomal protein 4 [Eucamptodontopsis brittoniae] Length = 175 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 14 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 73 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDSITIKDRQKSQAMIIKNIDFSQKS 132 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 133 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 173 >gi|32401802|gb|AAP80889.1| small ribosomal protein 4 [Nandina domestica] Length = 191 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 19 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 77 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 78 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRAL 137 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 138 IQNYLDSS--PHEELPKHLTLHSSQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 189 >gi|149178472|ref|ZP_01857061.1| 30S ribosomal protein S4 [Planctomyces maris DSM 8797] gi|148842685|gb|EDL57059.1| 30S ribosomal protein S4 [Planctomyces maris DSM 8797] Length = 201 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 107/198 (54%), Gaps = 13/198 (6%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + K +++RR+G ++ ++ R+ PG+ +RRKS S FGL L KQK+ Sbjct: 1 MGRYTGPKGRVNRRLGALVFEDAGATRALDQRNLPPGMSQRRRKS--SNFGLALIEKQKI 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG + E++ R F +A R +G+T L+ E RLD ++ RA F T ARQ + H Sbjct: 59 KFYYG-LRERQLRRYFDKARRIKGNTGEALLILCERRLDNVICRAGFAQTRPQARQGIVH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQK---SKQLASVLEASQLAERDVPEYISVNHDNM 175 H +NGR+VN S K GDVI V+ + K A ++E+ R ++++ + Sbjct: 118 SHFQLNGRTVNKPSIWVKPGDVITVRNRPNLKKLYAELIESG----RPGCAWLTLEKKEL 173 Query: 176 VATFVRIPSSLKDVPYPV 193 AT V P +++DV PV Sbjct: 174 SATVVTAP-TMEDVSLPV 190 >gi|322719503|gb|ADX07688.1| small ribosomal protein subunit 4 [Niphotrichum canescens] Length = 198 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDNESIGLKINELLVVEYYSR 196 >gi|14090476|gb|AAK53523.1| small ribosomal protein 4 [Holomitrium vaginatum] Length = 182 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDSITIKDRQKSQAMIIKNIDFSQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|14090442|gb|AAK53506.1| small ribosomal protein 4 [Calymperes afzelii] Length = 182 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ FLE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKTKGSTGQILLQFLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + + Sbjct: 80 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFSPKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|22854711|gb|AAN09775.1| small ribosomal protein 4 [Holomitrium calycinum] Length = 185 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 142 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 143 KIPNHLAFSFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|146261575|gb|ABQ15097.1| ribosomal protein S4 [Myriophyllum sp. Broch s.n.] Length = 190 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 21/183 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 18 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 77 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAM 136 Query: 153 VLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + L+ ++P+++++ P K + +I + LVVE+ Sbjct: 137 IQNYLDLSPHEELPKHLTLQ-----------PFQYKGLVNQIIDKNWVGLKINELLVVEY 185 Query: 204 YSR 206 YSR Sbjct: 186 YSR 188 >gi|305672187|gb|ADM63517.1| ribosomal protein S4 [Citronella suaveolens] Length = 173 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGLAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|67035638|gb|AAY62750.1| small ribosomal protein subunit 4 [Hypodontium dregei] Length = 194 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKYQAMIIKNLDFSQKT 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|320011906|gb|ADW06756.1| ribosomal protein S4 [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 109/211 (51%), Gaps = 12/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRARKAEGKTGEALVVELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-----QLASVLEASQLAERDVPEYISVNHDNM 175 + VNG V+ S+R + DV++V+++S+ Q+A E + + P Y+ VN + Sbjct: 119 IEVNGGKVDKPSFRVRPDDVVQVRERSRSKVPFQVAR--EGGYDTDGETPRYLQVNLKAL 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 177 AFRLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|149390542|ref|YP_001294186.1| ribosomal protein S4 [Buxus microphylla] gi|172048678|sp|A6MM38|RR4_BUXMI RecName: Full=30S ribosomal protein S4, chloroplastic gi|146762287|gb|ABQ45251.1| ribosomal protein S4 [Buxus microphylla] Length = 201 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 113/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I K QKS+ L + L++S ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSS--PHEELPKHLTLHSFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|78369639|gb|ABB43049.1| ribosomal protein 4 [Calymperes dozyanum] Length = 199 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ FLE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKTKGSTGQILLQFLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + + Sbjct: 97 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFSPKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|33519682|ref|NP_878514.1| 30S ribosomal protein S4 [Candidatus Blochmannia floridanus] gi|41017831|sp|Q7VQC4|RS4_BLOFL RecName: Full=30S ribosomal protein S4 gi|33517345|emb|CAD83730.1| 30S ribosomal subunit protein S4 [Candidatus Blochmannia floridanus] Length = 207 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 7/177 (3%) Query: 32 YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF 91 + PG H R KS+ S +G+QLR KQK+K+ YG I E +F + ++++ +G+T L+ Sbjct: 36 HAPGQHSIR-KSRLSDYGVQLREKQKVKRMYG-ILENQFANYYRKSASMKGNTGEILLQL 93 Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 LESRLD +VYR F T +RQ V+H+ ++VN VNI SY+ VI+V +KS + Sbjct: 94 LESRLDNVVYRMGFGSTRAESRQLVSHKSIIVNDCIVNIASYQVVPNTVIQVYKKSHNQS 153 Query: 152 SVLEASQLAE--RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A ++AE R+ +I V+ + F R P + + +L+VE YS+ Sbjct: 154 RIYAALEIAEQQRESVPWIEVDSAKLKGIFKRRP---ERSELSANINEHLIVELYSK 207 >gi|118577597|gb|ABL07164.1| small ribosomal protein 4 [Piper marginatum] Length = 183 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 14/187 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAK 58 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 59 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 118 Query: 142 EVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + Q+SK L S E ++P++++++ +I S K V + L Sbjct: 119 TTRNEQRSKVLVQNSMDSAYPE-ELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|91200693|emb|CAJ73744.1| strongly similar to 30S ribosomal protein S4 [Candidatus Kuenenia stuttgartiensis] Length = 208 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 115/214 (53%), Gaps = 14/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K + R Y PG R K S +G+Q R Sbjct: 1 MARYVGPQCRLCRREGEKLFLKGFRCETAKCAITKRKYPPGQFSWGR-GKLSKYGIQFRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K++YG + E++FR+ F++A++ +G+T NL+ LE RLD +V+ F + +ARQ Sbjct: 60 KQKVKRFYG-VLERQFRNYFRKAEKQKGNTGDNLLVMLERRLDNVVHLLTFAHSRKSARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNH 172 + H +V VN + V+I S+ K GDVI K ++S++L A L R + ++ Sbjct: 119 LILHGNVTVNDKKVDIASFLVKVGDVIRPKNSERSRKLVQD-NAEALKSRKISSWLEFRQ 177 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P+ D+ V Q L++E S+ Sbjct: 178 GALEGVVTQLPNR-DDISVSV--QEQLIIELCSK 208 >gi|20531105|gb|AAM27373.1| ribosomal protein 4 [Dicranoweisia cirrata] Length = 192 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 150 KVPNHLTFNSLEKKGLVNQI---LNQESIGLKINELLVVEYYSR 190 >gi|184128049|gb|ACC67924.1| ribosomal protein small subunit 4 [Angiopteris angustifolia] Length = 190 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 21 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 80 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 139 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 140 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 188 >gi|305672285|gb|ADM63566.1| ribosomal protein S4 [Crispiloba disperma] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+L+NGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILINGRIVDIPSYRCKPRDTITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 V L++S ++P++++++ Sbjct: 139 VQNSLDSS--PHEELPKHLTLH 158 >gi|67035566|gb|AAY62714.1| small ribosomal protein subunit 4 [Symblepharis lindigii] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|254935419|gb|ACT88097.1| ribosomal protein S4 [Pseudopanax colensoi var. colensoi] Length = 181 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITAR 119 >gi|20531066|gb|AAM27355.1| ribosomal protein 4 [Pogonatum perichaetiale] Length = 195 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R+VNI SYRCK D I +K + + A + + +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDRTVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|305672241|gb|ADM63544.1| ribosomal protein S4 [Nephrophyllidium crista-galli] gi|305672273|gb|ADM63560.1| ribosomal protein S4 [Menyanthes trifoliata] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITARDEQKSRAL 138 Query: 153 V 153 V Sbjct: 139 V 139 >gi|254935415|gb|ACT88095.1| ribosomal protein S4 [Pseudopanax linearis] Length = 181 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 21/182 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEEN---- 123 Query: 153 VLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + + Y+ S +HD + P K + +I + LVVE+ Sbjct: 124 -------SRTLIQNYLDSSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEY 176 Query: 204 YS 205 YS Sbjct: 177 YS 178 >gi|7109193|gb|AAF36672.1| ribosomal protein 4 [Amphidium lapponicum] Length = 190 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V HRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 88 GMAPTIPGARQLVXHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMIXKNXDFSQKX 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 148 KIPNHLSFNSLEKKGLVNKI---LDQESIGLKINELLVVEYYSR 188 >gi|62287263|sp|Q6H9K2|RR4_EQUVA RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927219|emb|CAE47545.1| small ribosomal protein 4 [Equisetum variegatum] Length = 207 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+ +NL G V ++ Q + K S +G++L AKQ+++ Sbjct: 1 MSRYRGPRLRIIRRL-QNLPGLTNKLVESKKNKVSGSDQSIQKKVSQYGIRLEAKQRLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + + A ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH Sbjct: 60 NYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVA 177 +LVN R V++ S+ CK D+I + K+ Q A+ VPE+ +S++ Sbjct: 119 ILVNNRIVDVPSFHCKPKDIITIGSPKTYQSILTKRIESFAKDQVPEHLTLSLSEPKKPK 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV + + + + LVVE+YSR Sbjct: 179 GFVNYLINRESIGLKI--NELLVVEYYSR 205 >gi|297522436|gb|ADI44667.1| small ribosomal protein 4 [Micromitrium megalosporum] Length = 184 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ + +++ Sbjct: 82 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIEFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 142 KVPNHLTFNSLEKKGLINQI---LNHESIGLKINELLVVEYYSR 182 >gi|69216104|gb|AAZ03890.1| ribosomal protein S4 [Ginkgo biloba] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 23/214 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKS---PVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 MS+ + KI RR+ L G RPKS P+N S G K S + ++L Sbjct: 1 MSRYRGPRLKIIRRL-RALPGLTSKRPKSGNDPINRSSSG----------KISQYRIRLE 49 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK++ +YG ++E++ + A +++G T L+ LE R D I++R+ TI AR Sbjct: 50 EKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRSDNIIFRSGMALTIPGAR 108 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q VNHRH+LVN R V+I SYRCK DVI ++ + + A + L++RD +P +++++ Sbjct: 109 QLVNHRHLLVNDRVVDIPSYRCKPQDVITIRDQQRSRAIIKNNINLSQRDKMPNHLTLHS 168 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI S K + + LVVE+YSR Sbjct: 169 SQYKGLVNRIIDS-KWINLKI--NELLVVEYYSR 199 >gi|67035662|gb|AAY62762.1| small ribosomal protein subunit 4 [Cheilothela chloropus] Length = 192 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKNRQKSQAMIIKNLTFSQKA 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 150 KVPNHLTFNSLENKGLVNQI---LDQESIGLKINELLVVEYYSR 190 >gi|322719527|gb|ADX07700.1| small ribosomal protein subunit 4 [Bucklandiella sudetica] Length = 198 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIEFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|157689562|gb|ABV65337.1| ribosomal protein S4 [Strasburgeria robusta] Length = 185 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 32/196 (16%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 RPKA-------GSDLRNQSRSLKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 61 GSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKARDII 120 Query: 142 EVK--QKSKQLASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI---- 194 + QKS+ L + Y+ S H+ + PS K + +I Sbjct: 121 TARDEQKSRAL-------------IQNYLDSSFHEELTKHLTLYPSQYKGLVNQIIDSKW 167 Query: 195 ----MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 168 VGLKINELLVVEYYSR 183 >gi|157689466|gb|ABV65289.1| ribosomal protein S4 [Elaeagnus sp. Nickrent 2898] Length = 184 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R SK S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRPSKKSQYRIRLEEKQKLRFHYG-LTEQQLLKYIRIAGKAKGSTGLVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+ VNGR V+I SYRCK D+I VK + K A Sbjct: 71 EMRLDNILFRLGMASTIPQARQLVNHRHIFVNGRIVDIPSYRCKPRDIITVKDEQKSRAL 130 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V L+++ + ++P++++++ +I S K V + LVVE+YSR Sbjct: 131 VQNYLDSA--SHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|121761867|gb|ABM65019.1| ribosomal protein S4 [Plagiomnium cf. tezukae Harris 859] Length = 186 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 144 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 184 >gi|63191869|gb|AAY34894.1| small ribosomal protein subunit 4 [Ephemerum serratum] Length = 195 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKTKGSTGLILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDCITIKDRQKSQVMITKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|118577557|gb|ABL07144.1| small ribosomal protein 4 [Piper aequale] Length = 176 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 5/172 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 7 LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMR 65 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I + + + V Sbjct: 66 LDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITTRNEQRSKVLVQN 125 Query: 156 ASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A R ++P++++++ +I S K V + LVVE+YSR Sbjct: 126 SMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLVVEYYSR 174 >gi|118577631|gb|ABL07181.1| small ribosomal protein 4 [Piper yinkiangense] Length = 184 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 60 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 119 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 120 TTRNEQRSKVLVPNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|157689552|gb|ABV65332.1| ribosomal protein S4 [Ruptiliocarpon caracolito] Length = 180 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 8 GNDLRSQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 66 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 67 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 126 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P++++++ +I S K V + LVVE+YSR Sbjct: 127 IQNYLDSS--SHEELPKHLTLHTFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 178 >gi|14090490|gb|AAK53530.1| small ribosomal protein 4 [Schistomitrium robustum] Length = 183 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKTIEFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++++ +I L + M LVVE+YSR Sbjct: 141 KVPNHLTLDSLEKKGLVNQI---LNHESIGLKMNELLVVEYYSR 181 >gi|20531064|gb|AAM27354.1| ribosomal protein 4 [Polytrichadelphus aristatus] Length = 192 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y ++ Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPXXKSGY---INQQTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R+ G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 LNYVRXARRAXGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDSIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + A ++ +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKDRQESQAIIIRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIDLKINELLVVEYYSR 190 >gi|121761861|gb|ABM65016.1| ribosomal protein S4 [Plagiomnium cf. tezukae Wyatt 1799] Length = 198 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 156 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 196 >gi|12642248|gb|AAK00206.1| rps4 [Archidium donnellii] Length = 195 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 5/156 (3%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R PTI Sbjct: 42 LXEKQKLRSHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPG 100 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISV 170 ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ VP ++++ Sbjct: 101 ARQLVNHRHILVNNXIVNIPSYRCKPQDFITIKNRQKSQSMVIKNIDFSQKYKVPNHLTL 160 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +I L + + LVVE+YSR Sbjct: 161 NSLEKKGLINQI---LNHESIGLKINELLVVEYYSR 193 >gi|12642250|gb|AAK00207.1| rps4 [Ephemerum spinulosum] Length = 190 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKTKGSTGLILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDCITIKDRQKSQVMITKNVDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|290487062|gb|ADD29915.1| ribosomal protein S4 [Aucuba japonica] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 147 Query: 153 VLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + R ++P++++++ +I S K V + LVVE+YSR Sbjct: 148 IQNSLDSSTREELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|305672317|gb|ADM63582.1| ribosomal protein S4 [Tetradoxa omeiensis] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 6/139 (4%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 23 LRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 81 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + Sbjct: 82 LDNILFRLGMAPTIPGARQLVNHRHILVNGRMVDIPSYRCKPRDIITARDEQNSRALIQN 141 Query: 154 -LEASQLAERDVPEYISVN 171 LE+S ++P++++++ Sbjct: 142 SLESS--PHEELPKHLTLH 158 >gi|124302908|ref|YP_001023703.1| ribosomal protein S4 [Angiopteris evecta] gi|152060544|sp|A2T335|RR4_ANGEV RecName: Full=30S ribosomal protein S4, chloroplastic gi|110628306|gb|ABG79602.1| ribosomal protein S4 [Angiopteris evecta] Length = 206 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 42 KISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 101 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 160 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++ + DN FV + + + LVVE+YSR Sbjct: 161 QIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 204 >gi|63191871|gb|AAY34895.1| small ribosomal protein subunit 4 [Gyroweisia tenuis] Length = 194 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFISIKNRQKSQVMITKNIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 152 KIPNHLSFNSLEKKGLVNQI---LNQESIGLKINELLVVEYYSR 192 >gi|305672207|gb|ADM63527.1| ribosomal protein S4 [Wittsteinia panderi] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPLDTITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|17154592|emb|CAC79546.1| ribosomal protein S4 [Hesperantha pseudopilosa] Length = 177 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 25 SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 SP G L Q R K S + ++L KQK++ +YG ++E++ A +++G T Sbjct: 8 SPSKRPRSGSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGST 66 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV- 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 67 GQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTK 126 Query: 144 -KQKSKQLASVLEASQLAERDVPEYISVN 171 KQ+SK L S + ++P +++++ Sbjct: 127 NKQRSKALIQNFIDSSPHQGELPNHLTID 155 >gi|91208904|ref|YP_538937.1| ribosomal protein S4 [Gossypium hirsutum] gi|119368501|ref|YP_913189.1| ribosomal protein S4 [Gossypium barbadense] gi|325210932|ref|YP_004286006.1| ribosomal protein S4 [Gossypium thurberi] gi|90101660|sp|Q2L908|RR4_GOSHI RecName: Full=30S ribosomal protein S4, chloroplastic gi|125987751|sp|A0ZZ37|RR4_GOSBA RecName: Full=30S ribosomal protein S4, chloroplastic gi|85687418|gb|ABC73630.1| ribosomal protein S4 [Gossypium hirsutum] gi|119224863|dbj|BAF41249.1| Ribosomal protein S4 [Gossypium barbadense] gi|290775794|gb|ADD62290.1| ribosomal protein S4 [Gossypium thurberi] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYI---SVNHDN 174 +LVNGR+V+I SYRCK D+I + QKS+ L + L++S ++P+++ ++ + Sbjct: 116 ILVNGRTVDIPSYRCKPRDIISARDEQKSRTLIQNYLDSS--TNEELPKHLTFHTLQYKG 173 Query: 175 MVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V + R LK + LVVE+YSR Sbjct: 174 LVNQIIDRKWVGLK-------INELLVVEYYSR 199 >gi|305672327|gb|ADM63587.1| ribosomal protein S4 [Acanthocalyx albus] Length = 163 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 2/137 (1%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 GL Q R K S + ++L KQK++ +YG ++E++ + A + +G T L+ LE Sbjct: 12 GLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKVKGSTGQVLLQLLEM 70 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + Sbjct: 71 RLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQ 130 Query: 155 EASQLAER-DVPEYISV 170 + + R ++P+++++ Sbjct: 131 NSLDSSPREELPKHLTL 147 >gi|305672201|gb|ADM63524.1| ribosomal protein S4 [Tetrapanax papyrifer] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--- 149 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 138 Query: 150 LASVLEASQLAERDVPEYISVN 171 + + L++S E +P++++++ Sbjct: 139 IQNSLDSSSYDE--LPKHLTLH 158 >gi|307602401|gb|ADN68082.1| ribosomal protein S4 [Thuja standishii] Length = 189 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 21/174 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQK++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQKLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++E+D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLINKINQNIFISEQD 142 Query: 164 ---VPEYIS-----VNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +V + RI ++ ++ LVVE+YSR Sbjct: 143 QMRVPPHLNWIKKKSQYSALVNKIIDNKRIGLNINEL---------LVVEYYSR 187 >gi|305672211|gb|ADM63529.1| ribosomal protein S4 [Alseuosmia macrophylla] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPLDTITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|299830416|ref|YP_003734631.1| ribosomal protein S4 [Kryptoperidinium foliaceum] gi|297385118|gb|ADI40416.1| ribosomal protein S4 [Kryptoperidinium foliaceum] Length = 204 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 113/213 (53%), Gaps = 17/213 (7%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQ 56 MS+ K KI RR+G L + +N PG G K + +G++L KQ Sbjct: 1 MSRYRGPKLKISRRLGTLPGLTTKKSKKLNR----PGKDGNSPDMNKKLTEYGIRLEEKQ 56 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG +SE + KEA R +G T L+ LE RLDT+ + F +I ARQ V Sbjct: 57 KLKFNYG-LSESQLFRYVKEARRRKGVTGLILLQLLEMRLDTLCFNLGFASSIAQARQLV 115 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASV-LEASQLAERDVPEYISVNHD 173 NH H+ VN + +NI S++C+ D+I VK+K SK L + L+ +Q D+P + + + Sbjct: 116 NHGHITVNNKVINIPSFQCRLKDIISVKEKSTSKNLVTTNLKNNQ--RNDLPSNLKFDAN 173 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ AT + + +D+P + LV+E YSR Sbjct: 174 SLTATVLDYCNR-EDIPLQ--LDELLVIEHYSR 203 >gi|305672357|gb|ADM63602.1| ribosomal protein S4 [Sambucus caerulea] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRMVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|305672197|gb|ADM63522.1| ribosomal protein S4 [Schefflera monticola] gi|305672209|gb|ADM63528.1| ribosomal protein S4 [Polyscias guilfoylei] gi|305672215|gb|ADM63531.1| ribosomal protein S4 [Tetraplasandra oahuensis] gi|305672233|gb|ADM63540.1| ribosomal protein S4 [Cussonia spicata] gi|305672325|gb|ADM63586.1| ribosomal protein S4 [Pseudopanax colensoi] gi|305672349|gb|ADM63598.1| ribosomal protein S4 [Aralia spinosa] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSLDSSSHDELPKHLTLH 158 >gi|293611986|gb|ADE48437.1| ribosomal protein 4 [Dioon merolae] Length = 183 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRPGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 V+ + + A + + L+++D +P ++++ H + V + + D + + ++ N L Sbjct: 120 VRDQQRSRAMIEKNLDLSQKDQMPNHLTL-HSSRYKGLV---NQIIDSKW-ISLKINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|222103460|gb|ACM44259.1| small ribosomal protein subunit 4 [Ceratodon purpureus] Length = 198 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ + +++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 156 KVPNHLTFNSLENKGLVNQI---LDQESVGLKINELLVVEYYSR 196 >gi|22854737|gb|AAN09788.1| small ribosomal protein 4 [Symblepharis lindigii] Length = 186 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 144 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 184 >gi|22854705|gb|AAN09772.1| small ribosomal protein 4 [Distichium inclinatum] Length = 191 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ +NHRH+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 89 GMASTIPGARQLINHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIEFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLQKKGLVTQI---LDRESVGLKINELLVVEYYSR 189 >gi|289599907|gb|ADD12904.1| ribosomal protein S4 [Hibbertia cuneiformis] Length = 189 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 13/197 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G TRS L Q R K S + ++L KQK++ +YG ++E++ Sbjct: 1 RRLG-SLPGLTSKRPKTRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLK 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I S Sbjct: 56 YVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 YRCK D+I VK + K A + L++S + ++P+Y++++ +I S K V Sbjct: 116 YRCKPRDIITVKDEHKSRALIQNYLDSS--SHEELPKYLTLHPFQYKGLVNQIIDS-KWV 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 173 GLKI--NELLVVEYYSR 187 >gi|222103428|gb|ACM44243.1| small ribosomal protein subunit 4 [Ceratodon purpureus] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLENKGLVNQI---LDQESVGLKINELLVVEYYSR 197 >gi|184128039|gb|ACC67919.1| ribosomal protein small subunit 4 [Angiopteris hypoleuca] gi|184128063|gb|ACC67931.1| ribosomal protein small subunit 4 [Angiopteris caudatiformis] gi|184128073|gb|ACC67936.1| ribosomal protein small subunit 4 [Archangiopteris caudata] Length = 198 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 29 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 87 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 88 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 147 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 148 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 196 >gi|92417443|gb|ABE76817.1| ribosomal protein subunit 4 [Notothylas orbicularis] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKTKGSTGLILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDCITIKDRQKSQVMITKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|305672309|gb|ADM63578.1| ribosomal protein S4 [Escallonia coquimbensis] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQILLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + QKS+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITARDEQKSRTL 138 Query: 151 -ASVLEASQLAERDVPEYISVN 171 + L++S ++P +++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTLH 158 >gi|184128013|gb|ACC67906.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128051|gb|ACC67925.1| ribosomal protein small subunit 4 [Angiopteris angustifolia] Length = 189 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 20 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 79 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 138 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 139 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 187 >gi|89112947|gb|ABD61092.1| ribosomal protein subunit 4 [Grimmia pulvinata] Length = 172 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRC+ D I +K + K + +++ +++ Sbjct: 70 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCRPQDFITIKDRQKSQSMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|89280637|ref|YP_514854.1| ribosomal protein S4 [Solanum lycopersicum] gi|91208990|ref|YP_538850.1| ribosomal protein S4 [Solanum bulbocastanum] gi|108773132|ref|YP_635641.1| ribosomal protein S4 [Solanum tuberosum] gi|90101662|sp|Q2MI98|RR4_SOLLC RecName: Full=30S ribosomal protein S4, chloroplastic gi|90101667|sp|Q2MII5|RR4_SOLBU RecName: Full=30S ribosomal protein S4, chloroplastic gi|90101668|sp|Q2VEH5|RR4_SOLTU RecName: Full=30S ribosomal protein S4, chloroplastic gi|82754629|gb|ABB90043.1| ribosomal protein S4 [Solanum tuberosum] gi|84371897|gb|ABC56215.1| ribosomal protein S4 [Solanum bulbocastanum] gi|84371985|gb|ABC56302.1| ribosomal protein S4 [Solanum lycopersicum] gi|88656806|gb|ABD47059.1| ribosomal protein S4 [Solanum tuberosum] gi|89241673|emb|CAJ32395.1| ribosomal protein S4 [Solanum lycopersicum] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKP----RTGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLAERDVPEYISVNHDNMVA 177 +LVNG V+I SYRCK D+I K QKS+ L + L++S ++P ++++ Sbjct: 116 ILVNGHIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSS--PHEELPNHLTLQPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|42794679|gb|AAS45736.1| Rps4 [Satyria cerander] Length = 211 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K + + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWIGLKI--KELLVVEYYSR 207 >gi|22854715|gb|AAN09777.1| small ribosomal protein 4 [Kiaeria starkei] Length = 191 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQTMIIKNVDFSQKA 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFHSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|548874|sp|P36470|RR4_RHAHU RecName: Full=30S ribosomal protein S4, chloroplastic gi|439964|emb|CAA82454.1| ribosomal protein S4 [Rhapis humilis] Length = 196 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPKS-------GSDLKTQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASPPPE-ELPKHLTID 167 >gi|305672347|gb|ADM63597.1| ribosomal protein S4 [Acicarpha tribuloides] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTL 157 >gi|3914844|sp|O20106|RR4_CYPSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292831|emb|CAA92552.1| ribosomal protein S4 [Cypella sp. 'Lejeune 1997'] Length = 194 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHMAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKERSKVL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K V + LVVE+YSR Sbjct: 141 IQNYIASSSHE-ELPNHLTIDPLQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 192 >gi|32401814|gb|AAP80895.1| small ribosomal protein 4 [Viburnum betulifolium] Length = 184 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + +Q + Sbjct: 71 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITA--RDEQNSR 128 Query: 153 VLEASQL---AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VL + L ++P++++++ +I S K V + LVVE+YSR Sbjct: 129 VLIQNSLDSSPHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|42794683|gb|AAS45738.1| Rps4 [Satyria leucostoma] Length = 211 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIIPAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|67035612|gb|AAY62737.1| small ribosomal protein subunit 4 [Dicranella heteromalla] Length = 190 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SY CK D I +K + K A + + L+++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNNRIVNIPSYHCKPQDFITIKDREKSQAMITKNVDLSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|63191881|gb|AAY34900.1| small ribosomal protein subunit 4 [Hyophiladelphus agrarius] Length = 194 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVLFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESVGLKINELLVVEYYSR 192 >gi|157689572|gb|ABV65342.1| ribosomal protein S4 [Terminalia catappa] Length = 181 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 21/183 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + K A Sbjct: 68 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRMVDIPSYRCKPRDIITARDDQKSRAM 127 Query: 153 VLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + + +VP++++++ P K V +I + LVVE+ Sbjct: 128 IQNYLDSYSHEEVPKHLTLH-----------PFQSKGVVNQIIDSKWVGLKINELLVVEY 176 Query: 204 YSR 206 YSR Sbjct: 177 YSR 179 >gi|22854713|gb|AAN09776.1| small ribosomal protein 4 [Holomitrium cylindraceum] Length = 191 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIYFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKRGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|305672225|gb|ADM63536.1| ribosomal protein S4 [Adoxa moschatellina] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 6/139 (4%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 23 LRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 81 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + Sbjct: 82 LDNILFRLGMAPTIPGARQLVNHRHILVNGRMVDIPSYRCKPRDIITARDEQNSRALIQN 141 Query: 154 -LEASQLAERDVPEYISVN 171 LE+S ++P++++++ Sbjct: 142 SLESS--PHEELPKHLTLH 158 >gi|270307867|ref|YP_003329925.1| ribosomal protein S4 [Dehalococcoides sp. VS] gi|270153759|gb|ACZ61597.1| ribosomal protein S4 [Dehalococcoides sp. VS] Length = 207 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 27/220 (12%) Query: 1 MSKRESSKHKIDRRIGENLW-------------GRPKSPVNTRSYGPGLHGQRRKSKPSY 47 MS+ + ++ RR G+ L+ RPK+P GP L RR S Sbjct: 1 MSRETGAVCRMCRRSGDKLFLKGDKCVTKCVFEKRPKAP------GPQLGRPRRLSDR-- 52 Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 G QLR KQ ++ YG ++E++FR F A+ G T N++ LE RLD +++R F Sbjct: 53 -GQQLRQKQSIRWSYG-MTERQFRRFFGLANAQPGVTGDNMMILLERRLDNVLFRLGFGT 110 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPE 166 + ARQ V H H+LVNG+ +I SY KEG VI V++ SK A A + + +P Sbjct: 111 SRAQARQIVMHGHILVNGQKTDIPSYLIKEGQVITVRETSKATAYFKTLAENIEAKAIPG 170 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++S++ + + +P++ D+ Q VVE+YSR Sbjct: 171 WLSLDRKTLSGKVISLPAA-GDIDARFDAQT--VVEYYSR 207 >gi|16565359|gb|AAL26198.1|AF313591_1 small ribosomal protein 4 [Angiopteris evecta] gi|184128009|gb|ACC67904.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128029|gb|ACC67914.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128045|gb|ACC67922.1| ribosomal protein small subunit 4 [Angiopteris angustifolia] gi|184128047|gb|ACC67923.1| ribosomal protein small subunit 4 [Angiopteris angustifolia] gi|184128065|gb|ACC67932.1| ribosomal protein small subunit 4 [Angiopteris caudatiformis] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++ + DN FV + + + LVVE+YSR Sbjct: 154 QIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 197 >gi|313183824|ref|YP_004021667.1| ribosomal protein S4 [Prunus persica] gi|309321436|gb|ADO64977.1| ribosomal protein S4 [Prunus persica] Length = 201 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKP----RAGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN---HDNMV 176 +LVNGR V+I SYRCK D+I V+ + K A + R ++P++++++ ++ +V Sbjct: 116 ILVNGRIVDIPSYRCKTRDIITVRDEQKSRALIQNYLDSPPREELPKHLTLHPFQYEGLV 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + D + V ++ N LVVE+YSR Sbjct: 176 NQII-------DSKW-VGLKINELLVVEYYSR 199 >gi|305672355|gb|ADM63601.1| ribosomal protein S4 [Heteromorpha arborescens var. abyssinica] Length = 173 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEA-SQLAERDVPEYISV 170 + + ++ ++P+++++ Sbjct: 139 IQNSFDSSSQEELPKHLTL 157 >gi|293612018|gb|ADE48453.1| ribosomal protein 4 [Zamia acuminata] Length = 183 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 18/189 (9%) Query: 22 RPKS---PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 RPKS P N SY K S + ++L KQK++ +YG ++E++ + A Sbjct: 7 RPKSINDPTNQSSY----------RKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAG 55 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 R++G T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK Sbjct: 56 RAKGSTGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPR 115 Query: 139 DVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQP 197 DVI V+ + + A + + L+++D +P +++++ +I S K + + Sbjct: 116 DVITVRDQQRSRAMIDKNLDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NE 172 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 173 LLVVEYYSR 181 >gi|254995537|emb|CAO82726.1| ribosomal protein S4 [Lycopodium habereri] gi|254995557|emb|CAO82736.1| ribosomal protein S4 [Diphasiastrum tristachyum] Length = 168 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 17/170 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 7 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 65 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ A + + ++ ++ Sbjct: 66 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITARDRSESQAIIAKNNEFSQTY 125 Query: 163 DVPEYI---SVNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + I S++ ++ LVVE+YSR Sbjct: 126 KIPNHLTLHSLQNKGLVNKIIDRESIDSNINEL---------LVVEYYSR 166 >gi|146261555|gb|ABQ15087.1| ribosomal protein S4 [Corylopsis pauciflora] Length = 185 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 13 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYIRIAGKAKGSTGQVLLQLL 71 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 72 EMRLDNILFRLGMTSTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSTAL 131 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 132 IQNYLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 183 >gi|118577607|gb|ABL07169.1| small ribosomal protein 4 [Piper mutabile] Length = 178 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + R+ Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 2 RPRSESSLRT-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 53 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 54 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 113 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + V + A R ++P++++++ +I S K V + LV Sbjct: 114 TTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 170 Query: 201 VEFYSR 206 VE+YSR Sbjct: 171 VEYYSR 176 >gi|118577546|gb|ABL07139.1| small ribosomal protein 4 [Peperomia obtusifolia] Length = 183 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 13/186 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 6 KRPVSESS----LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T H L+ LE RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I Sbjct: 61 TGHVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITT 120 Query: 144 KQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LV 200 + K V + A R ++P+++++ + + I + + D + V ++ N LV Sbjct: 121 RNAQKSKVLVQNSMDSASREELPKHLTLES----SQYKGIVNQIIDSKW-VGLKINELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|32401757|gb|AAP80867.1| small ribosomal protein 4 [Zamia pumila] Length = 190 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 8 PGLTNKRPKSINDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 66 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 67 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 126 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 127 VRDQQRSRAMIDKNIDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 183 Query: 202 EFYSR 206 E+YSR Sbjct: 184 EYYSR 188 >gi|67035610|gb|AAY62736.1| small ribosomal protein subunit 4 [Eccremidium floridanum] Length = 199 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNLDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|33413207|emb|CAD86739.1| ribosomal protein small subunit 4 [Cheilothela chloropus] Length = 185 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKNRQKSQAMIIKNLTFSQKA 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLENKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|157689480|gb|ABV65296.1| ribosomal protein S4 [Guaiacum officinale] Length = 195 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 10/132 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ NTR+ Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 20 RPKARTNTRN-------QSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 71 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ +E RLD I++R TI ARQFVNHRH+LVN R VNI SYRCK D+I Sbjct: 72 GSTGQVLLQLIEMRLDNILFRLGMALTIPQARQFVNHRHILVNDRIVNIPSYRCKPRDII 131 Query: 142 EVK--QKSKQLA 151 V+ QKS+ L Sbjct: 132 TVRDDQKSRTLV 143 >gi|67035656|gb|AAY62759.1| small ribosomal protein subunit 4 [Ceratodon purpureus] gi|67035658|gb|AAY62760.1| small ribosomal protein subunit 4 [Ceratodon purpureus] gi|67035660|gb|AAY62761.1| small ribosomal protein subunit 4 [Ceratodon purpureus] Length = 194 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLENKGLVNQI---LDQESVGLKINELLVVEYYSR 192 >gi|305672373|gb|ADM63610.1| ribosomal protein S4 [Echinops bannaticus] Length = 173 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTL 157 >gi|184128021|gb|ACC67910.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 186 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 17 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 76 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 135 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 136 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 184 >gi|156598174|gb|ABU85351.1| ribosomal protein S4 [Elaeis oleifera] Length = 201 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPKS-------GSDLKTQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNG V+I SYRCK D+I KQ+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGHIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASPPPE-ELPKHLTIDSFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 YKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|42794671|gb|AAS45732.1| Rps4 [Psammisia sodiroi] Length = 209 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 9/170 (5%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQ ++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQNLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL-----ASVLEA 156 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L ++ + Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 205 >gi|32879549|emb|CAE11885.1| ribosomal protein S4 [Cyanixia socotrana] Length = 174 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 13 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 71 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 72 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 131 Query: 151 ASVLEASQLAERDVPEYISVN 171 +S ++P +++++ Sbjct: 132 IQNFISSSPHLEELPNHLTID 152 >gi|20531098|gb|AAM27370.1| ribosomal protein 4 [Timmiella crassinervis] gi|22854741|gb|AAN09790.1| small ribosomal protein 4 [Timmiella crassinervis] gi|33413243|emb|CAD86756.1| ribosomal protein small subunit 4 [Timmiella anomala] Length = 186 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIITKNIEFFQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 144 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|184128007|gb|ACC67903.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128017|gb|ACC67908.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128033|gb|ACC67916.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128053|gb|ACC67926.1| ribosomal protein small subunit 4 [Angiopteris boninensis] gi|184128057|gb|ACC67928.1| ribosomal protein small subunit 4 [Angiopteris durvilleana] gi|184128067|gb|ACC67933.1| ribosomal protein small subunit 4 [Angiopteris smithii] gi|184128071|gb|ACC67935.1| ribosomal protein small subunit 4 [Archangiopteris hokouensis] Length = 190 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 21 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 80 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 139 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 140 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 188 >gi|310659475|ref|YP_003937196.1| 30S ribosomal protein S4 [Clostridium sticklandii DSM 519] gi|308826253|emb|CBH22291.1| 30S ribosomal subunit protein S4 [Clostridium sticklandii] Length = 207 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR G L+ + K R+Y PG HGQ RK K S +G QLR Sbjct: 1 MARYTDSSCRLCRREGMKLFLKGDRCYTDKCAFAKRAYAPGQHGQGRK-KVSNYGEQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL++ LE RLD +VYR + ARQ Sbjct: 60 KQKVKRIYG-VLETQFRLTFERAEKMQGMAGENLLNLLERRLDNVVYRMGLAASRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H +NG NI S GDVI VK+ S+ + + + R P+++ V+ ++ Sbjct: 119 LVRHGHFNLNGHKANIPSMTISVGDVITVKETSRSSVKIKSLVENSTRVAPKWLDVSLES 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M A V P+ +D+ V +L+VE YS+ Sbjct: 179 MSAKMVANPTR-EDIDLEV--AEHLIVELYSK 207 >gi|254995523|emb|CAO82719.1| ribosomal protein S4 [Diphasiastrum alpinum] gi|254995525|emb|CAO82720.1| ribosomal protein S4 [Diphasiastrum alpinum] gi|254995527|emb|CAO82721.1| ribosomal protein S4 [Diphasiastrum complanatum] gi|254995529|emb|CAO82722.1| ribosomal protein S4 [Diphasiastrum complanatum] gi|254995533|emb|CAO82724.1| ribosomal protein S4 [Diphasiastrum complanatum] gi|254995535|emb|CAO82725.1| ribosomal protein S4 [Diphasiastrum digitatum] gi|254995539|emb|CAO82727.1| ribosomal protein S4 [Lycopodium henryanum] gi|254995541|emb|CAO82728.1| ribosomal protein S4 [Lycopodium issleri] gi|254995543|emb|CAO82729.1| ribosomal protein S4 [Lycopodium issleri] gi|254995545|emb|CAO82730.1| ribosomal protein S4 [Lycopodium madeirense] gi|254995549|emb|CAO82732.1| ribosomal protein S4 [Diphasiastrum oellgaardii] gi|254995553|emb|CAO82734.1| ribosomal protein S4 [Diphasiastrum sitchense] gi|254995555|emb|CAO82735.1| ribosomal protein S4 [Lycopodium thyoides] gi|254995559|emb|CAO82737.1| ribosomal protein S4 [Diphasiastrum tristachyum] gi|254995561|emb|CAO82738.1| ribosomal protein S4 [Lycopodium veitchii] gi|254995563|emb|CAO82739.1| ribosomal protein S4 [Lycopodium wightianum] gi|254995565|emb|CAO82741.1| ribosomal protein S4 [Lycopodium zeilleri] gi|254995567|emb|CAO82742.1| ribosomal protein S4 [Lycopodium zeilleri] gi|255977012|emb|CAO82740.1| ribosomal protein S4 [Lycopodium zanclophyllum] Length = 172 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 17/170 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ A + + ++ ++ Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITARDRSESQAIIAKNNEFSQTY 129 Query: 163 DVPEYI---SVNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + I S++ ++ LVVE+YSR Sbjct: 130 KIPNHLTLHSLQNKGLVNKIIDRESIDSNINEL---------LVVEYYSR 170 >gi|11228623|gb|AAG33097.1| small ribosomal protein 4 [Campylopus atrovirens] Length = 191 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 89 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIAKNLEFSQ-- 146 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 147 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 189 >gi|169794075|ref|YP_001718439.1| ribosomal protein S4 [Manihot esculenta] gi|157695887|gb|ABV66156.1| ribosomal protein S4 [Manihot esculenta] Length = 201 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RVGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-VTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + + K A + L++S + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRAMIQNDLDSS--PQEELPKHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|33413225|emb|CAD86748.1| ribosomal protein small subunit 4 [Oncophorus wahlenbergii] Length = 188 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKT 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 186 >gi|283794865|ref|YP_003359218.1| ribosomal protein S4 [Cryptomonas paramecium] gi|253981837|gb|ACT46754.1| ribosomal protein S4 [Cryptomonas paramecium] Length = 202 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR G +L G + N R + PG HG + + + S + ++L KQK+K Sbjct: 1 MSRYRGAALRIVRRFG-SLPGLTRKTTN-RKHRPGQHGSKHR-RLSEYAIRLDEKQKIKF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ + K+A R +G T L+ LE RLD V+R PTI AARQ V H H Sbjct: 58 NYG-LSERQLFNYVKKARRIQGSTGQALLQLLEMRLDNTVFRLGMAPTIPAARQLVTHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQ--KSKQLAS-VLEASQLAERDVPEYISVNHDNMVA 177 + +N + V+I SY+C GD+I++K KSK+L + + LA + P ++ ++ Sbjct: 117 IYLNTKRVSIPSYQCSAGDIIKIKDSPKSKKLVTDYISFPGLA--NAPTHLELDK----T 170 Query: 178 TFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 TF + + + + I + LVVE YSR Sbjct: 171 TFTGVVKGIVEREWVGINLNELLVVEHYSR 200 >gi|146261587|gb|ABQ15103.1| ribosomal protein S4 [Micranthes integrifolia] Length = 173 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG I+E++ + A +++G T L+ L Sbjct: 1 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIAGKAKGSTGQVLLQLL 59 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I K QKS+ L Sbjct: 60 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITAKDEQKSRTL 119 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P+Y++++ +I + + + + LVVE+YSR Sbjct: 120 IQNSLDSS--PHEELPKYLTLHPLQQKGLVNQI---IDNKWVGLKINELLVVEYYSR 171 >gi|28194767|gb|AAO33645.1|AF481000_1 ribosomal protein S4 [Tortula subulata] Length = 194 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRKKSQVMITKNVDFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N+ +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNYLEKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|48927211|emb|CAE47541.1| small ribosomal protein 4 [Equisetum ramosissimum subsp. debile] Length = 207 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+ +NL G V ++ Q + K S +G++L AKQ+++ Sbjct: 1 MSRYRGPRLRIIRRL-QNLPGLTNKLVESKKKKVSGSDQSIQKKVSQYGIRLEAKQRLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + + A ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH Sbjct: 60 NYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV---KQKSKQLASVLEASQLAERDVPEY--ISVNHDNM 175 +LVN R V++ S+ CK D+I + K L+ LE+ A+ +PE+ +S++ Sbjct: 119 ILVNNRIVDVPSFHCKPKDIITIGAPKTYQSILSKRLES--FAKDQIPEHLTLSLSEPKK 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV + + + + LVVE+YSR Sbjct: 177 PKGFVNYLINRESIGLKI--NELLVVEYYSR 205 >gi|146261577|gb|ABQ15098.1| ribosomal protein S4 [Penthorum sedoides] Length = 196 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 21/183 (11%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 24 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 82 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 83 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAM 142 Query: 153 VLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEF 203 + L+ ++P+++++ P K + +I + LVVE+ Sbjct: 143 IQNYLDLSPHEELPKHLTLQ-----------PFQYKGLVNQIIDKNWVGLKINELLVVEY 191 Query: 204 YSR 206 YSR Sbjct: 192 YSR 194 >gi|16565393|gb|AAL26211.1|AF313611_1 small ribosomal protein 4 [Ginkgo biloba] Length = 185 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 18/189 (9%) Query: 22 RPKS---PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 RPKS P+N S G K S + ++L KQK++ +YG ++E++ + A Sbjct: 8 RPKSGNDPINRSSSG----------KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE R D I++R+ TI ARQ VNHRH+LVN R V+I SYRCK Sbjct: 57 KAKGSTGQVLLQLLEMRSDNIIFRSGMALTIPGARQLVNHRHLLVNDRVVDIPSYRCKPQ 116 Query: 139 DVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQP 197 DVI ++ + + A + L++RD +P +++++ RI S K + + Sbjct: 117 DVITIRDQQRSRAIIKNNINLSQRDKMPNHLTLHSSQYKGLVNRIIDS-KWINLKI--NE 173 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 174 LLVVEYYSR 182 >gi|33413161|emb|CAD86717.1| ribosomal protein small subunit 4 [Dryptodon patens] Length = 181 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ ++ Sbjct: 79 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFYQKY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 139 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 179 >gi|157689410|gb|ABV65261.1| ribosomal protein S4 [Alnus viridis subsp. sinuata] Length = 197 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R SK S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 25 GSDLRNQSRSSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 83 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 84 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPHDIITARDEQKSRAL 143 Query: 151 -ASVLEASQLAERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + L++S ++P+++++ + +V + D + V ++ N LVVE+Y Sbjct: 144 IQNYLDSS--PREELPKHLTLQPFQYKGLVNQII-------DSQW-VGLKINELLVVEYY 193 Query: 205 SR 206 SR Sbjct: 194 SR 195 >gi|14090484|gb|AAK53527.1| small ribosomal protein 4 [Campylopus eberhardtii] Length = 182 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K + + + + +++ Sbjct: 80 GMAPTIPGARQLVNHRHVLVNNXIVNIPSYRCKPQDFITIKXRQKSQSMIAKNVEFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKKGLVNQI---LXHESIGLNINELLVVEYYSR 180 >gi|165936370|ref|ZP_02224938.1| 30S ribosomal protein S4 (BS4) [Yersinia pestis biovar Orientalis str. IP275] gi|165915486|gb|EDR34095.1| 30S ribosomal protein S4 (BS4) [Yersinia pestis biovar Orientalis str. IP275] Length = 131 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 4/134 (2%) Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +KEA R +G+T NL+ LE RLD +VYR F T +RQ V+H+ ++VNGR VNI SY Sbjct: 1 YKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVSHKAIMVNGRVVNIASY 60 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 + DV+ +++K+K+ + V A +LAE R+ P ++ V+ M F RIP D+ Sbjct: 61 QVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAVKMEGVFKRIPER-TDLSAD 119 Query: 193 VIMQPNLVVEFYSR 206 + +L+VE YS+ Sbjct: 120 I--NEHLIVELYSK 131 >gi|160415790|gb|ABX39202.1| small ribosomal protein 4 [Dryptodon patens] Length = 188 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|33413213|emb|CAD86741.1| ribosomal protein small subunit 4 [Ditrichum heteromallum] Length = 187 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I K + K A +++ + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITSKNRPKSQAMIIKNVEFYQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 145 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 185 >gi|22854685|gb|AAN09762.1| small ribosomal protein 4 [Ceratodon purpureus] Length = 186 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 144 KVPNHLTFNSLENKGLVNQI---LDQESVGLKINELLVVEYYSR 184 >gi|322719543|gb|ADX07708.1| small ribosomal protein subunit 4 [Grimmia unicolor] gi|322719545|gb|ADX07709.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719547|gb|ADX07710.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719549|gb|ADX07711.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719551|gb|ADX07712.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719553|gb|ADX07713.1| small ribosomal protein subunit 4 [Grimmia donniana] Length = 198 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++++ Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFQL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQESQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|186920132|ref|YP_001874786.1| ribosomal protein S4 [Hemiselmis andersenii] gi|186461078|gb|ACC78240.1| ribosomal protein S4 [Hemiselmis andersenii] Length = 275 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 100/163 (61%), Gaps = 8/163 (4%) Query: 1 MSKRESSKHKIDRRIG---ENLWG--RPKSPVNTRSYGP-GLHGQRRKSKPSYFGLQLRA 54 M+KR +SK K+ + I +NLW R + + R P + +++ ++ S FG L Sbjct: 1 MTKRLNSKFKVCKNIKGNRKNLWAVVRAITFRSIRILKPDSISVKQKLNRISSFGKYLNG 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ + K+Y +ISEK F+S+ ++A++S+ T LIS LESRLD ++YR+ FV ++ ARQ Sbjct: 61 KQNLIKFYCNISEKLFQSLLQQAEKSKPKTIDKLISLLESRLDVVLYRSGFVNSLHMARQ 120 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLE 155 +NH + +N ++V + K GD++E+K+ K+L ++L+ Sbjct: 121 LINHGFICINSKTVYNLNITLKSGDIVEIKRDFPIKELITILK 163 >gi|157689492|gb|ABV65302.1| ribosomal protein S4 [Humiria balsamifera] Length = 189 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 104/178 (58%), Gaps = 11/178 (6%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 17 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLL 75 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 76 EMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITARGEQKSRAM 135 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + L++S + ++P++++++ + + + + D+ + + + LVVE+YSR Sbjct: 136 IQNYLDSS--PQEELPKHLTLHP----FQYKGVVNQIIDIKWIGLKINELLVVEYYSR 187 >gi|42794648|gb|AAS45721.1| Rps4 [Disterigma alaternoides] Length = 211 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRNRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|28194687|gb|AAO33605.1|AF480960_1 ribosomal protein S4 [Leptophascum leptophyllum] Length = 196 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K A + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQAMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLEINELLVVEYYSR 194 >gi|11228627|gb|AAG33099.1| small ribosomal protein 4 [Dicranella heteromalla] Length = 191 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SY CK D I +K + K A + + L+++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNNRIVNIPSYHCKPQDFITIKDREKSQAMITKNVDLSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|322719491|gb|ADX07682.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719493|gb|ADX07683.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719495|gb|ADX07684.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719497|gb|ADX07685.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719499|gb|ADX07686.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719501|gb|ADX07687.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719529|gb|ADX07701.1| small ribosomal protein subunit 4 [Racomitrium lanuginosum] gi|322719531|gb|ADX07702.1| small ribosomal protein subunit 4 [Racomitrium lanuginosum] Length = 198 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|184128003|gb|ACC67901.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 177 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 8 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 66 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 67 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 126 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 127 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 175 >gi|77019185|emb|CAH60198.1| chloroplast 30S ribosomal protein S4 [Grimmia meridionalis] Length = 182 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKDRQKSQSMIIKNMDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|307326779|ref|ZP_07605971.1| ribosomal protein S4 [Streptomyces violaceusniger Tu 4113] gi|306887542|gb|EFN18536.1| ribosomal protein S4 [Streptomyces violaceusniger Tu 4113] Length = 203 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Y DISE Sbjct: 7 KVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQTSDY-KVRLLEKQRLRAQY-DISE 64 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A ++ G T L+ LE RLD +V R+ TI+ +RQ V H H+ VNGR Sbjct: 65 RQMARAYDRARKAGGKTGEALVIELERRLDALVLRSGIARTIYQSRQMVTHGHIEVNGRK 124 Query: 128 VNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 V+ S+R + DV+ V+++S+ E + + P Y+ V N++A R+ Sbjct: 125 VDKPSFRVRPDDVVMVRERSRDKHPFQVAREGGYAPDGETPRYLQV---NLMALAFRLDR 181 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 PVI LVVE+Y+R Sbjct: 182 DPNRKEIPVICDEQLVVEYYAR 203 >gi|305672231|gb|ADM63539.1| ribosomal protein S4 [Billardiera heterophylla] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSLDSSPHDELPKHLTLH 158 >gi|305672213|gb|ADM63530.1| ribosomal protein S4 [Phyllonoma laticuspis] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 86/137 (62%), Gaps = 2/137 (1%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 + Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 23 IRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 81 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R PTI ARQ VNHRH+LVNGR V+I S+RCK D+I + + K +A + + Sbjct: 82 LDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTRDEQKSIARIQK 141 Query: 156 ASQLAERD-VPEYISVN 171 + + + VP++++++ Sbjct: 142 SLDSSPHEAVPKHLTLH 158 >gi|67035558|gb|AAY62710.1| small ribosomal protein subunit 4 [Astomiopsis kieneri] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKARQKSRAMIIKNVEFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 197 >gi|184128011|gb|ACC67905.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 175 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 6 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 64 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 65 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 124 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 125 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 173 >gi|157689564|gb|ABV65338.1| ribosomal protein S4 [Stylobasium spathulatum] Length = 195 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 82 EMRLDNIIFRLGMASTIPQARQLVNHRHILVNGRMVDIPSYRCKPQDIITARDEQKSRAL 141 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P+++++ +I S K V + LVVE+YSR Sbjct: 142 IQNYLDSS--PREELPKHLTLQPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 193 >gi|33413223|emb|CAD86747.1| ribosomal protein small subunit 4 [Dicranoweisia crispula] Length = 188 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNRQKSQAIISKNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLQKKGLVNQI---LDRESIDLKINELLVVEYYSR 186 >gi|24473842|gb|AAL82765.1| small ribosomal subunit protein 4 [Plagiobryum demissum] Length = 195 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQ-- 150 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 EY + NH + F++ + L + + LVVE+YSR Sbjct: 151 --EYKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 193 >gi|77019157|emb|CAH60184.1| chloroplast 30S ribosomal protein S4 [Grimmia ramondii] Length = 182 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + +++ ++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFYQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 180 >gi|62287266|sp|Q6H9L0|RR4_EQULA RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927203|emb|CAE47537.1| small ribosomal protein 4 [Equisetum laevigatum] gi|48927205|emb|CAE47538.1| small ribosomal protein 4 [Equisetum myriochaetum] Length = 207 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 116/211 (54%), Gaps = 11/211 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+ +NL G V ++ Q + K S +G++L AKQ+++ Sbjct: 1 MSRYRGPRLRIIRRL-QNLPGLTNKLVESKKNKVSGSDQSIQKKVSQYGIRLEAKQRLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + + A ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH Sbjct: 60 NYG-LTERQLLNYVRIARGAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV---KQKSKQLASVLEASQLAERDVPEY--ISVNHDNM 175 +LVN R V++ S+ CK D+I + K L+ LE+ A+ +PE+ +S++ Sbjct: 119 ILVNNRIVDVPSFHCKPKDIITIGAPKTYQSILSKRLES--FAKDQIPEHLTLSLSEPKK 176 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV + + + + LVVE+YSR Sbjct: 177 PKGFVNYLINRESIGLKI--NELLVVEYYSR 205 >gi|125662706|gb|ABN50303.1| small ribosomal protein 4 [Ginkgo biloba] Length = 185 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 18/189 (9%) Query: 22 RPKS---PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 RPKS P+N S G K S + ++L KQK++ +YG ++E++ + A Sbjct: 9 RPKSGNDPINRSSSG----------KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAR 57 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE R D I++R+ TI ARQ VNHRH+LVN R V+I SYRCK Sbjct: 58 KAKGSTGQVLLQLLEMRSDNIIFRSGMALTIPGARQLVNHRHLLVNDRVVDIPSYRCKPQ 117 Query: 139 DVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQP 197 DVI ++ + + A + L++RD +P +++++ RI S K + + Sbjct: 118 DVITIRDQQRSRAIIKNNINLSQRDKMPNHLTLHSSQYKGLVNRIIDS-KWINLKI--NE 174 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 175 LLVVEYYSR 183 >gi|157689526|gb|ABV65319.1| ribosomal protein S4 [Neurada procumbens] Length = 192 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 106/179 (59%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRSQSRPGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 79 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 138 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S ++P++++++ + + + + D + V ++ N LVVE+YSR Sbjct: 139 IQNYLDSS--THEELPKHLTLH----TLQYKGLVNQIIDRKW-VGLKINELLVVEYYSR 190 >gi|67035690|gb|AAY62776.1| small ribosomal protein subunit 4 [Ochrobryum gardneri] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIAKNIEFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LNNESIGLKINELLVVEYYSR 197 >gi|293612022|gb|ADE48455.1| ribosomal protein 4 [Zamia furfuracea] gi|293612026|gb|ADE48457.1| ribosomal protein 4 [Zamia katzeriana] gi|293612028|gb|ADE48458.1| ribosomal protein 4 [Zamia lacandona] gi|293612030|gb|ADE48459.1| ribosomal protein 4 [Zamia loddigesii] gi|293612032|gb|ADE48460.1| ribosomal protein 4 [Zamia paucijuga] gi|293612034|gb|ADE48461.1| ribosomal protein 4 [Zamia picta] gi|293612036|gb|ADE48462.1| ribosomal protein 4 [Zamia spartea] gi|293612038|gb|ADE48463.1| ribosomal protein 4 [Zamia standleyi] Length = 183 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSINDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 VRDQQRSRAMIDKNLDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|6002063|emb|CAA58938.1| ribosomal protein S4 [Luzula sylvatica] Length = 200 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 5/136 (3%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K P + L KQK++ +YG ++E++ + A +S+G T L+ LE RLD I Sbjct: 37 RYKKIPKQYNNCLIEKQKLRFHYG-LTERQLVRYIRIAGKSKGSTGQVLLQLLEMRLDNI 95 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA--SVLE 155 ++R TI ARQ VNHRH+LVNGR V+I SYRCK GD+I K QKSK L + Sbjct: 96 LFRLSMAWTIREARQLVNHRHILVNGRIVDIPSYRCKPGDIIATKDNQKSKDLIRRCIGL 155 Query: 156 ASQLAERDVPEYISVN 171 Q +R +P+++S+N Sbjct: 156 TRQRKKRLLPKHLSIN 171 >gi|255659528|ref|ZP_05404937.1| ribosomal protein S4 [Mitsuokella multacida DSM 20544] gi|260848081|gb|EEX68088.1| ribosomal protein S4 [Mitsuokella multacida DSM 20544] Length = 197 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R K S +G QL+ KQK K YG + EK+FR + +A + +G T NL+ LE RLD Sbjct: 33 RRTNRKVSEYGTQLKEKQKAKFIYG-VLEKQFRGYYDKAKKMQGVTGENLLGLLERRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +VYR T ARQ V H H VNG+ V+I S GDVI V +KS+ A E + Sbjct: 92 VVYRLGLANTRRQARQLVRHGHFTVNGKRVDIPSALVNAGDVIAVAEKSQSNAFFKELKE 151 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P ++ + N+ T R P+ ++ PV Q +VE YS+ Sbjct: 152 SSNALSAPAWLQADQANLTGTVTRFPNR-DEIDVPVNEQA--IVELYSK 197 >gi|184128015|gb|ACC67907.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 182 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 13 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 71 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 72 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 131 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 132 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 180 >gi|184128005|gb|ACC67902.1| ribosomal protein small subunit 4 [Angiopteris evecta] gi|184128023|gb|ACC67911.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 181 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 12 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 70 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 71 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 130 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 131 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 179 >gi|193216910|ref|YP_002000152.1| ribosomal protein S4 [Mycoplasma arthritidis 158L3-1] gi|226699091|sp|B3PN46|RS4_MYCA5 RecName: Full=30S ribosomal protein S4 gi|193002233|gb|ACF07448.1| ribosomal protein S4 [Mycoplasma arthritidis 158L3-1] Length = 200 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 23/214 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ S K RR G +L K + R+ PG HG RR KPS + L L KQK+ Sbjct: 1 MSRFLGSIFKKSRRYGISLLENNKEFTKGKKRTTAPGQHGARR-VKPSDYQLHLYEKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++E++F+ ++ A + +G T L+ +ESRLD +V+RA F T ARQFVNH Sbjct: 60 RYMYG-LNERQFKHLYSIASKKQGVTGVILLQMIESRLDNLVFRAGFARTRAQARQFVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVK---QKSKQLASVLEASQLAERDVPEYISVNHDNM 175 H V+G NI S K G VIE+K Q S Q+ +EA ++ + + Sbjct: 119 GHFTVDGHKANIPSMVIKVGSVIEMKPSLQTSPQVKDAVEAMTVSP-------WLTKTDF 171 Query: 176 VATFVRIPSS---LKDVPYPVIMQPNLVVEFYSR 206 TF R+P KD+ L+VE+Y+R Sbjct: 172 KVTFNRLPERKEFAKDI------NEALIVEYYNR 199 >gi|42794701|gb|AAS45746.1| Rps4 [Sphyrospermum ellipticum] Length = 211 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I + Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIXF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIIXAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|33413205|emb|CAD86738.1| ribosomal protein small subunit 4 [Ceratodon purpureus] Length = 182 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ + +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNDNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLENKGLVNQI---LDQESVGLKINELLVVEYYSR 180 >gi|28194833|gb|AAO33678.1|AF481033_1 ribosomal protein S4 [Barbula ehrenbergii] Length = 196 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K V + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRKKSQVMVTKNLNFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|11228619|gb|AAG33095.1| small ribosomal protein 4 [Campylopus areodictyon] Length = 191 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 89 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFIXIKNRQKSQSIIARNLEFSQ-- 146 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 147 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 189 >gi|67035666|gb|AAY62764.1| small ribosomal protein subunit 4 [Atractylocarpus longisetus] Length = 198 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 96 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQ-- 153 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 154 KYKVPNHLTFNSLKKKGLVNQI---LNHESIGLNINELLVVEYYSR 196 >gi|3098150|gb|AAC15523.1| small ribosomal protein 4 [Bryobrittonia longipes] Length = 196 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG VNI SYRCK D I +K + K A +++ +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNGCIVNIPSYRCKPQDFITIKDRQKSQAILIKNIDFSQKY 153 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ S+ +V + R LK + LVVE+YSR Sbjct: 154 KVPNHLTFDSLQKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|156598368|gb|ABU85444.1| ribosomal protein S4 [Musa acuminata] Length = 201 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 23/214 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYI---SVNH 172 NHRH+LVNGR V+I SYRCK D+I K K + A + L+ ++P+++ S + Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIALSPPEELPKHLTFDSFQY 171 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V I S D+ + LVVE+YSR Sbjct: 172 KGVVNQI--IDSKWIDLK----INELLVVEYYSR 199 >gi|11228621|gb|AAG33096.1| small ribosomal protein 4 [Campylopus argyrocaulon] Length = 191 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 89 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQ-- 146 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 147 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 189 >gi|317125841|ref|YP_004099953.1| 30S ribosomal protein S4P [Intrasporangium calvum DSM 43043] gi|315589929|gb|ADU49226.1| SSU ribosomal protein S4P [Intrasporangium calvum DSM 43043] Length = 202 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 23/215 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+ +L G K+ R + PG HG+RR + Y QL+ KQ+ + Sbjct: 1 MARYTGPITKKSRRLKMDLVGGDKN-FELRPFPPGQHGRRRIQEKEYL-TQLQEKQRARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F +KEA R G T NL+ LESRLD +VYRA T ARQ V H H Sbjct: 59 AYG-VMEKQFVRYYKEAARRPGKTGENLLQILESRLDNVVYRAGLARTRRHARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VNG V++ SYR ++ DV+ V+++S + A Q +R P ++ V Sbjct: 118 FEVNGVRVDVPSYRVEQFDVVTVRKQSVETFPFELARQTFGDRTPPAWMHV--------- 168 Query: 180 VRIPSSLKDVPY--PVIMQ------PNLVVEFYSR 206 +P SL+ + + PV Q L+VE YS+ Sbjct: 169 --VPGSLQILIHQLPVRAQIDSQLTEQLIVELYSK 201 >gi|293612020|gb|ADE48454.1| ribosomal protein 4 [Zamia angustifolia] Length = 183 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSINDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 VRDQQRSRAMIDKNIDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|295136984|ref|YP_003587530.1| ribosomal protein S4 [Pisum sativum] gi|293338556|gb|ADE43529.1| ribosomal protein S4 [Pisum sativum] Length = 197 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 27/214 (12%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P TR P Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-------LPGLTRKELPVGSEQSRSSKKSQYRIRLEEKQKLRF 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 54 HYG-LTERQLLKYVRIAGKAKGSTGEVLLQLLEMRLDNILFRLGMAATIPQARQLVNHRH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNGR V+I SYRCK D+I K K + + + A R + T + Sbjct: 113 VLVNGRIVDIPSYRCKPEDIITAKDDKKSRTLIQNSLESAPR-----------KQLPTHL 161 Query: 181 RIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 +P K + +I + LVVE+YSR Sbjct: 162 ILPFQYKGLVKQIIDSKWVGLEINELLVVEYYSR 195 >gi|116010535|emb|CAL38871.1| ribosomal protein S4 [Shepherdia sp. IND] Length = 194 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L K+K++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQSRPIKKSQYRIRLEEKEKLRFHYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+ VNGR V+I SYRCK D+I VK++ K A Sbjct: 81 EMRLDNILFRLGMASTIPQARQLVNHRHIFVNGRIVDIPSYRCKPRDIITVKEEQKSRAL 140 Query: 153 VLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V A R ++P++++++ +I S K V + LVVE+YSR Sbjct: 141 VQNYLDSASREELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 192 >gi|6002019|emb|CAA58915.1| ribosomal protein S4 [Aechmea dealbata] Length = 196 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYEHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K Q SK L AS A +++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITAKDNQGSKGLIQNYIASS-AHKELPKHLTID 167 >gi|326909395|ref|YP_004327664.1| ribosomal protein S4 [Hevea brasiliensis] gi|308523509|gb|ADO33559.1| ribosomal protein S4 [Hevea brasiliensis] Length = 201 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KVGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + + K A + L++S + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARAEQKSRAMIKNYLDSS--PQEELPKHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|305672361|gb|ADM63604.1| ribosomal protein S4 [Pentaphragma sp. Duangjai 49] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRLAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + QKS+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIMARDGQKSRAL 138 Query: 151 AS-VLEASQLAERDVPEYISVN 171 L++S + ++P +++++ Sbjct: 139 IQKSLDSS--PDEELPNHLTLH 158 >gi|305672223|gb|ADM63535.1| ribosomal protein S4 [Paracryphia alticola] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q S+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRTL 138 Query: 151 -ASVLEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|289599935|gb|ADD12918.1| ribosomal protein S4 [Hibbertia scandens] Length = 189 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 13/197 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G TRS L Q R K S + ++L KQK++ +YG ++E++ Sbjct: 1 RRLG-SLPGLTSKRPKTRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLK 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I S Sbjct: 56 YVRIAGKAKGATGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 YRCK D+I VK + K A + L++S + ++P+Y++++ +I S K V Sbjct: 116 YRCKPRDIITVKDEHKSRALIQNYLDSS--SHEELPKYLTLHPFQYKGLVNQIIDS-KWV 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 173 GLKI--NELLVVEYYSR 187 >gi|67035620|gb|AAY62741.1| small ribosomal protein subunit 4 [Dicranoloma eucamptodontoides] Length = 194 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K A +++ + +++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKNRQKSQAMIIKNLEFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|26399200|sp|Q9SMG1|RR4_FUNHY RecName: Full=30S ribosomal protein S4, chloroplastic gi|6015522|emb|CAB57798.1| small ribosomal protein 4 [Funaria hygrometrica] Length = 201 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S P Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGV-LPGLTNKTPQLKSSSPN---QSAAKKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVN V+I SYRCK D I VK + K A + + +++ VP +++ + Sbjct: 116 VLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKAKVPNHLTFDSTQKKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 NQI---LDRESIGLKINELLVVEYYSR 199 >gi|322719481|gb|ADX07677.1| small ribosomal protein subunit 4 [Racomitrium barbuloides] gi|322719483|gb|ADX07678.1| small ribosomal protein subunit 4 [Racomitrium barbuloides] gi|322719485|gb|ADX07679.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] gi|322719487|gb|ADX07680.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] gi|322719489|gb|ADX07681.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 198 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLAFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|14090482|gb|AAK53526.1| small ribosomal protein 4 [Campylopus umbellatus] Length = 182 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 80 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIAKNLEFSQ-- 137 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 138 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 180 >gi|305672363|gb|ADM63605.1| ribosomal protein S4 [Nymphoides peltata] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 3/120 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + QKS+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITARDEQKSRSL 138 >gi|67035556|gb|AAY62709.1| small ribosomal protein subunit 4 [Aloinella cucullifera] Length = 195 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSRAMIIKNVEFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 153 KVPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|322719505|gb|ADX07689.1| small ribosomal protein subunit 4 [Niphotrichum elongatum] Length = 198 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|305672221|gb|ADM63534.1| ribosomal protein S4 [Polyosma sp. McPherson 18643] gi|305672261|gb|ADM63554.1| ribosomal protein S4 [Sphenostemon lobosporus] gi|305672267|gb|ADM63557.1| ribosomal protein S4 [Quintinia quatrefagesii] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 139 IQNSLDSS--PHEELPKHLTLH 158 >gi|159161162|ref|YP_001542449.1| ribosomal protein S4 [Ceratophyllum demersum] gi|172048121|sp|A8SEA5|RR4_CERDE RecName: Full=30S ribosomal protein S4, chloroplastic gi|148508445|gb|ABQ81452.1| ribosomal protein S4 [Ceratophyllum demersum] gi|227481121|emb|CAP62500.1| ribosomal protein S4 [Ceratophyllum demersum] Length = 201 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P S G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----SPGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + ++ + +VP+++++ A Sbjct: 116 ILVNGRIVDIPSYRCKPQDIITTRDEQRSRALIQKSIDSSPHEEVPKHLTLYPFQYKALV 175 Query: 180 VRIPSS----LKDVPYPVIMQPNLVVEFYSR 206 +I S LK + LVVE+YSR Sbjct: 176 NKIIDSQWIGLK-------INELLVVEYYSR 199 >gi|17154481|emb|CAC83932.1| ribosomal protein S4 [Doryanthes excelsa] gi|17154717|emb|CAC83928.1| ribosomal protein S4 [Tecophilaea cyanocrocus] Length = 174 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P++++++ Sbjct: 133 IQNYIASSPPE-ELPKHLTID 152 >gi|67035670|gb|AAY62766.1| small ribosomal protein subunit 4 [Campylopus introflexus] Length = 194 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 92 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQ-- 149 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 150 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 192 >gi|305672271|gb|ADM63559.1| ribosomal protein S4 [Gomphandra javanica] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRHVLVN R V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHVLVNSRIVDIPSYRCKPQDIITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + LE+S + P++++++ Sbjct: 139 IQNSLESS--PHEESPKHLTLH 158 >gi|139389266|ref|YP_001123032.1| ribosomal protein S4 [Aethionema grandiflorum] gi|152060543|sp|A4QJK1|RR4_AETGR RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286228|dbj|BAF49856.1| ribosomal protein S4 [Aethionema grandiflorum] Length = 201 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN---HDN 174 +LVNGR V+I SYRCK D+I VK Q S+ L ++L++S A ++P++++++ ++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSS--APEELPKHLTLHTFQYEG 173 Query: 175 MVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V + R LK + LVVE+YSR Sbjct: 174 LVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|24473810|gb|AAL82748.1| small ribosomal subunit protein 4 [Acidodontium subrotundum] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDQQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ I L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLINQILDRESIGLKINELLVVEYYSR 197 >gi|67035688|gb|AAY62775.1| small ribosomal protein subunit 4 [Pilopogon gracilis] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 97 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPEDFITIKNRQKSQSMIARNLEFSQ-- 154 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 155 KYKVPTHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 197 >gi|62287267|sp|Q6H9L2|RR4_EQUGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927199|emb|CAE47535.1| small ribosomal protein 4 [Equisetum giganteum] Length = 207 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 114/210 (54%), Gaps = 9/210 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+ +NL G V ++ Q + K S +G++L AKQ+++ Sbjct: 1 MSRYRGPRLRIIRRL-QNLPGLTNKLVESKKNKVSGSDQSIQKKVSQYGIRLEAKQRLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + + A ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH Sbjct: 60 NYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEY--ISVNHDNMV 176 +LVN R V++ S+ CK D+I + K S+L A+ +PE+ +S++ Sbjct: 119 ILVNNRIVDVPSFHCKPKDIITIG-APKTYQSILSKRIESFAKDQIPEHLTLSLSEPKKP 177 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV + + + + LVVE+YSR Sbjct: 178 KGFVNYLINRESIGLKI--NELLVVEYYSR 205 >gi|184128027|gb|ACC67913.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 176 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD Sbjct: 7 QSASKKISQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 65 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ Sbjct: 66 ILFRLGMSPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLE 125 Query: 158 QLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + +PE+++ + DN FV + + + LVVE+YSR Sbjct: 126 SLNKDQIPEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 174 >gi|160415808|gb|ABX39211.1| small ribosomal protein 4 [Niphotrichum elongatum] Length = 188 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|11228658|gb|AAG33114.1| small ribosomal protein 4 [Oncophorus wahlenbergii] Length = 191 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|305672297|gb|ADM63572.1| ribosomal protein S4 [Barnadesia arborea] Length = 173 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTL 157 >gi|160415804|gb|ABX39209.1| small ribosomal protein 4 [Bucklandiella crispipila] Length = 188 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 186 >gi|21914158|gb|AAM81301.1| ribosomal protein subunit 4 [Rosulabryum capillare] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 152 KTPNHLTYNFLKKKGLVTQI---LDRESIGLKINELLVVEYYSR 192 >gi|67035668|gb|AAY62765.1| small ribosomal protein subunit 4 [Campylopus filifolius] Length = 186 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 84 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQ-- 141 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 142 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 184 >gi|67035680|gb|AAY62771.1| small ribosomal protein subunit 4 [Schistomitrium brevi-apiculatum] Length = 192 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +A +E SQ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKTIEFSQ-- 147 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E VP +++++ +I L + + LVVE+YSR Sbjct: 148 EYKVPNHLTLDSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 190 >gi|313199704|ref|YP_004021318.1| ribosomal protein S4 [Theobroma cacao] gi|309321268|gb|ADO64811.1| ribosomal protein S4 [Theobroma cacao] gi|328924785|gb|ADO64892.2| ribosomal protein S4 [Theobroma cacao] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 117/211 (55%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRT----GSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR+V+I SYRCK D+I + QKS+ L + L++S ++P++++++ Sbjct: 116 ILVNGRTVDIPSYRCKPRDIISARDEQKSRTLIQNYLDSS--THEELPKHLTLH----TL 169 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 170 QYKGLVNQIIDRKW-VGLKINELLVVEYYSR 199 >gi|157689516|gb|ABV65314.1| ribosomal protein S4 [Lythrum flagellare] Length = 195 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSK-Q 149 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKSK Sbjct: 82 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDDQKSKAM 141 Query: 150 LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + L++S +VP +++++ +I S K V + LVVE+YSR Sbjct: 142 IQNYLDSS--PHEEVPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 193 >gi|21914144|gb|AAM81294.1| ribosomal protein subunit 4 [Acidodontium seminerve] Length = 196 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ FLE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGEILLQFLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 154 KTPNHLTYNFSKKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|157689518|gb|ABV65315.1| ribosomal protein S4 [Manihot esculenta] Length = 193 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-VTERQLLKYVRIAAKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 80 EMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAM 139 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P++++++ +I S K V + LVVE+YSR Sbjct: 140 IQNDLDSS--PQEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 191 >gi|32401818|gb|AAP80897.1| small ribosomal protein 4 [Pterocarya stenoptera] Length = 174 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R SK S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 2 GSDLRNQSRFSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 60 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 61 EMRLDNILFRLGMTSTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQKSRAL 120 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 121 IQNYLDSS--PREELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 172 >gi|28194835|gb|AAO33679.1|AF481034_1 ribosomal protein S4 [Barbula indica] gi|28194837|gb|AAO33680.1|AF481035_1 ribosomal protein S4 [Barbula ehrenbergii] gi|28194839|gb|AAO33681.1|AF481036_1 ribosomal protein S4 [Barbula ehrenbergii] Length = 196 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K V + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPEDFITIKDRKKSQVMVTKNLNFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|67035618|gb|AAY62740.1| small ribosomal protein subunit 4 [Braunfelsia dicranoides] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KVSQYRIRLEEKQKLRFHYG-ITERQLLNHVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNDRVVNIPSYRCKPRDFITIKDRQKSQAIIIKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|77019143|emb|CAH60177.1| chloroplast 30S ribosomal protein S4 [Codriophorus aciculare] Length = 195 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 93 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 193 >gi|67035672|gb|AAY62767.1| small ribosomal protein subunit 4 [Brothera leana] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K V + +L+++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIELSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 192 >gi|77019183|emb|CAH60197.1| chloroplast 30S ribosomal protein S4 [Grimmia longirostris] Length = 177 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++++ Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFQL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 75 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQESQAMIIKNMDFSQKY 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 135 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 175 >gi|91983994|ref|YP_567078.1| ribosomal protein S4 [Vitis vinifera] gi|122242803|sp|Q0ZJ18|RR4_VITVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|91701652|gb|ABE47536.1| ribosomal protein S4 [Vitis vinifera] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 29/217 (13%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLNYVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I +QKS+ L +V ++S + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAGNEQKSRALIQNVFDSS--SHEELPKHLTLH------ 167 Query: 178 TFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 P K + +I + LVVE+YSR Sbjct: 168 -----PFQFKGLVNQIIDSNWVGLKINELLVVEYYSR 199 >gi|85001765|gb|ABC68420.1| small ribosomal protein 4 [Ephemerum sessile] Length = 195 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKTKGSTGLILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|222103476|gb|ACM44267.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 202 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 100 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLAFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 200 >gi|157689482|gb|ABV65297.1| ribosomal protein S4 [Gunnera manicata] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 114/211 (54%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSVKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + + K A + L++S AE +P++++ H Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEEKSRALIQNFLDSSTHAE--LPKHLT-RHPFQYK 172 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 V + + D + V ++ N LVVE+YSR Sbjct: 173 GLV---NQIIDSKW-VSLKINELLVVEYYSR 199 >gi|22854681|gb|AAN09760.1| small ribosomal protein 4 [Brothera leana] Length = 185 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K V + +L+++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIELSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 183 >gi|67035700|gb|AAY62781.1| small ribosomal protein subunit 4 [Pseudobraunia californica] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + K + +++ +++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNNRIINIPSYRCKPQDFITIKDRQKSQSIIIKNMDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 197 >gi|310707247|gb|ADP08973.1| Rps4 [Lindsaea virescens] Length = 188 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 10/167 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++LRAKQ+++ YG ++E++ + A +++G T L+ LE RLD I+++ Sbjct: 26 KISQFCVRLRAKQRLRFNYG-LTERELLKYVRIARKTKGSTGQVLLQLLEMRLDNILFQL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV--LEASQLAE 161 TI AARQ VNHRH+LVN R V++ SYRCK D+I ++ QL S + + E Sbjct: 85 GLASTIPAARQLVNHRHILVNHRIVDVPSYRCKPKDIITIRH---QLISYNKMGSKLFGE 141 Query: 162 RDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D+P + +S++ +N FV ++ + V + LVVE+YSR Sbjct: 142 GDIPHHLTVSLSENNRPVGFVNSIANRECVDLNI--NELLVVEYYSR 186 >gi|222103478|gb|ACM44268.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 202 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 100 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLAFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 200 >gi|160415778|gb|ABX39196.1| small ribosomal protein 4 [Glyphomitrium humillimum] Length = 188 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKA 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP ++ N +I L + + LVVE+YSR Sbjct: 146 EVPNHLIFNSLEKNGLVNQI---LDQESIGLKINELLVVEYYSR 186 >gi|122893992|ref|YP_001004188.1| ribosomal protein S4 [Ranunculus macranthus] gi|69216108|gb|AAZ03892.1| ribosomal protein S4 [Ranunculus macranthus] gi|85540806|gb|ABC70758.1| ribosomal protein S4 [Ranunculus macranthus] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 29 GSDLRNQSRPGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRAL 147 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E ++P++++++ + +I S K V + LVVE+YSR Sbjct: 148 IQNFMDSSPHE-ELPKHLTLHPSQYKGSVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|11228633|gb|AAG33102.1| small ribosomal protein 4 [Dicranum condensatum] Length = 191 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|67035684|gb|AAY62773.1| small ribosomal protein subunit 4 [Holomitriopsis laevifolia] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGVVNQI---LNHESIGLKINELLVVEYYSR 192 >gi|305672235|gb|ADM63541.1| ribosomal protein S4 [Villarsia sp. Fay s.n.] Length = 173 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNPSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + QKS+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITARDEQKSRAL 138 Query: 151 ASVLEASQLAERDVPEYISVN 171 S L E ++P +++++ Sbjct: 139 IQNSIDSSLPE-ELPNHLTLH 158 >gi|209969115|emb|CAR92805.1| ribosomal protein S4 [Iris vorobievii] Length = 187 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 15 GSDLKNHLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 133 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 134 IQNFMASSPHE-ELPNHLTIDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 185 >gi|42794652|gb|AAS45723.1| Rps4 [Disterigma pernettyoides] Length = 211 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA--SVLEASQL 159 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L S L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 160 AERD-----VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKGNRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|33413167|emb|CAD86720.1| ribosomal protein small subunit 4 [Racomitrium lanuginosum] Length = 179 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 18 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 77 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 136 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 137 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 177 >gi|170516219|gb|ACB15111.1| small ribosomal protein 4 [Lepidozamia peroffskyana] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKSKP-----------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS+ S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 12 PGLTNKRPKSRNDPTNQSSSRRISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 70 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 71 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 130 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + K A + + L+++D +P +++++ +I S K + + LVV Sbjct: 131 VRDQQKLRAMIEKNIDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWIGLKI--NELLVV 187 Query: 202 EFYSR 206 E+YSR Sbjct: 188 EYYSR 192 >gi|22854745|gb|AAN09792.1| small ribosomal protein 4 [Braunfelsia dicranoides] Length = 191 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNHVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMTPTIPGARQLVNHRHILVNDRVVNIPSYRCKPRDFITIKDRQKSQAIIIKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|11228639|gb|AAG33105.1| small ribosomal protein 4 [Ditrichum flexicaule] gi|33413211|emb|CAD86740.1| ribosomal protein small subunit 4 [Ditrichum flexicaule] gi|77019137|emb|CAH60175.1| chloroplast 30S ribosomal protein S4 [Ditrichum flexicaule] Length = 181 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K A +++ +++ Sbjct: 79 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITINDRQKSQAVIIKNIGFSQKY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 139 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 179 >gi|313112851|ref|ZP_07798497.1| ribosomal protein S4 [Faecalibacterium cf. prausnitzii KLE1255] gi|310624756|gb|EFQ08065.1| ribosomal protein S4 [Faecalibacterium cf. prausnitzii KLE1255] Length = 200 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 7/172 (4%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 +G RK K S + QL+ KQK+K YG + EK+F + + A+ G T NL+ +E RL Sbjct: 34 NGNMRK-KQSEYASQLKEKQKVKFIYG-VLEKQFHNAYLRAEARPGKTGENLLQIMECRL 91 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA--SVL 154 D +V+R F T ARQ V+H H VNG+ VNI SY+ K GDVIEV++ S+ A + L Sbjct: 92 DNVVFRLGFAQTRRDARQLVSHAHFTVNGKKVNIPSYQVKAGDVIEVRESSRSSAKFAKL 151 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ ++ ++P D+ Y V +L+VE YS+ Sbjct: 152 TGPEAPVVALPAWLNRETGSLKGVVAKLPER-SDIDYEV--AEHLIVELYSK 200 >gi|262192918|gb|ACY30476.1| small ribosomal subunit protein 4 [Rosulabryum capillare] Length = 188 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIINKNLNLYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 146 KTPNHLTYNFLKKKGLVTQI---LDRESIGLKINELLVVEYYSR 186 >gi|125662732|gb|ABN50316.1| small ribosomal protein 4 [Illicium verum] Length = 203 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 107/179 (59%), Gaps = 11/179 (6%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH LVNGR V+I SYRCK D+I + + + A Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHTLVNGRLVDIPSYRCKPRDIITTRDEHRSRAL 147 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +++SQ + ++P++++++ ++ + + + + D + V ++ N LVVE+YSR Sbjct: 148 IQNSIDSSQ--KEELPKHLTLH--SLQYQYKGLVNQIIDSKW-VGLKINELLVVEYYSR 201 >gi|118577615|gb|ABL07173.1| small ribosomal protein 4 [Piper pendulispicum] Length = 185 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 18/189 (9%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 61 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 120 Query: 142 EVK--QKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQP 197 + Q+SK L S+ AS ++P++++++ +I S K V + Sbjct: 121 TTRNEQRSKVLVQNSMDSASH---EELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NE 174 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 175 LLVVEYYSR 183 >gi|157689506|gb|ABV65309.1| ribosomal protein S4 [Juglans nigra] Length = 180 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 107/188 (56%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G + Q R SK S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 4 RPKA-------GSDVRNQSRSSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 55 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 56 GSTGQVLLQLLEMRLDNILFRLGMTSTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDII 115 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 + QKS+ L + L++S ++P++++++ +I S K V + Sbjct: 116 TARDEQKSRALIQNYLDSS--PREELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 170 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 171 LVVEYYSR 178 >gi|157689422|gb|ABV65267.1| ribosomal protein S4 [Berberidopsis corallina] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKSK L Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSKAL 147 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P +++++ +I S K V + LVVE+YSR Sbjct: 148 IQNYLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|157689474|gb|ABV65293.1| ribosomal protein S4 [Euonymus americanus] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQILLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R T+ ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 88 EMRLDNILFRLGMASTVPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 147 Query: 153 VLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +VP++++++ +I S K + + L+VE+YSR Sbjct: 148 IQNYLDSFPHEEVPKHLTLHPIQYKGLVNQIIDS-KSIGLKI--NELLIVEYYSR 199 >gi|24473844|gb|AAL82766.1| small ribosomal subunit protein 4 [Plagiobryum zierii] Length = 197 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAVISKNLNLYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ N +I L + + LVVE+YSR Sbjct: 155 ETPNHLTYNFLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|67035654|gb|AAY62758.1| small ribosomal protein subunit 4 [Jonesiobryum cerradense] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKDRQKSQTMIIKNLDFSQKT 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNFSZKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|67035606|gb|AAY62734.1| small ribosomal protein subunit 4 [Garckea phascoides] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + + +++ Sbjct: 97 GXAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQXMITKNAXFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLXFNFLEKKGLVNQI---LDQESIXLKINELLVVEYYSR 197 >gi|290487066|gb|ADD29917.1| ribosomal protein S4 [Ehretia acuminata] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMALTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRTL 147 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S +P +++++ +I S K V + LVVE+YSR Sbjct: 148 IQNSLDSS--PHEGLPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|116010527|emb|CAL37370.1| ribosomal protein S4 [Trithrinax brasiliensis] gi|116010529|emb|CAL38868.1| ribosomal protein S4 [Phoenix reclinata] Length = 182 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 11/152 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPKS G L Q R K S + ++L KQK++ +YG ++E++ A +++ Sbjct: 18 RPKS-------GSDLKTQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLVRYVHIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVN 171 KQ+SK L AS E ++P++++++ Sbjct: 130 TTKDKQRSKALIQNYIASPPPE-ELPKHLTID 160 >gi|63078628|gb|AAY29400.1| ribosomal protein S4 [Tortella humilis] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|49574596|ref|NP_848062.2| ribosomal protein S4 [Adiantum capillus-veneris] gi|60393878|sp|Q85FL8|RR4_ADICA RecName: Full=30S ribosomal protein S4, chloroplastic gi|48476001|gb|AAP29394.2| ribosomal protein S4 [Adiantum capillus-veneris] Length = 197 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 14/169 (8%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD I+++ Sbjct: 35 KISQFCVRLEAKQRLRLNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDNIIFQL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V HRH+LVN R V+I SYRCK D+I ++ + A+ L++ L+ + Sbjct: 94 GMASTIPAARQLVCHRHILVNHRVVDIPSYRCKPRDIISIRNRPTS-ANALKSESLSGNE 152 Query: 164 VPEYISVNHD------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++++ +V V S D+ LVVE+YSR Sbjct: 153 VPDHLTLSISKTGEPTGLVNHLVNRESVNLDI------NELLVVEYYSR 195 >gi|77019175|emb|CAH60193.1| chloroplast 30S ribosomal protein S4 [Grimmia incurva] Length = 195 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 93 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 193 >gi|322719509|gb|ADX07691.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 198 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNISFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|305672305|gb|ADM63576.1| ribosomal protein S4 [Phelline comosa] Length = 173 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDTITTRDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P Y++++ Sbjct: 139 IQNSLDSS--PHEELPNYLTLH 158 >gi|32401830|gb|AAP80903.1| small ribosomal protein 4 [Welwitschia mirabilis] Length = 190 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 10/173 (5%) Query: 39 QRRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 +RR S+P + Q L+ KQK++ +YG ++E++ R A R++G T L+ LE Sbjct: 22 RRRFSRPWWKKSQHLICLQEKQKIRFHYG-LTERQLRQYINIAKRAQGSTGQVLLQLLEM 80 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASV 153 RLD I+++ TI AARQ VNHRHVLVNGR V+I SYRCK DV+ +K K+ ++L ++ Sbjct: 81 RLDNIIFQLGIARTIPAARQIVNHRHVLVNGRVVDIPSYRCKPQDVLTIKTKNPEELRTI 140 Query: 154 LEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + ++ R VP +++++ +I KD+ + Q LV+E+Y Sbjct: 141 INKNRSKFRRKVPYHLTLDLAQNKGIVNKIIDR-KDIQLKI--QEMLVIEYYC 190 >gi|6002083|emb|CAA58951.1| ribosomal protein S4 [Smilax aspera] Length = 196 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKS-------GSDLKNQLRSRKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K Q+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGRVVDIPSYRCKPQDIITPKDEQRSKALIQNSIASSPRE-ELPKHLTID 167 >gi|22854739|gb|AAN09789.1| small ribosomal protein 4 [Symblepharis vaginata] Length = 185 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + A +++ +++ Sbjct: 83 GLAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKNRQXSQAMIIKNVDFSQKX 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|32480845|ref|NP_862756.1| ribosomal protein S4 [Calycanthus floridus var. glaucus] gi|52783277|sp|Q7YJX0|RR4_CALFG RecName: Full=30S ribosomal protein S4, chloroplastic gi|32399381|emb|CAD28723.1| ribosomal protein S4'' [Calycanthus floridus var. glaucus] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 37/221 (16%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYI-SVNHD 173 NHRH+LVNGR V+I SYRCK D+I + Q+S+ L + Y+ S +H+ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTRDEQRSRAL-------------IQNYLDSPSHE 158 Query: 174 NMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 + PS K + +I + LVVE+YSR Sbjct: 159 ELPKHLTFHPSQYKGLVNQIIDSKWVGLKINELLVVEYYSR 199 >gi|293612008|gb|ADE48448.1| ribosomal protein 4 [Lepidozamia peroffskyana] Length = 183 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKSKP-----------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS+ S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSRNDPTNQSSSRRISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + K A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 VRDQQKLRAMIEKNIDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWIGLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|125662686|gb|ABN50293.1| small ribosomal protein 4 [Thujopsis dolabrata] Length = 203 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 38 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + + ++D Sbjct: 97 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLINIINKNRDIFKKD 156 Query: 164 ---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ +N + + V K + + LVVE+YSR Sbjct: 157 NMRVPPHLNWINKKSQYSALVNKIIDNKRIGLKI--NELLVVEYYSR 201 >gi|118577611|gb|ABL07171.1| small ribosomal protein 4 [Piper ornatum] Length = 184 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S + RS Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 RPRSESSLRS-------QPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 60 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDII 119 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + V + A R ++P++++++ +I S K V + LV Sbjct: 120 TTINEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|67035614|gb|AAY62738.1| small ribosomal protein subunit 4 [Bryowijkia ambigua] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVSIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|184127995|gb|ACC67897.1| ribosomal protein small subunit 4 [Marattia salicifolia] Length = 159 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 6/160 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R PTI Sbjct: 1 IRLEAKQRLRFNYG-LTERQLLKHVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMSPTI 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERDVPEYI 168 AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + +PE++ Sbjct: 60 PAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKDQIPEHL 119 Query: 169 SVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ DN FV + + + LVVE+YSR Sbjct: 120 TLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 157 >gi|33413185|emb|CAD86729.1| ribosomal protein small subunit 4 [Campylopus introflexus] Length = 182 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRHVLVN VNI SYRCK D I +K + K +A LE SQ Sbjct: 80 GMAPTIPGARQLVNHRHVLVNNYIVNIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQ-- 137 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 138 KYKVPNHLTFNSLEKKGLVNQI---LNHESIGLNINELLVVEYYSR 180 >gi|67035626|gb|AAY62744.1| small ribosomal protein subunit 4 [Paraleucobryum enerve] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|305672293|gb|ADM63570.1| ribosomal protein S4 [Grisollea myrianthea] Length = 173 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRHVLVN R V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHVLVNSRIVDIPSYRCKPRDIITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + LE+S + P++++++ Sbjct: 139 IQNSLESS--PHEESPKHLTLH 158 >gi|187763094|ref|YP_001876569.1| ribosomal protein S4 [Welwitschia mirabilis] gi|254809472|sp|B2Y1V2|RR4_WELMI RecName: Full=30S ribosomal protein S4, chloroplastic gi|163311624|gb|ABY26782.1| ribosomal protein S4 [Welwitschia mirabilis] gi|220983467|dbj|BAH11236.1| ribosomal protein S4 [Welwitschia mirabilis] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 10/173 (5%) Query: 39 QRRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 +RR S+P + Q L+ KQK++ +YG ++E++ R A R++G T L+ LE Sbjct: 33 RRRFSRPWWKKSQHLICLQEKQKIRFHYG-LTERQLRQYINIAKRAQGSTGQVLLQLLEM 91 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASV 153 RLD I+++ TI AARQ VNHRHVLVNGR V+I SYRCK DV+ +K K+ ++L ++ Sbjct: 92 RLDNIIFQLGIARTIPAARQIVNHRHVLVNGRVVDIPSYRCKPQDVLTIKTKNPEELRTI 151 Query: 154 LEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + ++ R VP +++++ +I KD+ + Q LV+E+Y Sbjct: 152 INKNRSKFRRKVPYHLTLDLAQNKGIVNKIIDR-KDIQLKI--QEMLVIEYYC 201 >gi|37548875|gb|AAO32706.1| ribosomal protein 4 [Polytrichastrum alpinum] Length = 193 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 91 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIITKNIDFSQKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTFNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 191 >gi|229577756|ref|YP_002836092.1| ribosomal protein S4 [Megaleranthis saniculifolia] gi|226933884|gb|ACO92017.1| ribosomal protein S4 [Megaleranthis saniculifolia] Length = 201 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q+S+ L Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQRSRAL 147 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ + +I S K V + LVVE+YSR Sbjct: 148 IQNYLDSS--PHEELPKHLTLHSSQYKGSVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|222103516|gb|ACM44287.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 203 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 101 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 160 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 161 KIPNHLAFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 201 >gi|121761750|gb|ABM64962.1| ribosomal protein S4 [Rhizomnium appalachianum] Length = 195 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + L+++ Sbjct: 93 GMASTIPGARQLVNHRHILVNNRLVDIPSYRCKPQDFITIKDRQKSQTIIGKTLDLSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGFVTQI---LDRESIELKINELLVVEYYSR 193 >gi|116010495|emb|CAL37354.1| ribosomal protein S4 [Verbena officinalis] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 24/192 (12%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ + R+ Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKAGSDPRN-------QPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQLASVLEASQLAERDVPEYIS---VNHDNMVATFVRIPSSLKDVPYPVIMQ 196 K QKS+ L S E +VP +++ + + +V + D + V ++ Sbjct: 130 TAKDEQKSRTLIQNSLNSSPPE-EVPNHLTLHPIQYKGLVNQII-------DSQW-VGLK 180 Query: 197 PN--LVVEFYSR 206 N LVVE+YSR Sbjct: 181 INELLVVEYYSR 192 >gi|67035630|gb|AAY62746.1| small ribosomal protein subunit 4 [Orthodicranum flagellare] Length = 200 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 80/127 (62%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 157 Query: 163 DVPEYIS 169 +P +++ Sbjct: 158 KIPNHLT 164 >gi|67035706|gb|AAY62784.1| small ribosomal protein subunit 4 [Bucklandiella crispipila] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 197 >gi|307602403|gb|ADN68083.1| ribosomal protein S4 [Thujopsis dolabrata] Length = 189 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + + ++D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLINIINKNRDIFKKD 142 Query: 164 ---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ +N + + V K + + LVVE+YSR Sbjct: 143 NMRVPPHLNWINKKSQYSALVNKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|305672277|gb|ADM63562.1| ribosomal protein S4 [Corokia macrocarpa] Length = 173 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITSRNEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISV 170 + L++S ++P ++++ Sbjct: 139 IQNYLDSS--PHEELPNHLTL 157 >gi|305672229|gb|ADM63538.1| ribosomal protein S4 [Moschopsis rosulata] Length = 173 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQLRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTIAARDEQKSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|121761857|gb|ABM65014.1| ribosomal protein S4 [Plagiomnium cf. cuspidatum Wyatt 1774] gi|121761865|gb|ABM65018.1| ribosomal protein S4 [Plagiomnium cf. cuspidatum Wyatt 1832] Length = 199 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D+I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 197 >gi|20531126|gb|AAM27383.1| ribosomal protein 4 [Rhizomnium punctatum] Length = 193 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + L+++ Sbjct: 91 GMASTIPGARQLVNHRHILVNNRLVDIPSYRCKPQDFITIKDRQKSQTIIGKTLDLSQKS 150 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTYNSLNKKGFVTQI---LDRESIELKINELLVVEYYSR 191 >gi|63191809|gb|AAY34864.1| small ribosomal protein subunit 4 [Crumia latifolia] Length = 190 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 88 NMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLINQI---LDQESVGLKINELLVVEYYSR 188 >gi|73476074|emb|CAE45346.1| ribosomal protein S4 [Dierama robustum] Length = 182 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 21 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I KQ+SK L Sbjct: 80 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITTKNKQRSKAL 139 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS ++P +++V+ Sbjct: 140 IQNFIASSPHREELPNHLTVD 160 >gi|3914840|sp|O19992|RR4_BOBGL RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292744|emb|CAA92565.1| ribosomal protein S4 [Bobartia gladiata] Length = 194 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ V HRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVTHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQDYTASSPHE-ELPNHLTIDPIQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 192 >gi|305672289|gb|ADM63568.1| ribosomal protein S4 [Arctopus dregei] Length = 173 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITSRDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSFDSSSHDELPKHLTLH 158 >gi|89112933|gb|ABD61085.1| ribosomal protein subunit 4 [Codriophorus carinatus] Length = 172 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|46811002|gb|AAT01819.1| small ribosomal protein 4 [Fossombronia angulosa] Length = 197 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 36 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 95 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLLQK- 153 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 154 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 195 >gi|17154617|emb|CAC83921.1| ribosomal protein S4 [Orthrosanthus chimboracensis] Length = 182 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IENSIASSPHE-ELPNHLTID 160 >gi|14090500|gb|AAK53535.1| small ribosomal protein 4 [Brothera leana] Length = 183 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K V + +L+++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIELSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 141 KVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 181 >gi|89112929|gb|ABD61083.1| ribosomal protein subunit 4 [Bucklandiella heterosticha] Length = 172 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 170 >gi|63078575|gb|AAY29374.1| ribosomal protein S4 [Hyophila involuta] Length = 197 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 IIPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|63191799|gb|AAY34859.1| small ribosomal protein subunit 4 [Hilpertia velenovskyi] Length = 191 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRKKSQVMITKNLDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|319777073|ref|YP_004136724.1| 30S ribosomal protein s4 [Mycoplasma fermentans M64] gi|318038148|gb|ADV34347.1| 30S ribosomal protein S4 [Mycoplasma fermentans M64] Length = 198 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 11/199 (5%) Query: 10 KIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K RR G ++ G+ S R+Y PG HG +R K S +GL L KQK+K YG ++E Sbjct: 9 KKSRRYGFSILETGKEFSKGRKRTYAPGQHGDKR-VKLSDYGLHLYEKQKVKYLYG-LNE 66 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 K+ + A + +G T L+ LESRLD +VYRA F T ARQ V+H H +NG Sbjct: 67 KQMHKYYIRATKIKGVTGTVLLQLLESRLDNLVYRAGFASTRRQARQLVSHGHFTLNGHK 126 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I S + G I++K+KS Q ++EA+ L +R +++++ ++ R+P + Sbjct: 127 ADIPSMNVEVGSKIQLKEKS-QKNKIIEAN-LKDRSAAKWLTIK--GFEVSYDRLPD--R 180 Query: 188 DVPYPVIMQPNLVVEFYSR 206 +P I + N +VE YS+ Sbjct: 181 SELHPEI-KENFIVELYSK 198 >gi|254995551|emb|CAO82733.1| ribosomal protein S4 [Lycopodium sabinifolium] Length = 172 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 99/168 (58%), Gaps = 17/168 (10%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 13 SQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGM 71 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ A + + ++ ++ + Sbjct: 72 APTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITARDRSESQAIIAKNNEFSQTYKI 131 Query: 165 PEYI---SVNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ S+ + +V + I S++ ++ LVVE+YSR Sbjct: 132 PNHLTLHSLQNKGLVNKIIDRESIDSNINEL---------LVVEYYSR 170 >gi|28194695|gb|AAO33609.1|AF480964_1 ribosomal protein S4 [Leptobarbula berica] Length = 196 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFISIKDRQKSQVMITKNIDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LNQESIGLKINELLVVEYYSR 194 >gi|157689538|gb|ABV65325.1| ribosomal protein S4 [Phyllanthus calycinus] Length = 195 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSDLRNQSRFGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNH+H+LVNGR V+I SYRCK D+I K + K A Sbjct: 82 EMRLDNILFRLGMASTIPRARQLVNHKHILVNGRIVDIPSYRCKPRDIITAKNEQKSRAM 141 Query: 153 V---LEASQLAERDVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + L++S ++++P ++ S+++ +V + D + V ++ N LVVE+Y Sbjct: 142 IQNYLDSS--PQQELPNHLTLHSIHYKGLVNQII-------DSKW-VGLKINELLVVEYY 191 Query: 205 SR 206 SR Sbjct: 192 SR 193 >gi|32401799|gb|AAP80888.1| small ribosomal protein 4 [Calycanthus chinensis] Length = 184 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q+S+ L Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQRSRAL 130 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + Y+ S +H+ + PS K + +I + LVV Sbjct: 131 -------------IQNYLDSPSHEELPKHLTFQPSQYKGLVNQIIDSKWVGLKINELLVV 177 Query: 202 EFYSR 206 E+YSR Sbjct: 178 EYYSR 182 >gi|12330522|gb|AAG52798.1| ribosomal protein 4 [Weissia ludoviciana] Length = 189 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|67035728|gb|AAY62795.1| small ribosomal protein subunit 4 [Funariella curviseta] Length = 196 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 30 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 88 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 89 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPDDSITVKNRQKSQAIITKNID 148 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ N +I L + + LVVE+YSR Sbjct: 149 FSQKSKVPNHLTFNSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|89112931|gb|ABD61084.1| ribosomal protein subunit 4 [Codriophorus aciculare] Length = 172 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 70 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPHDFITIKDRQKSQAMIIKNMDFSQKY 129 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N + I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNS---LENKGLINQILDHESIGLKINELLVVEYYSR 170 >gi|3914864|sp|O20291|RR4_TRISA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293101|emb|CAA92562.1| ribosomal protein S4 [Trimezia stayermarkii] Length = 194 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 15/180 (8%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGRVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITTKDKERSKVL 140 Query: 151 ASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ + +V + R LK + LVVE+YSR Sbjct: 141 IQNYIASSSHE-ELPNHLTIDPLQYKGLVNQIIDRKWVGLK-------INELLVVEYYSR 192 >gi|121761873|gb|ABM65022.1| ribosomal protein S4 [Plagiomnium acutum] Length = 195 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKNRQKSQTMISKNIDFCQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|28194663|gb|AAO33593.1|AF480948_1 ribosomal protein S4 [Hyophila involuta] Length = 195 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|146261565|gb|ABQ15092.1| ribosomal protein S4 [Hamamelis japonica] Length = 194 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYIRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 81 EMRLDNILFRLGMTSTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 140 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 141 IQNYLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 192 >gi|14090494|gb|AAK53532.1| small ribosomal protein 4 [Paraleucobryum enerve] Length = 183 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 140 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 181 >gi|307602395|gb|ADN68079.1| ribosomal protein S4 [Thuja koraiensis] gi|307602397|gb|ADN68080.1| ribosomal protein S4 [Thuja occidentalis] Length = 189 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 21/174 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQK++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPIRLKEKQKLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++E+D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLINIINQNIFISEQD 142 Query: 164 ---VPEYIS-VNHDNMVATFV-------RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + V RI ++ ++ LVVE+YSR Sbjct: 143 KMRVPPHLNWIKKKSQYSALVNKIIDNKRIGLNINEL---------LVVEYYSR 187 >gi|254935427|gb|ACT88101.1| ribosomal protein S4 [Pseudopanax laetus] Length = 181 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQXL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I+ R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 68 EMRLDNILXRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 127 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + S +HD + P K + +I + LVVE+Y Sbjct: 128 IQNSLD----------SSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYY 177 Query: 205 SR 206 SR Sbjct: 178 SR 179 >gi|28194719|gb|AAO33621.1|AF480976_1 ribosomal protein S4 [Weissia controversa] Length = 196 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|63191867|gb|AAY34893.1| small ribosomal protein subunit 4 [Weissia controversa] Length = 190 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|146261591|gb|ABQ15105.1| ribosomal protein S4 [Sedum rubrotinctum] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K Sbjct: 82 EMRLDNILFRLSMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPSDIITAKDDKKSRTL 141 Query: 153 VLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + ++P++++++ +I S K V + LVVE+YSR Sbjct: 142 IQNSIDSTPHEELPKHLTLHVFQYKGLVNQIIDS-KGVGLKI--NELLVVEYYSR 193 >gi|115380404|ref|ZP_01467397.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|310817857|ref|YP_003950215.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|115362588|gb|EAU61830.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|309390929|gb|ADO68388.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] Length = 207 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 5/183 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P R Y PG HG +K+K + +GL++ KQK+K Y ++ EK+ R A RS + Sbjct: 29 KDPSLRRPYPPGQHGPTQKTKMTDYGLRMMEKQKLKLSY-ELLEKQCRRYVDRAKRSGSN 87 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 + LI+ +ESR D +V RA + +I ARQFV H + V+G+ N+ K G +E+ Sbjct: 88 ATQVLITLIESRFDAMVLRAGYATSIRQARQFVRHGYFTVDGKKANLPGMEFKPGTTVEL 147 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 +++ +Q VL+ + A R VP ++++ R+ + +D+ PV + ++E Sbjct: 148 RERFRQHPLVLQVREKTAHRGVPSHVALLEGG---KGFRVLTRPEDIDPPVALDLAKIIE 204 Query: 203 FYS 205 FY+ Sbjct: 205 FYA 207 >gi|157689426|gb|ABV65269.1| ribosomal protein S4 [Brexia madagascariensis] Length = 181 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 9 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGEILLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R T+ ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 68 EMRLDNILFRLGMASTVPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRTL 127 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S +VP++++++ +I S K + + L+VE+YSR Sbjct: 128 IQNYLDS-FPHEEVPKHLTLHPIQYKGLVNQIIDS-KSIGLKI--NELLIVEYYSR 179 >gi|63078656|gb|AAY29414.1| ribosomal protein S4 [Weissia controversa var. densifolia] Length = 194 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|37548861|gb|AAO32699.1| ribosomal protein 4 [Pogonatum microstomum] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 KIIRRLGALPGLTNKTPQLKSGY---INQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VN Sbjct: 59 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGIAPTIPGARQLVNHKHILVNDRIVN 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 119 IPSYRCKPQDFITIKNRQESQAIITKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 175 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ESIGLKINELLVVEYYSR 193 >gi|33413201|emb|CAD86736.1| ribosomal protein small subunit 4 [Paraleucobryum longifolium] Length = 191 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|67035863|gb|AAY62858.1| small ribosomal protein subunit 4 [Potamium lonchophyllum] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L K+P + ++ K S + ++L KQK++ YYG I+E++ Sbjct: 3 KIIRRLGTLLGLTNKTP---QLKSSSINQPTSNKKISQYRIRLEEKQKLRFYYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V+ Sbjct: 59 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNSMVD 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K + + + E+ +P +++ N +I L Sbjct: 119 IPSYRCKPQDFITIKNQRKSETIISKNIEFYEKSKIPNHLTYNSLEKKGLINKI---LDR 175 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ESIGLKINELLVVEYYSR 193 >gi|28202174|ref|NP_777415.1| ribosomal protein S4 [Anthoceros formosae] gi|41688603|sp|Q85AX4|RR4_ANTFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|27807876|dbj|BAC55351.1| ribosomal protein S4 [Anthoceros formosae] gi|27807997|dbj|BAC55444.1| ribosomal protein S4 [Anthoceros formosae] Length = 202 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SKPSY + ++L KQK++ +YG I+E++ + A +++ Sbjct: 19 PGLTSKTPESKPSYINQSTSSRKISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRHVLVN +V+I S+RCK DVI Sbjct: 78 GSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHVLVNDCTVDIPSFRCKPQDVI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + E+ +P +++ N V + ++ + + LV Sbjct: 138 TIRDRQKSQNLMKRSRDSYEKYGIPNHLTFNS---VQNIGLVNETIDRDWIGLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|305672203|gb|ADM63525.1| ribosomal protein S4 [Desfontainia spinosa] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK+ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLCFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|77019181|emb|CAH60196.1| chloroplast 30S ribosomal protein S4 [Grimmia lisae] Length = 185 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + K + +++ +++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNNRIINIPSYRCKPQDFITIKDRQKSQSIIIKNMDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 183 >gi|146261569|gb|ABQ15094.1| ribosomal protein S4 [Itea virginica] Length = 187 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 15 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 73 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 74 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 133 Query: 153 V---LEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + L++S ++P++++++ + +V + D + V ++ N LVVE+Y Sbjct: 134 IQNYLDSS--PHEELPKHLTLHPFQYKGLVNQII-------DTKW-VGLKINELLVVEYY 183 Query: 205 SR 206 SR Sbjct: 184 SR 185 >gi|33413193|emb|CAD86732.1| ribosomal protein small subunit 4 [Dicranum fuscescens] Length = 191 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKF 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|222103418|gb|ACM44238.1| small ribosomal protein subunit 4 [Sphagnum subsecundum] Length = 185 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 2 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 61 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 120 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 121 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 177 Query: 201 VEFYSR 206 VE+YSR Sbjct: 178 VEYYSR 183 >gi|28194709|gb|AAO33616.1|AF480971_1 ribosomal protein S4 [Phascum curvicolle] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|12642224|gb|AAK00194.1| rps4 [Entosthodon bonplandii] Length = 194 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 28 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + + Sbjct: 87 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPEDFITVKNRKKSQAIITKNTY 146 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 147 FSQKSKVPNHLTFDFTQKKGLVTQI---LDRESIGLKINELLVVEYYSR 192 >gi|15991807|gb|AAF63982.2| small ribosomal protein 4 [Pogonatum urnigerum] Length = 181 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 79 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIITKNIDFSQKY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 139 KIPNHLTFNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 179 >gi|37960603|gb|AAP70671.1| small ribosomal protein 4 [Sphagnum recurvum] Length = 192 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 9 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRTK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 68 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 127 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 128 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 184 Query: 201 VEFYSR 206 VE+YSR Sbjct: 185 VEYYSR 190 >gi|37548859|gb|AAO32698.1| ribosomal protein 4 [Pogonatum japonicum] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 KIIRRLGALPGLTNKTPQLKSGY---INQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VN Sbjct: 59 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVN 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 119 IPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 175 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ESIGLKINELLVVEYYSR 193 >gi|305672301|gb|ADM63574.1| ribosomal protein S4 [Berzelia lanuginosa] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|184127979|gb|ACC67889.1| ribosomal protein small subunit 4 [Marattia attenuata] Length = 164 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 6/164 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L AKQ+++ YG ++E++ + A +++G L+ LE RLD I++R Sbjct: 2 SQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSPGQVLLQLLEMRLDNILFRLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERDV 164 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + + Sbjct: 61 SPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKDQI 120 Query: 165 PEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PE+++++ DN FV + + + LVVE+YSR Sbjct: 121 PEHLTLSSLEDNKPQGFVNRIVTRDSIGLNI--NELLVVEYYSR 162 >gi|63078585|gb|AAY29379.1| ribosomal protein S4 [Pleurochaete squarrosa] Length = 191 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|6002017|emb|CAA58914.1| ribosomal protein S4 [Acorus calamus] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 9/154 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 29 GSDLRNQFRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ +NHRH+LVNGR V+I SYRCK D+I K KQ + Sbjct: 88 EMRLDNILFRLGMAPTIPGARQLLNHRHILVNGRIVDIPSYRCKPRDIITT--KDKQRSK 145 Query: 153 VLEASQL---AERDVPEYISVN---HDNMVATFV 180 VL + + ++P++++++ H +V + Sbjct: 146 VLIQNNMDSSTREELPKHLTLDSFQHKGLVNQII 179 >gi|305672283|gb|ADM63565.1| ribosomal protein S4 [Viburnum opulus] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + +Q + Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITA--RDEQNSR 136 Query: 153 VLEASQL---AERDVPEYISVN 171 VL + L ++P++++++ Sbjct: 137 VLIQNSLDSSPHEELPKHLTLH 158 >gi|290487074|gb|ADD29921.1| ribosomal protein S4 [Nelumbo nucifera] Length = 201 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPKA-------GSDLRNQARSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D+I + QKS+ L + L++S ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSS--PHEELPKHLTLHSF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|33413247|emb|CAD86758.1| ribosomal protein small subunit 4 [Micromitrium tenerum] Length = 199 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 197 >gi|160415806|gb|ABX39210.1| small ribosomal protein 4 [Bucklandiella didyma] Length = 188 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + L+VE+YSR Sbjct: 146 KIPNHLTFNSLENKGLINQI---LDHESIGLKINKLLIVEYYSR 186 >gi|63078654|gb|AAY29413.1| ribosomal protein S4 [Weissia controversa] Length = 186 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 184 >gi|28194701|gb|AAO33612.1|AF480967_1 ribosomal protein S4 [Hymenostylium recurvirostre] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|63078605|gb|AAY29389.1| ribosomal protein S4 [Pleurochaete squarrosa] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|63078591|gb|AAY29382.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078601|gb|AAY29387.1| ribosomal protein S4 [Pleurochaete squarrosa] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|63191863|gb|AAY34891.1| small ribosomal protein subunit 4 [Pleurochaete squarrosa] Length = 192 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 190 >gi|63078577|gb|AAY29375.1| ribosomal protein S4 [Pleurochaete luteola] gi|63078579|gb|AAY29376.1| ribosomal protein S4 [Pleurochaete luteola] gi|63078587|gb|AAY29380.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078589|gb|AAY29381.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078593|gb|AAY29383.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078595|gb|AAY29384.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078597|gb|AAY29385.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078599|gb|AAY29386.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078607|gb|AAY29390.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078632|gb|AAY29402.1| ribosomal protein S4 [Tortella nitida] Length = 197 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|63078640|gb|AAY29406.1| ribosomal protein S4 [Trichostomum brachydontium var. cuspidatum] gi|63078644|gb|AAY29408.1| ribosomal protein S4 [Trichostomum pallidisetum] Length = 197 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|22854731|gb|AAN09785.1| small ribosomal protein 4 [Paraleucobryum longifolium] Length = 187 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 185 >gi|29422377|gb|AAO84584.1| small ribosomal protein 4 [Plagiomnium cuspidatum] Length = 197 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D+I +K + K + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 195 >gi|24473822|gb|AAL82754.1| small ribosomal subunit protein 4 [Brachymenium niveum] Length = 198 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 6 KIIRRLGALPGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 60 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 61 QLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 120 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 121 NIPSYRCKPEDSITIKDRQKSQAIISKNINLYQK----YKTPNH--LTYNFLKKKGLVNQ 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 ILDRESIGLKINELLVVEYYSR 196 >gi|63191873|gb|AAY34896.1| small ribosomal protein subunit 4 [Leptobarbula berica] Length = 194 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|305672249|gb|ADM63548.1| ribosomal protein S4 [Forgesia racemosa] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQILLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR ++I SYRCK D I + QKS+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRILDIPSYRCKPRDTITARDEQKSRTL 138 Query: 151 -ASVLEASQLAERDVPEYISVN 171 + L++S ++P +++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTLH 158 >gi|190361267|gb|ACE76938.1| ribosomal protein small subunit 4 [Crepidomanes thysanostomum] Length = 167 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 16/165 (9%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A R++G T L+ L+ RLD IV+ Sbjct: 15 KVSQFRVRLEAKQRLRFNYGS-TERQLLRYVRIARRAKGSTGQILLQLLQMRLDNIVFNL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 + PTI AARQ VNHRH+LVN R V+I SYRCK D+I +K + + E+ Sbjct: 74 QMAPTIRAARQLVNHRHILVNNRVVDIPSYRCKPKDIITLKNR-----------EFLEKK 122 Query: 164 VPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP+++++ + +N V +S + + + L+VE+YSR Sbjct: 123 VPDHLTLSFSENNRPKGLVNGIASRESIDLKI--NELLIVEYYSR 165 >gi|293611994|gb|ADE48441.1| ribosomal protein 4 [Encephalartos ferox] Length = 175 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 14 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + K A + + L+++D Sbjct: 73 GMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQKSRAMIDKNIDLSQKD 132 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 133 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 173 >gi|28194697|gb|AAO33610.1|AF480965_1 ribosomal protein S4 [Pleurochaete squarrosa] gi|63078581|gb|AAY29377.1| ribosomal protein S4 [Pleurochaete luteola] gi|63078583|gb|AAY29378.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078603|gb|AAY29388.1| ribosomal protein S4 [Pleurochaete squarrosa] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|28194689|gb|AAO33606.1|AF480961_1 ribosomal protein S4 [Pottiopsis caespitosa] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|75858251|gb|ABA28699.1| small ribosomal protein 4 [Lycopodium clavatum] Length = 190 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 23/189 (12%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K KP Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 PGLTHKTPKLKPDYSNQSTSSKKVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAK 65 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R++N+ SYRCK D+I Sbjct: 66 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDII 125 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQP 197 + +S+ + + +++++ +P ++ S+ + +V + S + + Sbjct: 126 TTRDRSESRTIIAKNNKISQTYKIPNHLTLHSLQNKGLVNKIIDRES------IDLNINE 179 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 180 LLVVEYYSR 188 >gi|67035742|gb|AAY62802.1| small ribosomal protein subunit 4 [Dicranoweisia crispula] Length = 194 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K K A + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKNGQKSQAIISKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLQKKGLVNQI---LDRESIDLKINELLVVEYYSR 192 >gi|305672337|gb|ADM63592.1| ribosomal protein S4 [Cuttsia viburnea] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E + + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTEGQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTITARDEQKSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|293612006|gb|ADE48447.1| ribosomal protein 4 [Encephalartos whitelockii] Length = 174 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 13 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + K A + + L+++D Sbjct: 72 GMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQKSRAMIDKNIDLSQKD 131 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 132 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 172 >gi|63191777|gb|AAY34848.1| small ribosomal protein subunit 4 [Psilopilum cavifolium] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAGRAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|305672329|gb|ADM63588.1| ribosomal protein S4 [Morina longifolia] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 GL Q R K S + ++L KQK++ +YG ++E++ + A + +G T L+ LE Sbjct: 22 GLRNQSRSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAGKVKGSTGQVLLQLLEM 80 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD I++R PTI ARQ VNHRH+LVNGR ++I SYRCK D+I + + A + Sbjct: 81 RLDNILFRLGMAPTIPGARQLVNHRHILVNGRIIDIPSYRCKPRDIIMARDEQNSRALI 139 >gi|293611996|gb|ADE48442.1| ribosomal protein 4 [Encephalartos gratus] Length = 172 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + K A + + L+++D Sbjct: 70 GMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQKSRAMIDKNIDLSQKD 129 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 130 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 170 >gi|293611998|gb|ADE48443.1| ribosomal protein 4 [Encephalartos hildebrandtii] gi|293612004|gb|ADE48446.1| ribosomal protein 4 [Encephalartos villosus] Length = 166 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 5 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + K A + + L+++D Sbjct: 64 GMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQKSRAMIDKNIDLSQKD 123 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 124 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 164 >gi|295839931|ref|ZP_06826864.1| ribosomal protein S4 [Streptomyces sp. SPB74] gi|302517976|ref|ZP_07270318.1| ribosomal protein S4 [Streptomyces sp. SPB78] gi|318057087|ref|ZP_07975810.1| 30S ribosomal protein S4 [Streptomyces sp. SA3_actG] gi|318077859|ref|ZP_07985191.1| 30S ribosomal protein S4 [Streptomyces sp. SA3_actF] gi|197696761|gb|EDY43694.1| ribosomal protein S4 [Streptomyces sp. SPB74] gi|302426871|gb|EFK98686.1| ribosomal protein S4 [Streptomyces sp. SPB78] Length = 204 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 8/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y DISE++ + A ++ G T L+ LE RLD +V R+ TI+ ARQ V H H Sbjct: 60 QY-DISERQMARAYDRARKAEGKTGEALVIELERRLDALVLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 + VNG V+ S+R + DV+ V+++S+ E + + P Y+ VN + Sbjct: 119 IEVNGTKVDKPSFRVRPDDVVMVRERSRSKHPFQVAREGGYDTDGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ K++ PVI LVVE+Y+R Sbjct: 179 RLDRDPNR-KEI--PVICDEQLVVEYYAR 204 >gi|28194739|gb|AAO33631.1|AF480986_1 ribosomal protein S4 [Pottia bryoides] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFCQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|218157233|gb|ACK58433.1| ribosomal protein subunit 4 [Psilopilum cavifolium] Length = 192 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAGRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|63078636|gb|AAY29404.1| ribosomal protein S4 [Tortella tortuosa] Length = 196 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKF 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 QIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|11228652|gb|AAG33111.1| small ribosomal protein 4 [Leucoloma humbertii] gi|22854721|gb|AAN09780.1| small ribosomal protein 4 [Leucoloma sprengelianum] Length = 191 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 VPTI ARQ VNHRH+LVN R VNI SYRCK D I +K + L+ + +++ Sbjct: 89 GIVPTIPGARQLVNHRHILVNNRIVNIPSYRCKPKDFITIKDRQNFQNMTLKNTGFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I + + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---IDQESIGLKINELLVVEYYSR 189 >gi|293611990|gb|ADE48439.1| ribosomal protein 4 [Dioon spinulosum] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R+ Sbjct: 12 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRS 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 71 GMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIEKNLDLSQKD 130 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 131 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 171 >gi|255017199|ref|ZP_05289325.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL F2-515] Length = 152 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 5/157 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +Q KQK++ YG ++E++F++ F +A + +G N + LE RLD IVYR T Sbjct: 1 MQQAEKQKLRHMYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTR 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYIS 169 AARQ VNH H+ V+G+ V+I SY+ G VI V +KS + +++ E+ +++ VPEY++ Sbjct: 60 RAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVCEKSAKNSAIAESLEVSSF-VPEYVT 118 Query: 170 VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + R+P + + +VEFYSR Sbjct: 119 FDAEKLTGSLNRLP---ERSELAAEINEAFIVEFYSR 152 >gi|184127935|gb|ACC67867.1| ribosomal protein small subunit 4 [Christensenia aesculifolia] Length = 200 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 29/178 (16%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PT AARQ VNHRH+LVN R VNI SYRCK D+I V+ Q + Q+ L + Sbjct: 94 GMSPTTPAARQLVNHRHILVNNRLVNIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKD 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYP--------------VIMQPNLVVEFYSR 206 +PE++++ SSL D P + + LVVE+YSR Sbjct: 154 QIPEHLTL-------------SSLDDNEKPQGFVNRIVTRDSIGLNINELLVVEYYSR 198 >gi|28194681|gb|AAO33602.1|AF480957_1 ribosomal protein S4 [Syntrichia ammonsiana] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LNQESIGLKINELLVVEYYSR 193 >gi|14090496|gb|AAK53533.1| small ribosomal protein 4 [Paraleucobryum longifolium] gi|14090498|gb|AAK53534.1| small ribosomal protein 4 [Paraleucobryum longifolium] Length = 183 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 181 >gi|24473818|gb|AAL82752.1| small ribosomal subunit protein 4 [Brachymenium systylium] Length = 199 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 7 KIIRRLGALPGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 61 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 62 QLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 121 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 122 NIPSYRCKPEDSITIKDRQKSQAIISKNINLYQK----YKTPNH--LTYNFLKKKGLVNQ 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ILDRESIGLKINELLVVEYYSR 197 >gi|307602399|gb|ADN68081.1| ribosomal protein S4 [Thuja plicata] Length = 189 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 21/174 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQK++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQKLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++E+D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLINIINQNIFISEQD 142 Query: 164 ---VPEYIS-----VNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +V + RI ++ ++ LVVE+YSR Sbjct: 143 QMRVPPHLNWIKKKSQYSALVNKIIDNKRIGLNINEL---------LVVEYYSR 187 >gi|305672381|gb|ADM63614.1| ribosomal protein S4 [Valdivia gayana] Length = 173 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQILLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R PTI ARQ VNHRH+LVNGR ++I SYRCK D I + QKS+ L Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRILDIPSYRCKPRDTITARDEQKSRTL 138 Query: 151 -ASVLEASQLAERDVPEYISVN 171 + L++S ++P +++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTLH 158 >gi|11228654|gb|AAG33112.1| small ribosomal protein 4 [Leucoloma rutenbergii] Length = 191 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 VPTI ARQ VNHRH+LVN R VNI SYRCK D I +K + L+ + +++ Sbjct: 89 GIVPTIPGARQLVNHRHILVNNRIVNIPSYRCKPKDFITIKDRQNFQNMTLKNTGFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I + + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---IDQESIGLKINELLVVEYYSR 189 >gi|24473806|gb|AAL82746.1| small ribosomal subunit protein 4 [Acidodontium megalocarpum] Length = 199 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDQQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|67035600|gb|AAY62731.1| small ribosomal protein subunit 4 [Micromitrium austinii] Length = 188 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 186 >gi|184128001|gb|ACC67900.1| ribosomal protein small subunit 4 [Angiopteris evecta] Length = 164 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 6/164 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L AKQ+++ +G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 2 SQYCIRLEAKQRLRFNHG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERDV 164 PTI AARQ VNHRH+LVN R V+I SYRCK D+I V+ Q + Q+ L + + Sbjct: 61 SPTIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIISVRDQTNSQILVKKNLESLNKDQI 120 Query: 165 PEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PE+++ + DN FV + + + LVVE+YSR Sbjct: 121 PEHLTFSSLEDNKPQGFVNRIVTRDSIGLDI--NELLVVEYYSR 162 >gi|184127933|gb|ACC67866.1| ribosomal protein small subunit 4 [Christensenia aesculifolia] Length = 186 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 29/183 (15%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 16 QSASKKISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 74 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEAS 157 I++R PT AARQ VNHRH+LVN R VNI SYRCK D+I V+ Q + Q+ Sbjct: 75 ILFRLGMSPTTPAARQLVNHRHILVNNRLVNIPSYRCKPKDIISVRDQTNSQILVKKNLE 134 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYP--------------VIMQPNLVVEF 203 L + +PE++++ SSL D P + + LVVE+ Sbjct: 135 SLNKDQIPEHLTL-------------SSLDDNEKPQGFVNRIVTRDSIGLNINELLVVEY 181 Query: 204 YSR 206 YSR Sbjct: 182 YSR 184 >gi|42794660|gb|AAS45727.1| Rps4 [Macleania coccoloboides] Length = 211 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 97/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKLQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N V+ + K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPXHLTLNRGQYKG-LVKQIXNXKWVGLKI--KELLVVEYYSR 207 >gi|67035564|gb|AAY62713.1| small ribosomal protein subunit 4 [Arctoa fulvella] Length = 199 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNCQKSQAMIIKNVDFSQKA 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|63191857|gb|AAY34888.1| small ribosomal protein subunit 4 [Streptocalypta tortelloides] Length = 198 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSFEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|3914855|sp|O20236|RR4_ISOTA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292913|emb|CAA92541.1| ribosomal protein S4 [Isophysis tasmanica] Length = 182 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNYIASSPHE-ELPNHLTID 160 >gi|293611982|gb|ADE48435.1| ribosomal protein 4 [Dioon edule] gi|293611984|gb|ADE48436.1| ribosomal protein 4 [Dioon mejiae] Length = 181 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R+ Sbjct: 20 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRS 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 79 GMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIEKNLDLSQKD 138 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 139 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 179 >gi|293634039|gb|ADE60399.1| ribosomal protein subunit 4 [Pogonatum japonicum] Length = 195 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|290487082|gb|ADD29925.1| ribosomal protein S4 [Ximenia americana] Length = 201 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G RS L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRARS---DLRNQSRSGKRSQYRIRLEEKQKLRL 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++F + +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQFLKYVRITGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + QKSK L + L++S +++P+++++ Sbjct: 116 ILVNGRVVDIPSYRCKPRDIITARDEQKSKALIQNYLDSS--PHKELPKHLALRAFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LV+E+YSR Sbjct: 174 FVNQIIDS-KWVGLKI--NELLVIEYYSR 199 >gi|290487064|gb|ADD29916.1| ribosomal protein S4 [Dillenia indica] Length = 201 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G TRS L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG-SLPGLTSKRPKTRS---DLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMTSTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 +LVN R V+I SYRCK D++ VK + K A + L++S ++P++++++ Sbjct: 116 ILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS--PHEELPKHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KCVGLKI--NELLVVEYYSR 199 >gi|162415086|gb|ABX89117.1| ribosomal protein S4 [Pottia intermedia] Length = 189 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFCQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|16565382|gb|AAL26206.1|AF313605_1 small ribosomal protein 4 [Huperzia lucidula] Length = 192 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K KP Y + ++L KQK++ ++G ++E++ + A R++ Sbjct: 9 PGLTRKTPKXKPDYINKSTPNKKVSQYCIRLEEKQKLRFHHG-LAEQQLLKYVRIARRAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R++N+ SYRCK D+I Sbjct: 68 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDII 127 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + + A + + + ++ +P +++++ V +I + + + LV Sbjct: 128 TTRDRPESRARITKNYEFSQTYKIPNHLTLHSLQSVGLVNKI---VDRESIDLNINELLV 184 Query: 201 VEFYSR 206 VE+YSR Sbjct: 185 VEYYSR 190 >gi|293634057|gb|ADE60408.1| ribosomal protein subunit 4 [Pogonatum urnigerum] Length = 192 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 90 GIAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQESQAIITKNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|20531075|gb|AAM27359.1| ribosomal protein 4 [Diphyscium perminutum] Length = 185 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 83 GMAPTILGARQLVNHRHILVNERIVNIPSYRCKPQDFITIKDRQKSQNIIVKNMDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFDSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|293612002|gb|ADE48445.1| ribosomal protein 4 [Encephalartos umbeluziensis] Length = 171 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 10 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 68 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + K A + + L+++D Sbjct: 69 GMTPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQKSRAMIDKNIDLSQKD 128 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 129 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 169 >gi|293634049|gb|ADE60404.1| ribosomal protein subunit 4 [Pogonatum perichaetiale] Length = 190 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|11228613|gb|AAG33092.1| small ribosomal protein 4 [Arctoa falcata] Length = 190 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNCQKSQAMIIKNVDFSQKA 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|62288926|sp|P69632|RR4_ARICA RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288927|sp|P69633|RR4_ARIPL RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292726|emb|CAA92531.1| ribosomal protein S4 [Aristea capitata] gi|2292728|emb|CAA92530.1| ribosomal protein S4 [Aristea platycaulis] Length = 183 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITTKNKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS ++P +++++ Sbjct: 141 IQNYIASSPHHEELPNHLTID 161 >gi|29422371|gb|AAO84581.1| small ribosomal protein 4 [Breutelia chrysea] Length = 199 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 10/199 (5%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P +N S P + K S + ++L KQK++ +YG I+E+ Sbjct: 7 RIIRRLGALPGLTNKTPQLNLSSINPSTSNK----KISQYRIRLEEKQKLRFHYG-ITER 61 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 62 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 121 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 122 DIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENXXLVXQI---LD 178 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 179 RESIGLKINELLVVEYYSR 197 >gi|63191853|gb|AAY34886.1| small ribosomal protein subunit 4 [Molendoa sendtneriana] Length = 191 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 + PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 89 RMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQIMITKNVDFSQNY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LNQESIGLKINELLVVEYYSR 189 >gi|157689556|gb|ABV65334.1| ribosomal protein S4 [Spiraea tomentosa] Length = 188 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 105/179 (58%), Gaps = 19/179 (10%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 19 LRNQSRPGKKSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMR 77 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V+ + K A + Sbjct: 78 LDNILFRLGMTSTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITVRDEQKSRALIQN 137 Query: 154 -LEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 L++S ++P++++++ ++ +V + D + V ++ N LVVE+YSR Sbjct: 138 YLDSS--PREELPKHLTLHPFQYEGLVNQII-------DSKW-VGLKINELLVVEYYSR 186 >gi|33413189|emb|CAD86770.1| ribosomal protein small subunit 4 [Dicranoloma billarderi] Length = 190 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K A +++ +++ Sbjct: 88 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKNRQKSQAMIIKNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|11878070|gb|AAG40783.1| small ribosomal protein 4 [Sphagnum palustre] Length = 186 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 3 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 62 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 121 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 122 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 178 Query: 201 VEFYSR 206 VE+YSR Sbjct: 179 VEYYSR 184 >gi|77019161|emb|CAH60186.1| chloroplast 30S ribosomal protein S4 [Grimmia dissimulata] Length = 177 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K + +++ +++ Sbjct: 75 GMAPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKDRQKSQSMIIKNMDFSQKY 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 135 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 175 >gi|21914156|gb|AAM81300.1| ribosomal protein subunit 4 [Bryum bicolor] Length = 195 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKNRQKSQAIISKNLNLYQK- 151 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 152 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 193 >gi|17154613|emb|CAC83919.1| ribosomal protein S4 [Olsynium filifolium] Length = 182 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEKKQKLRFHYG-LTEQQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNSIASSSHE-ELPNHLTID 160 >gi|11121109|emb|CAC14741.1| ribosomal protein subunit 4 [Bryum billardierei] Length = 199 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 7 RIIRRLGALTGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 61 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 62 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 121 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 122 NIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK----YKTPNH--LTYNFLKKKGLVNQ 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ILDRESIGLKINELLVVEYYSR 197 >gi|3914856|sp|O20254|RR4_LIBFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292919|emb|CAA92543.1| ribosomal protein S4 [Libertia formosa] Length = 182 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNSIASSPHE-ELPNHLTID 160 >gi|306486207|gb|ADM92745.1| ribosomal protein S4 [Davidia involucrata] Length = 201 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 147 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 148 IQNSLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|322719507|gb|ADX07690.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] gi|322719511|gb|ADX07692.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] gi|322719513|gb|ADX07693.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 198 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIYFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|7576765|gb|AAF63979.1| small ribosomal protein 4 [Meiotrichum lyallii] Length = 191 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|11228615|gb|AAG33093.1| small ribosomal protein 4 [Arctoa fulvella] Length = 191 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNCQKSQAMIIKNVDFSQKA 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|74273235|gb|ABA01317.1| ribosomal protein S4 [Barteria sp. LBF-2005] Length = 160 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKTQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLVRYVHIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P++++++ Sbjct: 133 IQNYIASPPPE-ELPKHLTID 152 >gi|254935395|gb|ACT88085.1| ribosomal protein S4 [Raukaua simplex] Length = 181 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +Y ++E++ + A +++G T L+ L Sbjct: 9 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHY-XLTERQLLKYVRIAGKAKGSTGQVLLQLL 67 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + Sbjct: 68 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIASYRCKPRDIITARDEENSRTL 127 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + S +HD + P K + +I + LVVE+Y Sbjct: 128 IQNSLD----------SSSHDELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYY 177 Query: 205 SR 206 SR Sbjct: 178 SR 179 >gi|222103480|gb|ACM44269.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 202 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 100 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIMKNIYFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 200 >gi|121761742|gb|ABM64958.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761748|gb|ABM64961.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761765|gb|ABM64969.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761785|gb|ABM64979.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761794|gb|ABM64983.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761818|gb|ABM64995.1| ribosomal protein S4 [Plagiomnium acutum] gi|121761871|gb|ABM65021.1| ribosomal protein S4 [Plagiomnium acutum] Length = 195 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D+I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|17154719|emb|CAC83931.1| ribosomal protein S4 [Zephyra elegans] Length = 174 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKNQFRSGKRSQYRIRLEEKQKLRFHYG-LTEQQLLRYVHIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P++++++ Sbjct: 133 IQNYIASSPPE-ELPKHLTID 152 >gi|289066816|ref|YP_003434334.1| ribosomal protein S4 [Vigna radiata] gi|259020003|gb|ACV90201.1| ribosomal protein S4 [Vigna radiata] Length = 201 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGYLPGLTSKKPTVKNEF----RNQSRFSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + +++G T L+ LE RLD I++R TI ARQF+NHRH Sbjct: 57 HYG-LTERQLLKYVRISGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQFINHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 VLVNGR V+I SYRCK D+I K QKSK L S E+ +P +++V+ Sbjct: 116 VLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIQNYLDSAPHEK-LPNHLTVHPFQYKGL 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + + LVVE+YSR Sbjct: 175 INQI---IDNKWVGLKINELLVVEYYSR 199 >gi|17154615|emb|CAC83920.1| ribosomal protein S4 [Solenomelus pedunculatus] Length = 182 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNSIASSPHE-ELPNHLTID 160 >gi|22854699|gb|AAN09769.1| small ribosomal protein 4 [Dicranoloma blumii] Length = 191 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K A +++ +++ Sbjct: 89 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKNRQKSQAMIIKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|11467819|ref|NP_050870.1| ribosomal protein S4 [Nephroselmis olivacea] gi|26399202|sp|Q9TKX5|RR4_NEPOL RecName: Full=30S ribosomal protein S4, chloroplastic gi|5880748|gb|AAD54841.1|AF137379_64 ribosomal protein S4 [Nephroselmis olivacea] Length = 202 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+GE L G + + R PG HG K KPS + ++L KQK++ Sbjct: 1 MSRYRGPRLKIVRRLGE-LPGLTRK-MAKRKSPPGQHGAASK-KPSQYRIRLEEKQKLRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R++G + NL+ LE RLDT ++R PT+ +ARQ + H H Sbjct: 58 NYG-VTEKQLLRYMQRARRAKGSSGENLLQLLEMRLDTTIFRLGMAPTMLSARQLITHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYISVNHDNMVAT 178 +LV+ + VNI SY+C + I ++ S+ ++E S + P ++ + + + Sbjct: 117 ILVSEQRVNIPSYQCSPKEKISIRSNSRS-RKLIEGYMSTMGSIVTPPHLELKKEKLEGN 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYS 205 I + V P+ LVVE+YS Sbjct: 176 IQEIIDR-QWVGLPI--NELLVVEYYS 199 >gi|306450772|gb|ADM88645.1| small ribosomal protein 4 [Parisia laevipila] Length = 197 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K A +++ +++ Sbjct: 95 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKNRQKSQAMIIKNIDFSQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ +I L + + LVVE+YSR Sbjct: 155 KVPNHLTFGSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|157689576|gb|ABV65344.1| ribosomal protein S4 [Trochodendron aralioides] Length = 201 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR V+I SYRCK D+I + QKS+ L S E ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQNYFDSSPHE-ELPKHLTLHSFQYKGL 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 175 VNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|37960579|gb|AAP70659.1| small ribosomal protein 4 [Sphagnum compactum] Length = 193 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 10 PGLTNKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 68 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 69 GSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 128 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 129 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 185 Query: 201 VEFYSR 206 VE+YSR Sbjct: 186 VEYYSR 191 >gi|222103430|gb|ACM44244.1| small ribosomal protein subunit 4 [Oxystegus tenuirostris] Length = 202 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 200 >gi|121761808|gb|ABM64990.1| ribosomal protein S4 [Plagiomnium acutum] Length = 185 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D+I +K + K + + ++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 183 >gi|118626039|emb|CAL41745.1| small ribosomal protein 4 [Anastrophyllum saxicola] Length = 191 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNNTVDISSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 127 TIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLXGS---INQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|42794732|gb|AAS45761.1| Rps4 [Vaccinium poasanum] Length = 211 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ V HRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVTHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + ++ LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWV--GLXIKELLVVEYYSR 207 >gi|293634059|gb|ADE60409.1| ribosomal protein subunit 4 [Pogonatum urnigerum] Length = 194 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 92 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|190361233|gb|ACE76921.1| ribosomal protein small subunit 4 [Trichomanes arbuscula] Length = 167 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 18/166 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG E++ + A R++G T L+ LE RLD IV+R Sbjct: 15 KVSQFGIRLEAKQRLRFNYGS-RERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIVFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLA 160 PTI AARQ VNHRHVLVN V+I SYRCK+ D+I ++ + K++ LE S + Sbjct: 74 DMAPTIPAARQLVNHRHVLVNNHIVDIPSYRCKDKDLITLRSQESSRKRIPDHLELSS-S 132 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E + P+ + N +A I ++ ++ LVVE+YSR Sbjct: 133 EGNNPKGLV----NGIANRESIDLNINEL---------LVVEYYSR 165 >gi|157689432|gb|ABV65272.1| ribosomal protein S4 [Bursera simaruba] Length = 194 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 81 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDDQKSRAL 140 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S E +P+++++ +I S K V + LVVE+YSR Sbjct: 141 IQNYLDSSHHEE--LPKHLTLQAFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 192 >gi|83416512|gb|ABC18276.1| small ribosomal subunit protein 4 [Bryum bicolor] Length = 199 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|63078611|gb|AAY29392.1| ribosomal protein S4 [Tortella arctica] gi|63078613|gb|AAY29393.1| ribosomal protein S4 [Tortella arctica] gi|63078630|gb|AAY29401.1| ribosomal protein S4 [Tortella inclinata] Length = 197 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKF 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|27227947|gb|AAN85771.1| ribosomal protein subunit 4 [Plagiobryum orthothecium] Length = 194 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 150 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 151 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 192 >gi|110456762|gb|ABG74849.1| ribosomal protein S4 [Menodora longiflora] Length = 213 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 104/190 (54%), Gaps = 13/190 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPKSP N + G G Q R K S + ++L KQK+ +YG + E + + A +++ Sbjct: 28 RPKSP-NDKD-GSGRRKQTRSRKKSQYRIRLEEKQKLCFHYG-LREYQLLKYVRIAAKAK 84 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNH H+LVNGR V+ SYRCK D+I Sbjct: 85 GSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHSHILVNGRIVDRSSYRCKPQDII 144 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L S L ++ +P ++++ I S + V ++ N Sbjct: 145 LTKDTQKSRTLIQNSLTLSFLKKKKLPFHLTLQPSQYKGLVKEIVDSKR-----VGLKIN 199 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 200 ELLVVEYYSR 209 >gi|32401864|gb|AAP80920.1| small ribosomal protein 4 [Torreya taxifolia] Length = 192 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 7/139 (5%) Query: 38 GQRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 G+R+ SKP S + + L+ KQ+++ +YG ++E++ + A R+ G T L+ LE Sbjct: 18 GKRKHSKPPKPSKYPVCLKEKQRLRFHYG-LTERQLLQYVRIARRANGPTGQVLLQLLEM 76 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLDTI++R TI ARQ VNHRH+LVN R V+I SYRCK D+I +K + + + Sbjct: 77 RLDTIIFRLGMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSRNIIN 136 Query: 155 EASQLAERD---VPEYISV 170 + L++RD VP ++++ Sbjct: 137 KNIDLSQRDKIWVPNHLNL 155 >gi|63191855|gb|AAY34887.1| small ribosomal protein subunit 4 [Aschisma carniolicum] Length = 172 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 70 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 129 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 170 >gi|121761877|gb|ABM65024.1| ribosomal protein S4 [Plagiomnium confertidens] Length = 195 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|254995575|emb|CAO82746.1| ribosomal protein S4 [Lycopodium deuterodensum] Length = 172 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 98/167 (58%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ A + + ++ ++ Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRSESRAIIAKNNKFSQTY 129 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V I L D+ + LVVE+YSR Sbjct: 130 KIPNHLTLYSLQNKGLVNKI--IDRELIDLN----INELLVVEYYSR 170 >gi|162415096|gb|ABX89122.1| ribosomal protein S4 [Barbula indica] Length = 189 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQVMITKNLDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNFLEKKGLINQI---LDQESLGLKINELLVVEYYSR 187 >gi|37960575|gb|AAP70657.1| small ribosomal protein 4 [Sphagnum angustifolium] gi|37960589|gb|AAP70664.1| small ribosomal protein 4 [Sphagnum fuscum] gi|37960597|gb|AAP70668.1| small ribosomal protein 4 [Sphagnum portoricense] gi|37960599|gb|AAP70669.1| small ribosomal protein 4 [Sphagnum pulchrum] gi|37960601|gb|AAP70670.1| small ribosomal protein 4 [Sphagnum quinquefarium] gi|37960607|gb|AAP70673.1| small ribosomal protein 4 [Sphagnum squarrosum] gi|37960613|gb|AAP70676.1| small ribosomal protein 4 [Sphagnum subnitens] gi|37960619|gb|AAP70679.1| small ribosomal protein 4 [Sphagnum wulfianum] Length = 195 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 131 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|21914174|gb|AAM81309.1| ribosomal protein subunit 4 [Plagiobryum uliginosum] Length = 197 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQK- 153 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 154 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 195 >gi|118625963|emb|CAL39303.1| small ribosomal protein 4 [Syzygiella rubricaulis] Length = 202 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +YR PTI ARQ VNHRH+ +N V+I SY CK GD I Sbjct: 78 GSTGQILLQLLEMRLDNTIYRLGMAPTIPGARQLVNHRHISINNSIVDIPSYNCKPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIKNKEKSQSIITQNTNLFQKVKIPSHLTFDSTQLRG-FVNQTINREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63078642|gb|AAY29407.1| ribosomal protein S4 [Trichostomum crispulum var. angustifolium] Length = 197 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVIITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|63191811|gb|AAY34865.1| small ribosomal protein subunit 4 [Bellibarbula recurva] Length = 199 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K V + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMVTKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGL---INQVLDQESIGLKINELLVVEYYSR 197 >gi|74273105|gb|ABA01252.1| ribosomal protein S4 [Passiflora kawensis] Length = 183 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 18/187 (9%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKGR 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P++++++ + +I S V +Q N L Sbjct: 121 KDEQKSKDMIQN-SLDSFRQEQLPKHLTLHRSQYKGSVNQIIDS-----KWVGLQINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|219673972|ref|YP_002456457.1| ribosomal protein S4 [Trifolium subterraneum] gi|193788941|gb|ACF20537.1| ribosomal protein S4 [Trifolium subterraneum] Length = 201 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q ++ S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPTD----GSKLRNQSPPTQKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 VLVNGR V+I SYRCK D+I K QKS+ L + LE+S +P +++++ Sbjct: 116 VLVNGRIVDIPSYRCKPQDIITAKGEQKSRTLIQNSLESS--PRGALPTHLTLHPLQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + M LVVE+YSR Sbjct: 174 LVNQIIDS-KWV--GLEMNELLVVEYYSR 199 >gi|32401890|gb|AAP80933.1| small ribosomal protein 4 [Thuja plicata] Length = 190 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 21/174 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQK++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 25 KPSKYPVRLKEKQKLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++E+D Sbjct: 84 GMALTIPEARQLVNHRHILVNGRIVHIPSYRCKPQDLISIKEKQGLINIINQNIFISEQD 143 Query: 164 ---VPEYIS-----VNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +V + RI ++ ++ LVVE+YSR Sbjct: 144 QMRVPPHLNWIKKKSQYSALVNKIIDNKRIGLNINEL---------LVVEYYSR 188 >gi|28194705|gb|AAO33614.1|AF480969_1 ribosomal protein S4 [Acaulon triquetrum] gi|28194707|gb|AAO33615.1|AF480970_1 ribosomal protein S4 [Pottia recta] gi|28194733|gb|AAO33628.1|AF480983_1 ribosomal protein S4 [Pottia davalliana] Length = 196 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|63191771|gb|AAY34845.1| small ribosomal protein subunit 4 [Meiotrichum lyallii] Length = 188 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|13518426|ref|NP_084786.1| ribosomal protein S4 [Lotus japonicus] gi|26399164|sp|Q9BBT5|RR4_LOTJA RecName: Full=30S ribosomal protein S4, chloroplastic gi|13358967|dbj|BAB33184.1| ribosomal protein S4 [Lotus japonicus] Length = 201 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R +K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----TVGSELRNQSRSTKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG V+I SYRCK D+I K K + + + A R ++P ++++ Sbjct: 116 VFVNGHIVDIPSYRCKPQDIITAKDNKKSKTLIQNSLESAPREELPTHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 176 NQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|63145917|gb|AAY33896.1| small ribosomal protein 4 [Symphyogyna marginata] Length = 197 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 18/205 (8%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +RS G Q +K S + ++L KQK++ +YG ++ Sbjct: 3 RAKIIRRLGA-LPGXSYEMIGSRS---GYTNQLATNKKISQYRIRLEEKQKLRFHYG-LT 57 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN Sbjct: 58 ERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVNDN 117 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS- 184 +VNI SY CK DVI +K + + + + + L ER +P +++ + + +I Sbjct: 118 AVNIPSYNCKPQDVITIKDRRESQSVITKNIHLFRERKIPNHLTFDSTRFCGSVNQIIDR 177 Query: 185 ---SLKDVPYPVIMQPNLVVEFYSR 206 SLK + LVVE+YSR Sbjct: 178 EWISLK-------INELLVVEYYSR 195 >gi|63078624|gb|AAY29398.1| ribosomal protein S4 [Tortella fragilis] Length = 197 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKF 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|42718064|gb|AAS38454.1| rps4 [Brachymitrion immersum] Length = 189 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KTSQYRIRLKEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKNRQKSQAIIKKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKNQGLINQI---LDRESIGLKINELLVVEYYSR 187 >gi|21914184|gb|AAM81314.1| ribosomal protein subunit 4 [Rhodobryum spathulatum] Length = 196 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 4 KIIRRLGALPGPTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 58 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 59 QLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 118 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRC+ D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 119 NIPSYRCRPEDFITIKDRQKSQAIISKNLNLYQK----YKTPNH--LTYNFLKKKGLVNQ 172 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 173 ILDRESIGLKINELLVVEYYSR 194 >gi|24473808|gb|AAL82747.1| small ribosomal subunit protein 4 [Acidodontium sprucei] Length = 199 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 7 RIIRRLGALRGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 61 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 62 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 121 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 122 NIPSYRCKPEDFITIKNRQKSQAIISKNLNLHQK----YKTPNH--LTYNFLKKKGLVNQ 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ILDRESIGLKINELLVVEYYSR 197 >gi|63078615|gb|AAY29394.1| ribosomal protein S4 [Tortella densa] Length = 193 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKF 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 191 >gi|28194789|gb|AAO33656.1|AF481011_1 ribosomal protein S4 [Pottia wilsonii] Length = 196 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K QL + Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQLMVTKNVDFYQKS 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 QIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|20531120|gb|AAM27380.1| ribosomal protein 4 [Timmia megapolitana] Length = 191 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A +++ +++ Sbjct: 89 NMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKNRQKSQAIIMKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|33413175|emb|CAD86723.1| ribosomal protein small subunit 4 [Ptychomitrium crassinervium] Length = 192 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R VNI SYRCK D I +K + K V++ +++ Sbjct: 90 SMAPTIPGARQLINHRHILVNNRIVNIPSYRCKPQDFITLKARQKFQDMVIKNVDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 150 KVPNHLTFNSLEKKGLVNQI---LDHGSIGLKINELLVVEYYSR 190 >gi|22854697|gb|AAN09768.1| small ribosomal protein 4 [Dicranoloma billarderi] Length = 182 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I VK + K A +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITVKNRQKSQAMIIKNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|7576757|gb|AAF63975.1| small ribosomal protein 4 [Dawsonia papuana] Length = 191 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDSITIKNRQKSQNIIVKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ NH +I L + + LVVE+YSR Sbjct: 149 KIPNHLIFNHLERKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|67035616|gb|AAY62739.1| small ribosomal protein subunit 4 [Pleurophascum grandiglobum] Length = 193 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL---A 160 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + A +++ + Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQTSQAIIIKNKNVDFSQ 148 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + + LVVE+YSR Sbjct: 149 KYKVPNHLTFNSLEKKGLVNQI---LDEESIGLKINELLVVEYYSR 191 >gi|73476076|emb|CAE45347.1| ribosomal protein S4 [Melasphaerula ramosa] Length = 182 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 3/138 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE R Sbjct: 24 LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLLEMR 82 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASV 153 LD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I KQ+SK L Sbjct: 83 LDNILFRLGMASTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITTKNKQRSKALIQN 142 Query: 154 LEASQLAERDVPEYISVN 171 AS + ++P +++++ Sbjct: 143 FIASSPHQEELPNHLTID 160 >gi|305672253|gb|ADM63550.1| ribosomal protein S4 [Lonicera japonica] Length = 167 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 6/116 (5%) Query: 34 PGLH-----GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL 88 PGL GQ R K S + ++L KQK++ +YG ++E++ + A +++G T L Sbjct: 10 PGLTKKGPIGQSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVL 68 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 + LE RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + Sbjct: 69 LQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITAR 124 >gi|157689570|gb|ABV65341.1| ribosomal protein S4 [Tapiscia sinensis] Length = 186 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSDLRNQSRFGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 73 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 132 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P+++ + H V K V + LVVE+YSR Sbjct: 133 IKNYLDSS--THEELPKHL-ILHTFQYKGLVNQIIDRKWVGLKI--NELLVVEYYSR 184 >gi|157689458|gb|ABV65285.1| ribosomal protein S4 [Crypteronia paniculata] Length = 191 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 19 GSDFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKCVRIAGKAKGSTGQVLLQLL 77 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 78 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 137 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + Y+ S H+ + P K + +I + LVV Sbjct: 138 -------------IQNYLDSSAHEELSKHLTLHPVQYKGLVNQIIDSKWVGLKINELLVV 184 Query: 202 EFYSR 206 E+YSR Sbjct: 185 EYYSR 189 >gi|63078648|gb|AAY29410.1| ribosomal protein S4 [Oxystegus tenuirostris] Length = 197 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 195 >gi|37960617|gb|AAP70678.1| small ribosomal protein 4 [Sphagnum teres] Length = 195 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 131 TIKDQQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|146261573|gb|ABQ15096.1| ribosomal protein S4 [Liquidambar styraciflua] Length = 167 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEA 156 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L A Sbjct: 60 ILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRALVQNYLA 119 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 S E ++P +++++ + + + + + D + V ++ N LVVE+YSR Sbjct: 120 SSPRE-ELPNHLTLH----LFQYKGLVNQIIDSKW-VSLKINELLVVEYYSR 165 >gi|6002073|emb|CAA58945.1| ribosomal protein S4 [Potamogeton crispus] Length = 196 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 18/178 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GNDPKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLEASQLAERDVPEYISVN 171 NHRH+LVNGR VNI SYRCK D+I K Q+SK L + +++S + ++P++++V+ Sbjct: 112 NHRHILVNGRIVNIPSYRCKPRDIITTKDNQRSKALVQNYIDSS--SREELPQHLTVD 167 >gi|15145848|gb|AAK83542.1| rps4 [Tayloria rudolphiana] Length = 189 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRLKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|297522434|gb|ADI44666.1| small ribosomal protein 4 [Micromitrium tenerum] Length = 184 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ Sbjct: 82 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 142 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 182 >gi|293634005|gb|ADE60382.1| ribosomal protein subunit 4 [Notoligotrichum tapes] Length = 187 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNFLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|162415084|gb|ABX89116.1| ribosomal protein S4 [Syntrichia sinensis] Length = 189 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 87 SMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|12642226|gb|AAK00195.1| rps4 [Entosthodon laevis] gi|39546757|gb|AAR28105.1| small ribosomal protein 4 [Entosthodon laevis] gi|67035726|gb|AAY62794.1| small ribosomal protein subunit 4 [Entosthodon laevis] Length = 193 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 5/170 (2%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 26 NQSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLD 84 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I +K + K A + + Sbjct: 85 NIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPDDSITIKNRQKSQAIITKNI 144 Query: 158 QLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ N +I L + + LVVE+YSR Sbjct: 145 DFSQKSKVPNHLTFNSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 191 >gi|63078638|gb|AAY29405.1| ribosomal protein S4 [Tortella tortuosa] Length = 194 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKF 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|33413209|emb|CAD86771.1| ribosomal protein small subunit 4 [Distichium capillaceum] Length = 175 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 81/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ + +++ Sbjct: 78 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIEFSQKY 137 Query: 163 DVPEYISVN 171 VP +++ N Sbjct: 138 KVPNHLTFN 146 >gi|3098148|gb|AAC15522.1| small ribosomal protein 4 [Encalypta rhaptocarpa] Length = 199 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFISIKDRQKSQAIIIKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S + +I L + + LVVE+YSR Sbjct: 157 KVPNHLSFDSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|77019191|emb|CAH60201.1| chloroplast 30S ribosomal protein S4 [Grimmia orbicularis] Length = 173 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD + R Sbjct: 12 KISQYRIRLEEKQKLRFHYG-ITERQLLNYGRIARKAKGSTGQVLLQLLEMRLDNVSLRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 71 GMTPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 130 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 131 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 171 >gi|190361259|gb|ACE76934.1| ribosomal protein small subunit 4 [Trichomanes osmundoides] Length = 166 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD IV+R Sbjct: 14 KISQFGIRLEAKQRLRFNYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHRH+LVN VNI SYRCK D+I ++ + Sbjct: 73 GIAPTIPAARQLVNHRHILVNNHIVNIPSYRCKHNDLITLRSQ 115 >gi|116010525|emb|CAL37369.1| ribosomal protein S4 [Sabal minor] Length = 182 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 11/152 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPKS G L Q R K S + ++L KQK+ +YG ++E++ A +++ Sbjct: 18 RPKS-------GSDLKTQLRSGKRSQYRIRLEEKQKLHFHYG-LTERQLVRYVHIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVN 171 KQ+SK L AS E ++P++++++ Sbjct: 130 TTKDKQRSKALIQNYIASPPPE-ELPKHLTID 160 >gi|21914170|gb|AAM81307.1| ribosomal protein subunit 4 [Ptychostomum pallens] Length = 194 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQK- 150 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 151 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 192 >gi|12330516|gb|AAG52795.1| ribosomal protein 4 [Archidium alternifolium] Length = 189 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 5/156 (3%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R PTI Sbjct: 36 LEEKQKLRXHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPG 94 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISV 170 ARQ VNHRH+LVN VNI SYRCK D I +K + K + V++ +++ VP ++++ Sbjct: 95 ARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKYKVPNHLTL 154 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +I + + + + LVVE+YSR Sbjct: 155 NSLEKKGLINQIXN---NDSIGLKINELLVVEYYSR 187 >gi|63191861|gb|AAY34890.1| small ribosomal protein subunit 4 [Oxystegus tenuirostris] Length = 192 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 190 >gi|3914860|sp|O20273|RR4_PATFR RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292980|emb|CAA92546.1| ribosomal protein S4 [Patersonia fragilis] Length = 184 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 4/142 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A + +G T L+ L Sbjct: 22 GNDLKNQLRSVKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKVKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K + A Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITTKDKQRSKAL 140 Query: 153 V---LEASQLAERDVPEYISVN 171 + + +S + ++P +++++ Sbjct: 141 IQNYIASSTQPQEELPNHLTID 162 >gi|293634123|gb|ADE60441.1| ribosomal protein subunit 4 [Polytrichum hyperboreum] Length = 188 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|258651411|ref|YP_003200567.1| 30S ribosomal protein S4 [Nakamurella multipartita DSM 44233] gi|258554636|gb|ACV77578.1| ribosomal protein S4 [Nakamurella multipartita DSM 44233] Length = 201 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 23/206 (11%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RR+ +L G + R + PG HG+ R + Y QL+ KQK + YG + EK+ Sbjct: 10 KKSRRLKTDLVGGDMA-FERRPFPPGQHGRARTKEKEYL-TQLQEKQKARFTYG-VMEKQ 66 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 FR + EA G T L+ LESRLD +VYRA T ARQ V+H H VNG V+ Sbjct: 67 FRRYYAEAASRTGKTGDTLLQILESRLDNVVYRAGLARTRRHARQLVSHGHFEVNGVRVD 126 Query: 130 IGSYRCKEGDVIEV-KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 + SYR ++ D+I V KQ ++ L + ER P ++ V +P +L+ Sbjct: 127 VPSYRVEQYDLITVRKQSTESFPFELARATFGERTPPAWMKV-----------VPETLQI 175 Query: 189 VPY--PVIMQ------PNLVVEFYSR 206 + + PV Q L+VEFYS+ Sbjct: 176 IIHSLPVRAQIDSQITEQLIVEFYSK 201 >gi|157689530|gb|ABV65321.1| ribosomal protein S4 [Ochna mossambicensis] Length = 182 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 105/179 (58%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 10 GSDLRNQSRFGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLL 68 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 69 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAM 128 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S + ++P++++++ + + + + D + V ++ N LVVE+YSR Sbjct: 129 IQNYLDSS--PQEELPKHLTLH----TFQYKGLVNQIIDSRW-VGLKINELLVVEYYSR 180 >gi|11878072|gb|AAG40784.1| small ribosomal protein 4 [Sphagnum cuspidatum] gi|20531047|gb|AAM27348.1| ribosomal protein 4 [Sphagnum cuspidatum] Length = 192 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 9 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 68 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 127 Query: 142 EVKQKSKQLASV 153 +K + K A + Sbjct: 128 TIKDRQKSQAII 139 >gi|42718082|gb|AAS38463.1| rps4 [Tayloria acuminata] Length = 189 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRLKSQAIINKNIEFNQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|11878074|gb|AAG40785.1| small ribosomal protein 4 [Takakia sp. LSU-47] Length = 192 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 12/197 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G + K+P + Y ++ K S + ++L KQK++ ++G ++E++ Sbjct: 3 RRLGASPGLTNKTPQSKSGY---INQSTSNKKISQYRIRLEEKQKLRFHHG-VTERQLLK 58 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A R++G T + LE RLD +++R PTI ARQ VNHRH+LVN R+VNI S Sbjct: 59 YVRIARRAKGSTGQVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRTVNIPS 118 Query: 133 YRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 +RCK D I K + K A + ++ SQ +E +P ++++N +I + Sbjct: 119 FRCKPQDFITTKDRQKSQAVITKNMDCSQKSE--MPNHLTLNSSQKRGLVNQI---IDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|118577609|gb|ABL07170.1| small ribosomal protein 4 [Piper nigrum] Length = 176 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 11/175 (6%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 7 LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMR 65 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-- 151 LD I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I + Q+SK L Sbjct: 66 LDNILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITTRNEQRSKVLVQN 125 Query: 152 SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S+ AS ++P++++++ +I S K V + LVVE+YSR Sbjct: 126 SMDSASH---EELPKHLTLDSSQYKGVVNQIIDS-KWVGLKI--NELLVVEYYSR 174 >gi|157689460|gb|ABV65286.1| ribosomal protein S4 [Cupaniopsis anacardioides] Length = 196 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 24 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLL 82 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 83 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIIAARDDQKSRAL 142 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S E +P++++++ +I S K V + LVVE+YSR Sbjct: 143 IQNYLDSSHHEE--LPKHLTLHAFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 194 >gi|37548879|gb|AAO32708.1| ribosomal protein 4 [Polytrichastrum longisetum] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 92 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|17154715|emb|CAC83927.1| ribosomal protein S4 [Walleria mackenzii] Length = 174 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKERSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P++++++ Sbjct: 133 IQNYIASSPPE-ELPKHLTID 152 >gi|20531079|gb|AAM27361.1| ribosomal protein 4 [Diphyscium chiapense] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQNIIVKNMDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I L + + LVVE+YSR Sbjct: 152 KIPNHLTLDSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|293633975|gb|ADE60367.1| ribosomal protein subunit 4 [Dawsonia beccarii] Length = 182 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQNIIVKNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ NH +I L + + LVVE+YSR Sbjct: 140 KIPNHLIFNHLERKGLVNQI---LDRESIGLKINELLVVEYYSR 180 >gi|157689534|gb|ABV65323.1| ribosomal protein S4 [Parnassia palustris] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 15/180 (8%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ + Sbjct: 22 GNDLRTQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQILLQLI 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 81 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSS----LKDVPYPVIMQPNLVVEFYSR 206 S E ++P++++++ RI S LK + LVVE+YSR Sbjct: 141 IQNYLYSSTHE-ELPKHLTLHPIQYKGLVNRIIESQFIGLK-------INELLVVEYYSR 192 >gi|157689488|gb|ABV65300.1| ribosomal protein S4 [Hirtella bicornis] Length = 172 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 100/178 (56%), Gaps = 17/178 (9%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ +E R Sbjct: 3 LRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIAAKAKGSTGQVLLQLIEMR 61 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK + K A + Sbjct: 62 LDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITVKDEQKSRAMIQN 121 Query: 154 -LEASQLAERDVPEYIS---VNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 L++S A+ ++P++++ H +V + D + + + L VE+YSR Sbjct: 122 HLDSS--AQEELPKHLTFQPFQHKGLVNQII-------DSKWIGLKINELLXVEYYSR 170 >gi|17154479|emb|CAC83918.1| ribosomal protein S4 [Diplarrhena latifolia] Length = 182 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQVRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNSIASSPHE-ELPNHLTID 160 >gi|24473834|gb|AAL82761.1| small ribosomal subunit protein 4 [Plagiobryum wrightii] Length = 196 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQK- 152 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 153 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 194 >gi|63191779|gb|AAY34849.1| small ribosomal protein subunit 4 [Dawsonia superba] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|21914166|gb|AAM81305.1| ribosomal protein subunit 4 [Plagiobryum meesioides] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQK- 150 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 151 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 192 >gi|63078634|gb|AAY29403.1| ribosomal protein S4 [Tortella tortuosa] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKF 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|63078626|gb|AAY29399.1| ribosomal protein S4 [Tortella humilis] gi|63191875|gb|AAY34897.1| small ribosomal protein subunit 4 [Tortella humilis] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQIMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|37960583|gb|AAP70661.1| small ribosomal protein 4 [Sphagnum cuspidatum] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASV 153 +K + K A + Sbjct: 131 TIKDRQKSQAII 142 >gi|27227943|gb|AAN85769.1| ribosomal protein subunit 4 [Bryum gemmiferum] Length = 164 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 3 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 61 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 62 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 120 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 121 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 162 >gi|293633977|gb|ADE60368.1| ribosomal protein subunit 4 [Dawsonia superba] Length = 177 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 75 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQNIIVKNIDFSQKY 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ NH +I L + + LVVE+YSR Sbjct: 135 KIPNHLIFNHLERKGLVNQI---LDRESIGLKINELLVVEYYSR 175 >gi|218157221|gb|ACK58427.1| ribosomal protein subunit 4 [Notoligotrichum tapes] Length = 186 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNFLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|116010519|emb|CAL37366.1| ribosomal protein S4 [Ligustrum ovalifolium] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 107/188 (56%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ + R+ Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 RPKAGSDPRN-------QSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKS+ L + L++S ++P +++++ +I S K V + Sbjct: 130 MTKDEQKSRTLIQNSLDSS--PHEELPNHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 184 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 185 LVVEYYSR 192 >gi|37548881|gb|AAO32709.1| ribosomal protein 4 [Polytrichum brachymitrium] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGALPGLTNKTPQLKSGY---INQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VN Sbjct: 58 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVN 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 118 IPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESIGLKINELLVVEYYSR 192 >gi|7109205|gb|AAF36678.1| ribosomal protein 4 [Timmia megapolitana] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A +++ +++ Sbjct: 92 NMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKNRQKSQAIIMKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|21914162|gb|AAM81303.1| ribosomal protein subunit 4 [Plagiobryum cyclophyllum] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQK- 151 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 152 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 193 >gi|63191785|gb|AAY34852.1| small ribosomal protein subunit 4 [Bartramiopsis lescurii] Length = 185 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDQQKSQAIIAKNMNFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTLNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|63191697|gb|AAY34810.1| small ribosomal protein subunit 4 [Plagiobryum zierii] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A + + L + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQESQAVISKNLNLYQ-- 150 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 EY + NH + F++ + L + + LVVE+YSR Sbjct: 151 --EYKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 193 >gi|157689568|gb|ABV65340.1| ribosomal protein S4 [Swietenia macrophylla] Length = 193 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 80 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDDQKSRAL 139 Query: 151 A-SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S E +P++++++ +I S K V + LVVE+YSR Sbjct: 140 IPNYLDSSHPEE--LPKHLTLHAFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 191 >gi|59803297|gb|AAX07757.1| Rps4 [Greeneothallus gemmiparus] Length = 199 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 18/205 (8%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +RS G Q +K S + ++L KQK++ +YG ++ Sbjct: 5 RAKIIRRLGA-LPGLSYEMIGSRS---GYTNQLATNKKISQYRIRLEEKQKLRFHYG-LT 59 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN Sbjct: 60 ERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVNDN 119 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS- 184 +VNI SY CK DVI +K + + + + + L ER +P +++ + + +I Sbjct: 120 AVNIPSYNCKPQDVITIKDRRESQSVITKNINLFRERKIPNHLTFDSTRFCGSVNQIIDR 179 Query: 185 ---SLKDVPYPVIMQPNLVVEFYSR 206 SLK + LVVE+YSR Sbjct: 180 EWISLK-------INELLVVEYYSR 197 >gi|305672377|gb|ADM63612.1| ribosomal protein S4 [Valeriana officinalis] Length = 173 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 10/161 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G KSP+ S L Q K S + ++L KQK++ +YG ++E++ Sbjct: 4 RRLGALPGLTNKSPIKRSS----LRNQSSSVKKSQYRIRLEEKQKLRFHYG-LTERQLLK 58 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVNGR V+I S Sbjct: 59 YVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPS 118 Query: 133 YRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISV 170 YRCK D+I + + A + L++S +++P+++++ Sbjct: 119 YRCKPHDIITARDEQNSRALIQNSLDSS--PHKELPKHLTL 157 >gi|289599866|gb|ADD12884.1| ribosomal protein S4 [Davilla nitida] Length = 188 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 19 LRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 77 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNHRH+LVN R VNI SYRCK D+I VK + K A + Sbjct: 78 LDNILFRLGMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPRDIITVKDEHKSRALIQN 137 Query: 154 -LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 138 YLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 186 >gi|218157229|gb|ACK58431.1| ribosomal protein subunit 4 [Polytrichastrum formosum] gi|293633983|gb|ADE60371.1| ribosomal protein subunit 4 [Hebantia rigida] gi|293634129|gb|ADE60444.1| ribosomal protein subunit 4 [Polytrichum subpilosum] Length = 190 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|162415094|gb|ABX89121.1| ribosomal protein S4 [Barbula convoluta] Length = 189 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQLMITKNVEFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 147 KTPNHLTFNSLEKKGLVNQI---LAQESIGLKINELLVVEYYSR 187 >gi|157689548|gb|ABV65330.1| ribosomal protein S4 [Quillaja saponaria] Length = 197 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 25 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 83 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 84 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQKSRAL 143 Query: 153 V---LEASQLAERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + L++S ++P+++++ + +V + D + V ++ N LVVE+Y Sbjct: 144 IQNYLDSS--PREELPKHLTLPPFQYKGLVNQII-------DSKW-VGLKINELLVVEYY 193 Query: 205 SR 206 SR Sbjct: 194 SR 195 >gi|146261545|gb|ABQ15082.1| ribosomal protein S4 [Paeonia brownii] Length = 196 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 19/179 (10%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ +E R Sbjct: 27 LRNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLIEMR 85 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + + A + Sbjct: 86 LDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITAKDEKQSRALIQN 145 Query: 154 -LEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 L+ S AE +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 146 YLDLSPHAE--LPKHLTLHPFEYKGLVNQII-------DSKW-VSLQINELLVVEYYSR 194 >gi|37548847|gb|AAO32692.1| ribosomal protein 4 [Oligotrichum austroaligerum] Length = 196 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 94 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|7576775|gb|AAF63984.1| small ribosomal protein 4 [Polytrichum commune] gi|37548883|gb|AAO32710.1| ribosomal protein 4 [Polytrichum juniperinum] gi|293634125|gb|ADE60442.1| ribosomal protein subunit 4 [Polytrichum strictum] Length = 192 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|11466704|ref|NP_039300.1| ribosomal protein S4 [Marchantia polymorpha] gi|133956|sp|P06358|RR4_MARPO RecName: Full=30S ribosomal protein S4, chloroplastic gi|11674|emb|CAA28086.1| rps4 [Marchantia polymorpha] gi|222103416|gb|ACM44237.1| small ribosomal protein subunit 4 [Marchantia polymorpha] Length = 202 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMK 59 MS+ + KI RR+G P T G Q +K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG----ALPGLTNKTLKLKSGYINQSTSNKKVSQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVAT 178 H+L+N +V+I SY CK DVI +K +SK + +++ + ++ +P +++ + + Sbjct: 116 HILINNNTVDIPSYNCKPKDVITIKDRSKSQSIIIKNLNSFQKQKIPNHLTFDLMQIKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I ++ Y I + LVVE+YSR Sbjct: 176 VNQIID--REWIYLKINEL-LVVEYYSR 200 >gi|305672247|gb|ADM63547.1| ribosomal protein S4 [Brunia laevis] Length = 173 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A Sbjct: 79 EMRLDNVLFRLGMAPTIPGARQLVNHRHILVNGRLVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|7576759|gb|AAF63976.1| small ribosomal protein 4 [Dendroligotrichum dendroides] Length = 190 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|63191775|gb|AAY34847.1| small ribosomal protein subunit 4 [Oligotrichum parallelum] Length = 194 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 92 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDQQESQAIIARNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|42794654|gb|AAS45724.1| Rps4 [Disterigma rimbachii] Length = 211 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQXKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNG ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGHIIDIPSYRCKPRDIITAREKSRALIHNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|32892112|gb|AAP88995.1| ribosomal protein S4 [Passiflora mansoi] Length = 183 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 16/186 (8%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK GD+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPGDLITV 120 Query: 144 K--QKSKQLA-SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 K QKSK + + L++ + A+ +P++++++ + +I S K V + LV Sbjct: 121 KDEQKSKDMIKNSLDSFRQAQ--LPKHLTLHRSQYKGSVNKIIDS-KWVGLEI--NELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|28194703|gb|AAO33613.1|AF480968_1 ribosomal protein S4 [Gymnostomum viridulum] Length = 196 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSEIMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|20531085|gb|AAM27364.1| ribosomal protein 4 [Diphyscium suzukii] Length = 193 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I L + + LVVE+YSR Sbjct: 151 KIPNHLTLDSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 191 >gi|69216112|gb|AAZ03894.1| ribosomal protein S4 [Yucca schidigera] Length = 201 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPRS-------GSDLKNPLRSVKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHE-ELPNHLTIDSFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 YKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|63191793|gb|AAY34856.1| small ribosomal protein subunit 4 [Takakia ceratophylla] Length = 188 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y ++L KQK++ ++G I+E++ + A R++ Sbjct: 5 PGLTNKTPQSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHHG-ITERQLLKYVRIARRAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD +++R PTI ARQ VNHRH+LVN R+VNI S+RCK D I Sbjct: 64 GSTGQVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRTVNIPSFRCKPQDFI 123 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + +++ +P ++++N +I + + + LV Sbjct: 124 TIKDRQKSQAIITKNMDCSQKSKIPNHLTLNSSQKRGLVNQI---IDRESIGLKINELLV 180 Query: 201 VEFYSR 206 VE+YSR Sbjct: 181 VEYYSR 186 >gi|26399192|sp|Q9M4C2|RR4_RICNA RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017981|emb|CAB92155.1| small ribosomal protein 4 [Ricciocarpos natans] Length = 202 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 36/221 (16%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSKP Y + Sbjct: 1 MSRYRGPRVKIIRRLGA---------------LPGLTNKTLKSKPGYINQSTSNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEY 167 I ARQ VNHRH+L+N +V+I SY CK DVI +K + K + + + + ++ +P + Sbjct: 105 IPGARQLVNHRHILINNSTVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKQKIPNH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++ + + + + + D + + ++ N LVVE+YSR Sbjct: 165 LTFD----LMQVKGLVNQIIDREW-IFLKINELLVVEYYSR 200 >gi|74273103|gb|ABA01251.1| ribosomal protein S4 [Passiflora ceratocarpa] Length = 183 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK GD+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPGDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P++++++ + +I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFRQEQLPKHLTLHRSQYKGSVNKIIDS-KWVGLEI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|297179941|gb|ADI23950.1| small ribosomal protein 4 [Leucobryum sp. Vanderpoorten s.n.] Length = 197 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 155 KVPNHLTFNSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 195 >gi|218157231|gb|ACK58432.1| ribosomal protein subunit 4 [Polytrichum juniperinum] gi|293633981|gb|ADE60370.1| ribosomal protein subunit 4 [Dendroligotrichum squamosum] gi|293634111|gb|ADE60435.1| ribosomal protein subunit 4 [Polytrichastrum tenellum] gi|293634115|gb|ADE60437.1| ribosomal protein subunit 4 [Polytrichastrum xanthopilum] Length = 187 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|7576761|gb|AAF63977.1| small ribosomal protein 4 [Itatiella ulei] Length = 193 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 91 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 191 >gi|67035648|gb|AAY62755.1| small ribosomal protein subunit 4 [Venturiella sinensis] Length = 199 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V+H+H+LVN R VNI SYRCK D I +K + K +L+ +++ Sbjct: 97 GMAPTIPGARQLVSHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSQVIILKNVDFSQKF 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGIVNQI---LDQESVGLKINELLVVEYYSR 197 >gi|293634121|gb|ADE60440.1| ribosomal protein subunit 4 [Polytrichum ericoides] Length = 185 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|293634087|gb|ADE60423.1| ribosomal protein subunit 4 [Polytrichastrum longisetum] Length = 188 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|157689472|gb|ABV65292.1| ribosomal protein S4 [Eucryphia lucida] Length = 193 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKCVRIAGKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L Sbjct: 80 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAL 139 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + Y+ S H+ + P K + +I + LVV Sbjct: 140 -------------IQNYLDSSAHEELSKHLTLHPVQYKGLVNQIIDSKWVGLKINELLVV 186 Query: 202 EFYSR 206 E+YSR Sbjct: 187 EYYSR 191 >gi|12330466|gb|AAG52770.1| ribosomal protein 4 [Dendroligotrichum dendroides] gi|218157215|gb|ACK58424.1| ribosomal protein subunit 4 [Dendroligotrichum dendroides] gi|293634021|gb|ADE60390.1| ribosomal protein subunit 4 [Oligotrichum suzukii] gi|293634083|gb|ADE60421.1| ribosomal protein subunit 4 [Polytrichastrum appalachianum] gi|293634119|gb|ADE60439.1| ribosomal protein subunit 4 [Polytrichum commune] Length = 189 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|67035652|gb|AAY62757.1| small ribosomal protein subunit 4 [Hypnodontopsis spathulatus] Length = 202 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 100 GLAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDSITIKDRQKSQTMIIKNLDFSQKT 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 160 KVPNHLTFNFLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 200 >gi|190361227|gb|ACE76918.1| ribosomal protein small subunit 4 [Polyphlebium angustatum] Length = 173 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 9/136 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L+AKQK++ YG +E++ + A R++G T L+ LE RLDTIVY+ Sbjct: 24 KISQFCVRLQAKQKLRFNYGS-TERQLLKYVRIARRAKGSTGQVLLQLLEMRLDTIVYQL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS------KQLASVLEAS 157 PTI +ARQ VNHRH+LVN V+I SYRCK D+I +K +S + +L S Sbjct: 83 GMAPTIPSARQLVNHRHILVNNHIVDIPSYRCKPKDLITLKSRSSLSYKEQSTLKLLYTS 142 Query: 158 QLAERDVPEYISVNHD 173 +R P++++V+ D Sbjct: 143 WTKKR--PDHLTVSSD 156 >gi|157689520|gb|ABV65316.1| ribosomal protein S4 [Melianthus comosus] Length = 193 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 80 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITPRDEPKSRAL 139 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + L +S ++P+Y++++ P K + +I + LVV Sbjct: 140 IQNYLHSS--THEELPKYLTLH-----------PFQYKGLVNQIIDSNWVGLKINELLVV 186 Query: 202 EFYSR 206 E+YSR Sbjct: 187 EYYSR 191 >gi|121761724|gb|ABM64949.1| ribosomal protein S4 [Plagiomnium medium] gi|121761738|gb|ABM64956.1| ribosomal protein S4 [Plagiomnium medium] gi|121761752|gb|ABM64963.1| ribosomal protein S4 [Plagiomnium medium] gi|121761781|gb|ABM64977.1| ribosomal protein S4 [Plagiomnium medium] gi|121761787|gb|ABM64980.1| ribosomal protein S4 [Plagiomnium medium] Length = 195 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|293634127|gb|ADE60443.1| ribosomal protein subunit 4 [Polytrichum strictum] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|293634117|gb|ADE60438.1| ribosomal protein subunit 4 [Polytrichum commune] Length = 184 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 82 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 182 >gi|42556450|gb|AAS19820.1| small ribosomal protein 4 [Lepidolaena taylorii] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL ++ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKKLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+L+N +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHRHILINNETVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVL-EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + + + ++P ++S+N + + I +++ + + LV Sbjct: 127 TIRNREKSQSIITRNMNSFHKSEIPNHLSLNSTQLRGS---INTTIHREWIDLKVNELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|37548877|gb|AAO32707.1| ribosomal protein 4 [Polytrichastrum formosum] Length = 192 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|67035674|gb|AAY62768.1| small ribosomal protein subunit 4 [Dicranodontium meridionale] Length = 199 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K V + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVTKNIEFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 197 >gi|118577583|gb|ABL07157.1| small ribosomal protein 4 [Piper hispidum] Length = 169 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 3 QPRSWKRSQYRIRLEEKQKLRFHYG-LTERQLIRYVRIAGKAKGSTGRVLLQLLEMRLDN 61 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I + + + V + Sbjct: 62 ILFRLGMASTIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITTRNEQRSKVLVQNSMD 121 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A R ++P++++++ +I S K V + LVVE+YSR Sbjct: 122 SASREELPKHLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLVVEYYSR 167 >gi|37548841|gb|AAO32689.1| ribosomal protein 4 [Dendroligotrichum squamosum] gi|37548843|gb|AAO32690.1| ribosomal protein 4 [Hebantia rigida] gi|293634113|gb|ADE60436.1| ribosomal protein subunit 4 [Polytrichastrum torquatum] Length = 186 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|63191815|gb|AAY34867.1| small ribosomal protein subunit 4 [Pseudocrossidium aureum] Length = 199 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIMITKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 197 >gi|118577542|gb|ABL07137.1| small ribosomal protein 4 [Peperomia galioides] Length = 186 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 9/184 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 9 KRPVSESS----LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 63 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + Sbjct: 64 TGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITM 123 Query: 144 KQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + K V + A R ++P++++++ +I S K V + LVVE Sbjct: 124 RNAQKSKVLVQNSMDSASREELPKHLTLDSSQYKGIVNQIIDS-KWVGLKI--NELLVVE 180 Query: 203 FYSR 206 +YSR Sbjct: 181 YYSR 184 >gi|9651819|gb|AAF91286.1|AF234158_1 ribosomal protein subunit 4 [Dicranum scoparium] Length = 199 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++ R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|63191865|gb|AAY34892.1| small ribosomal protein subunit 4 [Tetrapterum recurvirostre] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S + + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI-SDQESIGLKI--NELLVVEYYSR 189 >gi|222103558|gb|ACM44308.1| small ribosomal protein subunit 4 [Oxystegus tenuirostris] Length = 203 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 101 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 160 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 161 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 201 >gi|146261579|gb|ABQ15099.1| ribosomal protein S4 [Peridiscus lucidus] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 19 GSDLRKQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 77 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 78 EMRLDNILFRLGMALTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDDQKSRAL 137 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 138 IQNYLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVNLKI--NELLVVEYYSR 189 >gi|42794728|gb|AAS45759.1| Rps4 [Thibaudia parvifolia] Length = 211 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 11/170 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 42 KKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEA 156 TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + Sbjct: 101 GMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPS 160 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + VP ++ +N +I ++ K V + + LVVE+YSR Sbjct: 161 RKGKRKRVPYHLXLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|305672379|gb|ADM63613.1| ribosomal protein S4 [Campanula trachelium] Length = 171 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + +L KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 28 KKSLYCSRLEEKQKLRFHYG-LTERQLLKYVRLAARAKGPTGQVLLQLLEMRLDNILFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAER 162 PTI ARQ VNHRH+LVNGR V+I SYRCK D I K K A + + L ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNGRLVDIPSYRCKPRDTITAKDKQTSKALIQNSLDSLPQK 146 Query: 163 DVPEYISV 170 +P ++++ Sbjct: 147 KLPPHLTL 154 >gi|293634015|gb|ADE60387.1| ribosomal protein subunit 4 [Oligotrichum canaliculatum] Length = 189 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|293633985|gb|ADE60372.1| ribosomal protein subunit 4 [Itatiella ulei] gi|293633987|gb|ADE60373.1| ribosomal protein subunit 4 [Itatiella ulei] gi|293634019|gb|ADE60389.1| ribosomal protein subunit 4 [Oligotrichum riedelianum] Length = 186 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|63145902|gb|AAY33889.1| small ribosomal protein 4 [Jensenia decipiens] Length = 202 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G L G + +RS Y L + K S + ++L KQK++ Sbjct: 1 MSRYRGPRAKIIRRLGA-LPGLSHKMLGSRSGYTNQLTANK---KISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVAT 178 H+L+N VNI SY CK DVI +K + + + + + + L E+ +P +++ + + Sbjct: 116 HILINDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGS 175 Query: 179 FVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +I SLK + LVVE+YSR Sbjct: 176 VNQIIDREWISLK-------INELLVVEYYSR 200 >gi|12330528|gb|AAG52801.1| ribosomal protein 4 [Fissidens bushii] Length = 189 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R+ Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLETRPDNIIFRS 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 87 GMTPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDQQKYQVMIIKNINFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ N +I L + + LVVE+YSR Sbjct: 147 EIPNHLTFNSLEKKGLVKQI---LDQESIGLKINELLVVEYYSR 187 >gi|11228635|gb|AAG33103.1| small ribosomal protein 4 [Dicranum muehlenbeckii] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++ R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|157689414|gb|ABV65263.1| ribosomal protein S4 [Aphloia theiformis] Length = 185 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 23/184 (12%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 13 GSDLRNQSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 71 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD ++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + QKS+ L Sbjct: 72 EMRLDNTLFRLGMASTIPQARQLVNHRHILVNGHIVDIPSYRCKPRDIITARDAQKSRAL 131 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVE 202 S L E ++P++++++ PS K + +I + L+VE Sbjct: 132 IQNYLDSSLHE-ELPKHLTLH-----------PSQYKGLVNQIIDSKWIGLKINELLIVE 179 Query: 203 FYSR 206 +YSR Sbjct: 180 YYSR 183 >gi|305672343|gb|ADM63595.1| ribosomal protein S4 [Roussea simplex] Length = 173 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD Sbjct: 26 QSRSEKKSQYRIRLEEKQKLRFHYG-LTERQLLNYVRIAGKAKGPTGQVLLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + K A V L+ Sbjct: 85 ILFRLGMAPTIPGARQLVNHRHILVNGRLVDIPSYRCKPQDTIMARDEQKSRALVQKSLD 144 Query: 156 ASQLAERDVPEYISVN 171 +S ++P +++++ Sbjct: 145 SS--PHEELPNHLTLH 158 >gi|162415104|gb|ABX89126.1| ribosomal protein S4 [Syntrichia norvegica] Length = 188 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 86 SMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|121761722|gb|ABM64948.1| ribosomal protein S4 [Mnium spinulosum] Length = 195 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 193 >gi|83416500|gb|ABC18270.1| small ribosomal subunit protein 4 [Dicranum scoparium] Length = 196 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++ R Sbjct: 35 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|26421809|gb|AAN78163.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ N +I P + ++ N LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQILD-----PESIGLKINELLVVEYYSR 193 >gi|24473846|gb|AAL82767.1| small ribosomal subunit protein 4 [Bryum gemmiparum] Length = 197 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 5 RIIRRLGALQGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 59 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 60 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 119 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 120 NIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK----YKTPNH--LTYNFLKKKGLVNQ 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 ILDRESIGLKINELLVVEYYSR 195 >gi|293633979|gb|ADE60369.1| ribosomal protein subunit 4 [Dendroligotrichum microdendron] Length = 183 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 81 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 181 >gi|37548887|gb|AAO32712.1| ribosomal protein 4 [Polytrichum subpilosum] Length = 194 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGAFPGLTNKTPQLKSGY---INQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VN Sbjct: 58 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVN 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 118 IPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESIGLKINELLVVEYYSR 192 >gi|33413191|emb|CAD86731.1| ribosomal protein small subunit 4 [Dicranum acutifolium] Length = 190 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++ R Sbjct: 29 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|305672335|gb|ADM63591.1| ribosomal protein S4 [Platysace lanceolata] Length = 173 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRSQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNG V+I SYRCK D+I K + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITAKDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSLDSSSHDELPKHLTLH 158 >gi|37960611|gb|AAP70675.1| small ribosomal protein 4 [Sphagnum strictum] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 8 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 67 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 126 Query: 142 EVKQKSKQLASV 153 +K + K A + Sbjct: 127 TIKDRQKSQAII 138 >gi|21914140|gb|AAM81292.1| ribosomal protein subunit 4 [Acidodontium heteroneuron] Length = 197 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKNRQKSQAIISKNLNLYQK- 153 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 154 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 195 >gi|11121224|emb|CAC14788.1| ribosomal protein subunit 4 [Leucolepis menziesii] gi|63191708|gb|AAY34815.1| small ribosomal protein subunit 4 [Leucolepis acanthoneura] Length = 198 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 196 >gi|330850892|ref|YP_004376642.1| 30S ribosomal protein S4 [Fistulifera sp. JPCC DA0580] gi|328835712|dbj|BAK19008.1| 30S ribosomal protein S4 [Fistulifera sp. JPCC DA0580] Length = 205 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 22/216 (10%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKS---KPSYFGLQLRAK 55 MS+ K KI RR+G L + + +N PG G K + +G++L K Sbjct: 1 MSRYRGPKLKITRRLGTLPGLTTKKSNKINR----PGKDGNANADTGKKLTEYGVRLEEK 56 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+K YG +SE + KEA R +G T L+ LE RLDT+ + F T+ ARQ Sbjct: 57 QKLKFNYG-LSESQLFRYVKEARRRQGVTGLILLQLLEMRLDTLCFTLGFAKTMAQARQL 115 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNH 172 VNH H+ VN + VNI S++C+ D+I VK+++ + VL + L +R +P ++ + Sbjct: 116 VNHGHITVNKKVVNIPSFQCRLNDIISVKEQTS--SKVLVENNLKDRQSNTIPAHLKFDQ 173 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + AT + +D VI+Q + LV+E YSR Sbjct: 174 NKLEATVMDYCD--RD---DVILQLDELLVIEHYSR 204 >gi|7576755|gb|AAF63974.1| small ribosomal protein 4 [Bartramiopsis lescurii] Length = 182 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEKKQKLRFHYG-ITERQLLKYVRIARGAKGSTGXILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + ++ + + Sbjct: 80 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDQQKSQAIIAKNNEFSHKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTLNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 180 >gi|67035734|gb|AAY62798.1| small ribosomal protein subunit 4 [Bryobartramia novae-valesiae] Length = 188 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFISIKNRQKSQAIIIKNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S + +I L + + LVVE+YSR Sbjct: 146 KVPNHLSFDSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|305672243|gb|ADM63545.1| ribosomal protein S4 [Cyphia decora] Length = 173 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 12/147 (8%) Query: 26 PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTS 85 P N YG K S + L+L KQK++ +YG ++E++ + A +++G T Sbjct: 23 PRNQSGYG----------KKSQYRLRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTG 71 Query: 86 HNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 L+ LE RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I K Sbjct: 72 QVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITAKD 131 Query: 146 KSKQLASVLEA-SQLAERDVPEYISVN 171 + K A + + ++P++++++ Sbjct: 132 EQKSKALIQNSLDSFPHEELPKHLTLD 158 >gi|162415098|gb|ABX89123.1| ribosomal protein S4 [Didymodon perobtusus] Length = 189 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVIITKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|6002077|emb|CAA58948.1| ribosomal protein S4 [Sagittaria sagittifolia] Length = 196 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E +P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKTLVQNSIASSSHE-GLPKHLTLD 167 >gi|293611988|gb|ADE48438.1| ribosomal protein 4 [Dioon rzedowskii] Length = 174 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 13 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 72 GMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIEKNLDLSQKD 131 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 132 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 172 >gi|21914146|gb|AAM81295.1| ribosomal protein subunit 4 [Anomobryum conicum] Length = 198 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPEDSITIKDRPKSQAIISKNLNLYQKY 155 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N + +V + R LK + LVVE+YSR Sbjct: 156 KTPNHLTYNFLKKNGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|14090474|gb|AAK53522.1| small ribosomal protein 4 [Fissidens mooreae] Length = 182 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKARQKSQVMIIKNVNFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|67035682|gb|AAY62772.1| small ribosomal protein subunit 4 [Leucobryum crispum] Length = 197 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + + LVVE+YSR Sbjct: 155 KVPNHLTFDSLEKKGLVNQI---LNNESIGLKINELLVVEYYSR 195 >gi|257440241|ref|ZP_05615996.1| ribosomal protein S4 [Faecalibacterium prausnitzii A2-165] gi|257197275|gb|EEU95559.1| ribosomal protein S4 [Faecalibacterium prausnitzii A2-165] Length = 200 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 7/172 (4%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 +G RK K S + QL+ KQK+K YG + EK+F + + A+ G T NL+ +E RL Sbjct: 34 NGNVRK-KQSEYASQLKEKQKVKFIYG-VLEKQFHNAYLRAEARPGKTGENLLQIMECRL 91 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA--SVL 154 D +V+R F T ARQ V+H H VNG+ VNI SY+ K GDVIEV++ S+ A + L Sbjct: 92 DNVVFRLGFAQTRRDARQLVSHAHFTVNGKKVNIPSYQVKAGDVIEVRESSRSSAKFAKL 151 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ + ++P D+ Y V +L+VE YS+ Sbjct: 152 VGPEAPVVALPSWLNREAGTLKGVVTKLPER-SDIDYEV--AEHLIVELYSK 200 >gi|157689470|gb|ABV65291.1| ribosomal protein S4 [Elatine triandra] Length = 183 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 14 LRNQSRPGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMR 72 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ +NHRH+LVNGR V+I SYRCK D+I + + K A + Sbjct: 73 LDNILFRLGMASTIPQARQLINHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAMIQN 132 Query: 154 -LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S ++++P++++++ +I S K V + LVVE+YSR Sbjct: 133 YLDSS--PQKELPKHLTLHPLQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 181 >gi|149390356|ref|YP_001294354.1| ribosomal protein S4 [Dioscorea elephantipes] gi|172048696|sp|A6MMK9|RR4_DIOEL RecName: Full=30S ribosomal protein S4, chloroplastic gi|148668048|gb|ABR01432.1| ribosomal protein S4 [Dioscorea elephantipes] Length = 201 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 116/216 (53%), Gaps = 27/216 (12%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDFKNQSRFGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTEQQLLRYVHIAGKAKGSTDQVLLQLLEMRLDNILFRLGMASTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVN-- 171 NHRH+LVNGR V+I SYRCK D+I K K + + + +E+S ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITSKDKQRSKVLIQNSIESS--PHEELPKHLTIDSF 169 Query: 172 -HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +V I S L + + LVVE+YSR Sbjct: 170 QYKGLVNQI--IDSKLIGLK----INELLVVEYYSR 199 >gi|21914180|gb|AAM81312.1| ribosomal protein subunit 4 [Haplodontium megalocarpum] Length = 196 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRMVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQK- 152 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH N++ + L + + LVVE+YSR Sbjct: 153 ---YKTPNHLTYNVLKKKGLVNQILDRESIGLKINELLVVEYYSR 194 >gi|21914164|gb|AAM81304.1| ribosomal protein subunit 4 [Plagiobryum lisae] gi|21914168|gb|AAM81306.1| ribosomal protein subunit 4 [Bryum pachytheca] gi|25986603|gb|AAL92524.1| small ribosomal subunit protein 4 [Bryum ruderale] gi|25986605|gb|AAL92525.1| small ribosomal subunit protein 4 [Bryum radiculosum] gi|27227937|gb|AAN85766.1| ribosomal protein subunit 4 [Bryum kikuyuense] gi|27227941|gb|AAN85768.1| ribosomal protein subunit 4 [Bryum clavatum] Length = 197 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 153 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 154 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 195 >gi|21914152|gb|AAM81298.1| ribosomal protein subunit 4 [Bryum arachnoideum] gi|21914160|gb|AAM81302.1| ribosomal protein subunit 4 [Bryum cyathiphyllum] Length = 197 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 153 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 154 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 195 >gi|67035646|gb|AAY62754.1| small ribosomal protein subunit 4 [Aulacopilum hodgkinsoniae] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVN R VNI SYRCK D+I +K + K +L+ +++ Sbjct: 89 GMALTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDLITIKNRQKSQGIILKNVDFSQKF 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGIVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|63191847|gb|AAY34883.1| small ribosomal protein subunit 4 [Gymnostomum aeruginosum] Length = 191 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|293611958|gb|ADE48423.1| ribosomal protein 4 [Bowenia spectabilis] Length = 182 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD ++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLQYVRIAGRAKGSTGQVLLQLLEMRLDNTIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 80 GMASTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIEKNLDLSQKD 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 140 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 180 >gi|14090458|gb|AAK53514.1| small ribosomal protein 4 [Leucophanes glaucum] Length = 182 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A R +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYIRIARRVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K +++ + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYHCKPQDFITIKDQQKYQTMIVKNTSF---- 135 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 136 FPKYKTPNHLIFNSVEKKGLVNQLLDQESIGLKINELLVVEYYSR 180 >gi|7109197|gb|AAF36674.1| ribosomal protein 4 [Uleastrum paraguense] gi|67035650|gb|AAY62756.1| small ribosomal protein subunit 4 [Uleastrum paraguense] Length = 189 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEXKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKDRQKSQTMIIKNLDFSQKI 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 147 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|305672263|gb|ADM63555.1| ribosomal protein S4 [Triplostegia glandulifera] Length = 174 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 GL Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE Sbjct: 22 GLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEM 80 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 RLD I++R PTI ARQ VNHRH+LVNG V+I SYRCK D+I + + A + Sbjct: 81 RLDNILFRLGMAPTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITARDEQNSRALI 139 >gi|21914182|gb|AAM81313.1| ribosomal protein subunit 4 [Bryum caucasicum] Length = 198 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 154 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 155 ---YKTPNH--LTYNFLKNKGLVNQILDRESIGLKINELLVVEYYSR 196 >gi|3098168|gb|AAC15532.1| small ribosomal protein 4 [Bryum stenotrichum] Length = 190 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 146 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 147 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 188 >gi|305672257|gb|ADM63552.1| ribosomal protein S4 [Heptacodium miconioides] Length = 173 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 2/137 (1%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 GL Q K S + ++L KQK++ +YG ++E++ + A +S+G T L+ LE Sbjct: 22 GLRNQSHSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKSKGSTGQVLLQLLEM 80 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + Sbjct: 81 RLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIIMARDEQNSRALIQ 140 Query: 155 EASQLAER-DVPEYISV 170 + + R +P ++++ Sbjct: 141 NSLNSSRRKKLPNHLTL 157 >gi|293634013|gb|ADE60386.1| ribosomal protein subunit 4 [Oligotrichum canaliculatum] Length = 180 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 78 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 178 >gi|49182704|gb|AAT57814.1| small ribosomal protein [Fossombronia pusilla] Length = 194 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 33 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 92 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQK- 150 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + T +R I ++ + + LVVE+YSR Sbjct: 151 -PK--TPNHLTLDLTRLRGSINQTIDRDWIDLKINELLVVEYYSR 192 >gi|37548829|gb|AAO32683.1| ribosomal protein 4 [Buxbaumia piperi] Length = 187 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARAAKGSTGQILLQSLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + + +L++R Sbjct: 85 GIAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKNSQKSQTIITKNIELSQRY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTLNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|27227933|gb|AAN85764.1| ribosomal protein subunit 4 [Anomobryum humillimum] Length = 186 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKNRKKSQAIISKNLNLYQK- 142 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 143 ---YKTPNH--LTYNFLKKKGLVNQILXRESIGLKINELLVVEYYSR 184 >gi|27227935|gb|AAN85765.1| ribosomal protein subunit 4 [Anomobryum prostratum] Length = 199 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKNRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|63191831|gb|AAY34875.1| small ribosomal protein subunit 4 [Chenia leptophylla] Length = 183 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 140 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLEKKGLINQI---LDQESIGLEINELLVVEYYSR 181 >gi|63078568|gb|AAY29371.1| ribosomal protein S4 [Chionoloma bombayense] Length = 192 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R +NI SYRCK D I +K + K + + +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNNRIINIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 190 >gi|14090486|gb|AAK53528.1| small ribosomal protein 4 [Timmiella crassinervis] Length = 182 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEENQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAMITKNVDFFQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 180 >gi|24473850|gb|AAL82769.1| small ribosomal subunit protein 4 [Brachymenium nepalense] Length = 196 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 152 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 153 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 194 >gi|305672245|gb|ADM63546.1| ribosomal protein S4 [Valerianella locusta] Length = 173 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 10/161 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G KSP+ S L Q K S + ++L KQK++ +YG ++E++ Sbjct: 4 RRLGALPGLTNKSPIKRSS----LRNQSSSVKKSQYRIRLEEKQKLRFHYG-LTERQLLK 58 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVNGR V+I S Sbjct: 59 YVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPS 118 Query: 133 YRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISV 170 YRCK D+I + + A + L++S +++P+++++ Sbjct: 119 YRCKPRDIITARDEQNSRALIQNSLDSS--PHKELPKHLTL 157 >gi|293634017|gb|ADE60388.1| ribosomal protein subunit 4 [Oligotrichum obtusatum] Length = 178 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 17 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 76 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 135 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 136 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 176 >gi|12642210|gb|AAK00187.1| rps4 [Timmia austriaca] Length = 195 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A +++ +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKNRQKSQAIIMKNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 153 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|63191851|gb|AAY34885.1| small ribosomal protein subunit 4 [Tuerckheimia valeriana] Length = 199 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVYFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|170516225|gb|ACB15114.1| small ribosomal protein 4 [Ceratozamia miqueliana] Length = 194 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 12 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 70 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRC DVI Sbjct: 71 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCNPRDVIT 130 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 131 VRDQQRSRAMIDKNLDLSQKDQMPNHLTLHSSRYKGLVHQIIDS-KWISLKI--NELLVV 187 Query: 202 EFYSR 206 E+YSR Sbjct: 188 EYYSR 192 >gi|110227081|ref|YP_665560.1| ribosomal protein S4 [Populus alba] gi|134093201|ref|YP_001109503.1| ribosomal protein S4 [Populus trichocarpa] gi|122224628|sp|Q14FF5|RR4_POPAL RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060558|sp|A4GYR2|RR4_POPTR RecName: Full=30S ribosomal protein S4, chloroplastic gi|109945519|dbj|BAE97207.1| ribosomal protein S4 [Populus alba] gi|133712063|gb|ABO36706.1| ribosomal protein S4 [Populus trichocarpa] Length = 201 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 25/215 (11%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRAGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRVMIQNSLDSFPQEELPKHLTLH-------- 167 Query: 180 VRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 P K + +I + LVVE+YSR Sbjct: 168 ---PFQYKGLVNHIIDSKWIGLKINELLVVEYYSR 199 >gi|22854719|gb|AAN09779.1| small ribosomal protein 4 [Leucobryum albidum] Length = 186 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 144 KVPNHLTFNSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 184 >gi|11228629|gb|AAG33100.1| small ribosomal protein 4 [Dicranodontium denudatum] Length = 191 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +A +E SQ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIEFSQ-- 146 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 147 KYKVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 189 >gi|11466958|ref|NP_054379.1| ribosomal protein S4 [Epifagus virginiana] gi|266975|sp|P30056|RR4_EPIVI RecName: Full=Plastid 30S ribosomal protein S4 gi|336927|gb|AAA65853.1| ribosomal protein S4 [Epifagus virginiana] Length = 202 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ YG + E++ R F A ++RG Sbjct: 19 PGLTNKRSKAENDFIKKLRSDKKSQYRIRLEEKQKLRFNYG-LRERQLRKYFSIAIKTRG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI- 141 T L+ LE RLD I++R TI AARQ VNHRHVLVNGR V+I SYRCK D+I Sbjct: 78 STGKVLMQLLEMRLDNIIFRLGMASTIPAARQLVNHRHVLVNGRIVDIPSYRCKSRDIIM 137 Query: 142 --EVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPN 198 + +Q + + + + S + P NH ++ F + + + D + + Sbjct: 138 ARDEQQSNTFINNCINYSTHNRMEAP-----NHLTLLHPFKGLVNQIIDSKWVGFKINEL 192 Query: 199 LVVEFYSR 206 LVVE+Y R Sbjct: 193 LVVEYYFR 200 >gi|325973258|ref|YP_004250322.1| 30S ribosomal protein S4 [Mycoplasma suis str. Illinois] gi|325989693|ref|YP_004249392.1| 30S ribosomal protein S4 [Mycoplasma suis KI3806] gi|323574778|emb|CBZ40438.1| 30S ribosomal protein S4 [Mycoplasma suis] gi|323651860|gb|ADX97942.1| 30S ribosomal protein S4 [Mycoplasma suis str. Illinois] Length = 202 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 3/155 (1%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ +K R+ G + + GR S R YGPG HG + K S G QLR KQK+ Sbjct: 1 MSRYLGPLYKKSRQHGFSFYEDGREFSKGKQREYGPGQHGPTKFKKLSLHGEQLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG + EK+ R FK A + G + N + LES+LD +V+RA T AARQ + H Sbjct: 61 AILYG-LREKQMRRFFKMAQKMPGSLALNFLILLESKLDNLVFRAGMANTRRAARQLIVH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 H+ +NG+ V+I SY VIEV +KS+ + V Sbjct: 120 GHIRLNGKKVDIPSYVVPPSSVIEVAEKSRDIPVV 154 >gi|157689424|gb|ABV65268.1| ribosomal protein S4 [Bixa orellana] Length = 192 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRPGKKSQYRIRLEEKQKLRFHYG-LAERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIICARDEKKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S ++P++++++ + + + + D + V ++ N LVVE+YSR Sbjct: 139 IQNYLDSS--TPEELPKHLTLH----TLQYKGLVNQIIDRKW-VGLKINELLVVEYYSR 190 >gi|20531083|gb|AAM27363.1| ribosomal protein 4 [Diphyscium mucronifolium] Length = 186 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I L + + LVVE+YSR Sbjct: 144 KIPNHLTLDSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|21914148|gb|AAM81296.1| ribosomal protein subunit 4 [Brachymenium capitulatum] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 151 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 152 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 193 >gi|293634067|gb|ADE60413.1| ribosomal protein subunit 4 [Polytrichadelphus innovans] Length = 182 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + + A + +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNDRIINIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 180 >gi|157689490|gb|ABV65301.1| ribosomal protein S4 [Hua gabonii] Length = 201 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 8/171 (4%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 30 RYRKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRMAGKAKGPTGQVLLQLLEMRLDNIL 88 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKS+ L S Sbjct: 89 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQKYLKSS 148 Query: 159 LAERDVPEYISVNHDNMVA-TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 R P++ NH + + + + + D + + + N LVVE+YSR Sbjct: 149 RHRRTRPKF--PNHLTLQGYQYKGVVNQIIDSKWVGLQKINELLVVEYYSR 197 >gi|121761714|gb|ABM64944.1| ribosomal protein S4 [Plagiomnium insigne] gi|121761716|gb|ABM64945.1| ribosomal protein S4 [Plagiomnium insigne] gi|121761720|gb|ABM64947.1| ribosomal protein S4 [Plagiomnium insigne] gi|121761740|gb|ABM64957.1| ribosomal protein S4 [Plagiomnium insigne] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|46811004|gb|AAT01820.1| small ribosomal protein 4 [Fossombronia foveolata] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 34 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 93 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQK- 151 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + T +R I ++ + + LVVE+YSR Sbjct: 152 -PK--TPNHLTLDLTRLRGSINQTIDRDWIDLKINELLVVEYYSR 193 >gi|46811006|gb|AAT01821.1| small ribosomal protein 4 [Fossombronia sp. Stotler & Crandall-Stotler 3940] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 36 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 95 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQK- 153 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + T +R I ++ + + LVVE+YSR Sbjct: 154 -PK--TPNHLTLDLTRLRGSINQTIDRDWIDLKINELLVVEYYSR 195 >gi|33413203|emb|CAD86737.1| ribosomal protein small subunit 4 [Leucobryum glaucum] Length = 180 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEKKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 78 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 138 KVPNHLTFNSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 178 >gi|33413257|emb|CAD86763.1| ribosomal protein small subunit 4 [Cinclidotus fontinaloides] Length = 190 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVEFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 188 >gi|7576763|gb|AAF63978.1| small ribosomal protein 4 [Lyellia aspera] Length = 191 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIAKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N + T + L + + LVVE+YSR Sbjct: 149 KIPNHLTFNS---LETKGLVNQILDRESIGLKINELLVVEYYSR 189 >gi|3098164|gb|AAC15530.1| small ribosomal protein 4 [Plagiobryum donianum] gi|27227939|gb|AAN85767.1| ribosomal protein subunit 4 [Bryum preissianum] Length = 199 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|157689554|gb|ABV65333.1| ribosomal protein S4 [Schinus terebinthifolius] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 105/179 (58%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q S+ L Sbjct: 81 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDDQNSRAL 140 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S E +P++++++ + + + + D + V ++ N LVVE+YSR Sbjct: 141 IQNYLDSSHHEE--LPKHLTLH----AVQYKGLVNQIIDSKW-VGLKINELLVVEYYSR 192 >gi|22854733|gb|AAN09786.1| small ribosomal protein 4 [Sclerodontium clavinerve] Length = 191 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K +++ + +++ Sbjct: 89 GIAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|28194793|gb|AAO33658.1|AF481013_1 ribosomal protein S4 [Pottia intermedia] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|21914150|gb|AAM81297.1| ribosomal protein subunit 4 [Plagiobryum algovicum] gi|63191693|gb|AAY34808.1| small ribosomal protein subunit 4 [Rosulabryum albolimbatum] Length = 198 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 154 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 155 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 196 >gi|238058442|gb|ACR39372.1| small ribosomal protein 4 [Ptychostomum lonchocaulon] gi|262192912|gb|ACY30473.1| small ribosomal subunit protein 4 [Anomobryum auratum] gi|262192916|gb|ACY30475.1| small ribosomal subunit protein 4 [Bryum amblyodon] Length = 188 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 144 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 145 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 186 >gi|21914154|gb|AAM81299.1| ribosomal protein subunit 4 [Plagiobryum archangelicum] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 153 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 154 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 195 >gi|63078652|gb|AAY29412.1| ribosomal protein S4 [Tuerckheimia valeriana] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVYFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|24473838|gb|AAL82763.1| small ribosomal subunit protein 4 [Bryum funckii] Length = 199 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|262192922|gb|ACY30477.1| small ribosomal subunit protein 4 [Pohlia crudoides] Length = 188 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 186 >gi|222103438|gb|ACM44248.1| small ribosomal protein subunit 4 [Brothera leana] Length = 203 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +A +E SQ Sbjct: 101 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIEFSQ-- 158 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 159 KYKVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 201 >gi|121761879|gb|ABM65025.1| ribosomal protein S4 [Plagiomnium vesicatum] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEVLLQLLETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPAARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNFLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|14090470|gb|AAK53520.1| small ribosomal protein 4 [Leucobryum tahitense] Length = 182 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++++ +I L + + LVVE+YSR Sbjct: 140 KVPNHLTLDSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 180 >gi|28194855|gb|AAO33689.1|AF481044_1 ribosomal protein S4 [Eucladium verticillatum] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRQKSQIMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|222103524|gb|ACM44291.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 203 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 101 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 160 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 161 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 201 >gi|14090468|gb|AAK53519.1| small ribosomal protein 4 [Leucobryum antillarum] Length = 182 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 180 >gi|47606918|gb|AAT36379.1| ribosomal protein subunit 4 [Pohlia nutans] Length = 199 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDQQKSQTMISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|295136909|ref|YP_003587741.1| ribosomal protein S4 [Lathyrus sativus] gi|293338631|gb|ADE43603.1| ribosomal protein S4 [Lathyrus sativus] Length = 201 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 44 YRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAA 102 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE 166 TI ARQ VNHRHVLVNGR V+I SYRCK D+I K + K + + + A R VP Sbjct: 103 TIPEARQLVNHRHVLVNGRIVDIPSYRCKPKDIITAKDEQKSRTIIQNSLKSAPRKRVPT 162 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++++ D +I S K V + LVVE+YSR Sbjct: 163 HLTLHPDQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|256371242|ref|YP_003109066.1| ribosomal protein S4 [Acidimicrobium ferrooxidans DSM 10331] gi|256007826|gb|ACU53393.1| ribosomal protein S4 [Acidimicrobium ferrooxidans DSM 10331] Length = 208 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 104/183 (56%), Gaps = 4/183 (2%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K P+ PG HG+ R+ +PS + +QLR KQ+ ++ YG + K+F+ +++A R G Sbjct: 30 KCPITQGRVPPGQHGRDRQRQPSEYAIQLREKQRARRTYG-VMGKQFQRFYRDAARRSGI 88 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T NL++ LE RLD +V+RA + + ARQ V H HVLV+G+ V+I SYR + G V+ + Sbjct: 89 TGENLLALLELRLDNVVFRALWGSSRAQARQLVRHGHVLVDGQRVDIPSYRLRPGQVVTL 148 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K++ L + + R+VP ++ V + +P L+D ++ L+VE Sbjct: 149 NPKARDLDIIAFNREHLTREVPAWLEVTDGGSGVRVLSVP--LRD-QIDTEVREQLIVEL 205 Query: 204 YSR 206 +S+ Sbjct: 206 FSK 208 >gi|222103434|gb|ACM44246.1| small ribosomal protein subunit 4 [Trachycystis microphylla] gi|222103454|gb|ACM44256.1| small ribosomal protein subunit 4 [Trachycystis microphylla] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFIAIKDRQKSQTIISKNIDFYQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 195 >gi|218157223|gb|ACK58428.1| ribosomal protein subunit 4 [Polytrichadelphus magellanicus] Length = 180 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + + A + +++ Sbjct: 78 GMAPTIPGARQLVNHKHILVNDRIINIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 178 >gi|157689448|gb|ABV65280.1| ribosomal protein S4 [Clusia rosea] Length = 179 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 7 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLL 65 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+L+NG VNI SYRCK D+I + + K A Sbjct: 66 EMRLDNILFRLGMASTIPRARQLVNHRHILINGHIVNIPSYRCKPRDIITARDEQKSRAM 125 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P+++++ +I S K V + LVVE+YSR Sbjct: 126 IQNYLDSS--SREELPKHLTLRPFEYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 177 >gi|20531059|gb|AAM27352.1| ribosomal protein 4 [Buxbaumia piperi] Length = 193 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARAAKGSTGQILLQSLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + + +L++R Sbjct: 91 GIAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKNSQKSPTIITKNIELSQRY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N +I L + + LVVE+YSR Sbjct: 151 QIPNHLTLNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 191 >gi|3098166|gb|AAC15531.1| small ribosomal protein 4 [Anomobryum julaceum] gi|24473830|gb|AAL82759.1| small ribosomal subunit protein 4 [Bryum russulum] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 150 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 151 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 192 >gi|307828407|gb|ADN95001.1| small ribosomal protein 4 [Fossombronia pusilla] gi|307828440|gb|ADN95016.1| small ribosomal protein 4 [Fossombronia pusilla] Length = 185 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 24 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 83 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKA 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 143 KTPNHLTLDSTRLRGS---INQTIDRDWINLKINELLVVEYYSR 183 >gi|222103422|gb|ACM44240.1| small ribosomal protein subunit 4 [Brothera leana] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +A +E SQ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIEFSQ-- 151 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 152 KYKVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 194 >gi|21914172|gb|AAM81308.1| ribosomal protein subunit 4 [Bryum pseudotriquetrum] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 152 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 153 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 194 >gi|28194831|gb|AAO33677.1|AF481032_1 ribosomal protein S4 [Syntrichia papillosa] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+L+N R VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILINNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|83940945|gb|ABC48869.1| rps4 [Changiostyrax dolichocarpa] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GTDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + + K A Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITARDEQKSRAL 140 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 V + + S +H+ + P K + +I + LVVE+Y Sbjct: 141 VQNS----------FDSSHHEELPKHLTLYPFQYKGLVNQIIDSKWIGLKINELLVVEYY 190 Query: 205 SR 206 SR Sbjct: 191 SR 192 >gi|293634009|gb|ADE60384.1| ribosomal protein subunit 4 [Oligotrichum afrolaevigatum] Length = 176 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 74 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 134 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 174 >gi|37960577|gb|AAP70658.1| small ribosomal protein 4 [Sphagnum aongstroemii] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTSKIPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 131 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|28194717|gb|AAO33620.1|AF480975_1 ribosomal protein S4 [Cinclidotus fontinaloides] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVEFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|7576767|gb|AAF63980.1| small ribosomal protein 4 [Oligotrichum parallelum] Length = 182 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDQQESQAIIARNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 180 >gi|3098162|gb|AAC15529.1| small ribosomal protein 4 [Bryum caespiticium] Length = 189 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 145 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 146 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 187 >gi|307828377|gb|ADN94987.1| small ribosomal protein 4 [Fossombronia pusilla] gi|307828383|gb|ADN94990.1| small ribosomal protein 4 [Fossombronia pusilla] gi|307828385|gb|ADN94991.1| small ribosomal protein 4 [Fossombronia wattsii] gi|307828436|gb|ADN95015.1| small ribosomal protein 4 [Fossombronia sp. VF-2010] Length = 188 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 27 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 86 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKA 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 146 KTPNHLTLDSTRLRGS---INQTIDRDWINLKINELLVVEYYSR 186 >gi|63078617|gb|AAY29395.1| ribosomal protein S4 [Tortella flavovirens] gi|63078619|gb|AAY29396.1| ribosomal protein S4 [Tortella flavovirens] gi|63078621|gb|AAY29397.1| ribosomal protein S4 [Tortella flavovirens var. glareicola] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 195 >gi|3098210|gb|AAC15553.1| small ribosomal protein 4 [Tayloria orthodonta] Length = 190 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PT+ ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + +++ Sbjct: 88 GMAPTVPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNQQKSQAIINKNIEFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|67035636|gb|AAY62749.1| small ribosomal protein subunit 4 [Sclerodontium pallidum] Length = 199 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K +++ + +++ Sbjct: 97 GIAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|22854735|gb|AAN09787.1| small ribosomal protein 4 [Sclerodontium pallidum] Length = 190 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K +++ + +++ Sbjct: 88 GIAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|21914178|gb|AAM81311.1| ribosomal protein subunit 4 [Haplodontium reticulatum] gi|24473840|gb|AAL82764.1| small ribosomal subunit protein 4 [Ptychostomum pallescens] Length = 190 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 146 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 147 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 188 >gi|295101438|emb|CBK98983.1| SSU ribosomal protein S4P [Faecalibacterium prausnitzii L2-6] Length = 200 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 7/172 (4%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 +G RK K S + QL+ KQK+K YG + EK+F + + +A+ G T NL+ +E RL Sbjct: 34 NGNMRK-KQSEYATQLKEKQKVKFIYG-VLEKQFHNAYLKAEAMPGKTGENLLQLMERRL 91 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA--SVL 154 D +V+R F T ARQ V+H H VNG+ VNI SY K GDVIEV++ S+ A + L Sbjct: 92 DNVVFRLGFAQTRRDARQLVSHAHFTVNGKKVNIPSYLIKAGDVIEVRESSRSSAKFAKL 151 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++ + ++P D+ Y V +L+VE YS+ Sbjct: 152 TGPEAPVVALPSWLDREAGTLKGVVNKLPER-SDIDYEV--AEHLIVELYSK 200 >gi|289599959|gb|ADD12930.1| ribosomal protein S4 [Tetracera portobellensis] Length = 189 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 13/197 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G TRS L Q R K S + ++L KQK++ +YG ++E++ Sbjct: 1 RRLG-SLPGLTSKRPKTRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLK 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I S Sbjct: 56 YVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 YRCK D+I VK + K A + L++S ++P++++++ +I S K V Sbjct: 116 YRCKPRDIITVKDEHKSRALIQNYLDSS--PHEELPKHLTLHAFQYKGLVNQIIDS-KWV 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 173 GLKI--NELLVVEYYSR 187 >gi|32401810|gb|AAP80893.1| small ribosomal protein 4 [Sassafras albidum] Length = 184 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 106/189 (56%), Gaps = 18/189 (9%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 RPRS-------GSDLRNQSRFGKRSQYRIRLEEKQKLRFHYG-LTERQLLXYVRIAGKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 60 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRVVDIPSYRCKPRDII 119 Query: 142 EVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQP 197 + + + A + L++S D+ ++++ + + + + + + D+ + + + Sbjct: 120 TARDEQRSRALIQNYLDSS--PREDLAKHLTFDS----SQYKGLVNQIIDIKWIGLKINE 173 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 174 FLVVEYYSR 182 >gi|14090502|gb|AAK53536.1| small ribosomal protein 4 [Dicranodontium pulchroalare] Length = 183 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +A +E SQ Sbjct: 81 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIEFSQ-- 138 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ N +I L + + LVVE+YSR Sbjct: 139 KYKVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 181 >gi|28194853|gb|AAO33688.1|AF481043_1 ribosomal protein S4 [Tortella flavovirens] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|63191743|gb|AAY34831.1| small ribosomal protein subunit 4 [Cryptopodium bartramioides] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 95 GMTPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKYQTIISKNIDFCQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPHHLTYNSLEKKGLVNQI---LDRESIALKINELLVVEYYSR 195 >gi|63191801|gb|AAY34860.1| small ribosomal protein subunit 4 [Bryoerythrophyllum campylocarpum] Length = 191 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+EK+ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITEKQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|158518576|sp|Q49CB8|RR4_CUSSA RecName: Full=Plastid 30S ribosomal protein S4 Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 110/208 (52%), Gaps = 15/208 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP R R + S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTNKSPRAIRDL--------RNNSRSEYRIRLEEKQKLRF 52 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 53 HYG-LTEKQLINYVQIARKAKGSTGKVLLQLLEMRLDNILFRLGMASTIXAARQLVNHRH 111 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-F 179 VLVNGR VN SYRCK D+I K +K + VL + L E NH N+ +T + Sbjct: 112 VLVNGRLVNRPSYRCKPHDIIMPKNTTK--SGVLVQNSLELFTGKEL--ANHLNLFSTPY 167 Query: 180 VRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + + D + + + LVVE+YSR Sbjct: 168 KGLVNKIVDTNWIGLKINELLVVEYYSR 195 >gi|67035720|gb|AAY62791.1| small ribosomal protein subunit 4 [Syrrhopodon texanus] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KTSQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 92 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITLKDQQKYQTMIIKNVNFSPKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPSHLTFNSVEKKGLVTQI---LDQESIGLKVNELLVVEYYSR 192 >gi|307828405|gb|ADN95000.1| small ribosomal protein 4 [Fossombronia sp. VF-2010] gi|307828413|gb|ADN95004.1| small ribosomal protein 4 [Fossombronia cultriformis] Length = 187 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIARSMSLFQKA 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 145 KTPNHLTLDSTQLRGS---INQTIDRDWINLKINELLVVEYYSR 185 >gi|74273237|gb|ABA01318.1| ribosomal protein S4 [Deidamia sp. LBF-2005] Length = 186 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 20/195 (10%) Query: 19 LWGRP-KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 L G P KSP N ++ Q R K S + ++L+ KQK++ +YG ++E++ + A Sbjct: 3 LPGLPSKSPKNRSAF----QNQSRSGKKSQYSIRLQEKQKLRFHYG-LTERQLLKYVRIA 57 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 +++G T L+ LE RLD +++R TI ARQ VNHRH+LVNGR V+I +YRCK Sbjct: 58 AKAKGPTGQVLLQLLEMRLDNMLFRLGMASTIPQARQLVNHRHILVNGRIVDIPNYRCKP 117 Query: 138 GDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPY 191 D+I VK QK K L AS + +P++++++ + +V + R LK Sbjct: 118 RDLITVKDEQKLKDLIRNSLAS-FPQDKLPKHLTLDPLQYKGLVNQIIDRKWVGLK---- 172 Query: 192 PVIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 173 ---INELLVVEYYSR 184 >gi|293611962|gb|ADE48425.1| ribosomal protein 4 [Ceratozamia kuesteriana] gi|293611964|gb|ADE48426.1| ribosomal protein 4 [Ceratozamia microstrobila] Length = 183 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I SYRC DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPSYRCNPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 VRDQQRSRAMIDKNLDLSQKDQMPNHLTLHSSRYKGLVHQIIDS-KWISLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|20531128|gb|AAM27384.1| ribosomal protein 4 [Encalypta intermedia] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRHVLVN VNI SYRCK D I ++ + K A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHVLVNDCIVNIPSYRCKPQDFISIRDRQKSQAIIIKNIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S + +I L + + LVVE+YSR Sbjct: 152 KVPNHLSFDSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|307828434|gb|ADN95014.1| small ribosomal protein 4 [Fossombronia sp. VF-2010] Length = 186 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 84 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKA 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 144 KTPNHLTLDSTRLRGS---INQTIDRDWINLKINELLVVEYYSR 184 >gi|222103456|gb|ACM44257.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 200 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 97 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 156 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 157 KIPNHLAFN 165 >gi|121761837|gb|ABM65004.1| ribosomal protein S4 [Plagiomnium confertidens] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|146261561|gb|ABQ15090.1| ribosomal protein S4 [Exbucklandia populnea] Length = 195 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 23 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 82 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 141 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E ++P++++++ +I S K V + LVVE+YSR Sbjct: 142 IQNYIDSSPHE-ELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 193 >gi|17025828|gb|AAL32081.1| ribosomal protein 4 [Syrrhopodon muelleri] Length = 198 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + Sbjct: 96 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTSF---- 151 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 152 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 196 >gi|6002027|emb|CAA58920.1| ribosomal protein S4 [Arum italicum] Length = 196 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LAGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVN 171 NHRH+LVNG V+I SYRCK D+I K K + A + L + +VP++++++ Sbjct: 112 NHRHILVNGGIVDIPSYRCKPRDIIATKDKQRSKALIQNNIALSSHEEVPKHLTID 167 >gi|63191706|gb|AAY34814.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 192 >gi|305672295|gb|ADM63571.1| ribosomal protein S4 [Torricellia tiliifolia] Length = 173 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R +K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSAKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVNG V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISVN 171 + + + D +P++++++ Sbjct: 139 IQNSLDSSPHDELPKHLTLH 158 >gi|118577538|gb|ABL07135.1| small ribosomal protein 4 [Peperomia congesta] Length = 184 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 13/186 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 7 KRPVSESS----LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 61 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRHVLVNG V+I SYRCK D+I Sbjct: 62 TGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGHIVDIPSYRCKPRDIITT 121 Query: 144 KQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LV 200 + K V + A R ++P++++++ + + I + + D + V ++ N LV Sbjct: 122 RNAQKSKILVQNSMDSASREELPKHLTLDS----SQYKGIVNQIIDSKW-VGLKINELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|157689566|gb|ABV65339.1| ribosomal protein S4 [Suriana maritima] Length = 182 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 10 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 68 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L Sbjct: 69 EMRLDNIIFRLGMASTIPQARQLVNHRHILVNGRMVDIPSYRCKPQDIITPRDEQKSRAL 128 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E ++P++++++ +I S K V + LVVE+YSR Sbjct: 129 LQNYLDSPPRE-ELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 180 >gi|115604936|ref|YP_784388.1| ribosomal protein S4 [Drimys granadensis] gi|122164439|sp|Q06GZ5|RR4_DRIGR RecName: Full=30S ribosomal protein S4, chloroplastic gi|112032664|gb|ABH88299.1| ribosomal protein S4 [Drimys granadensis] Length = 201 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTRKRPRS-------GSDLRNQSRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVNGR V+I SYRCK D+I + Q+S+ L S E ++ +++S+ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPQDIITTRDEQRSRALIQNYMDSSPHE-ELAKHLSL---- 166 Query: 175 MVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + + + + D+ + + + LVVE+YSR Sbjct: 167 YSSQYKGLVNQIIDIKWIGLKINELLVVEYYSR 199 >gi|63078646|gb|AAY29409.1| ribosomal protein S4 [Oxystegus tenuirostris] Length = 197 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVN 171 +P +++ N Sbjct: 155 KIPNHLTFN 163 >gi|63191883|gb|AAY34901.1| small ribosomal protein subunit 4 [Ganguleea angulosa] Length = 194 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVLFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K A + + +++ Sbjct: 92 GIAPTIPGARQLVNHRHILVNNRLVNIPSYCCKPQDFITIKDRQKSQALITKYIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|33413169|emb|CAD86767.1| ribosomal protein small subunit 4 [Codriophorus fascicularis] Length = 153 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 139 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 140 KIPNHLTFN 148 >gi|11121222|emb|CAC14796.1| ribosomal protein subunit 4 [Mielichhoferia macrocarpa] Length = 190 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKLEDSITIKDRQKSQAIISKNLNLYQK- 146 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 147 ---YKTPNH--LTYNFLKNKGLVNQILDRESIGLKINELLVVEYYSR 188 >gi|3914842|sp|O47026|RR4_ASPSB RecName: Full=30S ribosomal protein S4, chloroplastic gi|2808628|emb|CAA58922.1| ribosomal protein S4 [Asparagus maritimus] Length = 196 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNPLRSVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQTSIASSPHE-ELPNHLTID 167 >gi|118577548|gb|ABL07140.1| small ribosomal protein 4 [Peperomia puteolata] Length = 183 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 100/184 (54%), Gaps = 9/184 (4%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 6 KRPVSESS----LRSQPRYGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRHVLVNG V+I SYRCK D+I Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGHIVDIPSYRCKPRDIITT 120 Query: 144 KQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + K V + A R ++P++++++ +I +S K V + LVVE Sbjct: 121 RNAQKSKVLVQNSMDSASREELPKHLTLDSSQYKGIVNQIINS-KWVGLKI--NELLVVE 177 Query: 203 FYSR 206 +YSR Sbjct: 178 YYSR 181 >gi|146261581|gb|ABQ15100.1| ribosomal protein S4 [Pterostemon rotundifolius] Length = 188 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 19/179 (10%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 19 LRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMR 77 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A + Sbjct: 78 LDNILFRLGMASTIPGARQLVNHRHILVNGRJVDIPSYRCKSRDIITARDEQKSRALIQN 137 Query: 154 -LEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 L++S ++P++++++ + +V + D + V ++ N LVVE+YSR Sbjct: 138 YLDSS--PHEELPKHLTLHPFQYKGLVNQII-------DTKW-VGLKINELLVVEYYSR 186 >gi|311901160|gb|ADQ13130.1| small ribosomal protein 4 [Cyclopeltis crenata] Length = 177 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 15 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVLLQLLEMRLDNVIFHL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ ++ ++VL L Sbjct: 74 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDIITVRNRTTS-SNVLRGKFLEGDK 132 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N A + ++ + V + LVVE+YSR Sbjct: 133 TPDHLTISLSEGNKPAGLIHCIANRESVNLNI--NELLVVEYYSR 175 >gi|121761831|gb|ABM65001.1| ribosomal protein S4 [Plagiomnium affine] Length = 186 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 184 >gi|118626157|emb|CAL39376.1| small ribosomal protein 4 [Barbilophozia attenuata] Length = 202 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ FLE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQFLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRSKQKSQSIVTKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|117306752|emb|CAH73345.1| ribosomal protein S4 [Cyathophorum africanum] Length = 183 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVNG V+I SYRCK D I +K + K A + + +L ++ Sbjct: 81 GIAPTIPGARQLVNHKHILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIELDQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N + +I L + + LVVE+YSR Sbjct: 141 KIPNHLSYNSLEKKGSVNQI---LDRESIGLKINELLVVEYYSR 181 >gi|42718072|gb|AAS38458.1| rps4 [Tayloria indica] Length = 188 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PT+ ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + +++ Sbjct: 86 GMAPTVPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNQQKSQAIINKNIEFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|12642254|gb|AAK00209.1| rps4 [Goniomitrium acuminatum] Length = 189 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMISKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|28194667|gb|AAO33595.1|AF480950_1 ribosomal protein S4 [Didymodon australasiae] Length = 196 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K V + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQVMVAKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L+ + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LEQESIGLKINELLVVEYYSR 194 >gi|307828444|gb|ADN95018.1| small ribosomal protein 4 [Fossombronia altilamellosa] Length = 185 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 24 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 83 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRHKSQSIIAKSMSLFQK- 141 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 142 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 183 >gi|121761730|gb|ABM64952.1| ribosomal protein S4 [Plagiomnium drummondii] gi|121761744|gb|ABM64959.1| ribosomal protein S4 [Plagiomnium ciliare] gi|121761796|gb|ABM64984.1| ribosomal protein S4 [Plagiomnium ciliare] gi|121761810|gb|ABM64991.1| ribosomal protein S4 [Plagiomnium ciliare] gi|121761812|gb|ABM64992.1| ribosomal protein S4 [Plagiomnium ciliare] Length = 195 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|74273209|gb|ABA01304.1| ribosomal protein S4 [Passiflora mathewsii] Length = 183 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P++++++ +I S K V P+ LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFPRKKLPKHLTLHPFQYKGLVTQIIDS-KWVGLPI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|118577544|gb|ABL07138.1| small ribosomal protein 4 [Peperomia hoffmannii] Length = 184 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 15/187 (8%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 7 KRPVSESS----LRSQPRYGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 61 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRHVLVNG V+I SYRCK D+I Sbjct: 62 TGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGHIVDIPSYRCKPRDIITT 121 Query: 144 K--QKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + QKSK L S+ AS+ ++P++++++ +I +S K V + L Sbjct: 122 RNAQKSKVLVQNSMYSASR---EELPKHLTLDSSQYKGIVNQIINS-KWVGLKI--NELL 175 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 176 VVEYYSR 182 >gi|42718068|gb|AAS38456.1| rps4 [Brachymitrion cochabambae] Length = 189 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KTSQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQAIIKKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKNQGLINQI---LDRESIGLKINELLVVEYYSR 187 >gi|293634103|gb|ADE60431.1| ribosomal protein subunit 4 [Polytrichastrum sexangulare] Length = 185 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVNQI---LDRELIGLKINELLVVEYYSR 183 >gi|114107135|ref|YP_740119.1| ribosomal protein S4 [Daucus carota] gi|122221312|sp|Q0G9W0|RR4_DAUCA RecName: Full=30S ribosomal protein S4, chloroplastic gi|113200910|gb|ABI32426.1| ribosomal protein S4 [Daucus carota] Length = 201 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 31/218 (14%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRA-------GSDLRNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMATTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV 176 NHRH+LVNGR V+I SYRCK D+I + + A + + + S + D M Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNS----------FNSPSQDEMP 161 Query: 177 ATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 P K + +I + LVVE+YSR Sbjct: 162 KHLTLQPFQYKGLVNQIIDSKWVGLKINELLVVEYYSR 199 >gi|15145844|gb|AAK83540.1| rps4 [Tayloria orthodonta] gi|42718070|gb|AAS38457.1| rps4 [Tayloria chiapensis] Length = 189 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PT+ ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + +++ Sbjct: 87 GMAPTVPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNQQKSQAIINKNIEFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|307828394|gb|ADN94995.1| small ribosomal protein 4 [Fossombronia wattsii] Length = 198 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 37 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 96 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKP 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 P +++++ + + + + D + + ++ N LVVE+YSR Sbjct: 156 KTPNHLTLDSTRLRGSI----NQMIDRDW-INLKINELLVVEYYSR 196 >gi|307828375|gb|ADN94986.1| small ribosomal protein 4 [Fossombronia altilamellosa] Length = 187 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRHKSQSIIAKSMSLFQK- 143 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 144 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 185 >gi|305672281|gb|ADM63564.1| ribosomal protein S4 [Coriandrum sativum] Length = 173 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 2/139 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVN R V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 VLEASQLAERD-VPEYISV 170 + + + +D +P+++++ Sbjct: 139 IQNSFDSSSQDEMPKHLTL 157 >gi|305672183|gb|ADM63515.1| ribosomal protein S4 [Irvingbaileya australis] Length = 173 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRHVLVN R V+I SYRCK D+I + + K A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHVLVNSRIVDIPSYRCKPRDIIMARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + LE+S + P++++++ Sbjct: 139 IQNSLESS--PHEESPKHLTLH 158 >gi|293612024|gb|ADE48456.1| ribosomal protein 4 [Zamia inermis] Length = 173 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 12 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 71 GMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIDKNLDLSQKD 130 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 131 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 171 >gi|121761759|gb|ABM64966.1| ribosomal protein S4 [Plagiomnium affine] gi|121761761|gb|ABM64967.1| ribosomal protein S4 [Plagiomnium affine] Length = 195 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|107770430|gb|ABF83756.1| small ribosomal protein 4 [Taxus wallichiana var. chinensis] Length = 189 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 4/130 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG ++E++ + A RS+G T L+ LE RLD I++R Sbjct: 35 KPSKYPIRLKEKQRVRFHYG-LTERQLLQYARIARRSKGSTGQVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ V+HRH+LVN R V+I SYRCK D+I +K + + + + L++RD Sbjct: 94 GMALTIPGARQLVSHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSINIINNNIDLSQRD 153 Query: 164 ---VPEYISV 170 VP ++++ Sbjct: 154 KMRVPNHLNL 163 >gi|113170474|ref|YP_717265.1| Rps4 [Ostreococcus tauri] gi|112806881|emb|CAL36387.1| unnamed protein product [Ostreococcus tauri] Length = 209 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 10/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M ++ K K R+ G LW + + + K S F LQLRAKQ + Sbjct: 1 MKIQKQLKGKPCRKFGAFLWKTRTFTIKQEKAVSLANKKVNTKKLSNFALQLRAKQLVSA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + + F+ + +++ + RG +H S LE RLD+ + + KF PT AARQ +NH+ Sbjct: 61 LYGQLKLQHFKHLLQQSQKYRGKLAHIFFSLLEKRLDSCLVQLKFAPTFLAARQLINHKK 120 Query: 121 VLVNGRSVNIGSYRCKEGDVI----EVKQK---SKQLASVLEASQLAERDVPEYISVNHD 173 V +NG + K GD + E++ + + Q A L S+ P + VN+ Sbjct: 121 VCINGNIITAPGVLLKPGDSVSFIPEIQTRVASNVQTACALHDSKKVLAYKPLHFEVNYK 180 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 + A F+ P + V YP ++P LV++ Sbjct: 181 TLEAIFLFSP---QQVHYPTRIEPELVLK 206 >gi|107770432|gb|ABF83757.1| small ribosomal protein 4 [Taxus cuspidata] Length = 175 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 4/130 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG ++E++ + A RS+G T L+ LE RLD I++R Sbjct: 31 KPSKYPIRLKEKQRVRFHYG-LTERQLLQYARIARRSKGSTGQVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ V+HRH+LVN R V+I SYRCK D+I +K + + + + L++RD Sbjct: 90 GMALTIPGARQLVSHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSINIINNNIDLSQRD 149 Query: 164 ---VPEYISV 170 VP ++++ Sbjct: 150 KMRVPNHLNL 159 >gi|6002045|emb|CAA58932.1| ribosomal protein S4 [Dioscorea polystachya] Length = 196 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 18/178 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDFKNQSRFGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTEQQLLRYIHIAGKAKGSTDQVLLQLLEMRLDNILFRLGMASTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K K + + + +E+S ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKVLIQNSIESS--PHEELPKHLTID 167 >gi|24473828|gb|AAL82757.1| small ribosomal subunit protein 4 [Rhodobryum keniae] Length = 196 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRPKSQAIISKNLNLYQK- 152 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 153 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 194 >gi|24473812|gb|AAL82749.1| small ribosomal subunit protein 4 [Bryum argenteum] Length = 199 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|184128077|gb|ACC67938.1| ribosomal protein small subunit 4 [Psilotum nudum] Length = 183 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + L+L AKQ+++ YG ++E++ A ++RG T L+ LE RLD Sbjct: 14 QSTSKKRSQYSLRLEAKQRLRFNYG-VTERQLLKYVCIAKKARGSTGQVLLQLLEMRLDN 72 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R PTI ARQ VNHRH+LVN + V+I SYRCK D+I V+ K + + Sbjct: 73 IIFRLGLSPTIPGARQLVNHRHILVNDQIVDIPSYRCKPNDIITVRDHQKSQELIKRNIK 132 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 LA+ D +P ++++++ I + + + LVVE+YSR Sbjct: 133 LAKIDEIPSHLNISYLEETKPKGFINKIVDRGSIGLEINELLVVEYYSR 181 >gi|157689452|gb|ABV65282.1| ribosomal protein S4 [Coriaria nepalensis] Length = 195 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG I+E++ + A +++G T L+ L Sbjct: 23 GSDLKNQPRSGKKSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIAGKAKGSTGQVLLQLL 81 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I K QKS+ L Sbjct: 82 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITAKDEQKSRTL 141 Query: 151 -ASVLEASQLAERDVPEYIS---VNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + L++S ++P++++ V + +V + D + V ++ N LVVE+Y Sbjct: 142 IQNYLDSS--PHEELPKHLTLHPVQYKGLVNQII-------DSKW-VGLKINELLVVEYY 191 Query: 205 SR 206 SR Sbjct: 192 SR 193 >gi|63101103|gb|AAY33176.1| small ribosomal protein 4 [Timmia megapolitana] Length = 199 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A +++ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNRQKSQAILMKNIDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N+ +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNYLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|293634101|gb|ADE60430.1| ribosomal protein subunit 4 [Polytrichastrum sexangulare] Length = 183 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 81 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLEKKGLVNQI---LDRELIGLKINELLVVEYYSR 181 >gi|42794638|gb|AAS45717.1| Rps4 [Ceratostema lanigerum] Length = 211 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 97/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + +L+ KQK++ +YG ++E++ + +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHXRLQEKQKLRFHYG-LTERQLLKYVRIXGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSHKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|6002085|emb|CAA58952.1| ribosomal protein S4 [Taxus baccata] Length = 202 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 4/130 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG ++E++ + A RS+G T L+ LE RLD I++R Sbjct: 42 KPSKYPIRLKEKQRVRFHYG-LTERQLLQYARIARRSKGSTGQVLLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ V+HRH+LVN R V+I SYRCK D+I +K + + + + L++RD Sbjct: 101 GMALTIPGARQLVSHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSINIINNNIDLSQRD 160 Query: 164 ---VPEYISV 170 VP ++++ Sbjct: 161 KMRVPNHLNL 170 >gi|3098190|gb|AAC15543.1| small ribosomal protein 4 [Pohlia bolanderi] Length = 199 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDQQKSQIMISKNIDFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|63191714|gb|AAY34817.1| small ribosomal protein subunit 4 [Pohlia nutans] Length = 196 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRFARKAKGSTGEVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDQQKSQTMISKNIDFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 194 >gi|51860469|gb|AAU11371.1| ribosomal protein small subunit 4 [Gnetum leyboldii] Length = 200 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 11/176 (6%) Query: 38 GQRRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 G R+ S+P + Q L+ KQK++ ++G ++E++ R + A + +G T L+ LE Sbjct: 27 GVRQSSRPWWKKSQHLACLQEKQKIRFHFG-LTERQLRQYVQIAKKVQGSTGQVLLQLLE 85 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLAS 152 RLD I+Y+ TI AARQ VNHRH+LVN VNI SYRCK DVI +K K+ QL + Sbjct: 86 MRLDNILYQLGLTGTIPAARQLVNHRHILVNDHVVNIPSYRCKPQDVITIKGKNPDQLKT 145 Query: 153 VLEASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 146 IITRNRNKTRENKIPYHLTLDLSQKKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 198 >gi|28194745|gb|AAO33634.1|AF480989_1 ribosomal protein S4 [Tortula bolanderi] gi|28194773|gb|AAO33648.1|AF481003_1 ribosomal protein S4 [Tortula bolanderi] gi|85001763|gb|ABC68419.1| small ribosomal protein 4 [Tortula bolanderi] Length = 196 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|34501413|ref|NP_904200.1| ribosomal protein S4 protein [Physcomitrella patens subsp. patens] gi|52783338|sp|Q6YXP3|RR4_PHYPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|34494783|dbj|BAC85050.1| ribosomal protein S4 protein [Physcomitrella patens subsp. patens] Length = 201 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 VLVN V+I SYRCK D I VK + K A + + +++ VP +++ + Sbjct: 116 VLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 NQI---LDRESIGLKINELLVVEYYSR 199 >gi|32879553|emb|CAE11887.1| ribosomal protein S4 [Devia xeromorpha] Length = 151 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD I++R Sbjct: 1 KRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAE 161 TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L AS + Sbjct: 60 GMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTNNKQRSKALIQNFIASSPHQ 119 Query: 162 RDVPEYISVN 171 ++P +++++ Sbjct: 120 EELPNHLTID 129 >gi|17154631|emb|CAC83929.1| ribosomal protein S4 [Kabuyea hostifolia] Length = 174 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GNDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGRVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKERSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P++++++ Sbjct: 133 IQNYIASSPPE-ELPKHLTID 152 >gi|24473836|gb|AAL82762.1| small ribosomal subunit protein 4 [Bryum cellulare] Length = 199 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GIAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|262192908|gb|ACY30471.1| small ribosomal subunit protein 4 [Rhodobryum ontariense] Length = 188 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRC+ D I +K + K A + + L ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCRPEDFITIKDRQKSQAIISKNLNLYQK- 144 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 145 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 186 >gi|37960587|gb|AAP70663.1| small ribosomal protein 4 [Sphagnum cymbifolioides] Length = 195 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTSKTPQSKSNYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 131 SIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|33413255|emb|CAD86762.1| ribosomal protein small subunit 4 [Cinclidotus fontinaloides] Length = 182 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVEFSQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 180 >gi|6002065|emb|CAA58939.1| ribosomal protein S4 [Musa x paradisiaca] Length = 196 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNQLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K K + A + L+ ++P++++ + Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIALSPPEELPKHLTFD 167 >gi|18028084|gb|AAL55966.1| ribosomal protein S4 [Jamesonia imbricata] Length = 191 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 10/193 (5%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G W + + ++ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 5 GLTGWDKTSNSLDFRVAGD----QSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVR 59 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 60 IARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRC 119 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPV 193 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 120 NPKDIITIRNQPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI 178 Query: 194 IMQPNLVVEFYSR 206 LVVEFYSR Sbjct: 179 --NELLVVEFYSR 189 >gi|307828400|gb|ADN94998.1| small ribosomal protein 4 [Fossombronia wattsii] Length = 197 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 36 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 95 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKP 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 P +++++ + + + + D + + ++ N LVVE+YSR Sbjct: 155 KTPNHLTLDSTRLRGSI----NQMIDRDW-INLKINELLVVEYYSR 195 >gi|107770434|gb|ABF83758.1| small ribosomal protein 4 [Taxus wallichiana var. wallichiana] Length = 197 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 82/130 (63%), Gaps = 4/130 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG ++E++ + A RS+G T L+ LE RLD I++R Sbjct: 40 KPSKYPIRLKEKQRVRFHYG-LTERQLLQYARIARRSKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ V+HRH+LVN R V+I SYRCK D+I +K + + + + L++RD Sbjct: 99 GMALTIPGARQLVSHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSINIINNNIDLSQRD 158 Query: 164 ---VPEYISV 170 VP ++++ Sbjct: 159 KMRVPNHLNL 168 >gi|77019135|emb|CAH60174.1| chloroplast 30S ribosomal protein S4 [Funaria hygrometrica] Length = 198 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 9/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G L G +S P Q K S + ++L KQK++ +YG I+E++ Sbjct: 7 RIIRRLGV-LPGLTNKTPQLKSSSPN---QSAAKKISQYRIRLEEKQKLRFHYG-ITERQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+ Sbjct: 62 LLNYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVD 121 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 122 IPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKAKVPNHLTFDSTQKKGLVNQI---LDR 178 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 179 ESIGLKINELLVVEYYSR 196 >gi|37960593|gb|AAP70666.1| small ribosomal protein 4 [Sphagnum lescurii] Length = 191 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 8 PGLTSKTPQSKSNYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 67 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 126 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 127 SIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67035592|gb|AAY62727.1| small ribosomal protein subunit 4 [Rhamphidium dicranoides] Length = 199 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + + A +L+ +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDRQESQAMILKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|67035624|gb|AAY62743.1| small ribosomal protein subunit 4 [Mesotus celatus] Length = 194 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 33 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|260222204|emb|CBA31533.1| 30S ribosomal protein S4 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 137 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 5/134 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRP--KSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +S + + PG HG+ ++ S +GLQLR KQ Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSKPGQHGRTSGARTSDYGLQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + E++FR F EADR RG+T NL+ LESRLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLERQFRRYFAEADRRRGNTGANLMVLLESRLDNVVYRMGFGSTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNI 130 +H+ + VNG V Sbjct: 120 SHKAITVNGNPVTF 133 >gi|7576753|gb|AAF63973.1| small ribosomal protein 4 [Atrichum angustatum] Length = 191 Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAIITRNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 189 >gi|92417457|gb|ABE76824.1| ribosomal protein subunit 4 [Pottia truncata] Length = 200 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKS 157 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 198 >gi|32401828|gb|AAP80902.1| small ribosomal protein 4 [Euptelea polyandra] Length = 184 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 5/175 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + + K A Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITTRDEQKSRAL 130 Query: 153 VLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + ++P++++++ +I S K V + LVVE+YSR Sbjct: 131 IQNSLDSPPHEELPKHLTLHSSQYQGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|15145832|gb|AAK83534.1| rps4 [Tetraplodon urceolatus] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSKAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|12642208|gb|AAK00186.1| rps4 [Diphyscium foliosum] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLXYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V+HRH+LVN R VNI SYRC D I +K++ K +++ L+++ Sbjct: 87 GMAPTIPGARQLVHHRHILVNDRIVNIPSYRCXPQDFITIKERQKSQGIIVKNMDLSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|16565353|gb|AAL26195.1|AF313588_1 small ribosomal protein 4 [Psilotum nudum] Length = 229 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 Q K S + L+L AKQ+++ YG ++E++ A ++RG T L+ LE RLD Sbjct: 59 SQSTSKKRSQYSLRLEAKQRLRFNYG-VTERQLLKYVCIAKKARGSTGQVLLQLLEMRLD 117 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 I++R PTI ARQ VNHRH+LVN + V+I SYRCK D+I V+ K + Sbjct: 118 NIIFRLGLSPTIPGARQLVNHRHILVNDQIVDIPSYRCKPNDIITVRDHQKSQELIKRNI 177 Query: 158 QLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +LA+ D +P ++++++ I + + + LVVE+YSR Sbjct: 178 KLAKIDEIPSHLNISYLEETKPKGFINKIVDRGSIGLEINELLVVEYYSR 227 >gi|323652540|gb|ADX98521.1| ribosomal protein S4 [Cinnamodendron ekmanii] Length = 186 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + + A Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITTKDEQRSRAL 130 Query: 153 V 153 + Sbjct: 131 I 131 >gi|218157213|gb|ACK58423.1| ribosomal protein subunit 4 [Atrichum tenellum] Length = 188 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAIITRNINFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 186 >gi|28194741|gb|AAO33632.1|AF480987_1 ribosomal protein S4 [Pottia pallida] Length = 196 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|17154605|emb|CAC83912.1| ribosomal protein S4 [Hesperoxiphion peruvianum] Length = 182 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 4/143 (2%) Query: 31 SYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLIS 90 S G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ Sbjct: 20 STGSVLKTQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQ 78 Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SK 148 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K SK Sbjct: 79 LLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKERSK 138 Query: 149 QLASVLEASQLAERDVPEYISVN 171 L AS E ++P +++++ Sbjct: 139 VLIQNYIASSPHE-ELPNHLTID 160 >gi|63191747|gb|AAY34833.1| small ribosomal protein subunit 4 [Brachymitrion jamesonii] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KTSQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQAIIKKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLKNQGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|222103412|gb|ACM44235.1| small ribosomal protein subunit 4 [Tetraphis pellucida] gi|222103414|gb|ACM44236.1| small ribosomal protein subunit 4 [Tetraphis pellucida] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDRQKSQNVIAKNMDFSQKY 151 Query: 163 DVPEYISVN 171 +P ++++N Sbjct: 152 KIPNHLTLN 160 >gi|63191829|gb|AAY34874.1| small ribosomal protein subunit 4 [Calyptopogon mnioides] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 92 GMSPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|307828428|gb|ADN95011.1| small ribosomal protein 4 [Fossombronia truncata] Length = 190 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 29 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 88 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 146 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 147 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 188 >gi|284047202|ref|YP_003397542.1| ribosomal protein S4 [Conexibacter woesei DSM 14684] gi|283951423|gb|ADB54167.1| ribosomal protein S4 [Conexibacter woesei DSM 14684] Length = 210 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 15/215 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSY-------GPGLHGQRRKSKPSYFGLQLR 53 M + K+ RR G +L + + +N +S PG HG R+ + S + QLR Sbjct: 1 MGRYTGPVEKLSRREGVDLCLKGERRLNGKSALERRGPQPPGQHGNARRRRESVYAEQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 KQK K+YYG + EK+FR A + R G L+ LE RLD +VYR T A Sbjct: 61 EKQKAKRYYG-VREKQFRRYVAAATKKREGVVGEQLLQLLEQRLDNVVYRLGLASTRPQA 119 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVN 171 RQFV H HVLVNG+ +I S + K GDV+ V ++ + S + Q+ V ++ + Sbjct: 120 RQFVGHGHVLVNGQRCDIASRQVKPGDVVMVAPEAAIRPVSTVATEQMGR--VGAWLEAD 177 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D++ +R+P ++ PV Q L+VEFYSR Sbjct: 178 FDSLAGKVLRLPVR-NEIDAPVAEQ--LIVEFYSR 209 >gi|26421757|gb|AAN78137.1| ribosomal protein S4 [Tortula muralis] gi|26421759|gb|AAN78138.1| ribosomal protein S4 [Tortula muralis] gi|26421761|gb|AAN78139.1| ribosomal protein S4 [Tortula muralis] gi|26421763|gb|AAN78140.1| ribosomal protein S4 [Tortula muralis] gi|26421765|gb|AAN78141.1| ribosomal protein S4 [Tortula muralis] gi|26421767|gb|AAN78142.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRLVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|20531111|gb|AAM27376.1| ribosomal protein 4 [Encalypta streptocarpa] Length = 191 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNECIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIDFSQKF 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S + +I L + + LVVE+YSR Sbjct: 149 KVPNHLSFDTLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|16565355|gb|AAL26196.1|AF313589_1 small ribosomal protein 4 [Danaea elliptica] gi|184127921|gb|ACC67860.1| ribosomal protein small subunit 4 [Danaea elliptica] Length = 198 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 32/195 (16%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK S + ++L AKQ+++ YG ++E++ + A +++ Sbjct: 12 PGLTTKTLKSKESQIAMDPASKKISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R P+I AARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNILFRLGMSPSIPAARQLVNHRHILVNNRLVDIPSYRCKPKDII 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYI--SVNHD-------NMVATFVRIPSSLKDVPY 191 V+ ++ + V + + +D +PE++ S+ D N + T I ++ ++ Sbjct: 131 NVRNQTNSQSLVKRSLESLNKDKIPEHLTFSLLEDDKPQGLVNKIVTRDSIGLNINEL-- 188 Query: 192 PVIMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 189 -------LVVEYYSR 196 >gi|63191859|gb|AAY34889.1| small ribosomal protein subunit 4 [Pseudosymblepharis guatemalensis] Length = 199 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 197 >gi|17154475|emb|CAC83914.1| ribosomal protein S4 [Cipura campanulata] Length = 182 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD ++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNTIFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKVL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNYIASSPHE-ELPNHLTID 160 >gi|12642220|gb|AAK00192.1| rps4 [Encalypta ciliata] gi|67035736|gb|AAY62799.1| small ribosomal protein subunit 4 [Encalypta ciliata] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PT+ ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 87 GMAPTVPGARQLVNHRHILVNNCIVNIPSYRCKPQDFISIKDRQKSQAIIIKNLDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S + +I L + + LVVE+YSR Sbjct: 147 KVPNHLSFDSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|3914866|sp|O36051|RR4_NEOSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292976|emb|CAA92545.1| ribosomal protein S4 [Neomarica sp. 'Lejeune 1997'] Length = 182 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKERSKVL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNYIASSPHE-ELPNHLTID 160 >gi|307828432|gb|ADN95013.1| small ribosomal protein 4 [Fossombronia pusilla] Length = 184 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 23 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 82 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIARSMSLFQKA 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 142 KTPNHLTLDSTRLRGS---INQTIDRDWINLKINELLVVEYYSR 182 >gi|293633973|gb|ADE60366.1| ribosomal protein subunit 4 [Atrichum flavisetum] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAIITRNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 187 >gi|162415118|gb|ABX89133.1| ribosomal protein S4 [Bryoerythrophyllum inaequalifolium] Length = 188 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKRGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|12330452|gb|AAG52763.1| ribosomal protein 4 [Takakia lepidozioides] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y ++L KQK++ ++G ++E++ + A R++ Sbjct: 6 PGLTNKTPQSKSGYINQSTSNKKISQYRIRLEEKQKLRFHHG-VTERQLLKYVRIARRAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD +++R PTI ARQ VNHRH+LVN R+VNI S+RCK D I Sbjct: 65 GSTGQVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRTVNIPSFRCKPQDFI 124 Query: 142 EVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 K + K A + ++ SQ +E +P ++++N +I + + + Sbjct: 125 TTKDRQKSQAVITKNMDCSQKSE--MPNHLTLNSSQKRGLVNQI---IDRESIGLKINEL 179 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 180 LVVEYYSR 187 >gi|28194781|gb|AAO33652.1|AF481007_1 ribosomal protein S4 [Crossidium seriatum] gi|28194783|gb|AAO33653.1|AF481008_1 ribosomal protein S4 [Crossidium seriatum] gi|28194791|gb|AAO33657.1|AF481012_1 ribosomal protein S4 [Tortula muralis] gi|28194795|gb|AAO33659.1|AF481014_1 ribosomal protein S4 [Tortula israelis] gi|28194797|gb|AAO33660.1|AF481015_1 ribosomal protein S4 [Tortula muralis] gi|28194801|gb|AAO33662.1|AF481017_1 ribosomal protein S4 [Tortula muralis var. obcordata] gi|28194803|gb|AAO33663.1|AF481018_1 ribosomal protein S4 [Tortula muralis] gi|28194805|gb|AAO33664.1|AF481019_1 ribosomal protein S4 [Tortula muralis] gi|28194807|gb|AAO33665.1|AF481020_1 ribosomal protein S4 [Tortula muralis] gi|28194809|gb|AAO33666.1|AF481021_1 ribosomal protein S4 [Tortula muralis] gi|28194811|gb|AAO33667.1|AF481022_1 ribosomal protein S4 [Tortula muralis] gi|28194813|gb|AAO33668.1|AF481023_1 ribosomal protein S4 [Tortula muralis] gi|28194823|gb|AAO33673.1|AF481028_1 ribosomal protein S4 [Tortula muralis] gi|28194825|gb|AAO33674.1|AF481029_1 ribosomal protein S4 [Tortula muralis] gi|28194843|gb|AAO33683.1|AF481038_1 ribosomal protein S4 [Tortula israelis] gi|28194845|gb|AAO33684.1|AF481039_1 ribosomal protein S4 [Tortula muralis] gi|28194847|gb|AAO33685.1|AF481040_1 ribosomal protein S4 [Tortula muralis var. aestiva] gi|28194849|gb|AAO33686.1|AF481041_1 ribosomal protein S4 [Tortula muralis] Length = 196 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|63191783|gb|AAY34851.1| small ribosomal protein subunit 4 [Atrichum undulatum] Length = 190 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAIITRNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 188 >gi|3914873|sp|O47029|RR4_NAROD RecName: Full=30S ribosomal protein S4, chloroplastic gi|2808630|emb|CAA58940.1| ribosomal protein S4 [Narcissus x odorus] Length = 196 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLKNPLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K K + A + + A R ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSIASAPREELPNHLTID 167 >gi|262192902|gb|ACY30468.1| small ribosomal subunit protein 4 [Pohlia nutans] Length = 188 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 186 >gi|77862545|gb|ABB04545.1| small ribosomal protein 4 [Neohodgsonia mirabilis] Length = 201 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 104/188 (55%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINDNTVDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + V + + ++ +P +++ + + F + + + D + + ++ N Sbjct: 137 TIKNRQKSQSIVTKNLNSFQKQKIPNHLNFD----LIQFKGLVNQIIDREW-IYLKINEL 191 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 192 LVVEYYSR 199 >gi|26421769|gb|AAN78143.1| ribosomal protein S4 [Tortula muralis] gi|26421771|gb|AAN78144.1| ribosomal protein S4 [Tortula muralis] gi|26421775|gb|AAN78146.1| ribosomal protein S4 [Tortula muralis] gi|26421777|gb|AAN78147.1| ribosomal protein S4 [Tortula muralis] gi|26421779|gb|AAN78148.1| ribosomal protein S4 [Tortula muralis] gi|26421787|gb|AAN78152.1| ribosomal protein S4 [Tortula muralis] gi|26421791|gb|AAN78154.1| ribosomal protein S4 [Tortula muralis] gi|26421793|gb|AAN78155.1| ribosomal protein S4 [Tortula muralis] gi|26421795|gb|AAN78156.1| ribosomal protein S4 [Tortula muralis] gi|26421799|gb|AAN78158.1| ribosomal protein S4 [Tortula muralis] gi|26421801|gb|AAN78159.1| ribosomal protein S4 [Tortula muralis] gi|26421803|gb|AAN78160.1| ribosomal protein S4 [Tortula muralis] gi|26421805|gb|AAN78161.1| ribosomal protein S4 [Tortula muralis] gi|26421811|gb|AAN78164.1| ribosomal protein S4 [Tortula muralis] gi|26421813|gb|AAN78165.1| ribosomal protein S4 [Tortula muralis] gi|26421815|gb|AAN78166.1| ribosomal protein S4 [Tortula muralis] gi|26421817|gb|AAN78167.1| ribosomal protein S4 [Tortula muralis] gi|26421819|gb|AAN78168.1| ribosomal protein S4 [Tortula muralis] gi|26421821|gb|AAN78169.1| ribosomal protein S4 [Tortula freibergii] gi|26421823|gb|AAN78170.1| ribosomal protein S4 [Tortula freibergii] Length = 195 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|28194769|gb|AAO33646.1|AF481001_1 ribosomal protein S4 [Tortula canescens] gi|28194771|gb|AAO33647.1|AF481002_1 ribosomal protein S4 [Tortula canescens] Length = 196 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|78369631|gb|ABB43045.1| ribosomal protein 4 [Calymperes palisotii] Length = 196 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 94 GIAPTISGARQLVNHRHILVNNRIVNIPSYKCKPQDFITIKDQQKYQTMIIKNINFSPKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKVNELLVVEYYSR 194 >gi|22854725|gb|AAN09782.1| small ribosomal protein 4 [Mesotus celatus] Length = 188 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 27 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 146 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 186 >gi|17154626|emb|CAC83925.1| ribosomal protein S4 [Moraea sisyrinchium] Length = 182 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD Sbjct: 28 QLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEA 156 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L A Sbjct: 87 ILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIA 146 Query: 157 SQLAERDVPEYISVN 171 S E ++P +++++ Sbjct: 147 SSPQE-ELPNHLTID 160 >gi|12330462|gb|AAG52768.1| ribosomal protein 4 [Tetraphis geniculata] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDRQKSQNVIAKNMDFSQKY 146 Query: 163 DVPEYISVN 171 +P ++++N Sbjct: 147 KIPNHLTLN 155 >gi|20531088|gb|AAM27365.1| ribosomal protein 4 [Diphyscium fasciculatum] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K V++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQDIVVKNMDFSQKY 151 Query: 163 DVPEYISVN 171 +P +++++ Sbjct: 152 KIPNHLTLD 160 >gi|83940939|gb|ABC48866.1| rps4 [Sinojackia huangmeiensis] gi|83940941|gb|ABC48867.1| rps4 [Sinojackia rehderiana] gi|83940943|gb|ABC48868.1| rps4 [Sinojackia microcarpa] gi|83940949|gb|ABC48871.1| rps4 [Sinojackia xylocarpa] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GTDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + + K A Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITARDEQKSRAL 140 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + + S +H+ + P K + +I + LVVE+Y Sbjct: 141 IQNS----------FDSSHHEELPKHLTLYPFQYKGLVNQIIDSKWIGLKINELLVVEYY 190 Query: 205 SR 206 SR Sbjct: 191 SR 192 >gi|307828381|gb|ADN94989.1| small ribosomal protein 4 [Fossombronia truncata] Length = 187 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 143 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 144 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 185 >gi|184127927|gb|ACC67863.1| ribosomal protein small subunit 4 [Danaea nodosa] Length = 199 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 P+I AARQ VNHRH+LVN R V+I SYRCK D+I V+ ++ + V + ++D Sbjct: 94 GMSPSIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIINVRNQTNSHSLVKRNLESLDKD 153 Query: 164 -VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ D+ V + + + LVVE+YSR Sbjct: 154 KIPEHLTLSLLEDDKPQGLVNKIVTRDSIGLNI--NELLVVEYYSR 197 >gi|184127923|gb|ACC67861.1| ribosomal protein small subunit 4 [Danaea leprieurii] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 32/195 (16%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK S + ++L AKQ+++ YG ++E++ + A +++ Sbjct: 3 PGLTTKTLKSKESQIAMDPASKKISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R P+I AARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 62 GSTGQVLLQLLEMRLDNILFRLGMSPSIPAARQLVNHRHILVNNRLVDIPSYRCKPKDII 121 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYI--SVNHD-------NMVATFVRIPSSLKDVPY 191 V+ ++ + V + + +D +PE++ S+ D N + T I ++ ++ Sbjct: 122 NVRNQTNSQSLVKRSLESLNKDKIPEHLTFSLLEDDKPQGLVNKIVTRDSIGLNINEL-- 179 Query: 192 PVIMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 180 -------LVVEYYSR 187 >gi|162415082|gb|ABX89115.1| ribosomal protein S4 [Hilpertia velenovskyi] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMISKNVDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|140083435|gb|ABO84829.1| ribosomal protein S4 [Pulchrinodus inflatus] Length = 187 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 85 GMSPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIITKNIDFYQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTYNSLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|26421781|gb|AAN78149.1| ribosomal protein S4 [Tortula vahliana] gi|26421783|gb|AAN78150.1| ribosomal protein S4 [Tortula vahliana] gi|26421785|gb|AAN78151.1| ribosomal protein S4 [Tortula vahliana] gi|26421807|gb|AAN78162.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|63191773|gb|AAY34846.1| small ribosomal protein subunit 4 [Polytrichastrum alpinum] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 92 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 192 >gi|63191701|gb|AAY34812.1| small ribosomal protein subunit 4 [Pulchrinodus inflatus] Length = 194 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 92 GMSPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIITKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|18860313|ref|NP_569631.1| ribosomal protein S4 [Psilotum nudum] gi|26399157|sp|Q95CA6|RR4_PSINU RecName: Full=30S ribosomal protein S4, chloroplastic gi|18389466|dbj|BAB84218.1| ribosomal protein S4 [Psilotum nudum] Length = 199 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 Q K S + L+L AKQ+++ YG ++E++ A ++RG T L+ LE RLD Sbjct: 29 SQSTSKKRSQYSLRLEAKQRLRFNYG-VTERQLLKYVCIAKKARGSTGQVLLQLLEMRLD 87 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 I++R PTI ARQ VNHRH+LVN + V+I SYRCK D+I V+ K + Sbjct: 88 NIIFRLGLSPTIPGARQLVNHRHILVNDQIVDIPSYRCKPNDIITVRDHQKSQELIKRNI 147 Query: 158 QLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +LA+ D +P ++++++ I + + + LVVE+YSR Sbjct: 148 KLAKIDEIPSHLNISYLEETKPKGFINKIVDRGSIGLEINELLVVEYYSR 197 >gi|293633989|gb|ADE60374.1| ribosomal protein subunit 4 [Lyellia aspera] Length = 183 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 81 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIAKNIDFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLEQKGLVNQI---LDRESIGLKINELLVVEYYSR 181 >gi|255020792|ref|ZP_05292850.1| SSU ribosomal protein S4p (S9e) [Acidithiobacillus caldus ATCC 51756] gi|254969788|gb|EET27292.1| SSU ribosomal protein S4p (S9e) [Acidithiobacillus caldus ATCC 51756] Length = 159 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/166 (40%), Positives = 97/166 (58%), Gaps = 13/166 (7%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S +G QLR KQK+++ YG + E +FR F+ A ++RG T L+ FLE RLD + YR + Sbjct: 2 SEYGTQLREKQKIRRIYG-VLEGQFRRYFERASQTRGVTGELLLRFLELRLDNVAYRLGY 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLAERDV 164 + ARQ V H H+ VNGR V+I SY+ + GDV+ V + ++Q A +L A R Sbjct: 61 GSSRAEARQVVRHGHITVNGRRVDIPSYQVRAGDVVAVAESARQHARILAAVEAAAARGF 120 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL----VVEFYSR 206 PE++SV+ N+ AT +K VP M P+L VVE YS+ Sbjct: 121 PEWLSVDSANLQAT-------VKAVPVREDMAPDLNEQVVVELYSK 159 >gi|42718066|gb|AAS38455.1| rps4 [Brachymitrion jamesonii] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KTSQYRIRLXEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQAIIKKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKNQGLINQI---LDRESIGLKINELLVVEYYSR 187 >gi|42718098|gb|AAS38471.1| rps4 [Tetraplodon angustatus] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIINKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|3914851|sp|O20230|RR4_HYMLI RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292886|emb|CAA92549.1| ribosomal protein S4 [Hymenocallis littoralis] Length = 182 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLKNPLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVQIARKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K + A Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 153 VLEASQLAER-DVPEYISVN 171 + + A R ++P +++++ Sbjct: 141 IQNSIASAPREELPNHLTID 160 >gi|293634081|gb|ADE60420.1| ribosomal protein subunit 4 [Polytrichastrum altaicum] gi|293634091|gb|ADE60425.1| ribosomal protein subunit 4 [Polytrichastrum norwegicum] Length = 189 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 187 >gi|190361235|gb|ACE76922.1| ribosomal protein small subunit 4 [Crepidomanes bipunctatum] Length = 167 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 12/163 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A R++G T L+ LE RLD IV+ Sbjct: 15 KVSQFRVRLEAKQRLRFNYGS-TERQLLRYVRIARRAKGSTGQVLLQLLEMRLDNIVFNL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 + PTI AARQ VNHRH+LVN R V+I SYRCK D+I +K + + E+ Sbjct: 74 RMAPTIRAARQLVNHRHILVNNRLVDIPSYRCKPKDLITLKNR-----------EFLEKK 122 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++++ + + + + LVVE+YSR Sbjct: 123 VPDHLALSFSESKEPKGLVNGIVNRESIDLNINELLVVEYYSR 165 >gi|32401824|gb|AAP80900.1| small ribosomal protein 4 [Rubus odoratus] Length = 184 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GNDLRTQSRPGKKSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKSK L Sbjct: 71 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITXRDEQKSKAL 130 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 131 IQNHLDSS--PPEELPKHLTLHPLQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|26421825|gb|AAN78171.1| ribosomal protein S4 [Tortula marginata] Length = 195 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|63191789|gb|AAY34854.1| small ribosomal protein subunit 4 [Tetraphis pellucida] Length = 190 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDRQKSQNVIAKNMDFSQKY 147 Query: 163 DVPEYISVN 171 +P ++++N Sbjct: 148 KIPNHLTLN 156 >gi|28194815|gb|AAO33669.1|AF481024_1 ribosomal protein S4 [Tortula muralis] gi|28194817|gb|AAO33670.1|AF481025_1 ribosomal protein S4 [Tortula muralis] gi|28194819|gb|AAO33671.1|AF481026_1 ribosomal protein S4 [Tortula muralis] gi|28194821|gb|AAO33672.1|AF481027_1 ribosomal protein S4 [Tortula muralis] Length = 196 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|16565397|gb|AAL26213.1|AF313613_1 small ribosomal protein 4 [Austrobaileya scandens] Length = 190 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 18 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ--- 149 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + + Sbjct: 77 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRLVDIPSYRCKPRDIITTKDEHRSRTL 136 Query: 150 LASVLEASQLAERDVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFY 204 + + +++S ++P+++ S+ + +V V D + V ++ N LVVE+Y Sbjct: 137 IQNYIDSS--PHEELPKHLTLHSLQYKGLVNQIV-------DSQW-VGLKINELLVVEYY 186 Query: 205 SR 206 SR Sbjct: 187 SR 188 >gi|3914859|sp|O20265|RR4_NERBO RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292972|emb|CAA92550.1| ribosomal protein S4 [Nerine bowdenii] Length = 182 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLQNPLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIARKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNFIASSPHE-ELPNHLTID 160 >gi|254995569|emb|CAO82743.1| ribosomal protein S4 [Lycopodium annotinum] Length = 172 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ A + + ++ ++ Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRSESRAIIAKNNKFSQTY 129 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + S + + LVVE+YSR Sbjct: 130 KIPNHLTLHSLQNKGLVNKIIDRES------IDLNINELLVVEYYSR 170 >gi|107770436|gb|ABF83759.1| small ribosomal protein 4 [Torreya grandis] Length = 198 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 4/129 (3%) Query: 38 GQRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 G+R+ SKP S + + L+ KQ+++ +YG ++E++ + A R+ G T L+ LE Sbjct: 23 GKRKHSKPPKPSKYPVCLKEKQRLRFHYG-LTERQLLQYVRIARRANGPTGQVLLQLLEM 81 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLDTI++R TI ARQ VNHRH+LVN R V+I SYRCK D+I +K + + + Sbjct: 82 RLDTIIFRLGMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSRNIIN 141 Query: 155 EASQLAERD 163 + L++RD Sbjct: 142 KNIDLSQRD 150 >gi|42794632|gb|AAS45715.1| Rps4 [Cavendishia capitulata] Length = 211 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 97/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK+ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLGFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ V HRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVTHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKSKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|222103520|gb|ACM44289.1| small ribosomal protein subunit 4 [Polytrichum juniperinum] Length = 196 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 94 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 194 >gi|118577540|gb|ABL07136.1| small ribosomal protein 4 [Peperomia dolabriformis] Length = 183 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 13/186 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 6 KRPVSESS----LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRHVLVNG V+I SYRCK D+I Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGHIVDIPSYRCKPRDIITT 120 Query: 144 KQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LV 200 + K V + A R ++P++++++ + + I + + D + V ++ N LV Sbjct: 121 RNAQKSKILVQNSMDSASREELPKHLTLDS----SQYKGIVNQIIDNKW-VGLKINELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|17154601|emb|CAC83823.1| ribosomal protein S4 [Gelasine elongata] Length = 175 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 13/153 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S ++ L Q R K S + ++L KQK++ +YG ++E++ A +++ Sbjct: 11 RPRSGID-------LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 63 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 122 Query: 142 EVKQKSKQLASVLEASQLA---ERDVPEYISVN 171 K K + + VL + +A ++P +++++ Sbjct: 123 TTKDKER--SKVLIQNYIASSPHEELPNHLTID 153 >gi|28194851|gb|AAO33687.1|AF481042_1 ribosomal protein S4 [Tortula vahliana] Length = 196 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|37960573|gb|AAP70656.1| small ribosomal protein 4 [Sphagnum affine] gi|37960609|gb|AAP70674.1| small ribosomal protein 4 [Sphagnum steerei] Length = 195 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTSKTPQSKSNYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 131 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37960585|gb|AAP70662.1| small ribosomal protein 4 [Sphagnum cyclophyllum] Length = 191 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG I+E++ + A R++ Sbjct: 8 PGLTSKTPQSKSSYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 67 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 126 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + + A + + + P +++++ + +I + + + LV Sbjct: 127 TIKDRQESQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|85001771|gb|ABC68423.1| small ribosomal protein 4 [Goniomitrium seroi] gi|85001773|gb|ABC68424.1| small ribosomal protein 4 [Goniomitrium seroi] Length = 196 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +V+R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNVVFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRHVLVN V+I SYRCK D I +K + K A + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPQDFITIKNRQKSQAIITKNINFSQKY 153 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ SV +V + R LK + LVVE+YSR Sbjct: 154 KVPNHLTFDSVQKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|83940935|gb|ABC48864.1| rps4 [Sinojackia sarcocarpa] Length = 193 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GTDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + + K A Sbjct: 80 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITARDEQKSRAL 139 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + + S +H+ + P K + +I + LVVE+Y Sbjct: 140 IQNS----------FDSSHHEELPKHLTLYPFQYKGLVNQIIDSKWIGLKINELLVVEYY 189 Query: 205 SR 206 SR Sbjct: 190 SR 191 >gi|293634085|gb|ADE60422.1| ribosomal protein subunit 4 [Polytrichastrum emodi] Length = 192 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 190 >gi|184127929|gb|ACC67864.1| ribosomal protein small subunit 4 [Danaea nodosa] Length = 190 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 20/173 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 P+I AARQ VNHRH+LVN R V+I SYRCK D+I V+ ++ + V + ++D Sbjct: 85 GMSPSIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIINVRNQTNSHSLVKRNLESLDKD 144 Query: 164 -VPEYISVN--HD-------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ D N + T I ++ ++ LVVE+YSR Sbjct: 145 KIPEHLTLSLLEDDKPQGLVNKIVTRDSIGLNINEL---------LVVEYYSR 188 >gi|67035714|gb|AAY62788.1| small ribosomal protein subunit 4 [Leucophanes mayottense] Length = 197 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G ++ ++ K S + ++L KQK++ +YG ++E++ Sbjct: 3 KILRRLG-TLSGLSNKTPQLKASSISINQSISNKKISQYRIRLEEKQKLRFHYG-LTERQ 60 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VN Sbjct: 61 LLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVNNRIVN 120 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD--NMVATFVRIPSSLK 187 I SY CK D I +K + K +++ + P+Y + NH N V + L Sbjct: 121 IPSYHCKPQDFITIKDQQKYQTMIVKNTNF----FPKYKTPNHLIFNSVEKKGLVNQILD 176 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 QESIGLKINELLVVEYYSR 195 >gi|91214131|ref|YP_538753.1| ribosomal protein S4 [Glycine max] gi|90101669|sp|Q2PMU5|RR4_SOYBN RecName: Full=30S ribosomal protein S4, chloroplastic gi|83595732|gb|ABC25113.1| ribosomal protein S4 [Glycine max] Length = 201 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 7/173 (4%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R SK S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 32 LRNQSRSSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV 153 LD I++R TI ARQ +NHRHVLVNG V+I SYRCK D+I K QKSK L Sbjct: 91 LDNILFRLGMAATIPQARQLINHRHVLVNGHIVDIPSYRCKPQDIITAKDEQKSKTLIQN 150 Query: 154 LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E+ +P +++++ +I + + + + LVVE+YSR Sbjct: 151 YLDSAPREK-LPNHLTLHPFQYKGLINQI---IDNKWVGLKINELLVVEYYSR 199 >gi|307828426|gb|ADN95010.1| small ribosomal protein 4 [Fossombronia truncata] Length = 185 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 24 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 83 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 141 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 142 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 183 >gi|307828379|gb|ADN94988.1| small ribosomal protein 4 [Fossombronia truncata] Length = 190 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 29 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 88 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 146 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 147 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 188 >gi|289599943|gb|ADD12922.1| ribosomal protein S4 [Hibbertia sphenandra] Length = 167 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 23/178 (12%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEA 156 I++R TI ARQ VNH+H+LVN R V+I SYRCK D+I VK KS+ L Sbjct: 60 ILFRLGMASTIPGARQLVNHKHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNFLG 119 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI------MQPN--LVVEFYSR 206 S L E ++P+++++ P K + +I +Q N LVVE+YSR Sbjct: 120 SSLHE-ELPKHLTLQ-----------PFQYKGLVNQIIDSKWIGLQINELLVVEYYSR 165 >gi|289599903|gb|ADD12902.1| ribosomal protein S4 [Hibbertia commutata] Length = 167 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 3 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 61 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 62 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 121 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P+Y++++ +I S K V + LVVE+YSR Sbjct: 122 --SHEELPKYLTLHAFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 165 >gi|78369605|gb|ABB43032.1| ribosomal protein 4 [Syrrhopodon tristichus] Length = 199 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTSF---- 152 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 153 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|67035716|gb|AAY62789.1| small ribosomal protein subunit 4 [Arthrocormus schimperi] Length = 199 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQKMIIKNTSF---- 152 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 153 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|322719521|gb|ADX07697.1| small ribosomal protein subunit 4 [Racomitrium subsecundum] gi|322719523|gb|ADX07698.1| small ribosomal protein subunit 4 [Racomitrium subsecundum] gi|322719525|gb|ADX07699.1| small ribosomal protein subunit 4 [Racomitrium subsecundum] Length = 198 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKDRQKSQAMIMKNIDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LNRESIGLKINELLVVEYYSR 196 >gi|254995571|emb|CAO82744.1| ribosomal protein S4 [Lycopodium casuarinoides] Length = 172 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +G++L KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 11 KFSQYGIRLEEKQKLRFHYG-LTEQQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + + + A + + + + Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRPESRAIIAKNEKFYQTC 129 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + S + + LVVE+YSR Sbjct: 130 KIPNHLTLDSLQNKGLVNKIIDRES------IDLNINELLVVEYYSR 170 >gi|293612014|gb|ADE48451.1| ribosomal protein 4 [Microcycas calocoma] Length = 176 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 74 GMAPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIDKNLDLSQKD 133 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 134 QMPNHLTLHSSRYKGLVNQIIDS-KWINLKI--NELLVVEYYSR 174 >gi|218157227|gb|ACK58430.1| ribosomal protein subunit 4 [Polytrichastrum alpinum] gi|293634073|gb|ADE60416.1| ribosomal protein subunit 4 [Polytrichastrum alpinum] gi|293634089|gb|ADE60424.1| ribosomal protein subunit 4 [Polytrichastrum norwegicum] Length = 187 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 185 >gi|24473826|gb|AAL82756.1| small ribosomal subunit protein 4 [Rhodobryum roseum] Length = 187 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRC+ D I +K + K A + + L ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCRPEDSITIKDRQKSQAIISKNLNLYQK- 143 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 144 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 185 >gi|83940947|gb|ABC48870.1| rps4 [Sinojackia oblongicapra] Length = 193 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 19/182 (10%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GTDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 79 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + + K A Sbjct: 80 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITARDEQKSRAL 139 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFY 204 + + + S +H+ + P K + +I + LVVE+Y Sbjct: 140 IQNS----------FDSSHHEELPKHLTLYPFQYKGLVNQIIDSKWIGLKINELLVVEYY 189 Query: 205 SR 206 SR Sbjct: 190 SR 191 >gi|293634093|gb|ADE60426.1| ribosomal protein subunit 4 [Polytrichastrum norwegicum] gi|293634099|gb|ADE60429.1| ribosomal protein subunit 4 [Polytrichastrum papillatum] Length = 185 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 183 >gi|3098158|gb|AAC15527.1| small ribosomal protein 4 [Wardia hygrometrica] Length = 199 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R +NI SYRCK D I +K + K +++ +++ Sbjct: 97 GMTSTIPGARQLVNHRHILVNNRIINIPSYRCKPRDFITIKDRQKSQVMIIKNIDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|3098156|gb|AAC15526.1| small ribosomal protein 4 [Blindia acuta] Length = 189 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I E+ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-IXERXLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D +K + K A V++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFFTIKDRQKSQAMVIKNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 147 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 187 >gi|307828417|gb|ADN95006.1| small ribosomal protein 4 [Fossombronia truncata] Length = 188 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 27 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 86 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 144 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 145 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 186 >gi|293611966|gb|ADE48427.1| ribosomal protein 4 [Cycas clivicola] gi|293611968|gb|ADE48428.1| ribosomal protein 4 [Cycas guizhouensis] gi|293611970|gb|ADE48429.1| ribosomal protein 4 [Cycas hainanensis] gi|293611974|gb|ADE48431.1| ribosomal protein 4 [Cycas panzhihuaensis] gi|293611976|gb|ADE48432.1| ribosomal protein 4 [Cycas siamensis] Length = 183 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSRNDPTNQSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 60 STGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 120 IRDQRRSRAMIGKNLDLSQKDQMPNHLTLHSSQYKGLVNQIIDS-KWISLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|184127925|gb|ACC67862.1| ribosomal protein small subunit 4 [Danaea nodosa] Length = 180 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 16 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 P+I AARQ VNHRH+LVN R V+I SYRCK D+I V+ ++ + V + ++D Sbjct: 75 GMSPSIPAARQLVNHRHILVNNRLVDIPSYRCKPKDIINVRNQTNSHSLVKRNLESLDKD 134 Query: 164 -VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ D+ V + + + LVVE+YSR Sbjct: 135 KIPEHLTLSLLEDDKPQGLVNKIVTRDSIGLNI--NELLVVEYYSR 178 >gi|37548873|gb|AAO32705.1| ribosomal protein 4 [Polytrichadelphus pseudopolytrichum] Length = 192 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 190 >gi|11878077|gb|AAG40786.1| small ribosomal protein 4 [Tetraphis pellucida] gi|12330460|gb|AAG52767.1| ribosomal protein 4 [Tetraphis pellucida] Length = 186 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDRQKSQNVIAKNMDFSQKY 143 Query: 163 DVPEYISVN 171 +P ++++N Sbjct: 144 KIPNHLTLN 152 >gi|17154609|emb|CAC83916.1| ribosomal protein S4 [Ennealophus euryandrus] Length = 176 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 13/153 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S ++ L Q R K S + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 RPRSGID-------LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 64 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 123 Query: 142 EVKQKSKQLASVLEASQLA---ERDVPEYISVN 171 K K + + VL + +A ++P +++++ Sbjct: 124 TTKDKER--SKVLIQNYIASSPHEELPNHLTID 154 >gi|15145850|gb|AAK83543.1| rps4 [Tayloria solitaria] Length = 189 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFINIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|28194799|gb|AAO33661.1|AF481016_1 ribosomal protein S4 [Tortula muralis] Length = 196 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|307602393|gb|ADN68078.1| ribosomal protein S4 [Tetraclinis articulata] Length = 189 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + ++ ++D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKEGLRNIIKKNIEIFQKD 142 Query: 164 ---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + V+ K + + LVVE+YSR Sbjct: 143 KMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|293634077|gb|ADE60418.1| ribosomal protein subunit 4 [Polytrichastrum alpinum] Length = 188 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 186 >gi|32401806|gb|AAP80891.1| small ribosomal protein 4 [Pachysandra procumbens] Length = 187 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 15/179 (8%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 17 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 75 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LV GR V I SYRCK D+I K + K A Sbjct: 76 EMRLDNILFRLGMASTIPGARQLVNHRHILVXGRIVXIPSYRCKPRDIITAKDEQKSXAL 135 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S ++P++++++ +F + + + D + V ++ N LVV +YSR Sbjct: 136 IQNYLDSS--PHEELPKHLTLH------SFQGLVNQIIDSKW-VGLKINELLVVXYYSR 185 >gi|85001769|gb|ABC68422.1| small ribosomal protein 4 [Goniomitrium acuminatum] Length = 196 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +V+R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNVVFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRHVLVN V+I SYRCK D I +K + K A + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPQDFITIKNRQKSQAIITKNIDFSQKY 153 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ SV +V + R LK + LVVE+YSR Sbjct: 154 KVPNHLTFDSVQKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|157689484|gb|ABV65298.1| ribosomal protein S4 [Helianthemum grandiflorum] Length = 176 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 98/171 (57%), Gaps = 17/171 (9%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 14 GKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 72 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVN R V+I SY CK GD+I V+ QKSK L S + Sbjct: 73 LGMASTIPQARQLVNHRHILVNDRIVDIPSYGCKPGDIISVRAEQKSKTLIQNYLDSSIP 132 Query: 161 ERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++ VP++++V + +V + S V +Q N LVVE+YSR Sbjct: 133 KK-VPKHLTVRTLQYKGLVNQIINRKS--------VGLQINELLVVEYYSR 174 >gi|49182730|gb|AAT57827.1| small ribosomal protein [Jubula hutchinsiae subsp. pennsylvanica] Length = 195 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGRASKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI +ARQ VNHRH+ +N +VN+ SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPSARQLVNHRHIFINNYTVNVPSYNCEPGDII 130 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K QL + + ++P ++ N + FV +++ + + LV Sbjct: 131 TIKNREKSQLIITKNINSFQKLEIPNHLIFNSIKLQG-FVN--QTIRRESIDLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|17154603|emb|CAC83911.1| ribosomal protein S4 [Geissorhiza heterostyla] Length = 174 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K + A Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKNKQRSKAL 132 Query: 153 V---LEASQLAERDVPEYISVN 171 + +++S E +P +++++ Sbjct: 133 IQNFIDSSPQGE--LPNHLTID 152 >gi|3098184|gb|AAC15540.1| small ribosomal protein 4 [Pohlia cruda] Length = 198 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYRKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 196 >gi|293634075|gb|ADE60417.1| ribosomal protein subunit 4 [Polytrichastrum alpinum] gi|293634079|gb|ADE60419.1| ribosomal protein subunit 4 [Polytrichastrum alpinum] Length = 186 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 184 >gi|293634031|gb|ADE60395.1| ribosomal protein subunit 4 [Pogonatum cirratum] Length = 193 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 1 KIIRRLGALPGLTNKTPQLKSGY---INQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VN Sbjct: 57 LLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D+I +K + + A + + +++ +P +++ N + +I L Sbjct: 117 IPSYRCKPQDLITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLDKKGLVNQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|118627516|emb|CAL39392.1| small ribosomal protein 4 [Anastrophyllum saxicola] Length = 202 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNNTVDISSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|67035837|gb|AAY62845.1| small ribosomal protein subunit 4 [Clastobryophilum bogoricum] Length = 202 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + E+ Sbjct: 100 DMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSKAIISKNIEFYEKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 200 >gi|46811064|gb|AAT01850.1| small ribosomal protein 4 [Xenothallus vulcanicola] Length = 175 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD IV+R Sbjct: 14 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AER 162 PTI +ARQ VNHRH++VN +VNI SY CK DVI +K + + + + + L ER Sbjct: 73 GMAPTIPSARQLVNHRHIIVNDNAVNIPSYNCKPQDVITIKDRRESQSVITKNINLFRER 132 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + +I SLK + LVVE+YSR Sbjct: 133 KIPNHLTFDSTRFCGSVNQIIDREWISLK-------INELLVVEYYSR 173 >gi|42556448|gb|AAS19819.1| small ribosomal protein 4 [Lepidolaena clavigera] Length = 191 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 102/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL ++ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKKIKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+L+N +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHRHILINNETVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + + + + ++P ++++N + + I +++ + + LV Sbjct: 127 TIRNREKSQSIITKNINSFHKSEIPNHLTLNSTQLRGS---INTTIHREWIDLKVNELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67035578|gb|AAY62720.1| small ribosomal protein subunit 4 [Glyphomitrium daviesii] Length = 153 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 5/153 (3%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ Sbjct: 3 KQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQ 61 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHD 173 VNH+H+LVN VNI SYRCK D I +K + K A +++ +E+ VP +++ N Sbjct: 62 LVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSEKTKVPNHLTFNSL 121 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 122 EKKGLVNQI---LDQESIGLKINELLVVEYYSR 151 >gi|222103450|gb|ACM44254.1| small ribosomal protein subunit 4 [Sphagnum subsecundum] Length = 181 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 20 KVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-R 162 PTI ARQ VNHRH+LVN +VNI SYRCK D I +K + K A + + + Sbjct: 79 GMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + +I + + + LVVE+YSR Sbjct: 139 KTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLVVEYYSR 179 >gi|157689430|gb|ABV65271.1| ribosomal protein S4 [Bulnesia arborea] Length = 200 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 36/220 (16%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ TR+ Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPKAKTITRN-------QSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ +E RLD I++R TI ARQFV Sbjct: 53 KLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLIEMRLDNILFRLGMASTIPQARQFV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVN VNI SYRCK D+I V+ QKS+ L V Y+ + Sbjct: 112 NHRHILVNDHIVNIPSYRCKPRDIITVRDNQKSRTL-------------VQNYLDSPNQE 158 Query: 175 MVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 + P K + +I + LVVE+YSR Sbjct: 159 LAKHLTLQPFQYKGLVNQIIDSKWVGLRINELLVVEYYSR 198 >gi|15145854|gb|AAK83545.1| rps4 [Tayloria pseudoalpicola] Length = 189 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD IV+R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAKKAKGSTGEVLLQLLEMRLDNIVFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMXPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIINKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|67035632|gb|AAY62747.1| small ribosomal protein subunit 4 [Holomitrium arboreum] Length = 199 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VN+ SYRCK D I +K + K +++ +++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNNRIVNVPSYRCKPQDFITIKDRQKSQVMIIKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|139389952|ref|YP_001123552.1| ribosomal protein S4 [Draba nemorosa] gi|152060551|sp|A4QL21|RR4_DRANE RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286754|dbj|BAF50376.1| ribosomal protein S4 [Draba nemorosa] Length = 201 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 116/216 (53%), Gaps = 27/216 (12%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP++ + R+ Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRAGSDPRN-------QSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMALTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN--- 171 NH H+LVNGR V+I SYRCK D+I VK Q S+ L L S E ++P +++++ Sbjct: 112 NHGHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSTPE-ELPNHLTLHTFQ 170 Query: 172 HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +V + R LK + LVVE+YSR Sbjct: 171 YEGLVNQIIDRKCVGLK-------INELLVVEYYSR 199 >gi|6002035|emb|CAA58925.1| ribosomal protein S4 [Cocos nucifera] Length = 196 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPKS G L Q R K S + + L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPKS-------GSDLKTQLRSGKRSQYRICLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK +I KQ+SK L AS E ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRGIITTKDKQRSKALIQNYIASPPPE-ELPKHLTID 167 >gi|12642222|gb|AAK00193.1| rps4 [Funaria apophysata] Length = 191 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 25 QSAAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 84 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPDDSITVKNRQKSQAIITKNID 143 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 144 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|17154611|emb|CAC83917.1| ribosomal protein S4 [Galaxia sp. Goldblatt and Nanni 10254] Length = 182 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD Sbjct: 28 QLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEA 156 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L A Sbjct: 87 ILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIA 146 Query: 157 SQLAERDVPEYISVN 171 S E ++P +++++ Sbjct: 147 SSPHE-ELPNHLTID 160 >gi|66866239|gb|AAY57788.1| small ribosomal protein 4 [Leucolepis acanthoneura] Length = 204 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + D Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMIXXXXXXKNID 156 Query: 164 ------VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 FYQKYKIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 202 >gi|222103436|gb|ACM44247.1| small ribosomal protein subunit 4 [Polytrichum juniperinum] Length = 180 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 78 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTFNSLEKKGLVNQI---LDRESINLKINELLVVEYYSR 178 >gi|157689420|gb|ABV65266.1| ribosomal protein S4 [Begonia cucullata] Length = 197 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q SK S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 25 GSDLKNQSHSSKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 83 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+ VNG V+I SYRCK D+I K QKS+ L Sbjct: 84 EMRLDNIIFRLGIASTIPQARQLVNHRHIFVNGGIVDIPSYRCKPRDIITAKDEQKSRAL 143 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S +E +VP++++++ +I S K V + LVVE+YSR Sbjct: 144 IQNYLNSSPSE-EVPKHLTLHPFQYKGLVNQIIDS-KSVGLKI--NELLVVEYYSR 195 >gi|157887720|emb|CAM33382.1| ribosomal protein S4 [Leptodontium gemmascens] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDCITINDRKKSQSIITKNIDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPHHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|33411998|emb|CAD86773.1| ribosomal protein small subunit 4 [Bryobartramia novae-valesiae] Length = 178 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFISIKNRQKSQAIIIKNIDFSQKY 137 Query: 163 DVPEYIS 169 VP ++S Sbjct: 138 KVPNHLS 144 >gi|307828415|gb|ADN95005.1| small ribosomal protein 4 [Fossombronia cultriformis] Length = 188 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 27 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQTLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + + + + + L ++ Sbjct: 86 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQESQSIIAKNMSLFQK- 144 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 145 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 186 >gi|293634069|gb|ADE60414.1| ribosomal protein subunit 4 [Polytrichadelphus longisetus] Length = 184 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 82 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 182 >gi|289599856|gb|ADD12879.1| ribosomal protein S4 [Curatella americana] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 9/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G +L G TRS L Q R K S + ++L KQK++ +YG ++E++ Sbjct: 1 RRLG-SLPGLTSKRPKTRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLK 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I S Sbjct: 56 YVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D+I VK + K A + ++P++++++ +I S K V Sbjct: 116 YRCKPRDIITVKDEHKSRALIQNYLDSFPHEELPKHLTLHPFQYKGLVNQIIDS-KWV-- 172 Query: 192 PVIMQPNLVVEFYSR 206 V + LVVE+YSR Sbjct: 173 GVKINELLVVEYYSR 187 >gi|170516221|gb|ACB15112.1| small ribosomal protein 4 [Tetraclinis articulata] Length = 200 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 35 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + ++ ++D Sbjct: 94 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPHDLISIKEKEGLRNIIKKNIEIFQKD 153 Query: 164 ---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + V+ K + + LVVE+YSR Sbjct: 154 KMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 198 >gi|63191837|gb|AAY34878.1| small ribosomal protein subunit 4 [Leptodontium luteum] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDCITINDRQKSQSIITKNIDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPHHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|548869|sp|P36461|RR4_IRIPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|439946|emb|CAA82453.1| ribosomal protein S4 [Iris pallida] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S + ++ Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRSGSDPKN-------QLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHE-ELPNHLTID 167 >gi|170516229|gb|ACB15116.1| small ribosomal protein 4 [Bowenia spectabilis] Length = 194 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 12 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLQYVRIAGRAKG 70 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R TI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 71 STGQVLLQLLEMRSDNTIFRLGMASTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 130 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 V+ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 131 VRDQQRSRAMIEKNLDLSQKDQMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVV 187 Query: 202 EFYSR 206 E+YSR Sbjct: 188 EYYSR 192 >gi|42718108|gb|AAS38476.1| rps4 [Meesia muelleri] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KNSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|3914870|sp|O36057|RR4_TIGSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293099|emb|CAA92548.1| ribosomal protein S4 [Tigridia sp. 'Lejeune 1997'] gi|17154477|emb|CAC83915.1| ribosomal protein S4 [Calydorea pallens] gi|17154607|emb|CAC83913.1| ribosomal protein S4 [Eleutherine latifolia] Length = 182 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 11/152 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S ++ L Q R K S + ++L KQK++ +YG ++E++ A +++ Sbjct: 18 RPRSGID-------LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVKQK--SKQLASVLEASQLAERDVPEYISVN 171 K K SK L AS E ++P +++++ Sbjct: 130 TTKDKERSKVLIQNYIASSPHE-ELPNHLTID 160 >gi|121720615|ref|YP_001001536.1| ribosomal protein S4 [Nuphar advena] gi|69216106|gb|AAZ03891.1| ribosomal protein S4 [Nuphar advena] gi|84682206|gb|ABC60460.1| ribosomal protein S4 [Nuphar advena] Length = 201 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A ++ G T L+ LE R Sbjct: 32 LRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKANGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNH H+LVNGR V+I SYRCK D+I K K + A + Sbjct: 91 LDNILFRLGMASTIPGARQLVNHGHILVNGRLVDIPSYRCKPRDIITTKDKQRSRALIQN 150 Query: 154 -LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++S AE +P++++++ +I S K V + L+VE+YSR Sbjct: 151 HMDSSSNAE--LPKHLTLHSLQYKGVVNQIIDS-KWVGLKI--NELLIVEYYSR 199 >gi|33413177|emb|CAD86724.1| ribosomal protein small subunit 4 [Tridontium tasmanicum] Length = 192 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRHVLVN R V+I SYRCK D I + + K + + +++ Sbjct: 90 GMAPTIPGARQLVNHRHVLVNNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNVDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 190 >gi|12642232|gb|AAK00198.1| rps4 [Physcomitrium lorentzii] Length = 188 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 22 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 81 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNID 140 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 141 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|63191839|gb|AAY34879.1| small ribosomal protein subunit 4 [Streptotrichum ramicola] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQSIITNNIEFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPHHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|293634063|gb|ADE60411.1| ribosomal protein subunit 4 [Polytrichadelphus ciliatus] Length = 190 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|42794720|gb|AAS45755.1| Rps4 [Thibaudia litensis] Length = 211 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK + +YG + E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKWRFHYG-LPERQLLKSVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP +++ N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTXNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|28194765|gb|AAO33644.1|AF480999_1 ribosomal protein S4 [Tortula subulata var. subinermis] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAKKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|63191716|gb|AAY34818.1| small ribosomal protein subunit 4 [Trachycystis microphylla] Length = 182 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 180 >gi|297179943|gb|ADI23951.1| small ribosomal protein 4 [Sphagnum palenae] Length = 186 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 3 PGLTNKTPQSKSGYINQSISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 62 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPRDFI 121 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + ++ P +++++ +I + + + LV Sbjct: 122 TIKDRPKSQAIITRSMDYSQSHKTPNHLNLDSSQKKGLVNQI---IDRESIGLKINELLV 178 Query: 201 VEFYSR 206 VE+YSR Sbjct: 179 VEYYSR 184 >gi|225024812|ref|ZP_03714004.1| hypothetical protein EIKCOROL_01699 [Eikenella corrodens ATCC 23834] gi|224942415|gb|EEG23624.1| hypothetical protein EIKCOROL_01699 [Eikenella corrodens ATCC 23834] Length = 140 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++FR F EA R +G T L+ LESRLD +VYR F T ARQ V+H+ +LVNG Sbjct: 3 ERQFRRYFAEASRRKGATGELLLQLLESRLDNVVYRMGFGSTRAEARQLVSHKAILVNGE 62 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI S++ K GD + V++K+K+ + E+ QLA + +P ++SV+ D F +P Sbjct: 63 VVNIPSFQVKAGDTVSVREKAKKQVRIQESLQLATQIGLPSWVSVDVDKQEGVFRNMPDR 122 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 V + LVVEFYS+ Sbjct: 123 ---VDLYSDINEQLVVEFYSK 140 >gi|12330554|gb|AAG52814.1| ribosomal protein 4 [Catoscopium nigritum] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKDQQKSQAIIXKNIDFSQKA 146 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N + +V + R LK + LVVE+YSR Sbjct: 147 KVPNHLTFNFLQKNGLVNQILDRDSIGLK-------INELLVVEYYSR 187 >gi|22854701|gb|AAN09770.1| small ribosomal protein 4 [Dicranoloma menziesii] Length = 185 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A +++ +++ Sbjct: 83 GMXPTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDFITIKDRRKSEAIIIKNIDFSQKH 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 143 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 183 >gi|218157225|gb|ACK58429.1| ribosomal protein subunit 4 [Polytrichadelphus peruvianus] Length = 186 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 184 >gi|146261549|gb|ABQ15084.1| ribosomal protein S4 [Aphanopetalum resinosum] Length = 184 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L K K++ +YG ++E++ A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKRSQYRIRLEEKXKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A Sbjct: 71 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITAKDQQKSRAX 130 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + L++S ++P++++++ P K + +I + LVV Sbjct: 131 IQNYLDSS--PHEELPKHLTLH-----------PFQYKGLVNQIIDNKWVGLKINELLVV 177 Query: 202 EFYSR 206 E+YSR Sbjct: 178 EYYSR 182 >gi|118627506|emb|CAL39387.1| small ribosomal protein 4 [Isopaches bicrenatus] Length = 202 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 138 TIKNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---INQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|12330472|gb|AAG52773.1| ribosomal protein 4 [Muscoflorschuetzia pilmaiquen] Length = 187 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRC+ D I +K + K +++ +++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCQPQDFITIKDRQKSQGIIVKNMDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFDSLEKKGVVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|125662678|gb|ABN50289.1| small ribosomal protein 4 [Platycladus orientalis] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 31 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++D Sbjct: 90 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKEGSKNRIKKNIDIFQKD 149 Query: 164 ---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + V+ K + + LVVE+YSR Sbjct: 150 KMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 194 >gi|63145908|gb|AAY33892.1| small ribosomal protein 4 [Jensenia spinosa] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 18/208 (8%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 E + KI RR+G L G + +RS Y L + K S + ++L KQK++ +YG Sbjct: 2 EGPRAKIIRRLGA-LPGLSHKMLGSRSGYTNQLTANK---KISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+ Sbjct: 58 -LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 N VNI SY CK DVI +K + + + + + + L E+ +P +++ + + +I Sbjct: 117 NDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGSVNQI 176 Query: 183 PS----SLKDVPYPVIMQPNLVVEFYSR 206 SLK + LVVE+YSR Sbjct: 177 IDREWISLK-------INELLVVEYYSR 197 >gi|33413229|emb|CAD86750.1| ribosomal protein small subunit 4 [Dialytrichia mucronata] Length = 190 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 188 >gi|67035730|gb|AAY62796.1| small ribosomal protein subunit 4 [Physcomitrella patens] Length = 186 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 20 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 79 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNID 138 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 139 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|62288923|sp|P69629|RR4_AGABR RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288953|sp|P69679|RR4_YUCFI RecName: Full=30S ribosomal protein S4, chloroplastic gi|2808626|emb|CAA58916.1| ribosomal protein S4 [Agave bracteosa] gi|2808632|emb|CAA58955.1| ribosomal protein S4 [Yucca filamentosa] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 16/177 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPRS-------GSDLKNPLRSVKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I KQ+SK L AS E ++P +++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHE-ELPNHLTID 167 >gi|307602391|gb|ADN68077.1| ribosomal protein S4 [Platycladus orientalis] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKEGSKNRIKKNIDIFQKD 142 Query: 164 ---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + V+ K + + LVVE+YSR Sbjct: 143 KMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|157689544|gb|ABV65328.1| ribosomal protein S4 [Qualea parviflora] Length = 194 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + K A Sbjct: 81 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITARDDQKSRAM 140 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V L++S +VP++++++ +I S K + + LVVE+YSR Sbjct: 141 VQNYLDSS--PHEEVPKHLTIHPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 192 >gi|42556452|gb|AAS19821.1| small ribosomal protein 4 [Lophozia ventricosa] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIKNKQKSQSIITKNLNLFQKMKIPSHLTFDSTKLQGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|14090506|gb|AAK53538.1| small ribosomal protein 4 [Exodictyon incrassatum] Length = 183 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-LTERQLLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRF 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R+VNI SY+CK D+I +K + K Q V + + Sbjct: 81 GLAPTIPGARQLVNHRHILVNNRTVNIPSYQCKPQDLITIKDQQKYQTMIVKNTNFFPKS 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLIFNSAEKKGLVNQI---LDKESIGLKINELLVVEYYSR 181 >gi|20531092|gb|AAM27367.1| ribosomal protein 4 [Muscoflorschuetzia pilmaiquen] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRC+ D I +K + K +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCQPQDFITIKDRQKSQGIIVKNMDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFDSLEKKGVVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|67035698|gb|AAY62780.1| small ribosomal protein subunit 4 [Dryptodon patens] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + +++ ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 197 >gi|67035712|gb|AAY62787.1| small ribosomal protein subunit 4 [Exodictyon dentatum] Length = 198 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P +S ++ K S + ++L KQK++ +YG ++E++ Sbjct: 6 KILRRLGTLSGLSNKTP---QSKASSINQSISNKKISQYRIRLEEKQKLRFHYG-LTERQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VN Sbjct: 62 LLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRFGLAPTIPGARQLVNHRHILVNNRIVN 121 Query: 130 IGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 I SY+CK D+I +K + K Q V + + +P ++ N +I L Sbjct: 122 IPSYQCKPQDLITIKDQQKYQTMIVKNTNFFPKSKIPNHLIFNSAEKKGLVNQI---LDK 178 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + L+VE+YSR Sbjct: 179 ESIGLKINELLIVEYYSR 196 >gi|293634071|gb|ADE60415.1| ribosomal protein subunit 4 [Polytrichadelphus purpureus] Length = 188 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|20531109|gb|AAM27375.1| ribosomal protein 4 [Bryum caespiticium] Length = 193 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDQQKSQTMISKNIDFYQKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N I L + + LVVE+YSR Sbjct: 151 KIPNHLTYNSLNKKGLVNXI---LDRESIDLKINELLVVEYYSR 191 >gi|3098170|gb|AAC15533.1| small ribosomal protein 4 [Brachymenium pulchrum] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|156598018|gb|ABU85275.1| ribosomal protein S4 [Cycas micronesica] Length = 201 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTNKRPKSRNDPTNQSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 78 STGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++ + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 138 IRDQRRSRAMIGKNLDLSQKDQMPNHLTLHSSQYKGLVNQIIDS-KWIGLKI--NELLVV 194 Query: 202 EFYSR 206 E+YSR Sbjct: 195 EYYSR 199 >gi|28194723|gb|AAO33623.1|AF480978_1 ribosomal protein S4 [Pseudocrossidium porphyreoneurum] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKTKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N I + L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGL---INNILNQESIGLKINELLVVEYYSR 194 >gi|26421773|gb|AAN78145.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSKVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|14276324|gb|AAK58200.1| small ribosomal protein 4 [Helicophyllum torquatum] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRVVDIPSYRCKPQDFITIKNRQKSQVVISKNIDFYQKF 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLENKGLVNQI---LNRESIGLKINELLVVEYYSR 197 >gi|89112965|gb|ABD61101.1| ribosomal protein subunit 4 [Crossidium davidai] Length = 172 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 11 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 70 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 129 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 130 KIPNHLTFNSLEKKGLINQI---LDQESIGLNINELLVVEYYSR 170 >gi|146261547|gb|ABQ15083.1| ribosomal protein S4 [Altingia excelsa] Length = 177 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 103/179 (57%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L K K++ +YG ++E++ + A +++G T L+ L Sbjct: 5 GSDLRHQSRSGKRSQYRIRLEEKXKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 63 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 64 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRAL 123 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 V L++S ++P +++++ + + + + + D + V ++ N LVVE+YSR Sbjct: 124 VQNYLDSS--PREELPNHLTLH----LFQYKGLVNQIIDSKW-VSLKINELLVVEYYSR 175 >gi|18028070|gb|AAL55959.1| ribosomal protein S4 [Jamesonia imbricata] gi|18028072|gb|AAL55960.1| ribosomal protein S4 [Jamesonia imbricata] gi|18028078|gb|AAL55963.1| ribosomal protein S4 [Jamesonia imbricata] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 123 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 179 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 180 ELLVVEFYSR 189 >gi|24473816|gb|AAL82751.1| small ribosomal subunit protein 4 [Bryum pungens] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITTKDRQKSQAIISKNLNLYQK- 155 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 156 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|3098172|gb|AAC15534.1| small ribosomal protein 4 [Rhodobryum giganteum] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A + + L ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSIIIKDRQESQAIISKNLNLYQK- 145 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 146 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 187 >gi|156598667|gb|ABU85589.1| ribosomal protein S4 [Scaevola aemula] Length = 232 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 3/109 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + +L+ KQK++ +YG ++E++ + A +++G+T L+ LE RLD I++R Sbjct: 39 KKSLYCTRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGETGQVLLQLLEMRLDNILFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 PT+ ARQ VNH+H+LVNGR VNI SYRCK D IE + QKS+ L Sbjct: 98 GMAPTLPGARQLVNHKHILVNGRIVNIPSYRCKPRDTIEARDDQKSRAL 146 >gi|12642234|gb|AAK00199.1| rps4 [Aphanorrhegma serratum] Length = 190 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 24 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 83 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNID 142 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 143 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|12642230|gb|AAK00197.1| rps4 [Physcomitrium pyriforme] Length = 191 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 25 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 84 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNID 143 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 144 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|63191807|gb|AAY34863.1| small ribosomal protein subunit 4 [Dialytrichia mucronata] Length = 194 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|289449916|ref|YP_003475187.1| 30S ribosomal protein S4 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184463|gb|ADC90888.1| ribosomal protein S4 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 203 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 13/180 (7%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR G N++G P N GP G++++S+ + QL KQK+K YYG +SE Sbjct: 11 RFKQSRRFGVNIFGNP----NELKRGPKKDGRKKESE---YAKQLNEKQKLKLYYG-VSE 62 Query: 68 KKFRSIF----KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 K+ ++ K+A RS L++ LE RLD + YR F ++ ARQ V H H+ V Sbjct: 63 KQMQNCMRKAKKQAQRSDMILGDILVTTLERRLDNLTYRLGFARSLRQARQMVVHGHIAV 122 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIP 183 NG+ V+I S+ C GD I V+ K+K+ +++A+ A V Y+ +N +N+ P Sbjct: 123 NGKKVDIPSFVCSVGDEISVRSKAKEF-ELIKANMEATSFVVPYLQLNKENLQGFLTTYP 181 >gi|37960591|gb|AAP70665.1| small ribosomal protein 4 [Sphagnum lapazense] Length = 195 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTNKTPQSKSGYINQSISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPRDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + ++ P +++++ +I + + + LV Sbjct: 131 TIKDRPKSQAIITRSMDYSQSHKTPNHLNLDSSQKKGLVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|12330540|gb|AAG52807.1| ribosomal protein 4 [Meesia uliginosa] gi|42718106|gb|AAS38475.1| rps4 [Meesia triquetra] Length = 188 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLKKQGLVNQI---LNRESIDLKINELLVVEYYSR 186 >gi|18028032|gb|AAL55940.1| ribosomal protein S4 [Jamesonia canescens] gi|18028056|gb|AAL55952.1| ribosomal protein S4 [Jamesonia scammanae] Length = 190 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 3 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 61 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 62 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 121 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 122 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 178 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 179 ELLVVEFYSR 188 >gi|307828392|gb|ADN94994.1| small ribosomal protein 4 [Fossombronia altilamellosa] Length = 186 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 84 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRHKSQSIIARSMGLFQK- 142 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 143 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 184 >gi|190361257|gb|ACE76933.1| ribosomal protein small subunit 4 [Crepidomanes minutum] Length = 167 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 30/172 (17%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+ Sbjct: 15 KVSQFRVRLEAKQRLRFNYGS-TERQLLRYVRIAKKAKGSTGQVLLQLLEMRLDNIVFNL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 + PTI AARQ VNHRH+LVN R V+I SYRCK D+I +K + +R Sbjct: 74 RMAPTIRAARQLVNHRHILVNNRFVDIPSYRCKPKDLITLKNQG-----------FLDRK 122 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++++ N +A I S+ ++ LVVE+YSR Sbjct: 123 VPDHLTLSFSESKIPKGLVNGIANRESINLSINEL---------LVVEYYSR 165 >gi|3914854|sp|O20235|RR4_IRILU RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292911|emb|CAA92540.1| ribosomal protein S4 [Iris lutescens] Length = 182 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD Sbjct: 28 QLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEA 156 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L A Sbjct: 87 ILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIA 146 Query: 157 SQLAERDVPEYISVN 171 S E ++P +++++ Sbjct: 147 SSPHE-ELPNHLTID 160 >gi|74273241|gb|ABA01320.1| ribosomal protein S4 [Paropsia braunii] Length = 163 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 2/137 (1%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E+ A +++G T L+ LE R Sbjct: 17 LQTQLRSGKRSQYRIRLEEKQKLRFHYG-LTERLLLKYVHIAGKAKGSTGQVLLQLLEMR 75 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK DVI K K + A + Sbjct: 76 LDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDVITTKDKERSKALIQN 135 Query: 156 A-SQLAERDVPEYISVN 171 + R +P +++++ Sbjct: 136 SLVSFPPRGLPNHLTID 152 >gi|293633997|gb|ADE60378.1| ribosomal protein subunit 4 [Notoligotrichum australe] Length = 187 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 85 GMTPTIPGARQLVTHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 185 >gi|289599933|gb|ADD12917.1| ribosomal protein S4 [Hibbertia saligna] Length = 167 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 3 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 61 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 62 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 121 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P+Y++++ +I S K V + LVVE+YSR Sbjct: 122 --SHEELPKYLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 165 >gi|262192906|gb|ACY30470.1| small ribosomal subunit protein 4 [Pohlia annotina] Length = 188 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K V + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMVSKNIDFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N N +I L + + LVVE+YSR Sbjct: 146 KIPNNLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 186 >gi|39546761|gb|AAR28107.1| small ribosomal protein 4 [Polytrichadelphus purpureus] Length = 195 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|85001767|gb|ABC68421.1| small ribosomal protein 4 [Pyramidula tetragona] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +V+R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNVVFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRHVLVN V+I SYRCK D I +K + K A + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPQDSITIKNRQKSQAIITKNIDFSQKY 153 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ SV +V + R LK + LVVE+YSR Sbjct: 154 KVPNHLTFDSVQKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|74027103|gb|AAZ94653.1| ribosomal protein S4 [Cucumis sativus] gi|115432806|gb|ABI97419.1| ribosomal protein S4 [Cucumis sativus] gi|115498306|gb|ABI98748.1| ribosomal protein S4 [Cucumis sativus] Length = 201 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPKT-------GNDLKNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNG V+I SYRCK D+I K + K + + L++S +++P+++++ Sbjct: 112 NHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSS--PPQELPKHLTLQPL 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVSLKI--NELLVVEYYSR 199 >gi|63191877|gb|AAY34898.1| small ribosomal protein subunit 4 [Eucladium verticillatum] Length = 194 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVSIPSYRCKPQDFIXIKDRQKSXIMITKNVDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSIEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|32892082|gb|AAP88980.1| ribosomal protein S4 [Passiflora haematostigma] gi|74273095|gb|ABA01247.1| ribosomal protein S4 [Passiflora rhamnifolia] Length = 183 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK GD+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPGDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P+++++ + +I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFRQEQLPKHLTLYRSQYKGSVNKIIDS-KWVGLEI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|7109203|gb|AAF36677.1| ribosomal protein 4 [Stegonia latifolia] Length = 190 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNILFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 188 >gi|3098144|gb|AAC15520.1| small ribosomal protein 4 [Timmia sibirica] Length = 184 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFIXIKNRQKSQAIIMKNIDFSQKY 146 Query: 163 DVPEYISVN 171 VP +++ N Sbjct: 147 KVPNHLTFN 155 >gi|16565357|gb|AAL26197.1|AF313590_1 small ribosomal protein 4 [Equisetum x ferrissii] Length = 196 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 6/193 (3%) Query: 17 ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 +NL G V ++ Q + K S +G++L AKQ+++ YG ++E++ + + Sbjct: 5 QNLPGLTNKLVESKKNKVSGSDQSIQKKVSQYGIRLEAKQRLRFNYG-LTERQLLNYVRI 63 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH+LVN R V++ S+ CK Sbjct: 64 ARCAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRHILVNNRIVDVPSFHCK 123 Query: 137 EGDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPV 193 D+I + K+ Q A+ VPE+ +S++ FV + + + + Sbjct: 124 PKDIITIGSPKTYQSILTKRIESFAKDQVPEHLTLSLSEPKKPKGFVNYLINRESIGLKI 183 Query: 194 IMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 184 --NELLVVEYYSR 194 >gi|24473824|gb|AAL82755.1| small ribosomal subunit protein 4 [Brachymenium angolense] Length = 198 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 96 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 154 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 155 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 196 >gi|46810990|gb|AAT01813.1| small ribosomal protein 4 [Austrofossombronia australis] Length = 181 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 20 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 79 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSIILFQK- 137 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 138 -PK--APNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 179 >gi|32401793|gb|AAP80885.1| small ribosomal protein 4 [Amborella trichopoda] Length = 178 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 1/116 (0%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 9 LRNQSRSGIRSLYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMR 67 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK GD + ++K K A Sbjct: 68 LDNILFRLGMASTIPGARQLVNHRHILVNGRLVDIPSYRCKPGDFVTTREKRKNTA 123 >gi|14090452|gb|AAK53511.1| small ribosomal protein 4 [Arthrocormus schimperi] gi|14090454|gb|AAK53512.1| small ribosomal protein 4 [Arthrocormus schimperi] Length = 182 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQKMIIKNTSF---- 135 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 136 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 180 >gi|17025824|gb|AAL32079.1| ribosomal protein 4 [Leucophanes seychellarum] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K +++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNRIVNIPSYHCKPQDFITIKDQQKYQTMIVKNTSF---- 152 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 153 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|59803320|gb|AAX07768.1| Rps4 [Symphyogyna undulata] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD IV+R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AER 162 PTI ARQ VNHRH++VN +VNI SY CK DVI +K + + + + + L ER Sbjct: 87 GMAPTIPGARQLVNHRHIIVNDNAVNIPSYNCKPQDVITIKDRRESQSIITKNINLFRER 146 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + +I SLK + LVVE+YSR Sbjct: 147 KIPNHLTFDSTRFCGSVNQIIDREWISLK-------INELLVVEYYSR 187 >gi|78369633|gb|ABB43046.1| ribosomal protein 4 [Calymperes motleyi] Length = 199 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K +++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNRIVNIPSYHCKPQDFITIKDQQKYQTMIVKNTSF---- 152 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 153 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|307828403|gb|ADN94999.1| small ribosomal protein 4 [Fossombronia densa] Length = 185 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 24 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 83 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRHKSQSIIAKNMSLFQK- 141 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 142 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 183 >gi|42794718|gb|AAS45754.1| Rps4 [Thibaudia inflata] Length = 211 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK + +YG + E+ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKWRFHYG-LPERXLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP +++ N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTXNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|12330542|gb|AAG52808.1| ribosomal protein 4 [Meesia triquetra] gi|42718104|gb|AAS38474.1| rps4 [Meesia uliginosa] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|28194685|gb|AAO33604.1|AF480959_1 ribosomal protein S4 [Pterygoneurum lamellatum] gi|28194763|gb|AAO33643.1|AF480998_1 ribosomal protein S4 [Tortula subulata var. subinermis] gi|28194779|gb|AAO33651.1|AF481006_1 ribosomal protein S4 [Crossidium aberrans] gi|28194857|gb|AAO33690.1|AF481045_1 ribosomal protein S4 [Bryoerythrophyllum recurvirostrum] gi|28194859|gb|AAO33691.1|AF481046_1 ribosomal protein S4 [Crossidium laevipilum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|3098200|gb|AAC15548.1| small ribosomal protein 4 [Meesia uliginosa] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLKKQGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|63191821|gb|AAY34870.1| small ribosomal protein subunit 4 [Crossidium crassinerve] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|63191843|gb|AAY34881.1| small ribosomal protein subunit 4 [Tridontium tasmanicum] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRHVLVN R V+I SYRCK D I + + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHVLVNNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 197 >gi|190361247|gb|ACE76928.1| ribosomal protein small subunit 4 [Polyphlebium endlicherianum] Length = 165 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L+AKQK++ YG +E++ + A R++G T L+ LE RLDTIVY+ Sbjct: 12 KISQFCVRLQAKQKLRFNYGS-TERQLLKYVRIARRAKGSTGQILLQLLEMRLDTIVYQL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHRH+LVN V+I SYRCK D+I ++ + Sbjct: 71 GMAPTIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITLRSR 113 >gi|28194827|gb|AAO33675.1|AF481030_1 ribosomal protein S4 [Tortula revolvens] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPSHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|3098214|gb|AAC15555.1| small ribosomal protein 4 [Paludella squarrosa] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLKKQGLINQI---LDRESIGLKINELLVVEYYSR 193 >gi|63191823|gb|AAY34871.1| small ribosomal protein subunit 4 [Pterygoneurum ovatum] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|322719469|gb|ADX07671.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719471|gb|ADX07672.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719473|gb|ADX07673.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719475|gb|ADX07674.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719477|gb|ADX07675.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719479|gb|ADX07676.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] Length = 198 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNLIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|28194673|gb|AAO33598.1|AF480953_1 ribosomal protein S4 [Dialytrichia mucronata] Length = 192 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 190 >gi|293634035|gb|ADE60397.1| ribosomal protein subunit 4 [Pogonatum convolutum] Length = 192 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNQQKSQAIIAKNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLKKKGLVNQI---LNRESIGLKINELLVVEYYSR 190 >gi|12642260|gb|AAK00212.1| rps4 [Tayloria scabriseta] Length = 193 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRVKSQAIINKNIEFXQKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 191 >gi|12330482|gb|AAG52778.1| ribosomal protein 4 [Tayloria splachnoides] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNRLKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|28194747|gb|AAO33635.1|AF480990_1 ribosomal protein S4 [Tortula atrovirens] gi|28194777|gb|AAO33650.1|AF481005_1 ribosomal protein S4 [Crossidium davidai] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLNINELLVVEYYSR 194 >gi|197131492|gb|ACH47264.1| ribosomal protein S4 [Pelargonium cotyledonis] Length = 229 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 81/132 (61%), Gaps = 4/132 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 58 KKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNTLFRL 116 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 TI ARQ VNHRH+LVN R V+I SYRCK D+I ++K K A + L++S Sbjct: 117 GMASTIPQARQLVNHRHILVNNRIVDIPSYRCKPRDIISAREKEKSRALIQNYLDSSAKN 176 Query: 161 ERDVPEYISVNH 172 ++ +P ++ +NH Sbjct: 177 QKALPHHLILNH 188 >gi|170784775|ref|YP_001718691.1| ribosomal protein S4 [Trachelium caeruleum] gi|156598820|gb|ABU85663.1| ribosomal protein S4 [Trachelium caeruleum] gi|157267523|gb|ABV26516.1| ribosomal protein S4 [Trachelium caeruleum] Length = 202 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 7/162 (4%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R P Sbjct: 43 YRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMAP 101 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDV 164 TI ARQ VNHRH+LVNGR V+I SYRCK D I K K K A + L++ + V Sbjct: 102 TIPGARQLVNHRHILVNGRLVDIPSYRCKPRDTITAKDKQKSKALIKNSLDSLPQKKLKV 161 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++++ +I S + + + + VVE+YSR Sbjct: 162 PPHLTLKRRQYKGLVNKIIDSQR---FGLEINELRVVEYYSR 200 >gi|33413231|emb|CAD86751.1| ribosomal protein small subunit 4 [Didymodon asperifolius] Length = 190 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIIITKNVDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLINQI---LDQKSIGLKINELLVVEYYSR 188 >gi|21914186|gb|AAM81315.1| ribosomal protein subunit 4 [Rhodobryum umbraculum] Length = 198 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 16/205 (7%) Query: 7 SKHKIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 ++ KI RR+G K+P + T S + + K S + ++L KQK++ +YG I Sbjct: 3 TRVKIIRRLGALPGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-I 57 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD ++++ PTI ARQ VNHRH+LVN Sbjct: 58 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFQLGMAPTIPGARQLVNHRHILVND 117 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR---- 181 R VNI SYRCK D I +K + K A + + L ++ Y + NH + F++ Sbjct: 118 RIVNIPSYRCKPEDSITIKDRPKSQAIISKNLNLYQK----YKTPNH--LTYNFLKKKGL 171 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 + L + + LVVE+YSR Sbjct: 172 VNQILDRESIGLKINELLVVEYYSR 196 >gi|12642228|gb|AAK00196.1| rps4 [Physcomitrella patens] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 28 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SYRCK D I VK + K A + + Sbjct: 87 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNID 146 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 147 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|293633995|gb|ADE60377.1| ribosomal protein subunit 4 [Notoligotrichum australe] Length = 187 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 85 GMTPTIPGARQLVTHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|63145904|gb|AAY33890.1| small ribosomal protein 4 [Jensenia spinosa] Length = 202 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G L G + +RS Y L + K S + ++L KQK++ Sbjct: 1 MSRYRGPRAKIIRRLG-TLPGLSHKMLGSRSGYTNQLTANK---KISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVAT 178 H+L+N VNI SY CK DVI +K + + + + + + L E+ +P +++ + + Sbjct: 116 HILINDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGS 175 Query: 179 FVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + D + + + LVVE+YSR Sbjct: 176 V----NQIIDREWIRLKINELLVVEYYSR 200 >gi|37548857|gb|AAO32697.1| ribosomal protein 4 [Pogonatum dentatum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 10/199 (5%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G P T PG Q +K S + ++L KQK++ +YG I+E+ Sbjct: 4 KIIRRLG----ALPGLTNKTPQLKPGYMNQTVSNKKISQYRIRLEEKQKLRFHYG-ITER 58 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN V Sbjct: 59 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIV 118 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + + + +++ +P +++ N +I L Sbjct: 119 NIPSYRCKPQDFITIKDRQESQVIIDKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 RESIGLKINELLVVEYYSR 194 >gi|307602389|gb|ADN68076.1| ribosomal protein S4 [Microbiota decussata] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKE 126 >gi|18028058|gb|AAL55953.1| ribosomal protein S4 [Jamesonia scammanae] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 1 PGLTGRDKTSNSLDFRVAFDXSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 59 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 60 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 119 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 120 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 176 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 177 ELLVVEFYSR 186 >gi|28194699|gb|AAO33611.1|AF480966_1 ribosomal protein S4 [Oxystegus sinuosus] gi|28194751|gb|AAO33637.1|AF480992_1 ribosomal protein S4 [Bryoerythrophyllum recurvirostrum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|162415134|gb|ABX89141.1| ribosomal protein S4 [Didymodon rigidulus var. ditrichoides] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIIITKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQKSIGLKINELLVVEYYSR 187 >gi|162415108|gb|ABX89128.1| ribosomal protein S4 [Didymodon hedysariformis] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIIITKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQKSIGLKINELLVVEYYSR 187 >gi|118577550|gb|ABL07141.1| small ribosomal protein 4 [Peperomia quadrifolia] Length = 183 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 19/189 (10%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 K PV+ S L Q R K S + ++L KQK++ +YG + E++ + A +++G Sbjct: 6 KRPVSESS----LRSQPRSGKRSQYRIRLEEKQKLRFHYG-LGERQLLRYVRIAGKAKGS 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I Sbjct: 61 TGQVLLQILEMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITT 120 Query: 144 K--QKSKQLA--SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN- 198 + QKSK L S+ AS+ ++P++++++ + + I + + D + V ++ N Sbjct: 121 RNAQKSKVLVQNSIDSASR---EELPKHLTLDS----SQYKGIVNQIIDGKW-VGLKINE 172 Query: 199 -LVVEFYSR 206 LVVE+YSR Sbjct: 173 LLVVEYYSR 181 >gi|6002043|emb|CAA58931.1| ribosomal protein S4 [Dioscorea balcanica] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 18/178 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDFKNQSRFGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTEQQLLRYVHIAGKAKGSTDQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K K + A + +E+S ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSIESS--PHEELPKHLTID 167 >gi|83940937|gb|ABC48865.1| rps4 [Pterostyrax psilophyllus] Length = 193 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 23/202 (11%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K P++ G L Q R K S + ++L KQK++ +YG ++E++ Sbjct: 5 RRLGALPGLTNKRPID----GTDLRNQSRFGKKSQYRIRLEEKQKLRFHYG-LTERQLLK 59 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I S Sbjct: 60 YVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPS 119 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 YRCK D+I + + K + VL L S +H+ + P K + Sbjct: 120 YRCKPRDIITSRDEQK--SRVLIQHSLD--------SSHHEELPKHLTLYPFQYKGLVNQ 169 Query: 193 VI--------MQPNLVVEFYSR 206 +I + LVVE+YSR Sbjct: 170 IIDSKWVGLKINELLVVEYYSR 191 >gi|307602225|gb|ADN67994.1| ribosomal protein S4 [Chamaecyparis lawsoniana] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 21/174 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + + ++D Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIINKNIDIFQKD 142 Query: 164 ---VPEYIS-----VNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +V + RI + ++ LVVE+YSR Sbjct: 143 KMRVPPHLNRIKQKAQYSGLVKKIIDNKRIGLKINEL---------LVVEYYSR 187 >gi|78369617|gb|ABB43038.1| ribosomal protein 4 [Leucophanes octoblepharioides] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 97 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKSQDFITIKDQQKYQTMIVKNRSFSPKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|67035676|gb|AAY62769.1| small ribosomal protein subunit 4 [Campylopodiella stenocarpa] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K V + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLEKKGLVNQI---LNKESIGLKINELLVVEYYSR 192 >gi|92417439|gb|ABE76815.1| ribosomal protein subunit 4 [Lycopodium clavatum] Length = 175 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 14 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ + + +++++ Sbjct: 73 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRSESRTIIAKNNKISQTY 132 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + S + + LVVE+YSR Sbjct: 133 KIPNHLTLHSLQNKGLVNKIIDRES------IDLNINELLVVEYYSR 173 >gi|12330506|gb|AAG52790.1| ribosomal protein 4 [Drummondia prorepens] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRSDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 147 KVPNHLTFNSLQKKGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|293634065|gb|ADE60412.1| ribosomal protein subunit 4 [Polytrichadelphus giganteus] Length = 178 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 17 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A ++ +++ Sbjct: 76 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKY 135 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 136 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 176 >gi|157689446|gb|ABV65279.1| ribosomal protein S4 [Clidemia dentata] Length = 175 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 3 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 61 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + K A Sbjct: 62 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDDQKSRAV 121 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 122 IQNYLDSS--PREELPKHLTLH 141 >gi|18028046|gb|AAL55947.1| ribosomal protein S4 [Jamesonia alstonii] gi|18028068|gb|AAL55958.1| ribosomal protein S4 [Jamesonia imbricata] Length = 190 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 3 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 61 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 62 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 121 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 122 DIITIRNQPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 178 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 179 ELLVVEFYSR 188 >gi|14090466|gb|AAK53518.1| small ribosomal protein 4 [Pseudosymblepharis schimperiana] Length = 182 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 180 >gi|118626027|emb|CAL41741.1| small ribosomal protein 4 [Anastrophyllum minutum var. weberi] Length = 191 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|77862539|gb|ABB04542.1| small ribosomal protein 4 [Marchantia paleacea] Length = 201 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 97/164 (59%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 40 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N +V+I SY CK DVI +K +SK + +++ + ++ Sbjct: 99 GMAPTIPGARQLVNHRHILINNNTVDIPSYNCKPKDVITIKDRSKSQSIIIKNLNSFQKQ 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + +I ++ Y I + LVVE+YSR Sbjct: 159 KIPNHLTFDLMQIKGLVNQIID--REWIYLKINEL-LVVEYYSR 199 >gi|32879547|emb|CAE11884.1| ribosomal protein S4 [Onira unguiculata] Length = 180 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 11/152 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S ++ L Q R K S + ++L KQK++ +YG ++E++ A +++ Sbjct: 16 RPRSGID-------LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 68 GSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 127 Query: 142 EVKQK--SKQLASVLEASQLAERDVPEYISVN 171 K K SK L AS E ++P +++++ Sbjct: 128 TTKDKERSKVLIQNYIASSPHE-ELPNHLTID 158 >gi|47606926|gb|AAT36383.1| ribosomal protein subunit 4 [Pyrrhobryum dozyanum] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFYYG-ITEQQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|63191825|gb|AAY34872.1| small ribosomal protein subunit 4 [Stegonia latifolia] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNILFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|307828411|gb|ADN95003.1| small ribosomal protein 4 [Austrofossombronia australis] Length = 186 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 84 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSIILFQK- 142 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 143 -PK--APNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 184 >gi|307602227|gb|ADN67995.1| ribosomal protein S4 [Chamaecyparis obtusa] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|305672307|gb|ADM63577.1| ribosomal protein S4 [Triosteum perfoliatum] Length = 167 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 20 QSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + L+ Sbjct: 79 ILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITARDEQNSRALIQNSLD 138 Query: 156 ASQLAERDVPEYISVN 171 +S + +P+++++ Sbjct: 139 SS--PHKKLPKHLTLQ 152 >gi|33413259|emb|CAD86764.1| ribosomal protein small subunit 4 [Helicophyllum torquatum] Length = 181 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 20 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 79 GMAPTIPGARQLVNHRHILVNNRVVDIPSYRCKPQDFITIKNRQKSQVVISKNIDFYQKF 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 139 KIPNHLTYNSLENKGLVNQI---LNRESIGLKINELLVVEYYSR 179 >gi|28194679|gb|AAO33601.1|AF480956_1 ribosomal protein S4 [Aloina ambigua] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|3098146|gb|AAC15521.1| small ribosomal protein 4 [Funaria hygrometrica] Length = 190 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 9/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G L G +S P Q K S + ++L KQK++ +YG I+E++ + Sbjct: 2 RRLGV-LPGLTNKTPQLKSSSPN---QSAAKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 117 YRCKPEDSITVKNRQKSQAIITKNIDFSQKAKVPNHLTFDSTQKKGLVNQI---LDRESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|305672371|gb|ADM63609.1| ribosomal protein S4 [Forstera bidwillii] Length = 173 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 6/139 (4%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 23 LRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 81 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-AS 152 LD I++R PTI ARQ VNHRH+LVNG V+I SYRCK D I + QKSK L + Sbjct: 82 LDNILFRLGMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPRDTIAARDEQKSKALIQN 141 Query: 153 VLEASQLAERDVPEYISVN 171 L++S ++P +++++ Sbjct: 142 FLDSS--PHEELPNHLTLH 158 >gi|68164805|ref|YP_247601.1| ribosomal protein S4 [Cucumis sativus] gi|75317263|sp|Q4VZH3|RR4_CUCSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|67511400|emb|CAJ00760.1| ribosomal protein S4 [Cucumis sativus] Length = 201 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G L Q R K S + ++L KQ Sbjct: 1 MSRYRRPRFKKIRRLGA-LPGLTSKRPKT-------GNDLKNQSRSGKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNG V+I SYRCK D+I K + K + + L++S +++P+++++ Sbjct: 112 NHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSS--PPQELPKHLTLQPL 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 170 QYKGLVNQIIDS-KWVSLKI--NELLVVEYYSR 199 >gi|32401904|gb|AAP80940.1| small ribosomal protein 4 [Chamaecyparis obtusa] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 29 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 88 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 131 >gi|29422413|gb|AAO84602.1| small ribosomal protein 4 [Catoscopium nigritum] Length = 171 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKDQQKSQAIIXKNIDFSQKA 155 Query: 163 DVPEYISVN 171 VP +++ N Sbjct: 156 KVPNHLTFN 164 >gi|63191805|gb|AAY34862.1| small ribosomal protein subunit 4 [Cinclidotus aquaticus] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|24473820|gb|AAL82753.1| small ribosomal subunit protein 4 [Brachymenium globosum] gi|63191695|gb|AAY34809.1| small ribosomal protein subunit 4 [Osculatia columbica] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 7 RIIRRLGALPGLTSKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 61 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A + +G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 62 QLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 121 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K A + + L ++ Y + NH + F++ + Sbjct: 122 NIPSYRCKPEDSITIKDRQKSQAIISKNINLYQK----YKTPNH--LTYNFLKKKGLVNQ 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ILDRESIGLKINELLVVEYYSR 197 >gi|42718096|gb|AAS38470.1| rps4 [Tetraplodon itatiaiae] gi|42718102|gb|AAS38473.1| rps4 [Tetraplodon fuegianus] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHIIVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|3914845|sp|O20208|RR4_DIEGR RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292835|emb|CAA92536.1| ribosomal protein S4 [Dietes grandiflora] Length = 182 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 4/135 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD Sbjct: 28 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGLVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEA 156 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L A Sbjct: 87 ILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDIITTKDKQRSKALIQNYIA 146 Query: 157 SQLAERDVPEYISVN 171 S E ++P +++++ Sbjct: 147 SSPHE-ELPNHLTID 160 >gi|11467476|ref|NP_043622.1| ribosomal protein S4 [Odontella sinensis] gi|1350894|sp|P49492|RR4_ODOSI RecName: Full=30S ribosomal protein S4, chloroplastic gi|1185171|emb|CAA91654.1| 30S ribosomal protein S4 [Odontella sinensis] Length = 206 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 10/186 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKS----KPSYFGLQLRAKQ 56 MS+ K +I RR+G L G + + PG HG+ ++ K + +G++L KQ Sbjct: 1 MSRYRGPKLRITRRLGA-LPGLTQKQSKKKGR-PGQHGKSNEADNSKKTTEYGIRLEEKQ 58 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG ++E + KEA R +G T L+ LE RLDTI + F PTI +ARQ V Sbjct: 59 KLKFNYG-LTESQLYRYIKEARRRKGVTGLILLQLLEMRLDTICFTLGFAPTIASARQLV 117 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS--QLAERDVPEYISVNHDN 174 NH H+ VN V+I S++C+ DVI +K K+ +++E + + + D+P ++ + Sbjct: 118 NHGHITVNDNVVSIPSFQCQINDVIGIKPKATS-KNLVEGNLQTIKQVDLPTHLKFDKSK 176 Query: 175 MVATFV 180 AT + Sbjct: 177 QEATVI 182 >gi|305672369|gb|ADM63608.1| ribosomal protein S4 [Stylidium graminifolium] Length = 173 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A + +G T L+ L Sbjct: 20 GNDLRNQSRWGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKVKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PT+ ARQ VNHRH+LVNGR V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMAPTVPGARQLVNHRHILVNGRIVDIPSYRCKPRDTISARDEQKSRAL 138 Query: 153 V 153 + Sbjct: 139 I 139 >gi|118626009|emb|CAL39322.1| small ribosomal protein 4 [Mylia taylorii] Length = 203 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 18/187 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD++ Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIL 137 Query: 142 EVKQKSKQLASVLEASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 ++ K K + + + L ++ +P ++S + N+ + I ++ + + L Sbjct: 138 TIRNKQKSQSIITKNINLLNQNLKIPSHLSFDSTNLRGS---INQTINREWVNLKINELL 194 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 195 VVEYYSR 201 >gi|42794643|gb|AAS45719.1| Rps4 [Ceratostema silvicola] Length = 211 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++ + QK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRXQXXQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSHKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|63191817|gb|AAY34868.1| small ribosomal protein subunit 4 [Rhexophyllum subnigrum] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNFLEKKGLINQI---LDQESIGLKINELLVVEYYSR 197 >gi|290487072|gb|ADD29920.1| ribosomal protein S4 [Meliosma aff. cuneifolia Moore 333] Length = 201 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGKVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMSSTIPGARQLVNHRHILVNGRIVDIPSYRCNPRDLITAKDEQKSRAL 147 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 148 IQNYLDSS--PHEELPKHLTLHSFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|229825290|ref|ZP_04451359.1| hypothetical protein GCWU000182_00644 [Abiotrophia defectiva ATCC 49176] gi|229790662|gb|EEP26776.1| hypothetical protein GCWU000182_00644 [Abiotrophia defectiva ATCC 49176] Length = 198 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 12/170 (7%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIV 100 + K S +G QLR KQK K YG + EK FR+ F A + + G T NL+ LE RLD ++ Sbjct: 36 RRKISEYGAQLREKQKAKFIYG-VLEKPFRNNFARAQKLKYGTTGENLMILLELRLDNVI 94 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEAS 157 +R T ARQ V H+ VLVNG+ VNI SY GD IE+K+K +++ VLEA+ Sbjct: 95 FRLGLARTRKEARQMVGHKMVLVNGKQVNIPSYTVAVGDKIEIKEKKKSIQRIKDVLEAT 154 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 R VP ++ ++ +N+ AT IP+ + DVP + +VE YS+ Sbjct: 155 N--GRLVPAWLEMDRENLTATVKEIPTRDQIDVPVDEV----FIVELYSK 198 >gi|118626047|emb|CAL41748.1| small ribosomal protein 4 [Scapania obcordata] Length = 202 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+LVN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIKNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGS---VNQTVNREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63191841|gb|AAY34880.1| small ribosomal protein subunit 4 [Didymodon rigidulus] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 197 >gi|118626163|emb|CAL39379.1| small ribosomal protein 4 [Tritomaria scitula] Length = 202 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNNTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGS---VNQTVNREWVDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|3098202|gb|AAC15549.1| small ribosomal protein 4 [Tetraplodon mnioides] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHIIVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|307602219|gb|ADN67991.1| ribosomal protein S4 [Calocedrus decurrens] gi|307602221|gb|ADN67992.1| ribosomal protein S4 [Calocedrus macrolepis] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|18028048|gb|AAL55948.1| ribosomal protein S4 [Jamesonia alstonii] gi|18028076|gb|AAL55962.1| ribosomal protein S4 [Jamesonia laxa] Length = 191 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 123 DIITIRNQPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 179 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 180 ELLVVEFYSR 189 >gi|18028040|gb|AAL55944.1| ribosomal protein S4 [Jamesonia pulchra] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 1 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 59 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 60 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 119 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 120 DIITIRNQPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 176 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 177 ELLVVEFYSR 186 >gi|28194787|gb|AAO33655.1|AF481010_1 ribosomal protein S4 [Crossidium seriatum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMISKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|24473848|gb|AAL82768.1| small ribosomal subunit protein 4 [Imbribryum muehlenbeckii] Length = 199 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V+HRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVSHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|170516217|gb|ACB15110.1| small ribosomal protein 4 [Libocedrus sp. QBW-2007] Length = 200 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 35 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 94 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 137 >gi|124021094|gb|ABM88820.1| small ribosomal protein subunit 4 [Aneura pinguis] Length = 192 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 31 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQFLLQLLEMRLDNTIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GD+I + + K +L + + + L + Sbjct: 90 GMVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDIITINNREKCRLVNWRDMNSLQKP 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 150 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 190 >gi|42718094|gb|AAS38469.1| rps4 [Tetraplodon lamii] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITTKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|162415102|gb|ABX89125.1| ribosomal protein S4 [Didymodon constrictus var. flexicuspis] gi|162415124|gb|ABX89136.1| ribosomal protein S4 [Didymodon rigidulus var. icmadophilus] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|18028034|gb|AAL55941.1| ribosomal protein S4 [Jamesonia canescens] gi|18028036|gb|AAL55942.1| ribosomal protein S4 [Jamesonia canescens] gi|18028038|gb|AAL55943.1| ribosomal protein S4 [Jamesonia canescens] gi|18028044|gb|AAL55946.1| ribosomal protein S4 [Jamesonia alstonii] gi|18028050|gb|AAL55949.1| ribosomal protein S4 [Jamesonia rotundifolia] gi|18028052|gb|AAL55950.1| ribosomal protein S4 [Jamesonia rotundifolia] gi|18028054|gb|AAL55951.1| ribosomal protein S4 [Jamesonia rotundifolia] gi|18028060|gb|AAL55954.1| ribosomal protein S4 [Jamesonia imbricata] gi|18028062|gb|AAL55955.1| ribosomal protein S4 [Jamesonia imbricata] gi|18028066|gb|AAL55957.1| ribosomal protein S4 [Jamesonia imbricata] gi|18028074|gb|AAL55961.1| ribosomal protein S4 [Jamesonia imbricata] gi|18028080|gb|AAL55964.1| ribosomal protein S4 [Jamesonia imbricata] Length = 191 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 123 DIITIRNQPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 179 Query: 197 PNLVVEFYSR 206 LVVEFYSR Sbjct: 180 ELLVVEFYSR 189 >gi|28194711|gb|AAO33617.1|AF480972_1 ribosomal protein S4 [Phascum cuspidatum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINNRKKSQVIITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPTHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|28194785|gb|AAO33654.1|AF481009_1 ribosomal protein S4 [Tortula brevissima] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMISKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|3098160|gb|AAC15528.1| small ribosomal protein 4 [Imbribryum alpinum] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRSARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ V+HRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 86 GMAPTIPGARQLVSHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 144 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 145 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 186 >gi|162415088|gb|ABX89118.1| ribosomal protein S4 [Tortula mucronifolia] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|63078573|gb|AAY29373.1| ribosomal protein S4 [Eucladium verticillatum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVSIPSYRCKPQDFISIKDRQKSQIMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSIEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|37960615|gb|AAP70677.1| small ribosomal protein 4 [Sphagnum tenerum] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 34 KVSQYRIXLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-R 162 PTI ARQ VNHRH+LVN +VNI SYRCK D I +K + K A + + + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + +I + + + LVVE+YSR Sbjct: 153 KTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLVVEYYSR 193 >gi|12642216|gb|AAK00190.1| rps4 [Drummondia obtusifolia] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRSDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 147 KVPNHLTFNSLQKKGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|322719515|gb|ADX07694.1| small ribosomal protein subunit 4 [Racomitrium himalayanum] gi|322719517|gb|ADX07695.1| small ribosomal protein subunit 4 [Racomitrium himalayanum] gi|322719519|gb|ADX07696.1| small ribosomal protein subunit 4 [Racomitrium himalayanum] Length = 198 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 96 GMASTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKDRQKSQAMIMKNIYFSQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLENKGLINQI---LDHESIGLKINELLVVEYYSR 196 >gi|32401862|gb|AAP80919.1| small ribosomal protein 4 [Sciadopitys verticillata] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 97/168 (57%), Gaps = 7/168 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQ+ + +YG ++E++ + A RS+G T L+ LE RLD I++R Sbjct: 21 KKSQYRVRLKEKQRARFHYG-LTERQLLQYVRIAKRSKGSTGEILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D+I ++ + + + + +RD Sbjct: 80 GMALTIPEARQLVNHRHILVNNRMVDIPSYRCKPQDMISIRDQQRSKNRIQKNIDFYQRD 139 Query: 164 VPEYISVNHDNMV---ATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +NH N+ + ++ + + + D+ + ++ N LVVE+YSR Sbjct: 140 KMSGKVLNHLNLSIQKSQYIGLVNQIIDIK-QIGLKINELLVVEYYSR 186 >gi|63191813|gb|AAY34866.1| small ribosomal protein subunit 4 [Microbryum davallianum] Length = 191 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI YRCK D I + + K + + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPXYRCKPQDFITINDRKKSQVMITKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|77862531|gb|ABB04538.1| small ribosomal protein 4 [Lunularia cruciata] Length = 180 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 19 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N +V+I SY CK DVI +K + K + + + + ++ Sbjct: 78 GMAPTIPGARQLVNHRHILINDNTVDIPSYNCKPKDVITIKNRQKSQSIITKNLTSFQKQ 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P ++S + + F + + + D + + + LVVE+YSR Sbjct: 138 KIPNHLSFD----LIQFQGLINQIIDREWIYLKINELLVVEYYSR 178 >gi|32892122|gb|AAP89000.1| ribosomal protein S4 [Passiflora lancetillensis] Length = 183 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 11/127 (8%) Query: 34 PGLHGQR--------RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTS 85 PGL +R R K S + ++L+ KQK++ +YG ++E++ + A +++G T Sbjct: 4 PGLTSKRPIVGSAFSRSGKKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTG 62 Query: 86 HNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK- 144 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK Sbjct: 63 QVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITVKD 122 Query: 145 -QKSKQL 150 QKSK + Sbjct: 123 EQKSKDM 129 >gi|28194713|gb|AAO33618.1|AF480973_1 ribosomal protein S4 [Leptodontium flexifolium] Length = 190 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDCITINDRKKSQIMITKNIDFSQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPHHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 188 >gi|26399087|sp|O78678|RR4_OROMI RecName: Full=Plastid 30S ribosomal protein S4 gi|3421346|emb|CAA07624.1| ribosomal protein S4 [Orobanche minor] Length = 203 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ + L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPKAEKD-------LINQSRFVKKSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ V Sbjct: 53 KLRFHYG-LTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHD 173 NHRHVLVNGR V+I SYRCK D+I K K + + + L +S A+ +P +++++ Sbjct: 112 NHRHVLVNGRIVDIPSYRCKPLDIITAKDKQQSRTLIQNSLNSSPHAK--IPNHLTLDLF 169 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I +S K V + L+VE+YSR Sbjct: 170 QYKGIVNQIINS-KWVGLKI--NEFLIVEYYSR 199 >gi|305672199|gb|ADM63523.1| ribosomal protein S4 [Dipsacus laciniatus] gi|305672269|gb|ADM63558.1| ribosomal protein S4 [Pterocephalodes hookeri] Length = 173 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 6/135 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 26 QSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + L+ Sbjct: 85 ILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQKSLD 144 Query: 156 ASQLAERDVPEYISV 170 +S ++P+++++ Sbjct: 145 SS--THEELPKHLTL 157 >gi|293633993|gb|ADE60376.1| ribosomal protein subunit 4 [Notoligotrichum australe] Length = 181 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 79 GMTPTIPGARQLVTHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 139 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 179 >gi|162415132|gb|ABX89140.1| ribosomal protein S4 [Didymodon rufidulus] Length = 188 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIIITKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQKSIGLKINELLVVEYYSR 186 >gi|32401804|gb|AAP80890.1| small ribosomal protein 4 [Magnolia stellata] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 17 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 75 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q+S+ L Sbjct: 76 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQRSRAL 135 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + YI S H+ + S K + +I + LVV Sbjct: 136 -------------IQNYIDSSPHEELAKHLTFHSSQYKGLVNQIIDSKWIGLKINELLVV 182 Query: 202 EFYSR 206 E+YSR Sbjct: 183 EYYSR 187 >gi|26399106|sp|P59143|RR4_HYPDI RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504363|emb|CAC81025.1| small ribosomal protein 4 [Hypopterygium didictyon] Length = 202 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSASNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K A + + + ++ +P +++ N Sbjct: 117 ILVNGYIVDIPSYRCKPQDFINIKNQRKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LNRESIGLKINELLVVEYYSR 200 >gi|307828390|gb|ADN94993.1| small ribosomal protein 4 [Fossombronia alata] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 28 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRHKSQSIIAKNMSLFQK- 145 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P + NH + +T +R I ++ + + LVVE+YSR Sbjct: 146 -PR--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 187 >gi|293612010|gb|ADE48449.1| ribosomal protein 4 [Macrozamia lucida] Length = 183 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 18/186 (9%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 1 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I YRCK DVI Sbjct: 60 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPGYRCKPRDVIT 119 Query: 143 VKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-FVRIPSSLKDVPYPVI-MQPNLV 200 V+ + K A + + L+++D NH + ++ + + + + D + + + LV Sbjct: 120 VRDQQKSRAMIEKNIDLSQKDQMS----NHLTLHSSRYKGLVNQIIDSKWISLKINELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|290467467|gb|ADD25851.1| small ribosomal protein 4 [Hymenophyllum dicranotrichum] Length = 187 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GMSPTIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 141 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 142 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 185 >gi|219973352|gb|ACL68562.1| ribosomal protein small subunit 4 [Marsilea mexicana] Length = 187 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 1 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 55 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVNGR V++ SYRC+ Sbjct: 56 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNGRIVDVPSYRCEPQ 115 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 116 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 150 >gi|118626037|emb|CAL39331.1| small ribosomal protein 4 [Anastrophyllum minutum] Length = 191 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTNKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|49182795|gb|AAT57859.1| small ribosomal protein [Scapania nemorea] Length = 195 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+LVN +V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILVNNDTVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGS---VNQTVNRECINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|63191781|gb|AAY34850.1| small ribosomal protein subunit 4 [Notoligotrichum australe] Length = 194 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 92 GMTPTIPGARQLVTHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|118626153|emb|CAL39374.1| small ribosomal protein 4 [Saccobasis polita] gi|118627548|emb|CAL39407.1| small ribosomal protein 4 [Saccobasis polita] Length = 202 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIKNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|28194775|gb|AAO33649.1|AF481004_1 ribosomal protein S4 [Crossidium squamiferum] Length = 196 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVIITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|42718078|gb|AAS38461.1| rps4 [Tayloria scabriseta] Length = 189 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRVKSQAIINKNIEFNQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|18028082|gb|AAL55965.1| ribosomal protein S4 [Jamesonia brasiliensis] Length = 187 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L KQ+++ YG ++E++ + A ++RG T L+ LE RLD I++R Sbjct: 25 KISQFCVRLETKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNILFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRC D+I ++ + ++ + + Sbjct: 84 GMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPKDIITIRNQPIS-HNMTKGESIGRDG 142 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ D A V +S + V + LVVEFYSR Sbjct: 143 IPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--NELLVVEFYSR 185 >gi|14090492|gb|AAK53531.1| small ribosomal protein 4 [Leucobryum sanctum] Length = 186 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + V + + +++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 141 KVPNHLTFDSLEKKGLVNQI---LNHESIGLKINELLVVEYYSR 181 >gi|22854717|gb|AAN09778.1| small ribosomal protein 4 [Didymodon paramicola] Length = 191 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V I SYRCK D I + + K V + +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVGIPSYRCKPQDFITINNRKKSQVMVAKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|170516223|gb|ACB15113.1| small ribosomal protein 4 [Microbiota decussata] Length = 200 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 35 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 94 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKE 137 >gi|153805598|ref|YP_001382179.1| ribosomal protein S4 [Leptosira terrestris] gi|171704565|sp|A6YGA2|RR4_LEPTE RecName: Full=30S ribosomal protein S4, chloroplastic gi|134270129|gb|ABO69318.1| ribosomal protein S4 [Leptosira terrestris] Length = 221 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 25/225 (11%) Query: 1 MSKRESSKHKIDRR--IGENLWGRPKSPVNTRSYGPGLHGQRRKSKP---------SYFG 49 MS+ ++ +I R+ + + L G + + R PG H ++R + + Sbjct: 1 MSRYRGARLRIVRQFDLKQTLRGLTRKRTDNRCM-PGQHRKKRNDSTKKTKNSKKVAQYQ 59 Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L+ KQK++ YG I+E + + ++A +++G T L+ LE RLD IV+R PTI Sbjct: 60 IRLQEKQKLRFNYG-ITESQLINYVRQARKTKGSTGETLLQLLEMRLDNIVFRLGMAPTI 118 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE--------ASQLAE 161 AARQ VNH H++VN + V+I SY+C+ DVI V K+K + +++ + L Sbjct: 119 PAARQLVNHGHIVVNNKKVDISSYQCQSQDVISVT-KNKTIRTLISNFINSKTPKNLLRN 177 Query: 162 RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N ++ T I S + + ++ L+VEFYSR Sbjct: 178 PQIPSHLIFNKSTLLGT---IKSVVPRRWIGLKIKELLIVEFYSR 219 >gi|63191827|gb|AAY34873.1| small ribosomal protein subunit 4 [Tortula subulata] Length = 194 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVIITKNVDFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 192 >gi|321309627|ref|YP_004191956.1| 30S ribosomal protein S4 [Mycoplasma haemofelis str. Langford 1] gi|319801471|emb|CBY92117.1| ribosomal protein S4 [Mycoplasma haemofelis str. Langford 1] Length = 204 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 99/186 (53%), Gaps = 7/186 (3%) Query: 1 MSKRESSKHKIDRRIGENLW--GRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 MS+ S K R++G +L R + R+ PG HG + K S +G QLR KQK Sbjct: 1 MSRFTGSIFKKSRKLGISLLENNREFTKWKKRTTPPGQHGNSGVRRKVSLYGEQLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + YG + + + R FK A + G S+NL+ LE RLD +VYR F PT AARQ V+ Sbjct: 61 LALMYG-LHDAQLRRFFKAARKIEGSLSYNLLLLLERRLDNVVYRMNFAPTRRAARQLVS 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H HVLVNG+ V+I S D I + K L V + L E D P+Y+ V+ +N Sbjct: 120 HGHVLVNGKQVDIPSLWVNINDEIAIVPKYHHLPLV---NMLKEYDTPDYVDVDPENKRG 176 Query: 178 TFVRIP 183 ++R P Sbjct: 177 IYLRYP 182 >gi|74273201|gb|ABA01300.1| ribosomal protein S4 [Passiflora cirrhiflora] Length = 183 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|254995573|emb|CAO82745.1| ribosomal protein S4 [Lycopodium clavatum] Length = 172 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 97/167 (58%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + +S+ + + +++++ Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRSESRTIIAKNNKISQTY 129 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + S + + LVVE+YSR Sbjct: 130 KIPNHLTLHSLQNKGLVNKIIDRES------IDLNINELLVVEYYSR 170 >gi|29422369|gb|AAO84580.1| small ribosomal protein 4 [Anacolia menziesii] Length = 180 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRXHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 78 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 178 >gi|37548849|gb|AAO32693.1| ribosomal protein 4 [Oligotrichum hercynicum] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK + I +K + + A + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQEFITIKDRQESQAIIARNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|14090456|gb|AAK53513.1| small ribosomal protein 4 [Leucophanes albescens] Length = 182 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K +++ + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYHCKPQDFITIKDQQKYQTMIVKNTSF---- 135 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 136 FPKYKTPNHLIFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 180 >gi|12330536|gb|AAG52805.1| ribosomal protein 4 [Leptobryum wilsonii] gi|42718116|gb|AAS38480.1| rps4 [Leptobryum wilsonii] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFIIIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|293633969|gb|ADE60364.1| ribosomal protein subunit 4 [Atrichum androgynum] Length = 190 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + ++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAIITRNIDFSQTY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 188 >gi|170516249|gb|ACB15126.1| small ribosomal protein 4 [Macrozamia moorei] Length = 186 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 18/186 (9%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 4 PGLTNKRPKSRNDPTNQSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 62 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D ++R PTI ARQ VNHRH+LVN R V+I YRCK DVI Sbjct: 63 STGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHRHILVNDRVVDIPGYRCKPRDVIT 122 Query: 143 VKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-FVRIPSSLKDVPYPVI-MQPNLV 200 V+ + K A + + L+++D NH + ++ + + + + D + + + LV Sbjct: 123 VRDQQKSRAMIEKNIDLSQKDQMS----NHLTLHSSRYKGLVNQIIDSKWISLKINELLV 178 Query: 201 VEFYSR 206 VE+YSR Sbjct: 179 VEYYSR 184 >gi|190361229|gb|ACE76919.1| ribosomal protein small subunit 4 [Trichomanes ankersii] Length = 167 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 18/166 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+R Sbjct: 15 KVSQFGIRLEAKQRLRFNYGS-TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLA 160 PTI AARQ VNHRHVLVN V+I SYRCK D+I ++ + K++ L S L Sbjct: 74 GMAPTIPAARQLVNHRHVLVNNHIVDIPSYRCKHKDLITLRSQESFRKRIPDHLTFSSLE 133 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + I N +A I ++ ++ LVVE+YSR Sbjct: 134 GNSIKGLI-----NGIANRDSIDLNINEL---------LVVEYYSR 165 >gi|118724453|gb|ABL10800.1| ribosomal protein small subunit 4 [Cheilanthes acrostica] Length = 195 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ VNHRH+LVNG V+I SYRCK D+I ++ + + + Sbjct: 87 IIFQLGMASTIPAARQLVNHRHILVNGHIVDIPSYRCKSKDIITIRNRPTSYNAA-KGKS 145 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++++++ + + + + + LVVE++SR Sbjct: 146 LGRDEVPDHLTLSISKTSESTGLVNHTANRESVNLDINELLVVEYHSR 193 >gi|14090428|gb|AAK53499.1| small ribosomal protein 4 [Syrrhopodon gardneri] Length = 182 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTNFS--- 136 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 137 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 180 >gi|307828422|gb|ADN95008.1| small ribosomal protein 4 [Fossombronia alata] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRHKSQSIIAKNMSLFQK- 143 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P + NH + +T +R I ++ + + LVVE+YSR Sbjct: 144 -PR--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 185 >gi|293634027|gb|ADE60393.1| ribosomal protein subunit 4 [Pogonatum belangeri] gi|293634061|gb|ADE60410.1| ribosomal protein subunit 4 [Pogonatum usambaricum] Length = 192 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFIIIKNRQKSQAIIAKNIDFSQKY 149 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 190 >gi|293633991|gb|ADE60375.1| ribosomal protein subunit 4 [Notoligotrichum angulatum] Length = 188 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 86 GMTPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|114107048|ref|YP_740204.1| ribosomal protein S4 [Liriodendron tulipifera] gi|122221293|sp|Q0G9L7|RR4_LIRTU RecName: Full=30S ribosomal protein S4, chloroplastic gi|113200996|gb|ABI32511.1| ribosomal protein S4 [Liriodendron tulipifera] Length = 201 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + Q+S+ L Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRGEQRSRAL 147 Query: 151 ASVLEASQLAERDVPEYI-SVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + YI S H+ + S K + +I + LVV Sbjct: 148 -------------IQNYIDSSPHEELAKHLTFHSSQYKGLVNQIIDSKWIGLKINELLVV 194 Query: 202 EFYSR 206 E+YSR Sbjct: 195 EYYSR 199 >gi|12330468|gb|AAG52771.1| ribosomal protein 4 [Dendroligotrichum squamosum] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I + + + A + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIXDRQESQAIIARNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|3098244|gb|AAC15570.1| small ribosomal protein 4 [Hymenodontopsis vallis-gratiae] gi|47606940|gb|AAT36390.1| ribosomal protein subunit 4 [Hymenodontopsis vallis-gratiae] Length = 195 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ ++ FV K + + LVVE+YSR Sbjct: 153 KIPNHLTYSYLEK-KGFVNQILDRKSIGLKI--NELLVVEYYSR 193 >gi|3098180|gb|AAC15538.1| small ribosomal protein 4 [Mielichhoferia elongata] Length = 199 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQSLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|289599858|gb|ADD12880.1| ribosomal protein S4 [Davilla elliptica] Length = 165 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R VNI SYRCK D+I VK + K A + L++S Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 --PDEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 163 >gi|162415136|gb|ABX89142.1| ribosomal protein S4 [Didymodon rivicola] Length = 188 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIIITKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNFLEKKGLINQI---LDQKSIGLKINELLVVEYYSR 186 >gi|162415112|gb|ABX89130.1| ribosomal protein S4 [Aloina rigida] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|157785984|gb|ABV74166.1| small ribosomal protein 4 [Hypopterygium didictyon] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 94 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFINIKNQRKSEAIISKNIEFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTYNSLEKKGLVNQI---LNRESIGLKINELLVVEYYSR 194 >gi|6002081|emb|CAA58950.1| ribosomal protein S4 [Tradescantia pallida] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 9/180 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G +RS L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKKPRSRS---DLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNH+H Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHKH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYI---SVNHDNMV 176 +LVNGR V+I SYRCK D+I K K + A + + L+ ++P+++ S H +V Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSISLSPHEELPKHLTFDSFQHKGLV 175 >gi|67035724|gb|AAY62793.1| small ribosomal protein subunit 4 [Luisierella barbula] Length = 190 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K A + + ++ ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDRIVNIPSYCCKTQDFITIKNRQKSQAIINKNIEIYQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KLPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|307828409|gb|ADN95002.1| small ribosomal protein 4 [Fossombronia cultriformis] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQTLLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV +VNI SY CK GDVI V+ + + + + + L ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVGDDTVNIPSYSCKPGDVITVRNRQESQSIIAKNMSLFQK- 143 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T +R I ++ + + LVVE+YSR Sbjct: 144 -PK--TPNHLTLDSTRLRGSINQTIDRDWINLKINELLVVEYYSR 185 >gi|162415114|gb|ABX89131.1| ribosomal protein S4 [Aloina obliquifolia] Length = 188 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|42794666|gb|AAS45730.1| Rps4 [Polyclita turbinata] Length = 211 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 96/172 (55%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++LR Q ++ +YG ++E++ + A +++G L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLRENQXLRFHYG-LTERQLLKYVRIAGKAKGSXGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKHKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|42718080|gb|AAS38462.1| rps4 [Tayloria kilimandscharica] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRLKSQAIINKNIEFNQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|32401900|gb|AAP80938.1| small ribosomal protein 4 [Calocedrus decurrens] Length = 190 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 25 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 84 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 127 >gi|22854693|gb|AAN09766.1| small ribosomal protein 4 [Dicnemon semicryptum] Length = 191 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQESQAMIIKNLDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|118627528|emb|CAL39398.1| small ribosomal protein 4 [Schistochilopsis incisa] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 19 PGLTGKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMALTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSVITKNLNLFQKLKIPNHLTFDFTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|28194691|gb|AAO33607.1|AF480962_1 ribosomal protein S4 [Aschisma carniolicum] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYSCKPQDFITIKDRQKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|20531094|gb|AAM27368.1| ribosomal protein 4 [Barbula convoluta] Length = 193 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNNNIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKS 150 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 191 >gi|293633999|gb|ADE60379.1| ribosomal protein subunit 4 [Notoligotrichum bellii] Length = 185 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 83 GMTPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|289599945|gb|ADD12923.1| ribosomal protein S4 [Pinzona coriacea] Length = 181 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK TRS L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 5 RPK----TRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 56 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 57 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDII 116 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK + K A + ++P++++++ +I S K V + LV Sbjct: 117 TVKDEHKSRALIQNYLDSFPHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLV 173 Query: 201 VEFYSR 206 VE+YSR Sbjct: 174 VEYYSR 179 >gi|157689444|gb|ABV65278.1| ribosomal protein S4 [Cephalotus follicularis] Length = 185 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 13 GSAFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLFKYVRIAGKAKGSTGQVLLQLL 71 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I +QKS+ L Sbjct: 72 EMRLDNILFRLGMALTIPQARQLVNHRHILVNGHIVDIPSYRCKPRDIITATDEQKSRAL 131 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S A ++P+++++ +I S K V + LVVE+YSR Sbjct: 132 IQNYLDSS--AHEELPKHLTLQPLQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 183 >gi|11228656|gb|AAG33113.1| small ribosomal protein 4 [Leucoloma serrulatum] Length = 191 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + ++ + +++ Sbjct: 89 GIAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPKDFITIKNRQNFQNMTIKNTGFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I + + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---IDQESIGLKINELLVVEYYSR 189 >gi|116010531|emb|CAL38869.1| ribosomal protein S4 [Dipsacus fullonum] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 7/171 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 28 QSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLRLLEMRFHN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + L+ Sbjct: 87 ILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQKSLD 146 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S ++P+++++ +I S K V + + LVVE+YSR Sbjct: 147 SS--THEELPKHLTLQSFQYKGLVNQIIDS-KWVVLNLKINELLVVEYYSR 194 >gi|162415126|gb|ABX89137.1| ribosomal protein S4 [Didymodon nigrescens] Length = 188 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|157785982|gb|ABV74165.1| small ribosomal protein 4 [Hypopterygium didictyon] Length = 197 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFINIKNQRKSEAIISKNIEFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLEKKGLVNQI---LNRESIGLKINELLVVEYYSR 195 >gi|32401795|gb|AAP80886.1| small ribosomal protein 4 [Nymphaea tetragona] Length = 181 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A ++ G T L+ LE R Sbjct: 12 LRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKANGSTGQVLLQLLEMR 70 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNH H+LVNGR V+I SYRCK D+I K K A + Sbjct: 71 LDNILFRLGMASTIPGARQLVNHGHILVNGRLVDIPSYRCKPRDIITTKDKQGSRALIQN 130 Query: 154 -LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++S AE +P++++++ +I S K V V L+VE+YSR Sbjct: 131 HMDSSSNAE--LPKHLTLHSLQYKGVVNQIIDS-KWVGLKV--NELLIVEYYSR 179 >gi|15145836|gb|AAK83536.1| rps4 [Voitia nivalis] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R V I SYRCK D I +K + K A + + + +++ Sbjct: 87 GMAPTIPGARQLINHRHILVNDRIVXIPSYRCKPQDFITIKDRQKSQAIISKNIEFSQKY 146 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTYN 155 >gi|307828398|gb|ADN94997.1| small ribosomal protein 4 [Fossombronia truncata] gi|307828430|gb|ADN95012.1| small ribosomal protein 4 [Fossombronia truncata] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 143 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T R I ++ + + LVVE+YSR Sbjct: 144 -PK--TPNHLTLDSTRFRGSINQTIDRDWINLKINELLVVEYYSR 185 >gi|307602249|gb|ADN68006.1| ribosomal protein S4 [Fokienia hodginsii] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPRDLISIKEKQ 126 >gi|92417451|gb|ABE76821.1| ribosomal protein subunit 4 [Atrichum undulatum] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAITTRNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 187 >gi|110590038|gb|ABG77462.1| ribosomal protein small subunit 4 [Equisetum hyemale] gi|110590042|gb|ABG77464.1| ribosomal protein small subunit 4 [Equisetum hyemale subsp. affine] Length = 178 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 8/172 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S +G++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 9 QSIQKKISQYGIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 67 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE--A 156 I++R FVPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + + K S+L Sbjct: 68 ILFRLGFVPTIPSARQLINHRHILVNNRIVDVPSFHCKPKDIITI-EAPKTYQSILSKRL 126 Query: 157 SQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A+ +PE+ +S++ FV + + + + LVVE+YSR Sbjct: 127 ESFAKDQIPEHLTLSLSEPKKPKGFVNYLINRESIGLKI--NELLVVEYYSR 176 >gi|26421789|gb|AAN78153.1| ribosomal protein S4 [Tortula vahliana] Length = 195 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFLYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|28194753|gb|AAO33638.1|AF480993_1 ribosomal protein S4 [Tortula inermis] gi|28194757|gb|AAO33640.1|AF480995_1 ribosomal protein S4 [Tortula inermis] gi|28194759|gb|AAO33641.1|AF480996_1 ribosomal protein S4 [Tortula inermis] gi|28194761|gb|AAO33642.1|AF480997_1 ribosomal protein S4 [Tortula inermis] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRF 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|299830591|ref|YP_003735040.1| 30S ribosomal protein S4 [Durinskia baltica] gi|297384955|gb|ADI40254.1| 30S ribosomal protein S4 [Durinskia baltica] Length = 204 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 114/212 (53%), Gaps = 15/212 (7%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKS--KPSYFGLQLRAKQ 56 MS+ K KI RR+G L + +N PG G + K + +G++L KQ Sbjct: 1 MSRYRGPKLKISRRLGSLPGLTTKKSKKLNR----PGKDGNSPDTSKKLTEYGIRLEEKQ 56 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG + FR + KEA R +G T L+ LE RLDT+ + F ++ ARQ V Sbjct: 57 KLKFNYGLTESQLFRYV-KEARRRKGVTGLILLQLLEMRLDTLCFTLGFASSMAQARQLV 115 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS--QLAERDVPEYISVNHDN 174 NH H+ VN + +NI S++C+ D I VK+KS ++++A+ ++P + + ++ Sbjct: 116 NHGHITVNNKVINIPSFQCRLNDTISVKEKSSS-KNLIDANLKNNPRSEIPSNLKFDSNS 174 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + AT + + +D+ P+ + LV+E+YSR Sbjct: 175 LKATVLDY-CNREDI--PLQLDELLVIEYYSR 203 >gi|146261551|gb|ABQ15085.1| ribosomal protein S4 [Cercidiphyllum japonicum] Length = 174 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 2 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 60 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNH+H+LVNG VNI SYRCK D+I + QKS+ L Sbjct: 61 EMRLDNILFRLGMASTIPGARQLVNHKHILVNGGIVNIPSYRCKPRDIITARDEQKSRAL 120 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 121 IQNYLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 172 >gi|118625975|emb|CAL39309.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626005|emb|CAL39320.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626121|emb|CAL39360.1| small ribosomal protein 4 [Anastrophyllum minutum] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|46811042|gb|AAT01839.1| small ribosomal protein 4 [Podomitrium phyllanthus] Length = 194 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + SKPS+ + ++L KQK++ +YG ++E++ + A ++ Sbjct: 11 PGLSYKMLGSKPSHTNRLTTNRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD IV+R PTI AARQ VNHRH+++N +VNI SY CK DVI Sbjct: 70 GSTGQILLQLLEMRLDNIVFRLGMAPTIPAARQLVNHRHIVINDNTVNIPSYNCKPRDVI 129 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K + + + + + L E+ +P +++ + + +I SLK + Sbjct: 130 TIKNRRESQSIITKNINLFREQRIPNHLTFDSTRFYGSVNQIIDREWISLK-------IN 182 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 183 ELLVVEYYSR 192 >gi|3914852|sp|O20231|RR4_HEAMA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292888|emb|CAA92551.1| ribosomal protein S4 [Scadoxus puniceus] Length = 182 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNPLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIARKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNFIASAPRE-ELPNHLTID 160 >gi|289599889|gb|ADD12895.1| ribosomal protein S4 [Doliocarpus multiflorus] gi|289599891|gb|ADD12896.1| ribosomal protein S4 [Doliocarpus subandinus] Length = 182 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK TRS L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 RPK----TRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 57 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 58 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDII 117 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK + K A + ++P++++++ +I S K V + LV Sbjct: 118 TVKDEHKSRALIQNYLDSFPHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLV 174 Query: 201 VEFYSR 206 VE+YSR Sbjct: 175 VEYYSR 180 >gi|89147842|gb|ABD62769.1| ribosomal protein 4 [Takakia ceratophylla] Length = 168 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ ++G ++E++ + A R++G T + LE RLD +++R Sbjct: 7 KXSQYRIRLEEKQKLRFHHG-LTERQLFKYVRIARRAKGSTGQVPLQLLEMRLDNVIFRL 65 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R+VNI S+RCK D I +K + K A + + +++ Sbjct: 66 GMAPTIPGARQLVNHRHILVNDRTVNIPSFRCKPQDFITIKDRQKSQAIITKNMDCSQKS 125 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N +I + + + LVVE+YSR Sbjct: 126 KIPNHLTLNSSQKRGLVNQI---IDRESIGLKINELLVVEYYSR 166 >gi|3098198|gb|AAC15547.1| small ribosomal protein 4 [Leptobryum pyriforme] Length = 199 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFIIIKDRQKSQAIISKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|20531096|gb|AAM27369.1| ribosomal protein 4 [Dicnemon semicryptum] Length = 192 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 31 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKNRQESQAMIIKNIDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 150 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 190 >gi|157887718|emb|CAM33381.1| ribosomal protein S4 [Leptodontium wallisii] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQSIITKNIDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPHHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|305672185|gb|ADM63516.1| ribosomal protein S4 [Leycesteria formosa] Length = 167 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 20 QSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + L+ Sbjct: 79 ILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSLD 138 Query: 156 ASQLAERDVPEYISVN 171 +S + +P+++++ Sbjct: 139 SS--PHKKLPKHLTLQ 152 >gi|169805298|gb|ACA83748.1| ribosomal protein S4 [Conostomum pentastichum] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|46811050|gb|AAT01843.1| small ribosomal protein 4 [Scapania nemorea] Length = 197 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+LVN +V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILVNNDTVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 133 TIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGS---VNQTVNRECINLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|42718100|gb|AAS38472.1| rps4 [Tetraplodon mnioides] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIIKKNIEFYQKY 146 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTYN 155 >gi|307828396|gb|ADN94996.1| small ribosomal protein 4 [Fossombronia truncata] gi|307828419|gb|ADN95007.1| small ribosomal protein 4 [Fossombronia truncata] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 28 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 145 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T R I ++ + + LVVE+YSR Sbjct: 146 -PK--TPNHLTLDSTRFRGSINQTIDRDWINLKINELLVVEYYSR 187 >gi|222103552|gb|ACM44305.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 200 >gi|222103536|gb|ACM44297.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 200 >gi|20531081|gb|AAM27362.1| ribosomal protein 4 [Diphyscium fulvifolium] Length = 192 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K +++ +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQNIIVKNMDFSQK- 148 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + + + + L + + LVVE+YSR Sbjct: 149 ---YKTPNHLXLDSLXKKGLVNQILDRGSIGLKINELLVVEYYSR 190 >gi|307828424|gb|ADN95009.1| small ribosomal protein 4 [Fossombronia truncata] Length = 190 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 29 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 88 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 146 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T R I ++ + + LVVE+YSR Sbjct: 147 -PK--TPNHLTLDSTRFRGSINQTIDRDWINLKINELLVVEYYSR 188 >gi|305672345|gb|ADM63596.1| ribosomal protein S4 [Symphoricarpos sp. Donoghue & Winkworth 28] Length = 167 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 83/136 (61%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 20 QSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D+I + + A + L+ Sbjct: 79 ILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSLD 138 Query: 156 ASQLAERDVPEYISVN 171 +S + +P+++++ Sbjct: 139 SS--PHKKLPKHLTLQ 152 >gi|218157211|gb|ACK58422.1| ribosomal protein subunit 4 [Atrichopsis compressa] gi|218157219|gb|ACK58426.1| ribosomal protein subunit 4 [Notoligotrichum minimum] gi|293634001|gb|ADE60380.1| ribosomal protein subunit 4 [Notoligotrichum crispulum] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 85 GMTPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|149126893|gb|ABR20460.1| small ribosomal protein [Trichocoleopsis sacculata] Length = 191 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 8 PGLTGKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNETVNIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + L ++ +P +++ + + + ++ ++ Y I + LV Sbjct: 127 TIRNKEKSQSIITRNMNLFQKLKIPNHLTFDSTQLRGSVNQMIQ--REWIYLKINEL-LV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|18028042|gb|AAL55945.1| ribosomal protein S4 [Jamesonia pulchra] Length = 175 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L KQ+++ YG ++E++ + A ++RG T L+ LE RLD I++R Sbjct: 13 KISQFCVRLETKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNILFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRC D+I ++ + ++ + + Sbjct: 72 GMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPKDIITIRNQPIS-HNMTKGESIGRDG 130 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ D A V +S + V + LVVEFYSR Sbjct: 131 IPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--NELLVVEFYSR 173 >gi|3098176|gb|AAC15536.1| small ribosomal protein 4 [Cinclidium stygium] Length = 187 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + L ++ Sbjct: 80 GMASTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTIISKNIDLYQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 180 >gi|74273227|gb|ABA01313.1| ribosomal protein S4 [Adenia isaloensis] Length = 185 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 20/189 (10%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP N ++ + + K S + ++L+ KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPKNRSAFQ-----NQSRCKKSQYSIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 62 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD +++R TI ARQ VNHRH+LVNGR V+I +YRCK D+I V Sbjct: 63 TGQVLLQLLEMRLDNMLFRLGMASTIPQARQLVNHRHILVNGRIVDIPNYRCKPRDLITV 122 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQP 197 K QKSK L AS + +P++++++ + +V + R LK + Sbjct: 123 KDEQKSKDLIRNSLAS-FPQEKLPKHLTLDPLQYKGLVNQIIDRKWVGLK-------INE 174 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 175 LLVVEYYSR 183 >gi|239582581|dbj|BAH70342.1| ribosomal protein S4 [Cercidiphyllum japonicum] gi|239582602|dbj|BAH70347.1| ribosomal protein S4 [Cercidiphyllum japonicum] gi|239582623|dbj|BAH70352.1| ribosomal protein S4 [Cercidiphyllum japonicum] Length = 201 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 112/209 (53%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH+H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHKH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNG VNI SYRCK D+I + QKS+ L + L++S ++P++++++ Sbjct: 116 ILVNGGIVNIPSYRCKPRDIITARDEQKSRALIQNYLDSS--PHEELPKHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|118626097|emb|CAL39350.1| small ribosomal protein 4 [Jamesoniella colorata] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ YYG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFYYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNGIVDIPSYNCEPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIRNKQKSQSIITQNTNLFQKVKIPSHLTFDSTQLRG-FVNQTINREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63145915|gb|AAY33895.1| small ribosomal protein 4 [Pallavicinia rubristipa] Length = 199 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 10/204 (4%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 E + KI RR+G L G + +RS Y L + K S + ++L KQK++ +YG Sbjct: 2 EGPRAKIIRRLGA-LPGLSHKMLGSRSSYTNQLTANK---KISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+ Sbjct: 58 -LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRI 182 N +VNI SY CK DVI ++ + + + + + L E+ +P +++ + + +I Sbjct: 117 NKNTVNIPSYNCKPRDVITIRNRHESQSVITKNINLFQEQRIPNHLTFDSTRFCGSVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 ---IDREWIGLKINELLVVEYYSR 197 >gi|7576613|gb|AAF63919.1| ribosomal protein system 4 [Trichosteleum papillosum] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + E+ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNSMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYEKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLINKI---LDRESIGLKINELLVVEYYSR 188 >gi|74273191|gb|ABA01295.1| ribosomal protein S4 [Passiflora serratifolia] Length = 183 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 18/187 (9%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L+ KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLKEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P++++++ +I S + V +Q N L Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQIIDSKR-----VGLQINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|118626141|emb|CAL39368.1| small ribosomal protein 4 [Lophozia ventricosa var. silvicola] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKMKIPSHLTFDSTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|15145840|gb|AAK83538.1| rps4 [Brachymitrion moritzianum] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQAIINKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGFINQI---LDRESIGLKINELLVVEYYSR 187 >gi|3098228|gb|AAC15562.1| small ribosomal protein 4 [Fontinalis antipyretica] Length = 199 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEALISKNIELYKKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YIS+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYISLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|18027952|gb|AAL55900.1| ribosomal protein S4 [Syngramma quinata] Length = 191 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 4/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L KQK++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 24 QSASEKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R TI AARQ VNHRH+LVNG V+I SYRCK D+I ++++ ++ + ++ Sbjct: 83 ILFRLGMASTIPAARQLVNHRHILVNGCIVDIPSYRCKPKDIITIRKRP--ISHTVAKAE 140 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RD +P++++++ + + + LVVE+YSR Sbjct: 141 FIGRDGIPDHLTLSFSKAGEQVGLVNHMANRESVDLEINELLVVEYYSR 189 >gi|37548835|gb|AAO32686.1| ribosomal protein 4 [Atrichum undulatum] Length = 192 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAITTRNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 190 >gi|28194743|gb|AAO33633.1|AF480988_1 ribosomal protein S4 [Pottia lanceolata] Length = 194 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G + L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSSGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|118625985|emb|CAL39314.1| small ribosomal protein 4 [Symphyogyna podophylla] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G L G + +RS Y L + K S + ++L KQK++ Sbjct: 1 MSRYRGPRAKIIRRLGA-LPGLSHEMIGSRSGYINQLAANK---KISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARGAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVAT 178 H++VN +V+I SY CK DVI ++ + + + + + L ER +P +++ + + Sbjct: 116 HIIVNDDTVDIPSYNCKPQDVITIRDRRESQSVITKNINLFRERRIPNHLTFDSTRFCGS 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 VNQI---IDREWIGLKINELLVVEYYSR 200 >gi|125662682|gb|ABN50291.1| small ribosomal protein 4 [Fokienia hodginsii] Length = 197 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 32 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 91 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPRDLISIKEKQ 134 >gi|47606906|gb|AAT36373.1| ribosomal protein subunit 4 [Hymenodon sphaerothecius] Length = 195 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R V+I SYRCK D I +K + K V + ++ Sbjct: 93 GMAPTIPGARQLINHRHILVNDRIVDIPSYRCKPQDFITIKNRRKSQTIVNKNIDFYQKY 152 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 193 >gi|67035622|gb|AAY62742.1| small ribosomal protein subunit 4 [Dicnemon seriatum] Length = 194 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 33 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQESQAMIIKNIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|33413237|emb|CAD86754.1| ribosomal protein small subunit 4 [Leptodontium flexifolium] Length = 180 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 78 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDCITINDRKKSQIMITKNIDFSQKS 137 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPHHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 178 >gi|29422399|gb|AAO84595.1| small ribosomal protein 4 [Leiomela aristifolia] Length = 198 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNXRIVDIPSYRCKPXDFITIKDRQKSQAIISKNIDFYQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSXENKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|121761726|gb|ABM64950.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761728|gb|ABM64951.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761746|gb|ABM64960.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761769|gb|ABM64971.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761869|gb|ABM65020.1| ribosomal protein S4 [Plagiomnium ellipticum] Length = 195 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|20531101|gb|AAM27371.1| ribosomal protein 4 [Dicnemon seriatum] Length = 191 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQESQAMIIKNIDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|78369629|gb|ABB43044.1| ribosomal protein 4 [Calymperes palisotii] Length = 201 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 99 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIVKNINFSPKY 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 159 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 199 >gi|293633971|gb|ADE60365.1| ribosomal protein subunit 4 [Atrichum androgynum] Length = 182 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A +++ Sbjct: 80 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKNRQEFQAITTRNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 180 >gi|295311734|ref|YP_003587470.1| ribosomal protein S4 [Oncidium Gower Ramsey] gi|254833111|gb|ACT83114.1| ribosomal protein S4 [Oncidium Gower Ramsey] Length = 201 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G +RS L Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKIPRSRS---DLQTQLHSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKARDIITTKDKERSKALIQNYLVSSPRGELPNHLTIDSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 176 NQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|118626149|emb|CAL39372.1| small ribosomal protein 4 [Lophozia longidens] Length = 202 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSMITKNLNLFQKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|33413253|emb|CAD86761.1| ribosomal protein small subunit 4 [Syrrhopodon prolifer] Length = 193 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P + ++ K S + ++L KQK++ +YG ++E++ Sbjct: 1 KIIRRLGTLSGLTNKTP---QLKSSSINQSTSNKKISQYRIRLEEKQKLRFHYG-LTERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VN Sbjct: 57 LLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVNNRIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKD 188 I SY+CK D I +K + K +++ + ++ +P ++ N +I L Sbjct: 117 IPSYQCKPQDFITIKDQQKYQTMIIKNTNFFSKHKIPNHLIFNSVEKKGLVNQI---LDQ 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|162415092|gb|ABX89120.1| ribosomal protein S4 [Didymodon vinealis] Length = 189 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNVGFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|121761712|gb|ABM64943.1| ribosomal protein S4 [Plagiomnium undulatum] Length = 195 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 10/199 (5%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + + S P + K S + ++L KQK++ +YG I+E+ Sbjct: 3 RIIRRLGALPGPTNKTPQLKSSSINPSTSNK----KISQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V Sbjct: 58 QLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRLV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 118 DIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLKKKGLVNQI---LD 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 RDSIDLKINELLVVEYYSR 193 >gi|21914142|gb|AAM81293.1| ribosomal protein subunit 4 [Acidodontium ramicola] Length = 197 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 5/129 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R +NI SYRCK D I +K + K + + L Sbjct: 95 GLAPTIPGARQLVNHRHILVNDRIINIPSYRCKPEDSITIKDRQKSQTIISKNLNL---- 150 Query: 164 VPEYISVNH 172 P+Y + NH Sbjct: 151 YPKYKTPNH 159 >gi|6002075|emb|CAA58946.1| ribosomal protein S4 [Ranunculus lingua] Length = 196 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRAL 147 Query: 153 VLEASQLAERD-VPEYISVN 171 + + D +P++++++ Sbjct: 148 IQNFMDSSPHDELPKHLTLH 167 >gi|254391328|ref|ZP_05006532.1| 30S ribosomal protein S4 [Streptomyces clavuligerus ATCC 27064] gi|294811568|ref|ZP_06770211.1| 30S ribosomal protein S4 [Streptomyces clavuligerus ATCC 27064] gi|326440047|ref|ZP_08214781.1| 30S ribosomal protein S4 [Streptomyces clavuligerus ATCC 27064] gi|197705019|gb|EDY50831.1| 30S ribosomal protein S4 [Streptomyces clavuligerus ATCC 27064] gi|294324167|gb|EFG05810.1| 30S ribosomal protein S4 [Streptomyces clavuligerus ATCC 27064] Length = 205 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 106/208 (50%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + K K R +G L + R Y PG HG+ RK Y ++L KQ+++ Sbjct: 1 MPNQSRPKVKKSRALGIALTPKAVKYFEARPYPPGEHGRGRKQNSDY-KVRLLEKQRLRA 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +ISE++ + A ++ G T L+ LE RLD ++ R+ TI+ ARQ V H H Sbjct: 60 QY-NISERQMARAYDRARKAEGKTGEALVVELERRLDALLLRSGIARTIYQARQMVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS--KQLASVL-EASQLAERDVPEYISVNHDNMVA 177 + VNG V+ S+R + DV+ V+++S K L V E A+ + P Y+ VN + Sbjct: 119 IEVNGGKVDKPSFRVRPDDVVMVRERSRAKSLFQVAREGGFAADGETPRYLQVNLKALAF 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 R P K++ PVI LVVE+Y+ Sbjct: 179 RMDRDPQR-KEI--PVICDEQLVVEYYA 203 >gi|12330518|gb|AAG52796.1| ribosomal protein 4 [Scopelophila cataractae] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVLFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VBI SY CK D I +K + K A + + ++ Sbjct: 87 GIAPTIPGARQLVNHRHILVNNRLVBIPSYCCKPQDFITIKDRQKSQALITKHIDFYQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|6002025|emb|CAA58919.1| ribosomal protein S4 [Alstroemeria aurantiaca] Length = 196 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 4/138 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE R Sbjct: 32 LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASV 153 LD ++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 91 LDNTLFRLGMASTIPGARQLVNHRHILVNGRVVDIPSYRCKPRDIITTKDKQRSKALIQN 150 Query: 154 LEASQLAERDVPEYISVN 171 AS E ++P++++++ Sbjct: 151 YIASSPRE-ELPKHLTID 167 >gi|317046175|ref|YP_004072464.1| ribosomal protein S4 [Corynocarpus laevigata] gi|309252892|gb|ADO60312.1| ribosomal protein S4 [Corynocarpus laevigata] Length = 201 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRT----GSDLKNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTISQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNG V+I SYRCK D+I K Q+S+ L + L++S ++P+ ++++ Sbjct: 116 ILVNGCIVDIPSYRCKPRDIITAKDEQRSRALIQNYLDSS--PHEELPKDLTLHPVQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KSVGLKI--NELLVVEYYSR 199 >gi|289599893|gb|ADD12897.1| ribosomal protein S4 [Doliocarpus validus] Length = 186 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 12/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK TRS L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 10 RPK----TRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 62 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDII 121 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK + K A + ++P++++++ +I S K V + LV Sbjct: 122 TVKDEHKSRALIQNYLDSFPHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLV 178 Query: 201 VEFYSR 206 VE+YSR Sbjct: 179 VEYYSR 184 >gi|14090480|gb|AAK53525.1| small ribosomal protein 4 [Dicnemon calycinum] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + + A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQESQAMIIKNIDFSQKS 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFSSLEKKGLVNQI---LDQKSIGLKINELLVVEYYSR 180 >gi|15145842|gb|AAK83539.1| rps4 [Tayloria serrata var. tenuis] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILINDRIVDIPSYRCKPQDFITIKDRLKSQAIINKNIEFNQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|307828388|gb|ADN94992.1| small ribosomal protein 4 [Fossombronia truncata] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 28 KMSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI V+ + K + + + L ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKNMSLFQK- 145 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + NH + +T R I ++ + + LVVE+YSR Sbjct: 146 -PK--TPNHLTLDSTRFRGSINQTIDRDWINLKINELLVVEYYSR 187 >gi|293634007|gb|ADE60383.1| ribosomal protein subunit 4 [Notoligotrichum trichodon] Length = 188 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 86 GMAPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNFLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|14090488|gb|AAK53529.1| small ribosomal protein 4 [Syrrhopodon incompletus] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 80 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIVKNVNFSPKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPSHLTFNSVEKKGLVNQI---LDHESIGLKINELLVVEYYSR 180 >gi|3098188|gb|AAC15542.1| small ribosomal protein 4 [Plagiomnium affine] Length = 192 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 190 >gi|63078570|gb|AAY29372.1| ribosomal protein S4 [Chionoloma bombayense] Length = 197 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R +NI SYRCK D I +K + K + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRILNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGLVNQI---LDQELIGLKINELLVVEYYSR 195 >gi|121761767|gb|ABM64970.1| ribosomal protein S4 [Plagiomnium ellipticum] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|6002087|emb|CAA58953.1| ribosomal protein S4 [Tradescantia virginiana] Length = 196 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 6/172 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G +RS L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKKPRSRS---DLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNH+H Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHKH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 +LVNGR V+I SYRCK D+I K K + A + + L+ ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSISLSPHEELPKHLTFD 167 >gi|28194715|gb|AAO33619.1|AF480974_1 ribosomal protein S4 [Scopelophila cataractae] Length = 196 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVLFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K A + + ++ Sbjct: 94 GIAPTIPGARQLVNHRHILVNNRLVNIPSYCCKPQDFITIKDRQKSQALITKHIDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|3914839|sp|O19990|RR4_BELCH RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292742|emb|CAA92533.1| ribosomal protein S4 [Belamcanda chinensis] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGRVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I K K + A Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 153 VLEASQLA-ERDVPEYISVN 171 + L+ ++P +++++ Sbjct: 141 IQNYIALSPHEELPNHLTID 160 >gi|317134112|ref|YP_004123445.1| ribosomal protein S4 [Rhizanthella gardneri] gi|255985043|gb|ACU46590.1| ribosomal protein S4 [Rhizanthella gardneri] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 12/176 (6%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + L+L KQK + +YG ++E++ + A +++G T L+ LE R Sbjct: 32 LQIQLRSIKKSQYRLRLEEKQKFRFHYG-LTERQLLKYVRIAGKTKGSTGRVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNG V+I +YRCK D+I K K + A +++ Sbjct: 91 LDNILFRLGMASTIPGARQLVNHRHILVNGDIVDIPNYRCKPLDIIAAKDKERSKAMIIK 150 Query: 156 ASQLAER--DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++P ++ S+ H V + S + + LVVE+YSR Sbjct: 151 NYLISSSHGELPNHLTMDSLQHKGFVNQIIDSKCS------GLKINELLVVEYYSR 200 >gi|118626117|emb|CAL39358.1| small ribosomal protein 4 [Barbilophozia quadriloba var. glareosa] gi|118627546|emb|CAL39406.1| small ribosomal protein 4 [Barbilophozia quadriloba var. quadriloba] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNNTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63191803|gb|AAY34861.1| small ribosomal protein subunit 4 [Erythrophyllopsis fuscula] Length = 199 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVLFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 197 >gi|293634023|gb|ADE60391.1| ribosomal protein subunit 4 [Oligotrichum tenuirostre] Length = 185 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ Sbjct: 83 GMAPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|184127931|gb|ACC67865.1| ribosomal protein small subunit 4 [Danaea wendlandii] Length = 190 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 100/173 (57%), Gaps = 20/173 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYCIRLEAKQRLRFNYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 P+I AARQ VNH+H+LVN R V+I SYRCK D+I V+ ++ + V + ++D Sbjct: 85 GMSPSIPAARQLVNHKHILVNNRLVDIPSYRCKPKDIINVRNQTNSHSLVKRNLESLDKD 144 Query: 164 -VPEYISVN--HD-------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PE+++++ D N + T I ++ ++ LVVE+YSR Sbjct: 145 KIPEHLTLSLLEDDKPQGLVNKIVTRDSIGLNINEL---------LVVEYYSR 188 >gi|24473832|gb|AAL82760.1| small ribosomal subunit protein 4 [Plagiobryum purpurascens] Length = 198 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + T S + + K S + ++L KQK++ +YG I+E+ Sbjct: 6 RIKRRLGALPGLTNKTPQLKTNSINQSISNK----KISQYRIRLEEKQKLRFHYG-ITER 60 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 61 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 120 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR----IPS 184 NI SYRCK D I +K + K + + L ++ Y NH + F++ + Sbjct: 121 NIPSYRCKPEDSITIKDRQKSQTIISKNLNLYQK----YKKPNH--LTYNFLKKKGLVNQ 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 ILDRESIGLKINELLVVEYYSR 196 >gi|51860461|gb|AAU11367.1| ribosomal protein small subunit 4 [Gnetum gnemon] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + Q L+ KQK++ ++G ++E++ R + A + +G T L+ LE R Sbjct: 24 RRSSRPWWKKSQHLACLQEKQKIRFHFG-LTERQLRQYVQIAKKVQGSTGQVLLQLLEMR 82 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVL 154 LD I+Y+ TI ARQ VNHRH+LVN VNI SYRCK DVI +K K+ QL +++ Sbjct: 83 LDNILYQLGLAGTIPGARQLVNHRHILVNDYVVNIPSYRCKPQDVITIKGKNPDQLKTII 142 Query: 155 --EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ E+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 143 TRNRNKAREKKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 193 >gi|63078609|gb|AAY29391.1| ribosomal protein S4 [Pseudosymblepharis richardsii] Length = 197 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTFNSLEKKGIVNQI---LDQELIGLKINELLVVEYYSR 195 >gi|42794675|gb|AAS45734.1| Rps4 [Satyria allenii] Length = 211 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 46 YHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLFQLLEMRLDNILFRLGMAS 104 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLA 160 TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + + Sbjct: 105 TIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKRK 164 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 165 RKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|37548889|gb|AAO32713.1| ribosomal protein 4 [Steereobryon subulirostrum] Length = 183 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 81 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQEFQAIITRNINFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 181 >gi|50346784|ref|YP_053157.1| ribosomal protein S4 [Nymphaea alba] gi|62287256|sp|Q6EW46|RR4_NYMAL RecName: Full=30S ribosomal protein S4, chloroplastic gi|50250329|emb|CAF28595.1| ribosomal protein S4 [Nymphaea alba] Length = 201 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A ++ G T L+ LE R Sbjct: 32 LRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKANGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD I++R TI ARQ VNH H+LVNGR V+I SYRCK D+I K K A + Sbjct: 91 LDNILFRLGMASTIPGARQLVNHGHILVNGRLVDIPSYRCKPRDIITTKDKQGSRALIQN 150 Query: 154 -LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++S AE +P++++++ +I S K V V L+VE+YSR Sbjct: 151 HMDSSSNAE--LPKHLTLHSFQYKGVVNQIIDS-KWVGLKV--NELLIVEYYSR 199 >gi|118626161|emb|CAL39378.1| small ribosomal protein 4 [Lophozia wenzelii] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQXLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEXGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|7576773|gb|AAF63983.1| small ribosomal protein 4 [Polytrichadelphus magellanicus] Length = 192 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D + +K + + A + +++ Sbjct: 90 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFVTIKNRQESQAIITRNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNSLEKKGLVNQI---LNRESIGLKINELLVVEYYSR 190 >gi|5911470|emb|CAA58930.1| ribosomal protein S4 [Delphinium staphisagria] Length = 196 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 29 GSDLRNQSRFGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKSK L Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKARDIITTRDEQKSKVL 147 Query: 151 -ASVLEASQLAERDVPEYISVN 171 + L++S ++P++++++ Sbjct: 148 IQNYLDSS--PHEELPKHLTLH 167 >gi|306486209|gb|ADM92746.1| ribosomal protein S4 [Franklinia alatamaha] Length = 198 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 19/176 (10%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 32 QSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 90 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A + L+ Sbjct: 91 ILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQNSLD 150 Query: 156 ASQLAERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +S ++P+++++ + +V + D + V ++ N LVVE+YSR Sbjct: 151 SS--PHEELPKHLTLYPFQYKGLVNQII-------DSKW-VGLKINELLVVEYYSR 196 >gi|118625949|emb|CAL39296.1| small ribosomal protein 4 [Anastrophyllum auritum] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSK SY + Sbjct: 1 MSRYRGPRXKIIRRLGA---------------LPGLTSKTLKSKSSYIDRSTSNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEY 167 I ARQ VNHRH+ VN +V+I SY C+ GD+I ++ K K + + + L ++ +P + Sbjct: 105 IPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRTKQKSQSIITKNINLFQKLKIPSH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + ++ + + LVVE+YSR Sbjct: 165 LTFDLTQLRGS---VNQTVNREWVDLKINELLVVEYYSR 200 >gi|118626147|emb|CAL39371.1| small ribosomal protein 4 [Anastrepta orcadensis] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNNTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63191885|gb|AAY34902.1| small ribosomal protein subunit 4 [Scopelophila cataractae] Length = 194 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVLFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VBI SY CK D I +K + K A + + ++ Sbjct: 92 GIAPTIPGARQLVNHRHILVNNRLVBIPSYCCKPQDFITIKDRQKSQALITKHIDFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|121761718|gb|ABM64946.1| ribosomal protein S4 [Plagiomnium rostratum] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|57234752|ref|YP_181245.1| 30S ribosomal protein S4 [Dehalococcoides ethenogenes 195] gi|90101687|sp|Q3Z954|RS4_DEHE1 RecName: Full=30S ribosomal protein S4 gi|57225200|gb|AAW40257.1| ribosomal protein S4 [Dehalococcoides ethenogenes 195] Length = 207 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 27/220 (12%) Query: 1 MSKRESSKHKIDRRIGENLW-------------GRPKSPVNTRSYGPGLHGQRRKSKPSY 47 MS+ + ++ RR G+ L+ RPK+P GP L RR S Sbjct: 1 MSRETGAVCRMCRRSGDKLFLKGDKCVTKCVFEKRPKAP------GPQLGRPRRLSDR-- 52 Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 G QLR KQ ++ YG ++E++FR F A G T N++ LE RLD +++R F Sbjct: 53 -GQQLRHKQSIRWSYG-MTERQFRRFFGLATAQPGVTGDNMMILLERRLDNVLFRLGFGT 110 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPE 166 + ARQ V H H+LVNG+ +I SY KEG I V++ SK A A + + +P Sbjct: 111 SRAQARQIVMHGHILVNGQKTDIPSYLVKEGQEITVRETSKATAYFKTLAENIEAKAIPG 170 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++S++ + + +P++ D+ Q VVE+YSR Sbjct: 171 WLSLDRKTLSGKVISLPAA-GDIDARFDAQT--VVEYYSR 207 >gi|66866218|gb|AAY57781.1| small ribosomal protein 4 [Cryptopodium bartramioides] Length = 207 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K Sbjct: 100 GMTPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQK 144 >gi|290467477|gb|ADD25856.1| small ribosomal protein 4 [Hymenophyllum peltatum] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 18 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + + R Sbjct: 77 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDIITVRNRPSSYSGSKETIEFSRRK 136 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 137 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 180 >gi|24473804|gb|AAL82745.1| small ribosomal subunit protein 4 [Leptostomum menziesii] Length = 196 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVVFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTYNSLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|157689462|gb|ABV65287.1| ribosomal protein S4 [Datisca cannabina] Length = 174 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 25/185 (13%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 2 GSDLKNQARSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLL 60 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I K QKS+ L Sbjct: 61 EMRLDNIIFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITAKDEQKSRAL 120 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVV 201 + L++S ++P++++++ P K + +I + LVV Sbjct: 121 IQNYLDSS--PHEELPKHLTLH-----------PFQYKGLVNQIIDSKWIGLKINELLVV 167 Query: 202 EFYSR 206 E+YSR Sbjct: 168 EYYSR 172 >gi|33413249|emb|CAD86759.1| ribosomal protein small subunit 4 [Calymperes palisotii subsp. richardii] Length = 192 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 90 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIVKNINFSPKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 190 >gi|15145852|gb|AAK83544.1| rps4 [Tayloria froelichiana] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|17154619|emb|CAC83922.1| ribosomal protein S4 [Ferraria crispa] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGRVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVN 171 AS E ++P +++++ Sbjct: 141 IQNYIASSPHE-ELPNHLTID 160 >gi|293611960|gb|ADE48424.1| ribosomal protein 4 [Ceratozamia hildae] Length = 179 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 18 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRC DVI V+ + + A + + L+++D Sbjct: 77 GMAPTIPGARQLVNHRHILVNDRVVDIPSYRCNPRDVITVRDQQRSRAMIDKNLDLSQKD 136 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 137 QMPNHLTLHSSRYKGLVHQIIDS-KWISLKI--NELLVVEYYSR 177 >gi|162415080|gb|ABX89114.1| ribosomal protein S4 [Tortula atrovirens] Length = 187 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMINKNVDFYQKS 144 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLINQI---LDQESIGLNINELLVVEYYSR 185 >gi|37548867|gb|AAO32702.1| ribosomal protein 4 [Pogonatum pensilvanicum] Length = 192 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 17/194 (8%) Query: 26 PVNTRSYGPGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSI 73 P+ PGL + KSK SY + ++L KQK++ +YG ++E++ Sbjct: 1 PIRRLGALPGLTNKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKY 59 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY Sbjct: 60 VRIARKAKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNSNLVDIPSY 119 Query: 134 RCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 C+ GD+I +K K K + + + + +P +++ + D + + + + Sbjct: 120 DCEPGDIITIKNKQKSQSIISKNLBSFKKSKIPSHLTFDSDTIQGS---VNQRVNREWVN 176 Query: 193 VIMQPNLVVEFYSR 206 +I+ LVVE+YSR Sbjct: 177 LIINELLVVEYYSR 190 >gi|121761835|gb|ABM65003.1| ribosomal protein S4 [Plagiomnium novae-zealandiae] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|118627544|emb|CAL39405.1| small ribosomal protein 4 [Lophozia perssonii] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCELGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKLKIPSHLTFDSTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|67035696|gb|AAY62779.1| small ribosomal protein subunit 4 [Bryomanginia saint-pierrei] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 7/163 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + K +++ SQ + Sbjct: 97 GMAPTIPGARQLVNHKHILVNNRIINIPSYRCKPQDFITIKDQQK-FQAMVNFSQ--KYK 153 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + L+VE+YSR Sbjct: 154 VPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLIVEYYSR 193 >gi|157689502|gb|ABV65307.1| ribosomal protein S4 [Ixerba brexioides] Length = 197 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 34/198 (17%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ G L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 RPKA-------GSNLRNQSRSVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I +R TI ARQ VNHRH+LVNG V+I SYRCK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNIFFRLGMASTIPQARQLVNHRHILVNGHIVDIPSYRCKPRDII 130 Query: 142 EVK--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVI-- 194 + QKS+ L + Y+ + H+ + PS K + +I Sbjct: 131 TARDEQKSRAL-------------IQNYLDSSFHFHEELTKHLTLYPSQYKGLVNQIIDS 177 Query: 195 ------MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 178 KWVGLKINELLVVEYYSR 195 >gi|118625941|emb|CAL39292.1| small ribosomal protein 4 [Lophozia jamesonii] gi|118626113|emb|CAL39356.1| small ribosomal protein 4 [Lophozia stolonifera] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSSYIDRSTSNRKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKSKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|289599955|gb|ADD12928.1| ribosomal protein S4 [Tetracera oblongata] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK TRS L Q R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 RPK----TRS---DLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 57 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 58 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDII 117 Query: 142 EVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 VK + K A + L++S ++P++++++ +I S K V + Sbjct: 118 IVKDEHKSRALIQNYLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NEL 172 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 173 LVVEYYSR 180 >gi|3098186|gb|AAC15541.1| small ribosomal protein 4 [Mnium hornum] Length = 199 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDHLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|78369621|gb|ABB43040.1| ribosomal protein 4 [Calymperes tenerum] Length = 198 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + + Sbjct: 96 GIAPTIPGARQLVNHRHILVNKRIVNIPSYQCKLQDAITIKDQQKYHTMIVKNTNFSPKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 156 KIPSHLMFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|307602363|gb|ADN68063.1| ribosomal protein S4 [Juniperus sabina var. arenaria] gi|307602365|gb|ADN68064.1| ribosomal protein S4 [Juniperus sabina var. davurica] gi|307602367|gb|ADN68065.1| ribosomal protein S4 [Juniperus sabina var. sabina] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIMKK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E SQ + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEISQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|289599957|gb|ADD12929.1| ribosomal protein S4 [Tetracera parviflora] Length = 167 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 98/171 (57%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L+ Sbjct: 60 ILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLD 119 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 SS--PHEELPKHLTLHAFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 165 >gi|118627512|emb|CAL39390.1| small ribosomal protein 4 [Lophozia sudetica] Length = 202 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + + ++ + + LV Sbjct: 138 TIRNKRKSQSIITQNTNLFQKLKIPSHLTFELAQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|17025849|gb|AAL32090.1| ribosomal protein 4 [Mitthyridium sp. Wall 3685] Length = 199 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E+K + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERKLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNMVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N V + L + + LVVE+YSR Sbjct: 157 KTPTHLTF---NFVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|20531103|gb|AAM27372.1| ribosomal protein 4 [Blindia magellanica] Length = 192 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D +K + K A V++ +++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFFTIKDRQKSQAMVIKNIDFSQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 150 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 190 >gi|289599868|gb|ADD12885.1| ribosomal protein S4 [Davilla cf. kunthii Zartman s.n.] Length = 166 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 2 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 60 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R VNI SYRCK D+I VK + K A + L++S Sbjct: 61 FRLGMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 120 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 121 --PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 164 >gi|78369643|gb|ABB43051.1| ribosomal protein 4 [Calymperes couguiense] Length = 198 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + + Sbjct: 96 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKLQDFITIKDQQKYQTMIVKNTNFSPKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N + L + + LVVE+YSR Sbjct: 156 KIPSHLMFNSVEKKGV---VNQLLDQESIGLKINELLVVEYYSR 196 >gi|305672195|gb|ADM63521.1| ribosomal protein S4 [Pittosporum undulatum] Length = 173 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R PTI ARQ VNHRH+LVN R V+I SYRCK D+I + + A Sbjct: 79 EMRLDNILFRLGMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITARDEQNSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S E +P++++++ Sbjct: 139 IQNYLDSSPHDE--LPKHLTLH 158 >gi|28194749|gb|AAO33636.1|AF480991_1 ribosomal protein S4 [Geheebia gigantea] Length = 196 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|37683556|gb|AAQ98829.1| small ribosomal protein 4 [Pogonatum nanum] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDNIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 146 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 187 >gi|46810988|gb|AAT01812.1| small ribosomal protein 4 [Anastrophyllum michauxii] Length = 197 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + L ++ +P +++ + + + + ++ + + LV Sbjct: 133 TIRSKQKSQSIVTKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVDLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|37548845|gb|AAO32691.1| ribosomal protein 4 [Notoligotrichum australe] Length = 184 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 25 SQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGM 83 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + A + + +++ + Sbjct: 84 TPTIPGARQLVTHKHILVNNRIVNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKYKI 143 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 144 PNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 182 >gi|32401840|gb|AAP80908.1| small ribosomal protein 4 [Podocarpus matudae var. reichei] Length = 217 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 5/138 (3%) Query: 29 TRSYGPGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 R+ PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T Sbjct: 2 ARNNLPGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGST 60 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K Sbjct: 61 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIK 120 Query: 145 QKSKQLASVLEASQLAER 162 + + + + + L+++ Sbjct: 121 DRQRSMNIITKNLDLSKK 138 >gi|14090432|gb|AAK53501.1| small ribosomal protein 4 [Syrrhopodon leprieurii] Length = 182 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + ++ Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFFSKH 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLIFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|29027220|gb|AAN47172.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 189 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITIKDRQKSQAIIGKNLDFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|29027204|gb|AAN47164.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027206|gb|AAN47165.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027208|gb|AAN47166.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027210|gb|AAN47167.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027212|gb|AAN47168.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027214|gb|AAN47169.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027216|gb|AAN47170.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027218|gb|AAN47171.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027222|gb|AAN47173.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027224|gb|AAN47174.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027226|gb|AAN47175.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027228|gb|AAN47176.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027230|gb|AAN47177.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027232|gb|AAN47178.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027234|gb|AAN47179.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027236|gb|AAN47180.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027238|gb|AAN47181.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 194 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITIKDRQKSQAIIGKNLDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|63191724|gb|AAY34822.1| small ribosomal protein subunit 4 [Flowersia campylopus] Length = 195 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISXYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDRQKSQAIIXKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|254995581|emb|CAO82749.1| ribosomal protein S4 [Lycopodium obscurum] Length = 172 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 96/167 (57%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + + + A + + ++ ++ Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITARDRPESRAIIAKNNKFSQTY 129 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ S+ + +V + S + + LVVE+YSR Sbjct: 130 KVPNHLTLQSLQNKGLVNEIIDRES------IDLNINELLVVEYYSR 170 >gi|3914821|sp|O19986|RR4_ALOVE RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292737|emb|CAA92529.1| ribosomal protein S4 [Alophia veracruzana] Length = 182 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 8/127 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RP+S ++ L Q R K S + ++L KQK++ +YG ++E++ A +++ Sbjct: 18 RPRSGID-------LKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDII 129 Query: 142 EVKQKSK 148 K K + Sbjct: 130 TTKDKER 136 >gi|46810992|gb|AAT01814.1| small ribosomal protein 4 [Austrofossombronia peruviana] Length = 168 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 9 SQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRLGM 67 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-V 164 PTI ARQ VNH+H+LV+ +VNI SY CK GDVI + + + + + ++ L +R Sbjct: 68 APTIPGARQLVNHKHILVDDDTVNIPSYSCKPGDVITARNRHRSQSIIAKSMSLFQRSKT 127 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 128 PNHLTLDSTRLRGS---INQTIDRDWIDLKINELLVVEYYSR 166 >gi|12330456|gb|AAG52765.1| ribosomal protein 4 [Andreaea rothii] gi|20531051|gb|AAM27349.1| ribosomal protein 4 [Andreaea rothii] Length = 188 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 27 KMSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 86 GMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIITKNIDCSQKX 145 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ ++ + R LK + LVVE+YSR Sbjct: 146 KIPNHLIFNSLQKKGLINQIIDRESIGLK-------INELLVVEYYSR 186 >gi|157689508|gb|ABV65310.1| ribosomal protein S4 [Krameria lanceolata] Length = 193 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 24 LRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMR 82 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LAS 152 LD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I K K K + + Sbjct: 83 LDNILFRLGMASTIPQARQLVNHRHILVNDCIVDIPSYRCKPRDIITAKDKQKSRTLIQN 142 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S ++P+++++N +I +S K V + LVVE+YSR Sbjct: 143 YLDSS--PHEELPKHLTINPLQYKGLVNQIIAS-KWVSLKI--NELLVVEYYSR 191 >gi|110590040|gb|ABG77463.1| ribosomal protein small subunit 4 [Equisetum laevigatum] Length = 178 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 10/173 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S +G++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 9 QSIQKKVSQYGIRLEAKQRLRFNYG-LTERQLLNYVRIARGAKGSTGQILLQLLEMRLDN 67 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV---KQKSKQLASVLE 155 I++R FVPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + K L+ LE Sbjct: 68 ILFRLGFVPTIPSARQLINHRHILVNNRIVDVPSFHCKPKDIITIGAPKTYQSILSKRLE 127 Query: 156 ASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A+ +PE+ +S++ FV + + + + LVVE+YSR Sbjct: 128 S--FAKDQIPEHLTLSLSEPKKPKGFVNYLINRESIGLKI--NELLVVEYYSR 176 >gi|39546753|gb|AAR28103.1| small ribosomal protein 4 [Alophosia azorica] Length = 194 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIAKGAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 P+I ARQ VNH+H+LVN VNI SYRCK D I +K + K A +L+ +++ Sbjct: 92 GMAPSIPGARQLVNHKHILVNDCIVNIPSYRCKPQDFITIKNRQKSQAIILKNMDFSQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L D+ + LVVE+YSR Sbjct: 152 KIPNHLTFNSFEKKGLVNQILDRELIDLK----INELLVVEYYSR 192 >gi|18027944|gb|AAL55896.1| ribosomal protein S4 [Onychium japonicum] Length = 191 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L AKQ+++ YG ++E++ + A Sbjct: 4 PGLVGKNKTSNSGEFRVASDQSVLKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T + LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRCK Sbjct: 63 KTRGSTGQVPLQLLEMRLDNIIFRLGMASTIPAARQLVNHRHILVNHRIVDIPSYRCKPR 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ ++ +V + +A +P++ +S++ A V ++ + V + Sbjct: 123 DIITIRNRTTS-HNVAKGESIAGGGIPDHLTLSLSKTGEPAGLVNQMANRESVDLDI--N 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|15145856|gb|AAK83546.1| rps4 [Tayloria hornschuchii] Length = 189 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKNRLKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSVKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|63191833|gb|AAY34876.1| small ribosomal protein subunit 4 [Syntrichia ruralis] Length = 199 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLINQI---LNQESIGLKINELLVVEYYSR 197 >gi|28194693|gb|AAO33608.1|AF480963_1 ribosomal protein S4 [Anoectangium aestivum] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSEVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|12330544|gb|AAG52809.1| ribosomal protein 4 [Paludella squarrosa] gi|42718112|gb|AAS38478.1| rps4 [Paludella squarrosa] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + +VVE+YSR Sbjct: 146 KIPNHLTYNSLKKQGLINQI---LDRESIGLKINELIVVEYYSR 186 >gi|73748343|ref|YP_307582.1| 30S ribosomal protein S4 [Dehalococcoides sp. CBDB1] gi|289432391|ref|YP_003462264.1| ribosomal protein S4 [Dehalococcoides sp. GT] gi|90101688|sp|Q3ZZP7|RS4_DEHSC RecName: Full=30S ribosomal protein S4 gi|73660059|emb|CAI82666.1| ribosomal protein S4 [Dehalococcoides sp. CBDB1] gi|288946111|gb|ADC73808.1| ribosomal protein S4 [Dehalococcoides sp. GT] Length = 207 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 27/220 (12%) Query: 1 MSKRESSKHKIDRRIGENLW-------------GRPKSPVNTRSYGPGLHGQRRKSKPSY 47 MS+ + ++ RR G+ L+ RPK P GP L RR S Sbjct: 1 MSRETGAVCRMCRRSGDKLFLKGDKCVTKCVFEKRPKPP------GPQLGRPRRLSDR-- 52 Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 G QLR KQ ++ YG ++E++FR F A+ G T N++ LE RLD +++R F Sbjct: 53 -GQQLRQKQSIRWSYG-MTERQFRRFFGLANAQPGVTGDNMMILLERRLDNVLFRLGFGT 110 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEASQLAERDVPE 166 + ARQ V H H+LVNG+ +I SY KEG I V++ SK A A + + +P Sbjct: 111 SRAQARQIVMHGHILVNGQKTDIPSYLIKEGQEITVRETSKATAYFKTLAENIEAKAIPG 170 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++S++ + + +P++ D+ Q VVE+YSR Sbjct: 171 WLSLDRKTLSGKVISLPNA-GDIDARFDAQT--VVEYYSR 207 >gi|328541078|gb|AEB21763.1| ribosomal protein S4 [Acromastigum cavifolium] Length = 199 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKSKSSYNDRSASNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNNMVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWINIKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|151370786|gb|ABS11011.1| ribosomal protein subunit 4 [Dendro-hypnum reinwardtii] Length = 194 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGA-LLGLTNKTAQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 58 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASV 153 I SYRCK D I +K + K A + Sbjct: 118 IPSYRCKPQDFITIKDRQKSQAII 141 >gi|28194721|gb|AAO33622.1|AF480977_1 ribosomal protein S4 [Trichostomum crispulum] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNSIVNIPSYRCKPQDFITIKDRQKSQVIITKNVDFSQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|47606932|gb|AAT36386.1| ribosomal protein subunit 4 [Hymenodontopsis mnioides] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITIKDRQKSQAIIGKNLDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|289599913|gb|ADD12907.1| ribosomal protein S4 [Hibbertia echiifolia] Length = 165 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 13/171 (7%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVNG V+I SYRCK D+I VK + K A + L++S Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++P++++++ +I S ++++ N LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLINQIIDS-----KWIVLKINELLVVEYYSR 163 >gi|37683558|gb|AAQ98830.1| small ribosomal protein 4 [Pogonatum gracilifolium] Length = 187 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFIIIKNRQKSQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|28194671|gb|AAO33597.1|AF480952_1 ribosomal protein S4 [Barbula unguiculata] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D+I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDLITINDRQKSQVMITKNVDFFQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLIFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|118627514|emb|CAL39391.1| small ribosomal protein 4 [Lophozia obtusa] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|311901162|gb|ADQ13131.1| small ribosomal protein 4 [Lomariopsis pollicina] Length = 178 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVLLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + + L A Sbjct: 75 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSY-NALRVKSPAGDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN A V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEDNKPAGLVNCIANRESVNLNI--NELLVVEYYSR 176 >gi|8650430|gb|AAF78207.1| small ribosomal protein 4 [Equisetum bogotense] Length = 187 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 10/173 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S +G++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 18 QSIQKKVSQYGIRLEAKQRLRFNYG-LTERQLLNYVRIARGAKGSTGQILLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV---KQKSKQLASVLE 155 I++R FVPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + K L+ LE Sbjct: 77 ILFRLGFVPTIPSARQLINHRHILVNNRIVDVPSFHCKPKDIITIGAPKTYQSILSKRLE 136 Query: 156 ASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A+ +PE+ +S++ FV + + + + LVVE+YSR Sbjct: 137 S--FAKDQIPEHLTLSLSEPKKPKGFVNYLINRESIGLKI--NELLVVEYYSR 185 >gi|67035746|gb|AAY62804.1| small ribosomal protein subunit 4 [Polymerodon andinus] Length = 197 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGZVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VBI SYRCK D I K + K + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNBRXVBIPSYRCKPQDFITXKDRQKSQXXIXKNIDFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 155 KXPNHLTXNSLXKKGLVNQI---LDXESIXLKINELLVVEYYSR 195 >gi|32401838|gb|AAP80907.1| small ribosomal protein 4 [Podocarpus latifolius] Length = 222 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 5/133 (3%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 12 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 71 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDRQRS 130 Query: 150 LASVLEASQLAER 162 + + + L+++ Sbjct: 131 MNIITKNLDLSKK 143 >gi|17025871|gb|AAL32100.1| ribosomal protein 4 [Mitthyridium sp. Streimann 63086] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 93 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKSQDFITIKDQQKYQTMIVKNTKFS--- 149 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 150 -PKHKTPNHLTFNSVEKKGLVNQILNQESIGLKINELLVVEYYSR 193 >gi|262192904|gb|ACY30469.1| small ribosomal subunit protein 4 [Bryum recurvulum] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ V+HRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 86 GMAPTIPGARQLVSHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 144 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 145 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 186 >gi|37039871|gb|AAQ88209.1| small ribosomal protein 4 [Andreaea rothii] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 34 KMSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + +++ Sbjct: 93 GMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIITKNIDCSQKY 152 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ ++ + R LK + LVVE+YSR Sbjct: 153 KIPNHLIFNSLQKKGLINQIIDRESIGLK-------INELLVVEYYSR 193 >gi|121761816|gb|ABM64994.1| ribosomal protein S4 [Plagiomnium arbuscula] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|32401836|gb|AAP80906.1| small ribosomal protein 4 [Podocarpus henkelii] Length = 216 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 5/133 (3%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 6 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 64 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 65 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDRQRS 124 Query: 150 LASVLEASQLAER 162 + + + L+++ Sbjct: 125 MNIITKNLDLSKK 137 >gi|12642218|gb|AAK00191.1| rps4 [Encalypta armata] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD IV+R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN VNI SYRCK D I +K + K A +++ +++ Sbjct: 93 GMASTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFISIKDRQKSQAIIIKNIDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++S + +I L + + LVVE+YSR Sbjct: 153 KVPNHLSFDSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|289576414|dbj|BAI77781.1| ribosomal protein small subunit 4 [Hymenophyllum imbricatum] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 24 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E+ + + R Sbjct: 83 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKESIEFSRRK 142 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 143 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 186 >gi|121761806|gb|ABM64989.1| ribosomal protein S4 [Plagiomnium arbuscula] Length = 185 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + ++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNDRLVNIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 143 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 183 >gi|77862507|gb|ABB04526.1| small ribosomal protein 4 [Asterella africana] Length = 201 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N SV+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNSVDIPSYNCKPKDII 136 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K +L + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLIQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|29422405|gb|AAO84598.1| small ribosomal protein 4 [Breutelia chrysocoma] Length = 200 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 198 >gi|66866233|gb|AAY57786.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 205 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + D Sbjct: 98 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNLD 157 Query: 164 ------VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 FYQKYKIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 203 >gi|157272419|gb|ABV27024.1| ribosomal protein small subunit 4-like protein [Azolla nilotica] Length = 173 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 98/170 (57%), Gaps = 12/170 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQK++ YG ++E++ + A +++G T + LE RLD I+Y Sbjct: 7 KISQFCVRLEAKQKLRYNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIYHL 65 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL-----ASVLEASQ 158 PTI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + L ++E+S+ Sbjct: 66 GMSPTIPAARQPVNHRHILVNDRIVDVPSYRCKSKDIITVRNRPTSLNGVKRTGIIESSR 125 Query: 159 LAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ +P+++ S++ DN V ++ + + + VVE+YSR Sbjct: 126 GSQ--IPDHLTFSLSEDNRPKGLVNKTATRESIDLNI--NELSVVEYYSR 171 >gi|108861098|gb|ABG21421.1| ribosomal protein small subunit 4 [Marsilea mutica] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 12 LTGKAPNPRESRVAA----DQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIAR 66 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 67 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 126 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 127 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 161 >gi|34147961|gb|AAQ62557.1| ribosomal protein S4 [Tetrastylis ovalis] Length = 180 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 4 KSPIVESAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 55 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 56 TGPVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 115 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 116 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLDPFQYKGLVNQII-------DSKW-VGLQIN 166 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 167 ELLVVEYYSR 176 >gi|14090446|gb|AAK53508.1| small ribosomal protein 4 [Calymperes tuamotuense] Length = 182 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + + Sbjct: 80 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKLQDFITIKDQQKYQTMIVKNTNFSPKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N V + L + + LVVE+YSR Sbjct: 140 KIPSHLMFNS---VEKKGVVNQLLDQESIGLKINELLVVEYYSR 180 >gi|63191726|gb|AAY34823.1| small ribosomal protein subunit 4 [Fleischerobryum longicolle] Length = 197 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|63191732|gb|AAY34826.1| small ribosomal protein subunit 4 [Braunia secunda] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLKKKGLVNQI---LDRELIGLKINELLVVEYYSR 196 >gi|307602223|gb|ADN67993.1| ribosomal protein S4 [Chamaecyparis formosensis] gi|307602229|gb|ADN67996.1| ribosomal protein S4 [Chamaecyparis pisifera] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K Sbjct: 83 GMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQ 126 >gi|140083433|gb|ABO84828.1| ribosomal protein S4 [Anacolia webbii] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 200 >gi|37992577|gb|AAR06467.1| small ribosomal protein 4 [Lepidopilum scabrisetum] Length = 194 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K K K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDSIVDIPSYRCKPQDFITIKNKKKSEAIISKNIEFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N V I L + + LVVE+YSR Sbjct: 152 KIPNYLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 192 >gi|12330474|gb|AAG52774.1| ribosomal protein 4 [Entosthodon drummondii] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L K K++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 22 QSTAKKISQYRIRLEEKXKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V I SYRCK D I VK + K A + + + Sbjct: 81 IVFRLGMAPTIPGARQLVNHRHVLVNXGIVXIPSYRCKPEDXITVKNRKKSQAIITKNTY 140 Query: 159 LAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 141 FSQKYKVPNHLTFDFTQKKGLVTQI---LDRESXGLKINELLVVEYYSR 186 >gi|12330532|gb|AAG52803.1| ribosomal protein 4 [Conostomum tetragonum] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|254553691|gb|ACT67304.1| ribosomal protein S4 [Joinvillea plicata] Length = 181 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 9/175 (5%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 GL Q K S + ++L KQK++ +YG ++E++ A +++ T L+ LE Sbjct: 11 GLKNQLHPGKKSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEM 69 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 RLD I++R TI ARQ VNHRH+LVNGR V+I S+RCK D+I K Q+SK+L Sbjct: 70 RLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDDQRSKRLIQ 129 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 AS A+ +P++++++ + + + + D + + + LVVE+YSR Sbjct: 130 NSIASS-AQVKLPKHLTID----TLQYKGLVNQIIDSKWIGLKINELLVVEYYSR 179 >gi|118626107|emb|CAL41756.1| small ribosomal protein 4 [Anastrophyllum donnianum] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVELKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|118626109|emb|CAL41757.1| small ribosomal protein 4 [Anastrophyllum alpinum] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVELKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|42718076|gb|AAS38460.1| rps4 [Tayloria subglabra] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNRQESQAIINKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|39546755|gb|AAR28104.1| small ribosomal protein 4 [Andreaea wilsonii] gi|63191769|gb|AAY34844.1| small ribosomal protein subunit 4 [Andreaea wilsonii] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RL+ I++R Sbjct: 30 KMSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLNNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A +++ +++ Sbjct: 89 GMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIDCSQKY 148 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ ++ + R LK + LVVE+YSR Sbjct: 149 KIPNHLIFNSLQKKGLINQIIDRESIGLK-------INELLVVEYYSR 189 >gi|37992475|gb|AAR06416.1| small ribosomal protein 4 [Cyathophorum bulbosum] Length = 199 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SY+CK D I +K + K A + + + ++ Sbjct: 97 GMFPTIPGARQLVNHRHILVNGSIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N+ +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNYLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|67035761|gb|AAY62811.1| small ribosomal protein subunit 4 [Sehnemobryum paraguense] Length = 201 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN R VNI SYRCK D I +K + K + + ++ Sbjct: 99 GMAPTISGARQLVNHRHIIVNNRIVNIPSYRCKPQDFITIKNRQKSQDIITKNINFNQKY 158 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 159 KIPNHLTYN 167 >gi|293634033|gb|ADE60396.1| ribosomal protein subunit 4 [Pogonatum cirratum] Length = 193 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 1 KIIRRLGALPGLTNKTPQLKSGY---INQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VN Sbjct: 57 LLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 IPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|150251467|ref|YP_001312200.1| ribosomal protein S4 [Cycas taitungensis] gi|172048625|sp|A6H5H5|RR4_CYCTA RecName: Full=30S ribosomal protein S4, chloroplastic gi|149941517|dbj|BAF64941.1| ribosomal protein S4 [Cycas taitungensis] Length = 201 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTNKRPKSRNDPTNQSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 78 STGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 + + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 138 IIDQRRSRAMIGKNLDLSQKDQMPNHLTLHSSQYKGLVNQIIDS-KWISLKI--NELLVV 194 Query: 202 EFYSR 206 E+YSR Sbjct: 195 EYYSR 199 >gi|3914858|sp|O20264|RR4_MORST RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292950|emb|CAA92556.1| ribosomal protein S4 [Moraea spathulata] Length = 194 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 7/170 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD Sbjct: 28 QLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEA 156 I++R TI ARQ V HRH+LVNGR ++I SYRCK D+I KQ+SK L A Sbjct: 87 ILFRLGMASTIPGARQLVTHRHILVNGRIMDIPSYRCKPRDIITTKDKQRSKALIQNYIA 146 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E ++P +++++ +I S K + + LVVE+YSR Sbjct: 147 SSPQE-ELPNHLTIDPIQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 192 >gi|157786004|gb|ABV74174.1| small ribosomal protein 4 [Lopidium struthiopteris] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 96 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 140 >gi|26399116|sp|P59148|RR4_LOPST RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504355|emb|CAC81022.1| small ribosomal protein 4 [Lopidium struthiopteris] Length = 203 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 101 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 145 >gi|289599939|gb|ADD12920.1| ribosomal protein S4 [Hibbertia dilatata] gi|289599941|gb|ADD12921.1| ribosomal protein S4 [Hibbertia juncea] Length = 167 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 23/178 (12%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEA 156 I++R TI ARQ VNH+H+LVN R V+I SYRCK D+I VK KS+ L Sbjct: 60 ILFRLGMASTIPGARQLVNHKHILVNDRIVDIPSYRCKPRDLITVKDEHKSRALIQNFLD 119 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI------MQPN--LVVEFYSR 206 S L E ++P+++++ P K + +I +Q N LVVE+YSR Sbjct: 120 SSLHE-ELPKHLTLQ-----------PFQYKGLVNQIIDSKWIGLQINELLVVEYYSR 165 >gi|21914176|gb|AAM81310.1| ribosomal protein subunit 4 [Epipterygium tozeri] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQNY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLTKKGLVXQI---LDRESIDLKINELLVVEYYSR 193 >gi|24473814|gb|AAL82750.1| small ribosomal subunit protein 4 [Imbribryum blandum] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ V+HRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 94 GMAPTIPGARQLVSHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 152 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 153 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 194 >gi|293633967|gb|ADE60363.1| ribosomal protein subunit 4 [Alophosia azorica] Length = 183 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIAKGAKGSTGQILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 P+I ARQ VNH+H+LVN VNI SYRCK D I +K + K A +L+ +++ Sbjct: 81 GMAPSIPGARQLVNHKHILVNDCIVNIPSYRCKPQDFITIKNRQKSQAIILKNMDFSQKY 140 Query: 163 DVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L D+ + LVVE+YSR Sbjct: 141 KIPNHLTFNSFEKKGLVNQILDRELIDLK----INELLVVEYYSR 181 >gi|254995577|emb|CAO82747.1| ribosomal protein S4 [Lycopodium fastigiatum] gi|254995583|emb|CAO82750.1| ribosomal protein S4 [Lycopodium volubile] Length = 172 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + + + A + + ++ ++ Sbjct: 70 GMAPTIPGARQLVNHKHILVNNRAINVPSYRCKPKDIITTRDRPESRAIIAKNNKFSQTY 129 Query: 163 DVPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + S + + LVVE+YSR Sbjct: 130 KIPNHLTLHSLQNKGLVNKIIDRES------IDLNINELLVVEYYSR 170 >gi|46811062|gb|AAT01849.1| small ribosomal protein 4 [Verdoornia succulenta] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 5/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD ++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAKGSTGQMLLQSLEMRLDNTIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQFVNH HV +NG VNI SY CK GD+I +K + K V + L + + Sbjct: 95 GMVATIPAARQFVNHGHVSINGSRVNIPSYNCKPGDIITMKNQEKS-RLVRNMNLLQKPE 153 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ ++ + + ++ + + LVVE+YSR Sbjct: 154 LPNHLTLDSVQLIGS---VNQMIERAWIDLKINELLVVEYYSR 193 >gi|16565389|gb|AAL26209.1|AF313609_1 small ribosomal protein 4 [Cycas revoluta] Length = 194 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 12 PGLTNKRPKSRNDPTNQSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKG 70 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 71 STGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 130 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 + + + A + + L+++D +P +++++ +I S K + + LVV Sbjct: 131 IIDQRRSRAMIGKNLDLSQKDQMPNHLTLHSSQYKGLVNQIIDS-KWISLKI--NELLVV 187 Query: 202 EFYSR 206 E+YSR Sbjct: 188 EYYSR 192 >gi|184128075|gb|ACC67937.1| ribosomal protein small subunit 4 [Equisetum ramosissimum subsp. debile] Length = 170 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 86/136 (63%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S +G++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 1 QSIQKKVSQYGIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV---KQKSKQLASVLE 155 I++R FVPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + K L+ LE Sbjct: 60 ILFRLGFVPTIPSARQLINHRHILVNNRIVDVPSFHCKPKDIITIGAPKTYQSILSKRLE 119 Query: 156 ASQLAERDVPEYISVN 171 + A+ +PE+++++ Sbjct: 120 S--FAKDQIPEHLTLS 133 >gi|63145906|gb|AAY33891.1| small ribosomal protein 4 [Jensenia wallisii] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 18/203 (8%) Query: 10 KIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G L G + +RS Y L + K S + ++L KQK++ +YG ++E+ Sbjct: 6 KIIRRLGA-LPGLSHKMLGSRSGYTNQLTANK---KISQYRIRLEEKQKLRFHYG-LTER 60 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+N V Sbjct: 61 QLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILINDDIV 120 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS--- 184 NI SY CK DVI +K + + + + + + L E+ +P +++ + + +I Sbjct: 121 NIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGSVNQIIDREW 180 Query: 185 -SLKDVPYPVIMQPNLVVEFYSR 206 SLK + LVVE+YSR Sbjct: 181 ISLK-------INELLVVEYYSR 196 >gi|42794641|gb|AAS45718.1| Rps4 [Ceratostema reginaldii] Length = 211 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++ + KQK++ +YG ++E++ + +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRPQEKQKLRFHYG-LTERQLLKYVRIXGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|3098258|gb|AAC15577.1| small ribosomal protein 4 [Pyrrhobryum spiniforme] gi|46486584|gb|AAS98728.1| ribosomal protein subunit 4 [Pyrrhobryum spiniforme] gi|47606938|gb|AAT36389.1| ribosomal protein subunit 4 [Pyrrhobryum pungens] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G K+P T S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 RIIRRLGALPGLTNKTPQLTSS---SINQSTSNRKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V+ Sbjct: 59 LLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVNDRIVD 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 119 IPSYRCKPQDFITIKDREKYQTIISKNIDFYQKYKIPNHLTYNFLEKKGVVNQI---LDR 175 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ESISLKINELLVVEYYSR 193 >gi|118625981|emb|CAL39312.1| small ribosomal protein 4 [Syzygiella setulosa] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY CK GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNGIVDIPSYNCKPGDAI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIRNKEKSQSIITQNTNLFQKVKIPSHLTFDSTQLRG-FVNQTINREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|11228637|gb|AAG33104.1| small ribosomal protein 4 [Dicranum scoparium] gi|20531107|gb|AAM27374.1| ribosomal protein 4 [Dicranum scoparium] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+ ++ + + A +++G T L+ LE RLD ++ R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-ITGRQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|66876464|gb|AAY58016.1| Rps4 [Cuscuta sandwichiana] Length = 197 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 15/208 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP R R + S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTNKSPRAIRDL--------RNNSRSEYRIRLEEKQKLRF 52 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + + A +++G T L+ LE RLD I++R T AARQ VNHRH Sbjct: 53 HYG-LTEKQLINYVQIARKAKGSTGKVLLQLLEMRLDNILFRLGMASTXXAARQLVNHRH 111 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-F 179 VLVNGR VN SYRCK D+I K +K + VL + L E NH N+ +T + Sbjct: 112 VLVNGRLVNRPSYRCKPHDIIMPKNTTK--SGVLVQNSLELFTGKEL--ANHLNLFSTPY 167 Query: 180 VRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + + D + + + LVVE+YSR Sbjct: 168 KGLVNKIVDTNWIGLKINELLVVEYYSR 195 >gi|3098182|gb|AAC15539.1| small ribosomal protein 4 [Mielichhoferia bryoides] gi|63191712|gb|AAY34816.1| small ribosomal protein subunit 4 [Mielichhoferia bryoides] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNNRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 196 >gi|78103255|ref|YP_358580.1| ribosomal protein S4 [Phalaenopsis aphrodite subsp. formosana] gi|90101665|sp|Q3BAN8|RR4_PHAAO RecName: Full=30S ribosomal protein S4, chloroplastic gi|58802785|gb|AAW82505.1| ribosomal protein S4 [Phalaenopsis aphrodite subsp. formosana] Length = 201 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE R Sbjct: 32 LQTQLRFGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K + A + Sbjct: 91 LDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPLDIITTKDKERSKALIQN 150 Query: 156 ASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R ++P +++++ +I S K + + LVVE+YSR Sbjct: 151 YLVSSPRGELPNHLTIDSLQYKGFVNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|162415130|gb|ABX89139.1| ribosomal protein S4 [Barbula unguiculata] Length = 187 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVDFFQKS 144 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 185 >gi|190361225|gb|ACE76917.1| ribosomal protein small subunit 4 [Trichomanes alatum] Length = 166 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 16/165 (9%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG E++ + A +++G T L+ LE RLD IV+R Sbjct: 14 KVSQFGIRLEAKQRLRFNYGS-RERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRHVLVN V+I SYRCK+ D+I ++ + E+S+ + Sbjct: 73 GMAPTIPAARQLVNHRHVLVNDHIVDIPSYRCKDKDLITLRNQ--------ESSR---KR 121 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + N + V ++ + + + LVVE+YSR Sbjct: 122 IPDHLKFSSSEGNNLKGLVNGIANRESIDLNI--NELLVVEYYSR 164 >gi|118626019|emb|CAL39327.1| small ribosomal protein 4 [Cryptochila paludosa] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNGIVDIPSYNCEPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIKNKQKSQSIITKNTNLFQKVKIPSHLTFDSTQLRG-FVNQTVNREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|83416508|gb|ABC18274.1| small ribosomal subunit protein 4 [Breutelia chrysocoma] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|37683552|gb|AAQ98827.1| small ribosomal protein 4 [Pogonatum fastigiatum] Length = 190 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFIAIKNRQESQAIIAKNINFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|12330484|gb|AAG52779.1| ribosomal protein 4 [Tetraplodon lamii] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I K + K A + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITTKDRQKSQAIISKNIXFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|63101087|gb|AAY33168.1| small ribosomal protein 4 [Lopidium concinnum] Length = 186 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 84 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 128 >gi|328488182|gb|AEB19904.1| small ribosomal protein 4 [Schistochila blumei] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ YYG ++E++ + A +++ Sbjct: 8 PGLTNKILKPKSSYIDRSTANKKFSQYRIRLEEKQKLRFYYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQILLQLLEMRLDNIIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K QL + L + +P +++ + + + + + + LV Sbjct: 127 AIRNKQKSQLIITRNLNLLQKLKIPNHLTFDSTQLQGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|293634029|gb|ADE60394.1| ribosomal protein subunit 4 [Pogonatum campylocarpon] gi|293634043|gb|ADE60401.1| ribosomal protein subunit 4 [Pogonatum microstomum] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 93 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 193 >gi|157785997|gb|ABV74171.1| small ribosomal protein 4 [Lopidium concinnum] gi|157786000|gb|ABV74172.1| small ribosomal protein 4 [Lopidium concinnum] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 96 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 140 >gi|37960581|gb|AAP70660.1| small ribosomal protein 4 [Flatbergium sericeum] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTNKTPQSKSGYINQSISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPRDFI 130 Query: 142 EVKQKSK 148 +K + K Sbjct: 131 TIKDRQK 137 >gi|37960605|gb|AAP70672.1| small ribosomal protein 4 [Flatbergium sericeum] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y + ++L KQK++ +YG I+E++ + A R++ Sbjct: 12 PGLTNKTPQSKSGYINQSISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPRDFI 130 Query: 142 EVKQKSK 148 +K + K Sbjct: 131 TIKDRQK 137 >gi|37683548|gb|AAQ98825.1| small ribosomal protein 4 [Pogonatum macrophyllum] Length = 190 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + +A +++ SQ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQVIIAKIIDFSQ-- 145 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ N +I L + + LVVE+YSR Sbjct: 146 KYKIPNHLTFNSFEKKGLVNKI---LDRESIGLKINELLVVEYYSR 188 >gi|12330524|gb|AAG52799.1| ribosomal protein 4 [Barbula unguiculata] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRQKSQVMITKNVDFFQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|25986665|gb|AAN52769.1| ribosomal protein small subunit 4 [Gymnogrammitis dareiformis] Length = 181 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 17 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + ++ ++ D Sbjct: 76 GLASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNALTLRNKFTGGD 135 Query: 164 -VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN V ++ + V + +VVE+YSR Sbjct: 136 KTPDHLTISLSEDNKPTGLVNCVANRESVNLNI--NELVVVEYYSR 179 >gi|7576651|gb|AAF63938.1| ribosomal protein system 4 [Breutelia scoparia] Length = 190 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 89 GIAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|63191722|gb|AAY34821.1| small ribosomal protein subunit 4 [Anacolia webbii] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|118626139|emb|CAL39367.1| small ribosomal protein 4 [Tritomaria quinquedentata subsp. quinquedentata] gi|118626151|emb|CAL39373.1| small ribosomal protein 4 [Tritomaria quinquedentata subsp. turgida] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|223931073|ref|YP_002586934.1| ribosomal protein S4 [Syntrichia ruralis] gi|219562287|gb|ACL27618.1| ribosomal protein S4 [Syntrichia ruralis] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 200 >gi|37683578|gb|AAQ98840.1| small ribosomal protein 4 [Pogonatum usambaricum] Length = 180 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 78 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFIIIKNRQKSQAIIAKNIDFSQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 178 >gi|254995531|emb|CAO82723.1| ribosomal protein S4 [Diphasiastrum complanatum] Length = 152 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 94/159 (59%), Gaps = 17/159 (10%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ Sbjct: 2 KQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQ 60 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYI---SV 170 VNH+H+LVN R++N+ SYRCK D+I + +S+ A + + ++ ++ +P ++ S+ Sbjct: 61 LVNHKHILVNNRAINVPSYRCKPKDIITARDRSESQAIIAKNNEFSQTYKIPNHLTLHSL 120 Query: 171 NHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +V + I S++ ++ LVVE+YSR Sbjct: 121 QNKGLVNKIIDRESIDSNINEL---------LVVEYYSR 150 >gi|157786002|gb|ABV74173.1| small ribosomal protein 4 [Lopidium concinnum] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 96 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 140 >gi|37992587|gb|AAR06472.1| small ribosomal protein 4 [Lopidium concinnum] gi|37992589|gb|AAR06473.1| small ribosomal protein 4 [Lopidium concinnum] gi|37992591|gb|AAR06474.1| small ribosomal protein 4 [Lopidium plumarium] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 93 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 137 >gi|28194677|gb|AAO33600.1|AF480955_1 ribosomal protein S4 [Gymnostomiella monodii] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHKHILVNNRIINIPSYRCKPQDFITIKDRQKSQVLITKNIDFFQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 194 >gi|47606892|gb|AAT36366.1| ribosomal protein subunit 4 [Cyathophorum bulbosum] Length = 194 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SY+CK D I +K + K A + + + ++ Sbjct: 92 GMFPTIPGARQLVNHRHILVNGSIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N+ +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNYLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|90970058|gb|ABE02798.1| ribosomal protein S4 [Passiflora deidamioides] Length = 183 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 11/170 (6%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGPVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P+++++ H V + + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTL-HPFQYKGLV---NQIIDSKW-VGLQINELLVVEYYSR 181 >gi|140083429|gb|ABO84826.1| ribosomal protein S4 [Philonotis fontana] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN 171 +LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYN 168 >gi|118625943|emb|CAL39293.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118625945|emb|CAL39294.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625951|emb|CAL39297.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625953|emb|CAL39298.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118625955|emb|CAL39299.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625977|emb|CAL39310.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118625979|emb|CAL39311.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625983|emb|CAL39313.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118626001|emb|CAL41738.1| small ribosomal protein 4 [Anastrophyllum tubulosum] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|42556398|gb|AAS19794.1| small ribosomal protein 4 [Blasia pusilla] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG I+E++ + A +++ Sbjct: 8 PGLTNKILKSKSGYLNPSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK D+I Sbjct: 67 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNINVDIPSYNCKPKDII 126 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNL 199 +K + K + + + + + +P +++ + + F + + + D + + + L Sbjct: 127 TIKNRQKSQSIITKNLNSFQKSKIPNHLTFD----LIQFKGLVNQIIDREWINLKINELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|42556514|gb|AAS19852.1| small ribosomal protein 4 [Tritomaria quinquedentata] Length = 190 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 PGLTNKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 65 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 66 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 125 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 126 TIRNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 182 Query: 201 VEFYSR 206 VE+YSR Sbjct: 183 VEYYSR 188 >gi|17154622|emb|CAC83923.1| ribosomal protein S4 [Herbertia pulchella] Length = 181 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 2/142 (1%) Query: 31 SYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLIS 90 + G L Q R K S ++L +QK++ +YG ++E++ A +++G T L+ Sbjct: 19 TSGRDLKNQLRSGKRSQXRIRLEEQQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQVLLQ 77 Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K + Sbjct: 78 ILEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSK 137 Query: 151 ASVLEASQLA-ERDVPEYISVN 171 A + L+ + ++P +++++ Sbjct: 138 ALIQNYIDLSPQEELPNHLTMD 159 >gi|20531090|gb|AAM27366.1| ribosomal protein 4 [Diphyscium longifolium] Length = 192 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQK 134 >gi|63191849|gb|AAY34884.1| small ribosomal protein subunit 4 [Reimersia inconspicua] Length = 199 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|63191734|gb|AAY34827.1| small ribosomal protein subunit 4 [Hedwigidium integrifolium] Length = 199 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLKKKGLVNQI---LDRELIGLKINELLVVEYYSR 197 >gi|42556408|gb|AAS19799.1| small ribosomal protein 4 [Chandonanthus sp. He-Nygren 492] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDTVDIPSYSCESGDII 126 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQKSKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|37683576|gb|AAQ98839.1| small ribosomal protein 4 [Pogonatum belangeri] Length = 179 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 18 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 77 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFIIIKNRQKSQAIIAKNIDFSQKY 136 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 137 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 177 >gi|15145846|gb|AAK83541.1| rps4 [Tayloria squarrosa] gi|42718074|gb|AAS38459.1| rps4 [Tayloria longiseta] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQESQAIINKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|58293905|gb|AAW69899.1| small ribosomal protein 4 [Sehnemobryum paraguense] Length = 189 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH++VN R VNI SYRCK D I +K + K Sbjct: 87 GMAPTISGARQLVNHRHIIVNNRIVNIPSYRCKPQDFITIKNRQK 131 >gi|27227945|gb|AAN85770.1| ribosomal protein subunit 4 [Bryum coronatum] Length = 198 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ V+HRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 96 GMAPTIPGARQLVSHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIINKNLNLYQK- 154 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 155 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 196 >gi|270300653|gb|ACZ69405.1| ribosomal protein S4 [Radula grandis] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 36/221 (16%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G Y PGL + K K SY + Sbjct: 1 MSRYRGPRVKIIRRLG---------------YLPGLSNKTLKPKSSYIDRSISNKKISQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++EK+ + A +G T LI LE RLD ++ PT Sbjct: 46 RIRLEEKQKLRFHYG-LTEKQLLKYVRIARNMKGSTGQVLIQLLEMRLDNTIFCLGMTPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEY 167 I ARQ VNH+H+++N +VNI SY C+ GD+I ++ + K +L + + + ++P Sbjct: 105 IPGARQLVNHKHIVINNHTVNIPSYNCELGDIITIRNRHKSKLIITRNINSVQKLEIP-- 162 Query: 168 ISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 NH AT +R I + + + LVVE+YSR Sbjct: 163 ---NHLTFDATQLRGLINQRIDCNSISLKINELLVVEYYSR 200 >gi|293611980|gb|ADE48434.1| ribosomal protein 4 [Cycas wadei] Length = 181 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 20 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQILLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK DVI ++ + + A + + L+++D Sbjct: 79 GMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITIRDQRRSRAMIGKNLDLSQKD 138 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 139 QMPNHLTLHSSQYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 179 >gi|118626105|emb|CAL39354.1| small ribosomal protein 4 [Barbilophozia floerkei] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRSKQKSQSIVTRNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|3098196|gb|AAC15546.1| small ribosomal protein 4 [Philonotis fontana] gi|29422373|gb|AAO84582.1| small ribosomal protein 4 [Philonotis fontana] Length = 187 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|219973390|gb|ACL68581.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973392|gb|ACL68582.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973394|gb|ACL68583.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973396|gb|ACL68584.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973398|gb|ACL68585.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973400|gb|ACL68586.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973402|gb|ACL68587.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973404|gb|ACL68588.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973406|gb|ACL68589.1| ribosomal protein small subunit 4 [Marsilea mutica] gi|219973506|gb|ACL68639.1| ribosomal protein small subunit 4 [Marsilea mutica] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|118626023|emb|CAL39328.1| small ribosomal protein 4 [Tetralophozia setiformis] Length = 191 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|49182742|gb|AAT57833.1| small ribosomal protein [Lepicolea rara] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K+K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKTKSSYIDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 131 TIRNKEKSQSIITKNINLFQNLKIPSHLTFDSTKLCGS---ITQTINREWITLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|293611972|gb|ADE48430.1| ribosomal protein 4 [Cycas micronesica] Length = 182 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK DVI ++ + + A + + L+++D Sbjct: 80 GMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITIRDQRRSRAMIGKNLDLSQKD 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++ H + V K + + LVVE+YSR Sbjct: 140 QMPNHLTL-HSSQYKGLVNQIIDRKWISLKI--NELLVVEYYSR 180 >gi|162415116|gb|ABX89132.1| ribosomal protein S4 [Aloina cornifolia] Length = 188 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKSQDFITINDRKKSQVMITKNVDFFQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 186 >gi|118626007|emb|CAL39321.1| small ribosomal protein 4 [Leiomylia anomala] Length = 202 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKMLKSKSSYVDRSISNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P ++S + + + + P + + V + LV Sbjct: 138 TIRNKQKSQSIITKNINLFQNLKIPSHLSFDSTKLCGS-INQPINRESVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|47606912|gb|AAT36376.1| ribosomal protein subunit 4 [Lopidium concinnum] Length = 200 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 98 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 142 >gi|159106866|ref|YP_001531285.1| ribosomal protein S4 [Lolium perenne] gi|166897630|sp|P69646|RR4_LOLPR RecName: Full=30S ribosomal protein S4, chloroplastic gi|158934400|emb|CAO85978.1| ribosomal protein S4 [Lolium perenne] Length = 201 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 112/210 (53%), Gaps = 15/210 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR VNI S+RCK D+I K Q+SK L L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQTLMASSDPGK-LPKHLTID----TLE 170 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 171 YKGLVNKILDRKW-VGLKINELLVVEYYSR 199 >gi|49182817|gb|AAT57870.1| small ribosomal protein [Tritomaria quinquedentata] Length = 195 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTNKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TIRNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37683554|gb|AAQ98828.1| small ribosomal protein 4 [Pogonatum nudiusculum] Length = 190 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 88 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|28194675|gb|AAO33599.1|AF480954_1 ribosomal protein S4 [Desmatodon latifolius] Length = 196 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINNRKKSQVMINKNIDFYQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQELIGLKINELLVVEYYSR 194 >gi|293634037|gb|ADE60398.1| ribosomal protein subunit 4 [Pogonatum dentatum] Length = 192 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + + KP Y ++L KQK++ +YG I+E++ + + A R++ Sbjct: 9 PGLTNKTPQLKPGYMNQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI SYRCK D I Sbjct: 68 GSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFI 127 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + + + + +++ +P +++ N +I L + + LV Sbjct: 128 TIKDRQESQVIIDKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLV 184 Query: 201 VEFYSR 206 VE+YSR Sbjct: 185 VEYYSR 190 >gi|190361253|gb|ACE76931.1| ribosomal protein small subunit 4 [Trichomanes lucens] Length = 161 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG E++ + A +++G T L+ LE RLD IV+R Sbjct: 15 KVSQFGIRLEAKQRLRFNYGS-RERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHRHVLVN V+I SYRCK+ D+I ++ + Sbjct: 74 GMAPTIPAARQLVNHRHVLVNNHIVDIPSYRCKDKDLITLRSQ 116 >gi|157689500|gb|ABV65306.1| ribosomal protein S4 [Irvingia malayana] Length = 182 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 10 GSDLRNQYRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLL 68 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + + K A Sbjct: 69 EMRLDNILFRLGMSSTIPRARQLVNHRHILVNGCIVDIPSYRCKPRDIITARDEQKSRAM 128 Query: 153 V---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S + ++P+++++ +I S K V + LVVE+YSR Sbjct: 129 IQNYLDSS--PQEELPKHLTLYPFQYKGLVTQIIDS-KWVGLKI--NELLVVEYYSR 180 >gi|118627508|emb|CAL39388.1| small ribosomal protein 4 [Lophozia ventricosa var. ventricosa] Length = 202 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCETGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63145910|gb|AAY33893.1| small ribosomal protein 4 [Jensenia difformis] Length = 202 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 18/203 (8%) Query: 10 KIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G L G + +RS Y L + K S + ++L KQK++ +YG ++E+ Sbjct: 10 KIIRRLGA-LPGLSHKMLGSRSGYTNQLTANK---KISQYRIRLEEKQKLRFHYG-LTER 64 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+N V Sbjct: 65 QLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILINDDIV 124 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS--- 184 NI SY CK DVI +K + + + + + + L E+ +P +++ + + +I Sbjct: 125 NIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGSVNQIIDREW 184 Query: 185 -SLKDVPYPVIMQPNLVVEFYSR 206 SLK + LVVE+YSR Sbjct: 185 ISLK-------INELLVVEYYSR 200 >gi|293611978|gb|ADE48433.1| ribosomal protein 4 [Cycas simplicipinna] Length = 182 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK DVI ++ + + A + + L+++D Sbjct: 80 GMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITIRDQRRSRAMIGKNLDLSQKD 139 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 140 QMPNHLTLHSSQYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 180 >gi|118627532|emb|CAL39399.1| small ribosomal protein 4 [Lophozia ventricosa var. confusa] Length = 202 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLXINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|71679580|gb|AAZ38858.1| ribosomal protein small subunit 4 [Hymenophyllum mnioides] Length = 207 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+ ++L G +N R Q K S F ++L AKQ+++ YG +E Sbjct: 9 RFKIIRRL-KDLPGLTNKKLNVREARIATD-QSSSRKVSQFCVRLEAKQRLRFNYGS-TE 65 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD IV+++ TI AARQ VNHRH+LVN Sbjct: 66 RQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQSGMSATIPAARQLVNHRHILVNNHI 125 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYI--SVNHDNMVATFVRIPS 184 V+I SYRCK D+I V+ + + E + R +P+++ S + DNM V + Sbjct: 126 VDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRKKIPDHLTFSFSEDNMPKGLVNGIA 185 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 186 NRESIDLNI--NELLVVEYYSR 205 >gi|82799233|gb|ABB92160.1| 30S ribosomal protein S4 [uncultured marine type-A Synechococcus 4O4] Length = 147 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 9/148 (6%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH HV Sbjct: 4 YG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGHV 62 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVAT 178 VNGR +I SY+CK GDV+ ++++ SKQLA LE LA +VP ++ ++ + A Sbjct: 63 TVNGRVTDIASYQCKPGDVVAIRERKCSKQLAEGNLEFPGLA--NVPTHLELDKAKLSA- 119 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 120 --KVTGRCEREWVALEINELLVVEYYSR 145 >gi|162415076|gb|ABX89112.1| ribosomal protein S4 [Syntrichia princeps] Length = 202 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 200 >gi|157689406|gb|ABV65259.1| ribosomal protein S4 [Ailanthus altissima] Length = 186 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + K A Sbjct: 73 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDDHKSRAL 132 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S E +P++++++ Sbjct: 133 IQNYLDSSHHEE--LPKHLTLH 152 >gi|118626033|emb|CAL41743.1| small ribosomal protein 4 [Barbilophozia attenuata] Length = 191 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ FLE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQFLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRSKQKSQSIVTKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 V +YSR Sbjct: 184 VXYYSR 189 >gi|26399114|sp|P59147|RR4_LOPCO RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504357|emb|CAC81027.1| small ribosomal protein 4 [Lopidium concinnum] Length = 203 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K K K Sbjct: 101 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNKQK 145 >gi|197294102|ref|YP_002149723.1| ribosomal protein S4 [Cicer arietinum] gi|197089790|gb|ACH41060.1| ribosomal protein S4 [Cicer arietinum] Length = 201 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 25/215 (11%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G+ K P + G L Q SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGDLPGLTSKRP----TVGSELRNQSSSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SYRCK D+I K K + + + + + R ++P +++++ Sbjct: 116 VFVNGRIVDIPSYRCKPQDIITAKDDQKSITLIQNSLESSPREELPNHLTLH-------- 167 Query: 180 VRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 PS K + +I + LVVE+YSR Sbjct: 168 ---PSEYKGLVNQIIDSKWVGLKINELLVVEYYSR 199 >gi|28194729|gb|AAO33626.1|AF480981_1 ribosomal protein S4 [Syntrichia ruralis] gi|28194829|gb|AAO33676.1|AF481031_1 ribosomal protein S4 [Syntrichia intermedia] gi|33413245|emb|CAD86757.1| ribosomal protein small subunit 4 [Syntrichia ruralis] Length = 196 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|328488186|gb|AEB19906.1| small ribosomal protein 4 [Schistochila doriae] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ YYG ++E++ + A +++ Sbjct: 8 PGLTNKILKPKSSYIDRSTANKKLSQYRIRLEEKQKLRFYYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQILLQLLEMRLDNIIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K QL + L + +P +++ + + + + + + LV Sbjct: 127 AIRNKQKSQLIITRNLNLLQKLKIPNHLTFDSTQLQGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|121761847|gb|ABM65009.1| ribosomal protein S4 [Plagiomnium integrum] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRSDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 149 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 189 >gi|116010489|emb|CAL37351.1| ribosomal protein S4 [Gentiana cruciata] Length = 194 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 22 GTDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVN V+I SYRCK D+I K QKS+ L Sbjct: 81 EMRLDNILFRLGMASTIPAARQLVNHRHILVNSHIVDIPSYRCKPRDIITAKTEQKSRGL 140 Query: 151 AS-VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S ++P +++++ +I S K V + LVVE+YSR Sbjct: 141 IQKSLDSS--PHEELPSHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 192 >gi|14090422|gb|AAK53496.1| small ribosomal protein 4 [Mitthyridium constrictum] Length = 182 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKSQDFITIKDQQKYQTMIVKNTKFS--- 136 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 137 -PKHKTPNHLTFNSVEKKGLVNQILNQESIGLKINELLVVEYYSR 180 >gi|78369625|gb|ABB43042.1| ribosomal protein 4 [Calymperes schmidtii] Length = 199 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK + I +K + K +++ + + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQEFITIKNQQKYQTMIIKNENFSPKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|293634047|gb|ADE60403.1| ribosomal protein subunit 4 [Pogonatum nipponicum] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|49182679|gb|AAT57802.1| small ribosomal protein [Blasia pusilla] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG I+E++ + A +++ Sbjct: 12 PGLTNKILKSKSGYLNPSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNINVDIPSYNCKPKDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNL 199 +K + K + + + + + +P +++ + + F + + + D + + + L Sbjct: 131 TIKNRQKSQSIITKNLNSFQKSKIPNHLTFD----LIQFKGLVNQIIDREWINLKINELL 186 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 187 VVEYYSR 193 >gi|42405306|gb|AAS13479.1| rps4 small ribosomal protein [Thamniopsis incurva] Length = 194 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTISAARQLVNHRHIVVNNYIVDIPSYRCKPQDFITIKNQPKSEAIITKNIEFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N + I L + + LVVE+YSR Sbjct: 152 KIPNHLT---SNFLEKKGLINQILDRESIGLKINELLVVEYYSR 192 >gi|118626077|emb|CAL39342.1| small ribosomal protein 4 [Plicanthus hirtellus] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDTVDIPSYSCESGDII 137 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNINLFQKSKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|28194731|gb|AAO33627.1|AF480982_1 ribosomal protein S4 [Syntrichia leucostega] Length = 196 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|46947049|gb|AAT06757.1| ribosomal protein subunit 4 [Dendro-hypnum subspininervium] Length = 200 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 8 KIIRRLGA-LLGLTNKTAQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 63 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 64 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNDRIVD 123 Query: 130 IGSYRCKEGDVIEVKQKSKQLASV 153 I SYRCK D I +K + K A + Sbjct: 124 IPSYRCKPQDFITIKDRQKSQAII 147 >gi|46486578|gb|AAS98725.1| ribosomal protein subunit 4 [Mniodendron dendroides] Length = 199 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKNRQKSQAIISKNLDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ ++ +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYSYLEKKGFVTQI---LDRESIGLKINELLVVEYYSR 197 >gi|51860463|gb|AAU11368.1| ribosomal protein small subunit 4 [Gnetum gnemonoides] Length = 198 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + Q L+ KQK++ ++G ++E++ R + A + +G T L+ LE R Sbjct: 27 RRSSRPWWKKSQHLACLQEKQKIRFHFG-LTERQLRQYVQIAKKVQGSTGQVLLQLLEMR 85 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVL 154 LD I+Y+ TI ARQ VNHRH+LVN VNI SYRCK DVI +K K+ QL +++ Sbjct: 86 LDNILYQLGLAGTIPGARQLVNHRHILVNDYVVNIPSYRCKPQDVITIKGKNPDQLKTII 145 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 146 TRNRNKARENKIPYHLTLDFSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 196 >gi|290467481|gb|ADD25858.1| small ribosomal protein 4 [Hymenophyllum rarum] Length = 187 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 141 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DNM V ++ + + + LVVE+YSR Sbjct: 142 KIPDHLTFSFSEDNMPKGLVNGIANRESIDLNI--NELLVVEYYSR 185 >gi|118626025|emb|CAL39329.1| small ribosomal protein 4 [Anastrophyllum minutum var. minutum] gi|118626049|emb|CAL39333.1| small ribosomal protein 4 [Anastrophyllum minutum] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTNKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|118626135|emb|CAL39365.1| small ribosomal protein 4 [Barbilophozia lycopodioides] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVA----TFVRIPSSLKDVPYPVIMQ 196 +K K K + V + L ++ +P +++ + T R +LK + Sbjct: 138 TIKSKQKSQSIVTQNINLFQKLKIPSHLTFELAQLRGYVNQTVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|77862555|gb|ABB04550.1| small ribosomal protein 4 [Riccia ciliifera] Length = 201 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ A +++ Sbjct: 18 PGLTNKTFKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYIHIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N + V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNKIVDIPSYNCKPKDVI 136 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K QL + ++ +P +++ + + ++ ++ Y I + LV Sbjct: 137 TIKDRQKSQLIITKNLNFFQKQKIPNHLTFDLIQLKGLINQVVD--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|32344858|gb|AAM82188.1| ribosomal protein S4 [Erythrophyllopsis boliviana] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDGKKSQVMITKNVGFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|7576769|gb|AAF63981.1| small ribosomal protein 4 [Pogonatum contortum] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIITKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRDSIGLKINELLVVEYYSR 189 >gi|11228645|gb|AAG33108.1| small ribosomal protein 4 [Fissidens dubius] Length = 186 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLPEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 84 GMTPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDQQKYQVMIIKNVNFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVKQI---LDQESIGLKINELLVVEYYSR 184 >gi|63191791|gb|AAY34855.1| small ribosomal protein subunit 4 [Tetrodontium brownianum] Length = 194 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 10 KIDRRIGENLWGRPKSPVNTRSY-GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K+ RR+G K+P + Y P + + K S + ++L KQK++ +YG I+E+ Sbjct: 2 KVIRRLGVLPGLTIKTPQSKSGYINPSVSNK----KISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R TI ARQ VNHRH+LVN V Sbjct: 57 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMALTIPGARQLVNHRHILVNNHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 NI SYRCK D I +K + K +A ++ SQ + VP ++++N I Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQNIIAKNIDFSQ--KYKVPNHLTLNSSQKKGL---INQV 171 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 172 LDRESIGLKINELLVVEYYSR 192 >gi|289599953|gb|ADD12927.1| ribosomal protein S4 [Tetracera nordtiana] Length = 167 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 98/171 (57%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L+ Sbjct: 60 ILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLD 119 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 SS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 165 >gi|289599919|gb|ADD12910.1| ribosomal protein S4 [Hibbertia fasciculata] Length = 163 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS-- 117 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P+Y++++ +I S K V + LVVE+YSR Sbjct: 118 SHEELPKYLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 161 >gi|222103554|gb|ACM44306.1| small ribosomal protein subunit 4 [Marsupella commutata] Length = 198 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 15 PGLTNKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 74 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 133 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 134 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 190 Query: 201 VEFYSR 206 VE+YSR Sbjct: 191 VEYYSR 196 >gi|118626123|emb|CAL41758.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626127|emb|CAL39361.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626129|emb|CAL39362.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626131|emb|CAL39363.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626133|emb|CAL39364.1| small ribosomal protein 4 [Anastrophyllum minutum var. weberi] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|190361243|gb|ACE76926.1| ribosomal protein small subunit 4 [Trichomanes elegans] Length = 153 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+R Sbjct: 1 KVSQFGVRLEAKQRLRFNYGS-TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHRHVLVN V+I SYRCK D+I ++ + Sbjct: 60 GMAPTIPAARQLVNHRHVLVNNHMVDIPSYRCKHKDLITLRSQ 102 >gi|118625969|emb|CAL39306.1| small ribosomal protein 4 [Syzygiella rubricaulis] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY CK GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNGIVDIPSYNCKPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIRNKEKSQSIITQNTNLLQKVKIPSHLTFDLTQLRG-FVNQMINREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63191819|gb|AAY34869.1| small ribosomal protein subunit 4 [Dolotortula mniifolia] Length = 190 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K Q+ + Sbjct: 88 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQIMITKNLDFFQKS 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLIFNSLEKKGLINQI---LDQESIDLKINELLVVEYYSR 188 >gi|46810994|gb|AAT01815.1| small ribosomal protein 4 [Blasia pusilla] Length = 197 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG I+E++ + A +++ Sbjct: 14 PGLTNKILKSKSGYLNPSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK D+I Sbjct: 73 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNINVDIPSYNCKPKDII 132 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + + +P +++ + + F + + + D + + ++ N Sbjct: 133 TIKNRQKSQSIITKNLNSFQKSKIPNHLTFD----LIQFKGLVNQIIDREW-INLKINEL 187 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 188 LVVEYYSR 195 >gi|307069670|ref|YP_003878147.1| 30S ribosomal subunit protein S4 [Candidatus Zinderia insecticola CARI] gi|306482930|gb|ADM89801.1| 30S ribosomal subunit protein S4 [Candidatus Zinderia insecticola CARI] Length = 208 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + LQL KQK+K YG I EK+FR+ F + R RG+T+ N I LESRLD IVYR F Sbjct: 51 SNYKLQLFEKQKIKYIYG-ILEKQFRNYFNLSIRKRGNTAENFIKLLESRLDNIVYRMGF 109 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 T ARQ V+H+ + VN VNI SY KE D++ ++ K K ++ +L ++ Sbjct: 110 TNTRSEARQIVSHKFIKVNNIIVNIPSYLLKENDIVTLRNKFKNKNNIKNYLKLFKKIGF 169 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +I VN ++R P ++KD+ + + V+EF+S+ Sbjct: 170 PNWIKVNIKKFEGIYLRKP-NIKDINEKINIFS--VIEFFSK 208 >gi|293634055|gb|ADE60407.1| ribosomal protein subunit 4 [Pogonatum subulatum] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A +++ +++ Sbjct: 89 GMTPTIPGARQLVNHKHILVNDHIVNIPSYRCKPKDFIIIKNQQESQAIIVKNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|222103506|gb|ACM44282.1| small ribosomal protein subunit 4 [Marsupella commutata] Length = 199 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTNKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDISSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 135 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|28194841|gb|AAO33682.1|AF481037_1 ribosomal protein S4 [Syntrichia rigescens] Length = 196 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|219973432|gb|ACL68602.1| ribosomal protein small subunit 4 [Marsilea polycarpa] gi|219973434|gb|ACL68603.1| ribosomal protein small subunit 4 [Marsilea polycarpa] Length = 188 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|32344860|gb|AAM82189.1| ribosomal protein S4 [Erythrophyllopsis fuscula] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + K + + +++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDHKKSQVMITKNVGFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|59803301|gb|AAX07759.1| Rps4 [Jubula hutchinsiae subsp. javanica] Length = 172 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 9/170 (5%) Query: 5 ESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 E + KI RR+G L GR P +T + K S + ++L KQK++ +Y Sbjct: 5 EGPRVKIIRRLGSXPGLTGRASKPKSTY-----IDRSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD ++ PTI +ARQ VNHRH+ Sbjct: 60 G-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFCLGMAPTIPSARQLVNHRHIF 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVN 171 +N +VN+ SY C+ GD+I +K K K QL + + ++P ++ N Sbjct: 119 INNYTVNVPSYNCEPGDIITIKNKXKSQLIXTKNINSXQKLEIPNHLIFN 168 >gi|289599909|gb|ADD12905.1| ribosomal protein S4 [Hibbertia dentata] Length = 164 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 2 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 60 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 61 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS-- 118 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P+Y++++ +I S K V + LVVE+YSR Sbjct: 119 SHEELPKYLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 162 >gi|28194683|gb|AAO33603.1|AF480958_1 ribosomal protein S4 [Syntrichia caninervis] Length = 196 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|42794656|gb|AAS45725.1| Rps4 [Disterigma trimerum] Length = 211 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 11/168 (6%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 44 SQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGM 102 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQ 158 TI ARQ V HRHVLVNGR ++I SYRCK D+I ++KS+ L L + + Sbjct: 103 ASTIPGARQLVXHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRK 162 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 163 QKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|67035752|gb|AAY62807.1| small ribosomal protein subunit 4 [Zygodon bartramioides] Length = 194 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D+I +K + K + + + ++ Sbjct: 92 NMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPQDLITIKNRQKSQDIITKNIEFYQKY 151 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 152 KIPNHLTYN 160 >gi|307602323|gb|ADN68043.1| ribosomal protein S4 [Juniperus indica] gi|307602379|gb|ADN68071.1| ribosomal protein S4 [Juniperus squamata] Length = 189 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K ++ Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNRMKK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDQMRVPPHLNRIKQKSQYSGLVKKRIDNKRIGLKI--NELLVVEYYSR 187 >gi|293634053|gb|ADE60406.1| ribosomal protein subunit 4 [Pogonatum subulatum] Length = 187 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A +++ +++ Sbjct: 85 GMTPTIPGARQLVNHKHILVNDHIVNIPSYRCKPKDFIIIKNQQESQAIIVKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|18027970|gb|AAL55909.1| ribosomal protein S4 [Eriosorus flexuosus] Length = 190 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 3 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 61 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 62 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 121 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 122 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 178 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 179 ELFVVEFYSR 188 >gi|12330454|gb|AAG52764.1| ribosomal protein 4 [Sphagnum perichaetiale] Length = 188 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG I+ ++ + A R++ Sbjct: 5 PGLTSKTPQSKSNYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITXRQLLKYVRIARRAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 64 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 123 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 124 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 180 Query: 201 VEFYSR 206 VE+YSR Sbjct: 181 VEYYSR 186 >gi|121761814|gb|ABM64993.1| ribosomal protein S4 [Orthomnion bryoides] gi|121761825|gb|ABM64998.1| ribosomal protein S4 [Orthomnion nudum] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LNRDSIDLKINELLVVEYYSR 193 >gi|3098256|gb|AAC15576.1| small ribosomal protein 4 [Syntrichia ruralis] Length = 196 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|3098226|gb|AAC15561.1| small ribosomal protein 4 [Leptotheca boliviana] Length = 200 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N R V+I SYRCK D I +K + K A + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILINDRIVDIPSYRCKPQDFITIKDQRKSQAIINKNLDFYQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + L+VE+YSR Sbjct: 158 KIPNHLTYNSLEKKGVVNQI---LNRESIDLKINELLIVEYYSR 198 >gi|289599883|gb|ADD12892.1| ribosomal protein S4 [Dillenia triquetra] Length = 167 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 98/171 (57%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L+ Sbjct: 60 ILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKNEHKSRAMIQNYLD 119 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 SS--PHEELPKHLTLHPFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 165 >gi|262192914|gb|ACY30474.1| small ribosomal subunit protein 4 [Bryum apiculatum] Length = 188 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V+HRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 86 GMAPTIPGARQLVSHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 146 KTPNHLTYNFFKKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|107770425|gb|ABF83754.1| small ribosomal protein 4 [Amentotaxus argotaenia] gi|107770427|gb|ABF83755.1| small ribosomal protein 4 [Amentotaxus yunnanensis] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 95/169 (56%), Gaps = 13/169 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + + L+ KQ+++ YG ++E++ + A R+ G T L+ LE RLD I++R Sbjct: 30 KPSKYPVCLKEKQRLRFNYG-LTERQLLQYVRIARRANGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K + + + + L++RD Sbjct: 89 GMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSRNIINKNIDLSQRD 148 Query: 164 ---VPEYISVNHDNMV---ATFVRIPSSLKDVP-YPVIMQPNLVVEFYS 205 VP NH N++ + ++ + + D + + LVVE+YS Sbjct: 149 KIWVP-----NHLNLLKKKSQYIGLVKKIIDSKRISLKINELLVVEYYS 192 >gi|33413179|emb|CAD86768.1| ribosomal protein small subunit 4 [Seligeria polaris] Length = 182 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D +K + K A +++ +++ Sbjct: 80 GMAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFFTIKDRQKSQAMIIKNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 140 KVPNHLTFNSLEKKGLVNQI---LDHESIGLKINELLVVEYYSR 180 >gi|16565387|gb|AAL26208.1|AF313608_1 small ribosomal protein 4 [Marsilea mutica] Length = 188 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|74273243|gb|ABA01321.1| ribosomal protein S4 [Paropsia brazzaeana] Length = 200 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 15/175 (8%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 + R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD Sbjct: 16 AESRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPIGLVLLQLLEMRLD 74 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLE 155 I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKSK + Sbjct: 75 NILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDLITAKDEQKSKDMIQNSL 134 Query: 156 ASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 S + +PE+++ + H +V + D + V +Q N LVVE+YSR Sbjct: 135 NSFPKGKKLPEHLTFDPFHKGLVNQII-------DRKW-VGLQINELLVVEYYSR 181 >gi|293634095|gb|ADE60427.1| ribosomal protein subunit 4 [Polytrichastrum ohioense] Length = 190 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 88 GMASTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|246880741|gb|ACS95053.1| ribosomal protein S4 [Dunaliella salina] Length = 252 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 31/217 (14%) Query: 1 MSKRESSKHKIDRRIGENLWG-----------RPKSPVNTRSYGPGLHGQRR--KSKP-- 45 M++ K KI RRIG+ L G R + P+ + PG HG + K++P Sbjct: 1 MARYIGPKLKIIRRIGK-LRGLTRKKPFRRVYRGRGPLRGKVIPPGQHGLIKLFKTRPYD 59 Query: 46 ---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 S + ++L+ KQ+++ YG ++E++ + ++A + + T L+ LE RLD IV+R Sbjct: 60 SCESDYLIRLKVKQRLRYNYG-LTERQLVNYVRKAKKIKEATGQVLLQLLEMRLDNIVFR 118 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 PTI AARQ+++H H+ VN + VNI SY CK DVI V K K L L R Sbjct: 119 LNMAPTIVAARQYISHGHIRVNNKKVNIPSYMCKPKDVISVAMKEKSLI-------LINR 171 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 ++ EY + M R+ +L + + + + PN+ Sbjct: 172 NLNEY----YQRMQFYKKRLEKTLAFILFQLKLVPNM 204 >gi|108861074|gb|ABG21409.1| ribosomal protein small subunit 4 [Marsilea crotophora] Length = 200 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKAPNPRESRVAA----DQSTSKKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 69 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 128 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 129 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|28194725|gb|AAO33624.1|AF480979_1 ribosomal protein S4 [Pseudocrossidium hornschuchianum] Length = 196 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHKHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDSSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 154 KIPNHLSFNSLEKKGLINQI---LNQESIGLKINELLVVEYYSR 194 >gi|26399097|sp|P59138|RR4_CYABU RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504377|emb|CAC80633.1| small ribosomal protein 4 [Cyathophorum bulbosum] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SY+CK D I +K + K A + + + ++ Sbjct: 100 GMFPTIPGARQLVNHRHILVNGPIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N+ +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNYLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 200 >gi|270300647|gb|ACZ69402.1| ribosomal protein S4 [Radula episcia] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 24/215 (11%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTIKPKSSFIDRSMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A ++G T LI LE RLD ++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNTKGSTGQVLIQLLEMRLDNTIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERDVPEYISVNHDN 174 VNH+H+++N +VNI SY C+ GD+I ++ Q+ +L + + ++P NH N Sbjct: 112 VNHKHIVINNNTVNIPSYNCEFGDIITIRNQQKSRLIITRNINSFQKLEIP-----NHLN 166 Query: 175 MVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 T +R S + + Y I + LVVE+YSR Sbjct: 167 FDLTQLR-GSINQRIDYNSISFKINELLVVEYYSR 200 >gi|49182682|gb|AAT57803.1| small ribosomal protein [Bryopteris filicina] Length = 192 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 100/183 (54%), Gaps = 14/183 (7%) Query: 34 PGLHGQRRKSKP---------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL G+ K+K S + ++L KQK++ +YG ++E++ + A +++G T Sbjct: 12 PGLTGKISKTKIDRSVLNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGST 70 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++ PTI +ARQ VNHRH+ +N +NI SY CK GD+I +K Sbjct: 71 GQVLLQLLEMRLDNTIFCLGMAPTIPSARQLVNHRHIFINDYILNIPSYNCKPGDIITIK 130 Query: 145 QKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K K + + + L+++ +P +++ + + + +++ + + LVVE+ Sbjct: 131 NKEKSQSIISKNINLSQKLQIPNHLTFDSTQLRGL---VNQTIRREWIDLKINELLVVEY 187 Query: 204 YSR 206 YSR Sbjct: 188 YSR 190 >gi|45271096|gb|AAS56931.1| ribosomal protein small subunit 4 [Selliguea lanceola] Length = 182 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD I++ Sbjct: 20 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNIIFHL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + ++ ++ Sbjct: 79 GLASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNALRNKFTGGDK- 137 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN V ++ + V + LVVE+YSR Sbjct: 138 TPDHLTISLSEDNKPTGLVNCVANRESVNLNI--NELLVVEYYSR 180 >gi|46811034|gb|AAT01835.1| small ribosomal protein 4 [Neohodgsonia mirabilis] Length = 178 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 17 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N +V+I SY CK DVI +K + K + V + + ++ Sbjct: 76 GMAPTIPGARQLVNHRHILINDNTVDIPSYNCKPKDVITIKNRQKSQSIVTKNLNSFQKQ 135 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ + + F + + + D + + + LVVE+YSR Sbjct: 136 KIPNHLNFD----LIQFKGLVNQIIDREWIYLKINELLVVEYYSR 176 >gi|162415078|gb|ABX89113.1| ribosomal protein S4 [Syntrichia bidentata] Length = 186 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 184 >gi|12330538|gb|AAG52806.1| ribosomal protein 4 [Neomeesia paludella] gi|42718110|gb|AAS38477.1| rps4 [Neomeesia paludella] Length = 189 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVDIPSYRCKPKDFITIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKRQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|3098224|gb|AAC15560.1| small ribosomal protein 4 [Rhacocarpus purpurascens] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N R V+I SYRCK D I VK + K A + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILINDRIVDIPSYRCKPQDFITVKDRQKSQAIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLKKKGLVNQI---LDRELIGLKINELLVVEYYSR 193 >gi|305672323|gb|ADM63585.1| ribosomal protein S4 [Pratia angulata] Length = 173 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 9/137 (6%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 G R+KS+ + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 28 GSRKKSQ---YRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLD 83 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVL 154 I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I K K + + L Sbjct: 84 NILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITAKDDGKSKVLIQNSL 143 Query: 155 EASQLAERDVPEYISVN 171 ++S ++P +++++ Sbjct: 144 DSS--PHEELPNHLTLD 158 >gi|74273177|gb|ABA01288.1| ribosomal protein S4 [Passiflora ischnoclada] Length = 183 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++ +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQKKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|121761829|gb|ABM65000.1| ribosomal protein S4 [Plagiomnium maximoviczii] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 193 >gi|118627522|emb|CAL39395.1| small ribosomal protein 4 [Lophozia ciliata] Length = 202 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKIKIPSHLTFDLPQLKGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|49182744|gb|AAT57834.1| small ribosomal protein [Lepidolaena sp. Engel 23052] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL ++ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKKLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+ +N +V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHRHISINNETVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + + + + ++P ++++N + + I +++ + + LV Sbjct: 131 TIRNREKSQSIITKNINSFHKSEIPNHLTLNSTQLRGS---INTTIHRECIDLKVNELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|58293883|gb|AAW69888.1| small ribosomal protein 4 [Zygodon bartramioides] Length = 189 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D+I +K + K + + + ++ Sbjct: 87 NMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPQDLITIKNRQKSQDIITKNIEFYQKY 146 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTYN 155 >gi|63191879|gb|AAY34899.1| small ribosomal protein subunit 4 [Gymnostomiella vernicosa] Length = 198 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNH+H+LVN R +NI SYRCK D I +K + K Q+ + Sbjct: 96 GMAPTIPGARQLVNHKHILVNNRIINIPSYRCKPQDFITIKDRQKSQVLITKNIGFFQKS 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|305672251|gb|ADM63549.1| ribosomal protein S4 [Pseudonemacladus oppositifolius] Length = 170 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 8/141 (5%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G KSP R+ Q K S + ++L KQK++ +YG ++E++ Sbjct: 4 RRLGALPGLTNKSPKAVRN-------QLGSGKKSQYRIRLEEKQKLRFHYG-LTERQLLK 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVNGR V+I S Sbjct: 56 YVRIAGKAKGPTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASV 153 YRCK D I K + K A + Sbjct: 116 YRCKPRDTITAKDERKSKALI 136 >gi|293611956|gb|ADE48422.1| ribosomal protein 4 [Bowenia serrulata] Length = 181 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-LTERQLLQYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK DVI V+ + + A + + L+++D Sbjct: 79 GMASTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVITVRDQQRSRAMIEKNLDLSQKD 138 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + + LVVE+YSR Sbjct: 139 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKI--NELLVVEYYSR 179 >gi|293634011|gb|ADE60385.1| ribosomal protein subunit 4 [Oligotrichum austroaligerum] Length = 189 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 87 GMASTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|18027966|gb|AAL55907.1| ribosomal protein S4 [Eriosorus insignis] Length = 191 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSVDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + V + Sbjct: 123 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 179 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 180 ELFVVEFYSR 189 >gi|37960595|gb|AAP70667.1| small ribosomal protein 4 [Sphagnum perichaetiale] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG I+ ++ + A R++ Sbjct: 12 PGLTSKTPQSKSNYINQPISNKKVSQYRIRLEEKQKLRFHYG-ITXRQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 71 GSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 130 Query: 142 EVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K A + + + P +++++ + +I + + + LV Sbjct: 131 TIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQI---IDRESIGLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|63101089|gb|AAY33169.1| small ribosomal protein 4 [Orthorrhynchium elegans] Length = 198 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 4/146 (2%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S+ +H K S + ++L KQK++ +YG I+E Sbjct: 4 RMRIIRRLGTLPGLTNKTPQLKSSF---IHQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 59 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI+ ARQ VNHRH+LVN Sbjct: 60 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIYGARQLVNHRHILVNDCI 119 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASV 153 V+I SYRCK D I +K + A + Sbjct: 120 VDIPSYRCKPQDFITIKNQQNSEALI 145 >gi|74273223|gb|ABA01311.1| ribosomal protein S4 [Passiflora umbilicata] Length = 183 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DTKW-VGLQINELLVVEYYSR 181 >gi|121761853|gb|ABM65012.1| ribosomal protein S4 [Plagiomnium maximoviczii] Length = 192 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+R D I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRSDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 150 KIPDHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 190 >gi|12642252|gb|AAK00208.1| rps4 [Fissidens subbasilaris] Length = 195 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDQQKYQIMIIKNVNFSQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLVKQI---LDQESIGLKINELLVVEYYSR 193 >gi|3098178|gb|AAC15537.1| small ribosomal protein 4 [Cyrtomnium hymenophyllum] Length = 189 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRSDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|3914846|sp|O20210|RR4_DIERO RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292844|emb|CAA92537.1| ribosomal protein S4 [Dietes robinsoniana] Length = 182 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 4/133 (3%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD I+ Sbjct: 30 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGLVLLQLLEMRLDNIL 88 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I KQ+SK L AS Sbjct: 89 FRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASS 148 Query: 159 LAERDVPEYISVN 171 E ++P +++++ Sbjct: 149 PHE-ELPNHLTID 160 >gi|162415074|gb|ABX89111.1| ribosomal protein S4 [Syntrichia caninervis var. spuria] gi|162415100|gb|ABX89124.1| ribosomal protein S4 [Didymodon fallax] gi|162415110|gb|ABX89129.1| ribosomal protein S4 [Barbula coreensis] Length = 186 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 184 >gi|67035767|gb|AAY62814.1| small ribosomal protein subunit 4 [Leptotheca boliviana] Length = 197 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N R V+I SYRCK D I +K + K A + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILINDRIVDIPSYRCKPQDFITIKDQRKSQAIINKNLDFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + L+VE+YSR Sbjct: 155 KIPNHLTYNSLEKKGVVNQI---LNRESIDLKINELLIVEYYSR 195 >gi|42718084|gb|AAS38464.1| rps4 [Tayloria mirabilis] Length = 189 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIINKNIEFHQKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNNLIYNSLKKQGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|12330500|gb|AAG52787.1| ribosomal protein 4 [Zygodon viridissimus] gi|58293885|gb|AAW69889.1| small ribosomal protein 4 [Zygodon inermis] Length = 189 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R+V+I YRCK D I +K + K + + + +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRTVDIPGYRCKPQDFITIKNRQKSQDIITKNIEFYQKN 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGFINQI---LDRELIGLKINELLVVEYYSR 187 >gi|63191797|gb|AAY34858.1| small ribosomal protein subunit 4 [Triquetrella californica] Length = 191 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 89 GMAPTIPGARQIVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|121761754|gb|ABM64964.1| ribosomal protein S4 [Plagiomnium elatum] Length = 195 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LNRDSIDLKINELLVVEYYSR 193 >gi|11228647|gb|AAG33109.1| small ribosomal protein 4 [Fissidens subbasilaris] Length = 185 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLPEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 83 GMTPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDQQKYQIMIIKNVNFSQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVKQI---LDQESIGLKINELLVVEYYSR 183 >gi|330850632|ref|YP_004376513.1| ribosomal protein S4 [Ptilidium pulcherrimum] gi|302024761|gb|ADK89607.1| ribosomal protein S4 [Ptilidium pulcherrimum] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTGKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY CK GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIPSYNCKPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + L ++ +P +++ + + + + + + + LV Sbjct: 138 TIKNREKSQSIITRNINLFQKLKIPNHLTFDLTQLRGS---VNQMIHREWIHLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|297179939|gb|ADI23949.1| small ribosomal protein 4 [Ambuchanania leucobryoides] Length = 184 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRHVLVN +VNI SYRCK D I ++ + K A + Sbjct: 82 GMAPTIPGARQLVNHRHVLVNNHTVNIPSYRCKPRDFIIIRDRQKSQAII 131 >gi|121761820|gb|ABM64996.1| ribosomal protein S4 [Plagiomnium maximoviczii] Length = 195 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSINLKINELLVVEYYSR 193 >gi|63078650|gb|AAY29411.1| ribosomal protein S4 [Triquetrella tristicha] Length = 197 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 95 GMAPTIPGARQIVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 195 >gi|37548865|gb|AAO32701.1| ribosomal protein 4 [Pogonatum nipponicum] Length = 186 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLXEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|3914847|sp|O20213|RR4_FURGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292864|emb|CAA92564.1| ribosomal protein S4 [Furcraea gigantea] Length = 194 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNPLRSVKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ V HRH+LVNGR V+I SYRCK D+I KQ+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVTHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 AS E ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNYIASSPHE-ELPNHLTIDSFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 192 >gi|37992467|gb|AAR06412.1| small ribosomal protein 4 [Crossomitrium epiphyllum] Length = 199 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHRH+L+N V+I SYRCK D I +K K K + + + ++ Sbjct: 97 GMAPTIPAARQLVNHRHILINDFLVDIPSYRCKSQDFITIKNKQKSKTIISKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|7109195|gb|AAF36673.1| ribosomal protein 4 [Aulacopilum hodgkinsoniae] Length = 190 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVN R VNI SYRCK D+I +K + K +L+ + Sbjct: 88 GMALTIPGARQLVNHKHILVNNRIVNIPSYRCKPQDLITIKNRQKSQGIILKNVDFSXXF 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 148 KVPIHLTFNSLEKKGIVNQI---LDQESIGLKINELLVVEYYSR 188 >gi|307602303|gb|ADN68033.1| ribosomal protein S4 [Juniperus drupacea] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLRSSKYPVRLKEKQRLRFHYG-LPERQLLQYIRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K ++ Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNRMKK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|108773080|ref|YP_635989.1| ribosomal protein S4 [Scenedesmus obliquus] gi|122179524|sp|Q1KVT5|RR4_SCEOB RecName: Full=30S ribosomal protein S4, chloroplastic gi|88696646|gb|ABD48272.1| ribosomal protein S4 [Scenedesmus obliquus] Length = 251 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 31/217 (14%) Query: 1 MSKRESSKHKIDRRIGENLWG-----------RPKSPVNTRSYGPGLHGQRR--KSKP-- 45 MS+ + +I RRIG+ L G R + + + PG HG + KS+P Sbjct: 1 MSRYIGPRLRIIRRIGK-LRGFTRKKPFRRSFRGRGALQGKVIPPGQHGLTKLFKSRPFD 59 Query: 46 ---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 S + ++L+ KQ+++ YG I+EK+ ++A + + T L+ LE RLD IV+R Sbjct: 60 SNESDYLIRLKVKQRLRYNYG-ITEKQLVKYVRQAKKMKESTGQVLLQLLEMRLDNIVFR 118 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 PTI AARQ ++H H+ VN + VNI SY CK DVI V K L +L R Sbjct: 119 LNMAPTICAARQLISHGHIHVNSKKVNIASYMCKPKDVISVSMKQSSL-------KLVNR 171 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 ++ EY M A R+ +L V + + PN+ Sbjct: 172 NLQEY----SQKMSAYKKRLERTLAYVLFQRNISPNM 204 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 71 RSIFKEADRSRGDTSHNLISF---LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 +S K +R+ + S + ++ LE L ++++ P + A +++N V VN R Sbjct: 163 QSSLKLVNRNLQEYSQKMSAYKKRLERTLAYVLFQRNISPNMANALEYINQGKVQVNNRK 222 Query: 128 VNIGSYRCKEGDVIEVK 144 V + +Y C D+I VK Sbjct: 223 VLLPNYLCHSKDMISVK 239 >gi|17025858|gb|AAL32094.1| ribosomal protein 4 [Mitthyridium sp. Wall 3848] Length = 199 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 153 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N + I L + + LVVE+YSR Sbjct: 154 -PKHKTPNHLTFNSIEKKGLINQILDQESIGLKINELLVVEYYSR 197 >gi|12330480|gb|AAG52777.1| ribosomal protein 4 [Aplodon wormskioldii] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLQKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|63100983|gb|AAY33116.1| small ribosomal protein 4 [Vesicularia vesicularis] Length = 194 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI YRCK D+I +K + K + + + +R Sbjct: 92 GMAPTIAGARQLVNHRHILVNHCIVNISGYRCKPQDIITIKNQQKSETIINKNIEFYQRS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|15145870|gb|AAK83553.1| rps4 [Tayloria gunnii] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N+ +I L + + LVVE+YSR Sbjct: 147 KIPTHLIYNYLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|77862557|gb|ABB04551.1| small ribosomal protein 4 [Ricciocarpos natans] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 36/221 (16%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSK Y + Sbjct: 1 MSRYRGPRVKIIRRLGA---------------LPGLTNKTLKSKSGYINQSTSNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEY 167 I ARQ VNHRH+L+N +V+I SY CK DVI +K + K + + + + ++ +P + Sbjct: 105 IPGARQLVNHRHILINNSTVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKQKIPNH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++ + + + + + D + + ++ N LVVE+YSR Sbjct: 165 LTFD----LMQVKGLVNQIIDREW-IFLKINELLVVEYYSR 200 >gi|42556490|gb|AAS19840.1| small ribosomal protein 4 [Ptilidium pulcherrimum] Length = 191 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 8 PGLTGKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY CK GD+I Sbjct: 67 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIPSYNCKPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIKNREKSQSIITRNINLFQKLKIPNHLTFDLTQLRGS---VNQMIHREWIHLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|32892094|gb|AAP88986.1| ribosomal protein S4 [Passiflora sidifolia] Length = 183 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 18/187 (9%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-VTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P++++++ +I S V +Q N L Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQIIDSTW-----VGLQINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|63191795|gb|AAY34857.1| small ribosomal protein subunit 4 [Aloina rigida] Length = 191 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 149 KRPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 189 >gi|157887714|emb|CAM33379.1| ribosomal protein S4 [Leptodontium paradoxum] gi|157887716|emb|CAM33380.1| ribosomal protein S4 [Leptodontium paradoxum] Length = 197 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 95 GMAPTIPGARQIVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 195 >gi|33413251|emb|CAD86760.1| ribosomal protein small subunit 4 [Octoblepharum albidum] Length = 195 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTEQQLLNYMRVARKTKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHR++LVN VNI SYRCK DVI +K + +++ + ++ Sbjct: 93 GMAPTIPAARQLVNHRYILVNNCIVNIPSYRCKPHDVITIKDRQSSQKMIVKNVEFFQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 153 KIPNHLSFNALEKKGLVKQI---LDQEFVGLKINELLVVEYYSR 193 >gi|28194665|gb|AAO33594.1|AF480949_1 ribosomal protein S4 [Triquetrella tristicha] gi|28194735|gb|AAO33629.1|AF480984_1 ribosomal protein S4 [Triquetrella arapilensis] gi|157887692|emb|CAM33368.1| ribosomal protein S4 [Triquetrella arapilensis] gi|157887694|emb|CAM33369.1| ribosomal protein S4 [Triquetrella californica] gi|157887696|emb|CAM33370.1| ribosomal protein S4 [Triquetrella papillata] gi|157887700|emb|CAM33372.1| ribosomal protein S4 [Triquetrella patagonica] gi|157887702|emb|CAM33373.1| ribosomal protein S4 [Triquetrella patagonica] gi|157887704|emb|CAM33374.1| ribosomal protein S4 [Triquetrella mxinwana] gi|157887706|emb|CAM33375.1| ribosomal protein S4 [Triquetrella mxinwana] gi|157887708|emb|CAM33376.1| ribosomal protein S4 [Triquetrella mxinwana] gi|157887710|emb|CAM33377.1| ribosomal protein S4 [Triquetrella tristicha] gi|157887712|emb|CAM33378.1| ribosomal protein S4 [Triquetrella tristicha] Length = 196 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQIVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|47606934|gb|AAT36387.1| ribosomal protein subunit 4 [Pyrrhobryum novae-caledoniae] Length = 195 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G K+P T S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 RIIRRLGALPGLTNKTPQLTSS---SINQSTSNRKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R ++ Sbjct: 59 LLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIID 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 119 IPSYRCKPQDFITIKDREKYQTIISKNIDFYQKYKIPNHLTYNFLEKKGVVNQI---LDR 175 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ESISLKINELLVVEYYSR 193 >gi|14090440|gb|AAK53505.1| small ribosomal protein 4 [Syrrhopodon confertus] Length = 182 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K Q V S ++ Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYHCKPQDFITIKDQQKYQTMIVKNTSFFSKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 140 KTPNHLIFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|270300645|gb|ACZ69401.1| ribosomal protein S4 [Radula antilleana] gi|270300649|gb|ACZ69403.1| ribosomal protein S4 [Radula nudicaulis] gi|270300651|gb|ACZ69404.1| ribosomal protein S4 [Radula nudicaulis] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 24/215 (11%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTIKPKSSFIDRSMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A ++G T LI LE RLD ++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNTKGSTGQVLIQLLEMRLDNTIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDN 174 VNH+H+++N +VNI SY C+ GD+I ++ + K +L + + ++P NH N Sbjct: 112 VNHKHIVINNNTVNIPSYNCEFGDIITIRNRHKSRLIITRNINSFQKLEIP-----NHLN 166 Query: 175 MVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 T +R S + + Y I + LVVE+YSR Sbjct: 167 FDLTQLR-GSINQRIDYNSISFKINELLVVEYYSR 200 >gi|305672333|gb|ADM63590.1| ribosomal protein S4 [Dialypetalum sp. Koopman et al. s.n.] Length = 173 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 6/131 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 31 KKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNILFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+LVNGR V+I SYRCK D I K K + + L++S Sbjct: 90 GMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITAKDDGKSKVLIQNSLDSS--P 147 Query: 161 ERDVPEYISVN 171 ++P +++++ Sbjct: 148 HEELPNHLTLD 158 >gi|159106799|ref|YP_001531219.1| ribosomal protein S4 [Cuscuta obtusiflora] gi|172048141|sp|A8W3I9|RR4_CUSOB RecName: Full=Plastid 30S ribosomal protein S4 gi|158142523|gb|ABW20564.1| ribosomal protein S4 [Cuscuta obtusiflora] Length = 197 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 15/208 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP R L Q R S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKSPRAIRD----LRNQSR----SEYRIRLEEKQKLRF 52 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 53 HYG-LTEKQLINYVQIARKAKGSTGKVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 111 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-F 179 VLVNGR V+ SYRCK D+I K +K + VL + L E NH N+ +T + Sbjct: 112 VLVNGRLVDRPSYRCKPRDIIMPKNTTK--SGVLVQNSLELFTGKEL--ANHLNLFSTPY 167 Query: 180 VRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + + D + + + LVVE+YSR Sbjct: 168 KGLVNKIVDTNWIGLKINELLVVEYYSR 195 >gi|67035861|gb|AAY62857.1| small ribosomal protein subunit 4 [Papillidiopsis complanata] Length = 194 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K + + + E+ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNKRKSETIISKNIEFYEKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|222103424|gb|ACM44241.1| small ribosomal protein subunit 4 [Blasia pusilla] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG I+E++ + A +++ Sbjct: 19 PGLTNKILKSKSGYLNPSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK D+I Sbjct: 78 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNINVDIPSYNCKPKDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + + +P +++ + + F + + + D + + ++ N Sbjct: 138 TIKNRQKSQSIITKNLNSFQKSKIPNHLTFD----LIQFKGLVNQIIDREW-INLKINEL 192 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 193 LVVEYYSR 200 >gi|162415090|gb|ABX89119.1| ribosomal protein S4 [Syntrichia gemmascens] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ-KSKQLASVLEASQLAER 162 PTI ARQ VNHRH+LVN VNI SYRCK D I + K Q+ + Sbjct: 87 GMAPTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITINDSKKSQVMITKNVDSFQKS 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LNQESIGLKINELLVVEYYSR 187 >gi|121761886|gb|ABM65028.1| ribosomal protein S4 [Orthomnion dilatatum] Length = 195 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ N N +I L + + LVVE+YSR Sbjct: 153 EIPNHLTYNSLNKKGLVNQI---LDRNSIDLKINELLVVEYYSR 193 >gi|49182702|gb|AAT57813.1| small ribosomal protein [Dumortiera hirsuta] Length = 194 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 70 GSTGQVLLQLLEMRLDNIIFRLGMTSTIPGARQLVNHRHILINNNTVDIPSYNCKPKDVI 129 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNL 199 +K +SK + + + + ++ +P +++ + + I + + D + + + L Sbjct: 130 TIKDRSKSQSIITKNLNSFQKQKIPNHLAFD----LMQIKGIVNQIIDREWISLKINELL 185 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 186 VVEYYSR 192 >gi|15145862|gb|AAK83549.1| rps4 [Tayloria mirabilis] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEKKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIINKNIEFHQKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNNLIYNSLKKQGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|15145866|gb|AAK83551.1| rps4 [Tayloria tasmanica] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKTKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNRQKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLIYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|17025855|gb|AAL32093.1| ribosomal protein 4 [Mitthyridium sp. Wall 3864] Length = 199 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 153 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 154 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|67035722|gb|AAY62792.1| small ribosomal protein subunit 4 [Octoblepharum albidum] Length = 200 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KVSQYRIRLEEKQKLRFHYG-LTEQQLLNYMRVARKTKGSTGQVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHR++LVN VNI SYRCK DVI +K + +++ + ++ Sbjct: 98 GMAPTIPAARQLVNHRYILVNNCIVNIPSYRCKPHDVITIKDRQSSQKMIVKNVEFFQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 158 KIPNHLSFNALEKKGLVKQI---LDQEFVGLKINELLVVEYYSR 198 >gi|67036056|gb|AAY62954.1| small ribosomal protein subunit 4 [Dichelyma falcatum] Length = 194 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYKKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YIS+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYISLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|26399110|sp|P59145|RR4_HYPLA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504361|emb|CAC81024.1| small ribosomal protein 4 [Hypopterygium laricinum] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMV 176 +LVNG V+I SYRCK D I +K + K A + + + ++ +P Y S+ +V Sbjct: 117 ILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILNRKSIGLK-------INELLVVEYYSR 200 >gi|157887698|emb|CAM33371.1| ribosomal protein S4 [Triquetrella papillata] Length = 196 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQIVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLAFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|45271092|gb|AAS56930.1| ribosomal protein small subunit 4 [Hymenasplenium unilaterale] Length = 190 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 23 QSTSRKISQFCIRLEAKQRLRFNYG-LTERQLLRYVRIARKTRGSTGQVLLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L+ Sbjct: 82 VLFQLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDIITVRNRPTS-CNALKGES 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + P++++V+ N VA + ++ ++ LVVE+YSR Sbjct: 141 LGGDETPDHLTVSLSEGDRPTGLVNHVANRESVNLNINEL---------LVVEYYSR 188 >gi|63191753|gb|AAY34836.1| small ribosomal protein subunit 4 [Leiomitrium plicatum] Length = 196 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNHRIVNIPSYRCKPLDFITIKDRQK 138 >gi|290467469|gb|ADD25852.1| small ribosomal protein 4 [Hymenophyllum dimidiatum] Length = 187 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 141 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + + LVVE+YSR Sbjct: 142 KIPDHLTFSFSEDNIPKGLVNGIANRESIDFNI--NELLVVEYYSR 185 >gi|262192910|gb|ACY30472.1| small ribosomal subunit protein 4 [Bryum yuennanense] Length = 188 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNFYQK- 144 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 145 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 186 >gi|146261559|gb|ABQ15089.1| ribosomal protein S4 [Daphniphyllum sp. 205-82] Length = 184 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 15 LRKQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMR 73 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-- 153 LD ++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + K A + Sbjct: 74 LDNTLFRLGMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQN 133 Query: 154 -LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S ++P++++++ +I S K V + LVVE+YSR Sbjct: 134 YLDSS--PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|29422393|gb|AAO84592.1| small ribosomal protein 4 [Breutelia affinis] Length = 197 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 5/160 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R P Sbjct: 40 YRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAP 98 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE 166 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ +P Sbjct: 99 TIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPN 158 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ N +I L + + LVVE+YSR Sbjct: 159 HLTYNSLENKGLVNQI---LDRESIGLXINELLVVEYYSR 195 >gi|12642212|gb|AAK00188.1| rps4 [Theriotia lorifolia] Length = 186 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 94/165 (56%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K + +++ +++ Sbjct: 84 GMTPTIPGARQLVNHRHILVNERIVNIPSYHCKPQDFITIKDRQKSQSIIVKNMDFSQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ + + + + D Y + + LVVE+YSR Sbjct: 144 KIPNHLTFDSLEKKG----LVNQVLDREYIGLKINELLVVEYYSR 184 >gi|147669123|ref|YP_001213941.1| 30S ribosomal protein S4 [Dehalococcoides sp. BAV1] gi|146270071|gb|ABQ17063.1| SSU ribosomal protein S4P [Dehalococcoides sp. BAV1] Length = 197 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 14/186 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK P GP L RR S G QLR KQ ++ YG ++E++FR F A+ Sbjct: 25 RPKPP------GPQLGRPRRLSDR---GQQLRQKQSIRWSYG-MTERQFRRFFGLANAQP 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T N++ LE RLD +++R F + ARQ V H H+LVNG+ +I SY KEG I Sbjct: 75 GVTGDNMMILLERRLDNVLFRLGFGTSRAQARQIVMHGHILVNGQKTDIPSYLIKEGQEI 134 Query: 142 EVKQKSKQLASV-LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V++ SK A A + + +P ++S++ + + +P++ D+ Q V Sbjct: 135 TVRETSKATAYFKTLAENIEAKAIPGWLSLDRKTLSGKVISLPNA-GDIDARFDAQ--TV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|157689412|gb|ABV65262.1| ribosomal protein S4 [Anisoptera marginata] Length = 191 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 11/172 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 25 QSRPGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEA 156 I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I + QKS+ L Sbjct: 84 ILFRLGMASTIPQARQLVNHRHILVNDRIVDIPSYRCKPRDIISARDGQKSRALIQNYLD 143 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 S + E ++P++++++ + + + + D + V ++ N LVVE+YSR Sbjct: 144 SAIPE-ELPKHLTLH----TLQYKGLVNQIIDRKW-VGLKINELLVVEYYSR 189 >gi|42556476|gb|AAS19833.1| small ribosomal protein 4 [Paraschistochila tuloides] Length = 191 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTLKPKSSYTDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINKNIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 AIKNKQKSQSMITRNLNLLQKFKIPNHLTFDSTQLQGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|25986663|gb|AAN52768.1| ribosomal protein small subunit 4 [Selliguea enervis] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 27 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + ++ ++ Sbjct: 86 GIASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNALRNKFTGGDK- 144 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN V ++ + V + LVVE+YSR Sbjct: 145 TPDHLTISLSEDNKPTGLVNCVANRESVNLNI--NELLVVEYYSR 187 >gi|289576430|dbj|BAI77789.1| ribosomal protein small subunit 4 [Hymenophyllum atrovirens] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 25 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ER 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + + R Sbjct: 84 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIEFSRRR 143 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 144 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 187 >gi|219973410|gb|ACL68591.1| ribosomal protein small subunit 4 [Marsilea mutica] Length = 180 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 10 QSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 68 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 69 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 128 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 129 ESSRSNE--IPDHLSLS 143 >gi|37548885|gb|AAO32711.1| ribosomal protein 4 [Polytrichum piliferum] Length = 192 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG +E++ + + A R++G T L+ LE RLD I++R Sbjct: 31 KMSQYRIRLEEKQKLRFHYGX-TERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 PTI ARQ VNH H+LVN R +NI SYRCK D I +K + + A + ++ SQ Sbjct: 90 GMAPTIPGARQLVNHXHILVNDRIINIPSYRCKPQDFITIKDRQESQAIIARNIDXSQXX 149 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ N +I L + + LVVE+YSR Sbjct: 150 K--IPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|15145830|gb|AAK83533.1| rps4 [Tetraplodon pallidus] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V I SYRCK D I +K + K A + + + ++ Sbjct: 87 GXAPTIPGARQLVNHRHILVNDRIVXIPSYRCKPQDFITIKDRQKSQAIINKNIEFYQKY 146 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTYN 155 >gi|63191845|gb|AAY34882.1| small ribosomal protein subunit 4 [Anoectangium aestivum] Length = 186 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-IXERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKNRQKSQVMITKNIDFSQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 184 >gi|118724455|gb|ABL10801.1| ribosomal protein small subunit 4 [Cheilanthes arizonica] Length = 188 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVNGR V+I SYRCK D++ ++ + + + Sbjct: 80 VIFQLGMASTIPAARQLVNHRHILVNGRIVDIPSYRCKPKDILTIRNRLTSYNAA-KVKS 138 Query: 159 LAERDVPEYISV 170 L ++P+++++ Sbjct: 139 LGRDEIPDHLTL 150 >gi|118627526|emb|CAL39397.1| small ribosomal protein 4 [Lophozia longiflora] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|42718054|gb|AAS38449.1| rps4 [Splachnum sphaericum] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLIYNSLKKQGLVNQILDRQSIGLK-------INELLVVEYYSR 187 >gi|28194727|gb|AAO33625.1|AF480980_1 ribosomal protein S4 [Tetrapterum tetragonum] gi|157887722|emb|CAM33383.1| ribosomal protein s4 [Tetrapterum tetragonum] Length = 196 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SY CK D I + + K + + +++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVNIPSYCCKPQDFITINDRKKSQVIITKNVDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLINQI---LDQDSIGLKINELLVVEYYSR 194 >gi|66866210|gb|AAY57778.1| small ribosomal protein 4 [Breutelia pendula] Length = 207 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + D Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNID 159 Query: 164 ------VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 FYQKYKIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 205 >gi|48927195|emb|CAE47533.1| small ribosomal protein 4 [Equisetum diffusum] Length = 207 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 6/192 (3%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 NL G V ++ + Q + K S + ++L AKQ+++ YG ++E++ + + A Sbjct: 17 NLPGLTNKLVESKKNQASGNDQSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIA 75 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 ++G T L+ LE RLD I++R FVPTI +ARQ +NHRH+LVN R V+I S+ CK Sbjct: 76 RCAKGSTGQILLQLLEMRLDNILFRLGFVPTIPSARQLINHRHILVNNRIVDIPSFHCKP 135 Query: 138 GDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + K+ Q A+ +P++ +S++ FV + + + + Sbjct: 136 KDIITIGAPKTYQSIITKRIEAFAKDQIPDHLTLSLSEQKKPKGFVNYLINRESIGLKI- 194 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 195 -NELLVVEYYSR 205 >gi|219973328|gb|ACL68550.1| ribosomal protein small subunit 4 [Marsilea deflexa] Length = 188 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 18 QSTSKKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 77 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 136 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 137 ESSRSNE--IPDHLSLS 151 >gi|17025839|gb|AAL32085.1| ribosomal protein 4 [Mitthyridium sp. Streimann 40876] Length = 201 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 99 GLAPTIPGARQLVNHRHILVNNNMVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 159 KTPTHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 199 >gi|289576418|dbj|BAI77783.1| ribosomal protein small subunit 4 [Hymenophyllum lyallii] gi|289576422|dbj|BAI77785.1| ribosomal protein small subunit 4 [Hymenophyllum rufescens] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 25 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + + R Sbjct: 84 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIEFSRRK 143 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 144 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 187 >gi|22854695|gb|AAN09767.1| small ribosomal protein 4 [Dicranum majus] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L +K++ +YG I+E++ + + A +++G T L+ LE RLD ++ R Sbjct: 28 KVSQYRIRLEENRKLRFHYG-ITERQLLNYIRIARKAKGSTGQVLLQLLEMRLDNVILRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I ++ + K A +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFSSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|293634041|gb|ADE60400.1| ribosomal protein subunit 4 [Pogonatum macrophyllum] Length = 187 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRELIGLKINELLVVEYYSR 185 >gi|289599911|gb|ADD12906.1| ribosomal protein S4 [Hibbertia drummondii] Length = 189 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 104/188 (55%), Gaps = 16/188 (8%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 RPK+ + R+ R K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 13 RPKTRSDLRNLS-------RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I Sbjct: 65 GSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDII 124 Query: 142 EVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 VK + K A + L++S ++P++++++ +I S K + + Sbjct: 125 TVKDEHKSRALIQNYLDSS--PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NEL 179 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 180 LVVEYYSR 187 >gi|157689524|gb|ABV65318.1| ribosomal protein S4 [Myrtus communis] Length = 185 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 101/177 (57%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 13 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 71 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + QKS+ + Sbjct: 72 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITARDDQKSRTM 131 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L++S ++P++++++ +I S K + + LVVE+YSR Sbjct: 132 IQNFLDSS--PHEEMPKHLTLHPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 183 >gi|17025866|gb|AAL32098.1| ribosomal protein 4 [Mitthyridium sp. Wall 2546] Length = 200 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 98 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 154 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 155 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 198 >gi|118626043|emb|CAL41746.1| small ribosomal protein 4 [Lophozia ventricosa var. confertifolia] gi|118627540|emb|CAL39403.1| small ribosomal protein 4 [Lophozia ventricosa var. ventricosa] Length = 202 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|46811022|gb|AAT01829.1| small ribosomal protein 4 [Jensenia connivens] Length = 197 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD IV+R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N VNI SY CK DVI +K + + + + + + L E+ Sbjct: 95 GMAPTIPGARQLVNHRHILINDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQ 154 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + +I SLK + LVVE+YSR Sbjct: 155 RIPNHLTFDSTRFCGSVNQIIDREWISLK-------INELLVVEYYSR 195 >gi|71679578|gb|AAZ38857.1| ribosomal protein small subunit 4 [Hymenophyllum flexuosum] Length = 183 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 19 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + + R Sbjct: 78 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIEFSRRK 137 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 138 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 181 >gi|62766396|gb|AAX99325.1| rpS4 [Helminthostachys zeylanica] Length = 191 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQK++ +G ++E++ + A R+ G T + LE RLD I++R Sbjct: 27 KISQYCIRLEAKQKLRFNHG-LTERQLLKYVRTARRASGSTGQVSLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLEASQLAE 161 PTI ARQ VNHRH+LVN R V+I SY CK DVI V+ + S+ L + AE Sbjct: 86 GISPTIPGARQLVNHRHILVNDRIVDIPSYHCKANDVITVRDQNNSRNLIGK-DVGSSAE 144 Query: 162 RDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + +S++ D+ + FV + + V L+VE+YSR Sbjct: 145 GRIPNHLSLSLSEDDKLKGFVNRMIDRESIGLKV--NELLIVEYYSR 189 >gi|32892108|gb|AAP88993.1| ribosomal protein S4 [Passiflora elegans] Length = 183 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSTFS-------RSGKKSQYCIRLEEKQKLRFHYG-VTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|307602297|gb|ADN68030.1| ribosomal protein S4 [Juniperus convallium] gi|307602325|gb|ADN68044.1| ribosomal protein S4 [Juniperus komarovii] gi|307602345|gb|ADN68054.1| ribosomal protein S4 [Juniperus pingii] gi|307602353|gb|ADN68058.1| ribosomal protein S4 [Juniperus przewalskii] gi|307602357|gb|ADN68060.1| ribosomal protein S4 [Juniperus coxii] gi|307602371|gb|ADN68067.1| ribosomal protein S4 [Juniperus saltuaria] gi|307602385|gb|ADN68074.1| ribosomal protein S4 [Juniperus tibetica] Length = 189 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K ++ Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNRMKK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKRIDNKRIGLKI--NELLVVEYYSR 187 >gi|74273225|gb|ABA01312.1| ribosomal protein S4 [Passiflora tryphostemmatoides] Length = 183 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIAKSAFS-------RPRRKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGPVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + ++ +P++++++ + +V + D + V ++ N Sbjct: 121 KDEQKSKDMIQN-SLDSFPQKKLPKHLTLHRFPYKGLVHEII-------DCKW-VGLEIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|6002069|emb|CAA58942.1| ribosomal protein S4 [Nelumbo nucifera] Length = 196 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 18/178 (10%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RPK+ G Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPKA-------GSDFRNQARSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I + QKS+ L + L++S ++P++++++ Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSS--PHEELPKHLTLH 167 >gi|33413239|emb|CAD86772.1| ribosomal protein small subunit 4 [Phascum cuspidatum] Length = 134 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R VNI SYRCK D I + ++ K Sbjct: 78 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINERKK 122 >gi|74273157|gb|ABA01278.1| ribosomal protein S4 [Passiflora clathrata] Length = 183 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 18/187 (9%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P++++++ + + + + D + V +Q N L Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHP----LQYKGLVNQIIDSKW-VGLQINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|92417455|gb|ABE76823.1| ribosomal protein subunit 4 [Fissidens taxifolius] Length = 196 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 94 GMTPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDQQKYQVMIIKNVNFSQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I + + + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVKQI---IDQESIGLKINELLVVEYYSR 194 >gi|86211249|gb|ABC87297.1| small ribosomal protein 4 [Hymenophyllum dimidiatum] Length = 182 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 18 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 77 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 136 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + + LVVE+YSR Sbjct: 137 KIPDHLTFSFSEDNIPKGLVNGIANRESIDFNI--NELLVVEYYSR 180 >gi|296936673|gb|ADH94345.1| ribosomal protein S4 [Syzygium cumini] Length = 201 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNG V+I SYRCK D+I + QKS+ + S E +VP++++++ Sbjct: 116 ILVNGCIVDIPSYRCKPRDIITARDDQKSRTMIQNYFDSSPHE-EVPKHLTLHPFQYKGL 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 175 VNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|269101005|ref|YP_003289153.1| 30S ribosomal protein S4 [Ectocarpus siliculosus] gi|266631513|emb|CAV31184.1| Chloroplast 30S ribosomal protein S4 [Ectocarpus siliculosus] gi|270118643|emb|CAT18689.1| Chloroplast 30S ribosomal protein S4 [Ectocarpus siliculosus] Length = 204 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 20/179 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +++KSK S + ++L KQK++ YG I+E + KEA R +G T L+ LE RLD Sbjct: 33 EQKKSKASPYKIRLNEKQKLRYNYG-ITESQLLRYVKEARRRKGLTGFLLMQLLEMRLDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R PTI AARQFV+H HV++N + VNI S++C+ D+I + K + + Sbjct: 92 IIFRLGLAPTIPAARQFVSHGHVMINKKRVNIPSFQCQPNDIISFSKNPKTVTLIKANLN 151 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSL-----------KDVPYPVIMQPNLVVEFYSR 206 E P +DN+ + + S L KD+ + + LV+E+YSR Sbjct: 152 QKENSNP------NDNVSNSHLEFDSQLLTGKIVNLIQRKDLRFKI--NDMLVIEYYSR 202 >gi|145848877|emb|CAJ91115.1| ribosomal protein S4 [Acrocladium auriculatum] Length = 196 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K K A + + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNKRKSEAIISKNIEFYQKS 153 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 154 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|37992575|gb|AAR06466.1| small ribosomal protein 4 [Lepidopilidium portoricense] Length = 199 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHIVVNDSIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKI 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N V I L + + LVVE+YSR Sbjct: 157 KIPNYLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 197 >gi|18028026|gb|AAL55937.1| ribosomal protein S4 [Jamesonia bogotensis] gi|18028028|gb|AAL55938.1| ribosomal protein S4 [Jamesonia bogotensis] Length = 191 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + + + Sbjct: 123 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESIDLEI--N 179 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 180 ELFVVEFYSR 189 >gi|58293861|gb|AAW69878.1| small ribosomal protein 4 [Leiomitrium plicatum] Length = 189 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVNIPSYRCKPLDFITIKDRQK 131 >gi|67035867|gb|AAY62860.1| small ribosomal protein subunit 4 [Radulina borbonica] Length = 191 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K + + + E+ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPHDFITIKNKQKSETIINKNIEFYEKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNSLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 189 >gi|28194755|gb|AAO33639.1|AF480994_1 ribosomal protein S4 [Tortula inermis] Length = 189 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISXYRIRLEEXQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRF 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|307602231|gb|ADN67997.1| ribosomal protein S4 [Cupressus atlantica] gi|307602237|gb|ADN68000.1| ribosomal protein S4 [Cupressus duclouxiana] gi|307602245|gb|ADN68004.1| ribosomal protein S4 [Cupressus sempervirens] Length = 189 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K V + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIVKK 134 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|157785989|gb|ABV74168.1| small ribosomal protein 4 [Hypopterygium tamarisci] gi|157785991|gb|ABV74169.1| small ribosomal protein 4 [Hypopterygium tamarisci] Length = 197 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILNRESIGLK-------INELLVVEYYSR 195 >gi|118626145|emb|CAL39370.1| small ribosomal protein 4 [Barbilophozia hatcheri] Length = 202 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + ++ + + LV Sbjct: 138 TIRSKQKSQSIITQNINLFQKLKIPSHLTFELAQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|17025814|gb|AAL32074.1| ribosomal protein 4 [Syrrhopodon trachyphyllus] Length = 198 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K Q + S ++ Sbjct: 96 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTSFFSKH 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 156 KTPNHLIFNSVEKKGFVNQI---LDHESIGLKINELLVVEYYSR 196 >gi|11121335|emb|CAC14831.1| ribosomal protein subunit 4 [Racopilum tomentosum] Length = 192 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 50/111 (45%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRF 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K QKS+ + S Sbjct: 90 GVAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAITS 140 >gi|6002059|emb|CAA58937.1| ribosomal protein S4 [Laurus nobilis] Length = 196 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 29 GSDLRNQSRFGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + + + A Sbjct: 88 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRVVDIPSYRCKPRDIITARDEQRSRAL 147 Query: 153 V 153 + Sbjct: 148 I 148 >gi|219973462|gb|ACL68617.1| ribosomal protein small subunit 4 [Marsilea deflexa] Length = 188 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 18 QSTSKKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 77 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 136 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 137 ESSRSNE--IPDHLSLS 151 >gi|166836604|gb|ABY90534.1| ribosomal protein small subunit 4 [Pilularia americana] gi|166836610|gb|ABY90537.1| ribosomal protein small subunit 4 [Pilularia americana] Length = 200 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 38/199 (19%) Query: 34 PGLHGQRRKSKP-------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL G+ K K S F ++L AKQ+++ YG ++E++ + A ++ Sbjct: 12 PGLTGKASKQKKTRVAADQPTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIARKT 70 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD +V+ PTI AARQ VNHRH+LVN R V++ SYRC+ D+ Sbjct: 71 KGSTGQVLLQLLEMRLDNVVFNLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDI 130 Query: 141 IEVKQKSKQL----ASVLEASQLAERDVPEYISVN---------HDNMVATFVRIPSSLK 187 I V+ + + E+S+ ++P ++S++ N VA I ++ Sbjct: 131 ITVRNRPTSYNVLKGGIFESSR--SNEIPNHLSLSILEGNKPKGLVNQVANRESIDLNIN 188 Query: 188 DVPYPVIMQPNLVVEFYSR 206 ++ LVVE+YSR Sbjct: 189 EL---------LVVEYYSR 198 >gi|145848879|emb|CAJ91116.1| ribosomal protein S4 [Acrocladium auriculatum] Length = 188 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K K A + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNKRKSEAIISKNIEFYQKS 145 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 186 >gi|125662680|gb|ABN50290.1| small ribosomal protein 4 [Calocedrus macrolepis] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 21 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 79 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K ++ Sbjct: 80 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNRMKK 139 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 140 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKRIDNKRIGLKI--NELLVVEYYSR 192 >gi|118627534|emb|CAL39400.1| small ribosomal protein 4 [Jungermannia exsertifolia] Length = 202 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 137 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L E +P +++ + + + I ++ + + LV Sbjct: 138 TVKNKQKSQSIITKNINLFQESKIPSHLTFDSTKLQGS---INQTINREWINLKVNELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|37992407|gb|AAR06382.1| small ribosomal protein 4 [Actinodontium sprucei] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNKKKSEAIISKNIEFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 192 >gi|32892144|gb|AAP89011.1| ribosomal protein S4 [Passiflora alata] Length = 183 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + ++ +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SFDSFSQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|32892100|gb|AAP88989.1| ribosomal protein S4 [Passiflora actinia] Length = 183 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-VTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|293612012|gb|ADE48450.1| ribosomal protein 4 [Macrozamia moorei] Length = 179 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 18 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I YRCK DVI V+ + K A + + L+++D Sbjct: 77 GMAPTIPGARQLVNHRHILVNDRVVDIPGYRCKPRDVITVRDQQKSRAMIEKNIDLSQKD 136 Query: 164 VPEYISVNHDNMVAT-FVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 NH + ++ + + + + D + + + LVVE+YSR Sbjct: 137 QMS----NHLTLHSSRYKGLVNQIIDSKWISLKINELLVVEYYSR 177 >gi|32401902|gb|AAP80939.1| small ribosomal protein 4 [Hesperocyparis macrocarpa] Length = 190 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 17 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 75 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K V + Sbjct: 76 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIVKK 135 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 136 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 188 >gi|18028030|gb|AAL55939.1| ribosomal protein S4 [Jamesonia bogotensis] Length = 191 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSLDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + ++ + + +P++ +S++ D A V +S + + + Sbjct: 123 DIITIRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESIDLEI--N 179 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 180 ELFVVEFYSR 189 >gi|14090430|gb|AAK53500.1| small ribosomal protein 4 [Syrrhopodon tortilis] Length = 182 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + ++ Sbjct: 80 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFFSKH 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 140 KTPNHLIFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|25986661|gb|AAN52767.1| ribosomal protein small subunit 4 [Selliguea feei] Length = 191 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 29 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + ++ ++ Sbjct: 88 GLASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNALRNKFTGGDK- 146 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN V ++ + V + LVVE+YSR Sbjct: 147 TPDHLTISLSEDNKPTGLVNCVANRESVNLNI--NELLVVEYYSR 189 >gi|145848881|emb|CAJ91117.1| ribosomal protein S4 [Acrocladium auriculatum] Length = 188 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K K A + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNKRKSEAIISKNIEFYQKS 145 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 186 >gi|77862527|gb|ABB04536.1| small ribosomal protein 4 [Dumortiera hirsuta] Length = 201 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 101/187 (54%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMTSTIPGARQLVNHRHILINNNTVDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNL 199 +K +SK + + + + ++ +P +++ + + I + + D + + + L Sbjct: 137 TIKDRSKSQSIITKNLNSFQKQKIPNHLAFD----LMQIKGIVNQIIDREWISLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|22854723|gb|AAN09781.1| small ribosomal protein 4 [Leucoloma zeyheri] Length = 191 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R VNI SYRCK D I +K +++ + +++ Sbjct: 89 GIASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 189 >gi|12642258|gb|AAK00211.1| rps4 [Splachnum sphaericum] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 151 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLIYNSLKKQGLVNQILDRQSIGLK-------INELLVVEYYSR 192 >gi|32892136|gb|AAP89007.1| ribosomal protein S4 [Passiflora gabrielliana] gi|91795199|gb|ABE60880.1| ribosomal protein S4 [Passiflora cerasina] Length = 183 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSTFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|6002039|emb|CAA58927.1| ribosomal protein S4 [Costus lucanusianus] Length = 196 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGV-LPGLTSKRPRS-------GSDLKNQLHSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 NHRH+LVNGR V+I SYRCK D+I K K + A + L ++P++++ + Sbjct: 112 NHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIALCPHEELPKHLTFD 167 >gi|59803309|gb|AAX07763.1| Rps4 [Pallavicinia lyellii] Length = 201 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L K K++ +YG ++E+ + A R++G T L+ LE RLD I++R Sbjct: 40 KISXYRIRLEEKXKLRFHYG-LTERHLVKYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ER 162 PTI +ARQ VNHRH+L+N +VNI SY C+ D+I +K + + + + + L+ E+ Sbjct: 99 GMAPTIPSARQLVNHRHILINAYTVNIPSYNCETRDIITIKNRHESQSLITKNMNLSREQ 158 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + RI LK + LVVE+YSR Sbjct: 159 RIPNHLTFDLTRFRGSVNRITDREWIGLK-------INELLVVEYYSR 199 >gi|47606924|gb|AAT36382.1| ribosomal protein subunit 4 [Hymenodontopsis bifaria] Length = 195 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITMKDRQKYQAIISKNIDFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 193 >gi|40204825|emb|CAF02174.1| ribosomal protein small subunit 4 [Andreaea rupestris] Length = 188 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 27 KMSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+L+N R VNI SYRCK D I +K + K A + + +++ Sbjct: 86 GMASTIPEARQLVNHRHILINDRIVNIPSYRCKPQDFITIKDRQKSQAIITKNIDCSQKY 145 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ ++ + R LK + LVVE+YSR Sbjct: 146 KIPNHLIFNSLQKKGLINQIIDRESIGLK-------INELLVVEYYSR 186 >gi|293634003|gb|ADE60381.1| ribosomal protein subunit 4 [Notoligotrichum sp. Hedderson 14147] Length = 182 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V H+H+LVN R VNI SYRCK D I +K + + + + +++ Sbjct: 80 GMAPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQTIIAKNIDFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 180 >gi|166836614|gb|ABY90539.1| ribosomal protein small subunit 4 [Pilularia minuta] Length = 200 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 38/199 (19%) Query: 34 PGLHGQRRKSKP-------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL G+ K K S F ++L AKQ+++ YG ++E++ + A ++ Sbjct: 12 PGLTGKASKQKKTRVAADQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIARKT 70 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD +V+ PTI AARQ VNHRH+LVN R V++ SYRC+ D+ Sbjct: 71 KGSTGQVLLQLLEMRLDNVVFNLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDI 130 Query: 141 IEVKQKSKQL----ASVLEASQLAERDVPEYISVN---------HDNMVATFVRIPSSLK 187 I V+ + + E+S ++P ++S++ N VA I ++ Sbjct: 131 ITVRNRPTSYNVLKGGIFESS--GSNEIPNHLSLSILEGNKPKGLVNQVANRESIDLNIN 188 Query: 188 DVPYPVIMQPNLVVEFYSR 206 ++ LVVE+YSR Sbjct: 189 EL---------LVVEYYSR 198 >gi|17025843|gb|AAL32087.1| ribosomal protein 4 [Mitthyridium sp. Wall 3673] Length = 195 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 93 GLAPTIPGARQLVNHRHILVNNNMVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N V + L + + LVVE+YSR Sbjct: 153 KTPTHLTF---NFVEKKGLVNQILDQESIGLKINELLVVEYYSR 193 >gi|67035634|gb|AAY62748.1| small ribosomal protein subunit 4 [Leucoloma sprengelianum] Length = 198 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R VNI SYRCK D I +K +++ + +++ Sbjct: 96 GIASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 156 KVPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|66866225|gb|AAY57783.1| small ribosomal protein 4 [Meesia triquetra] Length = 206 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 99 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAII 148 >gi|52788813|gb|AAU87380.1| ribosomal protein small subunit 4 [Pilularia globulifera] Length = 196 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 38/199 (19%) Query: 34 PGLHGQRRKSKP-------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL G+ K K S F ++L AKQ+++ YG ++E++ + A ++ Sbjct: 8 PGLTGKASKQKKTRVAAEQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIARKT 66 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD +V+ PTI AARQ VNHRH+LVN R V++ SYRC+ D+ Sbjct: 67 KGSTGQVLLQLLEMRLDNVVFNLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDI 126 Query: 141 IEVKQKSKQL----ASVLEASQLAERDVPEYISVN---------HDNMVATFVRIPSSLK 187 I V+ + + E+S+ ++P ++S++ N VA I ++ Sbjct: 127 ITVRNRPTSYNVLKGGIFESSR--SNEIPNHLSLSILEGNKPKGLVNQVANRESIDLNIN 184 Query: 188 DVPYPVIMQPNLVVEFYSR 206 ++ LVVE+YSR Sbjct: 185 EL---------LVVEYYSR 194 >gi|24473802|gb|AAL82744.1| small ribosomal subunit protein 4 [Leptostomum inclinans] Length = 185 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 83 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 143 KTPNHLTYNSLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|78369635|gb|ABB43047.1| ribosomal protein 4 [Calymperes lonchophyllum] Length = 198 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 VPTI ARQ VNHRH+LVN VNI SY+CK D I +K K +++ + + Sbjct: 96 GIVPTIPGARQLVNHRHILVNNCIVNIPSYQCKPEDCITIKDPQKYQTMIVKNINFSPKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPSHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|63191699|gb|AAY34811.1| small ribosomal protein subunit 4 [Leptostomum inclinans] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 152 KTPNHLTYNSLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|157689450|gb|ABV65281.1| ribosomal protein S4 [Connarus conchocarpus] Length = 195 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 111/202 (54%), Gaps = 23/202 (11%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K P+ G Q R K S + ++L KQK++ +YG ++E++ Sbjct: 7 RRLGALPGLTSKRPIA----GNDFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLK 61 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI ARQ V HRH+LVNGR V+I S Sbjct: 62 YVRIAGKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVYHRHILVNGRRVDIPS 121 Query: 133 YRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYIS---VNHDNMVATFVRIPSSL 186 YRCK D+I + QKS+ L + L++S A ++P++++ + + +V + Sbjct: 122 YRCKPRDIITARDEQKSRALIQNYLDSS--AHEELPKHLTLYPLQYKGLVNQII------ 173 Query: 187 KDVPYPVIMQPN--LVVEFYSR 206 D + V ++ N LVVE+YSR Sbjct: 174 -DSKW-VGLKINELLVVEYYSR 193 >gi|140083431|gb|ABO84827.1| ribosomal protein S4 [Bartramia halleriana] Length = 202 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKYKIPNHLTYNSLENKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|32401820|gb|AAP80898.1| small ribosomal protein 4 [Eucalyptus globulus] Length = 184 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 98/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 12 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 70 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + QKS+ + Sbjct: 71 EMRLDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPRDIITARDDQKSRAM 130 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E +VP++++++ +I S K + + LVVE+YSR Sbjct: 131 IQNYFDSSPPE-EVPKHLTLHPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 182 >gi|14090504|gb|AAK53537.1| small ribosomal protein 4 [Mitthyridium undulatum] Length = 183 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 81 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 137 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 138 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 181 >gi|305672331|gb|ADM63589.1| ribosomal protein S4 [Myodocarpus crassifolius] Length = 173 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I K +Q + Sbjct: 79 EMRLDNILFRLGMATTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITA--KDEQNSR 136 Query: 153 VLEASQL---AERDVPEYISVN 171 VL + L + ++P++++++ Sbjct: 137 VLIQNSLDSSSHEELPKHLTLH 158 >gi|121761884|gb|ABM65027.1| ribosomal protein S4 [Plagiomnium tezukae] Length = 195 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|108861124|gb|ABG21434.1| ribosomal protein small subunit 4 [Pilularia americana] gi|166836606|gb|ABY90535.1| ribosomal protein small subunit 4 [Pilularia americana] gi|166836608|gb|ABY90536.1| ribosomal protein small subunit 4 [Pilularia americana] gi|166836616|gb|ABY90540.1| ribosomal protein small subunit 4 [Pilularia novae-hollandiae] gi|166836618|gb|ABY90541.1| ribosomal protein small subunit 4 [Pilularia novae-zelandiae] Length = 200 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 38/199 (19%) Query: 34 PGLHGQRRKSKP-------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL G+ K K S F ++L AKQ+++ YG ++E++ + A ++ Sbjct: 12 PGLTGKASKQKKTRVAADQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIARKT 70 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD +V+ PTI AARQ VNHRH+LVN R V++ SYRC+ D+ Sbjct: 71 KGSTGQVLLQLLEMRLDNVVFNLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDI 130 Query: 141 IEVKQKSKQL----ASVLEASQLAERDVPEYISVN---------HDNMVATFVRIPSSLK 187 I V+ + + E+S+ ++P ++S++ N VA I ++ Sbjct: 131 ITVRNRPTSYNVLKGGIFESSR--SNEIPNHLSLSILEGNKPKGLVNQVANRESIDLNIN 188 Query: 188 DVPYPVIMQPNLVVEFYSR 206 ++ LVVE+YSR Sbjct: 189 EL---------LVVEYYSR 198 >gi|37992693|gb|AAR06525.1| small ribosomal protein 4 [Stenodictyon wrightii] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K K K A + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDSIVDIPSYRCKPQDFITIKNKKKSEAIISKNIDFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N V I L + + LVVE+YSR Sbjct: 152 KIPNYLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 192 >gi|17025845|gb|AAL32088.1| ribosomal protein 4 [Mitthyridium sp. Wall 3653] Length = 199 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNMVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N V + L + + LVVE+YSR Sbjct: 157 KTPTHLTF---NFVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|15145858|gb|AAK83547.1| rps4 [Tayloria splachnoides] Length = 189 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMTPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRLKSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIDLKINELLVVEYYSR 187 >gi|47606886|gb|AAT36363.1| ribosomal protein subunit 4 [Calomnion brownseyi] Length = 199 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|151370784|gb|ABS11010.1| ribosomal protein subunit 4 [Dendro-hypnum milnei] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G L G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 RIIRRLGA-LLGLTNKTAQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 58 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASV 153 I SYRCK D I +K + K A + Sbjct: 118 IPSYRCKPQDFITIKDRQKSQAII 141 >gi|49182740|gb|AAT57832.1| small ribosomal protein [Lepicolea ochroleuca] Length = 195 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKPKSSYIDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 131 TIRNKQKSQSIITKNINLFQNLKIPSHLTFDSTKLCGS---ITQTINREWITLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37683562|gb|AAQ98832.1| small ribosomal protein 4 [Pogonatum proliferum] Length = 188 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 P+I ARQ VNH+H+L+N VNI SYRCK D I +K + K A + + +++ Sbjct: 86 GMAPSIPGARQLVNHKHILINDYIVNIPSYRCKPQDFITIKNRQKSQAIIAKNIDFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQI---LNRESIDLKINELLVVEYYSR 186 >gi|32423695|gb|AAP81238.1| ribosomal protein S4 [Candidatus Portiera aleyrodidarum] Length = 203 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSYGPGLHGQRRK--SKPSYFGLQLRAKQK 57 M++ K K+ RR G +L+ + + + + GQ +K ++ + +G QLR KQK Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGMVSIEEKCKIDKIPGQNKKHRTRITEYGKQLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + EK+F++ +K+A +++G L+ LESRLD IVYR F T ARQ VN Sbjct: 61 VRRIYG-VLEKQFKNYYKKAAKNKGAKGEYLLQSLESRLDNIVYRMGFSVTRAEARQLVN 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H+ + VNGR VNI SY+ GD I ++ KS + A +A + +++ V+ M Sbjct: 120 HKTIKVNGRIVNISSYKVTVGDCISIRAKSMNQTRIKNALAIANK--VKWVHVDEKKMEG 177 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PS + + L+VE YS+ Sbjct: 178 IVKYLPSKI-----STDINEKLIVELYSK 201 >gi|7576633|gb|AAF63929.1| ribosomal protein system 4 [Lepidopilum scabrisetum] Length = 167 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 7 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 65 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 66 GMAPTIPGARQLVNHRHIVVNDSIVDIPSYRCKPQDFITIKNQQKSKAIISKNIEFYQKI 125 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N V I L + + LVVE+YSR Sbjct: 126 KIPNYLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 166 >gi|78369641|gb|ABB43050.1| ribosomal protein 4 [Calymperes erosum] Length = 198 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+L+N R VNI SY+CK D I +K + K Q V + + Sbjct: 96 GIAPTIPGARQLVNHRHILINNRIVNIPSYQCKPQDFITLKDQQKYQTMIVKNINVYPKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPSHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|118627498|emb|CAL39383.1| small ribosomal protein 4 [Lophozia sudetica] gi|118627542|emb|CAL39404.1| small ribosomal protein 4 [Protolophozia debiliformis] Length = 202 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + ++ + + LV Sbjct: 138 TIRNKRKSQSIITQNINLFQKLKIPSHLTFELAQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|6002071|emb|CAA58943.1| ribosomal protein S4 [Oncidium ansiferum] Length = 196 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 6/172 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G +RS L Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKIPRSRS---DLQTQLHSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN 171 +LVNGR V+I SYRCK D+I K K + A + + R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKARDIITTKDKERSKALIQNYLVSSPRGELPNHLTID 167 >gi|17154588|emb|CAC83975.1| ribosomal protein S4 [Savannosiphon euryphyllus] Length = 175 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 14 GCDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGQILLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNGR +I SY CK D+I KQ+SK L Sbjct: 73 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIGDIPSYCCKPRDIITTKNKQRSKAL 132 Query: 151 ASVLEASQLAERDVPEYISVN 171 S + ++P +++++ Sbjct: 133 IQNFIFSSPHQEELPNHLTID 153 >gi|17025820|gb|AAL32077.1| ribosomal protein 4 [Syrrhopodon ciliatus] Length = 194 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K Q V + ++ Sbjct: 92 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTTFFSKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ N +I L + + LVVE+YSR Sbjct: 152 KTPKHLLFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|37683564|gb|AAQ98833.1| small ribosomal protein 4 [Pogonatum neglectum] Length = 177 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNILFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 75 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 135 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 175 >gi|63191741|gb|AAY34830.1| small ribosomal protein subunit 4 [Calomnion complanatum] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 98 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 198 >gi|14090450|gb|AAK53510.1| small ribosomal protein 4 [Octoblepharum albidum] Length = 182 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-LTEQQLLNYMRVARKTKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHR++LVN VNI SYRCK DVI +K + +++ + ++ Sbjct: 80 GMAPTIPAARQLVNHRYILVNNCIVNIPSYRCKPHDVITIKDRQSSQKMIVKNVEFFQKY 139 Query: 163 DVPEYISVN 171 +P ++S N Sbjct: 140 KIPNHLSFN 148 >gi|7576655|gb|AAF63940.1| ribosomal protein system 4 [Hypopterygium tamarisci] Length = 189 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 88 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 147 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQILNRESIGLK-------INELLVVEYYSR 188 >gi|63191718|gb|AAY34819.1| small ribosomal protein subunit 4 [Epipterygium wrightii] Length = 192 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + Sbjct: 90 GMAPTISGARQLVNHRHILVNDRLVDIPSYRCKPQDFIIIKDRQKSQTMISKKIDFYQNY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTYNFLTKKGLVKQI---LDRESIDLKINELLVVEYYSR 190 >gi|222103488|gb|ACM44273.1| small ribosomal protein subunit 4 [Polytrichum sphaerothecium] Length = 196 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + + +++ Sbjct: 94 GMAPTIPGARQLVNHKHILVNDCIVNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKY 153 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 154 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 194 >gi|118627536|emb|CAL39401.1| small ribosomal protein 4 [Tetralophozia setiformis] Length = 202 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNINLFXKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|3098194|gb|AAC15545.1| small ribosomal protein 4 [Orthodontium lineare] Length = 197 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 95 GMAPTIPGARQLVNHKHILVNDRIVDIPSYRCKPQDFITIKDQQKSQAIIDKNLDFYQKS 154 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|328541126|gb|AEB21787.1| ribosomal protein S4 [Paracromastigum drucei] Length = 199 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTGKTLKSKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHIAINNNIVDIPSYNCQPGDTI 134 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSQSIITKNINLFQDLKIPSHLTFDSRKLCGS---INQTINREWIDLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|108861084|gb|ABG21414.1| ribosomal protein small subunit 4 [Marsilea gibba] Length = 199 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 10 KIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 KI RR+ L G+ +P +R Q K S + ++L AKQ+++ YG ++E Sbjct: 2 KILRRLKSLPGLTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R Sbjct: 57 RQLLRYVRIARKTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 V++ SYRC+ D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 VDVPSYRCEPQDIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 162 >gi|49182700|gb|AAT57812.1| small ribosomal protein [Diplophyllum albicans] Length = 195 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTFKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNNTVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 131 TIRNKQKSQSIITKNLNLFQKLKIPNHLTFDLTQLQGSVNQMVNREWVNLK-------IN 183 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 184 ELLVVEYYSR 193 >gi|42556442|gb|AAS19816.1| small ribosomal protein 4 [Lepicolea ochroleuca] Length = 191 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQNLKIPSHLTFDSTKLCGS---ITQTINREWITLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|17025834|gb|AAL32083.1| ribosomal protein 4 [Mitthyridium sp. Orban 1995] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 98 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 158 KTPTHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 198 >gi|63191787|gb|AAY34853.1| small ribosomal protein subunit 4 [Lyellia crispa] Length = 188 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I+++ Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIIFQL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIAKNIDFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEQKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|32892110|gb|AAP88994.1| ribosomal protein S4 [Passiflora incarnata] Length = 183 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 18/187 (9%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P++++++ +I S V +Q N L Sbjct: 121 KDEQKSKDMIQN-SLHSFPQEKLPKHLTLHPFQYKGLVNQIIDSTW-----VGLQINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|32892080|gb|AAP88979.1| ribosomal protein S4 [Passiflora foetida] gi|32892084|gb|AAP88981.1| ribosomal protein S4 [Passiflora speciosa] gi|32892118|gb|AAP88998.1| ribosomal protein S4 [Passiflora recurva] gi|32892140|gb|AAP89009.1| ribosomal protein S4 [Passiflora maliformis] gi|74273153|gb|ABA01276.1| ribosomal protein S4 [Passiflora coccinea] gi|74273155|gb|ABA01277.1| ribosomal protein S4 [Passiflora vitifolia] gi|74273159|gb|ABA01279.1| ribosomal protein S4 [Passiflora palmeri] gi|74273161|gb|ABA01280.1| ribosomal protein S4 [Passiflora antioquiensis] gi|74273165|gb|ABA01282.1| ribosomal protein S4 [Passiflora manicata] gi|74273171|gb|ABA01285.1| ribosomal protein S4 [Passiflora ambigua] gi|74273189|gb|ABA01294.1| ribosomal protein S4 [Passiflora riparia] gi|74273193|gb|ABA01296.1| ribosomal protein S4 [Passiflora serratodigitata] gi|74273197|gb|ABA01298.1| ribosomal protein S4 [Passiflora trintae] gi|74273211|gb|ABA01305.1| ribosomal protein S4 [Passiflora mixta] gi|74273213|gb|ABA01306.1| ribosomal protein S4 [Passiflora tripartita] gi|74273215|gb|ABA01307.1| ribosomal protein S4 [Passiflora trifoliata] gi|74273217|gb|ABA01308.1| ribosomal protein S4 [Passiflora luetzelburgii] gi|89031436|gb|ABD59455.1| Rps4 [Passiflora incarnata] gi|89031438|gb|ABD59456.1| Rps4 [Passiflora cincinnata x Passiflora incarnata] gi|89031440|gb|ABD59457.1| Rps4 [Passiflora cincinnata] gi|89031442|gb|ABD59458.1| Rps4 [Passiflora foetida x Passiflora palmeri] gi|89031444|gb|ABD59459.1| Rps4 [Passiflora foetida] gi|91795201|gb|ABE60881.1| ribosomal protein S4 [Passiflora hatschbachii] Length = 183 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|17025864|gb|AAL32097.1| ribosomal protein 4 [Mitthyridium sp. Wall 2620] Length = 201 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQILLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 99 GLAPTIPGARQLVNHRHILVNNSIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 155 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 156 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 199 >gi|307602233|gb|ADN67998.1| ribosomal protein S4 [Cupressus cashmeriana] gi|307602235|gb|ADN67999.1| ribosomal protein S4 [Cupressus chengiana] gi|307602241|gb|ADN68002.1| ribosomal protein S4 [Cupressus gigantea] gi|307602243|gb|ADN68003.1| ribosomal protein S4 [Cupressus jiangeensis] gi|307602247|gb|ADN68005.1| ribosomal protein S4 [Cupressus torulosa] Length = 189 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K V + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIVKK 134 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|118627524|emb|CAL39396.1| small ribosomal protein 4 [Crossocalyx hellerianus] Length = 202 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K + + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVRNKQESQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|15145834|gb|AAK83535.1| rps4 [Voitia hyperborea] Length = 189 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R V+I SYRCK D I +K + K A + + + + Sbjct: 87 GMAPTIPGARQLINHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFFXKY 146 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTYN 155 >gi|29422409|gb|AAO84600.1| small ribosomal protein 4 [Breutelia tomentosa] Length = 184 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGGVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQKKSQAIISKNIEFYQKY 155 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 156 KIPAHLTYN 164 >gi|78369627|gb|ABB43043.1| ribosomal protein 4 [Calymperes robinsonii] Length = 199 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+L+N R VNI SY+CK D I +K + K Q V + + Sbjct: 97 GIAPTIPGARQLVNHRHILINNRIVNIPSYQCKPQDFITLKDQQKYQTMIVKNINVYPKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPSHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|74273185|gb|ABA01292.1| ribosomal protein S4 [Passiflora nitida] Length = 183 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|74273111|gb|ABA01255.1| ribosomal protein S4 [Passiflora racemosa] Length = 183 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRLVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|290467489|gb|ADD25862.1| small ribosomal protein 4 [Hymenophyllum wilsonii] Length = 187 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E ++R Sbjct: 82 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSQRK 141 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 142 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 185 >gi|222103432|gb|ACM44245.1| small ribosomal protein subunit 4 [Polytrichum sphaerothecium] Length = 203 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + + +++ Sbjct: 101 GMAPTIPGARQLVNHKHILVNDCIVNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKY 160 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 161 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 201 >gi|157689494|gb|ABV65303.1| ribosomal protein S4 [Hymenanthera alpina] Length = 169 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQ+++ +YG I+E++ + + A R++G T L LE RLD I++R Sbjct: 1 KKSQYRIRLEEKQRLRLHYG-ITERQLLTYVRIAARAKGSTGQVLRQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 TI ARQ VNHRH+LVNGR V+I +YRCK D+I VK K K A + Sbjct: 60 GMASTIPRARQLVNHRHILVNGRIVDIPNYRCKPRDIITVKDKKKSRAMI 109 >gi|99640372|emb|CAJ45118.1| putative ribosomal protein S4 gene [Pilularia globulifera] gi|108861126|gb|ABG21435.1| ribosomal protein small subunit 4 [Pilularia globulifera] gi|166836612|gb|ABY90538.1| ribosomal protein small subunit 4 [Pilularia globulifera] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 38/199 (19%) Query: 34 PGLHGQRRKSKP-------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL G+ K K S F ++L AKQ+++ YG ++E++ + A ++ Sbjct: 12 PGLTGKASKQKKTRVAAEQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIARKT 70 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD +V+ PTI AARQ VNHRH+LVN R V++ SYRC+ D+ Sbjct: 71 KGSTGQVLLQLLEMRLDNVVFNLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDI 130 Query: 141 IEVKQKSKQL----ASVLEASQLAERDVPEYISVN---------HDNMVATFVRIPSSLK 187 I V+ + + E+S+ ++P ++S++ N VA I ++ Sbjct: 131 ITVRNRPTSYNVLKGGIFESSR--SNEIPNHLSLSILEGNKPKGLVNQVANRESIDLNIN 188 Query: 188 DVPYPVIMQPNLVVEFYSR 206 ++ LVVE+YSR Sbjct: 189 EL---------LVVEYYSR 198 >gi|12330486|gb|AAG52780.1| ribosomal protein 4 [Voitia hyperborea] Length = 188 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R V+I SYRCK D I +K + K A + + + + Sbjct: 86 GMAPTIPGARQLINHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFFXKY 145 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 146 KIPNHLTYN 154 >gi|218157217|gb|ACK58425.1| ribosomal protein subunit 4 [Lyellia crispa] Length = 186 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ LE RLD I+++ Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIIFQL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + K A + + ++ Sbjct: 84 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAIIAKNIDFYQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTFNSLEQKGLVNQI---LDRESIGLKINELLVVEYYSR 184 >gi|17025830|gb|AAL32082.1| ribosomal protein 4 [Mitthyridium sp. Wall 1086] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 98 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 158 KTPTHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 198 >gi|29027240|gb|AAN47182.1| small ribosomal protein 4 [Hymenodontopsis bifaria] Length = 194 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITMKDRQKYQAIISKNIDFYQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 192 >gi|108802645|ref|YP_636301.1| ribosomal protein S4 [Eucalyptus globulus subsp. globulus] gi|309322451|ref|YP_003933964.1| ribosomal protein S4 [Eucalyptus grandis] gi|90101659|sp|Q49KZ6|RR4_EUCGG RecName: Full=30S ribosomal protein S4, chloroplastic gi|60460811|gb|AAX21031.1| ribosomal protein S4 [Eucalyptus globulus subsp. globulus] gi|308223285|gb|ADO23593.1| ribosomal protein S4 [Eucalyptus grandis] Length = 201 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNG V+I SYRCK D+I + QKS+ + S E +VP++++++ Sbjct: 116 ILVNGCIVDIPSYRCKPRDIITARDDQKSRAMIQNYFDSSPHE-EVPKHLTLHPFQYKGL 174 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 175 VNQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|11467040|ref|NP_041947.1| ribosomal protein S4 [Euglena gracilis] gi|133953|sp|P27418|RR4_EUGGR RecName: Full=30S ribosomal protein S4, chloroplastic gi|336889|gb|AAA84230.1| ribosomal protein S4 [Euglena gracilis] gi|415790|emb|CAA50134.1| 30S ribosomal protein S4 [Euglena gracilis] gi|228205|prf||1718312A ribosomal protein S4 Length = 205 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 118/209 (56%), Gaps = 9/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RRIG+ K+ +S G +RK K S + ++L+ KQK++ Sbjct: 1 MSRYRGPRLRIVRRIGKLPSLTNKTSKKRKSPGQPATSFKRKKKISKYNIRLKEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++ + K++ + +G + L++FLE RLD IV+R F PTI AA+Q +NH H Sbjct: 61 NYG-ITERQLLNYVKKSRKKKGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVA 177 + V+ + +NI S+ C+ +I+ K+ + + +E+ +L +P ++S+N N+ A Sbjct: 120 ICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKELLL--IPPHLSLNKKNLEA 177 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +I+ LV+EFYSR Sbjct: 178 KIIGL---INRKAISLIVNELLVIEFYSR 203 >gi|289599897|gb|ADD12899.1| ribosomal protein S4 [Hibbertia banksii] Length = 167 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R TI ARQ VNHRH+LVN R ++I SYRCK D+I VK + K A + L+ Sbjct: 60 ILFRLGMASTIPGARQLVNHRHILVNDRILDIPSYRCKPRDIITVKDEHKSRALIQNYLD 119 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S ++P++++++ +I S K + + LVVE+YSR Sbjct: 120 SS--PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 165 >gi|289576420|dbj|BAI77784.1| ribosomal protein small subunit 4 [Hymenophyllum frankliniae] Length = 190 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 26 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + ++R Sbjct: 85 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIEFSQRK 144 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN V ++ + + + LVVE+YSR Sbjct: 145 KIPDHLTFSFSEDNRPKGLVNGIANRESIDLNI--NELLVVEYYSR 188 >gi|108861068|gb|ABG21406.1| ribosomal protein small subunit 4 [Marsilea capensis] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 10 KIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 KI RR+ L G+ +P +R Q K S + ++L AKQ+++ YG ++E Sbjct: 3 KILRRLKSLPGLTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R Sbjct: 58 RQLLRYVRIARKTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRI 117 Query: 128 VNIGSYRCKEGDVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 V++ SYRC+ D+I V+ + V E+S+ E +P+++S++ Sbjct: 118 VDVPSYRCEPQDIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|32892104|gb|AAP88991.1| ribosomal protein S4 [Passiflora edmundoi] Length = 183 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + S Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQNYLDS- 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|197131482|gb|ACH47259.1| ribosomal protein S4 [Geranium carolinianum] Length = 204 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 98/172 (56%), Gaps = 10/172 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+GE L G + TR R+K + +Y+ L KQ+++ Sbjct: 1 MSRYRGPRFKKIRRLGE-LPG-----LTTRIPKDKTQPFRKKREKNYYQSCLHEKQRIRF 54 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 55 HYG-LTERQLLQYVRIAVKAKGITGQVLLQLLEMRLDNTLFRLGMASTIPQARQLVNHRH 113 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYIS 169 +LVNGR V+I SYRCK D+I ++K K + + LE+S ++ +P++++ Sbjct: 114 ILVNGRMVDIPSYRCKPRDIITAREKEKSRTLIQNYLESSLRKKKKLPDHLT 165 >gi|17154633|emb|CAC83930.1| ribosomal protein S4 [Ixiolirion tataricum] Length = 184 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + L+L KQK++ +YG +++++ A +++G TS L+ LE RLD I++R Sbjct: 33 KKSEYHLRLEEKQKVRFHYG-LTDRQLLRYVHIAGKAKGSTSQVLLQLLEMRLDNILFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K + A + + +S Sbjct: 92 GMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNHIASSPHK 151 Query: 161 ERDVPEYISVN 171 ++ +P +++++ Sbjct: 152 KKKLPVHLTID 162 >gi|17025862|gb|AAL32096.1| ribosomal protein 4 [Mitthyridium sp. Wall 3859] Length = 199 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNSIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 153 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 154 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 197 >gi|118626013|emb|CAL39324.1| small ribosomal protein 4 [Diplophyllum albicans] Length = 202 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTFKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNNTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 138 TIRNKQKSQSIITKNLNLFQKLKIPNHLTFDLTQLQGSVNQMVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|42405302|gb|AAS13477.1| rps4 small ribosomal protein [Hypopterygium tamarisci] gi|157785986|gb|ABV74167.1| small ribosomal protein 4 [Hypopterygium discolor] Length = 194 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILNRESIGLK-------INELLVVEYYSR 192 >gi|17025869|gb|AAL32099.1| ribosomal protein 4 [Mitthyridium sp. Orban 1995] Length = 190 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 88 GLAPTIPGARQLVNHRHILVNNSIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 144 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 145 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 188 >gi|307602239|gb|ADN68001.1| ribosomal protein S4 [Cupressus funebris] Length = 189 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K V + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIVKK 134 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|293634109|gb|ADE60434.1| ribosomal protein subunit 4 [Polytrichastrum sphaerothecium] Length = 174 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 13 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + + +++ Sbjct: 72 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKY 131 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 132 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 172 >gi|66866245|gb|AAY57791.1| small ribosomal protein 4 [Rhacocarpus purpurascens] Length = 200 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+L+N R V+I SYRCK D I VK + K A + D Sbjct: 93 GMAPTIPGARQLVNHRHILINDRIVDIPSYRCKPQDFITVKDRQKSQAIIXXXXXXKNID 152 Query: 164 ------VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 FYQKYKIPNHLTYNSLKKKGLVNQI---LDRELIGLKINELLVVEYYSR 198 >gi|289599929|gb|ADD12915.1| ribosomal protein S4 [Hibbertia microphylla] Length = 166 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 2 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIL 60 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 61 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 120 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 121 --PHEELPKHLTLHPFQYKGLINQIIDS-KGIGLKI--NELLVVEYYSR 164 >gi|188012809|gb|ACD45543.1| ribosomal protein S4 [Riella sp. SC s.n.] Length = 195 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINDNIVDIPSYNCKPKDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + + +P +++ + + F + + + D + + ++ N Sbjct: 131 TIKDRQKSQSIITKNVNSFQKPKIPNHLTFD----LIQFKGLVNQIIDREW-IYLKINEL 185 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 186 LVVEYYSR 193 >gi|17025812|gb|AAL32073.1| ribosomal protein 4 [Syrrhopodon armatus] Length = 198 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN +NI SY+CK D I +K + K +++ + + Sbjct: 96 GLAPTIPGARQLVNHRHILVNNHIINIPSYQCKPQDFITIKDQQKHQTMIVKNINFSPKH 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSVEKKGLVNQI---LDQEAIGLKINELLVVEYYSR 196 >gi|15145838|gb|AAK83537.1| rps4 [Tayloria grandis (D.G.Long) Goffinet & A.J.Shaw, 2002] Length = 189 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRLKSQALINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|67035763|gb|AAY62812.1| small ribosomal protein subunit 4 [Codonoblepharon menziesii] Length = 202 Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNHRIVDIASYRCKPQDFITIKNRQK 144 >gi|33413181|emb|CAD86727.1| ribosomal protein small subunit 4 [Fissidens fasciculatus] Length = 182 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K +++ +++ Sbjct: 80 GMTPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFITIKDQQKYQVMIIKNVNFSQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I + + + LVVE+YSR Sbjct: 140 KIPNHLTFNSLEKKGLVKQI---IDQESIGLKINELLVVEYYSR 180 >gi|293634051|gb|ADE60405.1| ribosomal protein subunit 4 [Pogonatum proliferum] Length = 187 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I K + + A + + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITTKNRQESQAIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|29027168|gb|AAN47146.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027170|gb|AAN47147.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027172|gb|AAN47148.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027176|gb|AAN47150.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027178|gb|AAN47151.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027180|gb|AAN47152.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027182|gb|AAN47153.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027184|gb|AAN47154.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027186|gb|AAN47155.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027188|gb|AAN47156.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027196|gb|AAN47160.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027198|gb|AAN47161.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027200|gb|AAN47162.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027202|gb|AAN47163.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 194 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAII 141 >gi|26399094|sp|P59136|RR4_CANTA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504379|emb|CAC80634.1| small ribosomal protein 4 [Canalohypopterygium tamariscinum] Length = 202 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTPQLKSS---PINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K A + + + +P ++ N + Sbjct: 117 ILVNGHIVDIPSYRCKPQDFITIKNQRKSQAIINKNMNFYRKYKIPNHLIYNSLDKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|171473924|gb|AAX24501.3| SJCHGC09636 protein [Schistosoma japonicum] Length = 139 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RR+ +L G K+ R + PG HG+ R + Y QL+ KQK + YG + EK+ Sbjct: 10 KKSRRLKTDLVGGDKN-FEMRPFPPGQHGRGRVQEKEYL-TQLQEKQKARFTYG-VMEKQ 66 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 F +KEA R +G T NL+ LESRLD++VYRA T ARQ V H H VNG+ V+ Sbjct: 67 FVRYYKEAARRQGKTGENLLVILESRLDSVVYRAGLARTRRGARQMVTHGHFEVNGKRVD 126 Query: 130 IGSYRCKEGDVI 141 + SYR ++ D+I Sbjct: 127 VPSYRVEQYDII 138 >gi|37683550|gb|AAQ98826.1| small ribosomal protein 4 [Pogonatum comosum] Length = 176 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + ++ Sbjct: 74 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQNY 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 134 KIPNHLTFNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 174 >gi|17025810|gb|AAL32072.1| ribosomal protein 4 [Syrrhopodon perarmatus] Length = 194 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 92 GLTPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTRIIKNTNFFPKH 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 152 KTPNHLIFNSREKRGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|14090420|gb|AAK53495.1| small ribosomal protein 4 [Mitthyridium obtusifolium] Length = 182 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQILLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNSIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFS--- 136 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 137 -PKHKTPNHLTFNSVEKKGLVNQILDQESIGLKINELLVVEYYSR 180 >gi|118625971|emb|CAL39307.1| small ribosomal protein 4 [Gymnocoleopsis multiflora] Length = 202 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSISNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVSIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+LVN V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGIAPTIPGARQLVNHRHILVNSNLVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 +K K K Sbjct: 138 TIKNKQK 144 >gi|32892088|gb|AAP88983.1| ribosomal protein S4 [Passiflora eichleriana] gi|74273173|gb|ABA01286.1| ribosomal protein S4 [Passiflora exura] Length = 183 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|12330464|gb|AAG52769.1| ribosomal protein 4 [Polytrichastrum pallidisetum] Length = 189 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG +E++ + + A R++G T L+ LE RLD ++R Sbjct: 28 KISXYRIRLEEKQKLRFHYGX-TERQLLNYVRIARRAKGSTGQILLQLLEMRLDNXIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|47606888|gb|AAT36364.1| ribosomal protein subunit 4 [Calomnion complanatum] Length = 195 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|197131490|gb|ACH47263.1| ribosomal protein S4 [Sarcocaulon vanderietiae] Length = 213 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 15/170 (8%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQ+++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 50 KKSQYRIRLEEKQRVRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNTLFRL 108 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 TI ARQ VNHRH+LVNGR V+I SYRCK D+I ++K K A + L+++ Sbjct: 109 GMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDIITAREKEKSRALIQNYLDSAPAP 168 Query: 161 ERDVPEYISV---NHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP +++ + +V + R LK + LVVE+YSR Sbjct: 169 RKAVPNHLTTYRRQYKGLVKQIIDRKKVGLK-------INEFLVVEYYSR 211 >gi|32892086|gb|AAP88982.1| ribosomal protein S4 [Passiflora caerulea] gi|32892092|gb|AAP88985.1| ribosomal protein S4 [Passiflora setulosa] gi|32892096|gb|AAP88987.1| ribosomal protein S4 [Passiflora tenuifila] gi|32892098|gb|AAP88988.1| ribosomal protein S4 [Passiflora urubiciensis] gi|32892130|gb|AAP89004.1| ribosomal protein S4 [Passiflora amethystina] gi|32892132|gb|AAP89005.1| ribosomal protein S4 [Passiflora campanulata] gi|32892134|gb|AAP89006.1| ribosomal protein S4 [Passiflora jilekii] gi|32892138|gb|AAP89008.1| ribosomal protein S4 [Passiflora garckei] gi|74273179|gb|ABA01289.1| ribosomal protein S4 [Passiflora kermesina] gi|74273181|gb|ABA01290.1| ribosomal protein S4 [Passiflora miersii] gi|74273195|gb|ABA01297.1| ribosomal protein S4 [Passiflora sprucei] gi|74273199|gb|ABA01299.1| ribosomal protein S4 [Passiflora watsoniana] gi|74273219|gb|ABA01309.1| ribosomal protein S4 [Passiflora mendoncaei] gi|90970052|gb|ABE02795.1| ribosomal protein S4 [Passiflora gibertii] gi|91795203|gb|ABE60882.1| ribosomal protein S4 [Passiflora loefgrenii] gi|91795205|gb|ABE60883.1| ribosomal protein S4 [Passiflora picturata] Length = 183 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|118626101|emb|CAL39352.1| small ribosomal protein 4 [Sphenolobopsis pearsonii] Length = 202 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNNTVDIPSYNCESGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQRSQSMITNNINLFQKSKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|42794627|gb|AAS45713.1| Rps4 [Anthopterus revolutus] Length = 211 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 11/164 (6%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L+ KQK++ +YG ++E++ + A +++G T L+ LE LD I++R TI Sbjct: 48 IRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMGLDNILFRLGMASTI 106 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAER 162 ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + + + Sbjct: 107 PGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKGKRK 166 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 167 RVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|33413261|emb|CAD86765.1| ribosomal protein small subunit 4 [Orthomniopsis dilatata] Length = 199 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLNKKGLVNQI---LDRNSIDLKINELLVVEYYSR 197 >gi|18027948|gb|AAL55898.1| ribosomal protein S4 [Anogramma guatemalensis] Length = 191 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L KQK++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSSSKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R TI AARQ VNHRH+LVN R VNI SYRCK D+I + +S +V++ Sbjct: 83 IVFRLGMASTIPAARQLVNHRHILVNHRIVNIPSYRCKPKDIITIPNRS-NFHNVMKDES 141 Query: 159 LAERDVPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+++++ + A V ++ + V + VVE+YSR Sbjct: 142 IGGDVIPDHLTLYFSKTGEAAGLVNHMANRESVDLDI--NELFVVEYYSR 189 >gi|63191704|gb|AAY34813.1| small ribosomal protein subunit 4 [Orthomnion elimbatum] Length = 200 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 158 KIPNHLTYNSLNKKGLVNQI---LDRNSIDLKINELLVVEYYSR 198 >gi|293634107|gb|ADE60433.1| ribosomal protein subunit 4 [Polytrichastrum sphaerothecium] Length = 185 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + + +++ Sbjct: 83 GMAPTIPGARQLVNHKHILVNDCIVNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKY 142 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 143 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 183 >gi|184128081|gb|ACC67940.1| ribosomal protein small subunit 4 [Helminthostachys zeylanica] Length = 170 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQK++ +G ++E++ + A R+ G T + LE RLD I++R Sbjct: 6 KISQYCIRLEAKQKLRFNHG-LTERQLLKYVRTARRASGSTGQVSLQLLEMRLDNIIFRL 64 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLASVLEASQLAE 161 PTI ARQ VNHRH+LVN R V+I SY CK DVI V+ + S+ L + AE Sbjct: 65 GISPTIPGARQLVNHRHILVNDRIVDIPSYHCKANDVITVRDQNNSRNLIGK-DVGSSAE 123 Query: 162 RDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + +S++ D+ + FV + + V L+VE+YSR Sbjct: 124 GRIPNHLSLSLSEDDKLKGFVNRMIDRESIGLKV--NELLIVEYYSR 168 >gi|118626071|emb|CAL39339.1| small ribosomal protein 4 [Anastrophyllum cavifolium] gi|118626167|emb|CAL39381.1| small ribosomal protein 4 [Barbilophozia atlantica] gi|118626169|emb|CAL39382.1| small ribosomal protein 4 [Barbilophozia atlantica] Length = 202 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNRHKSQSIITKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|77862543|gb|ABB04544.1| small ribosomal protein 4 [Monosolenium tenerum] Length = 201 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ YYG ++E++ A +++ Sbjct: 18 PGLTNKILKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFYYG-LTERQLLKYVGIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILINNNTVDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + V + + + +P ++S + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSQSIVKKNLNSFQKSKIPNHLSFDLMQVQGLVHQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|49182799|gb|AAT57861.1| small ribosomal protein [Sphaerocarpos texanus] Length = 192 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K+K Y ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 PGLTNKTLKTKSGYINQSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 68 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNTVDIPSYSCKPKDVI 127 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + + +P ++S + + F + + + D + ++ N Sbjct: 128 TIKDRQKSQSIITKNINSFQKPKIPNHLSFD----LIQFKGLVNQIIDRE-SIYLKINEL 182 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 183 LVVEYYSR 190 >gi|32892106|gb|AAP88992.1| ribosomal protein S4 [Passiflora edulis] Length = 183 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SLHSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|118625947|emb|CAL39295.1| small ribosomal protein 4 [Gymnocoleopsis multiflora] Length = 202 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVSIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+LVN V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGIAPTIPGARQLVNHRHILVNSNLVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 +K K K Sbjct: 138 TIKNKQK 144 >gi|46811056|gb|AAT01846.1| small ribosomal protein 4 [Symphyogyna hymenophyllum] Length = 197 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +RS Y L + K S + ++L KQK++ +YG ++ Sbjct: 3 RAKIIRRLGA-LPGLSHEMIGSRSGYTNQLAANK---KISQYRIRLEEKQKLRFHYG-LT 57 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN Sbjct: 58 ERQLLKYVRIARGAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVNDD 117 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSS 185 +V+I SY CK DVI ++ + + + + + L ER +P +++ + + +I Sbjct: 118 TVDIPSYNCKPQDVITIRDRRESQSVITKNINLFRERRIPNHLTFDSTRFCGSVNQI--- 174 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 175 IDREWIGLKINELLVVEYYSR 195 >gi|29027190|gb|AAN47157.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027192|gb|AAN47158.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027194|gb|AAN47159.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 194 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAII 141 >gi|51860473|gb|AAU11373.1| ribosomal protein small subunit 4 [Gnetum indicum] Length = 184 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 13 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 71 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ Sbjct: 72 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTII 131 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 132 TRNRNKARENKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 182 >gi|77862559|gb|ABB04552.1| small ribosomal protein 4 [Sauteria alpina] Length = 201 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKFGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNMVDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K++S + + + + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKERSNSQSIITKNLNSFQKQKIPNHLTFDLMQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|18027946|gb|AAL55897.1| ribosomal protein S4 [Pityrogramma austroamericana] Length = 191 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 17/188 (9%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLAGKNKMSNSGEFRIASDSSASKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T + LE RLD IV+R TI AARQ VNHRH+LVN R V+I SYRCK Sbjct: 63 KTRGSTGQVSLQLLEMRLDNIVFRLGMASTIPAARQLVNHRHILVNHRIVDIPSYRCKPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 D+I ++ + +V++ + +P++++++ T + + + Sbjct: 123 DLITIRNRPTS-RNVVKGESIGRDGIPDHLTLSFSKAGETAAVVNHMANRESVDLDINEL 181 Query: 199 LVVEFYSR 206 VVE+YSR Sbjct: 182 FVVEYYSR 189 >gi|289599927|gb|ADD12914.1| ribosomal protein S4 [Hibbertia hypericoides] Length = 167 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A + +G T L+ LE RLD Sbjct: 1 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKVKGSTGQVLLQLLEMRLDN 59 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L+ Sbjct: 60 ILFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLD 119 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S ++P++++++ +I S K + + LVVE+YSR Sbjct: 120 SS--PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 165 >gi|17025841|gb|AAL32086.1| ribosomal protein 4 [Mitthyridium sp. Wall 1043] Length = 195 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 93 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 153 KTPTHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 193 >gi|28194669|gb|AAO33596.1|AF480951_1 ribosomal protein S4 [Didymodon luridus] Length = 196 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R V+I SYRCK D I + + K + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFFQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLIFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 194 >gi|29027174|gb|AAN47149.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 188 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 86 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAII 135 >gi|289599860|gb|ADD12881.1| ribosomal protein S4 [Davilla flexuosa] gi|289599862|gb|ADD12882.1| ribosomal protein S4 [Davilla kunthii] gi|289599864|gb|ADD12883.1| ribosomal protein S4 [Davilla lacunosa] Length = 163 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN R VNI SYRCK D+I VK + K A + L++S Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPRDIITVKDEHKSRALIQNYLDSS-- 117 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 118 PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 161 >gi|118626083|emb|CAL39345.1| small ribosomal protein 4 [Pseudomarsupidium decipiens] Length = 202 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSK SY + Sbjct: 1 MSRYRGPRVKIIRRLGA---------------LPGLTSKTFKSKSSYVDRSTSNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTEQQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEY 167 I ARQ VNHRH+ VN V+I SY C+ G++I +K K K QL + +P + Sbjct: 105 IPGARQLVNHRHISVNNDMVDIPSYNCEPGNIITIKNKRKSQLIITKNINLFQNLKIPSH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++++ ++ FV + + V + LVVE+YSR Sbjct: 165 LTLDSIQLLG-FVNQTVNREWVNLKI--NELLVVEYYSR 200 >gi|89031434|gb|ABD59454.1| Rps4 [Passiflora incarnata x Passiflora sprucei] Length = 183 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|37992707|gb|AAR06532.1| small ribosomal protein 4 [Trachyxiphium drepanophyllum] Length = 199 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH++VN VNI SYRCK D I +K + K A V + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHIVVNDYIVNIPSYRCKPQDFITIKNQQKSEAIVNKNIEFYQKT 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 197 >gi|289599947|gb|ADD12924.1| ribosomal protein S4 [Tetracera billardierei] gi|289599949|gb|ADD12925.1| ribosomal protein S4 [Tetracera empedoclea] gi|289599961|gb|ADD12931.1| ribosomal protein S4 [Tetracera scandens] gi|289599963|gb|ADD12932.1| ribosomal protein S4 [Tetracera volubilis subsp. volubilis] Length = 165 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 163 >gi|157689580|gb|ABV65346.1| ribosomal protein S4 [Urtica urens] Length = 182 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 9/177 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 10 GNDFRNQLRPGKKSQYRIRLEEKQKLRFHYG-LTEQQLLKYVHIAGKAKGSTGQVLLQLL 68 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I V KQKSK L Sbjct: 69 EMRLDNILFRLGLTSTIPQARQLVNHRHILVNGGIVDIPSYRCKPRDIIIVRDKQKSKSL 128 Query: 151 AS-VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++S + ++P+++++ + I S K V + LVVE+YSR Sbjct: 129 VQKYIDSS--SREELPKHLTLYPFQYKGSVNEILDS-KWVGLKI--NELLVVEYYSR 180 >gi|37992573|gb|AAR06465.1| small ribosomal protein 4 [Lepidopilum polytrichoides] Length = 194 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDSIVDIPSYRCKPQDFITIKNQQKSEAIINKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N V I L + + LVVE+YSR Sbjct: 152 KIPNYLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 192 >gi|78369613|gb|ABB43036.1| ribosomal protein 4 [Syrrhopodon involutus] Length = 199 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ + ++ Sbjct: 97 GLAPTIPGARQLVNHRHILVNNHMVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFFSKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 157 KTPNHLTFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|293634105|gb|ADE60432.1| ribosomal protein subunit 4 [Polytrichastrum sphaerothecium] Length = 189 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + + +++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDCIVNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKY 146 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 187 >gi|121761802|gb|ABM64987.1| ribosomal protein S4 [Orthomnion dilatatum] gi|121761804|gb|ABM64988.1| ribosomal protein S4 [Orthomnion dilatatum] Length = 195 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRNSIDLKINELLVVEYYSR 193 >gi|92417445|gb|ABE76818.1| ribosomal protein subunit 4 [Conocephalum conicum] Length = 186 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ ++G ++E++ + A +++ Sbjct: 3 PGLTNKTLKSKSGYINQSISNKKVSQYRIRLEEKQKLRFHFG-LTERQLLKYVRIARKAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 62 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNITVDIPSYNCKPKDVI 121 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + +P ++S + + + + + D + ++++ N Sbjct: 122 TIKDRQKSQSIITKNLKSFQKSKIPNHLSFD----LIQIKGLVNQIIDREW-ILLKINEL 176 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 177 LVVEYYSR 184 >gi|14090438|gb|AAK53504.1| small ribosomal protein 4 [Syrrhopodon fimbriatulus] Length = 182 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN +NI SY+CK D I +K + K +++ + + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNHIINIPSYQCKPQDFITIKDQQKHQTMIVKNINFSPKH 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPNHLTFNSVEKKGLVNQI---LDQEAIGLKINELLVVEYYSR 180 >gi|293634045|gb|ADE60402.1| ribosomal protein subunit 4 [Pogonatum neesii] Length = 191 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + ++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIITKNIDFFQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|289599951|gb|ADD12926.1| ribosomal protein S4 [Tetracera masuiana] Length = 166 Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 2 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 60 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 61 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 120 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 121 --PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 164 >gi|293634025|gb|ADE60392.1| ribosomal protein subunit 4 [Pogonatum aloides] Length = 188 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRC D I +K + + A + + +++ Sbjct: 86 GMAPTIPGARQLVNHKHILVNDNIVNIPSYRCXPXDFITIKNRQESQAIIAKNIDFSQKX 145 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 186 >gi|118626165|emb|CAL39380.1| small ribosomal protein 4 [Anastrophyllum minutum var. minutum] Length = 202 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIXSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRXKQKSQSIXTKNINLFQKLKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|3098154|gb|AAC15525.1| small ribosomal protein 4 [Scouleria aquatica] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPLDFITIKNRQKSQAIISKNINFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPTHLTFNSLQKKGLVNQI---LNRESIDLKINELLVVEYYSR 197 >gi|74273163|gb|ABA01281.1| ribosomal protein S4 [Passiflora trisecta] Length = 183 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + + + +P++++ + + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SSDSFPQEKLPKHLTFHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|17025847|gb|AAL32089.1| ribosomal protein 4 [Mitthyridium sp. Wall 3652] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ ++ Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFFSKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 157 KTPNHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|18027968|gb|AAL55908.1| ribosomal protein S4 [Eriosorus flexuosus] gi|18027972|gb|AAL55910.1| ribosomal protein S4 [Eriosorus flexuosus] gi|18027976|gb|AAL55912.1| ribosomal protein S4 [Eriosorus cheilanthoides] gi|18027978|gb|AAL55913.1| ribosomal protein S4 [Eriosorus cheilanthoides] gi|18027982|gb|AAL55915.1| ribosomal protein S4 [Eriosorus hispidulus] gi|18027984|gb|AAL55916.1| ribosomal protein S4 [Eriosorus lindigii] gi|18027986|gb|AAL55917.1| ribosomal protein S4 [Jamesonia cuatrecasasii] Length = 191 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 4 PGLTGRDKTSNSVDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I + + ++ + + +P++ +S++ D A V +S + V + Sbjct: 123 DIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 179 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 180 ELFVVEFYSR 189 >gi|17025837|gb|AAL32084.1| ribosomal protein 4 [Mitthyridium sp. Mishler 7/23/98] Length = 201 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ ++ Sbjct: 99 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFFSKH 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 159 KTPNHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 199 >gi|14090436|gb|AAK53503.1| small ribosomal protein 4 [Calymperes tahitense] Length = 182 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K +++ + + Sbjct: 80 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQKIIIKNVNFSPKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N V + L + + LVVE+YSR Sbjct: 140 KIPRHLTFNS---VEKKGLVNQLLDQESIGLKINELLVVEYYSR 180 >gi|37992453|gb|AAR06405.1| small ribosomal protein 4 [Canalohypopterygium tamariscinum] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMSPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N + +I L + + LVVE+YSR Sbjct: 157 KIPNHLIYNSLDKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|17025853|gb|AAL32092.1| ribosomal protein 4 [Mitthyridium sp. Wall 3885] Length = 198 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 96 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 156 KTPTHLTFNSVEKKGLVNQI---LDHESIGLKINELLVVEYYSR 196 >gi|219973482|gb|ACL68627.1| ribosomal protein small subunit 4 [Marsilea mollis] Length = 188 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLKYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|121761732|gb|ABM64953.1| ribosomal protein S4 [Plagiomnium venustum] gi|121761783|gb|ABM64978.1| ribosomal protein S4 [Plagiomnium venustum] gi|121761789|gb|ABM64981.1| ribosomal protein S4 [Plagiomnium venustum] Length = 195 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|26421797|gb|AAN78157.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + ++ Sbjct: 93 GMASTIPGARQLVNHRHILVNNRIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 193 >gi|51860467|gb|AAU11370.1| ribosomal protein small subunit 4 [Gnetum parvifolium] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 28 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 86 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ Sbjct: 87 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTII 146 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 147 TRNRNKARENKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 197 >gi|121761881|gb|ABM65026.1| ribosomal protein S4 [Plagiomnium maximoviczii] Length = 195 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 193 >gi|37548863|gb|AAO32700.1| ribosomal protein 4 [Pogonatum neesii] Length = 187 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQAIITKNIDFFQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|51860477|gb|AAU11375.1| ribosomal protein small subunit 4 [Gnetum luofuense] Length = 202 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 31 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 89 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ Sbjct: 90 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTII 149 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 150 TRNRNKARENKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 200 >gi|37548855|gb|AAO32696.1| ribosomal protein 4 [Pogonatum cirratum] Length = 198 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y ++ K S + ++L KQK++ +YG I+E++ Sbjct: 6 KIIRRLGALPGLTNKTPQLKSGY---INQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN V Sbjct: 62 LLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVT 121 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + + +++ +P +++ N + +I L Sbjct: 122 IPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLDKKGLVNQI---LDR 178 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 179 ESIGLKINELLVVEYYSR 196 >gi|78369607|gb|ABB43033.1| ribosomal protein 4 [Syrrhopodon parasiticus] Length = 192 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K Q + + ++ Sbjct: 90 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTTFFSKH 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 150 KTPNHLIFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 190 >gi|548868|sp|P36459|RR4_FESPR RecName: Full=30S ribosomal protein S4, chloroplastic gi|439942|emb|CAA82439.1| ribosomal protein S4 [Festuca pratensis] Length = 196 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKNKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQTLMASSDPGK-LPKHLTID 167 >gi|37992559|gb|AAR06458.1| small ribosomal protein 4 [Hypnella diversifolia] Length = 194 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N +I L + + LVVE+YSR Sbjct: 152 KIPNYLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|7576629|gb|AAF63927.1| ribosomal protein system 4 [Fontinalis dalecarlica] Length = 190 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARNAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFCKKY 148 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YIS+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYISLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|190361261|gb|ACE76935.1| ribosomal protein small subunit 4 [Trichomanes scandens] Length = 167 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 18/166 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG E++ + A +++G T L+ LE RLD IV+R Sbjct: 15 KVSQFGIRLEAKQRLRFNYGS-RERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLA 160 PTI AARQ VNHRHVLVN V+I SY CK+ D+I ++ + K++ L+ S L Sbjct: 74 GMAPTIPAARQLVNHRHVLVNNHIVDIPSYCCKDKDLITLRNQESSRKRIPDHLKLSSLG 133 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + N +A I ++ ++ LVVE+YSR Sbjct: 134 SNNPKGLV-----NGIANRESIDLNINEL---------LVVEYYSR 165 >gi|14090426|gb|AAK53498.1| small ribosomal protein 4 [Mitthyridium fasciculatum] Length = 182 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ ++ Sbjct: 80 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFFSKH 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 140 KTPNHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|46486550|gb|AAS98711.1| ribosomal protein subunit 4 [Mniodendron comatulum] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKNRQKSQAIISKNLDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ ++ +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYSYLEKKGFVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|307602355|gb|ADN68059.1| ribosomal protein S4 [Juniperus pseudosabina] Length = 189 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K ++ Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQGLRNRMKK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKKIDNKRIGLKI--NELLVVEYYSR 187 >gi|18027974|gb|AAL55911.1| ribosomal protein S4 [Eriosorus flexuosus] Length = 189 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 2 PGLTGRDKTSNSVDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 60 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 61 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 120 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I + + ++ + + +P++ +S++ D A V +S + V + Sbjct: 121 DIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 177 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 178 ELFVVEFYSR 187 >gi|29422391|gb|AAO84591.1| small ribosomal protein 4 [Breutelia arundinifolia] Length = 190 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVNGR V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMASTIPGARQLVNHRHILVNGRIVDIPSYRCKPXDFITIKDRXKSQXIISKNIDFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 XIPNHLTYNSXENKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|7576509|gb|AAF63867.1| ribosomal protein system 4 [Leucodon brachypus] Length = 189 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 188 >gi|37992691|gb|AAR06524.1| small ribosomal protein 4 [Stenodictyon pallidum] Length = 194 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFSQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 192 >gi|18028022|gb|AAL55935.1| ribosomal protein S4 [Eriosorus sp. Sanchez-Baracado 329] Length = 190 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQ+++ YG ++E++ + A Sbjct: 3 PGLTGRDKTSNSVDFRVAGDQSISKKISQFCVRLETKQRLRFNYG-LTERQLLKYVRIAR 61 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRC Sbjct: 62 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPK 121 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I + + ++ + + +P++ +S++ D A V +S + V + Sbjct: 122 DIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--N 178 Query: 197 PNLVVEFYSR 206 VVEFYSR Sbjct: 179 ELFVVEFYSR 188 >gi|14276326|gb|AAK58201.1| small ribosomal protein 4 [Bartramia halleriana] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|47606910|gb|AAT36375.1| ribosomal protein subunit 4 [Leucodon julaceus] Length = 199 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 197 >gi|7576639|gb|AAF63932.1| ribosomal protein system 4 [Pilotrichum fendleri] Length = 190 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + +L ++ Sbjct: 89 GMAPTILGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIELYQKF 148 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ ++ + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLINQILDRESIGLK-------INELLVVEYYSR 189 >gi|48527391|gb|AAT45828.1| small ribosomal protein 4 [Plagiochila ovalifolia] Length = 202 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 27/191 (14%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHITINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIM 195 + KQKS+ + + + + +P +++ + + + ++ S +LK + Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGSVNQMISREWINLK-------I 189 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 190 NELLVVEYYSR 200 >gi|37992405|gb|AAR06381.1| small ribosomal protein 4 [Acrocladium auriculatum] Length = 194 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|12642256|gb|AAK00210.1| rps4 [Splachnobryum obtusum] Length = 194 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G +N +S +K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLG-TLPGLSNKTLNLKSSFTNQSSSNKK--ISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R TI ARQ VNH+H+LVN R VN Sbjct: 58 LLNYVRIARKTKGSTGQILLQLLEMRLDNVLFRLGMATTIPGARQLVNHKHILVNNRIVN 117 Query: 130 IGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K Q+ + +P ++ N +I L Sbjct: 118 IPSYRCKPQDFITIKNRQKSQIMITKNVDFFQKSKIPSHLIFNSLEKKGLVNQI---LDQ 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESIGLKINELLVVEYYSR 192 >gi|322434052|ref|YP_004216264.1| RNA-binding S4 domain protein [Acidobacterium sp. MP5ACTX9] gi|321161779|gb|ADW67484.1| RNA-binding S4 domain protein [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 115/214 (53%), Gaps = 18/214 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKM 58 MS R +K K+ R +G L G K + R++ PG HGQ + K + + +QLR KQK+ Sbjct: 1 MSNR--TKFKMQRALGLELPGLGKPGALEKRNFPPGQHGQTTTRRKLTQYAVQLREKQKL 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHN----LISFLESRLDTIVYRAKFVPTIFAARQ 114 +YG + E++ R + A RG S N LI+ LE RLD +V+R F +I AARQ Sbjct: 59 LFHYG-LREEQLRRFVRTA---RGMNSSNWIESLIALLELRLDNVVFRLGFARSIAAARQ 114 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V+H HVLVNG+ + IGS + G + + + ++ EA++ A R +P Y+ + Sbjct: 115 LVSHGHVLVNGKIMTIGSATLRSGTFVRLTDYAA--GAMTEAARNAPRLPLPSYLQFALE 172 Query: 174 NMV-ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+ + + VP+ P V E+Y++ Sbjct: 173 GVNDHGVVRMIPTPEHVPFE--FNPRQVAEYYAK 204 >gi|90970060|gb|ABE02799.1| ribosomal protein S4 [Passiflora gardneri] Length = 183 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 11/170 (6%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIPN-SLDS 136 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P+++++ H V + + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTL-HPFQYKGLV---NQIIDSKW-VGLQINELLVVEYYSR 181 >gi|222084196|ref|YP_002519790.1| ribosomal protein S4 [Gnetum parvifolium] gi|172048621|sp|A6BM54|RR4_GNEPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|149941464|dbj|BAF64899.1| ribosomal protein S4 [Gnetum parvifolium] gi|220983533|dbj|BAH11301.1| ribosomal protein S4 [Gnetum parvifolium] Length = 204 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 7/158 (4%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQK++ ++G ++E++ R + + +G T L+ LE RLD I+YR TI Sbjct: 49 LQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMRLDNILYRLGLAGTIPG 107 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERD--VPEYI 168 ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ ++ R+ +P ++ Sbjct: 108 ARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTIITRNRNKARENKIPYHL 167 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ +I KD+ + + LV+E+YSR Sbjct: 168 TLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 202 >gi|17025806|gb|AAL32070.1| ribosomal protein 4 [Syrrhopodon loreus] Length = 198 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ + + + Sbjct: 96 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKH 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|12330526|gb|AAG52800.1| ribosomal protein 4 [Mitthyridium constrictum] Length = 189 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I K + K +++ ++ + Sbjct: 87 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKSQDFITXKDQQKYQTMIVKNTKFS--- 143 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ + NH N V + L + + LVVE+YSR Sbjct: 144 -PKHKTPNHLTFNSVEKKGLVNQILNQESIGLKINELLVVEYYSR 187 >gi|46486582|gb|AAS98727.1| ribosomal protein subunit 4 [Hypnodendron arcuatum] Length = 185 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 83 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRPKSQAII 132 >gi|190361255|gb|ACE76932.1| ribosomal protein small subunit 4 [Didymoglossum membranaceum] Length = 128 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + + A R++G T L+ LE RLD IV++ Sbjct: 15 KISQFCVRLEAKQRLRFNYG-LTERQLLNYIRIARRAKGSTGQVLLQLLEMRLDNIVFQL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI AARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 74 GMAPTIPAARQLVNHRHILVNNCIVNIPSYRCKPKDFITLK 114 >gi|108861082|gb|ABG21413.1| ribosomal protein small subunit 4 [Marsilea farinosa] gi|108861102|gb|ABG21423.1| ribosomal protein small subunit 4 [Marsilea nashii] gi|108861122|gb|ABG21433.1| ribosomal protein small subunit 4 [Marsilea villosa] Length = 199 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 13 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 68 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 127 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 128 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 162 >gi|49182766|gb|AAT57845.1| small ribosomal protein [Neotrichocolea bissetii] gi|49182809|gb|AAT57866.1| small ribosomal protein [Temnoma pulchellum] Length = 195 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTGKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + L ++ +P +++ + + + + + + + LV Sbjct: 131 TIRNKEKSQSIITRNINLFQKLKIPNHLTFDSTQLRGS---VNQMIHREWIHLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|7576777|gb|AAF63985.1| small ribosomal protein 4 [Psilopilum laevigatum] Length = 189 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEKKQKLRFHYG-ITERQLLNYVRIAGRAKGSTGPILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VN +H+LVN R VNI SYRCK D I +K + + A + +++ Sbjct: 87 GMAPTIPGARQLVNPKHILVNDRIVNIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|63191736|gb|AAY34828.1| small ribosomal protein subunit 4 [Leptotheca gaudichaudii] Length = 198 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNNHIVDIPSYRCKPQDFITIKDRQKSQAIINKNLDFYQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|107770440|gb|ABF83761.1| small ribosomal protein 4 [Dacrycarpus imbricatus] gi|170516245|gb|ACB15124.1| small ribosomal protein 4 [Dacrycarpus imbricatus] Length = 207 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 3 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 61 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 62 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDRQR 120 >gi|123965706|ref|YP_001010787.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9515] gi|152112247|sp|A2BV69|RS4_PROM5 RecName: Full=30S ribosomal protein S4 gi|123200072|gb|ABM71680.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9515] Length = 202 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + + +S PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVTRRLGE-LPGLTRK-ASKKSNPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F TI +RQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLRLLENRLDNVCFRLGFGGTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNG+ ++I Y+CK GDVI +K+K SK+L +E LA +VP +I ++ + Sbjct: 117 VTVNGKVLDIAGYQCKSGDVISIKEKKASKKLVEGNIEFPGLA--NVPPHIELDKPKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 175 ---KINGKCDREWVALEINELLVVEYYSR 200 >gi|42556464|gb|AAS19827.1| small ribosomal protein 4 [Neotrichocolea bissetii] Length = 191 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 8 PGLTGKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIRNKEKSQSIITRNINLFQKLKIPNHLTFDSTQLRGS---VNQMIHREWIHLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|18920727|gb|AAL82408.1| ribosomal protein system 4 [Acrocladium auriculatum] Length = 195 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKS 152 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|91795207|gb|ABE60884.1| ribosomal protein S4 [Passiflora subrotunda] Length = 183 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRLVDIPSYRCKPQDLITVKDAQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|108861112|gb|ABG21428.1| ribosomal protein small subunit 4 [Marsilea quadrifolia] Length = 196 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 10 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 65 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 124 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 125 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 159 >gi|32401834|gb|AAP80905.1| small ribosomal protein 4 [Nageia nagi] Length = 218 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 8 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 66 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 67 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDRQR 125 >gi|29422367|gb|AAO84579.1| small ribosomal protein 4 [Bartramia halleriana] Length = 130 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 78/127 (61%), Gaps = 2/127 (1%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 1 SQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGM 59 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ + Sbjct: 60 APTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKI 119 Query: 165 PEYISVN 171 P +++ N Sbjct: 120 PNHLTYN 126 >gi|7576635|gb|AAF63930.1| ribosomal protein system 4 [Lepidopilum surinamense] Length = 188 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPAARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIIKKNIEFYQKI 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N V I L + + LVVE+YSR Sbjct: 147 KIPNHLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 187 >gi|66866236|gb|AAY57787.1| small ribosomal protein 4 [Pyrrhobryum paramattense] Length = 206 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 99 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDREK 143 >gi|197131478|gb|ACH47257.1| ribosomal protein S4 [Erodium chrysanthum] Length = 198 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 40/221 (18%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K +R+ NL G RP P+ +K + + +L+ KQ Sbjct: 1 MSRYRGPRFKKVQRLETNLPGFTTKRPIIPL-------------KKKRERIYITRLKEKQ 47 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ V Sbjct: 48 KLRLHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNTLFRLGMASTIPQARQLV 106 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHD 173 NHRH+LVNGR V+I SYRCK D++ ++K+K + + L++S + + +P +++ + Sbjct: 107 NHRHILVNGRIVDIPSYRCKPRDILTGREKAKSRNLMQNYLDSSSSSHKRLPNHLTTH-- 164 Query: 174 NMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 P K + + +I + LVVE+YSR Sbjct: 165 ---------PLQYKGLVHQIIDRRCVGLKINEFLVVEYYSR 196 >gi|157785995|gb|ABV74170.1| small ribosomal protein 4 [Hypopterygium tamarisci] Length = 197 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYSFLEKKGLVNQI---LNRESIGLKINELLVVEYYSR 195 >gi|108861120|gb|ABG21432.1| ribosomal protein small subunit 4 [Marsilea villifolia] Length = 191 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 5 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 59 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 60 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 119 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 120 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 154 >gi|77862511|gb|ABB04528.1| small ribosomal protein 4 [Asterella wallichiana] Length = 201 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTISGARQLVNHRHILINNNPVDIPSYNCKPKDII 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLMQIKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|37992433|gb|AAR06395.1| small ribosomal protein 4 [Brymela websteri] Length = 194 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH++VN VNI SYRCK D I +K + K A V + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVNIPSYRCKPQDFITIKNQQKSEAIVNKNIEFYQKT 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|17025851|gb|AAL32091.1| ribosomal protein 4 [Mitthyridium sp. Wall 3637] Length = 199 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 157 KTPTHLTFNSVEKKGLVNQI---LDHESIGLKINELLVVEYYSR 197 >gi|12330520|gb|AAG52797.1| ribosomal protein 4 [Scouleria aquatica] Length = 188 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 27 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGQVLLQLLEMRSDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPLDFITIKNRQKSQAIISKNINFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 146 KVPTHLTFNSLQKKGLVNQI---LNRESIDLKINELLVVEYYSR 186 >gi|74273175|gb|ABA01287.1| ribosomal protein S4 [Passiflora galbana] gi|74273183|gb|ABA01291.1| ribosomal protein S4 [Passiflora mucronata] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 98/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRLVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|145848875|emb|CAJ91114.1| ribosomal protein S4 [Acrocladium chlamydophyllum] Length = 196 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKS 153 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 154 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|77862563|gb|ABB04554.1| small ribosomal protein 4 [Wiesnerella denudata] Length = 201 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +++I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMSPTIPGARQLVNHRHILINNNTIDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K ++K + + + + + +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRAKSQSIITKNLNSFQKPKIPNHLTFDLMQIKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|17025816|gb|AAL32075.1| ribosomal protein 4 [Syrrhopodon croceus] gi|78369615|gb|ABB43037.1| ribosomal protein 4 [Syrrhopodon croceus] Length = 198 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ + + + Sbjct: 96 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKH 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 196 >gi|328488172|gb|AEB19899.1| small ribosomal protein 4 [Perssoniella vitreocincta] Length = 191 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY CK GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCKLGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF-VRIPSSLKDVPYPVIMQPNL 199 +K K K + + L ++ +P +++ N + RI + + L Sbjct: 127 AIKNKQKSQSMITRNLNLLQKFKIPNHLTFNSTQLRGLVNQRIHREFINFK----INELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|307602217|gb|ADN67990.1| ribosomal protein S4 [Callitropsis nootkatensis] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIMNK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + ++ + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQNSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|108861100|gb|ABG21422.1| ribosomal protein small subunit 4 [Marsilea nashii] gi|108861114|gb|ABG21429.1| ribosomal protein small subunit 4 [Marsilea schelpeana] Length = 196 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 10 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 65 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 124 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 125 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 159 >gi|37992653|gb|AAR06505.1| small ribosomal protein 4 [Pilotrichum procerum] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + +L ++ Sbjct: 92 GMAPTILGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNLELYQKF 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ ++ + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLINQILDRESIGLK-------INELLVVEYYSR 192 >gi|78369637|gb|ABB43048.1| ribosomal protein 4 [Calymperes hispidum] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K +++ + + + Sbjct: 97 GIAPTIPGARQLVNHRHILVNNRIVNIPSYPCKLHDFITIKDQQKYQTMIVQNIKFSPKY 156 Query: 163 DVPEYI---SVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P ++ SV +V + S LK + LVVE+YSR Sbjct: 157 KIPSHLIFNSVEQKGVVNQLLDQESIGLK-------INELLVVEYYSR 197 >gi|108861060|gb|ABG21402.1| ribosomal protein small subunit 4 [Marsilea aegyptiaca] gi|108861066|gb|ABG21405.1| ribosomal protein small subunit 4 [Marsilea botryocarpa] gi|108861076|gb|ABG21410.1| ribosomal protein small subunit 4 [Marsilea distorta] gi|108861086|gb|ABG21415.1| ribosomal protein small subunit 4 [Marsilea macrocarpa] gi|108861088|gb|ABG21416.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|108861096|gb|ABG21420.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|108861106|gb|ABG21425.1| ribosomal protein small subunit 4 [Marsilea nubica var. gymnocarpa] gi|108861116|gb|ABG21430.1| ribosomal protein small subunit 4 [Marsilea vera] Length = 200 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 69 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 128 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 129 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|51860471|gb|AAU11372.1| ribosomal protein small subunit 4 [Gnetum montanum] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 28 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 86 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ Sbjct: 87 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTII 146 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 147 TRNRNKARENKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 197 >gi|108861064|gb|ABG21404.1| ribosomal protein small subunit 4 [Marsilea angustifolia] gi|108861078|gb|ABG21411.1| ribosomal protein small subunit 4 [Marsilea drummondii] Length = 200 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 69 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 128 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 129 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|18920775|gb|AAL82432.1| ribosomal protein system 4 [Plagiothecium nemorale] Length = 196 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N+ +I L + + LVVE+YSR Sbjct: 154 KIPNHLTYNYLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|3098238|gb|AAC15567.1| small ribosomal protein 4 [Mniodendron dendroides] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAII 136 >gi|305672315|gb|ADM63581.1| ribosomal protein S4 [Anopterus macleayanus] Length = 173 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 26 QSHSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLE 155 ++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + QKS+ L + L+ Sbjct: 85 TLFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPRDTITARDEQKSRALIQNFLD 144 Query: 156 ASQLAERDVPEYISVN 171 +S ++P +++++ Sbjct: 145 SS--PHEELPNHLTLH 158 >gi|37992571|gb|AAR06464.1| small ribosomal protein 4 [Lepidopilidium laevisetum] Length = 191 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI AARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTISAARQLVNHRHIVVNNYIVDIPSYRCKPQDFITIKNQPKSEAMISKNIEFYKKI 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N + I L + + LVVE+YSR Sbjct: 149 KIPNHLT---SNFLEKKGLINQILDRESIGLKINELLVVEYYSR 189 >gi|67035809|gb|AAY62835.1| small ribosomal protein subunit 4 [Juratzkaeella sinensis] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKFEAIISKNIDFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ ++ + R + LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLINQILDRESTGLK-------INELLVVEYYSR 197 >gi|157689408|gb|ABV65260.1| ribosomal protein S4 [Albizia julibrissin] Length = 187 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 9/170 (5%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R +K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD I Sbjct: 22 RLDNKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVGIARKAKGSTGQVLLQLLEMRLDNI 80 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEA 156 ++R TI ARQ VNHRHVLVNGR V+I SYRCK D+I + QKS+ L + L++ Sbjct: 81 LFRLGMASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPQDIITARDEQKSRTLIQNYLDS 140 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S ++P++++++ +I S K V + LVVE+YSR Sbjct: 141 S--PREELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 185 >gi|118626095|emb|CAL39349.1| small ribosomal protein 4 [Barbilophozia barbata] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ + K + + + L ++ +P +++ + + + ++ + + LV Sbjct: 138 TVRGRQKSQSIITQNINLFQKLKIPSHLTFELAQLRGS---VNQTVNREWVDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|42556520|gb|AAS19855.1| small ribosomal protein 4 [Zoopsis argentea] Length = 191 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNDNIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 127 MIRDKQKSQSMITKNINLFQNLKIPSHLTFDSTKLCGS---INQTINRESIHLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|29422387|gb|AAO84589.1| small ribosomal protein 4 [Fleischerobryum longicolle] Length = 190 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRXEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNARIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|162415120|gb|ABX89134.1| ribosomal protein S4 [Didymodon johansenii] Length = 188 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGLILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K + + +++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNNGIVNIPSYRCKPQDFITINDRKKSQIIITKNVDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTFNSLEKKGLINQI---LDQKSIGLKINELLVVEYYSR 186 >gi|169805300|gb|ACA83749.1| ribosomal protein S4 [Bartramia stricta] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|29422383|gb|AAO84587.1| small ribosomal protein 4 [Plagiopus oederianus] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 15/169 (8%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRXHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRMVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 156 Query: 163 DVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ N + +V + S + ++ N LVVE+YSR Sbjct: 157 KIPNHLTYNSLENKGLVNQILDRES--------IGLKTNELLVVEYYSR 197 >gi|222103470|gb|ACM44264.1| small ribosomal protein subunit 4 [Drummondia sinensis] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 160 KVPNHLTFNSLQKKGLVNQI---LDRESIDLKINELLVVEYYSR 200 >gi|219973326|gb|ACL68549.1| ribosomal protein small subunit 4 [Marsilea coromandelina] gi|219973456|gb|ACL68614.1| ribosomal protein small subunit 4 [Marsilea vestita] Length = 187 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 1 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 55 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 56 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 115 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 116 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 150 >gi|89147840|gb|ABD62768.1| ribosomal protein 4 [Riccardia multifida] Length = 197 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + L+L KQK++ +YG ++E++ A +++G T L+ LE RLD ++R Sbjct: 36 KISQYRLRLEEKQKLRFHYG-LTERQLLKYVCVAKKAKGSTGQLLLQLLEMRLDNTIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHVL+N VNI SY CK GD+I +K + + +L + + + + Sbjct: 95 GMVPTIPAARQLVNHRHVLINANMVNIPSYNCKTGDIITIKARERNRLKIGSDTNSIQKT 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + RI + + + LVVE+YSR Sbjct: 155 GIPNHLAFKSVEFCGSVNRI---IDREGIDLKINELLVVEYYSR 195 >gi|37683568|gb|AAQ98835.1| small ribosomal protein 4 [Pogonatum piliferum] Length = 190 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVNG VNI SYRCK D I +K + + + + +++ Sbjct: 88 GMALTIPEARQLVNHKHILVNGHIVNIPSYRCKPQDFITIKDRQESQILIEKNIDFSQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N + I L + + LVVE+YSR Sbjct: 148 KIPNYLTFNFLDKKGL---INQLLNRESIGLKINELLVVEYYSR 188 >gi|66866231|gb|AAY57785.1| small ribosomal protein 4 [Hymenodontopsis bifaria] Length = 204 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 97 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITMKDRQKYQAII 146 >gi|157689560|gb|ABV65336.1| ribosomal protein S4 [Staphylea colchica] Length = 201 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRPVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNG V+I SYRCK D+I + + K + + L++S ++P++++++ Sbjct: 116 ILVNGCIVDIPSYRCKPQDIITARNEKKSRTLIQNYLDSS--PHEELPKHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|14090444|gb|AAK53507.1| small ribosomal protein 4 [Calymperes palisotii] Length = 182 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K K +++ + + Sbjct: 80 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDHQKYQPMMVKNINFSPKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|42718058|gb|AAS38451.1| rps4 [Splachnum luteum] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQVIISKNIEFYQKY 146 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLIYNSLKNQGLVNQILDRQSIGLK-------INELLVVEYYSR 187 >gi|37992649|gb|AAR06503.1| small ribosomal protein 4 [Pilotrichum bipinnatum] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + +L ++ Sbjct: 92 GMAPTILGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIELYQKF 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ ++ + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLINQILDRESIGLK-------INELLVVEYYSR 192 >gi|33413241|emb|CAD86755.1| ribosomal protein small subunit 4 [Pleurochaete squarrosa] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN R VNI SYR K D I +K + K + + +++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNNRIVNIPSYRFKPQDFITIKDRQKSQVMITKNVDFSQKS 140 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 141 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 181 >gi|17025860|gb|AAL32095.1| ribosomal protein 4 [Mitthyridium sp. Wall 3830] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 157 KTPTHLTFNSVEKKGLVNQI---LDHESIGLKINELLVVEYYSR 197 >gi|59803303|gb|AAX07760.1| Rps4 [Lunularia cruciata] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI A Q VNHRH+L+N +V+I Y CK DVI Sbjct: 78 GSTGQVLLXLLEMRLDNIIFRLGMAPTIPGAGQLVNHRHILINDNTVDIPXYNCKPKDVI 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + ++ +P ++S + + F + + + D + + ++ N Sbjct: 138 TIKNRQKSQSIITKNLTSFQKQKIPNHLSFD----LIQFQGLINQIIDREW-IYLKINEL 192 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 193 LVVEYYSR 200 >gi|46486546|gb|AAS98709.1| ribosomal protein subunit 4 [Mniodendron comosum] Length = 195 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ ++ +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYSYLEKKGFVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|20531069|gb|AAM27356.1| ribosomal protein 4 [Notoligotrichum trichodon] Length = 186 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G + K Y + ++L KQK++ +YG I+E++ + + A R++ Sbjct: 3 PGLTGXTLQLKSGYINQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ V H+H+LVN R VNI SYRCK D I Sbjct: 62 GSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVTHKHILVNDRIVNIPSYRCKPQDFI 121 Query: 142 EVKQKSKQLASV 153 +K + + A + Sbjct: 122 TIKDRQESQAII 133 >gi|219973322|gb|ACL68547.1| ribosomal protein small subunit 4 [Marsilea hirsuta] gi|219973332|gb|ACL68552.1| ribosomal protein small subunit 4 [Marsilea hirsuta] gi|219973334|gb|ACL68553.1| ribosomal protein small subunit 4 [Marsilea hirsuta] gi|219973408|gb|ACL68590.1| ribosomal protein small subunit 4 [Marsilea hirsuta] Length = 188 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|47606908|gb|AAT36374.1| ribosomal protein subunit 4 [Leptotheca gaudichaudii] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNNHIVDIPSYRCKPQDFITIKDRQKSQAIINKNLDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|67036006|gb|AAY62929.1| small ribosomal protein subunit 4 [Habrodon perpusillus] Length = 195 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YIS+ ++ L + + LVVE+YSR Sbjct: 153 KIPNHLTYISLEKKGLINQI------LDRESIGLXINELLVVEYYSR 193 >gi|219973330|gb|ACL68551.1| ribosomal protein small subunit 4 [Marsilea fournieri] gi|219973338|gb|ACL68555.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|219973340|gb|ACL68556.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|219973342|gb|ACL68557.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|219973346|gb|ACL68559.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|219973348|gb|ACL68560.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|219973350|gb|ACL68561.1| ribosomal protein small subunit 4 [Marsilea macropoda] gi|219973374|gb|ACL68573.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973382|gb|ACL68577.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973386|gb|ACL68579.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973388|gb|ACL68580.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973438|gb|ACL68605.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973440|gb|ACL68606.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973442|gb|ACL68607.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973444|gb|ACL68608.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973446|gb|ACL68609.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973448|gb|ACL68610.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973450|gb|ACL68611.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973454|gb|ACL68613.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973460|gb|ACL68616.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973466|gb|ACL68619.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973476|gb|ACL68624.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973480|gb|ACL68626.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973484|gb|ACL68628.1| ribosomal protein small subunit 4 [Marsilea vestita] Length = 188 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 117 DIITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|67035732|gb|AAY62797.1| small ribosomal protein subunit 4 [Quathlamba debilicostata] Length = 196 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 30 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDN 88 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNHRHVLVN V+I SY CK D I +K + K A + + Sbjct: 89 IVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYCCKPEDSITIKNRQKSQAIITKNID 148 Query: 159 LAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ VP +++ + +I L + + LVVE+YSR Sbjct: 149 FSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|46486564|gb|AAS98718.1| ribosomal protein subunit 4 [Spiridens camusii] gi|63191765|gb|AAY34842.1| small ribosomal protein subunit 4 [Spiridens reinwardtii] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIIS 142 >gi|74273205|gb|ABA01302.1| ribosomal protein S4 [Passiflora tacsonioides] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R S+ S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSSRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|53830732|gb|AAU95215.1| small ribosomal protein 4 [Syrrhopodon involutus] Length = 177 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ + ++ Sbjct: 75 GLAPTIPGARQLVNHRHILVNNHMVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFFSKH 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 135 KTPNHLTFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 175 >gi|46486562|gb|AAS98717.1| ribosomal protein subunit 4 [Spiridens vieillardii] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIIS 142 >gi|289576402|dbj|BAI77775.1| ribosomal protein small subunit 4 [Hymenophyllum peltatum] gi|289576410|dbj|BAI77779.1| ribosomal protein small subunit 4 [Hymenophyllum peltatum] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 25 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 84 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 143 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 144 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 187 >gi|77862509|gb|ABB04527.1| small ribosomal protein 4 [Asterella grollei] Length = 200 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 23/189 (12%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 17 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 76 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNPVDIPSYNCKPKDLI 135 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPN- 198 +K + K + +++ + ++ +P NH T V+ + + + D + + + N Sbjct: 136 TIKDRPKSKSIIIKNLNSFQKQKIP-----NHLTFDLTQVKGLVNQIIDREW-IFFKINE 189 Query: 199 -LVVEFYSR 206 LVVE+YSR Sbjct: 190 LLVVEYYSR 198 >gi|32401886|gb|AAP80931.1| small ribosomal protein 4 [Taiwania cryptomerioides] Length = 193 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 7/169 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KPSKYPVRLKEKQRLRFHYG-LTERQLFQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K K + + + + ++D Sbjct: 83 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDKQRLRNIINKNRDIFQKD 142 Query: 164 V---PEYISVNHDNMVATFVRIPSSLKDVP---YPVIMQPNLVVEFYSR 206 P ++++ M I K + + + + LVVE+YSR Sbjct: 143 KMRGPPHLNLIKKTMKKKLQYIGLVKKIIDSNRFGLKINELLVVEYYSR 191 >gi|117306748|emb|CAH73342.1| ribosomal protein S4 [Acrocladium auriculatum] Length = 177 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K K A + Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNKRKSEAII 130 >gi|32892142|gb|AAP89010.1| ribosomal protein S4 [Passiflora quadrangularis] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 24/190 (12%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIAKSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ +E RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLIEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN 198 K QKSK + ++ +P++++++ + +V + D + V +Q N Sbjct: 121 KDEQKSKDMIQN-SFDSFSQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQIN 171 Query: 199 --LVVEFYSR 206 LVVE+YSR Sbjct: 172 ELLVVEYYSR 181 >gi|18920749|gb|AAL82419.1| ribosomal protein system 4 [Isopterygium albescens] Length = 196 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEILLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D+I +K + K + + + +R Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDISSYRCKPQDLITIKNQQKSETIINKNIEFYQRS 153 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 154 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|307602349|gb|ADN68056.1| ribosomal protein S4 [Juniperus procera] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|289599899|gb|ADD12900.1| ribosomal protein S4 [Hibbertia baudouinii] Length = 165 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 25/177 (14%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 ++P++++++ P K + +I + LVVE+YSR Sbjct: 120 --PHEELPKHLTLH-----------PFQYKGLINQIIDNKWIGLKINELLVVEYYSR 163 >gi|283781653|ref|YP_003372408.1| 30S ribosomal protein S4 [Pirellula staleyi DSM 6068] gi|283440106|gb|ADB18548.1| ribosomal protein S4 [Pirellula staleyi DSM 6068] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++ K +++RR+G ++ + + R PG+H + R+ S +G+ KQK+ Sbjct: 1 MARYHGPKARVNRRLGALIYEAAGAARALERRDNPPGMHIKGRRL--SNWGMASAEKQKI 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG + E++ R + +G+T L++ E RLD +V RA + T ARQ + H Sbjct: 59 KHYYG-LGERQLRKYYHMVAAKKGNTGEQLLTLCERRLDNVVRRAGYTKTRPQARQGIVH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H VNG V SY+ + GDVI ++ K PE+++ + +++ AT Sbjct: 118 GHFFVNGVKVTSPSYQLRPGDVITIRPKEAIYGLYKGVCDNHAPQTPEWLTFDSESLRAT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP D PV + ++VVEF SR Sbjct: 178 MMGIPGP-GDYSLPVNV--DIVVEFLSR 202 >gi|170516233|gb|ACB15118.1| small ribosomal protein 4 [Acmopyle pancheri] Length = 222 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 12 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 71 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDQKR 129 >gi|49182774|gb|AAT57849.1| small ribosomal protein [Symphyogyna sp. CD67] Length = 195 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +RS Y L + K S + ++L KQK++ +YG ++ Sbjct: 1 RGKIIRRLGA-LPGLSXEMIGSRSGYINQLAANK---KISQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN Sbjct: 56 ERQLLKYVRIARGAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVNDD 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSS 185 +V+I SY CK DVI ++ + + + + + L ER +P +++ + + +I Sbjct: 116 TVDIPSYNCKPQDVITIRDRRESQSVITKNINLFRERRIPNHLTFDSTRFCGSVNQI--- 172 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 173 IDREWIGLKINELLVVEYYSR 193 >gi|49066380|gb|AAT49276.1| ribosomal protein system 4 [Orthotrichum exiguum] Length = 200 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 98 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKSRQK 142 >gi|37992463|gb|AAR06410.1| small ribosomal protein 4 [Cladomniopsis crenatoobtusa] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDYIVNIPSYRCKPQDFILIKNKKNSEVVIDKNTDLYQKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 197 >gi|37992487|gb|AAR06422.1| small ribosomal protein 4 [Daltonia longifolia] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQQKSEVLINKNIEFSQKS 151 Query: 164 -VPEYISVN---HDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + S LK + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQILNCESIGLK-------INELLVVEYYSR 192 >gi|15145824|gb|AAK83530.1| rps4 [Splachnum rubrum] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQVIISKNIEFYQKY 146 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLIYNSLKNQGLVNQILDRQSIGLK-------INELLVVEYYSR 187 >gi|26399095|sp|P59137|RR4_CATCI RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504381|emb|CAC80635.1| small ribosomal protein 4 [Catharomnion ciliatum] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K + + + ++ +P ++ N Sbjct: 117 ILVNGYIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLIYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDHESIGLKINELLVVEYYSR 200 >gi|74273203|gb|ABA01301.1| ribosomal protein S4 [Passiflora cuprea] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R S+ S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSSRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|289599874|gb|ADD12888.1| ribosomal protein S4 [Dillenia indica] Length = 165 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L++S Sbjct: 60 FRLGMTSTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 163 >gi|42718062|gb|AAS38453.1| rps4 [Splachnum vasculosum] Length = 189 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSXVIISKNIEFYQKY 146 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLIYNSLKKQGLVNQILDRQSIGLK-------INELLVVEYYSR 187 >gi|42556466|gb|AAS19828.1| small ribosomal protein 4 [Nipponolejeunea pilifera] Length = 192 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 30 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQILLQLLEMRLDNTIFCL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI +ARQ VNHRH+ +N +VN+ SY C+ GD+I +K K K + + + + + Sbjct: 89 GMAPTIPSARQLVNHRHIFINNYTVNVPSYNCEPGDIITIKNKEKSQSIITKNINSFQKL 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ N + FV +++ + + LVVE+YSR Sbjct: 149 EIPNHLTFNSIELQG-FVN--QTIRRESIDLKINELLVVEYYSR 189 >gi|3098240|gb|AAC15568.1| small ribosomal protein 4 [Leptotheca gaudichaudii] Length = 195 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 93 GMTPTIPGARQLVNHRHILVNNHIVDIPSYRCKPQDFITIKDRQKSQAIINKNLDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|63101017|gb|AAY33133.1| small ribosomal protein 4 [Pterogoniadelphus montevidensis] Length = 186 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 143 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 144 KIPNHLTYSSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 184 >gi|290467475|gb|ADD25855.1| small ribosomal protein 4 [Hymenophyllum multifidum] Length = 187 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GMSATIPAARQLVNHRHILVNNNIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 141 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 142 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 185 >gi|37992699|gb|AAR06528.1| small ribosomal protein 4 [Tetraphidopsis pusilla] Length = 190 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 PTI ARQ VNHRH+LVN VNI SYRCK D I V+ K K A+ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFIIVENKQKSEAA 140 >gi|67035718|gb|AAY62790.1| small ribosomal protein subunit 4 [Calymperes lonchophyllum] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 VPTI ARQ VNHRH+LVN VNI SY+CK D I +K K +++ + + Sbjct: 92 GIVPTIPGARQLVNHRHILVNNCIVNIPSYQCKPQDFITIKDPQKYQTMIVKNINFSPKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPSHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 192 >gi|289576436|dbj|BAI77792.1| ribosomal protein small subunit 4 [Hymenophyllum perrieri] Length = 195 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 31 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 90 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 149 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 150 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 193 >gi|42794722|gb|AAS45756.1| Rps4 [Thibaudia macrocalyx] Length = 211 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 11/158 (6%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++E+ + A +++G T L+ LE RLD I++R TI ARQ Sbjct: 54 QKLRXHYG-LTERXLLKYVRIAXKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQL 112 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEYI 168 VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + + + VP ++ Sbjct: 113 VNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKPKHKRVPYHL 172 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++N +I ++ K V + + LVVE+YSR Sbjct: 173 TLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|42556446|gb|AAS19818.1| small ribosomal protein 4 [Lepidogyna hodgsoniae] Length = 191 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTPKQKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+L+N +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHRHILINNETVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVL-EASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 ++ K + + + ++P +++++ + + + I D+ + L Sbjct: 127 TIRNGEKSQSIITRNMDSFHKLEIPNHLTLDSKKLQGSINKMIHREWVDLKVNEL----L 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|6002047|emb|CAA58933.1| ribosomal protein S4 [Eichhornia crassipes] Length = 196 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 1/111 (0%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ LE R Sbjct: 32 LKNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K K Sbjct: 91 LDNILFRLGMASTIPPARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDK 141 >gi|289576438|dbj|BAI77793.1| ribosomal protein small subunit 4 [Hymenophyllum sp. Schuettpeltz 283] Length = 195 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 31 KVSQFCVRLEAKQRLRFNYGS-TERQLLRYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 90 GLSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 149 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 150 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 193 >gi|118626045|emb|CAL41747.1| small ribosomal protein 4 [Jungermannia caespiticia] Length = 203 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYNCELGDFI 137 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVA----TFVRIPSSLKDVPYPVIMQ 196 VK K K QL + + +P +++ N + T R +LK + Sbjct: 138 TVKNKQKSQLIITKNVNLFQKLKIPTHLTFNSIELRGSVNQTITRESVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|3098250|gb|AAC15573.1| small ribosomal protein 4 [Spiridens reinwardtii] Length = 179 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 18 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 77 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIIS 127 >gi|222103468|gb|ACM44263.1| small ribosomal protein subunit 4 [Drummondia sinensis] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 160 KVPNHLTFNSLQKKGLVNQI---LDRESIDLKINELLVVEYYSR 200 >gi|118626035|emb|CAL41744.1| small ribosomal protein 4 [Scapania hyperborea] Length = 202 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGS---VNQTVNRECINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|289599876|gb|ADD12889.1| ribosomal protein S4 [Dillenia parkinsonii] Length = 165 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L++S Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 163 >gi|289523341|ref|ZP_06440195.1| ribosomal protein S4 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503033|gb|EFD24197.1| ribosomal protein S4 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 140 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%) Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++F F++A R G HN + LE R+D++VYR + ARQ V H H+ VN Sbjct: 1 MTERQFERFFEKASRMAGQKGHNFLQLLERRVDSVVYRLGIASSRAQARQLVTHGHITVN 60 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIP 183 G+ ++I S K GDVI V S+ + ++ E ++A R +PE++ +N + M V +P Sbjct: 61 GKKLDIPSALVKVGDVIAVAPNSRDIPTIRENLEVASARAIPEWLELNAERMEGRVVSLP 120 Query: 184 SSLK-DVPYPVIMQPNLVVEFYSR 206 + + DVP + L+VE+Y+R Sbjct: 121 TREQIDVP----VNEQLIVEYYAR 140 >gi|108861104|gb|ABG21424.1| ribosomal protein small subunit 4 [Marsilea nubica var. gymnocarpa] Length = 200 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 20/155 (12%) Query: 34 PGLHG-------------QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 PGL G Q K S + ++L AKQ+++ YG ++E++ + A ++ Sbjct: 12 PGLTGKAPNPRESRVASDQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKT 70 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+ Sbjct: 71 KGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDI 130 Query: 141 IEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 I V+ + V E+S+ E +P+++S++ Sbjct: 131 ITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|66866222|gb|AAY57782.1| small ribosomal protein 4 [Leptotheca gaudichaudii] Length = 205 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + D Sbjct: 98 GMTPTIPGARQLVNHRHILVNNHIVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNLD 157 Query: 164 ------VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 FYQKYKIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 203 >gi|46486588|gb|AAS98730.1| ribosomal protein subunit 4 [Dendro-hypnum auricomum] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 4/144 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G L G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 7 RIIRRLGA-LLGLTNKTAQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 62 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 63 LLNHVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVD 122 Query: 130 IGSYRCKEGDVIEVKQKSKQLASV 153 I SYRCK D I +K + K A + Sbjct: 123 IPSYRCKPQDFITIKDRQKSQAII 146 >gi|29027242|gb|AAN47183.1| small ribosomal protein 4 [Hymenodontopsis stresemannii] Length = 199 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNH+H+LVN R V+I SYRCK D I +K + K A + Sbjct: 92 GMTPTIPGARQLVNHKHILVNNRIVDIPSYRCKPQDFITIKNRQKYQAII 141 >gi|63191730|gb|AAY34825.1| small ribosomal protein subunit 4 [Leiomela bartramioides] Length = 194 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 92 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKSHDFITIKDRQKSQTIISKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ N +I L + + LVVE+YSR Sbjct: 152 EIPNHLTYNSSENKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|117306750|emb|CAH73343.1| ribosomal protein S4 [Acrocladium chlamydophyllum] Length = 183 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + ++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKS 140 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 141 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 181 >gi|289576424|dbj|BAI77786.1| ribosomal protein small subunit 4 [Hymenophyllum minimum] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 30 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 89 GMSATIPAARQLVNHRHILVNNNIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 148 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 149 KIPDHLTFSFSEDNIPKGLVNRIANRESIDLNI--NELLVVEYYSR 192 >gi|307602291|gb|ADN68027.1| ribosomal protein S4 [Juniperus communis var. communis] gi|307602293|gb|ADN68028.1| ribosomal protein S4 [Juniperus communis var. depressa] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 24/182 (13%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K + + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQGLRNIMKK 134 Query: 156 ASQLAERD---VPEYIS-----VNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFY 204 ++ ++D VP +++ + +V + RI + ++ LVVE+Y Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVTKIIDNKRIGLKINEL---------LVVEYY 185 Query: 205 SR 206 SR Sbjct: 186 SR 187 >gi|118627538|emb|CAL39402.1| small ribosomal protein 4 [Lophozia excisa] Length = 202 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDTVDIPSYNCQPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L ++ +P ++ + + + ++ + +LK + Sbjct: 138 TIKNKPKSQSIITKNLNLFQKLKIPSHLIFDLTQLQGSVNQMVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|29422397|gb|AAO84594.1| small ribosomal protein 4 [Flowersia sinensis] Length = 198 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 6/145 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G L G P +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 6 RIIRRLGA-LPGLTNKPPQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN VN Sbjct: 62 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHIVN 121 Query: 130 IGSYRCKEGDVIEV--KQKSKQLAS 152 I SYRCK D I + +QKS+ + S Sbjct: 122 IPSYRCKPQDFITIXDRQKSQAIIS 146 >gi|15145828|gb|AAK83532.1| rps4 [Aplodon wormskioldii] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEXKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHKHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIEFYQKY 146 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTFN 155 >gi|20531073|gb|AAM27358.1| ribosomal protein 4 [Theriotia lorifolia] Length = 184 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 23 KISQXRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY CK D I +K + K + +++ +++ Sbjct: 82 GMTPTIPGARQLVNHRHILVNERIVNIPSYHCKPQDFITIKDRQKSQSIIVKNMDFSQKY 141 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 142 KIPNHLTFDSLEKKGLVNQVLDRESIGLK-------INELLVVEYYSR 182 >gi|290794180|gb|ADD64420.1| small ribosomal protein subunit 4 [Habrodon perpusillus] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 151 Query: 163 DVPE---YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YIS+ ++ L + + LVVE+YSR Sbjct: 152 KIPNHLTYISLEKKGLINQI------LDRESIGLXINELLVVEYYSR 192 >gi|32401848|gb|AAP80912.1| small ribosomal protein 4 [Dacrydium cupressinum] Length = 217 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 7/125 (5%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 7 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 65 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKS 147 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K Q+S Sbjct: 66 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDRQRS 125 Query: 148 KQLAS 152 + + + Sbjct: 126 RNIIT 130 >gi|289599872|gb|ADD12887.1| ribosomal protein S4 [Dillenia hookeri] Length = 166 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 2 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 60 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L++S Sbjct: 61 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS 120 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 121 --PHEELPKHLTLHPFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 164 >gi|49182738|gb|AAT57831.1| small ribosomal protein [Lejeunea cladogyna] Length = 192 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 31 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFSL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 90 GMAPTIPNARQLVNHRHIFINDCIVNIPSYNCKPGDIITIKNKEKSQSIINKNINLSQKL 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +++ + + LVVE+YSR Sbjct: 150 QIPNHLTFDSTKLQGL---VNQTIRREWIDLKINELLVVEYYSR 190 >gi|18028024|gb|AAL55936.1| ribosomal protein S4 [Eriosorus hirsutulus] Length = 178 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L KQ+++ YG ++E++ + A ++RG T L+ LE RLD I++R Sbjct: 16 KISQFCVRLETKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNILFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRC D+I + + ++ + + Sbjct: 75 GMASTIPAARQLVNHRHILVNKRIVDIPSYRCNPKDIITTRNRPIS-HNMTKGESIGRDG 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ D A V +S + V + VVEFYSR Sbjct: 134 IPDHLTLSLSKDGEPAGLVNRMASRESVDLEI--NELFVVEFYSR 176 >gi|67035865|gb|AAY62859.1| small ribosomal protein subunit 4 [Rhaphidostichum schwaneckeanum] Length = 192 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + E+ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYEKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTYNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 190 >gi|48927217|emb|CAE47544.1| small ribosomal protein 4 [Equisetum telmateia subsp. braunii] Length = 207 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 NL G V ++ Q + K S +G++L AKQ+++ YG ++E++ + + A Sbjct: 17 NLPGLTNKLVESKKNQTSGSDQSNQKKVSQYGIRLEAKQRLRFNYG-LTERQLLNYVRIA 75 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 ++G T L+ LE RLD I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK Sbjct: 76 RCAKGSTGQILLQLLEMRLDNILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKP 135 Query: 138 GDVIEVKQ-KSKQLASVLEASQLAERDVPEYISVN 171 D+I + K+ Q A+ +P++++++ Sbjct: 136 KDIITIGAPKTYQSIITKRIESFAKDQIPDHLTLS 170 >gi|328541092|gb|AEB21770.1| ribosomal protein S4 [Bazzania nitida] Length = 198 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 37 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 96 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIIAIRDKQKSQSMITKNINLFQNL 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + I ++ + + LVVE+YSR Sbjct: 156 KVPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 196 >gi|90970050|gb|ABE02794.1| ribosomal protein S4 [Passiflora auriculata] Length = 183 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPAGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK GD+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPGDLITVKDEQKSKDM 129 >gi|108861118|gb|ABG21431.1| ribosomal protein small subunit 4 [Marsilea vestita] Length = 196 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 10 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 65 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 124 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I ++ + V E+S+ E +P+++S++ Sbjct: 125 DIITIRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 159 >gi|45271098|gb|AAS56932.1| ribosomal protein small subunit 4 [Selliguea triloba] Length = 184 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 22 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + + ++ Sbjct: 81 GLASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNASRNKFTGGDK- 139 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN V ++ + V + LVVE+YSR Sbjct: 140 TPDHLTISLSEDNKPTGLVNCVANRESVNLNI--NELLVVEYYSR 182 >gi|46486548|gb|AAS98710.1| ribosomal protein subunit 4 [Sciadocladus menziesii] Length = 197 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFSQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLEKKGFVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|67035744|gb|AAY62803.1| small ribosomal protein subunit 4 [Chrysoblastella chilensis] Length = 199 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASV-LEASQLA 160 TI ARQ VNHRH+LVN R VNI SYRCK D I +K QKS+ + S +E SQ Sbjct: 97 GMASTIPGARQLVNHRHLLVNDRIVNIPSYRCKPQDFITIKNCQKSQAIISKNIEFSQ-- 154 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP ++ N +I L + + LVVE+YSR Sbjct: 155 QYKVPNHLIFNSLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|328488168|gb|AEB19897.1| small ribosomal protein 4 [Paraschistochila conchophylla] Length = 191 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQILLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ N + V + + + + LV Sbjct: 127 AIKNKQKSESMITRNLNLLQKFKIPNHLTFNSTQLQG-LVNQKIHRESINFKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|12330476|gb|AAG52775.1| ribosomal protein 4 [Splachnobryum obtusum] Length = 188 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVLFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K + + +++ Sbjct: 86 GMATTIPGARQLVNHRHILVNKRIVNIPSYRCKPQDFITIKDRQKSQIMINKTVDFSQKP 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLIFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 186 >gi|59803299|gb|AAX07758.1| Rps4 [Haplomitrium gibbsiae] Length = 202 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMK 59 MS+ + KI RR+G +L G R PG Q +K S + ++L KQK++ Sbjct: 1 MSRXRGPRSKIIRRLG-SLPGLTNKAPKPR---PGGTDQSIANKKVSQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A +++G T L+ LE RLD ++ R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNVISRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVAT 178 H+L+N ++V+I S C+ GD+I V+ ++ + E + ++R P +++++ + Sbjct: 116 HILLNDKTVDIPSCNCEPGDIITVRDRAGSRPVIAEGTDPSQRSRTPNHLNLDSARNMGF 175 Query: 179 FVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +I SLK + LVVE+YSR Sbjct: 176 VNQIIDREWISLK-------INELLVVEYYSR 200 >gi|62288936|sp|P69642|RR4_FESGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|439940|emb|CAA82438.1| ribosomal protein S4 [Festuca gigantea] gi|439950|emb|CAA82442.1| ribosomal protein S4 [Lolium perenne] Length = 196 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQTLMASSDPGK-LPKHLTID 167 >gi|6002049|emb|CAA58934.1| ribosomal protein S4 [Elettaria cardamomum] Length = 196 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S + ++ Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLG-TLPGLTSKRPRSGSDPKN-------QLRSGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGIASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 NHRH+LVNG V+I SYRCK D+I K K + A + + L+ ++P++++ + Sbjct: 112 NHRHILVNGGIVDIPSYRCKPRDIITTKDKQRSKALIKNSISLSPHEELPKHLTFD 167 >gi|307602295|gb|ADN68029.1| ribosomal protein S4 [Juniperus communis var. saxatilis] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|307602251|gb|ADN68007.1| ribosomal protein S4 [Hesperocyparis abramsiana] gi|307602253|gb|ADN68008.1| ribosomal protein S4 [Hesperocyparis arizonica] gi|307602257|gb|ADN68010.1| ribosomal protein S4 [Hesperocyparis forbesii] gi|307602259|gb|ADN68011.1| ribosomal protein S4 [Hesperocyparis glabra] gi|307602261|gb|ADN68012.1| ribosomal protein S4 [Hesperocyparis goveniana] gi|307602263|gb|ADN68013.1| ribosomal protein S4 [Hesperocyparis lusitanica] gi|307602265|gb|ADN68014.1| ribosomal protein S4 [Hesperocyparis macnabiana] gi|307602267|gb|ADN68015.1| ribosomal protein S4 [Hesperocyparis macrocarpa] gi|307602269|gb|ADN68016.1| ribosomal protein S4 [Hesperocyparis montana] gi|307602271|gb|ADN68017.1| ribosomal protein S4 [Hesperocyparis sargentii] gi|307602273|gb|ADN68018.1| ribosomal protein S4 [Hesperocyparis stephensonii] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|18920743|gb|AAL82416.1| ribosomal protein system 4 [Herzogiella striatella] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|37992483|gb|AAR06420.1| small ribosomal protein 4 [Cyclodictyon roridum] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRDSIDLKINELLVVEYYSR 192 >gi|11228643|gb|AAG33107.1| small ribosomal protein 4 [Eucamptodon muelleri] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE R D +++R Sbjct: 28 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + + A +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQESQAMIIKNIDFSQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + +I L + + LVVE+YSR Sbjct: 147 KVPNHLTFSSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 187 >gi|78369611|gb|ABB43035.1| ribosomal protein 4 [Syrrhopodon japonicus] Length = 193 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHR +LVN R VNI SY+CK D I +K + K +++ + + + Sbjct: 91 GIAPTIPGARQLVNHRQILVNNRIVNIPSYQCKLQDSITIKDEQKYQTMIVKNTNFSPKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N ++ L + + LVVE+YSR Sbjct: 151 KIPSHLTFNSVEQKGIVNQL---LDQESIGLKINELLVVEYYSR 191 >gi|42718056|gb|AAS38450.1| rps4 [Splachnum weberbaueri] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPEDSITIKDRQKSQVIISKNIEFYQKY 146 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLVYNSLKKEGLVTQILDRQLIGLK-------INELLVVEYYSR 187 >gi|41323113|gb|AAR99786.1| small ribosomal protein 4 [Plagiochila gymnocalycina] Length = 202 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + V + + + +P +++ N + + + + + + LV Sbjct: 138 TIKNKQKSQSIVTKNINSFQKLKIPSHLTFNSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|11466566|ref|NP_066456.1| ribosomal protein S4 [Rhodomonas salina] gi|10444153|gb|AAG17727.1|AF288090_3 ribosomal protein S4 [Rhodomonas salina] Length = 206 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 112/200 (56%), Gaps = 13/200 (6%) Query: 1 MSKRESSKHKIDRRIG---ENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQ 56 M KR SK + ++I +N+W K+ RS + QR+K + S FG L+ KQ Sbjct: 1 MKKRFHSKFFLYKKISNKYKNIWSTEKA-FRLRS----VRFQRKKFRRVSNFGKLLQTKQ 55 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 ++ +Y +I EK F+ K A +S T IS LE RLD I++RA F+ +++ A+Q + Sbjct: 56 NLRFFYCNIKEKVFKKQLKNAIKSPLKTVDKFISILEKRLDIILFRASFIFSLYQAKQII 115 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLE--ASQLAERDVPEYISVNHD 173 +H H+++N +++ + + K+ D I++K +K+K L + + ++ E+ +P ++ V+ Sbjct: 116 SHGHIMINNKTIYKLNKKLKQFDFIKLKIEKNKILKRIFDRFKDKILEKTIPVHLEVSFK 175 Query: 174 NMVATFVRIPSSLKDVPYPV 193 N F+ P S ++ YP+ Sbjct: 176 NFTICFL-WPPSFFELYYPI 194 >gi|307602277|gb|ADN68020.1| ribosomal protein S4 [Juniperus ashei] gi|307602279|gb|ADN68021.1| ribosomal protein S4 [Juniperus bermudiana] gi|307602281|gb|ADN68022.1| ribosomal protein S4 [Juniperus blancoi] gi|307602299|gb|ADN68031.1| ribosomal protein S4 [Juniperus deltoides] gi|307602301|gb|ADN68032.1| ribosomal protein S4 [Juniperus deppeana] gi|307602305|gb|ADN68034.1| ribosomal protein S4 [Juniperus durangensis] gi|307602309|gb|ADN68036.1| ribosomal protein S4 [Juniperus flaccida] gi|307602315|gb|ADN68039.1| ribosomal protein S4 [Juniperus gamboana] gi|307602319|gb|ADN68041.1| ribosomal protein S4 [Juniperus gracilior] gi|307602321|gb|ADN68042.1| ribosomal protein S4 [Juniperus horizontalis] gi|307602327|gb|ADN68045.1| ribosomal protein S4 [Juniperus barbadensis var. lucayana] gi|307602329|gb|ADN68046.1| ribosomal protein S4 [Juniperus microsperma] gi|307602331|gb|ADN68047.1| ribosomal protein S4 [Juniperus monosperma] gi|307602333|gb|ADN68048.1| ribosomal protein S4 [Juniperus monticola] gi|307602335|gb|ADN68049.1| ribosomal protein S4 [Juniperus occidentalis] gi|307602337|gb|ADN68050.1| ribosomal protein S4 [Juniperus osteosperma] gi|307602339|gb|ADN68051.1| ribosomal protein S4 [Juniperus oxycedrus] gi|307602341|gb|ADN68052.1| ribosomal protein S4 [Juniperus phoenicea] gi|307602369|gb|ADN68066.1| ribosomal protein S4 [Juniperus saltillensis] gi|307602373|gb|ADN68068.1| ribosomal protein S4 [Juniperus saxicola] gi|307602375|gb|ADN68069.1| ribosomal protein S4 [Juniperus scopulorum] gi|307602377|gb|ADN68070.1| ribosomal protein S4 [Juniperus semiglobosa] gi|307602381|gb|ADN68072.1| ribosomal protein S4 [Juniperus taxifolia] gi|307602387|gb|ADN68075.1| ribosomal protein S4 [Juniperus virginiana] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|118724487|gb|ABL10817.1| ribosomal protein small subunit 4 [Cheilanthes skinneri] Length = 195 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 82/129 (63%), Gaps = 4/129 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ +S +V + ERD Sbjct: 92 GMVSTIPAARQLVSHRHILVNHRIVDIPSYRCKPKDIITIRNRSTSYNAV--KGKFLERD 149 Query: 164 -VPEYISVN 171 VP++++++ Sbjct: 150 KVPDHLTLS 158 >gi|108861062|gb|ABG21403.1| ribosomal protein small subunit 4 [Marsilea ancylopoda] Length = 200 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 69 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 128 Query: 139 DVIEVKQKSKQ----LASVLEASQLAERDVPEYISVN 171 D+I V+ + V E+S+ E +P+++S++ Sbjct: 129 DIITVRNRPTSNNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|108861108|gb|ABG21426.1| ribosomal protein small subunit 4 [Marsilea oligospora] Length = 200 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 69 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 128 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I ++ + V E+S+ E +P+++S++ Sbjct: 129 DIITIRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|15145868|gb|AAK83552.1| rps4 [Tayloria lingulata] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKARQKSQVIINKNIEFHQKH 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ N +I L + + LVVE+YSR Sbjct: 147 KIPDHLIYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|305672227|gb|ADM63537.1| ribosomal protein S4 [Donatia fascicularis] Length = 173 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D I + + K A Sbjct: 79 EMRLDNILFRLGMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDTITARDEQKSRAL 138 Query: 153 V---LEASQLAERDVPEYISVN 171 + L++S ++P +++++ Sbjct: 139 IQNSLDSS--PHEELPNHLTLH 158 >gi|289599887|gb|ADD12894.1| ribosomal protein S4 [Doliocarpus major subsp. major] Length = 165 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 5/167 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQL 159 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSF 119 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 PHEELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 163 >gi|12330508|gb|AAG52791.1| ribosomal protein 4 [Rhachithecium papillosum] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I + + K +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVSIPSYRCKPQDFITIXDRQKSQTIIIKNLDFSQKT 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNQI---LDQESIGLKINELLVVEYYSR 187 >gi|307602311|gb|ADN68037.1| ribosomal protein S4 [Juniperus formosana var. formosana] gi|307602359|gb|ADN68061.1| ribosomal protein S4 [Juniperus rigida var. conferta] gi|307602361|gb|ADN68062.1| ribosomal protein S4 [Juniperus rigida var. rigida] Length = 189 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|219973428|gb|ACL68600.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973486|gb|ACL68629.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973502|gb|ACL68637.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973504|gb|ACL68638.1| ribosomal protein small subunit 4 [Marsilea vestita] Length = 187 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 1 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 55 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 56 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 115 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I ++ + V E+S+ E +P+++S++ Sbjct: 116 DIITIRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 150 >gi|77862537|gb|ABB04541.1| small ribosomal protein 4 [Marchantia chenopoda] Length = 201 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNPVDIPSYNCKPKDII 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLIQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|47606946|gb|AAT36393.1| ribosomal protein subunit 4 [Rhizogonium pennatum] Length = 195 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 137 >gi|328541076|gb|AEB21762.1| ribosomal protein S4 [Drucella integristipula] Length = 199 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSTHNDRSAS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY C+ G++I Sbjct: 75 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNIVDIPSYNCEPGNII 134 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ + K + + + +P +++ + + + I ++ + + L+ Sbjct: 135 TVRDEQKSRSVITKNKDSFQNLKIPNHLTFDSIKLCGS---INQTINREWIDLKINELLI 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|219973320|gb|ACL68546.1| ribosomal protein small subunit 4 [Marsilea ancyclopoda] gi|219973412|gb|ACL68592.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973414|gb|ACL68593.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973416|gb|ACL68594.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973418|gb|ACL68595.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973420|gb|ACL68596.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973422|gb|ACL68597.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973424|gb|ACL68598.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973426|gb|ACL68599.1| ribosomal protein small subunit 4 [Marsilea oligospora] gi|219973436|gb|ACL68604.1| ribosomal protein small subunit 4 [Marsilea vestita] Length = 188 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 11/156 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQ----LASVLEASQLAERDVPEYISV 170 D+I V+ + V E+S+ E +P+++S+ Sbjct: 117 DIITVRNRPTSNNVLKGGVFESSRSNE--IPDHLSL 150 >gi|37683560|gb|AAQ98831.1| small ribosomal protein 4 [Pogonatum procerum] Length = 173 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 12 KISQYRIRLKEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 71 GMAPTIPGARQLVNHKHILVNDDIVNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKY 130 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 131 KIPNHLTFSSLEKKGLVNQILDRESIDLK-------INELLVVEYYSR 171 >gi|15145826|gb|AAK83531.1| rps4 [Splachnum pensylvanicum] Length = 172 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKNRQK 131 >gi|12642264|gb|AAK00214.1| rps4 [Amblyodon dealbatus] gi|42718118|gb|AAS38481.1| rps4 [Amblyodon dealbatus] Length = 188 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 86 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|47606936|gb|AAT36388.1| ribosomal protein subunit 4 [Pyrrhobryum paramattense] Length = 194 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G K+P T S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 RIIRRLGALPGLTNKTPQLTSS---SINQSTSNRKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L LE RLD I++R PTI ARQ VNHRH+LVN R V+ Sbjct: 58 LLNYVRIARKAKGSTGEVLSQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVNDRIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 118 IPSYRCKPQDFITIKDQEKYQTIISKNIDFYQKYKIPNHLTYNFLEKKGVVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESISLKINELLVVEYYSR 192 >gi|42556456|gb|AAS19823.1| small ribosomal protein 4 [Mastigolejeunea auriculata] gi|134274699|emb|CAL30291.1| small ribosomal protein 4 [Mastigolejeunea auriculata] Length = 188 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 14/183 (7%) Query: 34 PGLHGQRRKSKP---------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL G+ K+K S + ++L KQK++ +YG ++E++ + A +++G T Sbjct: 8 PGLTGKISKTKIDRSTLNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGST 66 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++ TI +ARQ VNHRH+ +N VNI SY CK GD+I +K Sbjct: 67 GQVLLQLLEMRLDNTIFCLGMATTIPSARQLVNHRHIFINDYIVNIPSYNCKPGDIITIK 126 Query: 145 QKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K K + + + L+++ +P +++ + + + +++ + + LVVE+ Sbjct: 127 NKEKSQSIISKNINLSQKLQIPNHLTFDSTQLRGL---VNQTIRREWIDLKINELLVVEY 183 Query: 204 YSR 206 YSR Sbjct: 184 YSR 186 >gi|42556516|gb|AAS19853.1| small ribosomal protein 4 [Trocholejeunea sandvicensis] Length = 188 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 14/183 (7%) Query: 34 PGLHGQRRKSKP---------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL G+ K+K S + ++L KQK++ +YG ++E++ + A +++G T Sbjct: 8 PGLTGKISKTKIDRSALNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGST 66 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++ TI +ARQ VNHRH+ +N VNI SY CK GD+I +K Sbjct: 67 GQVLLQLLEMRLDNTIFCLGMATTIPSARQLVNHRHIFINDYIVNIPSYNCKPGDIITIK 126 Query: 145 QKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K K + + + L+++ +P +++ + + + +++ + + LVVE+ Sbjct: 127 NKEKSQSIISKNINLSQKTQIPNHLTFDSTQLRGL---VNQTIRREWIDLKINELLVVEY 183 Query: 204 YSR 206 YSR Sbjct: 184 YSR 186 >gi|20531122|gb|AAM27381.1| ribosomal protein 4 [Rosulabryum billarderi] Length = 187 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R VNI SYRCK D I +K + K A + + L ++ Sbjct: 85 GMASTIPGARQLVNHRHILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQK- 143 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 Y + NH + F++ + L + + LVVE+YSR Sbjct: 144 ---YKTPNH--LTYNFLKKKGLVNQILDRESIGLKINELLVVEYYSR 185 >gi|46486536|gb|AAS98704.1| ribosomal protein subunit 4 [Rhizogonium distichum] Length = 195 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQKYQTIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 193 >gi|323148832|ref|YP_004221925.1| ribosomal protein S4 [Erodium carvifolium] gi|316926296|gb|ADU58149.1| ribosomal protein S4 [Erodium carvifolium] Length = 201 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + +L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 33 RFKKKSQYHTRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGEVLLQLLEMRLDNIL 91 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA 160 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I ++K K + Q + Sbjct: 92 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAREKEKSRTLIQNYLQNS 151 Query: 161 ERDVPEYISVNH-DNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 P NH + + + + D + V ++ N LVVE+YSR Sbjct: 152 LNSSPRRKLANHLTTQPLQYKGLVNQIIDSKW-VGLKINELLVVEYYSR 199 >gi|307602313|gb|ADN68038.1| ribosomal protein S4 [Juniperus formosana var. mairei] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|289599879|gb|ADD12890.1| ribosomal protein S4 [Dillenia retusa] Length = 165 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L++S Sbjct: 60 FRLGMAXTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 163 >gi|3098206|gb|AAC15551.1| small ribosomal protein 4 [Amblyodon dealbatus] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|305672205|gb|ADM63526.1| ribosomal protein S4 [Goodenia ovata] Length = 141 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQ+M +YG ++E++ + A +++G+TS L+ LE RLD I++R Sbjct: 28 KQSQYFIRLKEKQRMSLHYG-LTERQLLKYVRIAGKAKGETSRVLLQLLEMRLDNILFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 V T+ ARQ V HRH+LVNGR V+I SYRCK D IE + Sbjct: 87 GMVTTLPGARQLVTHRHILVNGRIVDIPSYRCKPQDTIEAR 127 >gi|49182805|gb|AAT57864.1| small ribosomal protein [Targionia hypophylla] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N ++I SY CK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNPIDIPSYNCKPKDII 130 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K +L + ++ +P +++ + + +I ++ Y I + LV Sbjct: 131 TIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLVQVKGLVNQIID--REWIYLKINEL-LV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|121761771|gb|ABM64972.1| ribosomal protein S4 [Plagiomnium succulentum] gi|121761773|gb|ABM64973.1| ribosomal protein S4 [Plagiomnium succulentum] gi|121761777|gb|ABM64975.1| ribosomal protein S4 [Plagiomnium succulentum] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|17025822|gb|AAL32078.1| ribosomal protein 4 [Syrrhopodon apertus] Length = 199 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKIKGSTGKVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ + + + Sbjct: 97 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|26399194|sp|Q9M4C3|RR4_PLARP RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017979|emb|CAB92154.1| small ribosomal protein 4 [Plagiochasma rupestre] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSK Y + Sbjct: 1 MSRYRGPRVKIIRRLGA---------------LPGLTNKTFKSKSGYINQSTSNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEY 167 I ARQ VNH+H+L+N +V+I SY CK D+I +K + K + + + ++ +P + Sbjct: 105 IPGARQLVNHQHILINNNTVDIPSYNCKPKDIITIKDRQKSQSIITKNLNFFQKQKIPNH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + +I ++ Y I + LVVE+YSR Sbjct: 165 LTFDLIQFKGLINQIVD--RECIYLKINEL-LVVEYYSR 200 >gi|219973452|gb|ACL68612.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973458|gb|ACL68615.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973464|gb|ACL68618.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973468|gb|ACL68620.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973470|gb|ACL68621.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973472|gb|ACL68622.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973474|gb|ACL68623.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973478|gb|ACL68625.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973488|gb|ACL68630.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973490|gb|ACL68631.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973492|gb|ACL68632.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973494|gb|ACL68633.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973496|gb|ACL68634.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973498|gb|ACL68635.1| ribosomal protein small subunit 4 [Marsilea vestita] gi|219973500|gb|ACL68636.1| ribosomal protein small subunit 4 [Marsilea vestita] Length = 188 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D+I ++ + V E+S+ E +P+++S++ Sbjct: 117 DIITIRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 151 >gi|118625997|emb|CAL41736.1| small ribosomal protein 4 [Riccardia capensis] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G +RS + K S + L+L KQK++ Sbjct: 1 MSRYRGPRTKIIRRLG-TLPGLTSRIPKSRS--SSIDRSAANKKISQYRLRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD ++R VPTI AARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVCVAKKAKGSTGQLLLQLLEMRLDNTIFRLGMVPTIPAARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATF 179 VL+N VNI SY CK GD+I +K + + +L + + + +P +++ + Sbjct: 117 VLINANMVNIPSYNCKTGDIITIKARERNRLKMGSDTISIQKTGIPNHLAFKSVEFSGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI + + + LVVE+YSR Sbjct: 177 NRI---IDREGIDLKINELLVVEYYSR 200 >gi|46486554|gb|AAS98713.1| ribosomal protein subunit 4 [Sciadocladus kerrii] Length = 199 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN R V+I SYRCK D I +K + K + + +++ Sbjct: 97 GMAPTIPGARQLINHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIHFSQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGFVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|3098192|gb|AAC15544.1| small ribosomal protein 4 [Bartramia stricta] Length = 199 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|26399112|sp|P59146|RR4_LEUSC RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504367|emb|CAC80644.1| small ribosomal protein 4 [Leucodon sciuroides] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K A + + + + Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQNS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|77862547|gb|ABB04546.1| small ribosomal protein 4 [Peltolepis quadrata] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + + A +++ Sbjct: 17 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK DVI Sbjct: 76 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNMVDIPSYNCKPKDVI 135 Query: 142 EVKQKSK 148 +K + K Sbjct: 136 TIKDRQK 142 >gi|41323091|gb|AAR99775.1| small ribosomal protein 4 [Plagiochila britannica] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 27/191 (14%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYSDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHITINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIP----SSLKDVPYPVIM 195 + KQKS+ + + + + +P +++ + + + ++ ++LK + Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGSVNQMINREWTNLK-------I 189 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 190 NELLVVEYYSR 200 >gi|63191645|gb|AAY34784.1| small ribosomal protein subunit 4 [Matteria gracillima] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPLDFITIKDRRK 144 >gi|156618909|ref|YP_001430045.1| ribosomal protein S4 [Cuscuta gronovii] gi|171769771|sp|A7M903|RR4_CUSGR RecName: Full=Plastid 30S ribosomal protein S4 gi|156555947|emb|CAM98331.1| ribosomal protein S4 [Cuscuta gronovii] Length = 197 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 111/208 (53%), Gaps = 15/208 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP R L Q R S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKSPRAIRD----LRNQSR----SEYRIRLEEKQKLRF 52 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 53 HYG-LTEKQLINYVRIARKAKGSTGKVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 111 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT-F 179 VLVNGR V+ SYRCK D+I K +K + VL + L E + H N+ +T + Sbjct: 112 VLVNGRLVDRPSYRCKPRDIIMPKNTTK--SGVLVQNSLQLFTGKELAT--HLNLFSTPY 167 Query: 180 VRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 + + + D + + + LVVE+YSR Sbjct: 168 KGLVNKIVDTNWIGLKINELLVVEYYSR 195 >gi|47606944|gb|AAT36392.1| ribosomal protein subunit 4 [Rhizogonium novae-hollandiae] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 137 >gi|307602255|gb|ADN68009.1| ribosomal protein S4 [Hesperocyparis bakeri] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKEKQ 126 >gi|42556406|gb|AAS19798.1| small ribosomal protein 4 [Chaetophyllopsis whiteleggei] Length = 191 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNNNTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + L ++ +P +++ + + FV + + V + LV Sbjct: 127 TIRNGQKSQSIITKNLNLFQKSKIPSHLTFDLTRLXG-FVNQTVNREWVNLKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|37683572|gb|AAQ98837.1| small ribosomal protein 4 [Pogonatum pergranulatum] Length = 187 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIALEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + + + +++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQTIIAKNIDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 185 >gi|46486566|gb|AAS98719.1| ribosomal protein subunit 4 [Mniodendron camptotheca] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTIIS 143 >gi|66352022|gb|AAY44744.1| ribosomal protein system 4 [Splachnum pensylvanicum] Length = 173 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKNRQK 132 >gi|63191745|gb|AAY34832.1| small ribosomal protein subunit 4 [Goniobryum subbasilare] Length = 198 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 140 >gi|307602383|gb|ADN68073.1| ribosomal protein S4 [Juniperus thurifera] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K + + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQGLRNRMKK 134 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NREIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|74273129|gb|ABA01264.1| ribosomal protein S4 [Passiflora pohlii] Length = 186 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 23/176 (13%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDMIK------ 131 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 S + +N+ + P K + +I + LVVE+YSR Sbjct: 132 ------KSLDSFSRNNLPTHLILYPQKYKGLVTQIIDSKCLGLKINEFLVVEYYSR 181 >gi|42556498|gb|AAS19844.1| small ribosomal protein 4 [Scapania undulata] Length = 191 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVA----TFVRIPSSLKDVPYPVIMQ 196 + K K + + + L ++ +P +++ + + T R +LK + Sbjct: 127 TIGNKQKSQSIITKNLNLFQKLKIPSHLTFDLAQLQGYVNQTVNREWINLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|12330498|gb|AAG52786.1| ribosomal protein 4 [Pentastichella pentasticha] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPQDFITIKNRQK 131 >gi|67035748|gb|AAY62805.1| small ribosomal protein subunit 4 [Pentastichella pentasticha] Length = 193 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 91 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPQDFITIKNRQK 135 >gi|63191755|gb|AAY34837.1| small ribosomal protein subunit 4 [Macrocoma tenuis] Length = 196 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNQRIVDIPSYRCKPLDFITIKDRRK 138 >gi|307602275|gb|ADN68019.1| ribosomal protein S4 [Juniperus angosturana] gi|307602287|gb|ADN68025.1| ribosomal protein S4 [Juniperus coahuilensis] gi|307602289|gb|ADN68026.1| ribosomal protein S4 [Juniperus comitana] gi|307602343|gb|ADN68053.1| ribosomal protein S4 [Juniperus pinchotii] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS---KQLAS 152 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K+K ++ Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLIFIKEKQGLRNRMKK 134 Query: 153 VLEASQLAERDVPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +E Q + VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|289599901|gb|ADD12901.1| ribosomal protein S4 [Hibbertia bracteata] Length = 168 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 4 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 62 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K + + L++S Sbjct: 63 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRDLIQNYLDSS 122 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 123 --PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 166 >gi|42718060|gb|AAS38452.1| rps4 [Splachnum melanocaulon] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQK 131 >gi|270300681|gb|ACZ69419.1| ribosomal protein S4 [Radula complanata] gi|270300683|gb|ACZ69420.1| ribosomal protein S4 [Radula complanata] gi|270300685|gb|ACZ69421.1| ribosomal protein S4 [Radula complanata] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 24/215 (11%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSISIDRSMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH+H ++N +VNI SY C+ GD+I V+ + K + + + L ++ ++P NH Sbjct: 112 VNHKHFVINNFTVNIPSYNCELGDIITVRNRHKSKSIITKNMNLFQKLEIP-----NHLT 166 Query: 175 MVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 +T +R S + + Y I + LVVE+YSR Sbjct: 167 FDSTQLR-GSINQRIDYNSINFKINELLVVEYYSR 200 >gi|270300639|gb|ACZ69398.1| ribosomal protein S4 [Ptilidium ciliare] Length = 202 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTGKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY CK GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIPSYNCKPGDMI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + L ++ +P +++ + + + + + + + LV Sbjct: 138 TIRNREKSQSIITRNINLFQKLKIPNHLTFDLTQLRGS---VNQMIHREWIHLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|49182750|gb|AAT57837.1| small ribosomal protein [marchantiophyte contaminant] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKPKSSYIDRSISNKKVSQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINSDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K QL + + +P +++++ + FV ++ + + LV Sbjct: 131 TVKTKQKSQLIVTKNINLFQKLKIPSHLTLDSTELRG-FVN--QTINREWIDLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|58293887|gb|AAW69890.1| small ribosomal protein 4 [Pentastichella pentasticha] gi|58293891|gb|AAW69892.1| small ribosomal protein 4 [Pleurorthotrichum chilense] Length = 189 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPQDFITIKNRQK 131 >gi|47606902|gb|AAT36371.1| ribosomal protein subunit 4 [Goniobryum subbasilare] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 137 >gi|118724499|gb|ABL10823.1| ribosomal protein small subunit 4 [Aleuritopteris farinosa] Length = 194 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T L+ LE RLD Sbjct: 27 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVLLQLLEMRLDN 85 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN V+I SYRCK D+I ++ + + + Sbjct: 86 VIFQLGMASTIPAARQLVSHRHILVNRHIVDIPSYRCKPKDIITIRNRPTSYNAA-KGKS 144 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 145 LGRDEVPDHLTLSISKTNESTGLVNHMANRESVNLDI--NELLVVEYHSR 192 >gi|37992657|gb|AAR06507.1| small ribosomal protein 4 [Pilotrichella pandurifolia] Length = 200 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 157 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 158 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 198 >gi|32892102|gb|AAP88990.1| ribosomal protein S4 [Passiflora cincinnata] Length = 183 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P++++++ +I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|49182688|gb|AAT57806.1| small ribosomal protein [Cephaloziella hirta] gi|49182728|gb|AAT57826.1| small ribosomal protein [Cephaloziella varians] Length = 195 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNSNLVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + + + +P +++ + + + I + + + LV Sbjct: 131 TIKNKQKSQSIISKNLNSFQKSKIPSHLTFDLTQLQGS---INQKVNREWVNLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|78369609|gb|ABB43034.1| ribosomal protein 4 [Syrrhopodon mauritianus] Length = 182 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I+++ Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKTKGSTGQVLLQLLEMRLDNIIFQL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K + K + + + + Sbjct: 80 GIAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITIKDQQKYQTMIGKNVNFSPKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 140 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|37992609|gb|AAR06483.1| small ribosomal protein 4 [Orthostichella pentasticha] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPQDFITIKNQRK 137 >gi|14090460|gb|AAK53515.1| small ribosomal protein 4 [Exostratum blumei] Length = 182 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K + + + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNLIVNIPSYQCKPQDFITIKDQKKYQKMITKNTNF---- 135 Query: 164 VPEYISVNHD--NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y + NH N V + L + + LVVE+YSR Sbjct: 136 FPKYKTPNHLIFNSVEKKGLVNQILDQEAIGLKINELLVVEYYSR 180 >gi|3098236|gb|AAC15566.1| small ribosomal protein 4 [Mniodendron camptotheca] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTIIS 137 >gi|67035750|gb|AAY62806.1| small ribosomal protein subunit 4 [Pleurorthotrichum chilense] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPQDFITIKNRQK 133 >gi|77862535|gb|ABB04540.1| small ribosomal protein 4 [Mannia fragrans] Length = 201 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N ++I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNPIDIPSYNCKPKDII 136 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K +L + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLVQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|32401888|gb|AAP80932.1| small ribosomal protein 4 [Fitzroya cupressoides] Length = 193 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R+ G T L+ LE RLD I++R Sbjct: 33 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAEGSTGQVLLQLLEMRLDNILFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K+K Sbjct: 92 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKEKQ 135 >gi|170516241|gb|ACB15122.1| small ribosomal protein 4 [Papuacedrus papuana] Length = 198 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 34 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K+K Sbjct: 93 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKKKQ 136 >gi|118626041|emb|CAL39332.1| small ribosomal protein 4 [Scapania undulata] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVA----TFVRIPSSLKDVPYPVIMQ 196 + K K + + + L ++ +P +++ + + T R +LK + Sbjct: 138 TIGNKQKSQSIITKNLNLFQKLKIPSHLTFDLAQLQGYVNQTVNREWINLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|77862515|gb|ABB04530.1| small ribosomal protein 4 [Athalamia pinguis] Length = 201 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKFGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD IV+R PTI ARQ VNHRH+L+N V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILINNNIVDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 SIKDRPKSQSIITKNLNSFQKQKIPNHLTFDLMQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|49182785|gb|AAT57854.1| small ribosomal protein [Ptilidium ciliare] Length = 188 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 5 PGLTGKILKPKSSYIDRSTSNKKVSHYRIRLEEKQKLRFHYG-LTERQLLKYVCIARKAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI SY CK GD+I Sbjct: 64 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIPSYNCKPGDMI 123 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + L ++ +P +++ + + + + + + + LV Sbjct: 124 TIRNREKSQSIITRNINLFQKLKIPNHLTFDLTQLRGS---VNQMIHREWIHLKINELLV 180 Query: 201 VEFYSR 206 VE+YSR Sbjct: 181 VEYYSR 186 >gi|46811054|gb|AAT01845.1| small ribosomal protein 4 [Sphaerocarpos texanus] Length = 179 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 18 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N +V+I SY CK DVI +K + K + + + + + Sbjct: 77 GMAPTIPGARQLVNHRHILINNNTVDIPSYSCKPKDVITIKDRQKSQSIITKNINSFQKP 136 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P ++S + + F + + + D + ++ N LVVE+YSR Sbjct: 137 KIPNHLSFD----LIQFKGVVNQIIDRE-SIYLKINELLVVEYYSR 177 >gi|42556400|gb|AAS19795.1| small ribosomal protein 4 [Blepharostoma trichophyllum] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINTDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ +P +++ + + + I + + + LV Sbjct: 127 TVRNKQKSQSLITKNINLFQKLKIPSHLTFDSTKLQGS---INQMINREWINLNINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|294337230|emb|CAQ52764.1| ribosomal protein S4 [Orthostichella rigida] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|219973384|gb|ACL68578.1| ribosomal protein small subunit 4 [Marsilea mollis] Length = 188 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 18 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLIYVRIARKTKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 77 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 136 Query: 155 EASQLAERDVPEYISVN 171 E+S+ ++P+++S++ Sbjct: 137 ESSR--SNEIPDHLSLS 151 >gi|66352020|gb|AAY44743.1| ribosomal protein system 4 [Splachnum pensylvanicum] Length = 190 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQK 132 >gi|37992611|gb|AAR06484.1| small ribosomal protein 4 [Orthostichella pentasticha] Length = 192 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPQDFITIKNQRK 134 >gi|3098242|gb|AAC15569.1| small ribosomal protein 4 [Goniobryum subbasilare] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 98 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 142 >gi|77862553|gb|ABB04549.1| small ribosomal protein 4 [Riccia fluitans] Length = 201 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTFKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNH+H+L+N +V+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHQHILINNNTVDIPSYNCKPKDII 136 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + ++ +P +++ + +I ++ Y I + LV Sbjct: 137 TIKDRQKSQSIITKNLTFFQKQKIPNHLTFDLIQFKGLINQIVD--RECIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|289599937|gb|ADD12919.1| ribosomal protein S4 [Hibbertia vestita] Length = 165 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEAS 157 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K + + L++S Sbjct: 60 FRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRDLIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 163 >gi|190361263|gb|ACE76936.1| ribosomal protein small subunit 4 [Vandenboschia speciosa] Length = 182 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQK++ YG +E++ + A R++G T L+ LE RLD IV++ Sbjct: 16 KVSQFCVRLEAKQKLRFNYGS-TERQLLKYVRIARRAKGSTGEVLLQLLEMRLDNIVFQL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 PTI AARQ VNHRH+LVN ++I SYRCK D+I +K S Sbjct: 75 SMAPTIPAARQLVNHRHILVNNCIIDIPSYRCKPKDIISLKSGS 118 >gi|121761823|gb|ABM64997.1| ribosomal protein S4 [Plagiomnium maximoviczii] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRESIDLKINELLVVEYYSR 193 >gi|118724489|gb|ABL10818.1| ribosomal protein small subunit 4 [Cheilanthes tomentosa] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEAS 157 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V ++ Sbjct: 87 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAVKVKGE 146 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++++++ M + + + LVVE++SR Sbjct: 147 SFGRDEVPDHLTLSISKMSEPTGLVNHMANRESVNLDINELLVVEYHSR 195 >gi|328488188|gb|AEB19907.1| small ribosomal protein 4 [Schistochila gayana] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNNIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + ++ L + +P +++ + + + + + + LV Sbjct: 127 AIKNKQKSQSMIIRNLDLLHKLKIPNHLTFDSTQLQGL---VSQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|219973380|gb|ACL68576.1| ribosomal protein small subunit 4 [Marsilea mollis] Length = 188 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 18 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 77 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 136 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 137 ESSRSNE--IPDHLSLS 151 >gi|115531917|ref|YP_784073.1| ribosomal protein S4 [Pelargonium x hortorum] gi|122164277|sp|Q06FV8|RR4_PELHO RecName: Full=30S ribosomal protein S4, chloroplastic gi|112382071|gb|ABI17264.1| ribosomal protein S4 [Pelargonium x hortorum] Length = 214 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 9/170 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 43 KKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNTLFRL 101 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 TI ARQ VNHRH+LVNGR V+I SYRCK D+I ++K K A + L+++ Sbjct: 102 GMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLISGREKEKSKALIQNYLDSTAKR 161 Query: 161 ERDVPEYISVNHD----NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ + H +++ V+ K+V I + LV+E+YSR Sbjct: 162 PIPLPKHLLLFHSDDPRDLLKGSVKKIIDRKEVGLKKIKE-LLVIEYYSR 210 >gi|63191675|gb|AAY34799.1| small ribosomal protein subunit 4 [Orthostichella pentasticha] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|260886902|ref|ZP_05898165.1| ribosomal protein S4 [Selenomonas sputigena ATCC 35185] gi|330839300|ref|YP_004413880.1| ribosomal protein S4 [Selenomonas sputigena ATCC 35185] gi|260863501|gb|EEX78001.1| ribosomal protein S4 [Selenomonas sputigena ATCC 35185] gi|329747064|gb|AEC00421.1| ribosomal protein S4 [Selenomonas sputigena ATCC 35185] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 22/193 (11%) Query: 29 TRSYG--PGLHGQRRKSK---------PSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 RS G PG+ G R+SK S +G+QL+ KQK K YG + EK+FR +++A Sbjct: 12 CRSLGIEPGMVGISRQSKRQPRRQARKVSEYGMQLKEKQKAKFIYG-VLEKQFRKYYEKA 70 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 G T NL+ LE R+D +VYR T ARQ V H H+ VNG+ ++I S + Sbjct: 71 KTMPGVTGENLLGLLERRIDNVVYRLGLAQTRRQARQLVTHGHIRVNGKRLDIPSALVRA 130 Query: 138 GDVIEVKQKSKQLASVLEASQLAER----DVPEYISVNHDNMVATFVRIPSSLKDVPYPV 193 D I + +KS+ A LAE ++P +++ + + T R PS ++ PV Sbjct: 131 EDEITIDEKSRSNAFF---KALAENYKPLNLPAWLAADGAKLSGTVTRYPSR-DEIDVPV 186 Query: 194 IMQPNLVVEFYSR 206 Q +VE YSR Sbjct: 187 NEQA--IVELYSR 197 >gi|3098260|gb|AAC15578.1| small ribosomal protein 4 [Plagiopus oederi] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDRMVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|74273187|gb|ABA01293.1| ribosomal protein S4 [Passiflora odontophylla] Length = 183 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 18/187 (9%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVCIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 K QKSK + + +P+++++ H V + + D + V +Q N L Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEKLPKHLTL-HPFQYKGLV---NQIIDSKW-VGLQINELL 174 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 175 VVEYYSR 181 >gi|294337086|emb|CAQ52693.1| ribosomal protein S4 [Callicostella cf. africana Rikkinen et al. 21] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKI 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 200 >gi|219973376|gb|ACL68574.1| ribosomal protein small subunit 4 [Marsilea mollis] gi|219973378|gb|ACL68575.1| ribosomal protein small subunit 4 [Marsilea mollis] Length = 179 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 9 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 67 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 68 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 127 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 128 ESSRSNE--IPDHLSLS 142 >gi|37992437|gb|AAR06397.1| small ribosomal protein 4 [Callicostella diatomophila] Length = 198 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLINHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSEAIINKNIEFYQKM 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 196 >gi|37992481|gb|AAR06419.1| small ribosomal protein 4 [Cyclodictyon albicans] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LNRDSIGLKINELLVVEYYSR 192 >gi|58293863|gb|AAW69879.1| small ribosomal protein 4 [Matteria gracillima] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPLDFITIKDRRK 131 >gi|219973336|gb|ACL68554.1| ribosomal protein small subunit 4 [Marsilea hirsuta] Length = 178 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 8 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 66 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V Sbjct: 67 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVF 126 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 127 ESSRSNE--IPDHLSLS 141 >gi|118724465|gb|ABL10806.1| ribosomal protein small subunit 4 [Cheilanthes eatonii] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 25 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEAS 157 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V ++ Sbjct: 84 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAVKVKGE 143 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++++++ M + + + LVVE++SR Sbjct: 144 SFGRDEVPDHLTLSISKMSEPTGLVNHMANRESVNLDINELLVVEYHSR 192 >gi|32892090|gb|AAP88984.1| ribosomal protein S4 [Passiflora setacea] Length = 183 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 22/189 (11%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 9 KSPIARSAFS-------RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGP 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 KGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITV 120 Query: 144 KQKSKQLASVLEA-SQLAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN- 198 K + K + + + +P++++++ + +V + D + V +Q N Sbjct: 121 KDEPKSKDMIQNSLDSFPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINE 172 Query: 199 -LVVEFYSR 206 LVVE+YSR Sbjct: 173 LLVVEYYSR 181 >gi|32401844|gb|AAP80910.1| small ribosomal protein 4 [Lagarostrobos franklinii] Length = 216 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR + K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRVDREEEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYIRIARRAEGSTGQVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK DVI +K + + Sbjct: 71 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGLMVDIPSYRCKSKDVITIKDRQR 129 >gi|58293865|gb|AAW69880.1| small ribosomal protein 4 [Macrocoma tenuis] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNQRIVDIPSYRCKPLDFITIKDRRK 131 >gi|37992455|gb|AAR06406.1| small ribosomal protein 4 [Catharomnion ciliatum] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + K Sbjct: 92 GMSPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQRK 136 >gi|46486590|gb|AAS98731.1| ribosomal protein subunit 4 [Mniodendron fuscomucronatum] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNHVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAII 146 >gi|14090424|gb|AAK53497.1| small ribosomal protein 4 [Mitthyridium jungquilianum] Length = 182 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + +L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRXRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K +++ ++ + + Sbjct: 80 GLAPTIPGARQLVNHRHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKH 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 140 KTPTHLTFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|157689496|gb|ABV65304.1| ribosomal protein S4 [Hypericum kalmianum] Length = 184 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 101/173 (58%), Gaps = 18/173 (10%) Query: 44 KPSYFG-----LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +PSYF ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD Sbjct: 18 QPSYFKKSQYHIRLEEKQKLRFHYG-LTERQLLNYVRLAAKAKGQTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-SVLE 155 I++R TI ARQ VNHRH+ VNG VNI S+RCK GD+I V+ QKS+ + + L Sbjct: 77 ILFRLGMGSTIPQARQLVNHRHIFVNGHIVNIPSFRCKPGDIITVRDEQKSRTMVENYLN 136 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +S + +++ ++++ +I + + V ++ N LVVE+YSR Sbjct: 137 SS--SRKELSNHLTLRRFEYTGLVNQIIDT-----HRVGLKINELLVVEYYSR 182 >gi|32401842|gb|AAP80909.1| small ribosomal protein 4 [Podocarpus salignus] Length = 222 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 5/133 (3%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQ ++ +YG +++++ + A R++G T L+ Sbjct: 12 PGLTQYRRVDREKEKKSRYRIRLEEKQXVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 71 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSYRCNPKDVITIKDRQRS 130 Query: 150 LASVLEASQLAER 162 + + + L+++ Sbjct: 131 MNIINKNLDLSKK 143 >gi|15145864|gb|AAK83550.1| rps4 [Tayloria magellanica] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMSPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQK 131 >gi|74273107|gb|ABA01253.1| ribosomal protein S4 [Passiflora lindeniana] Length = 183 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQFVNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQFVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P++++ + I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEQLPKHLTFHRFQYKGLVNEIIDS-KWVGLEI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|328541122|gb|AEB21785.1| ribosomal protein S4 [Acromastigum cunninghamii] Length = 198 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK S+ + ++L KQK++ +YG ++E++ + A +++ Sbjct: 15 PGLTGKTLKSKSSHNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 74 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISINNNIVDIPSYNCEPGDII 133 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 134 TIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGS---IDQTINREWINLKINELLV 190 Query: 201 VEFYSR 206 VE+YSR Sbjct: 191 VEYYSR 196 >gi|293634097|gb|ADE60428.1| ribosomal protein subunit 4 [Polytrichastrum pallidisetum] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + +++ Sbjct: 89 GMASTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|37992671|gb|AAR06514.1| small ribosomal protein 4 [Sauloma tenella] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K++ K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKKQRKSEAIINKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 192 >gi|37548869|gb|AAO32703.1| ribosomal protein 4 [Pogonatum spinulosum] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + +A ++ SQ Sbjct: 92 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQDIIAKNIDFSQ-- 149 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ N +I L + + LVVE+YSR Sbjct: 150 KYKIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|12330534|gb|AAG52804.1| ribosomal protein 4 [Leptobryum stellatum] gi|42718114|gb|AAS38479.1| rps4 [Leptobryum stellatum] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRIHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I S RCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSDRCKPQDFIIIKDRQKSQAIISKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|118724467|gb|ABL10807.1| ribosomal protein small subunit 4 [Cheilanthes eatonii] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 26 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-LEAS 157 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V ++ Sbjct: 85 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAVKVKGE 144 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++++++ M + + + LVVE++SR Sbjct: 145 SFGRDEVPDHLTLSISKMSEPTGLVNHMANRESVNLDINELLVVEYHSR 193 >gi|37548833|gb|AAO32685.1| ribosomal protein 4 [Atrichum oerstedianum] Length = 187 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E+ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERXLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + ++ Sbjct: 85 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQEXQAIITXNIDFFQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIDLEINELLVVEYYSR 185 >gi|51860465|gb|AAU11369.1| ribosomal protein small subunit 4 [Gnetum cuspidatum] Length = 198 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 27 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 85 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+C+ DVI +K +K+ QL +++ Sbjct: 86 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCQPQDVITIKGKKTDQLKTII 145 Query: 155 --EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ E+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 146 TRNRNKAREKKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEILVIEYYSR 196 >gi|328541124|gb|AEB21786.1| ribosomal protein S4 [Acromastigum divaricatum] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK S+ + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTGKTLKSKSSHNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISINNNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGS---IDQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|37992495|gb|AAR06426.1| small ribosomal protein 4 [Diploneuron connivens] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLINHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSEAIINKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 192 >gi|18920783|gb|AAL82436.1| ribosomal protein system 4 [Pseudotaxiphyllum laetevirens] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 VPTI ARQ VNHRH+L+N V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMVPTIPGARQLVNHRHILINDCIVDIPSYRCKPQDFITIKNQRKSQAIISKNIEFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|63101085|gb|AAY33167.1| small ribosomal protein 4 [Stenodesmus tenuicuspis] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRHV+VN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHVVVNDSIVDIPSYRCKPQDFITIKNQKKYEVIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y++ N V I L + + LVVE+YSR Sbjct: 157 KIPNYLTY---NFVEKKGLINQILDRESIGLKINELLVVEYYSR 197 >gi|63101025|gb|AAY33137.1| small ribosomal protein 4 [Schoenobryum concavifolium] Length = 176 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 74 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 133 Query: 164 -VPE---YISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + S LK + LVVE+YSR Sbjct: 134 KIPNHLTYSSLEKKGLVNQILDCESIGLK-------INELLVVEYYSR 174 >gi|49182803|gb|AAT57863.1| small ribosomal protein [Symphyogyna brongniartii] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD IV+R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH++VN +V+I SY CK DVI ++ + + + + + S ER Sbjct: 93 GMAPTIPGARQLVNHRHIVVNDDTVDIPSYNCKPQDVITIRDRRESQSVITQNISLFRER 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + +I + + + LVVE+YSR Sbjct: 153 RIPNHLTFDSTRFCGSVNQI---IDREWIGLKINELLVVEYYSR 193 >gi|46810996|gb|AAT01816.1| small ribosomal protein 4 [Calycularia crispula] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ V+HRH+L+N +V+I SY C+ GDVI K + K + + ++ L ++ Sbjct: 95 GMASTIPGARQLVSHRHILINNDAVDIPSYNCEPGDVITTKDRQKSRSIITRSADLFQKP 154 Query: 163 DVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP +++ + + R I L D+ + LVVE+YSR Sbjct: 155 EVPNHLTFDLAQFRGSVNRMIDRELIDLK----INELLVVEYYSR 195 >gi|37992441|gb|AAR06399.1| small ribosomal protein 4 [Callicostella pallida] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 192 >gi|37992477|gb|AAR06417.1| small ribosomal protein 4 [Cyathophorella hookeriana] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + Sbjct: 92 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQ 134 >gi|12642262|gb|AAK00213.1| rps4 [Zygodon intermedius] Length = 190 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E+ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERPLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R+V+I YRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNHRTVDIPGYRCKPHDFITIKNRQKSQDIITKNIEFYQKY 147 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 148 KIPNHLTYN 156 >gi|17025818|gb|AAL32076.1| ribosomal protein 4 [Syrrhopodon albovaginatus] gi|17025826|gb|AAL32080.1| ribosomal protein 4 [Syrrhopodon prolifer] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+LVN R VNI SY+CK D I +K K +L+ + ++ Sbjct: 97 GLAPTIPGARQLVNHRHILVNNRIVNIPSYQCKPQDFITLKDHQKYQTRILKNINFFSKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 157 KTPNHLIFNSVEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|289599915|gb|ADD12908.1| ribosomal protein S4 [Hibbertia empetrifolia subsp. empetrifolia] Length = 165 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNH+H+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 60 FRLGMASTIPGARQLVNHKHILVNDRIVDIPSYRCKPRDIITVKDEHKSRAMIQNYLDSS 119 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 120 --PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 163 >gi|255116232|gb|ACU01168.1| small ribosomal protein subunit 4 [Sematophyllum subpinnatum] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDSMVDIPSYRCKPQDFITIKNQQKSEIIINKNIEFYQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 187 >gi|32401850|gb|AAP80913.1| small ribosomal protein 4 [Lepidothamnus intermedius] Length = 206 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL +R K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 2 PGLSEYKRVDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 60 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK DVI +K + + Sbjct: 61 QLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNDRMVDIPSYRCKPKDVIAIKDQQR 119 >gi|63101041|gb|AAY33145.1| small ribosomal protein 4 [Cyptodontopsis obtusifolia] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|118626003|emb|CAL41739.1| small ribosomal protein 4 [Lethocolea congesta] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKALKPKSSYIDHSTSNKKVSQYRIRLEEKQKLRFHYG-VTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D I++R PTI ARQ VNH H+ +N V+I SY C+ GDVI Sbjct: 67 GSTGQVLLQLLEMRPDNIIFRLXMAPTIPGARQLVNHGHISINNDIVDIPSYSCQPGDVI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + ++ L +R VP +++ + + + + ++ + + LV Sbjct: 127 SVKNKQKSQSMIIRNINLFQRLKVPGHLTFDSAELQGS---VNQTINREWIDLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|48527425|gb|AAT45845.1| small ribosomal protein 4 [Plagiochila trichostoma] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ N + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFNSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|48527379|gb|AAT45822.1| small ribosomal protein 4 [Plagiochila hakkodensis] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGISPTIPGARQLVNHRHIAINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VSQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|42556482|gb|AAS19836.1| small ribosomal protein 4 [Plagiochila asplenioides] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTLKSKSSYSDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHITINNDIVNIPSYNCEPGDII 126 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 127 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|18920757|gb|AAL82423.1| ribosomal protein system 4 [Myurella tenerrima] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQKKSEAIISKNIEFYQKY 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|46486544|gb|AAS98708.1| ribosomal protein subunit 4 [Powellia involutifolia] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRF 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 98 GVAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDGQKSQAITS 148 >gi|63101039|gb|AAY33144.1| small ribosomal protein 4 [Dendrocryphaea cuspidata] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCVVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|121761734|gb|ABM64954.1| ribosomal protein S4 [Plagiomnium rostratum] gi|121761736|gb|ABM64955.1| ribosomal protein S4 [Plagiomnium rostratum] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|48527355|gb|AAT45810.1| small ribosomal protein 4 [Plagiochila asplenioides] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYSDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHITINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|18920755|gb|AAL82422.1| ribosomal protein system 4 [Myurella julacea] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQKKSEAIISKNIEFYQKY 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|46486576|gb|AAS98724.1| ribosomal protein subunit 4 [Hypnodendron spininervium] Length = 197 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K +SK Sbjct: 95 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRSK 139 >gi|63191887|gb|AAY34903.1| small ribosomal protein subunit 4 [Weisiopsis anomala] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN +NI SY CK D I +K + K A + + +++ Sbjct: 97 GIAPTIPGARQLVNHRHILVNNSLINIPSYCCKPQDFITIKDQQKSQALITKNIDFSQKQ 156 Query: 164 -VPEYISVN 171 VP ++ N Sbjct: 157 KVPNHLIFN 165 >gi|63101043|gb|AAY33146.1| small ribosomal protein 4 [Sphaerotheciella sphaerocarpa] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|74273229|gb|ABA01314.1| ribosomal protein S4 [Adenia keramanthus] Length = 185 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 15/171 (8%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 + K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD +++ Sbjct: 22 RCKKSQYSIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNMLF 80 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQL 159 R TI ARQ VNHRH+LVN R V+I +YRCK D+I VK QKSK + AS Sbjct: 81 RLGMASTIPQARQLVNHRHILVNSRIVDIPNYRCKPRDLITVKDEQKSKDMIQNSLAS-F 139 Query: 160 AERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++++ + +V + R LK + LVVE+YSR Sbjct: 140 PQEKLPKHLTLDPLQYKGLVNQIIDRKWVGLK-------INELLVVEYYSR 183 >gi|149390270|ref|YP_001294100.1| ribosomal protein S4 [Chloranthus spicatus] gi|172048687|sp|A6MMC4|RR4_CHLSC RecName: Full=30S ribosomal protein S4, chloroplastic gi|146744190|gb|ABQ43262.1| ribosomal protein S4 [Chloranthus spicatus] Length = 201 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S G L Q R K S + ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTSKRPRS-------GSDLRNQSRFGKRSQYRIRLEEKQ 52 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ V Sbjct: 53 KLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMASTIPGARQLV 111 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDN 174 NHRH+LVN R V+I SYRCK D+I + Q+S+ L S E ++P++++++ Sbjct: 112 NHRHILVNSRIVDIPSYRCKPRDIITTRDEQRSRTLIQNHIDSSPHE-ELPKHLTLHSFQ 170 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K + + LVVE+YSR Sbjct: 171 YKGLVNQIIDS-KSIGLKI--NELLVVEYYSR 199 >gi|77862517|gb|ABB04531.1| small ribosomal protein 4 [Conocephalum conicum] Length = 201 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ ++G ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSISNKKVSQYRIRLEEKQKLRFHFG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I SY CK DVI Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNITVDIPSYNCKPKDVI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + +P ++S + + +I ++ Y I + LV Sbjct: 137 TIKDRQKSQSIITKNLKSFQKSKIPNHLSFDLIQIKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|16565391|gb|AAL26210.1|AF313610_1 small ribosomal protein 4 [Gnetum ula] Length = 193 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 11/174 (6%) Query: 40 RRKSKP----SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P S L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 22 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 80 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K QL +++ Sbjct: 81 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKIDQLKTII 140 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 141 TRNRNKARENKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 191 >gi|307602351|gb|ADN68057.1| ribosomal protein S4 [Juniperus procumbens] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K + + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQGLRNIMKK 134 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NREIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|58293889|gb|AAW69891.1| small ribosomal protein 4 [Leptodontiopsis fragilifolia] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I YRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVDIPGYRCKPQDFITIKNRQKSQDIITKNIEFYQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L D+ + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGFVNQILDRELIDLK----INELLVVEYYSR 187 >gi|219973430|gb|ACL68601.1| ribosomal protein small subunit 4 [Marsilea oligospora] Length = 186 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 16 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 74 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D+I ++ + V Sbjct: 75 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITIRNRPTSYNVLKGGVF 134 Query: 155 EASQLAERDVPEYISVN 171 E+S+ E +P+++S++ Sbjct: 135 ESSRSNE--IPDHLSLS 149 >gi|118626103|emb|CAL39353.1| small ribosomal protein 4 [Lophozia setosa] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMALTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSVITKNLNLFQKLKIPSHLTFDFTQLQGS---VNQTVNREWVDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|116010523|emb|CAL37368.1| ribosomal protein S4 [Jasminum arborescens] Length = 196 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 13/197 (6%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G KSP G L Q R K S + ++L KQK+ +YG + E + Sbjct: 6 RRLGALPGLTNKSP----KAGSDLRKQSRSRKKSQYRIRLEEKQKLCFHYG-LREYQLLK 60 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R TI AARQ V HRH+LVNGR V+ S Sbjct: 61 YVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVTHRHILVNGRIVDRPS 120 Query: 133 YRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV 189 YRCK D+I K QKS+ L + L++S +++P ++++N +I S K V Sbjct: 121 YRCKPRDIIMTKDNQKSRTLIQNSLDSS--PHKELPNHLTLNPFQYKGLVNQIIDS-KWV 177 Query: 190 PYPVIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 178 GLKI--NELLVVEYYSR 192 >gi|294337106|emb|CAQ52703.1| ribosomal protein S4 [Distichophyllum crispulum] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G + +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGV-LPGLTNKILQLKS--NSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P +++ N Sbjct: 117 ILVNNFIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|170516243|gb|ACB15123.1| small ribosomal protein 4 [Pilgerodendron uviferum] Length = 194 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG ++E++ + A R+ G T L+ LE RLD I++R Sbjct: 34 KPSKYPVRLKEKQRLRFHYG-LAERQLLQYVRIARRAEGSTGQVLLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K K Sbjct: 93 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDKQ 136 >gi|29422389|gb|AAO84590.1| small ribosomal protein 4 [Philonotis bartramioides] Length = 161 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 13/166 (7%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK + +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 2 SQYRIRLEEKQKXRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DV 164 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ + Sbjct: 61 APTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKI 120 Query: 165 PEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N + +V + R LK + LVVE+YSR Sbjct: 121 PNHLTYNSLENKGLVNQILDRESIGLK-------INELLVVEYYSR 159 >gi|78369623|gb|ABB43041.1| ribosomal protein 4 [Calymperes tahitense] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N R VNI SY+CK D I +K + K +++ + + Sbjct: 97 GIAPTIPGARQLVNHRHILINNRIVNIPSYQCKPQDFITIKDQQKYQKIMVKNVNFSPKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + L+VE+YSR Sbjct: 157 KIPSHLTFNSVEKKGLVNQI---LDQESIGLKINELLIVEYYSR 197 >gi|49182720|gb|AAT57822.1| small ribosomal protein [Herbertus sakurai] gi|49182722|gb|AAT57823.1| small ribosomal protein [Herbertus subdentatus] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCQLGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 131 TIKNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGS---INQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|289576434|dbj|BAI77791.1| ribosomal protein small subunit 4 [Hymenophyllum kuhnii] Length = 195 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E + + A +++G T L+ LE RLD IV+++ Sbjct: 31 KVSQFCVRLEAKQRLRFNYGS-TEHQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 90 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKEKIGFSRRK 149 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 150 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 193 >gi|42541369|gb|AAS19535.1| ribosomal protein small subunit 4 [Selliguea heterocarpa] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 6/163 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S F ++L AK +++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 29 SQFCVRLEAKHRLRLNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHLGL 87 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP 165 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + ++ + ++ P Sbjct: 88 ASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNALRKKFTGGDK-TP 146 Query: 166 EY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ IS++ DN V ++ + V + LVVE+YSR Sbjct: 147 DHLTISLSEDNKPTGLVNCVANRESVNLNI--NELLVVEYYSR 187 >gi|270300677|gb|ACZ69417.1| ribosomal protein S4 [Radula lindenbergiana] gi|270300679|gb|ACZ69418.1| ribosomal protein S4 [Radula lindenbergiana] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 24/215 (11%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSISIDRSMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH+H ++N +VNI SY C+ GD+I V+ + K + + L ++ ++P NH Sbjct: 112 VNHKHFVINNFTVNIPSYNCELGDIITVRNRHKSKSIITRNMNLFQKLEIP-----NHLT 166 Query: 175 MVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 +T +R S + + Y I + LVVE+YSR Sbjct: 167 FDSTQLR-GSINQRIDYNSINFKINELLVVEYYSR 200 >gi|118625967|emb|CAL39305.1| small ribosomal protein 4 [Jamesoniella undata] Length = 202 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY CK D I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNGIVDIPSYNCKPDDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIRNKEKSQSIITQNTNLFQKVKIPSHLTFDSTQLRG-FVNQTINREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|46486568|gb|AAS98720.1| ribosomal protein subunit 4 [Racopilum cuspidigerum] Length = 200 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRF 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 98 GVAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAITS 148 >gi|7576645|gb|AAF63935.1| ribosomal protein system 4 [Leskeodon cubensis] Length = 189 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN +V+I SYRCK D I +K + K A + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNFTVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKS 147 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 188 >gi|157785978|gb|ABV74163.1| small ribosomal protein 4 [Cyathophorum parvifolium] Length = 191 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVNG V+I SYRCK D I +K + Sbjct: 89 GMTPTIPGARQLVNHRHILVNGYIVDIPSYRCKPQDFITIKNQ 131 >gi|89147824|gb|ABD62760.1| ribosomal protein 4 [Cavicularia densa] Length = 177 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD I++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N +V+I SY CK D+I +K + K + + + + Sbjct: 75 GMAPTIPGARQLVNHRHILINNNTVDIPSYNCKPXDIITIKNRQKSQSIITKNLKSFQKS 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ + + F + + D + + + LVVE+YSR Sbjct: 135 QIPNHLTFD----LMQFKGLVNQKIDREFINLKINELLVVEYYSR 175 >gi|37548837|gb|AAO32687.1| ribosomal protein 4 [Dawsonia superba var. pulchra] Length = 175 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L K ++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 14 KLSXYRIRLEEKXILRFHYG-ITERQLLNYVRIARRAKGSTGQILLHLLEMRLDNIIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K ++ +++ Sbjct: 73 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQNIIVXNIDFSQKY 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ NH +I L + + LVVE+YSR Sbjct: 133 KIPNHLIFNHLERKGLVNQI---LDRESIGLKINELLVVEYYSR 173 >gi|18920785|gb|AAL82437.1| ribosomal protein system 4 [Pseudotaxiphyllum pohliicarpum] Length = 190 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPKDFITIKNQRKSEAIISKNMEFYQKS 147 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 188 >gi|63191767|gb|AAY34843.1| small ribosomal protein subunit 4 [Cyrtopodendron vieillardii] Length = 199 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 97 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNRQK 141 >gi|46811026|gb|AAT01831.1| small ribosomal protein 4 [Lepicolea attenuata] Length = 197 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 133 TIRNKEKSQSIITKNINLFQNLKIPSHLTFDSTKLRGS---ITQTINREWITLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|118626089|emb|CAL39348.1| small ribosomal protein 4 [Cephaloziella varians] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNSNLVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + + + +P +++ + + + I + + + LV Sbjct: 138 TIKNKQKSQSIISKNLNSFQKSKIPSHLTFDLRQLQGS---INQKVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|82470507|gb|ABB77336.1| ribosomal protein S4-like protein [Loxogramme abyssinica] Length = 190 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 95/166 (57%), Gaps = 8/166 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 28 KISQFCIRLEAKQRLRLNYG-LTERQLLKYVRVARKARGSTGQVSLQLLEMRLDNVIFQL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN V+I SYRCK D+I V+ + +++ S+L D Sbjct: 87 GMASTVPAARQLVNHRHILVNNCVVDIPSYRCKPKDIITVRNRPTSSNALI--SKLTRGD 144 Query: 164 -VPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ ++ DN V ++ + + + LVVE+YSR Sbjct: 145 KTPDHLTSYLSEDNKPTGLVNCIANRESIKLDI--NELLVVEYYSR 188 >gi|37992701|gb|AAR06529.1| small ribosomal protein 4 [Thamniopsis cruegeriana] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFSQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|18920731|gb|AAL82410.1| ribosomal protein system 4 [Bardunovia baicalensis] Length = 197 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + +++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKN 154 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|20531071|gb|AAM27357.1| ribosomal protein 4 [Theriotia kashmirensis] Length = 189 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 19/186 (10%) Query: 34 PGLHGQRRKSKPSYFG----------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 PGL Q + K S ++L KQK++ +YG I+E++ + A +++G Sbjct: 8 PGLTSQTPQLKSSSINASXKKISQDRIRLEEKQKLRFHYG-ITERQLLKYVRIARKAKGS 66 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI SY CK D I + Sbjct: 67 TGQVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVNERIVNIPSYHCKPQDFITI 126 Query: 144 KQKSKQLASVLEASQLAERDVPEYISVNH---DNMVATFVRIPSSLKDVPYPVIMQPNLV 200 K + K + +++ +++ Y + NH D++ + + L + + LV Sbjct: 127 KDRQKSQSIIVKNMDFSQK----YKTPNHLTFDSLEKKGL-VNQVLDRESIGLKINXLLV 181 Query: 201 VEFYSR 206 VE+YSR Sbjct: 182 VEYYSR 187 >gi|3098204|gb|AAC15550.1| small ribosomal protein 4 [Splachnum luteum] Length = 198 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNEHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 155 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLIYNSLKKQGLVNQILDRQSIGLK-------INELLVVEYYSR 196 >gi|108796748|ref|YP_636511.1| ribosomal protein S4 [Zygnema circumcarinatum] gi|90101671|sp|Q32RL5|RR4_ZYGCR RecName: Full=30S ribosomal protein S4, chloroplastic gi|61393732|gb|AAX45874.1| ribosomal protein S4 [Zygnema circumcarinatum] Length = 199 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 35/219 (15%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-----------SKPSYFG 49 MS+ + KI RR+G P+ PGL +RRK K S + Sbjct: 1 MSRYRGPRVKIVRRLG---------PL------PGLTTKRRKLTEQNKLQDKKQKKSQYR 45 Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R TI Sbjct: 46 IRLEEKQKLRFHYG-LTERQLLRYIRIARKAKGSTGQTLLQLLEMRLDNTIFRLGMAATI 104 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEY 167 AARQ VNH H+++N R V+I SYRCK D I ++ + + ++E ++ A +P + Sbjct: 105 RAARQLVNHGHIVLNERVVDIPSYRCKPNDKITIRDRDRS-RILIEKNRTARSRLRIPGH 163 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ + + T V P S+ + + +VE+YSR Sbjct: 164 LAMKQNTALITQVVDPKSI-----GLKVNELFIVEYYSR 197 >gi|37992457|gb|AAR06407.1| small ribosomal protein 4 [Chaetomitrium borneense] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-VTERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD--VIEVKQKSKQLAS 152 PTI ARQ VNHRH+LVNG V+I SYRCK D IE +QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNGCIVDIPSYRCKPQDFITIENRQKSETIIS 142 >gi|37992669|gb|AAR06513.1| small ribosomal protein 4 [Rhynchostegiopsis tunguraguana] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K Sbjct: 92 GMAPTIPGARQLVNHRHILVNNSIVDIPSYRCKPQDFITIKNKRK 136 >gi|37992501|gb|AAR06429.1| small ribosomal protein 4 [Distichophyllum pulchellum] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G + +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGV-LPGLTNKILQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V+ Sbjct: 58 LLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNFIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH---DNMVATFVRIPS- 184 I SYRCK D I +K + K + + + ++ +P +++ N+ +V + S Sbjct: 118 IPSYRCKPQDFITIKNQQKSEVIINKNIEFYQKSKIPNHLTYNYLEKKGLVNQILDCESI 177 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 LK + LVVE+YSR Sbjct: 178 GLK-------INELLVVEYYSR 192 >gi|11878079|gb|AAG40787.1| small ribosomal protein 4 [Buxbaumia aphylla] Length = 200 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T L+ E RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQILLQSSEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + + +L+++ Sbjct: 98 GIAPTIPGARQLVNHRHILVNNNIVNIPSYRCKPQDFITIKNSQKSQTIITKNIELSQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 198 >gi|67035811|gb|AAY62836.1| small ribosomal protein subunit 4 [Fabronia pusilla] Length = 198 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEVIISKNIEFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLTINELLVVEYYSR 196 >gi|67035827|gb|AAY62844.1| small ribosomal protein subunit 4 [Acroporium pungens] Length = 190 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 188 >gi|74273141|gb|ABA01270.1| ribosomal protein S4 [Passiflora tricuspis] Length = 183 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/112 (44%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGKKSQYWIRLEEKQKLRFHYG-VTERQLLKYARIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|118724479|gb|ABL10813.1| ribosomal protein small subunit 4 [Cheilanthes multifida] Length = 188 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD ++++ Sbjct: 26 KISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ + + + + + Sbjct: 85 NMASTIPAARQLVNHRHILVNRRIVDIPSYRCKPKDIITIRNRLTSYNAA-KGKSIGRDE 143 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ + + V ++ + V + LVVE++SR Sbjct: 144 VPDHLTLSISKTSELTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|89147832|gb|ABD62764.1| ribosomal protein 4 [Metzgeria furcata] Length = 198 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 15 PGLTSKTFKSKSSYIDKPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 74 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 133 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 +K + + ++++E + L + +P +++ + + + R I D+ + L Sbjct: 134 TIKNQERYRSNIMERLNSLQKPGIPNHLAFDSTKFIGSVNRMINREWIDLK----INELL 189 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 190 VVEYYSR 196 >gi|48527411|gb|AAT45838.1| small ribosomal protein 4 [Plagiochila retrospectans] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K +++ + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSAITKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|14090434|gb|AAK53502.1| small ribosomal protein 4 [Syrrhopodon banksii] Length = 182 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K Q V + +++ Sbjct: 80 GLAPTIPGARQLVNHRHILVNNHMVNIPSYQCKPQDFINIKDQQKYQTMIVKNTNFFSKQ 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 140 KTPNHLIFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 180 >gi|67035847|gb|AAY62850.1| small ribosomal protein subunit 4 [Pterogoniopsis cylindrica] Length = 199 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 197 >gi|51860475|gb|AAU11374.1| ribosomal protein small subunit 4 [Gnetum leptostachyum] Length = 198 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 11/173 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 28 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 86 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ Sbjct: 87 LDNILYRLDLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTII 146 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 ++ R+ +P +++++ +I KD+ + + LV+E+YS Sbjct: 147 TRNRNKARENKIPYHLTLDLSQKKGIVNKIIDR-KDIQLNI--KEMLVIEYYS 196 >gi|328541040|gb|AEB21744.1| ribosomal protein S4 [Kurzia dendroides] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ + KI RR+G L G +PKS N RS K S + ++L Sbjct: 1 MSRYRGPRVKIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEE 51 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T + LE RLD ++R TI ARQ Sbjct: 52 KQKLRFHYG-LTERQSLKYVRIARKAKGSTGQVSLQLLEMRLDNTIFRLGMASTIPGARQ 110 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 VNHRH+ +N V+I SY C+ GD+I +KQK K + + + L + +P +++ + Sbjct: 111 LVNHRHIPINNNIVDIPSYNCEPGDIITIKQKQKSQSVITKNINLFQNLKIPSHLTFDSI 170 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + I ++ + + LVVE+YSR Sbjct: 171 KLCGS---INQTINRESIDLKINELLVVEYYSR 200 >gi|74273247|gb|ABA01323.1| ribosomal protein S4 [Malesherbia linearifolia] Length = 187 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 14 GSAFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGRVLLQLL 72 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD ++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKSK + Sbjct: 73 EMRLDNTLFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRCKPRDLITAKDEQKSKDM 132 >gi|18920779|gb|AAL82434.1| ribosomal protein system 4 [Platydictya jungermannioides] Length = 194 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKN 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|289599925|gb|ADD12913.1| ribosomal protein S4 [Hibbertia hermanniifolia] Length = 163 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 60 LSMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS-- 117 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 118 PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 161 >gi|51860567|gb|AAU11420.1| ribosomal protein small subunit 4 [Ephedra distachya] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 22/204 (10%) Query: 21 GRPKSPVNTR-SYGPGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISE 67 G P+S + R PGL +R R S+P + + + L+ KQK++ +YG ++E Sbjct: 1 GGPRSKIIRRLKTLPGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTE 59 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ R A ++G T L+ LE RLD I++R TI ARQ VNHRH+LVN Sbjct: 60 RQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHI 119 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRI 182 V+I SYRCK D+I +K K + + + VP Y++ N +I Sbjct: 120 VDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + KD+ + + LV+E+YSR Sbjct: 180 IDT-KDLQLKI--KEMLVIEYYSR 200 >gi|294337096|emb|CAQ52698.1| ribosomal protein S4 [Cryphaea amurensis] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|289599905|gb|ADD12903.1| ribosomal protein S4 [Hibbertia conspicua] Length = 163 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 23/174 (13%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK KS+ L S L Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSSLH 119 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 E ++P+++++ P K + +I + LVVE+YSR Sbjct: 120 E-ELPKHLALQ-----------PFQYKGLVNQIIDSKWIGLKINELLVVEYYSR 161 >gi|121761757|gb|ABM64965.1| ribosomal protein S4 [Plagiomnium undulatum] gi|121761779|gb|ABM64976.1| ribosomal protein S4 [Plagiomnium undulatum] Length = 195 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLKKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|118625933|emb|CAL39288.1| small ribosomal protein 4 [Jamesoniella purpurascens] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNGIVDIPSYNCEPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P ++ + + FV + + V + LV Sbjct: 138 TIRNKQKSQSIITKNTNLFQKVKIPSHLIFDSTQLRG-FVNQTINREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|42556416|gb|AAS19803.1| small ribosomal protein 4 [Gottschea nuda] Length = 191 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R V TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMVTTIPGARQLVNHRHILINNNIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF-VRIPSSLKDVPYPVIMQPNL 199 +K K + + L ++ +P +++ + + RI ++ + L Sbjct: 127 AIKNNKKSQSMITRNLNLLQKFKIPNHLTFDSTQLQGLVNQRIHREFINLK----INELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|118626079|emb|CAL39343.1| small ribosomal protein 4 [Delavayella serrata] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ + KI RR+G L G +PKS RS K S + ++L Sbjct: 1 MSRYRGPRVKIIRRLGA-LPGLTSKVLKPKSSYIDRSTS--------NKKVSQYRIRLEE 51 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ Sbjct: 52 KQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQ 110 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHD 173 VNHRH+ +N V+I SY C+ GD+I VK K K + + + L ++ +P ++ + Sbjct: 111 LVNHRHISINNDIVDIPSYNCEPGDIITVKNKQKSQSIITKNINLFQKSKIPSHLIFDST 170 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + + ++ + + LVVE+YSR Sbjct: 171 NLSGS---VNQTINRESINLKINELLVVEYYSR 200 >gi|67035845|gb|AAY62849.1| small ribosomal protein subunit 4 [Aptychopsis pyrrophylla] Length = 187 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 144 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 185 >gi|328541130|gb|AEB21789.1| ribosomal protein S4 [Telaranea wallichiana] Length = 202 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKPKSSYNDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNNIVDIPSYNCEPGDVI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P ++ + + + I ++ + + LV Sbjct: 138 TIKDKQKSRSIITKNINLFQNLKIPSHLIFDSIKLCGS---INQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|37683546|gb|AAQ98824.1| small ribosomal protein 4 [Pogonatum tortile] Length = 174 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 13 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SYRCK D I K + + A + + +++ Sbjct: 72 GMAPTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITRKNRQESQAIIAKNIDFSQKY 131 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 132 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 172 >gi|328541100|gb|AEB21774.1| ribosomal protein S4 [Bazzania involuta] Length = 197 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 95 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNL 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 155 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 195 >gi|190361245|gb|ACE76927.1| ribosomal protein small subunit 4 [Abrodictyum elongatum] Length = 167 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 16/165 (9%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV++ Sbjct: 15 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN V+I SYRCK D+I ++ + E+S+ + Sbjct: 74 GMAPTIPAARQLVNHRHILVNNNIVDIPSYRCKPKDLITLRSR--------ESSR---KK 122 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S + N + V ++ + + + LVVE+YSR Sbjct: 123 IPDHLMLSSSEGNRLTGLVNEIANRESIELNI--NELLVVEYYSR 165 >gi|323141381|ref|ZP_08076272.1| ribosomal protein S4 [Phascolarctobacterium sp. YIT 12067] gi|322414130|gb|EFY04958.1| ribosomal protein S4 [Phascolarctobacterium sp. YIT 12067] Length = 197 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 9/171 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +R+ K S +G+QL KQK K YG + EK+FR + +A + G T NL+ LE R+D Sbjct: 33 RRQNRKKSEYGIQLTEKQKAKFIYG-VLEKQFRGYYDKAKKMEGITGENLLILLERRIDN 91 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS--KQLASVLEA 156 +V+R T ARQ V H H+ VNG+ ++I S + GDV+ V + S K+ ++ Sbjct: 92 VVFRLGLANTRRQARQIVRHGHIAVNGKRLDIPSALVRVGDVVTVMENSRAKEYFKGMDE 151 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPNLVVEFYSR 206 + LA + VP ++ ++ N+ R P+ + DVP ++ + +VE YS+ Sbjct: 152 T-LATKAVPAWLVLDAANVSGKVDRFPTREEIDVP----IEEHFIVELYSK 197 >gi|289576426|dbj|BAI77787.1| ribosomal protein small subunit 4 [Hymenophyllum bivalve] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 25 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 84 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 143 Query: 163 DVPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ + DN+ V ++ + + + LVVE+YSR Sbjct: 144 KIPDHLTFFFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 187 >gi|170516215|gb|ACB15109.1| small ribosomal protein 4 [Callitris preissii] Length = 195 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 R+ P L + KPS + +L+ KQK++ +YG +SE++ + A R+ G T L+ Sbjct: 21 RNEQPFLKKHFKPLKPSKYLERLKEKQKLRFHYG-LSERQLLQYVRIARRAEGSTGQVLL 79 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D I +K K Sbjct: 80 QLLEMRLDNILFRLGMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQ 137 >gi|41323083|gb|AAR99771.1| small ribosomal protein 4 [Herbertus subdentatus] Length = 188 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 5 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 64 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 123 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVN----HDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + H ++ T R +LK + Sbjct: 124 TIKNKQKSQSIITKNISLFQKFKIPSHLTFDSTKLHGSINQTINREWINLK-------IN 176 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 177 ELLVVEYYSR 186 >gi|14090448|gb|AAK53509.1| small ribosomal protein 4 [Octoblepharum albidum] Length = 182 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-LTEQQLLNYMRIARKAKGSTGQVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHR++LVN VNI SYRCK DVI +K + +++ + ++ Sbjct: 80 GMAPTIPGARQLVNHRYILVNNCIVNIPSYRCKPHDVITIKDRQSSQKMIVKNVEFFQKY 139 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 140 KIPNHLSFNALEKKGLVKQI---LDQEFVGLKINELLVVEYYSR 180 >gi|18027950|gb|AAL55899.1| ribosomal protein S4 [Taenitis interrupta] Length = 190 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%) Query: 34 PGLHGQRRKSKP---------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S P S F ++L KQK++ YG ++E++ + A Sbjct: 4 PGLTGKDKTSNPGDFRVASEQSASKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRCK Sbjct: 63 KTKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKCIVDIPSYRCKPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 D+I ++++ + + + +P++++++ + + + Sbjct: 123 DIITIRKRP--IFHTVAKDEFIRDGIPDHLTLSFSKAGEQVGLVNHMASRESVDLEINEL 180 Query: 199 LVVEFYSR 206 LVVEFYSR Sbjct: 181 LVVEFYSR 188 >gi|58293907|gb|AAW69900.1| small ribosomal protein 4 [Codonoblepharon pungens] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPKDSITIKNRKK 131 >gi|20531124|gb|AAM27382.1| ribosomal protein 4 [Hedwigia ciliata] Length = 194 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 92 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLQKKGLVNQI---LDRELIGLKINELLVVEYYSR 192 >gi|289599921|gb|ADD12911.1| ribosomal protein S4 [Hibbertia goyderi] Length = 165 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 23/176 (13%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 1 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIL 59 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNH+H+LVN R V+I SYRCK D+I VK KS+ L S Sbjct: 60 FRLGMASTIPGARQLVNHKHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNFLDSS 119 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI------MQPN--LVVEFYSR 206 L + + P+++++ P K + +I +Q N LVVE+YSR Sbjct: 120 LHD-EFPKHLTLQ-----------PFQYKGLVNQIIDSKWIGLQINELLVVEYYSR 163 >gi|157689456|gb|ABV65284.1| ribosomal protein S4 [Crossosoma californicum] Length = 193 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 9/174 (5%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 24 LRNQARPVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMR 82 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLA-S 152 LD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + QKS+ L + Sbjct: 83 LDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPQDIITARNEQKSRTLIKN 142 Query: 153 VLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L++S ++P+++++ +I S K V + LVVE+YSR Sbjct: 143 YLDSS--PHEELPKHLTLRPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 191 >gi|42556518|gb|AAS19854.1| small ribosomal protein 4 [Wiesnerella sp. He-Nygren 777] Length = 177 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 TI ARQ VNHRH+L+N +V+I SY CK DVI +K +SK + + + + ++ Sbjct: 75 GMTSTIPGARQLVNHRHILINNNTVDIPSYNCKPKDVITIKDRSKSQSIITKNLNSFQKQ 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ + + I + + D + + + LVVE+YSR Sbjct: 135 KIPNHLAFD----LMQIKGIVNQIIDREWISLKINELLVVEYYSR 175 >gi|18027936|gb|AAL55892.1| ribosomal protein S4 [Actiniopteris australis] Length = 191 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD I++R Sbjct: 29 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ ++ +V + + Sbjct: 88 GMASTIPAARQLVNHRHILVNYRIVDIPSYRCKPRDIITIRNRTTS-HNVSKVESIPGGG 146 Query: 164 VPEYISVNHDNM--VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++++ +A V ++ + + + LVVE+YSR Sbjct: 147 IPDHLTLSFSKTGELAGLVNHMANRESIDLDI--NELLVVEYYSR 189 >gi|12330552|gb|AAG52813.1| ribosomal protein 4 [Calomnion complanatum] Length = 185 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK + +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKSRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 83 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKY 142 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 183 >gi|63101073|gb|AAY33161.1| small ribosomal protein 4 [Phyllodon truncatulus] Length = 198 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNRRKSETIISKNIEFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N A I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNFLEKKALVNEI---LDRESIGLKINELLVVEYYSR 196 >gi|289576404|dbj|BAI77776.1| ribosomal protein small subunit 4 [Hymenophyllum cupressiforme] gi|289576428|dbj|BAI77788.1| ribosomal protein small subunit 4 [Hymenophyllum pumilum] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 25 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 84 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 143 Query: 163 DVPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ + DN+ V ++ + + + LVVE+YSR Sbjct: 144 KIPDHLTFFFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 187 >gi|164597809|ref|NP_084669.2| ribosomal protein S4 [Oenothera elata subsp. hookeri] gi|169142699|ref|YP_001687126.1| ribosomal protein S4 [Oenothera argillicola] gi|169142849|ref|YP_001687272.1| ribosomal protein S4 [Oenothera glazioviana] gi|169142934|ref|YP_001687356.1| ribosomal protein S4 [Oenothera biennis] gi|169143020|ref|YP_001687440.1| ribosomal protein S4 [Oenothera parviflora] gi|172045788|sp|Q9MTP1|RR4_OENEH RecName: Full=30S ribosomal protein S4, chloroplastic gi|159792937|gb|ABW98693.1| ribosomal protein S4 [Oenothera argillicola] gi|159793107|gb|ABW98861.1| ribosomal protein S4 [Oenothera biennis] gi|159895461|gb|ABX10026.1| ribosomal protein S4 [Oenothera glazioviana] gi|159895546|gb|ABX10110.1| ribosomal protein S4 [Oenothera parviflora] gi|162423676|emb|CAB67134.2| ribosomal protein S4 [Oenothera elata subsp. hookeri] Length = 203 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 13/166 (7%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 42 SQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNILFRLGM 100 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAER 162 TI ARQ VNHRH+LVNGR V+I SYRCK D+I K QKSK + + LE+ Sbjct: 101 ASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDDQKSKAMIQNSLESP--PHE 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +VP++++ H V + + D + V ++ N LVVE+YSR Sbjct: 159 EVPKHLTF-HPFQYKGLV---NQIIDSEW-VGLKINELLVVEYYSR 199 >gi|48527361|gb|AAT45813.1| small ribosomal protein 4 [Plagiochila bicuspidata] Length = 202 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSK SY + Sbjct: 1 MSRYRGPRXKIIRRLGT---------------LPGLTSKTLKSKSSYIDRSTLNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEY 167 I ARQ VNHRH+ +N V+I SY C+ GD+I +K K K + V + + + +P + Sbjct: 105 IPGARQLVNHRHISLNNDIVDIPSYNCEPGDIITIKNKQKSQSIVTKNINSFQKLKIPSH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + + + + LVVE+YSR Sbjct: 165 LTFDSTQLQGS---VNQMINREWINLKINELLVVEYYSR 200 >gi|222103534|gb|ACM44296.1| small ribosomal protein subunit 4 [Leucodon pendulus] Length = 203 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 160 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 161 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 201 >gi|156598520|gb|ABU85518.1| ribosomal protein S4 [Passiflora biflora] Length = 198 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 10/152 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP ++ R + S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKSPRVGSAFS-------RSGRKSQYCMRLEEKQKLRF 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 54 HYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +LVN R V+I SYRCK D+I VK QKSK + Sbjct: 113 ILVNNRMVDIPSYRCKPRDLITVKDEQKSKDM 144 >gi|26399166|sp|Q9FS90|RR4_SPLSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|10798708|emb|CAC12833.1| small ribosomal protein 4 [Splachnum sphaericum] Length = 202 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNEHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKY 159 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLIYNSLKKQGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|51458195|gb|AAU03444.1| ribosomal protein small subunit 4 [Asplenium praemorsum] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 22 QSTSRKTSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++R TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 81 VLFRLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSL 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 VGDK-TPDHLTVSLAEGDKPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|51860459|gb|AAU11366.1| ribosomal protein small subunit 4 [Gnetum ula] Length = 196 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 11/174 (6%) Query: 40 RRKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 RR S+P + + L+ KQK++ ++G ++E++ R + + +G T L+ LE R Sbjct: 25 RRSSRPWWKKSRHLACLQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMR 83 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVL 154 LD I+YR TI ARQ VNHRH+LVN VNI SY+CK DVI +K +K QL +++ Sbjct: 84 LDNILYRLGLAGTIPGARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKIDQLKTII 143 Query: 155 EASQLAERD--VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ R+ +P +++++ +I KD+ + + LV+E+YSR Sbjct: 144 TRNRNKARENKIPYHLTLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYYSR 194 >gi|307602283|gb|ADN68023.1| ribosomal protein S4 [Juniperus californica] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I +K K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDLISIKDKQ 126 >gi|295065730|ref|YP_003587670.1| ribosomal protein S4 [Anomochloa marantoidea] gi|251765254|gb|ACT15408.1| ribosomal protein S4 [Anomochloa marantoidea] Length = 201 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 19/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G + +RS L Q + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTRKTPKSRS---NLQNQLQSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN---HDNM 175 +LVNGR V+I S+RCK D+I K Q+SK+L AS +P +++++ + + Sbjct: 116 ILVNGRIVDIPSFRCKPQDIITTKDNQRSKRLIQNSIASS-DRMQLPNHLTIDTLQYKGL 174 Query: 176 VATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + R LK + LVVE+YSR Sbjct: 175 VKKIIARKWIGLK-------INELLVVEYYSR 199 >gi|121761875|gb|ABM65023.1| ribosomal protein S4 [Plagiomnium maximoviczii] Length = 195 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|78102689|gb|ABB21558.1| small ribosomal protein 4 [Plagiochila maderensis] Length = 173 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ FLE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQFLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNM 175 ++ K K + V + + + +P +++ N + Sbjct: 131 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFNSTQL 165 >gi|307602285|gb|ADN68024.1| ribosomal protein S4 [Juniperus chinensis] gi|307602307|gb|ADN68035.1| ribosomal protein S4 [Juniperus excelsa] gi|307602317|gb|ADN68040.1| ribosomal protein S4 [Juniperus gaussenii] gi|307602347|gb|ADN68055.1| ribosomal protein S4 [Juniperus polycarpos] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQ 126 >gi|305672191|gb|ADM63519.1| ribosomal protein S4 [Delarbrea harmsii] Length = 173 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + +Q + Sbjct: 79 EMRLDNILFRLGMATTIPGARQLVNHRHILVNGGIVDIPSYRCKPRDIITA--RDEQNSR 136 Query: 153 VLEASQL---AERDVPEYISVN 171 VL + L + ++P++++++ Sbjct: 137 VLIQNSLDSSSHEELPKHLTLH 158 >gi|74273119|gb|ABA01259.1| ribosomal protein S4 [Passiflora lobbii subsp. obtusiloba] Length = 183 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGQTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|18028018|gb|AAL55933.1| ribosomal protein S4 [Jamesonia verticalis] Length = 191 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 6 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 60 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 61 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 120 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I ++ + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 121 PKDIITIRNRPI-FHNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 178 Query: 195 MQPNLVVEFYSR 206 VVEFYSR Sbjct: 179 -NELFVVEFYSR 189 >gi|6002041|emb|CAA58929.1| ribosomal protein S4 [Cyperus vegetus] Length = 199 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 4/135 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R+K KP + ++L KQK++ +YG ++E++ A +S+G T L+ LE RLD I Sbjct: 42 RKKKKP--YRIRLEEKQKIRFHYG-LTERQLVRYIHIAGKSKGSTGQVLLQLLEMRLDNI 98 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQ 158 ++R TI ARQ VNHRH+LVNG V+I SYRCK D+I +K + V ++ + Sbjct: 99 LFRLGMASTIPGARQLVNHRHILVNGHIVDIPSYRCKPRDIITIKDNERSFDLVKKSIAS 158 Query: 159 LAERDVPEYISVNHD 173 A+ +P++++++ + Sbjct: 159 SAQNKLPKHLTISKN 173 >gi|67035781|gb|AAY62821.1| small ribosomal protein subunit 4 [Cryphaea patens] Length = 198 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 155 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNXILDRESIGLK-------INELLVVEYYSR 196 >gi|289599854|gb|ADD12878.1| ribosomal protein S4 [Acrotrema costatum] Length = 163 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L++S Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS-- 117 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 118 PHEELPKHLTLHTFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 161 >gi|110456717|gb|ABG74820.1| ribosomal protein S4 [Jasminum subhumile] Length = 203 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP G L Q R K S + ++L KQK+ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKSP----KAGSDLRKQSRSRKKSQYRIRLEEKQKLCF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG + E + + A +++G T L+ LE RLD I++R TI AARQ V HRH Sbjct: 57 HYG-LREYQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVTHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVA 177 +LVNGR V+ SYRCK D+I K QKS+ L + L++S +++P +++++ Sbjct: 116 ILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTLIQNSLDSS--PHKELPNHLTLHPFQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|14090462|gb|AAK53516.1| small ribosomal protein 4 [Macromitrium incurvifolium] Length = 182 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLXYIRIARKAKGSTGEVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 80 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPLDFITIKDRRK 124 >gi|170516231|gb|ACB15117.1| small ribosomal protein 4 [Microcachrys tetragona] Length = 221 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 19/178 (10%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK + +YG +++++ + A R++G T L+ Sbjct: 12 PGLTKYRRVDREKEKKSQYRIRLEEKQKCRFHYG-LTDRQLLRYVRIARRAKGSTGQVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK----- 144 LE RLD I++R TI ARQ +NHRH+LVNGR V+I SYRC DVI +K Sbjct: 71 QLLEMRLDNILFRLGMTFTIPGARQLINHRHILVNGRIVDIPSYRCNPKDVITIKDQQRS 130 Query: 145 ----QKSKQLASVLEASQLAERDVPEYIS---VNHDNMVATFVRIPSSLKDVPYPVIM 195 K++ L+ +A + ER P IS +N N++ + +VP+ +I+ Sbjct: 131 RNIINKNRDLSKKHQAKKHQERLRP--ISKRIINRKNILFFKFKKREMKHEVPFHLIL 186 >gi|53830736|gb|AAU95217.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830738|gb|AAU95218.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830740|gb|AAU95219.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830742|gb|AAU95220.1| small ribosomal protein 4 [Syrrhopodon banksii] Length = 177 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K Q V + +++ Sbjct: 75 GLAPTIPGARQLVNHRHILVNNHMVNIPSYQCKPQDFINIKDQQKYQTMIVKNTNFFSKQ 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 135 KTPNHLIFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 175 >gi|67035839|gb|AAY62846.1| small ribosomal protein subunit 4 [Schroeterella zygodonta] Length = 191 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 189 >gi|78778790|ref|YP_396902.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9312] gi|90101704|sp|Q31CC9|RS4_PROM9 RecName: Full=30S ribosomal protein S4 gi|78712289|gb|ABB49466.1| SSU ribosomal protein S4P [Prochlorococcus marinus str. MIT 9312] Length = 202 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + + +S PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVTRRLGE-LPGLTRK-ASKKSNPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K+A G T NL+ LE+RLD + +R F TI +RQ VNH H Sbjct: 58 NYG-VSEKQLVRYVKKARAQEGSTGTNLLRLLENRLDNVCFRLGFGGTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNG+ ++I Y+CK GDVI +K+ SK+L +E LA +VP ++ ++ + Sbjct: 117 VTVNGKVLDIAGYQCKSGDVIGIKENKASKKLVEGNIEFPGLA--NVPPHLDLDKPKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 175 ---KITGKCDREWVALEINELLVVEYYSR 200 >gi|294337283|emb|CAQ52790.1| ribosomal protein S4 [Trachyloma planifolium] Length = 202 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGA-LPGLTNKTSQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K A + + + ++ +P Y S+ +V Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLIYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIDLK-------INELLVVEYYSR 200 >gi|29422403|gb|AAO84597.1| small ribosomal protein 4 [Philonotis vescoana] Length = 139 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 15 KISQYRIRLEENQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 74 GMAPTIPGARQLVNHRHILVNNRIVDIPSYRCKPQDFITIKDRQKSQAII 123 >gi|46486558|gb|AAS98715.1| ribosomal protein subunit 4 [Bescherellia elegantissima] Length = 198 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 96 GMAPTIPGARQLVNHRHILVNNCIVDIASYRCKPQDFITIKDRQKSQAII 145 >gi|66866241|gb|AAY57789.1| small ribosomal protein 4 [Antitrichia californica] Length = 207 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 100 GMAPTIPGARQLVNHRHILVNNCIVDIASYRCKPQDFITIKDRQKSQAII 149 >gi|63191728|gb|AAY34824.1| small ribosomal protein subunit 4 [Plagiopus oederi] Length = 192 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 15/169 (8%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDRMVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 149 Query: 163 DVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ N + +V + S + ++ N LVVE+YSR Sbjct: 150 KIPNHLTYNSLENKGLVNQILDRES--------IGLKTNELLVVEYYSR 190 >gi|74273139|gb|ABA01269.1| ribosomal protein S4 [Passiflora talamancensis] Length = 183 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNNRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|74273169|gb|ABA01284.1| ribosomal protein S4 [Passiflora tulae] Length = 183 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNNRMVDIPSYRCKPRDLITVKDEQKSKDMIK------ 131 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 S +N+ + P K + +I + LV+E+YSR Sbjct: 132 ------KSLDSFPQNNLPTHLILYPKKYKGLVTQIIDSKCLGLKINELLVIEYYSR 181 >gi|74273117|gb|ABA01258.1| ribosomal protein S4 [Passiflora helleri] Length = 183 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNNRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|157689532|gb|ABV65322.1| ribosomal protein S4 [Oxalis latifolia] Length = 201 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P S+ Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKPNAVNSF----RNQSRLGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGPTGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVA 177 V VNGR V+I SYRCK D I + + K A + L++S ++P+++++ Sbjct: 116 VFVNGRVVDIPSYRCKPRDFITPRNEQKSRALIRNYLDSS--THEELPKHLTLYPLQCKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 174 LVNQIIDS-KWVGLKI--NELLVVEYYSR 199 >gi|15021384|gb|AAK77665.1| small ribosomal protein 4 [Sphagnum tenerum] Length = 188 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK Y + L KQK++ +YG I+E++ + A R++ Sbjct: 5 PGLTSKTPQSKSXYIXQPISNKKVSQYRXXLEEKQKLRFHYG-ITERQLLKYVRIARRAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RL +++R PTI ARQ VNHRH+LVN +VNI SYRCK D I Sbjct: 64 GSTGQVLLQLLEMRLXNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPSYRCKPQDFI 123 Query: 142 EVKQKSKQLASV 153 +K + K A + Sbjct: 124 TIKDRQKSQAII 135 >gi|5911468|emb|CAA58928.1| ribosomal protein S4 [Cycas revoluta] Length = 196 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 13/150 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R KS K S + ++ KQK+ +YG ++E++ + A R++G Sbjct: 19 PGLTNKRPKSRNVPTNQSSSRKISQYRIRPEEKQKLPFHYG-LTERQLLKYVRIAGRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK DVI Sbjct: 78 STGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRHILVNDRVVDIPSYRCKPRDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVN 171 + + + A + + L+++D +P +++++ Sbjct: 138 IIDQRRSRAMIGKNLDLSQKDQMPNHLTLH 167 >gi|3098216|gb|AAC15556.1| small ribosomal protein 4 [Aulacomnium androgynum] Length = 191 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 89 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSEAII 138 >gi|67035851|gb|AAY62852.1| small ribosomal protein subunit 4 [Colobodontium vulpinum] Length = 199 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQQKSEIIINKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 197 >gi|74273143|gb|ABA01271.1| ribosomal protein S4 [Passiflora trifasciata] Length = 185 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGQTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDMIK------ 131 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 S +N+ + P K + +I + LV+E+YSR Sbjct: 132 ------KSLDSFPRNNLPTHLILYPQKYKGLVTQIIDSKCLGLKINEFLVIEYYSR 181 >gi|37992499|gb|AAR06428.1| small ribosomal protein 4 [Distichophyllidium nymanianum] Length = 194 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQQKSEAIINKNIEFYQKY 151 Query: 163 DVPEYISVN---HDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + S LK + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQILDCESIGLK-------INELLVVEYYSR 192 >gi|7576611|gb|AAF63918.1| ribosomal protein system 4 [Sematophyllum demissum] Length = 190 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNFLEKKGLINQI---LDRESIDLKINELLVVEYYSR 189 >gi|67035855|gb|AAY62854.1| small ribosomal protein subunit 4 [Meiothecium chlorocladum] Length = 179 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 18 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 77 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQQKSEIIINKNIEFYQKS 136 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 137 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 177 >gi|63101037|gb|AAY33143.1| small ribosomal protein 4 [Cyptodon muelleri] Length = 198 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 155 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|74273167|gb|ABA01283.1| ribosomal protein S4 [Passiflora murucuja] Length = 183 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNNRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|125662700|gb|ABN50300.1| small ribosomal protein 4 [Cunninghamia lanceolata var. konishii] Length = 197 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 23/171 (13%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 36 YPVRLKEKQKLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 94 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL----EASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K K + L +++ E Q +R Sbjct: 95 TIPEARQLVNHRHILVNDRLVDIPSYRCKPQDLISIKDKQR-LRNLIYKNREIFQKEKRR 153 Query: 164 VPEYISV-----NHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++ + +V + RI + ++ LVVE+YSR Sbjct: 154 VPPHLNLIKKKSQYIGLVKKIIDSNRISLKINEL---------LVVEYYSR 195 >gi|51458205|gb|AAU03449.1| ribosomal protein small subunit 4 [Asplenium polyodon] Length = 189 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 22 QSTSRKTSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ PTI AARQ VNHRH+LVN V+I SYRCK D I V+ + + L Sbjct: 81 VLFHLGMAPTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTS-CNALRKKS 139 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 140 LVGGKTPDHLTVSLAEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|46486560|gb|AAS98716.1| ribosomal protein subunit 4 [Bescherellia cryphaeoides] Length = 195 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 93 GMAPTIPGARQLVNHRHILVNNCIVDIASYRCKPQDFITIKDRQKSQAII 142 >gi|67035853|gb|AAY62853.1| small ribosomal protein subunit 4 [Hydropogon fontinaloides] Length = 195 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQQKSEILINKNIEFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 193 >gi|63100967|gb|AAY33108.1| small ribosomal protein 4 [Stoneobryum mirum] Length = 202 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P S L + K S + ++L KQK++ +YG I+E++ Sbjct: 10 KIIRRLGVLPGLTNKTPQLKSSSANQLTSNK---KISQYRIRLEEKQKLRFHYG-ITERQ 65 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH++VN R V+ Sbjct: 66 LLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIIVNHRIVD 125 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVN 171 I SYRCK D I +K + K + + ++ +P +++ N Sbjct: 126 IPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKSKIPNHLTYN 168 >gi|37992485|gb|AAR06421.1| small ribosomal protein 4 [Daltonia gracilis] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQQKSEVIINKNIEFYQKS 151 Query: 164 -VPEYISVN---HDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + S LK + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQILNCESIGLK-------INELLVVEYYSR 192 >gi|15145822|gb|AAK83529.1| rps4 [Splachnum ampullaceum] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + S Sbjct: 87 GXAPTIPGARQLVNHRHILVNERIVDIPSYRCKPQDFITIKDRQKSQXIIS 137 >gi|12642238|gb|AAK00201.1| rps4 [Gigaspermum repens] Length = 192 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +++ Sbjct: 90 GMALTIPEARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKDRQKSQAMITKNIDFSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 150 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|219973324|gb|ACL68548.1| ribosomal protein small subunit 4 [Marsilea ancylopoda] Length = 170 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 7/131 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD IV++ Sbjct: 5 KISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDNIVFQL 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ----LASVLEASQL 159 PTI AARQ VNHRH+LVN R V++ SYRC+ D+I V+ + V E+S+ Sbjct: 64 GLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSNNVLKGGVFESSRS 123 Query: 160 AERDVPEYISV 170 E +P+++S+ Sbjct: 124 NE--IPDHLSL 132 >gi|46486556|gb|AAS98714.1| ribosomal protein subunit 4 [Hypnodendron vitiense] Length = 199 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 TI ARQ VNHRH+LVN R V+I SYRCK D I +K +SK A + Sbjct: 97 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRSKSQAII 146 >gi|67035849|gb|AAY62851.1| small ribosomal protein subunit 4 [Sematophyllum demissum] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNFLEKKGLINQI---LDRESIDLKINELLVVEYYSR 189 >gi|290467483|gb|ADD25859.1| small ribosomal protein 4 [Hymenophyllum revolutum] Length = 187 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GISATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 141 Query: 163 DVPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ + DN+ V ++ + + + LVVE+YSR Sbjct: 142 KIPDHLTFFFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 185 >gi|290467471|gb|ADD25853.1| small ribosomal protein 4 [Hymenophyllum feejeense] Length = 179 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 15 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 74 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 133 Query: 163 DVPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ + DN+ V ++ + + + LVVE+YSR Sbjct: 134 KIPDHLTFFFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 177 >gi|53830734|gb|AAU95216.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830744|gb|AAU95221.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830746|gb|AAU95222.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830748|gb|AAU95223.1| small ribosomal protein 4 [Syrrhopodon banksii] gi|53830750|gb|AAU95224.1| small ribosomal protein 4 [Syrrhopodon borneensis] gi|53830752|gb|AAU95225.1| small ribosomal protein 4 [Syrrhopodon borneensis] gi|53830754|gb|AAU95226.1| small ribosomal protein 4 [Syrrhopodon borneensis] Length = 177 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K Q V + +++ Sbjct: 75 GLAPTIPGARQLVNHRHILVNNHMVNIPSYQCKPQDFITIKDQQKYQTMIVKNTNFFSKQ 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 135 KTPNHLIFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 175 >gi|42556478|gb|AAS19834.1| small ribosomal protein 4 [Pedinophyllum truncatum] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTFKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNGIVDIPSYNCEPGDTI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 127 TIRNKQRSQSIITKNTNLFQKIKIPSHLTFDLTQLRG-FVNQTVNREWVNLKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|11121111|emb|CAC14742.1| ribosomal protein subunit 4 [Bescherellia brevifolia] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 89 GMAPTIPGARQLVNHRHILVNNCIVDIASYRCKPQDFITIKDRQKSQAII 138 >gi|74273135|gb|ABA01267.1| ribosomal protein S4 [Passiflora sexflora] Length = 183 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGRTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPCDLITVKDEQKSKDM 129 >gi|115391906|ref|YP_778494.1| ribosomal protein S4 [Jasminum nudiflorum] gi|122164969|sp|Q06RC7|RR4_JASNU RecName: Full=30S ribosomal protein S4, chloroplastic gi|110456227|gb|ABG74632.1| ribosomal protein S4 [Jasminum nudiflorum] Length = 203 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK+ +YG + E + + + A +++G T L+ L Sbjct: 29 GSDLRKQPRSRKKSQYRIRLEEKQKLCFHYG-LREYQLLNYVRIAAKAKGPTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+ SYRCK D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTL 147 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 S ++++P ++++ H V + + D + V ++ N LVVE+YSR Sbjct: 148 IQNSLGSS-PQKELPNHLTL-HPFQYKGLV---NQIIDSKW-VGLKINELLVVEYYSR 199 >gi|42556504|gb|AAS19847.1| small ribosomal protein 4 [Schistochila laminigera] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI AARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPAARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPN 198 +K K K QL + L + +P NH +T +R + + + + Sbjct: 127 AIKNKKKSQLMINKNLNLLQKLKIP-----NHLIFDSTQLRGLVDQRINRESINLKINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|37992705|gb|AAR06531.1| small ribosomal protein 4 [Thamniopsis sinuata] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN ++I SYRCK D I +K + K A + + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYILDIPSYRCKPQDFITIKNQPKSEAIISKNIEFSQKV 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIDLKINELLVVEYYSR 192 >gi|32892126|gb|AAP89002.1| ribosomal protein S4 [Passiflora morifolia] Length = 185 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCIRLEEKQKLRFHYG-VTERQLLKYARIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIAQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|22091645|emb|CAC86579.1| small ribosomal protein S4 [Schimperobryum splendidissimum] Length = 190 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKNQRK 132 >gi|63101095|gb|AAY33172.1| small ribosomal protein 4 [Cardotiella subappendiculata] Length = 197 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPLDFITIKDRRK 139 >gi|51860521|gb|AAU11397.1| ribosomal protein small subunit 4 [Ephedra californica] Length = 201 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 14 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 73 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 132 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 133 TLKGKDPERLKIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 189 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 190 EMLVIEYYSR 199 >gi|74273089|gb|ABA01244.1| ribosomal protein S4 [Passiflora podlechii] gi|74273121|gb|ABA01260.1| ribosomal protein S4 [Passiflora lobbii subsp. ayaucuchoensis] Length = 183 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGQTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|58293867|gb|AAW69881.1| small ribosomal protein 4 [Cardotiella quinquefaria] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHRIVDIPSYRCKPLDFITIKDRRK 131 >gi|222103484|gb|ACM44271.1| small ribosomal protein subunit 4 [Leucodon pendulus] Length = 197 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 154 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|29422407|gb|AAO84599.1| small ribosomal protein 4 [Philonotis falcata] Length = 195 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G K+P + ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 RIIRRLGAXXGLTNKTP---QLKSSSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A + +G T L+ LE RLD +++R TI ARQ VNHRH+LVN R V+ Sbjct: 59 LLNYVRIARKXKGSTGEVLLQLLEMRLDNVIFRLGMAXTIPGARQLVNHRHILVNDRXVD 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 119 IPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI---LDR 175 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ESIGLKINELLVVEYYSR 193 >gi|12330550|gb|AAG52812.1| ribosomal protein 4 [Mittenia plumula] Length = 186 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L K K++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKHKLRXHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 128 >gi|67035785|gb|AAY62823.1| small ribosomal protein subunit 4 [Leucodon sciuroides] Length = 199 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|7576511|gb|AAF63868.1| ribosomal protein system 4 [Leucodon andrewsianus] Length = 190 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|118626051|emb|CAL39334.1| small ribosomal protein 4 [Herbertus aduncus] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 127 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLYGS---INQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|59803322|gb|AAX07769.1| Rps4 [Targionia hypophylla] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 PGLINKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNIVDIPSYNCKPKDII 129 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P ++ + D M + + ++ Y I + LV Sbjct: 130 TIKDRQKSQSIITKNLNSFQKQKIPNHLIL--DLMQIKGLVNQTIDREWIYLKINEL-LV 186 Query: 201 VEFYSR 206 VE+YSR Sbjct: 187 VEYYSR 192 >gi|66866247|gb|AAY57792.1| small ribosomal protein 4 [Bescherellia elegantissima] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 87 GMAPTIPGARQLVNHRHILVNNCIVDIASYRCKPQDFITIKDRQKSQAII 136 >gi|32892114|gb|AAP88996.1| ribosomal protein S4 [Passiflora villosa] gi|74273221|gb|ABA01310.1| ribosomal protein S4 [Passiflora reflexiflora] Length = 183 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 17/173 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G L+ LE R D I+ Sbjct: 19 RSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPKGRVLLQLLEMRWDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPQDLITVKDEQKSKDMIQN-SLDS 136 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + +P++++++ + +V + D + V +Q N LVVE+YSR Sbjct: 137 FPQEKLPKHLTLHPFQYKGLVNQII-------DSKW-VGLQINELLVVEYYSR 181 >gi|78369619|gb|ABB43039.1| ribosomal protein 4 [Exostratum blumii] Length = 201 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I VK + K + + + ++ Sbjct: 99 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITVKNQQKSEVIINKNIEFYQKF 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 159 KIPNHLTYNSLEKKGLVNQI---LDSESIGLKINELLVVEYYSR 199 >gi|307602405|gb|ADN68084.1| ribosomal protein S4 [Xanthocyparis vietnamensis] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 10/175 (5%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE R Sbjct: 16 KKKHSKPLKSSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K + + Sbjct: 75 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQGLRNIMKK 134 Query: 156 ASQLAERD---VPEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ ++D VP +++ + + + V+ K + + LVVE+YSR Sbjct: 135 NIEIFQKDKMRVPPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 187 >gi|92417441|gb|ABE76816.1| ribosomal protein subunit 4 [Equisetum fluviatile] Length = 192 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 NL G V ++ + Q + K S + ++L AKQ+++ YG ++E++ + + A Sbjct: 2 NLPGLTNKLVESKKNQASGNDQSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIA 60 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 ++G T L+ LE RLD I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK Sbjct: 61 RCAKGSTGQILLQLLEMRLDNILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKP 120 Query: 138 GDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + K+ Q A+ +P++ +S++ FV + + + + Sbjct: 121 KDIITIGAPKTYQSIITKRIEAFAKDQIPDHLTLSLSEQKKPKGFVNYLINRESIGLKI- 179 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 180 -NELLVVEYYSR 190 >gi|74273145|gb|ABA01272.1| ribosomal protein S4 [Passiflora truncata] Length = 183 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 4/123 (3%) Query: 31 SYGPGLHGQ-RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 S PG+ R + S + ++L KQK++ +YG ++E++ + A +++G T L+ Sbjct: 8 SKSPGVRSAFSRSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLL 66 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKS 147 LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKS Sbjct: 67 QLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKS 126 Query: 148 KQL 150 K + Sbjct: 127 KDM 129 >gi|3098208|gb|AAC15552.1| small ribosomal protein 4 [Tayloria lingulata] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN R V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMSPTIPGARQLVNHRHIIVNDRIVDIPSYRCKPQDFITIKARQKSQVIINKNIEFYQKH 151 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPDHLIYNSLKKQGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|3098248|gb|AAC15572.1| small ribosomal protein 4 [Rhizogonium novae-hollandiae] Length = 192 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDQQK 134 >gi|63100981|gb|AAY33115.1| small ribosomal protein 4 [Ectropothecium leptochaeton] Length = 199 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I YRCK D+I +K + K + + + +R Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDISGYRCKPQDLITIKNQQKSETIINKNIEFYQRS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|62079663|gb|AAX61177.1| small ribosomal protein 4 [Makinoa crispata] Length = 196 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 90/160 (56%), Gaps = 6/160 (3%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G ++S G Q K S + ++L KQK++ +YG ++E++ Sbjct: 5 KIIRRLGA-LPGLTNKIPKSKS---GFTNQASNKKLSQYRIRLEEKQKLRFHYG-LTERQ 59 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 A R++G T L+ LE RLD I++R PTI +ARQ VNHRH+LVN V+ Sbjct: 60 LLKYVCIARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPSARQLVNHRHILVNNYPVD 119 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYI 168 I SY C+ +VI ++ K + +++ L++R VP ++ Sbjct: 120 IPSYNCEPENVISIRDPKKSRSIIIKNIDLSQRAKVPNHL 159 >gi|82394715|gb|ABB72436.1| ribosomal protein small subunit 4 [Loxogramme abyssinica] Length = 186 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 8/166 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 24 KISQFCIRLEAKQRLRLNYG-LTERQLLKYVRVARKARGSTGQVSLQLLEMRLDNVIFHL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN V+I SYRCK D+I V+ + +++ S+L D Sbjct: 83 GMASTVPAARQLVNHRHILVNNCVVDIPSYRCKPKDIITVRNRPTSSNALI--SKLTRGD 140 Query: 164 -VPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ ++ DN V ++ + + + LVVE+YSR Sbjct: 141 KTPDHLTSYLSEDNKPTGLVNCIANRESIKLDI--NELLVVEYYSR 184 >gi|42556434|gb|AAS19812.1| small ribosomal protein 4 [Jubulopsis novae-zelandiae] Length = 192 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 30 KISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFCL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+ +N +V+I SY C+ GD+I ++ + K + + + + + Sbjct: 89 GMAPTIPGARQLVNHRHISINNETVDIPSYNCEPGDIITIRNREKSQSIITKNLNSFHKS 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P ++++N + + I +++ + + LVVE+YSR Sbjct: 149 EIPNHLTLNSTQLRGS---INTTIHREWIDLKVNELLVVEYYSR 189 >gi|7576663|gb|AAF63944.1| ribosomal protein system 4 [Bescherellia cryphaeoides] Length = 188 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 87 GMAPTIPGARQLVNHRHILVNNCIVDIASYRCKPQDFITIKDRQKSQAII 136 >gi|170516237|gb|ACB15120.1| small ribosomal protein 4 [Austrocedrus chilensis] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +YG + E++ + A R+ G T L+ LE RLD I++R Sbjct: 34 KPSKYPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAEGSTGQVLLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K+K Sbjct: 93 GMAFTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKEKQ 136 >gi|78102667|gb|ABB21547.1| small ribosomal protein 4 [Plagiochila gregaria] Length = 165 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDISSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 +K K K +++ Sbjct: 131 TIKNKQKSQSAI 142 >gi|49182752|gb|AAT57838.1| small ribosomal protein [Nardia insecta] gi|49182764|gb|AAT57844.1| small ribosomal protein [Nardia scalaris] Length = 195 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGS---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37992651|gb|AAR06504.1| small ribosomal protein 4 [Pilotrichidium callicostatum] Length = 188 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKM 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNFLEKKGLINQI---LDXESIGLKINELLVVEYYSR 186 >gi|58293903|gb|AAW69898.1| small ribosomal protein 4 [Stoneobryum mirum] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH++VN R V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKS 146 Query: 164 -VPEYISVN 171 +P +++ N Sbjct: 147 KIPNHLTYN 155 >gi|7576543|gb|AAF63884.1| ribosomal protein system 4 [Trachyloma diversinerve] Length = 188 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 146 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLIYSSLEKKGLVNQILDRESIDLK-------INELLVVEYYSR 187 >gi|49182754|gb|AAT57839.1| small ribosomal protein [Marsupella aquatica] Length = 195 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIELRGS---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|75858234|gb|ABA28691.1| small ribosomal protein 4 [Nardia compressa] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGS---VNQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|170516235|gb|ACB15119.1| small ribosomal protein 4 [Actinostrobus pyramidalis] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + +L+ KQK++ +YG +SE++ + A R+ G T L+ LE RLD I++R Sbjct: 34 KPSKYPERLKEKQKLRFHYG-LSERQLLQYVRIARRAEGSTGQVLLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K Sbjct: 93 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQ 136 >gi|118626029|emb|CAL39330.1| small ribosomal protein 4 [Scapania lingulata] Length = 202 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLRQLQGS---VNQTVNREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|110225639|ref|YP_665646.1| ribosomal protein S4 [Nephroselmis olivacea] gi|6066154|gb|AAF03172.1|AF110138_4 ribosomal protein S4 [Nephroselmis olivacea] Length = 238 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%) Query: 19 LWGRPKSPVNTRSYGPGLH---GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 LW R + T S LH Q+ + K S + Q +Q + YG+I +K+ ++ Sbjct: 56 LWQRSSTLPKTAS----LHIKRVQKNEQKESDYFSQFTTRQTLSSIYGNIQKKQMNNLVN 111 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 +A R +G LI+ LESRLD I+YRA F +IF ARQ +NH ++VNG N + Sbjct: 112 QAFRRKGHAGSRLITLLESRLDVILYRASFCTSIFTARQLINHNKIMVNGIISNSSALLL 171 Query: 136 KEGDVIEVKQKSKQ-LASVLEASQLAERDVPEYISVNHDNMVATFVRIPS 184 GD++ V + L + +++ Q + P Y+ ++++ M F+ P+ Sbjct: 172 SPGDIVSVVHNYEMTLKNSIKSIQKKNLNKPNYLEISYNLMTIVFLYAPT 221 >gi|74273093|gb|ABA01246.1| ribosomal protein S4 [Passiflora penduliflora] Length = 183 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|294337088|emb|CAQ52694.1| ribosomal protein S4 [Straminergon stramineum] Length = 202 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S L+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SLNQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|222103518|gb|ACM44288.1| small ribosomal protein subunit 4 [Hylocomium splendens] Length = 197 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 95 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 145 >gi|29422401|gb|AAO84596.1| small ribosomal protein 4 [Bartramia ithyphylla] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 96 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFYQKY 155 Query: 163 DVPEYISVN 171 ++P +++ N Sbjct: 156 EIPNHLTYN 164 >gi|293612016|gb|ADE48452.1| ribosomal protein 4 [Stangeria eriopus] Length = 162 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 1 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK DVI V+ + + + + L+++D Sbjct: 60 GMAPTIPGARQLVNHRHILVNDCVVDIPSYRCKPLDVITVRNQQGLRSMIDKNLNLSQKD 119 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + V LVVE+YSR Sbjct: 120 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKV--NELLVVEYYSR 160 >gi|222103498|gb|ACM44278.1| small ribosomal protein subunit 4 [Hylocomium splendens] Length = 203 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 101 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 151 >gi|118625935|emb|CAL39289.1| small ribosomal protein 4 [Jamesoniella oenops] Length = 202 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNKGIVDIPSYNCEPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P ++ + + FV + + V + LV Sbjct: 138 TIRNKQKSQSIITKNTNLFQKVKIPSHLIFDSTQLRG-FVNQTVNREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|94962381|gb|ABF48497.1| small ribosomal protein subunit 4 [Paranapiacabaea paulista] Length = 193 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNDYMVDIPSYRCKPQDFITIKNQHKSEIIINKNIEFYQKS 150 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 191 >gi|41179020|ref|NP_958376.1| ribosomal protein S4 [Chlamydomonas reinhardtii] gi|1350892|sp|P48270|RR4_CHLRE RecName: Full=30S ribosomal protein S4, chloroplastic gi|862379|gb|AAA81363.1| 30S ribosomal protein S4 [Chlamydomonas reinhardtii] gi|28269743|tpg|DAA00921.1| TPA_inf: ribosomal protein S4 [Chlamydomonas reinhardtii] gi|213517403|gb|ACJ50109.1| ribosomal protein S4 [Chlamydomonas reinhardtii] Length = 257 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 15/141 (10%) Query: 34 PGLHGQRR--KSKP-----SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSH 86 PG HG + K++P S + ++L+ KQ+++ YG I+E++ + ++A + + T Sbjct: 44 PGQHGLTKLLKTRPYDSSESDYLIRLKVKQRLRFNYG-ITERQLVNYVRKAKKIKESTGQ 102 Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 L+ FLE RLD IV+R PTI AARQ ++H H+ VN + VNI SY CK DVI V K Sbjct: 103 VLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMCKPKDVISVAMK 162 Query: 147 SKQLASVLEASQLAERDVPEY 167 + L QL +++ EY Sbjct: 163 QRSL-------QLVNKNLQEY 176 >gi|328541112|gb|AEB21780.1| ribosomal protein S4 [Telaranea diacantha] Length = 199 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KVIRRLGA-LPGLTSKTLKPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE R D ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRSDNTIFRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + ++S L + +P +++++ + + I Sbjct: 117 NENIVDIPSYNCEPGDIITIRDKQKSQSLITKSSSLFQNLKIPNHLTLDSIKLCGS---I 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 NQTINRESINLKINELLVVEYYSR 197 >gi|42541371|gb|AAS19536.1| ribosomal protein small subunit 4 [Selliguea subsparsa] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 6/166 (3%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 26 GKICQFXVRLEAKQRLRLNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFH 84 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 F T+ AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ ++ Sbjct: 85 LGFASTVPAARQLVNHRHILVNSYVVDIPSYRCKPKDIITVRNRPTSYNALRNKFTGGDK 144 Query: 163 DVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN A V + + V + L VE+YSR Sbjct: 145 -TPDHLTISLSEDNKPAGLVNCVVNRESVDLNI--NEMLDVEYYSR 187 >gi|67035980|gb|AAY62916.1| small ribosomal protein subunit 4 [Hylocomium splendens] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 142 >gi|67035843|gb|AAY62848.1| small ribosomal protein subunit 4 [Donnellia commutata] Length = 194 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGXILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 192 >gi|52788819|gb|AAU87382.1| ribosomal protein small subunit 4 [Thelypteris palustris] Length = 199 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++R Sbjct: 37 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRCK D+I V+ + ++ S ++ Sbjct: 96 GMASTIPAARQLVNHRHILVNNRIVDIPSYRCKPKDIITVRNRPTSYNALRGESPGGDK- 154 Query: 164 VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N V ++ + V + LVVE+YSR Sbjct: 155 TPDHLTVSLLEGNRPTGLVNRVANRESVNLNI--NELLVVEYYSR 197 >gi|74273131|gb|ABA01265.1| ribosomal protein S4 [Passiflora punctata] Length = 183 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 7/168 (4%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDMIKK-SLDS 136 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P ++ ++ + +I S + + LV+E+YSR Sbjct: 137 FPRTNLPTHLILSPEKYKGLVTQIIDS---KCLGLKINEFLVIEYYSR 181 >gi|42556396|gb|AAS19793.1| small ribosomal protein 4 [Bazzania sp. He-Nygren 569] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 KPKSSHNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH+HV +N V+I SY CK GD+I Sbjct: 67 GSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 127 TMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|26399184|sp|Q9M4B8|RR4_JAMAU RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017423|emb|CAB92136.1| small ribosomal protein 4 [Syzygiella autumnalis] Length = 202 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK S+ + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTFKSKSSFIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRFDMAPTIPGARQLVNHRHISVNNGIVDIPSYNCEPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIRNKQKSQSIITKNTNLFQKIKIPSHLTFDSTQLRG-FVNQTVNREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|289599923|gb|ADD12912.1| ribosomal protein S4 [Hibbertia hamulosa] Length = 163 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 2 KRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 60 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + L++S Sbjct: 61 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNSLDSS--P 118 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 119 HEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 161 >gi|42794697|gb|AAS45744.1| Rps4 [Semiramisia speciosa] Length = 211 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 11/163 (6%) Query: 51 QLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIF 110 +L+ KQK++ +YG ++E++ + +++G L+ LE RLD I++R TI Sbjct: 49 RLQEKQKLRFHYG-LTERQLLKYVRIXGKAKGSPGQVLLQLLEMRLDNILFRLGMASTIP 107 Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERD 163 ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + + + Sbjct: 108 GARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKRKHKR 167 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 168 VPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|7576605|gb|AAF63915.1| ribosomal protein system 4 [Trachypus bicolor] Length = 189 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 147 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R SLK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVTQILDRESVSLK-------INELLVVEYYSR 188 >gi|75858222|gb|ABA28685.1| small ribosomal protein 4 [Adelanthus bisetulus] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTFKSKSSYVDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ G++I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDIVDIPSYNCEPGNII 126 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K QL + +P +++ + ++ FV + + V + LV Sbjct: 127 TIKNKRKSQLIITKNINLFQNLKIPSHLTFDSIQLLG-FVNQIVNREWVNLKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|75858230|gb|ABA28689.1| small ribosomal protein 4 [Delavayella serrata] Length = 191 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKVLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P ++ + N+ + + ++ + + LV Sbjct: 127 TVKNKQKSQSIITKNINLFQKSKIPSHLIFDSTNLSGS---VNQTINRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|125662710|gb|ABN50305.1| small ribosomal protein 4 [Ephedra intermedia] Length = 199 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 12 PGLTSKRPKYKKRGHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 130 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 131 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 187 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 188 EMLVIEYYSR 197 >gi|3098222|gb|AAC15559.1| small ribosomal protein 4 [Orthotrichum lyellii] gi|58293881|gb|AAW69887.1| small ribosomal protein 4 [Ulota hutchinsiae] Length = 189 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH++VN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHIIVNHRIVDIPSYRCKPQDFITIKNRQK 131 >gi|26399101|sp|P59140|RR4_HYLSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504353|emb|CAC80756.1| small ribosomal protein 4 [Hylocomium splendens] Length = 202 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 100 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 150 >gi|270300655|gb|ACZ69406.1| ribosomal protein S4 [Radula wichurae] gi|270300657|gb|ACZ69407.1| ribosomal protein S4 [Radula wichurae] gi|270300659|gb|ACZ69408.1| ribosomal protein S4 [Radula wichurae] gi|270300661|gb|ACZ69409.1| ribosomal protein S4 [Radula wichurae] gi|270300663|gb|ACZ69410.1| ribosomal protein S4 [Radula carringtonii] gi|270300665|gb|ACZ69411.1| ribosomal protein S4 [Radula carringtonii] gi|270300667|gb|ACZ69412.1| ribosomal protein S4 [Radula carringtonii] gi|270300669|gb|ACZ69413.1| ribosomal protein S4 [Radula carringtonii] Length = 202 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSFSIDRSIS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH+H ++N +VNI SY C+ GD+I V+ + K + + L ++ ++P +++ + Sbjct: 112 VNHKHFVINNFTVNIPSYNCELGDIITVRNRQKSKSIITRNMNLFQKLEIPSHLTFDSTQ 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + I + + LVVE+YSR Sbjct: 172 LRGS---INQRIDCNSINFKINELLVVEYYSR 200 >gi|74273101|gb|ABA01250.1| ribosomal protein S4 [Passiflora candida] Length = 183 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++ + KQK++ +YG I+E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRFQEKQKLRLHYG-ITERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P++++++ I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFRQEQLPKHLTLHRIQYKGLVNEIIDS-KWVGLEI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|125662720|gb|ABN50310.1| small ribosomal protein 4 [Ephedra intermedia] Length = 195 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 8 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 67 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 126 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 127 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 183 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 184 EMLVIEYYSR 193 >gi|157689558|gb|ABV65335.1| ribosomal protein S4 [Stachyurus praecox] Length = 185 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 19/179 (10%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R Sbjct: 16 LRNQSRPVKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGLVLLQLLEMR 74 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-AS 152 LD I++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + QKS+ L + Sbjct: 75 LDNILFRLGMASTIPQARQLVNHRHILVNGCIVDIPSYRCKPQDIITARNEQKSRTLIQN 134 Query: 153 VLEASQLAERDVPEYISV---NHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 L++S ++P+++++ + +V + D + V ++ N LVVE+YSR Sbjct: 135 YLDSS--PHEELPKHLTLPPFQYKGLVNQII-------DSKW-VGLKINELLVVEYYSR 183 >gi|53830756|gb|AAU95227.1| small ribosomal protein 4 [Syrrhopodon revolutus] gi|53830758|gb|AAU95228.1| small ribosomal protein 4 [Syrrhopodon revolutus] gi|53830760|gb|AAU95229.1| small ribosomal protein 4 [Syrrhopodon revolutus] gi|53830762|gb|AAU95230.1| small ribosomal protein 4 [Syrrhopodon revolutus] gi|53830764|gb|AAU95231.1| small ribosomal protein 4 [Syrrhopodon revolutus] gi|53830766|gb|AAU95232.1| small ribosomal protein 4 [Syrrhopodon revolutus] gi|53830768|gb|AAU95233.1| small ribosomal protein 4 [Syrrhopodon revolutus] Length = 177 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARNVKGSTGQILLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAER 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K QK Q V + ++ Sbjct: 75 GLAPTIPGARQLVNHRHILVNNHMVNIPSYQCKPQDFITIKDQKKYQTMIVKNTNFFSKH 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ N +I L + + LVVE+YSR Sbjct: 135 KTPNHLIFNSVEKKGFVNQI---LDQESIGLKINELLVVEYYSR 175 >gi|18920763|gb|AAL82426.1| ribosomal protein system 4 [Orthothecium rufescens] Length = 195 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKS 152 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|51860581|gb|AAU11427.1| ribosomal protein small subunit 4 [Ephedra major subsp. procera] Length = 201 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 14 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 73 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 132 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 133 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 189 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 190 EMLVIEYYSR 199 >gi|222103542|gb|ACM44300.1| small ribosomal protein subunit 4 [Hylocomium splendens] Length = 195 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 93 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 143 >gi|309322234|ref|YP_003934312.1| ribosomal protein S4 [Monsonia speciosa] gi|197131488|gb|ACH47262.1| ribosomal protein S4 [Monsonia speciosa] gi|300069327|gb|ADJ66447.1| ribosomal protein S4 [Monsonia speciosa] Length = 208 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 13/185 (7%) Query: 25 SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 S N+RS P R K S + ++L KQ+++ +YG ++E++ + A +++G T Sbjct: 32 SKSNSRSIKP----PRSSRKKSQYRIRLEEKQRLRFHYG-LTERQLLKYVRIAGKAKGPT 86 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++R TI ARQ VNHRH+LVNG V+I SYRCK D+I + Sbjct: 87 GQVLLQLLEMRLDNTLFRLGMASTIPRARQLVNHRHILVNGHVVDIPSYRCKPRDIITAR 146 Query: 145 QKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVV 201 +K K A + A R +P++++ H V + + D + V ++ N LVV Sbjct: 147 EKEKSRALIQNYLDAAPRKALPKHLT-THRRQYKGLV---NQIIDREW-VGLKINEFLVV 201 Query: 202 EFYSR 206 E+YSR Sbjct: 202 EYYSR 206 >gi|42556506|gb|AAS19848.1| small ribosomal protein 4 [Temnoma pilosum] gi|118626067|emb|CAL41753.1| small ribosomal protein 4 [Pseudolepicolea quadrilaciniata] Length = 191 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY CK GDVI Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNYIVDIPSYNCKPGDVI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ +P +++++ + + I ++ + + LV Sbjct: 127 TVRNKQKSQSIITKNINLFQKLKIPNHLTLDSTQLRGS---INQTINREWINLQINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|12642236|gb|AAK00200.1| rps4 [Aphanorrhegma serratum] Length = 194 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD Sbjct: 28 QSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV+R PTI ARQ VNH HVLVN ++I SYRCK D I VK + K A + + Sbjct: 87 IVFRLGMAPTIPGARQLVNHXHVLVNDCILDIPSYRCKPEDXITVKNRQKSQAIITKNID 146 Query: 159 LAERD-VPEYIS 169 +++ VP +++ Sbjct: 147 FSQKSKVPNHLT 158 >gi|47606950|gb|AAT36395.1| ribosomal protein subunit 4 [Trachyloma planifolium] gi|63101077|gb|AAY33163.1| small ribosomal protein 4 [Trachyloma planifolium] Length = 195 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 152 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLIYSSLEKKGLVNQILDRESIDLK-------INELLVVEYYSR 193 >gi|42794704|gb|AAS45747.1| Rps4 [Symphysia racemosa] Length = 142 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++ Sbjct: 40 KKKKSQYHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++ Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARK 142 >gi|63191679|gb|AAY34801.1| small ribosomal protein subunit 4 [Isodrepanium lentulum] Length = 202 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + KI RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSPYRGPRVKIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K++ K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKKQQK 144 >gi|92417465|gb|ABE76828.1| ribosomal protein subunit 4 [Jaegerina scariosa] Length = 197 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVNIPSYQCKSQDFITIKNQRKSETIINKNIEFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLEKKGLVNQI---LNRESIDLKINELLVVEYYSR 195 >gi|32401876|gb|AAP80926.1| small ribosomal protein 4 [Cunninghamia lanceolata] Length = 181 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 23/171 (13%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 20 YPVRLKEKQKLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 78 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL----EASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D+I +K K + L +++ E Q +R Sbjct: 79 TIPEARQLVNHRHILVNDRLVDIPSYRCKPQDLISIKDKQR-LRNLINKNREIFQKEKRR 137 Query: 164 VPEYISV-----NHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++++ + +V + RI + ++ LVVE+YSR Sbjct: 138 VPPHLNLIKKKSQYIGLVKKIIDSNRISLKINEL---------LVVEYYSR 179 >gi|313183929|ref|YP_004021783.1| ribosomal protein S4 [Equisetum arvense] gi|52783273|sp|Q6H9L6|RR4_EQUAR RecName: Full=30S ribosomal protein S4, chloroplastic gi|62287268|sp|Q6H9L3|RR4_EQUFL RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927191|emb|CAE47531.1| small ribosomal protein 4 [Equisetum arvense] gi|48927197|emb|CAE47534.1| small ribosomal protein 4 [Equisetum fluviatile] gi|281371649|gb|ADA63582.1| ribosomal protein S4 [Equisetum arvense] Length = 207 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 6/192 (3%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 NL G V ++ + Q + K S + ++L AKQ+++ YG ++E++ + + A Sbjct: 17 NLPGLTNKLVESKKNQASGNDQSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIA 75 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 ++G T L+ LE RLD I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK Sbjct: 76 RCAKGSTGQILLQLLEMRLDNILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKP 135 Query: 138 GDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + K+ Q A+ +P++ +S++ FV + + + + Sbjct: 136 KDIITIGAPKTYQSIITKRIEAFAKDQIPDHLTLSLSEQKKPKGFVNYLINRESIGLKI- 194 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 195 -NELLVVEYYSR 205 >gi|62287269|sp|Q6H9L5|RR4_EQUBO RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927193|emb|CAE47532.1| small ribosomal protein 4 [Equisetum bogotense] Length = 207 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ NL G V ++ Q + K S + ++L AKQ+++ Sbjct: 1 MSRYRGPRLKIIRRL-RNLPGLTNKLVESKKNQASGSDQSIQKKVSQYCIRLEAKQRLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + + A ++G T L+ LE RLD I++R VPTI +ARQ +NHRH Sbjct: 60 NYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDNILFRLGVVPTIPSARQLINHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEV 143 +LVN R V++ S+ CK D+I + Sbjct: 119 ILVNDRIVDVPSFHCKPKDIITI 141 >gi|74273127|gb|ABA01263.1| ribosomal protein S4 [Passiflora ornithoura] Length = 183 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|289599870|gb|ADD12886.1| ribosomal protein S4 [Dillenia alata] gi|289599881|gb|ADD12891.1| ribosomal protein S4 [Dillenia suffruticosa] Length = 163 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN R V+I SYRCK D++ VK + K A + L++S Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSS-- 117 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 118 PHEELPKHLTLHPFQYKGLVNQIIDS-KCVGLKI--NELLVVEYYSR 161 >gi|49182732|gb|AAT57828.1| small ribosomal protein [Jubulopsis novae-zelandiae] Length = 186 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 25 KISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFCL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+ +N +V+I SY C+ GD+I ++ + K + + + + + Sbjct: 84 GMAPTIPGARQLVNHRHISINNETVDIPSYNCEPGDIITIRNREKSQSIITKNLNSFHKS 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P ++++N + + I +++ + + LVVE+YSR Sbjct: 144 EIPNHLTLNSTQLRGS---INTTIHREWIDLKVNELLVVEYYSR 184 >gi|12330556|gb|AAG52815.1| ribosomal protein 4 [Pterobryella praenitens] Length = 189 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKLHDFITIKDRQK 131 >gi|7576637|gb|AAF63931.1| ribosomal protein system 4 [Leucomium strumosum] Length = 190 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKL 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNFLEKKGLINQI---LHRESIGLKINELLVVEYYSR 189 >gi|51860515|gb|AAU11394.1| ribosomal protein small subunit 4 [Ephedra aspera] gi|51860547|gb|AAU11410.1| ribosomal protein small subunit 4 [Ephedra multiflora] gi|51860551|gb|AAU11412.1| ribosomal protein small subunit 4 [Ephedra boelkei] gi|51860557|gb|AAU11415.1| ribosomal protein small subunit 4 [Ephedra fragilis] Length = 202 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 15 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 74 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 133 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 134 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 190 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 191 EMLVIEYYSR 200 >gi|195984192|gb|ACG63786.1| rps4 [Costesia spongiosa] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +++ Sbjct: 97 GMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAMITKNIDFSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 157 KVPNHLTFNSLQKKGLVNQI---LDRESIGLEINELLVVEYYSR 197 >gi|29422395|gb|AAO84593.1| small ribosomal protein 4 [Philonotis scabrifolia] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRCHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAXTIPGARQLVNHRHILVNBRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 156 Query: 163 DVPEYISVN 171 +P++++ N Sbjct: 157 KIPBHLTYN 165 >gi|51860501|gb|AAU11387.1| ribosomal protein small subunit 4 [Ephedra strobilacea] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 15 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 74 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 133 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 134 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 190 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 191 EMLVIEYYSR 200 >gi|51860565|gb|AAU11419.1| ribosomal protein small subunit 4 [Ephedra distachya subsp. helvetica] Length = 197 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 10 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 68 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 69 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 128 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 129 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 185 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 186 EMLVIEYYSR 195 >gi|51860479|gb|AAU11376.1| ribosomal protein small subunit 4 [Ephedra laristanica] gi|51860483|gb|AAU11378.1| ribosomal protein small subunit 4 [Ephedra aphylla] gi|51860485|gb|AAU11379.1| ribosomal protein small subunit 4 [Ephedra fragilis] gi|51860489|gb|AAU11381.1| ribosomal protein small subunit 4 [Ephedra fedtschenkoae] gi|51860495|gb|AAU11384.1| ribosomal protein small subunit 4 [Ephedra saxatilis] gi|51860499|gb|AAU11386.1| ribosomal protein small subunit 4 [Ephedra sinica var. pumila] gi|51860505|gb|AAU11389.1| ribosomal protein small subunit 4 [Ephedra transitoria] gi|51860511|gb|AAU11392.1| ribosomal protein small subunit 4 [Ephedra torreyana var. powelliorum] gi|51860533|gb|AAU11403.1| ribosomal protein small subunit 4 [Ephedra americana] gi|51860535|gb|AAU11404.1| ribosomal protein small subunit 4 [Ephedra gracilis] gi|51860553|gb|AAU11413.1| ribosomal protein small subunit 4 [Ephedra compacta] gi|51860555|gb|AAU11414.1| ribosomal protein small subunit 4 [Ephedra fragilis] gi|51860561|gb|AAU11417.1| ribosomal protein small subunit 4 [Ephedra foeminea] gi|51860571|gb|AAU11422.1| ribosomal protein small subunit 4 [Ephedra przewalskii] gi|51860573|gb|AAU11423.1| ribosomal protein small subunit 4 [Ephedra przewalskii] gi|51860577|gb|AAU11425.1| ribosomal protein small subunit 4 [Ephedra sinica] gi|51860583|gb|AAU11428.1| ribosomal protein small subunit 4 [Ephedra major subsp. procera] gi|51860585|gb|AAU11429.1| ribosomal protein small subunit 4 [Ephedra saxatilis var. sikkimensis] gi|51860587|gb|AAU11430.1| ribosomal protein small subunit 4 [Ephedra saxatilis] gi|51860589|gb|AAU11431.1| ribosomal protein small subunit 4 [Ephedra sp.] Length = 201 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 14 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 73 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 132 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 133 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 189 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 190 EMLVIEYYSR 199 >gi|51860509|gb|AAU11391.1| ribosomal protein small subunit 4 [Ephedra antisyphilitica] Length = 205 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 18 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 136 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 137 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 193 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 194 EMLVIEYYSR 203 >gi|32401846|gb|AAP80911.1| small ribosomal protein 4 [Afrocarpus falcatus] Length = 216 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R++G T L+ Sbjct: 6 PGLTKYRRVDREKEKKSRYRIRLEEKQKVRFHYG-LTDRQLLQYVRIARRAKGSTGQVLL 64 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ NHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 65 QLLEMRLDNILFRLGMALTIPGARQLXNHRHILVNGRMVDIPSYRCNPKDVITIKDRQR 123 >gi|51860487|gb|AAU11380.1| ribosomal protein small subunit 4 [Ephedra distachya] gi|51860525|gb|AAU11399.1| ribosomal protein small subunit 4 [Ephedra pedunculata] gi|51860529|gb|AAU11401.1| ribosomal protein small subunit 4 [Ephedra frustillata] gi|51860543|gb|AAU11408.1| ribosomal protein small subunit 4 [Ephedra tweediana] gi|51860545|gb|AAU11409.1| ribosomal protein small subunit 4 [Ephedra chilensis] gi|51860549|gb|AAU11411.1| ribosomal protein small subunit 4 [Ephedra breana] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 15 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 74 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 133 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 134 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 190 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 191 EMLVIEYYSR 200 >gi|328541102|gb|AEB21775.1| ribosomal protein S4 [Mastigobryum lenormandii] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 97 GMAPTIPGARQLVNHKHVAMNNNIVDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNL 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 157 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 197 >gi|74273125|gb|ABA01262.1| ribosomal protein S4 [Passiflora organensis] Length = 183 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|46486580|gb|AAS98726.1| ribosomal protein subunit 4 [Pterobryella praenitens] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 98 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKLHDFITIKDRQK 142 >gi|51860539|gb|AAU11406.1| ribosomal protein small subunit 4 [Ephedra rupestris] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 12 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 130 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 131 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 187 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 188 EMLVIEYYSR 197 >gi|123967997|ref|YP_001008855.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. AS9601] gi|126695767|ref|YP_001090653.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9301] gi|157412822|ref|YP_001483688.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9215] gi|152112244|sp|A3PBC7|RS4_PROM0 RecName: Full=30S ribosomal protein S4 gi|152112248|sp|A2BPN7|RS4_PROMS RecName: Full=30S ribosomal protein S4 gi|172047276|sp|A8G3C1|RS4_PROM2 RecName: Full=30S ribosomal protein S4 gi|91070325|gb|ABE11242.1| 30S ribosomal protein S4 [uncultured Prochlorococcus marinus clone HF10-88F10] gi|123198107|gb|ABM69748.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. AS9601] gi|126542810|gb|ABO17052.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9301] gi|157387397|gb|ABV50102.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9215] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + + +S PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVTRRLGE-LPGLTRK-ASKKSNPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K+A G T NL+ LE+RLD + +R F TI +RQ VNH H Sbjct: 58 NYG-VSEKQLVRYVKKARAQEGSTGTNLLRLLENRLDNVCFRLGFGGTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V VNG+ ++I Y+CK GDVI +K+ SK+L +E LA +VP ++ ++ + Sbjct: 117 VTVNGKVLDIAGYQCKSGDVIGIKENKASKKLVEGNIEFPGLA--NVPPHLDLDKPKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 175 ---KINGKCDREWVALEINELLVVEYYSR 200 >gi|32401759|gb|AAP80868.1| small ribosomal protein 4 [Stangeria eriopus] Length = 169 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D ++R Sbjct: 8 KISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIAGRAKGSTGQVLLQLLEMRSDNTIFRL 66 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK DVI V+ + + + + L+++D Sbjct: 67 GMAPTIPGARQLVNHRHILVNDCVVDIPSYRCKPLDVITVRNQQGLRSMIDKNLNLSQKD 126 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ +I S K + V LVVE+YSR Sbjct: 127 QMPNHLTLHSSRYKGLVNQIIDS-KWISLKV--NELLVVEYYSR 167 >gi|16565399|gb|AAL26214.1|AF313614_1 small ribosomal protein 4 [Chloranthus multistachys] Length = 190 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 97/176 (55%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 18 GSDLRNQSRFGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD ++R TI ARQ VNHRH+LVN R V+I SYRCK D+I + Q+S+ L Sbjct: 77 EMRLDNTLFRLGMASTIPGARQLVNHRHILVNSRIVDIPSYRCKPRDIITTRDEQRSRTL 136 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S E ++P++++++ +I S K + + LVVE+YSR Sbjct: 137 IQNHIDSSPHE-ELPKHLTLHSFQYKGLVNQIIDS-KSIGLKI--NELLVVEYYSR 188 >gi|66866249|gb|AAY57793.1| small ribosomal protein 4 [Racopilum ferriei] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 4/142 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 KIIRRLGALPGLTDKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNH+HVLVN R V+ Sbjct: 59 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRFGVAPTIPGARQLVNHKHVLVNDRIVD 118 Query: 130 IGSYRCKEGDVIEVKQKSKQLA 151 I SYRCK D I +K + K A Sbjct: 119 IPSYRCKPQDFITIKDRQKSQA 140 >gi|51860569|gb|AAU11421.1| ribosomal protein small subunit 4 [Ephedra gerardiana] Length = 205 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 18 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 136 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 137 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 193 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 194 EMLVIEYYSR 203 >gi|51860491|gb|AAU11382.1| ribosomal protein small subunit 4 [Ephedra monosperma] Length = 203 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 16 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 75 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 134 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 135 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 191 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 192 EMLVIEYYSR 201 >gi|328488170|gb|AEB19898.1| small ribosomal protein 4 [Paraschistochila pinnatifolia] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + V + V + + LV Sbjct: 127 AIKNKQKSESMITRNLNLLQKFKIPNHLTFDSTQLQG-LVNQKIHRESVNFKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|157689464|gb|ABV65288.1| ribosomal protein S4 [Drypetes roxburghii] Length = 186 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 1/111 (0%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 S+ S + ++L+ KQ+++ +YG ++E++ + + A +++G+ L+ LE RLD I++R Sbjct: 8 SRTSEYSIRLKEKQRLRFHYG-LTERQLLTYVRIAAKAKGEKGPVLLQLLEMRLDNILFR 66 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 TI ARQ VNHRH+LVNGR V+I SYRCK D+I K + K A + Sbjct: 67 LGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITAKDEQKSRAMI 117 >gi|92417461|gb|ABE76826.1| ribosomal protein subunit 4 [Cryphaea heteromalla] Length = 198 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 155 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNQILDRELIGLK-------INELLVVEYYSR 196 >gi|118626021|emb|CAL41740.1| small ribosomal protein 4 [Syzygiella autumnalis] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK S+ + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTFKSKSSFIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRFGMAPTIPGARQLVNHRHISVNNGIVDIPSYNCEPGDTI 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 138 TIRNKQKSQSIITKNTNLFQKIKIPSHLTFDSTQLRG-FVNQTVNREWVNLKI--NELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|42556444|gb|AAS19817.1| small ribosomal protein 4 [Lepicolea scolopendra] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L + +P +++ + + + ++ + +LK + Sbjct: 127 TIRNKEKSQSIITKNINLFQNLKIPSHLTFDSTKLRGSITQMINREWITLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|67035813|gb|AAY62837.1| small ribosomal protein subunit 4 [Catagoniopsis berteroana] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|328541138|gb|AEB21793.1| ribosomal protein S4 [Telaranea tetrapila] Length = 198 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 22 KPKSNYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+L+N V+I SY C+ GDVI Sbjct: 73 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHILINNNIVDIPSYDCESGDVI 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K + + + + L + +P +++ + + + I ++ + + LV Sbjct: 133 TIKDKQRSRSIITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|289599885|gb|ADD12893.1| ribosomal protein S4 [Doliocarpus elegans] Length = 163 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 5/165 (3%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAE 161 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K A + Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSFPH 119 Query: 162 RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 EELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 161 >gi|125662728|gb|ABN50314.1| small ribosomal protein 4 [Ephedra major] Length = 203 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 16 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 75 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 134 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 135 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 191 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 192 EMLVIEYYSR 201 >gi|58293901|gb|AAW69897.1| small ribosomal protein 4 [Groutiella chimborazensis] Length = 189 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNYRIVDIPSYRCKPLDFITIKDRRK 131 >gi|7576563|gb|AAF63894.1| ribosomal protein system 4 [Anacamptodon splachnoides] Length = 188 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRK 131 >gi|37992583|gb|AAR06470.1| small ribosomal protein 4 [Leucomium strumosum] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKL 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LHRESIGLKINELLVVEYYSR 192 >gi|63101009|gb|AAY33129.1| small ribosomal protein 4 [Limbella tricostata] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI AARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPAARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|51860559|gb|AAU11416.1| ribosomal protein small subunit 4 [Ephedra fragilis] Length = 204 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 17 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 76 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 135 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 136 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 192 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 193 EMLVIEYYSR 202 >gi|190361241|gb|ACE76925.1| ribosomal protein small subunit 4 [Trichomanes crispum] Length = 167 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S FG++L AKQ+++ YG E++ + A +++G T L+ LE RLD IV+R Sbjct: 15 KVSQFGIRLEAKQRLRFNYGS-RERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHR VLVN V+I SYRCK+ D+I ++ + Sbjct: 74 GMAPTIPAARQLVNHRRVLVNNHIVDIPSYRCKDKDLITLRSQ 116 >gi|125662708|gb|ABN50304.1| small ribosomal protein 4 [Ephedra equisetina] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 12 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 71 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 130 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 131 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 187 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 188 EMLVIEYYSR 197 >gi|121761827|gb|ABM64999.1| ribosomal protein S4 [Plagiomnium integrum] gi|121761843|gb|ABM65007.1| ribosomal protein S4 [Plagiomnium integrum] gi|121761849|gb|ABM65010.1| ribosomal protein S4 [Plagiomnium integrum] gi|121761851|gb|ABM65011.1| ribosomal protein S4 [Plagiomnium integrum] Length = 195 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|90970056|gb|ABE02797.1| ribosomal protein S4 [Passiflora micropetala] Length = 183 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|125662716|gb|ABN50308.1| small ribosomal protein 4 [Ephedra sp. Tibet-5] Length = 206 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 19 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 78 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 137 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 138 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 194 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 195 EMLVIEYYSR 204 >gi|99640360|emb|CAJ45116.1| putative ribosomal protein S4 gene [Azolla pinnata] gi|157272409|gb|ABV27019.1| ribosomal protein small subunit 4-like protein [Azolla pinnata] gi|157272423|gb|ABV27026.1| ribosomal protein small subunit 4-like protein [Azolla pinnata] Length = 203 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 8/168 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T + LE RLD I+Y Sbjct: 37 KISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIYHL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQ 158 PTI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + L V E+S+ Sbjct: 96 GMSPTIPAARQPVNHRHILVNDRIVDVPSYRCKPKDIITVRNRPTSLNGVKRTGNFESSR 155 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E +S+ DN V ++ + + + VVE+YSR Sbjct: 156 GNELPNHLTLSLLEDNRPKGLVNQTATRESIDLNI--NELSVVEYYSR 201 >gi|51860481|gb|AAU11377.1| ribosomal protein small subunit 4 [Ephedra aphylla] Length = 203 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 16 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 75 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 134 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 135 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 191 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 192 EMLVIEYYSR 201 >gi|51860531|gb|AAU11402.1| ribosomal protein small subunit 4 [Ephedra ochreata] gi|125662726|gb|ABN50313.1| small ribosomal protein 4 [Ephedra nevadensis] Length = 198 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 11 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 70 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 129 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 130 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 186 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 187 EMLVIEYYSR 196 >gi|222139880|ref|YP_002519947.1| ribosomal protein S4 [Ephedra equisetina] gi|220983548|dbj|BAH11315.1| ribosomal protein S4 [Ephedra equisetina] Length = 209 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 22 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 80 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 81 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 140 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 141 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 197 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 198 EMLVIEYYSR 207 >gi|32892124|gb|AAP89001.1| ribosomal protein S4 [Passiflora macrophylla] Length = 183 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P++++++ I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFPQEQLPKHLTLHRFQYKGLVNEIIDS-KWVGLEI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|74273091|gb|ABA01245.1| ribosomal protein S4 [Passiflora multiflora] Length = 183 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|121761841|gb|ABM65006.1| ribosomal protein S4 [Plagiomnium integrum] Length = 195 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDSIXLKINELLVVEYYSR 193 >gi|118625999|emb|CAL41737.1| small ribosomal protein 4 [Lepidozia cupressina] Length = 203 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + K+ RR+G + +PKS N RS K S + ++L K Sbjct: 1 MSRYRGPRVKVIRRLGAPPGLTSKTLKPKSNYNDRSTS--------NKKVSQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++E++ + A R++G T L+ LE RLD ++R TI ARQ Sbjct: 53 QKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNHRH+ +N V+I SY C+ GD+I ++ K K + + + L + +P +++ + Sbjct: 112 VNHRHISINNNIVDIPSYNCEPGDIITIRDKQKSRSIIAKNVNLFQNLKIPSHLTFDSIK 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + I ++ + + LVVE+YSR Sbjct: 172 LCGS---INQTIHREWINLKINELLVVEYYSR 200 >gi|117306730|emb|CAH73333.1| ribosomal protein S4 [Tetraphidopsis pusilla] Length = 179 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R P Sbjct: 26 YRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAP 84 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 TI ARQ VNHRH+LVN VNI SYRCK D I V+ K K A+ Sbjct: 85 TIPGARQLVNHRHILVNDHIVNIPSYRCKPQDFIIVENKQKSEAA 129 >gi|49182714|gb|AAT57819.1| small ribosomal protein [Haplomitrium gibbsiae] Length = 189 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKP------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K +P S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 PGLTNKAPKPRPGGTDQSIANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ R PTI ARQ VNHRH+L+N ++V+I S C+ GD+I Sbjct: 65 GSTGQVLLQLLEMRLDNVISRLGMAPTIPGARQLVNHRHILLNDKTVDIPSCNCEPGDII 124 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 V+ ++ + E + ++R P +++++ + +I SLK + Sbjct: 125 TVRDRAGSRPVIAEGTDPSQRSRTPNHLNLDSARNMGFVNQIIDREWISLK-------IN 177 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 178 ELLVVEYYSR 187 >gi|63191683|gb|AAY34803.1| small ribosomal protein subunit 4 [Orthothecium chryseum] Length = 195 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKS 152 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|51860503|gb|AAU11388.1| ribosomal protein small subunit 4 [Ephedra regeliana] gi|51860519|gb|AAU11396.1| ribosomal protein small subunit 4 [Ephedra fasciculata] gi|51860575|gb|AAU11424.1| ribosomal protein small subunit 4 [Ephedra monosperma] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 15 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 74 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 133 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 134 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 190 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 191 EMLVIEYYSR 200 >gi|51860517|gb|AAU11395.1| ribosomal protein small subunit 4 [Ephedra cutleri] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 4 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 63 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 122 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 123 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 179 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 180 EMLVIEYYSR 189 >gi|290790850|gb|ADD63106.1| ribosomal protein S4 [Microlaena stipoides] Length = 201 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 113/213 (53%), Gaps = 21/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNIIFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVNHDNM 175 +LVNGR VNI S+RCK D+I K Q+SK+L + +A D +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTID---- 167 Query: 176 VATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 168 TLQYKGLVNKILDRKW-VGLKINELLVVEYYSR 199 >gi|121761859|gb|ABM65015.1| ribosomal protein S4 [Plagiomnium rhynchophorum] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R ++I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRLIDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 157 KIPDHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 197 >gi|67035789|gb|AAY62825.1| small ribosomal protein subunit 4 [Pseudocryphaea domingensis] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|51860493|gb|AAU11383.1| ribosomal protein small subunit 4 [Ephedra somalensis] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 13 PGLTSKRPKYKKRVQRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 71 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 72 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 131 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 132 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 188 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 189 EMLVIEYYSR 198 >gi|125662712|gb|ABN50306.1| small ribosomal protein 4 [Ephedra rhytidosperma] Length = 206 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 19 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 78 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 137 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 138 TLKGKDPERLRIRMKKSWGQLWKSRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 194 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 195 EMLVIEYYSR 204 >gi|77862549|gb|ABB04547.1| small ribosomal protein 4 [Plagiochasma rupestre] Length = 201 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N ++I SY CK D I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLSMAPTIPGARQLVNHRHILINNNPIDIPSYNCKPKDTI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLMQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|26399102|sp|P59141|RR4_HYPAR RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504365|emb|CAC81026.1| small ribosomal protein 4 [Hypopterygium arbuscula] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 6/154 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTSKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 +LVN V+I SYRCK D I +K QKS+ + S Sbjct: 117 ILVNDYVVDIPSYRCKPQDFITIKNQQKSETIIS 150 >gi|289576406|dbj|BAI77777.1| ribosomal protein small subunit 4 [Hymenophyllum dentatum] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 30 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 89 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 148 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + +N+ V ++ + + + LVVE+YSR Sbjct: 149 KIPDHLTFSFSENNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 192 >gi|41323135|gb|AAR99797.1| small ribosomal protein 4 [Plagiochila stricta] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIKNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|18920759|gb|AAL82424.1| ribosomal protein system 4 [Orthothecium chryseum] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|290467487|gb|ADD25861.1| small ribosomal protein 4 [Hymenophyllum tortuosum] Length = 187 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD Sbjct: 18 QSSSKKVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKTKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ +S + + S+ Sbjct: 77 IVFQLGMSTTIPAARQLVNHRHILVNNNIVDIPSYRCKPKDLITLRNRSSSYSGSKKNSE 136 Query: 159 LAE-RDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+++ S + N+ V ++ + + + LVVE+YSR Sbjct: 137 FSRIKKIPDHLTFSFSEGNIPKGLVNGIANRESINLNI--NELLVVEYYSR 185 >gi|49182793|gb|AAT57858.1| small ribosomal protein [Riccia fluitans] Length = 187 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQ ++ +YG ++E++ + A +++ Sbjct: 4 PGLTNKTFKSKSGYINQSTSNKKXSQYRIRLEEKQNLRFHYG-LTERQLLKYVRIARKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNH+H+L+N +V+I SY CK D+I Sbjct: 63 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHQHILINNNTVDIPSYNCKPKDII 122 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + ++ +P +++ + +I ++ Y I + LV Sbjct: 123 TIKDRQKSQSIITKNLNFFQKQKIPNHLTFDLIQFKGLINQIVD--RECIYLKINEL-LV 179 Query: 201 VEFYSR 206 VE+YSR Sbjct: 180 VEYYSR 185 >gi|32401854|gb|AAP80915.1| small ribosomal protein 4 [Phyllocladus aspleniifolius] Length = 204 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K K S + ++L KQK++ +YG +++++ + A R++G T + LE RLD I Sbjct: 10 REKEKKSRYRVRLEEKQKLRFHYG-LTDRQLLQYVRIARRAKGSTGQVFLQLLEMRLDNI 68 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 ++R TI ARQ VNHRH+LVNGR V+I SYRCK DVI +K + + Sbjct: 69 IFRLGMALTIPGARQLVNHRHILVNGRIVDIPSYRCKPKDVIIIKDQQR 117 >gi|37992497|gb|AAR06427.1| small ribosomal protein 4 [Distichophyllum freycinetii] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G + +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGI-LPGLTNKVLQLKS--SSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN V+ Sbjct: 58 LLNYVRVARKAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNNFIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN---HDNMVATFVRIPS- 184 I SYRCK D I +K + K + + + ++ +P +++ N +V + S Sbjct: 118 IPSYRCKPQDFITIKSQQKSEVIINKNIEFYQKYKIPNHLTYNSLEKKGLVNQILDCESI 177 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 LK + LVVE+YSR Sbjct: 178 GLK-------INELLVVEYYSR 192 >gi|18920733|gb|AAL82411.1| ribosomal protein system 4 [Catagonium nitens] Length = 195 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 152 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|16565365|gb|AAL26201.1|AF313594_1 small ribosomal protein 4 [Ophioglossum reticulatum] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 16/200 (8%) Query: 13 RRIGENLWG-RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G NL G KSP +S G G Q K S + ++L AKQ+++ YG ++E++ Sbjct: 3 RRLG-NLPGLTKKSP---KSEGIG-SDQPVSKKISQYCIRLEAKQRLRLNYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A R+RG T + LE RLD I++R PTI ARQ VNHRH+LVN R V++ Sbjct: 57 KYVRIARRARGSTGQVSLQLLEMRLDNIIFRLGMSPTIPGARQLVNHRHILVNDRVVDVP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEY--ISVNHDNMVATFVRIPSSL 186 SY C D+I V+ + + +E+S E ++P + +S++ + + FV Sbjct: 117 SYCCGPNDIITVRDRKNSQDLIRKNMESS--YESEIPNHLSLSLSKSDKLKGFVNRIIDR 174 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + V L+VE+YSR Sbjct: 175 ESIGLEV--NELLIVEYYSR 192 >gi|75858242|gb|ABA28695.1| small ribosomal protein 4 [Syzygiella geminifolia] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ GD++ Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNGVVDIPSYNCEPGDIL 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K + + + + L ++ +P +++ + + FV + + V + LV Sbjct: 127 TTRNKQKSQSIITKNTNLFQKVKIPSHLTFDLIQLRG-FVNQMVNREWVNLKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67035859|gb|AAY62856.1| small ribosomal protein subunit 4 [Warburgiella leucocytus] Length = 194 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + +++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDSMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLINQI---LDRESIDLKINELLVVEYYSR 192 >gi|63191749|gb|AAY34834.1| small ribosomal protein subunit 4 [Groutiella tomentosa] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNYRIVDIPSYRCKPLDFITIKDRRK 133 >gi|328488160|gb|AEB19893.1| small ribosomal protein 4 [Pachyschistochila nivicola] gi|328488162|gb|AEB19894.1| small ribosomal protein 4 [Pachyschistochila subhyalina] gi|328488166|gb|AEB19896.1| small ribosomal protein 4 [Pachyschistochila virescens] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 AIKNKKKSQSMITRNLNLLQKLKIPNHLTFDSTQLRGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|328541096|gb|AEB21772.1| ribosomal protein S4 [Mastigobryum limbatum] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 97 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNL 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 157 KIPSHLTFDSIKLCGS---INQTINREWVNLKINELLVVEYYSR 197 >gi|125662722|gb|ABN50311.1| small ribosomal protein 4 [Ephedra tweediana] Length = 203 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 16 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 75 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 134 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 135 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 191 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 192 EMLVIEYYSR 201 >gi|42794650|gb|AAS45722.1| Rps4 [Disterigma ovatum] Length = 211 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 11/159 (6%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++ ++ + A +++G T L+ LE RLD I++R TI ARQ Sbjct: 53 KQKLRFHYG-LTXRQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQ 111 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEY 167 VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + + VP + Sbjct: 112 LVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIENSFQNLFDLPSRKRKRNRVPYH 171 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++N +I ++ K V + + LVVE+YSR Sbjct: 172 LTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|7576571|gb|AAF63898.1| ribosomal protein system 4 [Hypnum lindbergii] Length = 190 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKSK + + Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQQKSKTIIT 139 >gi|93213406|gb|ABF01129.1| ribosomal protein subunit 4 [Catagonium brevicaudatum] Length = 199 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|74273147|gb|ABA01273.1| ribosomal protein S4 [Passiflora vespertilio] Length = 185 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|51860497|gb|AAU11385.1| ribosomal protein small subunit 4 [Ephedra sinica] gi|51860527|gb|AAU11400.1| ribosomal protein small subunit 4 [Ephedra coryi] gi|51860541|gb|AAU11407.1| ribosomal protein small subunit 4 [Ephedra triandra] gi|51860563|gb|AAU11418.1| ribosomal protein small subunit 4 [Ephedra altissima var. algerica] gi|51860579|gb|AAU11426.1| ribosomal protein small subunit 4 [Ephedra major subsp. procera] Length = 200 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 13 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 71 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 72 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 131 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 132 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 188 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 189 EMLVIEYYSR 198 >gi|328488156|gb|AEB19891.1| small ribosomal protein 4 [Pachyschistochila childii] Length = 191 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 AIKNKKKSQSMITRNLNLLQKLKIPNHLTFDSTQLRGL---VNERIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|294337176|emb|CAQ52738.1| ribosomal protein S4 [Hylocomiastrum pyrenaicum] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + ++ +PE Y S+ +V Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITIKNQRKSETIISKNIDFYQKYKIPEHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|118626091|emb|CAL41754.1| small ribosomal protein 4 [Cephalozia lunulifolia] gi|118626099|emb|CAL39351.1| small ribosomal protein 4 [Cephalozia lunulifolia] Length = 202 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQSLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNNNIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 138 TIRNKQKSKSMITKNLNLFQKLKMPSHLTFDLTQLEGSVNQMVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|32401808|gb|AAP80892.1| small ribosomal protein 4 [Kadsura japonica] Length = 184 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 18 QSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I + + + A + + Sbjct: 77 ILFRLGMASTIPGARQLVNHRHILVNDRLVDIPSYRCKPRDIITTRDEHRSRALIQNSID 136 Query: 159 LA-ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P++++++ +I S K V + LVVE+YSR Sbjct: 137 SSPNEELPKHLTLHSLQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 182 >gi|67036122|gb|AAY62987.1| small ribosomal protein subunit 4 [Taxiphyllopsis iwatsukii] Length = 192 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKSQDFITIKNKRK 134 >gi|77862551|gb|ABB04548.1| small ribosomal protein 4 [Plagiochasma wrightii] Length = 201 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N ++I SY CK D I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNPIDIPSYNCKPKDTI 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P +++ + ++ +I ++ Y I + LV Sbjct: 137 TIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLMHVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|48527405|gb|AAT45835.1| small ribosomal protein 4 [Plagiochila porelloides] Length = 202 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCELGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|7576643|gb|AAF63934.1| ribosomal protein system 4 [Hookeria acutifolia] Length = 189 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEILLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+ VN VNI SYRCK D I +K + K A + Sbjct: 88 GMAPTIPGARQLVNHRHIGVNNCIVNIPSYRCKPQDFITIKNQQKSEAII 137 >gi|12330504|gb|AAG52789.1| ribosomal protein 4 [Schlotheimia rugifolia] Length = 189 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++D Sbjct: 87 GMAPTIPGARQLVNHRHILVNYCIVDIPSYRCKPQDSITIKDRQKSQDIINKNIDFYQKD 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L+ + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGLVNQI---LERELIGLKINELLVVEYYSR 187 >gi|51860537|gb|AAU11405.1| ribosomal protein small subunit 4 [Ephedra rupestris] Length = 206 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 19 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 78 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 137 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 138 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 194 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 195 EMLVIEYYSR 204 >gi|18920753|gb|AAL82421.1| ribosomal protein system 4 [Myurella acuminata] Length = 198 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAII 145 >gi|18027962|gb|AAL55905.1| ribosomal protein S4 [Eriosorus myriophyllus] gi|18027964|gb|AAL55906.1| ribosomal protein S4 [Eriosorus myriophyllus] Length = 191 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L KQK++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 24 QSASKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R TI AARQ VNHRH+LVN V+I SYRCK D+I ++ K +V + Sbjct: 83 IIFRLGMASTIPAARQLVNHRHILVNECVVDIPSYRCKPKDIITIR-KRPIFHNVAKNES 141 Query: 159 LAERDVPEYISVNHDNM--VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++++ V +S + V + LVVE+YSR Sbjct: 142 IGRAGLPDHLTISFSKAGDPVGLVNHMASRESVDLEI--NELLVVEYYSR 189 >gi|46486570|gb|AAS98721.1| ribosomal protein subunit 4 [Racopilum spectabile] Length = 200 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRF 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R VNI SYRCK D I +K QKS+ + S Sbjct: 98 GVAPTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITIKDRQKSQAITS 148 >gi|309322181|ref|YP_003934096.1| ribosomal protein S4 [Geranium palmatum] gi|197131486|gb|ACH47261.1| ribosomal protein S4 [Geranium palmatum] gi|300069274|gb|ADJ66395.1| ribosomal protein S4 [Geranium palmatum] Length = 199 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 26/189 (13%) Query: 34 PGLHGQR---------RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL +R R SK + ++L+ KQK++ +YG ++E++ + A +++G T Sbjct: 19 PGLTTKRPPDKSKSNPRFSKKKEYQIRLKEKQKLRFHYG-LTERQLLKYVRIAGKAKGPT 77 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I + Sbjct: 78 GPVLLQLLEMRLDNTLFRLGMASTIPQARQLVNHRHILVNGRMVDIPSYRCKPRDIITAR 137 Query: 145 QKSKQ---LASVLEASQLAERDVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQP 197 +K K + + L++S +P +++++ + +V + R LK ++ Sbjct: 138 EKEKSRTLIQNYLDSS--PHNKLPYHLTIHPLQYKGLVNQIIARGWVGLK-------IKE 188 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 189 LLVVEYYSR 197 >gi|125662724|gb|ABN50312.1| small ribosomal protein 4 [Ephedra trifurca] Length = 203 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 16 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 75 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 134 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 135 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 191 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 192 EMLVIEYYSR 201 >gi|77862519|gb|ABB04532.1| small ribosomal protein 4 [Conocephalum japonicum] Length = 181 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 20 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+L+N +V+I SY CK D+I +K + K + + + + ++ Sbjct: 79 GMTPTIPGARQLVNHRHILINNITVDIPSYNCKPKDIITIKDRQKSQSIITKNLKSFQKP 138 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S + + +I ++ Y I + LVVE+YSR Sbjct: 139 KIPNHLSFDLIQIKGLVNQIID--REWIYLKINEL-LVVEYYSR 179 >gi|121761775|gb|ABM64974.1| ribosomal protein S4 [Plagiomnium rhynchophorum] gi|121761798|gb|ABM64985.1| ribosomal protein S4 [Plagiomnium integrum] gi|121761800|gb|ABM64986.1| ribosomal protein S4 [Plagiomnium rhynchophorum] Length = 195 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R ++I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLIDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 193 >gi|294337254|emb|CAQ52776.1| ribosomal protein S4 [Pseudotaxiphyllum fauriei] Length = 202 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPKDFITIKNQRKSEAIISKNIEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|49182665|gb|AAT57795.1| small ribosomal protein [Adelanthus lindenbergianus] Length = 195 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYVDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ G++I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDIVDIPSYNCEPGNII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P +++ + + FV + + V + LV Sbjct: 131 TIKNKQKSQSIITKNINLFQNLKIPSHLTFDSIQLRG-FVNQTVNREWVNLKI--NELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|42405296|gb|AAS13474.1| rps4 small ribosomal protein [Callicostella colombica] Length = 194 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDSITIKNQQKSETIISKNLEFYQKI 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 192 >gi|37992709|gb|AAR06533.1| small ribosomal protein 4 [Trachyxiphium vagum] Length = 194 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K++ K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKKQRKSEAIISKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|51458192|gb|AAU03443.1| ribosomal protein small subunit 4 [Asplenium angustum] Length = 190 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ +NHRH+LVN V+I SYRCK D+I V+ + ++ L Sbjct: 82 VLFHLGMASTIPAARQLINHRHILVNNCIVDIPSYRCKPKDLISVRNRLTS-SNALRNKS 140 Query: 159 LAERDVPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++ ++ D V ++ + + + LVVE+YSR Sbjct: 141 LVGEKTPDHLTFALSEDGRPTGLVNRIANRESINLNI--NELLVVEYYSR 188 >gi|308746029|ref|YP_003934560.1| ribosomal protein S4 [Cheilanthes lindheimeri] gi|302375462|gb|ADL29836.1| ribosomal protein S4 [Cheilanthes lindheimeri] Length = 195 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V + Sbjct: 87 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAV-KGES 145 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 146 FGRDEVPDHLTL 157 >gi|37992555|gb|AAR06456.1| small ribosomal protein 4 [Hookeria acutifolia] Length = 199 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEILLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+ VN VNI SYRCK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHIGVNNCIVNIPSYRCKPQDFITIKNQQKSEAII 146 >gi|46811028|gb|AAT01832.1| small ribosomal protein 4 [Metzgeria conjugata] Length = 197 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 14 PGLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 73 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 132 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 +K + + + ++E + L + +P ++ + ++ + R I D+ + L Sbjct: 133 TIKNQERYRSIIMERLNSLQKPGIPNHLVFDSTKLIGSVNRMINREWIDLK----INELL 188 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 189 VVEYYSR 195 >gi|37992647|gb|AAR06502.1| small ribosomal protein 4 [Pilotrichidium antillarum] Length = 194 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDCESIGLKINELLVVEYYSR 192 >gi|37992715|gb|AAR06536.1| small ribosomal protein 4 [Trachypus bicolor var. viridulus] Length = 189 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R SLK + LVVE+YSR Sbjct: 147 KIPNHLTYSSLEKKGLVIQILDRESVSLK-------INELLVVEYYSR 187 >gi|18920799|gb|AAL82444.1| ribosomal protein system 4 [Trachythecium verrucosum] Length = 197 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I YRCK D+I +K + K + + + +R Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDISGYRCKPQDLITIKNQQKSETIINKNIEFYQRF 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + L+VE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRQSIGLK-------INELLIVEYYSR 195 >gi|294337168|emb|CAQ52734.1| ribosomal protein S4 [Homaliodendron piniforme] Length = 202 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++ ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNTEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|66866214|gb|AAY57779.1| small ribosomal protein 4 [Plagiopus oederianus] Length = 208 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 101 GMAPTIPGARQLVNHRHILVNDRMVDIPSYRCKPQDFITIKDRQKSQAII 150 >gi|118626053|emb|CAL39335.1| small ribosomal protein 4 [Adelanthus lindenbergianus] Length = 191 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYVDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I SY C+ G++I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDIVDIPSYNCEPGNII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P +++ + + FV + + V + LV Sbjct: 127 TIKNKQKSQSIITKNINLFQNLKIPSHLTFDSIQLRG-FVNQTVNREWVNLKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67036082|gb|AAY62967.1| small ribosomal protein subunit 4 [Rigodium toxarion] Length = 199 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|118724461|gb|ABL10804.1| ribosomal protein small subunit 4 [Cheilanthes covillei] gi|118724473|gb|ABL10810.1| ribosomal protein small subunit 4 [Cheilanthes gracillima] Length = 195 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V + Sbjct: 87 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAV-KGES 145 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 146 FGRDEVPDHLTL 157 >gi|80974164|gb|ABB53775.1| small ribosomal subunit protein 4 [Hampeella alaris] Length = 196 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G NL G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 KIIRRLG-NLPGLTNKIPQLKS--NSINQSTSTKKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN VN Sbjct: 59 LLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDCIVN 118 Query: 130 IGSYRCKEGDVIEVK 144 I SYRCK D I VK Sbjct: 119 IPSYRCKPQDFIIVK 133 >gi|42718086|gb|AAS38465.1| rps4 [Tayloria dubyi] Length = 189 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDSITIKDRQKSQTIINKNIEFNQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP ++ N +I L + + LVVE+YSR Sbjct: 147 KVPNHLIYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|86438900|emb|CAJ55425.1| small ribosomal protein 4 [Plagiochila korthalsiana] Length = 198 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHIAINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIVT 150 >gi|11121137|emb|CAC14784.1| ribosomal protein subunit 4 [Hedwigia ciliata] Length = 185 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V I SYRCK D I +K + K A + + ++ Sbjct: 83 GMASTIPAARQLVNHRHILVNDHIVXIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKS 142 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 143 KIPNHLTYNSLQKKGLINQI---LDRELIGLKINELLVVEYYSR 183 >gi|63100979|gb|AAY33114.1| small ribosomal protein 4 [Herzogiella adscendens] Length = 199 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VBI SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVBIPSYRCKPQDFITIKNQRK 141 >gi|157272429|gb|ABV27029.1| ribosomal protein small subunit 4-like protein [Azolla rubra] Length = 203 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 96/170 (56%), Gaps = 12/170 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T + LE RLD I++ Sbjct: 37 KISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL-----ASVLEASQ 158 PTI AARQ VNHRH+LVN R V++ SYRCK D+I ++ + L ++E+S+ Sbjct: 96 GIAPTIPAARQPVNHRHILVNDRIVDVPSYRCKPKDIITIRNRPTSLNGLKRTGIIESSR 155 Query: 159 LAERDVPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++++ + DN V ++ + + + VVE+YSR Sbjct: 156 --GNQIPDHLTLSFSEDNRPKGLVNKTATRESIDLNI--NELSVVEYYSR 201 >gi|7576627|gb|AAF63926.1| ribosomal protein system 4 [Pseudocryphaea domingensis] Length = 190 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|63191677|gb|AAY34800.1| small ribosomal protein subunit 4 [Homaliodendron piniforme] Length = 199 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++ ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNTEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|121761855|gb|ABM65013.1| ribosomal protein S4 [Plagiomnium rhynchophorum] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R ++I SYRCK D I +K + K + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRLIDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 152 KIPDHLTYNSLNKNGLVNQI---LDRDFIDLKINELLVVEYYSR 192 >gi|190361251|gb|ACE76930.1| ribosomal protein small subunit 4 [Didymoglossum krausii] Length = 152 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S F ++L AKQ+++ YG +E++ + A R++G T L+ LE RLD IV++ Sbjct: 2 SQFCIRLEAKQRLRFNYGS-TERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIVFQLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHRH+LVN VNI SYRCK D+I + + Sbjct: 61 APTIPAARQLVNHRHILVNNCIVNIPSYRCKPKDLITLNSR 101 >gi|165935727|gb|ABY75160.1| ribosomal protein S4 [Asplenium australasicum] Length = 188 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + ++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSVNALRNKSL 139 Query: 159 LAERDVPEYIS 169 L ++ P++++ Sbjct: 140 LGDK-TPDHLT 149 >gi|49182724|gb|AAT57824.1| small ribosomal protein [Herzogobryum teres] Length = 195 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSASNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ VN +V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMTPTIPGARQLVNHGHISVNNDTVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ + + +++ + L ++ +P +++ + + + ++ + +LK + Sbjct: 131 TIRNRQRSQSTITKNLNLFQKSKIPSHLTFDLTQLQGSVNQMVNREWVNLK-------IN 183 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 184 ELLVVEYYSR 193 >gi|37992451|gb|AAR06404.1| small ribosomal protein 4 [Camptochaete vaga] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|18920781|gb|AAL82435.1| ribosomal protein system 4 [Pseudotaxiphyllum elegans] Length = 197 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 154 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|37992697|gb|AAR06527.1| small ribosomal protein 4 [Tetrastichium fontanum] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNNSIVDIPSYRCKPQDFITIKNQRK 136 >gi|18920735|gb|AAL82412.1| ribosomal protein system 4 [Catagonium nitens subsp. maritimum] Length = 197 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 154 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|18920761|gb|AAL82425.1| ribosomal protein system 4 [Orthothecium intricatum] Length = 188 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKS 145 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 186 >gi|289576408|dbj|BAI77778.1| ribosomal protein small subunit 4 [Hymenophyllum tunbrigense] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 30 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIVFQS 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+ VN V+I SYRCK D+I V+ + + E + R Sbjct: 89 GMSATIPAARQLVNHRHIWVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 148 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 149 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 192 >gi|228480563|gb|AAY62914.2| small ribosomal protein subunit 4 [Loeskeobryum brevirostre] Length = 194 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D J +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFJTIKNQQKSETIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|121761833|gb|ABM65002.1| ribosomal protein S4 [Plagiomnium cordatum] Length = 195 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R ++I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLIDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 153 KIPDHLTYNSLNKKGLVNQI---LDRDFIDLKINELLVVEYYSR 193 >gi|51458203|gb|AAU03448.1| ribosomal protein small subunit 4 [Asplenium friesiorum] Length = 189 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 22 QSTSRKTSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++R TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 81 VLFRLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRNKSL 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 VGDK-TPDHLTVSLAEGDKPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|99640045|emb|CAJ45146.1| putative ribosomal protein S4 gene [Sphaeropteris brunei] Length = 195 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 14/193 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 10 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 63 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 64 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 123 Query: 139 DVIEVKQKS---KQLASVLEASQLAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPV 193 D+I V+ + K L S + S + ++P+++ S+ DN V ++ + + + Sbjct: 124 DIITVRNRPTSYKGLRSGINESSRGD-EIPDHLTFSLLEDNRPKGLVNRIANRESIDLNI 182 Query: 194 IMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 183 --NELLVVEYYSR 193 >gi|37992565|gb|AAR06461.1| small ribosomal protein 4 [Camptochaete arbuscula] Length = 190 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|121761763|gb|ABM64968.1| ribosomal protein S4 [Plagiomnium rostratum] Length = 186 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N N +I L + + LVVE+YSR Sbjct: 144 KIPDHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 184 >gi|78102679|gb|ABB21553.1| small ribosomal protein 4 [Plagiochila korthalsiana] Length = 172 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKSKSSYIDRSTPNKXVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHIAINNDIVNIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRSIVT 143 >gi|289576432|dbj|BAI77790.1| ribosomal protein small subunit 4 [Hymenophyllum tunbrigense] Length = 195 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 31 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIVFQS 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+ VN V+I SYRCK D+I V+ + + E + R Sbjct: 90 GMSATIPAARQLVNHRHIWVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 149 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 150 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 193 >gi|197131484|gb|ACH47260.1| ribosomal protein S4 [Geranium macrorrhizum] Length = 199 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 10/124 (8%) Query: 34 PGLHGQR----RKSKPSY-----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL +R KS P + + ++L+ KQK++ +YG ++E++ + A +++G T Sbjct: 19 PGLTTKRPPDKSKSNPPFSKKKEYQIRLKEKQKLRFHYG-LTERQLLKYVRIAGKAKGPT 77 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++R TI ARQ +NHRH+LVNGR V+I SYRCK D+I + Sbjct: 78 GPVLLQLLEMRLDNTLFRLGMASTIPQARQLINHRHILVNGRMVDIPSYRCKPRDIITAR 137 Query: 145 QKSK 148 +K K Sbjct: 138 EKEK 141 >gi|7576659|gb|AAF63942.1| ribosomal protein system 4 [Loeskeobryum brevirostre] Length = 186 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 3/112 (2%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 +K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 TKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFR 83 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 84 LGMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 135 >gi|328541140|gb|AEB21794.1| ribosomal protein S4 [Telaranea palmata] Length = 200 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PK+ N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKANYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+L+N V+I SY C+ GDVI Sbjct: 75 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHILINNNIVDIPSYNCESGDVI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K + + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIKDKQRSRSIITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|108861070|gb|ABG21407.1| ribosomal protein small subunit 4 [Marsilea crenata] gi|108861072|gb|ABG21408.1| ribosomal protein small subunit 4 [Marsilea crenata] gi|108861092|gb|ABG21418.1| ribosomal protein small subunit 4 [Marsilea minuta] Length = 200 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 69 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 128 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D I V+ + V E+S+ E +P+++S++ Sbjct: 129 DNITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 163 >gi|63100977|gb|AAY33113.1| small ribosomal protein 4 [Bryostreimannia turgida] Length = 198 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|219973370|gb|ACL68571.1| ribosomal protein small subunit 4 [Marsilea minuta] Length = 187 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 11/156 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 1 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 55 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 56 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 115 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISV 170 D I V+ + V E+S+ E +P+++S+ Sbjct: 116 DNITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSL 149 >gi|125662718|gb|ABN50309.1| small ribosomal protein 4 [Ephedra sp. Tibet-7] Length = 205 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 40 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 99 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 158 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP Y++ N +I + KD+ + + LV+E+YSR Sbjct: 159 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEMLVIEYYSR 203 >gi|12330546|gb|AAG52810.1| ribosomal protein 4 [Hedwigia ciliata] Length = 186 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD I++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLXQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 84 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 143 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 144 KIPNHLTYNSLQKKGXVNQI---LDRELIGLKINELLVVEYYSR 184 >gi|18028004|gb|AAL55926.1| ribosomal protein S4 [Eriosorus longipetiolatus] Length = 186 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 1 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 55 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 56 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 115 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 116 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 173 Query: 195 MQPNLVVEFYSR 206 VVEFYSR Sbjct: 174 -NELFVVEFYSR 184 >gi|18027980|gb|AAL55914.1| ribosomal protein S4 [Eriosorus hispidulus] Length = 191 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 6 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 60 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 61 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 120 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 121 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 178 Query: 195 MQPNLVVEFYSR 206 VVEFYSR Sbjct: 179 -NELFVVEFYSR 189 >gi|67035921|gb|AAY62887.1| small ribosomal protein subunit 4 [Cratoneuron filicinum] Length = 199 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNKLKSETIISKNMEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|67035791|gb|AAY62826.1| small ribosomal protein subunit 4 [Pterigynandrum filiforme] Length = 199 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNYCMVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDREAIGLK-------INELLVVEYYSR 197 >gi|16930539|gb|AAL31952.1| ribosomal protein small subunit 4 [Athyrium filix-femina] Length = 162 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 6/163 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S F ++L AKQ+++ YG ++E++ + A +RG T + LE RLD +++ Sbjct: 2 SQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARGTRGSTGQVPLQLLEMRLDNVIFNLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP 165 TI AARQ VNHRH+LVN R V+I SYRCK D+I V+ + + L+ A +P Sbjct: 61 ASTIPAARQLVNHRHILVNNRIVDIPSYRCKPKDIITVRNRPTS-CNALKGESPAGDKIP 119 Query: 166 EYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ S++ N V ++ + V + LVVE+YSR Sbjct: 120 DHLTASLSEGNRPTGLVNRVANRESVNLNI--NELLVVEYYSR 160 >gi|118627504|emb|CAL39386.1| small ribosomal protein 4 [Diplophyllum taxifolium] Length = 202 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTFKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 V+ K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 138 TVRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSVNQMVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|37992721|gb|AAR06539.1| small ribosomal protein 4 [Weymouthia cochlearifolia] Length = 195 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|20531055|gb|AAM27350.1| ribosomal protein 4 [Tetrodontium brownianum] Length = 176 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 2/137 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD +++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + +++ Sbjct: 74 GMALTIPGARQLVNHRHILVNNHIVNIPSYRCKPQDFITIKDRQKSQNIIAKNIDFSQKF 133 Query: 163 DVPEYISVNHDNMVATF 179 VP +++ N F Sbjct: 134 KVPNHLTFNFSQKKGLF 150 >gi|51860507|gb|AAU11390.1| ribosomal protein small subunit 4 [Ephedra nevadensis] Length = 200 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 35 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 94 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 153 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP Y++ N +I + KD+ + + LV+E+YSR Sbjct: 154 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEMLVIEYYSR 198 >gi|37548839|gb|AAO32688.1| ribosomal protein 4 [Dawsonia polytrichoides] Length = 154 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 17/162 (10%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L KQK++ +YG I+E++ + + A R++G T L+ LE RLD I++R PTI Sbjct: 1 LEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPG 59 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYI 168 ARQ VNH+H+LVN VNI SYRCK D I +K + K +A ++ SQ + +P ++ Sbjct: 60 ARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQNIIAKNIDFSQ--KYKIPNHL 117 Query: 169 ---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 S+ +V + R LK + LVVE+YSR Sbjct: 118 IFNSLERKGLVNQILDRESIGLK-------INELLVVEYYSR 152 >gi|22091487|emb|CAC86576.1| small ribosomal protein S4 [Cyathophorella tonkinensis] Length = 197 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K A + + + ++ Sbjct: 95 GMSPTIPGARQLVNHRHILVNDSIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|290467491|gb|ADD25863.1| small ribosomal protein 4 [Hymenophyllum tunbrigense] gi|290467493|gb|ADD25864.1| small ribosomal protein 4 [Hymenophyllum tunbrigense] Length = 187 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+ VN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GMSATIPAARQLVNHRHIWVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 141 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 142 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 185 >gi|49182736|gb|AAT57830.1| small ribosomal protein [Jungermannia crenuliformis] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKPKSSYIDRSSSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCQLGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + ++ + + LV Sbjct: 131 TVKNKQKSQSMITKNINLFQKLKIPSHLTFDSIELRGY---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37992471|gb|AAR06414.1| small ribosomal protein 4 [Crosbya straminea] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQKKSEVIINKNIEFYQKS 151 Query: 164 -VPEYISVN---HDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + S LK + LVVE+YSR Sbjct: 152 KIPTHLTYNSLEKKGLVNQILDCESIGLK-------INELLVVEYYSR 192 >gi|37992655|gb|AAR06506.1| small ribosomal protein 4 [Pilotrichella flexilis] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|23504383|emb|CAC81062.1| small ribosomal protein 4 [Dendrocyathophorum decolyi] Length = 198 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NH+H+LVN V+I SYRCK D I +K + K A + + +L ++ Sbjct: 96 GMAPTIPGARQLINHKHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIELYQKY 155 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLIYNSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|12330558|gb|AAG52816.1| ribosomal protein 4 [Catagonium nitens] Length = 189 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A ++ G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRXARKAXGSTGQVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKXQRKSEAIISKNIEFYQKS 146 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|227439283|gb|ACP31318.1| ribosomal protein small subunit 4 [Pteridium arachnoideum] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 142 LGEK-IPDHLTLSLSEGSKPTGLVNRIASRESVNLNI--NELLVVEYYSR 188 >gi|222103530|gb|ACM44294.1| small ribosomal protein subunit 4 [Plagiothecium platyphyllum] Length = 198 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 155 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|108861094|gb|ABG21419.1| ribosomal protein small subunit 4 [Marsilea minuta] Length = 196 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 10 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 65 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 124 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D I V+ + V E+S+ E +P+++S++ Sbjct: 125 DNITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 159 >gi|118627520|emb|CAL39394.1| small ribosomal protein 4 [Lophozia ascendens] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQXLLQLLEMRLDNTIFRLGMAXTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + ++ + + LV Sbjct: 138 TIRNKQKSQSIITKNLNLFXKMKIPSHLTFDLTQLQGX---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|77862561|gb|ABB04553.1| small ribosomal protein 4 [Targionia hypophylla] Length = 201 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLINKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILLNNNIVDIPSYNCKPKDII 136 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K + + + + ++ +P ++ + D M + + ++ Y I + LV Sbjct: 137 TIKDRQKSQSIITKNLNSFQKQKIPNHLIL--DLMQIKGLVNQTIDREWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|29422363|gb|AAO84577.1| small ribosomal protein 4 [Bartramia mathewsii] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRC D I +K + K A + + ++ Sbjct: 97 GMASTIPGARQLVNHRHILVNDRIVDIPSYRCXPHDFITIKDRPKSXAIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ +I L + + LVVE+YSR Sbjct: 157 EIPNHLTYGSSENKGLVNQI---LDRESIGLXINEXLVVEYYSR 197 >gi|18027988|gb|AAL55918.1| ribosomal protein S4 [Eriosorus rufescens] gi|18027990|gb|AAL55919.1| ribosomal protein S4 [Eriosorus rufescens] gi|18027998|gb|AAL55923.1| ribosomal protein S4 [Eriosorus congestus] gi|18028000|gb|AAL55924.1| ribosomal protein S4 [Eriosorus novogranatensis] gi|18028002|gb|AAL55925.1| ribosomal protein S4 [Eriosorus novogranatensis] gi|18028006|gb|AAL55927.1| ribosomal protein S4 [Jamesonia goudotii] gi|18028008|gb|AAL55928.1| ribosomal protein S4 [Jamesonia goudotii] gi|18028012|gb|AAL55930.1| ribosomal protein S4 [Jamesonia peruviana] gi|18028014|gb|AAL55931.1| ribosomal protein S4 [Jamesonia peruviana] gi|18028016|gb|AAL55932.1| ribosomal protein S4 [Jamesonia peruviana] Length = 191 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 6 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 60 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 61 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 120 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 121 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 178 Query: 195 MQPNLVVEFYSR 206 VVEFYSR Sbjct: 179 -NELFVVEFYSR 189 >gi|11121337|emb|CAC14830.1| ribosomal protein subunit 4 [Plagiothecium undulatum] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|63101045|gb|AAY33147.1| small ribosomal protein 4 [Baldwiniella kealeensis] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLKKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|212004245|gb|ACJ15431.1| Rps4 [Cheilanthes yavapensis] Length = 182 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 15 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V + Sbjct: 74 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAV-KGES 132 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 133 FGRDEVPDHLTL 144 >gi|108861080|gb|ABG21412.1| ribosomal protein small subunit 4 [Marsilea fadeniana] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 11/157 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 13 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 68 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 127 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVN 171 D I V+ + V E+S+ E +P+++S++ Sbjct: 128 DNITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSLS 162 >gi|77862523|gb|ABB04534.1| small ribosomal protein 4 [Cryptomitrium himalayense] Length = 201 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 23/189 (12%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L+N ++I SY CK D+I Sbjct: 77 GSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNLIDIPSYNCKPKDLI 136 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPN- 198 +K + K + + + ++ +P NH T V+ + + + D + + ++ N Sbjct: 137 TIKDRPKSKSIITKNLNCFQKPKIP-----NHLTFDLTQVKGLVNQVIDREW-IFLKINE 190 Query: 199 -LVVEFYSR 206 LVVE+YSR Sbjct: 191 LLVVEYYSR 199 >gi|42794716|gb|AAS45753.1| Rps4 [Thibaudia floribunda] Length = 211 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K ++L+ KQK++ +YG +++++ + +++G L+ LE RLD I++ Sbjct: 40 KKKKXQXHIRLQEKQKLRFHYG-LTDRQLLKYVRIXGKAKGSPGQVLLQLLEMRLDNILF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKQKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|18920769|gb|AAL82429.1| ribosomal protein system 4 [Plagiothecium denticulatum] Length = 197 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|63191671|gb|AAY34797.1| small ribosomal protein subunit 4 [Pylaisia polyantha] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKXKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VBI SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVBIPSYRCKPQDFITIKNQRK 141 >gi|219973354|gb|ACL68563.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973356|gb|ACL68564.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973358|gb|ACL68565.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973360|gb|ACL68566.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973362|gb|ACL68567.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973364|gb|ACL68568.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973366|gb|ACL68569.1| ribosomal protein small subunit 4 [Marsilea minuta] gi|219973368|gb|ACL68570.1| ribosomal protein small subunit 4 [Marsilea minuta] Length = 188 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 11/156 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P +R Q K S + ++L AKQ+++ YG ++E++ + A Sbjct: 2 LTGKAPNPRESRVAA----DQSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE RLD IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ Sbjct: 57 KTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQ 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISV 170 D I V+ + V E+S+ E +P+++S+ Sbjct: 117 DNITVRNRPTSYNVLKGGVFESSRSNE--IPDHLSL 150 >gi|41323093|gb|AAR99776.1| small ribosomal protein 4 [Plagiochila buchtiniana] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNYIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|37992439|gb|AAR06398.1| small ribosomal protein 4 [Callicostellopsis meridensis] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDFIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKV 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|67036088|gb|AAY62970.1| small ribosomal protein subunit 4 [Tripterocladium leucocladulum] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|63191685|gb|AAY34804.1| small ribosomal protein subunit 4 [Leptodictyum riparium] gi|63191687|gb|AAY34805.1| small ribosomal protein subunit 4 [Warnstorfia exannulata] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSETIIS 142 >gi|42541366|gb|AAS19534.1| ribosomal protein small subunit 4 [Selliguea laciniata] Length = 179 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 17 KISQXCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + ++ ++ Sbjct: 76 GLASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNRPTSYNALRNKFTGGDK- 134 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ DN V ++ + V + LVVE+YSR Sbjct: 135 TPDHLTISLSEDNKPTGLVNCVANRESVNLNI--NELLVVEYYSR 177 >gi|289599931|gb|ADD12916.1| ribosomal protein S4 [Hibbertia salicifolia] Length = 163 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 19/172 (11%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 TI ARQ VNHRH+LVN R V+I SYRCK D+I VK + K + VL + L Sbjct: 60 LGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPRDIITVKDEHK--SRVLIQNYLD-- 115 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 S +H+ + P K + +I + LVVE+YSR Sbjct: 116 ------SFSHEELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYYSR 161 >gi|49182708|gb|AAT57816.1| small ribosomal protein [Goebeliella cornigera] Length = 197 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Query: 10 KIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 KI RR+G N +PKS RS K S + ++L KQK++ +YG Sbjct: 3 KIIRRLGALPGLTNKTPKPKSSYIDRSTSSN-------KKISQYRIRLEEKQKLRFHYG- 54 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++ PTI ARQ VNHRH+ VN Sbjct: 55 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFCLGMTPTIPGARQLVNHRHISVN 114 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLAERDVPEYISVNHDNMVATFVRIP 183 +V+I SY C+ GD+I ++ K K + + + +R++P +++ + + + Sbjct: 115 NATVDIPSYNCEPGDIIAIRNKEKSQSIITRNINAFQKREIPNHLTFDLTQLQGL---VN 171 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 172 QTINREFIDLKVNELLVVEYYSR 194 >gi|46811014|gb|AAT01825.1| small ribosomal protein 4 [Herbertus alpinus] Length = 197 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + I ++ + + LV Sbjct: 133 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGF---INQTINREWINLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|37992703|gb|AAR06530.1| small ribosomal protein 4 [Thamniopsis pendula] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|37992489|gb|AAR06423.1| small ribosomal protein 4 [Dendrocyathophorum decolyi] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ +NH+H+LVN V+I SYRCK D I +K + K A + + +L ++ Sbjct: 92 GMAPTIPGARQLINHKHILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIELYQKY 151 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLIYNSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|17025808|gb|AAL32071.1| ribosomal protein 4 [Syrrhopodon mahensis] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A + +G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN VNI SY+CK D I +K + K +++ + + + Sbjct: 97 GLAPTIPGARQLVNHKHILVNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKH 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 157 KTPNHLTFNSIEKKGLVNQI---LDQESIGLKINELLVVEYYSR 197 >gi|23477322|gb|AAN34637.1| ribosomal protein small subunit 4 [Woodwardia auriculata] Length = 185 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + + L + Sbjct: 82 GMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDIITVRNRPTS-CNALRGESPGGGE 140 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ S++ N V ++ + V + LVVE+YSR Sbjct: 141 TPDHLTASLSEGNRPTGLVNRIANRESVNLNI--NELLVVEYYSR 183 >gi|33860967|ref|NP_892528.1| 30S ribosomal protein S4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|41017826|sp|Q7V2R1|RS4_PROMP RecName: Full=30S ribosomal protein S4 gi|33639699|emb|CAE18869.1| 30S ribosomal protein S4 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 12/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE L G + + +S PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVTRRLGE-LPGLTRK-ASKKSNPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F TI +RQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLRLLENRLDNVCFRLGFGGTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK--SKQLA-SVLEASQLAERDVPEYISVNHDNMVA 177 V +NG+ ++I Y+CK GDVI +K+ SK+L +E LA +VP +I ++ + Sbjct: 117 VTINGKVLDIAGYQCKPGDVISIKENKASKKLVEGNIEFPGLA--NVPPHIELDKPKLTG 174 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 175 ---KINGKCDREWVALEINELLVVEYYSR 200 >gi|270300675|gb|ACZ69416.1| ribosomal protein S4 [Radula aquilegia] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS R+ K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSISIDRAMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH+H ++N +VNI SY C+ GD+I ++ + K + + L ++ ++P +++ + Sbjct: 112 VNHKHFVINNFTVNIPSYNCELGDIITIRNRQKSKSIITRNMNLFQKLEIPNHLTFDSTQ 171 Query: 175 MVATF-VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + RI + + + + LVVE+YSR Sbjct: 172 LRGSINQRIDCN--SINFKI--NELLVVEYYSR 200 >gi|58293897|gb|AAW69895.1| small ribosomal protein 4 [Schlotheimia torquata] Length = 189 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++D Sbjct: 87 GMAPTIPGARQLVNHRHILVNYCIVDIPSYRCKPQDSITIKDRRKSQDIINKNIDFYQKD 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L+ + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGLVNQI---LERELIGLKINELLVVEYYSR 187 >gi|16565349|gb|AAL26194.1|AF313586_1 small ribosomal protein 4 [Selaginella deflexa] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV++N V+I SY CK GD+I ++ K K + + + L + Sbjct: 93 GMAPTIPGARQLVNHKHVVINNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNL 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 153 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 193 >gi|67035775|gb|AAY62818.1| small ribosomal protein subunit 4 [Hylocomiastrum pyrenaicum] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNKRK 141 >gi|301353380|ref|YP_003795582.1| ribosomal protein S4 [Pteridium aquilinum subsp. aquilinum] gi|301016298|gb|ADK47585.1| ribosomal protein S4 [Pteridium aquilinum subsp. aquilinum] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 28 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 87 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 146 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 147 LGEK-IPDHLTLSLSEGSKPTGLVNRIASRESVNLNI--NELLVVEYYSR 193 >gi|294337194|emb|CAQ52747.1| ribosomal protein S4 [Leptopterigynandrum sp. Koponen 46079] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFYQKS 159 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 KIPNHLTYNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 200 >gi|162415106|gb|ABX89127.1| ribosomal protein S4 [Tortula yuennanensis] Length = 189 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ YG I+E++ + + A +++G T L+ LE RLD +V+R Sbjct: 28 KISQYRIRLEXXQKLRFXYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I + + K +++ +++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPPDFISIXDRXKSQXXIIKNXDFSQKS 146 Query: 164 -VPEYISVN 171 VP ++S + Sbjct: 147 KVPNHLSFD 155 >gi|89147838|gb|ABD62767.1| ribosomal protein 4 [Podomitrium malaccense] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 14/151 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + SK SY + ++L KQK++ +YG ++E++ + A ++ Sbjct: 19 PGLSYKMLGSKSSYTNRLTTNRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD IV+R PTI AARQ VNHRH++++ +VNI SY CK G+VI Sbjct: 78 GSTGQILLQLLEMRLDNIVFRLGMAPTIPAARQLVNHRHIVIDENTVNIPSYNCKPGEVI 137 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVN 171 +K + + + + + L E+ +P +++ + Sbjct: 138 TIKNRRESQSIITKNVNLFREQRIPNHLTFD 168 >gi|48527351|gb|AAT45808.1| small ribosomal protein 4 [Plagiochila alternans] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K +++ + + + +P +++ + + + + + + + LV Sbjct: 138 TIGNKQKSQSAITKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWIDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|48527367|gb|AAT45816.1| small ribosomal protein 4 [Plagiochila deltoidea] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKALKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPNHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|16565376|gb|AAL26203.1|AF313602_1 small ribosomal protein 4 [Osmunda banksiifolia] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD Sbjct: 21 QSASKKISQFCIRLEAKQRLRFNYGS-TERQLLRYVRIARKAKGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 IV + PTI AARQ VNHRH+LVN V+I SYRCK D+ V+ ++ + + + Sbjct: 80 IVSESGMAPTIPAARQSVNHRHILVNDHIVDIPSYRCKPRDITTVRDRTSSYDRITKEIE 139 Query: 159 LAERD-VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ D +P++ +S++ DN V + + + LVVE+YSR Sbjct: 140 SSQGDKIPDHLTLSLSEDNRPKGLVNRIVNRDSIGLNI--NELLVVEYYSR 188 >gi|67035879|gb|AAY62866.1| small ribosomal protein subunit 4 [Clastobryopsis planula] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y+ S+ +V V R LK + LVVE+YSR Sbjct: 157 KIPNYLTYSSLEKKGLVNQIVDRELIGLK-------INELLVVEYYSR 197 >gi|67036118|gb|AAY62985.1| small ribosomal protein subunit 4 [Horridohypnum mexicanum] Length = 194 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNKRK 136 >gi|63191835|gb|AAY34877.1| small ribosomal protein subunit 4 [Streptopogon calymperes] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 97 GMALTIPGARQLVNHRHILVNDRIVNIPSYRCKPQDFITISDRKKSQVIITKNVDSSQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLIFNSLEKKGLINQI---LNQESIGLKINELLVVEYYSR 197 >gi|212004239|gb|ACJ15428.1| Rps4 [Cheilanthes newberryi] Length = 184 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 17 QSASKKISQFXVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V + Sbjct: 76 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAV-KGES 134 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 135 FGRDEVPDHLTL 146 >gi|227439285|gb|ACP31319.1| ribosomal protein small subunit 4 [Pteridium arachnoideum] gi|227439287|gb|ACP31320.1| ribosomal protein small subunit 4 [Pteridium arachnoideum] gi|227439293|gb|ACP31323.1| ribosomal protein small subunit 4 [Pteridium caudatum] gi|227439297|gb|ACP31325.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439299|gb|ACP31326.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439301|gb|ACP31327.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439303|gb|ACP31328.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439305|gb|ACP31329.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439307|gb|ACP31330.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439311|gb|ACP31332.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439313|gb|ACP31333.1| ribosomal protein small subunit 4 [Pteridium esculentum] gi|227439323|gb|ACP31338.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439325|gb|ACP31339.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439327|gb|ACP31340.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439329|gb|ACP31341.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439331|gb|ACP31342.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439333|gb|ACP31343.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439335|gb|ACP31344.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439337|gb|ACP31345.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439339|gb|ACP31346.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439341|gb|ACP31347.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439343|gb|ACP31348.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439345|gb|ACP31349.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439347|gb|ACP31350.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439349|gb|ACP31351.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439351|gb|ACP31352.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439353|gb|ACP31353.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] gi|227439409|gb|ACP31381.1| ribosomal protein small subunit 4 [Pteridium semihastatum] gi|227439411|gb|ACP31382.1| ribosomal protein small subunit 4 [Pteridium semihastatum] gi|227439413|gb|ACP31383.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. aquilinum] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 142 LGEK-IPDHLTLSLSEGSKPTGLVNRIASRESVNLNI--NELLVVEYYSR 188 >gi|118724497|gb|ABL10822.1| ribosomal protein small subunit 4 [Mildella intramarginalis] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 79/128 (61%), Gaps = 2/128 (1%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 +K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD ++++ Sbjct: 32 NKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDNVIFQ 90 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 TI AARQ VNHRH+LVNGR V+I SYR K D+I ++ + + + L Sbjct: 91 LGMASTIPAARQLVNHRHILVNGRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKSLGRD 149 Query: 163 DVPEYISV 170 +VP+++++ Sbjct: 150 EVPDHLTL 157 >gi|18028010|gb|AAL55929.1| ribosomal protein S4 [Jamesonia goudotii] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 5 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 59 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 60 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 119 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 120 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 177 Query: 195 MQPNLVVEFYSR 206 VVEFYSR Sbjct: 178 -NELFVVEFYSR 188 >gi|58293871|gb|AAW69883.1| small ribosomal protein 4 [Orthotrichum assimile] gi|116517476|gb|ABJ99092.1| ribosomal protein subunit 4 [Orthotrichum freyanum] gi|116517478|gb|ABJ99093.1| ribosomal protein subunit 4 [Orthotrichum freyanum] Length = 189 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H++VN R V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N FV K + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKG-FVNQILDRKLIGLKI--NELLVVEYYSR 187 >gi|118430304|ref|YP_874738.1| ribosomal protein S4 [Agrostis stolonifera] gi|125987750|sp|A1EA10|RR4_AGRST RecName: Full=30S ribosomal protein S4, chloroplastic gi|118201213|gb|ABK79582.1| ribosomal protein S4 [Agrostis stolonifera] Length = 201 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 15/210 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGK-LPKHLTID----TLE 170 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 171 YKGLVNKILDRKW-VGLKINELLVVEYYSR 199 >gi|51860513|gb|AAU11393.1| ribosomal protein small subunit 4 [Ephedra funerea] Length = 196 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK+ +YG ++E++ R A ++ Sbjct: 9 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIXFHYG-LTERQLRQYVHIAKNAQ 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 68 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDII 127 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y++ N +I + KD+ + + Sbjct: 128 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--K 184 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 185 EMLVIEYYSR 194 >gi|18920771|gb|AAL82430.1| ribosomal protein system 4 [Plagiothecium latebricola] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|46486540|gb|AAS98706.1| ribosomal protein subunit 4 [Hampeella alaris] Length = 198 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G NL G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 6 KIIRRLG-NLPGLTNKIPQLKS--NSINQSTSTKKISQYRIRLEEKQKLRFHYG-ITERQ 61 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN VN Sbjct: 62 LLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDCIVN 121 Query: 130 IGSYRCKEGDVIEVK 144 I SYRCK D I VK Sbjct: 122 IPSYRCKPQDFIIVK 136 >gi|7576593|gb|AAF63909.1| ribosomal protein system 4 [Pilotrichella flexilis] Length = 189 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|67035857|gb|AAY62855.1| small ribosomal protein subunit 4 [Paranapiacabaea paulista] Length = 184 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDYMVDIPSYRCKPQDFITIKNQHK 129 >gi|63191757|gb|AAY34838.1| small ribosomal protein subunit 4 [Schlotheimia torquata] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++D Sbjct: 93 GMAPTIPGARQLVNHRHILVNYCIVDIPSYRCKPQDSITIKDRRKSQDIINKNIDFYQKD 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L+ + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LERELIGLKINELLVVEYYSR 193 >gi|26399108|sp|P59144|RR4_HYPFI RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504359|emb|CAC81023.1| small ribosomal protein 4 [Hypopterygium filiculaeforme] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMK 59 MS+ + KI RR+G P T L Q +K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG----ALPGLTNKTPQLKSNLINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 116 HILVNDYIVDIPSYRCKPQDFITIKNQRKSESIINKNINFYQKYKIPNHLTYNSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKVNELLVVEYYSR 200 >gi|227439289|gb|ACP31321.1| ribosomal protein small subunit 4 [Pteridium caudatum] gi|227439315|gb|ACP31334.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pinetorum] gi|227439319|gb|ACP31336.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pinetorum] gi|227439321|gb|ACP31337.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pinetorum] gi|227439355|gb|ACP31354.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. capense] gi|227439357|gb|ACP31355.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. capense] gi|227439359|gb|ACP31356.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. capense] gi|227439361|gb|ACP31357.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. capense] gi|227439363|gb|ACP31358.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. capense] gi|227439365|gb|ACP31359.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. capense] gi|227439367|gb|ACP31360.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. centrali-africanum] gi|227439369|gb|ACP31361.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. centrali-africanum] gi|227439371|gb|ACP31362.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. centrali-africanum] gi|227439373|gb|ACP31363.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. decompositum] gi|227439375|gb|ACP31364.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439377|gb|ACP31365.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439379|gb|ACP31366.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439381|gb|ACP31367.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439383|gb|ACP31368.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439385|gb|ACP31369.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439387|gb|ACP31370.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439389|gb|ACP31371.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. japonicum] gi|227439391|gb|ACP31372.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. latiusculum] gi|227439393|gb|ACP31373.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. latiusculum] gi|227439395|gb|ACP31374.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. latiusculum] gi|227439397|gb|ACP31375.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. latiusculum] gi|227439399|gb|ACP31376.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. latiusculum] gi|227439403|gb|ACP31378.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pseudocaudatum] gi|227439405|gb|ACP31379.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pubescens] gi|227439407|gb|ACP31380.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pubescens] gi|227439415|gb|ACP31384.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439417|gb|ACP31385.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439419|gb|ACP31386.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439421|gb|ACP31387.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439423|gb|ACP31388.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439425|gb|ACP31389.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439427|gb|ACP31390.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] gi|227439431|gb|ACP31392.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pubescens] gi|227439433|gb|ACP31393.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pubescens] gi|227439435|gb|ACP31394.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pseudocaudatum] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 142 LGEK-IPDHLTLSLSEGSRPTGLVNRIASRESVNLNI--NELLVVEYYSR 188 >gi|118627510|emb|CAL39389.1| small ribosomal protein 4 [Harpanthus flotovianus] gi|118627530|emb|CAL41760.1| small ribosomal protein 4 [Geocalyx graveolens] Length = 202 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKPKSSYVDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ N + + + ++ + + LV Sbjct: 138 TVKNKQKSQSIITKNINLFQKLKIPSHLTFNSIELRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|49182718|gb|AAT57821.1| small ribosomal protein [Harpanthus scutatus] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKPKSSYVDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ N + + + ++ + + LV Sbjct: 131 TVKNKQKSQSIITKNINLFQKLKIPSHLTFNSIELRGS---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|42718088|gb|AAS38466.1| rps4 [Tayloria purpurascens] Length = 188 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKTKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + A + + + ++ Sbjct: 86 GMSPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKNRQNSQAIINKNIEFHQKY 145 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 146 KIPTHLIYNSLKKQGLVNQILDRESIGLK-------INELLVVEYYSR 186 >gi|18920773|gb|AAL82431.1| ribosomal protein system 4 [Plagiothecium neckeroideum] Length = 196 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 153 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 154 KIPNHLTYSSLEKKGLVNQILNRESIGLK-------INELLVVEYYSR 194 >gi|74273133|gb|ABA01266.1| ribosomal protein S4 [Passiflora rovirosae] Length = 183 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGRTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRIVDIPSYRCKPRDLITVKNEQKSKDM 129 >gi|227439291|gb|ACP31322.1| ribosomal protein small subunit 4 [Pteridium caudatum] Length = 190 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 142 LGEK-IPDHLTLSLSEGSRPTGLVNRIASRESVNLNI--NELLVVEYYSR 188 >gi|118724415|gb|ABL10781.1| ribosomal protein small subunit 4 [Pellaea maxima] Length = 195 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + + V +S + V + LVVE+YSR Sbjct: 146 LGRNEVPDHLTLSISKTSELTGLVNHMASRESVNLDI--NELLVVEYYSR 193 >gi|83416514|gb|ABC18277.1| small ribosomal subunit protein 4 [Herbertus aduncus] Length = 200 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK+ +YG ++E++ + A +++ Sbjct: 17 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLXFHYG-LTERQLLKYVRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 76 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIPSYXCEPGDII 135 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVN----HDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + H ++ R +LK + Sbjct: 136 TIKNKQKXQSIITKNINLFQKLKIPNHLTFDLTKLHGSVNQMINREWVNLK-------IN 188 Query: 197 PNLVVEFYSR 206 L VE+YSR Sbjct: 189 ELLXVEYYSR 198 >gi|51458197|gb|AAU03445.1| ribosomal protein small subunit 4 [Asplenium protensum] Length = 188 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 21 QSTSRKTSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++R TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 80 VLFRLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRNKSL 139 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 140 VGDK-TPDHLTVSLAEGDKPAGLVNRVANRESINLNINEL---------LVVEYYSR 186 >gi|78102693|gb|ABB21560.1| small ribosomal protein 4 [Plagiochila minutula] Length = 189 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLESKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ FLE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQFLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 131 TIRNKQKSQSAI 142 >gi|117306754|emb|CAH73346.1| ribosomal protein S4 [Catagonium nitidum] Length = 183 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 140 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 141 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 181 >gi|2739258|emb|CAA10996.1| 30S ribosomal protein S4 [Prototheca wickerhamii] Length = 161 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 100/166 (60%), Gaps = 9/166 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 SK S +G++L+ K K++ YG I+E++ + +EA R +G T L+ LE RLD I+YR Sbjct: 1 SKESQYGIRLKEKTKLRYNYG-INERQLINYVREARRRKGSTGEVLLQLLEMRLDNIIYR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA-SVLEASQLAE 161 F PTI AARQ +NH H+ VN +++NI SY CK D+I V + S+QL + L+ ++E Sbjct: 60 LGFAPTIPAARQLINHGHINVNNKNINIPSYICKINDIISVLKNSQQLIKNYLQNGGISE 119 Query: 162 RDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNLVVEFYSR 206 + +++N + + A+ IP L + + LV+E+YSR Sbjct: 120 --LSTCLNLNKEKLEASINNIIPRDLVKLE----INELLVIEYYSR 159 >gi|67036084|gb|AAY62968.1| small ribosomal protein subunit 4 [Pilotrichella flexilis] Length = 199 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|32401832|gb|AAP80904.1| small ribosomal protein 4 [Ephedra chilensis] Length = 180 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 15 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 74 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 133 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP Y++ N +I + KD+ + + LV+E+YSR Sbjct: 134 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEMLVIEYYSR 178 >gi|47606920|gb|AAT36380.1| ribosomal protein subunit 4 [Pterogonium gracile] Length = 200 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 158 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 198 >gi|74273113|gb|ABA01256.1| ribosomal protein S4 [Passiflora capsularis] Length = 185 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGRTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRIVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|74273207|gb|ABA01303.1| ribosomal protein S4 [Passiflora sanguinolenta] Length = 185 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGRTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRIVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|117306736|emb|CAH73336.1| ribosomal protein S4 [Glyphothecium sciuroides] Length = 183 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNK 123 >gi|49182770|gb|AAT57847.1| small ribosomal protein [Odontolejeunea lunulata] Length = 192 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 99/183 (54%), Gaps = 14/183 (7%) Query: 34 PGLHGQRRKSKP---------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL G+ K+K S + ++L KQK++ +YG ++E++ + A +++G T Sbjct: 12 PGLTGKISKTKIDRSVLNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGST 70 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++ TI +ARQ VNH+H+ +N VNI SY CK GD+I +K Sbjct: 71 GQVLLQLLEMRLDNTIFCLGMATTIPSARQLVNHKHIFINNDIVNIPSYNCKPGDIITIK 130 Query: 145 QKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEF 203 K K + + + L+++ +P +++ + + + +++ + + LVVE+ Sbjct: 131 NKEKSQSIINKNMNLSKKLQIPNHLTFDSIQLRGL---VNQTIRREWINLKINELLVVEY 187 Query: 204 YSR 206 YSR Sbjct: 188 YSR 190 >gi|59803305|gb|AAX07761.1| Rps4 [Moerckia flotoviana] Length = 184 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K + + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD IV+R Sbjct: 23 KITXYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIVFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+++N +V+I SY CK DVI ++ + + + + + +R Sbjct: 82 GMAPTIPGARQLVNHRHIVINDGTVDIPSYSCKPRDVITIRDRKESRSIIARNMDIYQRR 141 Query: 164 VPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 V NH + +T R I + + + L+VE+YSR Sbjct: 142 VIP----NHLTLDSTHFRGSINQVIDREWIDLEINELLIVEYYSR 182 >gi|7576617|gb|AAF63921.1| ribosomal protein system 4 [Plagiothecium laetum] Length = 188 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|294337100|emb|CAQ52700.1| ribosomal protein S4 [Dacryophyllum falcifolium] Length = 202 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLESS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S++ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLDKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|222103560|gb|ACM44309.1| small ribosomal protein subunit 4 [Aulacomnium turgidum] Length = 202 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTTKTPQLKSS---SIDQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K A + + L ++ +P Y S+ +V Sbjct: 117 ILVNDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKYKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|116517480|gb|ABJ99094.1| ribosomal protein subunit 4 [Orthotrichum assimile] Length = 177 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H++VN R V+I SYRCK D I +K + K + + ++ Sbjct: 75 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKY 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N FV K + + LVVE+YSR Sbjct: 135 KIPNHLTYNSLEKKG-FVNQILDRKLIGLKI--NELLVVEYYSR 175 >gi|33413199|emb|CAD86735.1| ribosomal protein small subunit 4 [Leucoloma sprengelianum] Length = 188 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD ++ R Sbjct: 27 KISQYRVRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVISRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + L+ + +++ Sbjct: 86 GIAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKDRQNFQNMTLKNTGFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I + + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLEKKGLVNQI---IDQESIGLKINELLVVEYYSR 186 >gi|46486586|gb|AAS98729.1| ribosomal protein subunit 4 [Rutenbergia madagassa] Length = 200 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKYEAIISKNIEFYQKS 157 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 158 KIPNHLTYSSLEKKGLVNQI---LDSESIGLKINELLVVEYYSR 198 >gi|7576515|gb|AAF63870.1| ribosomal protein system 4 [Cryphaea glomerata] Length = 190 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I ++ + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIQNQRKSEAIISKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|48527415|gb|AAT45840.1| small ribosomal protein 4 [Plagiochila satoi] Length = 202 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCELGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIGNKKKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|37992479|gb|AAR06418.1| small ribosomal protein 4 [Cyathophorella tonkinensis] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K A + + + ++ Sbjct: 92 GMSPTIPGARQLVNHRHILVNDSIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|63191691|gb|AAY34807.1| small ribosomal protein subunit 4 [Pterogonium gracile] Length = 199 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|157689512|gb|ABV65312.1| ribosomal protein S4 [Leonia glycycarpa] Length = 144 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+ Sbjct: 1 YG-ITERQLLTYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHI 59 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFV 180 LVNGR V+I SYRCK D+I K K K A + L + ++P+++++N Sbjct: 60 LVNGRIVDIPSYRCKPRDIITAKDKKKSRAMIPNYLDSLPQEELPKHLTLNPFQCKGLVN 119 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 120 QIIDS-KWVDLKI--NELLVVEYYSR 142 >gi|32401868|gb|AAP80922.1| small ribosomal protein 4 [Amentotaxus formosana] Length = 182 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 13/161 (8%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQ+++ YG ++E++ + A R+ G T L+ LE RLD I++R TI Sbjct: 25 LKEKQRLRLNYG-LTERQLLQYVRIAXRANGSTGQVLLQLLEMRLDNIIFRLGMALTIPG 83 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYI 168 ARQ VNHRH+LVN R V+I SYRCK D+I +K + + + + L++RD VP Sbjct: 84 ARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSRNIINKNIDLSQRDKIWVP--- 140 Query: 169 SVNHDNMV---ATFVRIPSSLKDVP-YPVIMQPNLVVEFYS 205 NH N++ + ++ + + D + + LVVE+YS Sbjct: 141 --NHLNLLKKKSQYIGLVKKIIDSKRISLKINELLVVEYYS 179 >gi|47606930|gb|AAT36385.1| ribosomal protein subunit 4 [Pyrrhobryum medium] Length = 196 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDREK 138 >gi|67036086|gb|AAY62969.1| small ribosomal protein subunit 4 [Renauldia mexicana] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|242910210|ref|YP_002970646.1| ribosomal protein S4 [Alsophila spinulosa] gi|218454879|gb|ACK77216.1| ribosomal protein S4 [Alsophila spinulosa] Length = 207 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 13/212 (6%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ + K+ RR+ L G+ +P TR Q K S F ++L AKQ++ Sbjct: 1 MSRYRGPRLKVIRRLKNLPGLTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRL 56 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++E++ + A +++G T + LE RLD I++ + TI AARQ VNH Sbjct: 57 RFNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHSGMTSTIPAARQLVNH 115 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDN 174 RH+LVN R V++ SYRCK D+I V+ + + + R ++P+++ S+ N Sbjct: 116 RHILVNDRIVDVPSYRCKPKDIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGN 175 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V ++ + + + LVVE+YSR Sbjct: 176 RPKGLVNRIANRESIDLNI--NELLVVEYYSR 205 >gi|157689542|gb|ABV65327.1| ribosomal protein S4 [Polygala cruciata] Length = 179 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 15 RFRKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNIL 73 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEAS 157 +R TI ARQ VNHRH+LVNG V+I SYRCK D+I + QKS+ L + LE+S Sbjct: 74 FRLGMASTIPQARQLVNHRHILVNGHIVDIPSYRCKPQDIITARDNQKSRALIQNYLESS 133 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++++ +I S K V + LVVE+YSR Sbjct: 134 --PHEKLPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 177 >gi|49182663|gb|AAT57794.1| small ribosomal protein [Acromastigum exile] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 93 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNL 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 153 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 193 >gi|49182787|gb|AAT57855.1| small ribosomal protein [Radula complanata] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 24/206 (11%) Query: 10 KIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 KI RR+G N +PKS RS K S + ++L KQK++ +YG Sbjct: 3 KIIRRLGYLPGLSNKTLKPKSISIDRSMS--------NKKISQYRIRLEEKQKLRFHYG- 53 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++EK+ + A +G T LI LE RLD I++ PTI ARQ VNH+H ++N Sbjct: 54 LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKHFVIN 113 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 +VNI SY C+ GD+I V+ + K + + + L ++ ++P NH +T +R Sbjct: 114 NFTVNIPSYNCELGDIITVRNRHKSKSIITKNMNLFQKLEIP-----NHLTFDSTQLR-G 167 Query: 184 SSLKDVPYPVI---MQPNLVVEFYSR 206 S + + Y I + LVVE+YSR Sbjct: 168 SINQRIDYNSINFKINELLVVEYYSR 193 >gi|86438880|emb|CAJ55410.1| small ribosomal protein 4 [Plagiochila circinalis] Length = 202 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 AIRNKEKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|86438904|emb|CAJ55414.1| small ribosomal protein 4 [Plagiochila obovata] Length = 185 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 10 PGLTSKTLESKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 68 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ FLE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 69 GSTGQVLLQFLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 128 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 129 TIRDKQKSQSAI 140 >gi|37992537|gb|AAR06447.1| small ribosomal protein 4 [Hampeella alaris] Length = 199 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 4/135 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G NL G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 7 KIIRRLG-NLPGLTNKIPQLKS--NSINQSTSTKKISQYRIRLEEKQKLRFHYG-ITERQ 62 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN VN Sbjct: 63 LLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDCIVN 122 Query: 130 IGSYRCKEGDVIEVK 144 I SYRCK D I VK Sbjct: 123 IPSYRCKPQDFIIVK 137 >gi|67036008|gb|AAY62930.1| small ribosomal protein subunit 4 [Claopodium whippleanum] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|328488184|gb|AEB19905.1| small ribosomal protein 4 [Schistochila ciliata] Length = 191 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMTTTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 TIKNKKKSQSMITRNLNLLQKLKIPNHLTFDSTQLRGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|328541074|gb|AEB21761.1| ribosomal protein S4 [Hyalolepidozia microphylla] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PK N RS K S + ++L KQK++ +YG ++E++ + A R++ Sbjct: 20 KPKPSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQSLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQSLEMRLDNTIFRLGMASTIPGARQLVNHRHIAINNNIVDIPSYNCQPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P Y++ + + + I ++ + + LV Sbjct: 131 TIRDKQKSQSIITKNVNLFQNLKIPSYLTFDSTKLCGS---INQTINREWIDIKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|290467485|gb|ADD25860.1| small ribosomal protein 4 [Hymenophyllum rugosum] Length = 186 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 22 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFQS 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+ VN V+I SYRCK D+I V+ + + E + R Sbjct: 81 GMSATIPAARQLVNHRHIWVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSKENIGFSRRK 140 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 141 KIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 184 >gi|227439295|gb|ACP31324.1| ribosomal protein small subunit 4 [Pteridium caudatum] gi|227439401|gb|ACP31377.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pseudocaudatum] Length = 189 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 81 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 140 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 141 LGEK-IPDHLTLSLSEGSRPTGLVNRIASRESVNLNI--NELLVVEYYSR 187 >gi|37992459|gb|AAR06408.1| small ribosomal protein 4 [Chaetomitrium dusenii] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNRQKSETIIS 142 >gi|46486574|gb|AAS98723.1| ribosomal protein subunit 4 [Touwiodendron diversifolium] Length = 199 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAII 146 >gi|3098174|gb|AAC15535.1| small ribosomal protein 4 [Leptostomum macrocarpum] Length = 199 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLXEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKFQAIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 157 KTPNHLTYNXLKKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|86438888|emb|CAJ55420.1| small ribosomal protein 4 [Plagiochila elegans] Length = 187 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 PGLTGKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 68 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 127 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 128 TIGNKQKSQSIVT 140 >gi|311901194|gb|ADQ13147.1| small ribosomal protein 4 [Nephrolepis falciformis] Length = 178 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +V+ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNVVFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S ++ Sbjct: 75 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSYNALRTKSPRKDK- 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|74273109|gb|ABA01254.1| ribosomal protein S4 [Passiflora pittieri] Length = 183 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 10/129 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++L+ KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIARSAFS-------RPGRKSQYCIRLQEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQL 150 K QKSK + Sbjct: 121 KDEQKSKDM 129 >gi|121761792|gb|ABM64982.1| ribosomal protein S4 [Orthomnion elimbatum] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRNSIDLKINELLVVEYYSR 193 >gi|63191681|gb|AAY34802.1| small ribosomal protein subunit 4 [Lepyrodontopsis trichophylla] Length = 198 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 96 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 146 >gi|328541162|gb|AEB21805.1| ribosomal protein S4 [Lepidozia trichodes] Length = 200 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSTKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|42794712|gb|AAS45751.1| Rps4 [Thibaudia densiflora] Length = 211 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 11/159 (6%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+ + ++E++ + A +++G T L+ LE RLD I++R TI ARQ Sbjct: 53 KQKLG-FXXGLTERQLLKSXRXAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQ 111 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEY 167 VNHRHVLVNGR ++I SYRCK D+I ++KSK L L + + + VP + Sbjct: 112 LVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSKALIQNSFQNLFDLPSRKRKRKRVPYH 171 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++N +I ++ K V + + LVVE+YSR Sbjct: 172 LTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|51458089|gb|AAU03397.1| ribosomal protein small subunit 4 [Asplenium bullatum] Length = 188 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE R D +++R Sbjct: 26 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRXDNVLFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D I V+ + + L A L Sbjct: 85 GMASTISAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTS-CNALRAKSLVGDR 143 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 144 TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 186 >gi|328541108|gb|AEB21778.1| ribosomal protein S4 [Bazzania yoshinagana] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 93 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNL 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 153 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 193 >gi|118724471|gb|ABL10809.1| ribosomal protein small subunit 4 [Cheilanthes fendleri] Length = 193 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 26 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ + ++ Sbjct: 85 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSY-NAMKGES 143 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 144 FGRDEVPDHLTL 155 >gi|18920777|gb|AAL82433.1| ribosomal protein system 4 [Plagiothecium piliferum] Length = 191 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 148 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|18920765|gb|AAL82427.1| ribosomal protein system 4 [Plagiothecium conostegium] Length = 193 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 150 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 151 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 191 >gi|67035881|gb|AAY62867.1| small ribosomal protein subunit 4 [Clastobryum tenuirameum] Length = 200 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 157 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V V R LK + LVVE+YSR Sbjct: 158 KIPNHLIYSSLEKKGLVNQIVDRESIGLK-------INELLVVEYYSR 198 >gi|311223000|gb|ADP76582.1| small ribosomal protein 4 [Noteroclada confluens] gi|311223004|gb|ADP76584.1| small ribosomal protein 4 [Noteroclada confluens] gi|311223006|gb|ADP76585.1| small ribosomal protein 4 [Noteroclada confluens] Length = 171 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 4/163 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 13 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+L+N V+I SY C+ GDVI VK + + + + + + Sbjct: 72 GMSSTIPGARQLVNHRHILINDNMVDIPSYNCEPGDVITVKNRRESQSIIAKNMEFQRPK 131 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N + ++ + + + LVVE+YSR Sbjct: 132 IPNHLTLNSIQFQGSVNQV---INRECIDLKINELLVVEYYSR 171 >gi|49182811|gb|AAT57867.1| small ribosomal protein [Tetralophozia setiformis] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY K GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDTVDIPSYSRKSGDII 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TIRNKQKSQSIITKNINLFQKSKIPSHLTFDLTQLRGS---VNQTVNREWVNLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|63101071|gb|AAY33160.1| small ribosomal protein 4 [Chaetomitriopsis glaucocarpa] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNRQKSETIIS 143 >gi|37992717|gb|AAR06537.1| small ribosomal protein 4 [Trachypus bicolor] Length = 192 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + L+L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRLRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 149 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 150 KIPNHLTYSSLEKKGLVTQILDRESVGLK-------INELLVVEYYSR 190 >gi|37992581|gb|AAR06469.1| small ribosomal protein 4 [Leskeodon auratus] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|37992421|gb|AAR06389.1| small ribosomal protein 4 [Aerolindigia capillacea] Length = 190 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K K K + + +L ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNKRKSENIISKNMELYQKY 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYSFLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|63101093|gb|AAY33171.1| small ribosomal protein 4 [Desmotheca apiculata] Length = 197 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN R V+I SYRCK D I +K K Sbjct: 95 GMAPTIPGARQLINHRHILVNDRIVDIPSYRCKPLDFITIKDGRK 139 >gi|212004235|gb|ACJ15426.1| Rps4 [Cheilanthes bonariensis] Length = 179 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 80/133 (60%), Gaps = 2/133 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 12 QSXSKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 70 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V + Sbjct: 71 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAV-KGKS 129 Query: 159 LAERDVPEYISVN 171 ++P++++++ Sbjct: 130 FGRDEIPDHLTLS 142 >gi|118724369|gb|ABL10758.1| ribosomal protein small subunit 4 [Pellaea notabilis] Length = 190 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 23 QSXSKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + + L+ Sbjct: 82 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSY-NALKVES 140 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 141 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 188 >gi|67035841|gb|AAY62847.1| small ribosomal protein subunit 4 [Chionostomum rostratum] Length = 192 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + + + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRQSETIINKNIEFYQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTYNSLENKGLINQI---LDRESIDLKINELLVVEYYSR 190 >gi|118625987|emb|CAL39315.1| small ribosomal protein 4 [Metzgeria decipiens] Length = 202 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 34/220 (15%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + K+K SY + Sbjct: 1 MSRYRGPRTKIIRRLGA---------------LPGLTSKTFKAKSSYIDRPASNKKISQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R VPT Sbjct: 46 RVRLEEKQKLRFHYG-LTERQLLKYVRIARRTKGSTGLLLLQLLEMRLDNIIFRLGMVPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEY 167 I AARQ VNH H+ +N V+I SY C+ GD+I +K + + + ++E + L + +P + Sbjct: 105 IPAARQLVNHGHISINKDIVDIPSYNCELGDIITIKNQERYRSIIMERLNSLQKPGIPNH 164 Query: 168 ISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNLVVEFYSR 206 + + ++ + R I D+ + LVVE+YSR Sbjct: 165 LVFDSTKLIGSVNRMINREWIDLK----INELLVVEYYSR 200 >gi|48527413|gb|AAT45839.1| small ribosomal protein 4 [Plagiochila rutilans] Length = 202 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLNINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|58293899|gb|AAW69896.1| small ribosomal protein 4 [Desmotheca apiculata] Length = 189 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN R V+I SYRCK D I +K K Sbjct: 87 GMAPTIPGARQLINHRHILVNDRIVDIPSYRCKPLDFITIKDGRK 131 >gi|63100995|gb|AAY33122.1| small ribosomal protein 4 [Pireella angustifolia] Length = 198 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|37992579|gb|AAR06468.1| small ribosomal protein 4 [Lepyrodontopsis trichophylla] Length = 187 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 85 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 135 >gi|67036026|gb|AAY62939.1| small ribosomal protein subunit 4 [Aerolindigia capillacea] Length = 197 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K K K + + +L ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNKRKSENIISKNMELYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 155 KIPNHLTYSFLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|311901200|gb|ADQ13150.1| small ribosomal protein 4 [Nephrolepis pectinata] Length = 177 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 10 QSASRKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDN 68 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK GD+I V+ + ++ Sbjct: 69 VIFHLGMTSTIPAARQLVNHRHILVNNCIVDIPSYRCKPGDIITVRNRPTSYNALRAEFS 128 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 129 VGDK-TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 175 >gi|290467465|gb|ADD25850.1| small ribosomal protein 4 [Hymenophyllum acanthoides] Length = 185 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 8/166 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 82 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSGSK--ENIGFSRRK 139 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + + LVVE+YSR Sbjct: 140 KIPDHLTFSFSEDNIPKGLVNGIANRESIDFNI--NELLVVEYYSR 183 >gi|118724317|gb|ABL10732.1| ribosomal protein small subunit 4 [Pellaea atropurpurea] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + + L+ Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRCKPKDIITIRNRPTSY-NALKVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|51458125|gb|AAU03412.1| ribosomal protein small subunit 4 [Diellia erecta] gi|51458127|gb|AAU03413.1| ribosomal protein small subunit 4 [Diellia falcata] gi|51458130|gb|AAU03414.1| ribosomal protein small subunit 4 [Diellia pallida] gi|51458132|gb|AAU03415.1| ribosomal protein small subunit 4 [Diellia unisora] gi|51458134|gb|AAU03416.1| ribosomal protein small subunit 4 [Diellia x lauii] Length = 185 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 93/172 (54%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S + ++ Sbjct: 82 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPTDFITVRNRPTSCNAMKNKSLVGDK- 140 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 TPDHLTVSLSGGDRPTGLVNGVANRESINLNINEL---------LVVEYYSR 183 >gi|16565363|gb|AAL26200.1|AF313593_1 small ribosomal protein 4 [Tmesipteris obliqua] Length = 234 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ A ++RG T L+ LE RLD I++R Sbjct: 79 KRSQYSIRLEAKQRLRFNYG-LTERQLLKYVYIAKKARGSTGQVLLQLLEMRLDNIIFRL 137 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN V+I SYRCK D+I V+ Sbjct: 138 GMSPTIPGARQLVNHRHILVNDHIVDIPSYRCKPNDIITVR 178 >gi|63101081|gb|AAY33165.1| small ribosomal protein 4 [Hookeriopsis cuspidata] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNYSIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKI 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 193 >gi|311901202|gb|ADQ13151.1| small ribosomal protein 4 [Nephrolepis pendula] Length = 178 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 11 QSASRKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDN 69 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK GD+I V+ + ++ Sbjct: 70 VIFHLGMTSTIPAARQLVNHRHILVNNCIVDIPSYRCKPGDIITVRNRPTSYNALRAEFS 129 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 130 VGDK-TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|157785980|gb|ABV74164.1| small ribosomal protein 4 [Dendrohypopterygium filiculiforme] Length = 196 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + + ++ Sbjct: 94 GMTPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKSESIINKNIEFYQKY 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 154 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKVNELLVVEYYSR 194 >gi|42405300|gb|AAS13476.1| rps4 small ribosomal protein [Arbusculohypopterygium arbusculum] Length = 194 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYVVDIPSYRCKPQDFITIKNQQKSETIIS 142 >gi|67036002|gb|AAY62927.1| small ribosomal protein subunit 4 [Diaphanodon blandus] Length = 195 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNRRKSETIISKNIEFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 193 >gi|12545452|ref|NP_075002.1| ribosomal protein S4 [Euglena longa] gi|14285747|sp|P58134|RR4_ASTLO RecName: Full=Plastid 30S ribosomal protein S4 gi|12329916|emb|CAC24613.1| ribosomal protein S4 [Euglena longa] Length = 206 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQK++ + ISEK+ + K+A + +G + NL+ LE RLD IVYR Sbjct: 44 KTSKYKIRLKEKQKLRFNFA-ISEKQLFNYVKKAIKLKGSSGENLLVALEMRLDNIVYRL 102 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ++RQ +NH H+ V+G+ VNI S++CK + I++K L + ++ E++ Sbjct: 103 GLAPTIISSRQLINHGHIYVDGKVVNIPSFKCKPTNNIKIKDN-------LVSKRIIEKN 155 Query: 164 V---------PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P ++ N + A ++ + +K +I+ L++EFYSR Sbjct: 156 IELLDKYFRAPSHLYFNKKKLEA---KVINMVKREDIKLIINELLIIEFYSR 204 >gi|14017574|ref|NP_114261.1| ribosomal protein S4 [Triticum aestivum] gi|26399159|sp|Q95H61|RR4_WHEAT RecName: Full=30S ribosomal protein S4, chloroplastic gi|13928207|dbj|BAB47036.1| ribosomal protein S4 [Triticum aestivum] Length = 201 Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 15/210 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGK-LPKHLAID----TLE 170 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 171 YKGLVNKILDRKW-VGLKINELLVVEYYSR 199 >gi|67036074|gb|AAY62963.1| small ribosomal protein subunit 4 [Ptychodium plicatum] Length = 194 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLETRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|320455044|dbj|BAJ65669.1| small ribosomal protein 4 [Metzgeria lindbergii] Length = 187 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 92/162 (56%), Gaps = 14/162 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 +K + + + ++E + L + +P ++ + N++ + R+ Sbjct: 131 TIKNQERYRSIIMERLNSLQKPGIPNHLVFDSTNLIGSVNRM 172 >gi|37992643|gb|AAR06500.1| small ribosomal protein 4 [Philophyllum tenuifolium] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + + + + + + ++ Sbjct: 97 GMTPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRQSESIISKNIEFYQKI 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGLINQI---LDRDSIGLKINELLVVEYYSR 197 >gi|18028064|gb|AAL55956.1| ribosomal protein S4 [Jamesonia imbricata] Length = 157 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 6/159 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L KQ++ YG ++E++ + A ++RG T L+ LE RLD I++R TI Sbjct: 1 VRLETKQRLLFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNILFRLGMASTI 59 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY-- 167 AARQ VNHRH+LVN R V+I SYRC D+I ++ + ++ + + +P++ Sbjct: 60 PAARQLVNHRHILVNKRIVDIPSYRCNPKDIITIRNQPIS-HNMTKGESIGRDGIPDHLT 118 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S++ D A V +S + V + LVVEFYSR Sbjct: 119 LSLSKDGEPAGLVNRMASRESVDLEI--NELLVVEFYSR 155 >gi|59803307|gb|AAX07762.1| Rps4 [Noteroclada confluens] Length = 192 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 4/163 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 32 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+L+N V+I SY C+ GDVI VK + + + + + + Sbjct: 91 GMSSTIPGARQLVNHRHILINDNMVDIPSYNCEPGDVITVKNRRESQSIIAKNMEFQRPK 150 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N + ++ + + + LVVE+YSR Sbjct: 151 IPNHLTLNSIQFQGSVNQV---INRECIDLKINELLVVEYYSR 190 >gi|67036098|gb|AAY62975.1| small ribosomal protein subunit 4 [Helodium blandowii] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|108861090|gb|ABG21417.1| ribosomal protein small subunit 4 [Marsilea minuta] Length = 185 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 7/136 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 15 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D I V+ + V Sbjct: 74 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDNITVRNRPTSYNVLKGGVF 133 Query: 155 EASQLAERDVPEYISV 170 E+S+ E +P+++S+ Sbjct: 134 ESSRSNE--IPDHLSL 147 >gi|37992645|gb|AAR06501.1| small ribosomal protein 4 [Pilotrichum andersonii] Length = 194 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTILGARQLVNHKHIVVNDYIVDIPSYRCKPQDFITIKNQRKSQAIISKNIEFYQKF 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ ++ + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLINQILDRESIGLK-------INELLVVEYYSR 192 >gi|63101083|gb|AAY33166.1| small ribosomal protein 4 [Amblytropis hispidula] Length = 193 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIAKKAKGSTGEVLLQLLEMRLDNXIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKI 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTYNFIEKKGLINQI---LDRESIGLKINELLVVEYYSR 191 >gi|222103490|gb|ACM44274.1| small ribosomal protein subunit 4 [Aulacomnium turgidum] Length = 200 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + L ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKY 157 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 158 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 198 >gi|219973372|gb|ACL68572.1| ribosomal protein small subunit 4 [Marsilea minuta] Length = 184 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 7/136 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 14 QSTSKKISQYCVRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDN 72 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVL 154 IV++ PTI AARQ VNHRH+LVN R V++ SYRC+ D I V+ + V Sbjct: 73 IVFQLGLAPTIPAARQLVNHRHILVNDRIVDVPSYRCEPQDNITVRNRPTSYNVLKGGVF 132 Query: 155 EASQLAERDVPEYISV 170 E+S+ E +P+++S+ Sbjct: 133 ESSRSNE--IPDHLSL 146 >gi|184128079|gb|ACC67939.1| ribosomal protein small subunit 4 [Tmesipteris obliqua] Length = 172 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 1/106 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG ++E++ A ++RG T L+ LE RLD Sbjct: 12 QSTSRKRSQYSIRLEAKQRLRFNYG-LTERQLLKYVYIAKKARGSTGQVLLQLLEMRLDN 70 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 I++R PTI ARQ VNHRH+LVN V+I SYRCK D+I V+ Sbjct: 71 IIFRLGMSPTIPGARQLVNHRHILVNDHIVDIPSYRCKPNDIITVR 116 >gi|49182698|gb|AAT57811.1| small ribosomal protein [Dendrohypopterygium arbuscula] Length = 195 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 93 GMAPTIPGARQLVNHRHILVNDYVVDIPSYRCKPQDFITIKNQQKSETIIS 143 >gi|63100985|gb|AAY33117.1| small ribosomal protein 4 [Foreauella orthothecia] Length = 192 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 90 SMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQQK 134 >gi|47606904|gb|AAT36372.1| ribosomal protein subunit 4 [Hymenodon pilifer] gi|67035765|gb|AAY62813.1| small ribosomal protein subunit 4 [Hymenodon pilifer] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFYYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K V + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNRRKSQTIVNKNIDFYQKY 156 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQILDRESISLK-------INELLVVEYYSR 197 >gi|37992539|gb|AAR06448.1| small ribosomal protein 4 [Hampeella pallens] Length = 194 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G NL G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLG-NLPGLTNKIPQLKS--NSINQSTSTKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHR +LVN VN Sbjct: 58 LLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLNMAPTIPGARQLVNHRQILVNNCIVN 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMVATFV-RIPS 184 I SYRCK D I VK + + +++D +P Y S+ +V + R Sbjct: 118 IPSYRCKPQDFIIVKNLKNSEVKMNKNKDFSQKDKIPNHLIYSSLEKKGLVNKILDRESI 177 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 LK + LVVE+YSR Sbjct: 178 GLK-------INELLVVEYYSR 192 >gi|67035869|gb|AAY62861.1| small ribosomal protein subunit 4 [Mastopoma subfiliferum] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPEARQLVNHRHILVNDCIVNIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 197 >gi|227439317|gb|ACP31335.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. pinetorum] Length = 186 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L LE RLD Sbjct: 19 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 78 VIFXLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 138 LGEK-IPDHLTLSLSEGSRPTGLVNRIASRESVNLNI--NELLVVEYYSR 184 >gi|190361249|gb|ACE76929.1| ribosomal protein small subunit 4 [Didymoglossum hildebrandtii] Length = 152 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S FG++L KQ+++ YG ++E++ + A R++G T L+ LE RLD IV++ Sbjct: 2 SQFGVRLETKQRLRFNYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIVFQLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI AARQ VNHRH+LV VNI SYRCK D+I + + Sbjct: 61 APTIPAARQLVNHRHILVKNCIVNIPSYRCKPKDIITLSSR 101 >gi|37992541|gb|AAR06449.1| small ribosomal protein 4 [Hemiragis aurea] Length = 194 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQLKSEAIISKNIEFYQKM 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 192 >gi|37722549|gb|AAN75496.1| ribosomal protein S4 [Anogramma chaerophylla] gi|38112448|gb|AAR11304.1| ribosomal protein S4 [Anogramma chaerophylla] Length = 191 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 17/188 (9%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L AKQ+++ YG ++E++ + A Sbjct: 4 PGLAGKNKMSNSEEFRVASDPSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T + LE RLD I++R TI AARQ VNHRH+LVN R V+I SYRCK Sbjct: 63 KTRGSTGQVPLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNRRIVDIPSYRCKPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 D+I ++ + +V + + +P++++++ + I + + Sbjct: 123 DLITIRNRPTS-HNVAKGESIGRNGMPDHLTLSLSKAGESAGLINHMANRESVDLDINEL 181 Query: 199 LVVEFYSR 206 VVE+YSR Sbjct: 182 FVVEYYSR 189 >gi|3098212|gb|AAC15554.1| small ribosomal protein 4 [Aulacomnium turgidum] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|67036060|gb|AAY62956.1| small ribosomal protein subunit 4 [Struckia argentata] Length = 198 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + + A + + + ++ Sbjct: 96 GMTPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFISMKNQRESEAIINKNIEFYQKY 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|270300673|gb|ACZ69415.1| ribosomal protein S4 [Radula aquilegia] Length = 202 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS R+ K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSISIDRAMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH+H ++N +VNI SY C+ GD+I ++ + K + + L ++ ++P +++ + Sbjct: 112 VNHKHFVINNFTVNIPSYNCELGDIITIRNRPKSKSIITRNMNLFQKLEIPNHLTFDSTQ 171 Query: 175 MVATF-VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + RI + + + + LVVE+YSR Sbjct: 172 LRGSINQRIDCN--SINFKI--NELLVVEYYSR 200 >gi|294337263|emb|CAQ52780.1| ribosomal protein S4 [Pseudoscleropodium purum] Length = 202 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTSKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|117306756|emb|CAH73347.1| ribosomal protein S4 [Sematophyllum sp. Sg129] gi|117306758|emb|CAH73348.1| ribosomal protein S4 [Sematophyllum sp. Sg129] Length = 183 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 81 GMAPTIPGARQLVNHRHILVNDSMVDIPSYRCKPQDFITIKNQRK 125 >gi|29422385|gb|AAO84588.1| small ribosomal protein 4 [Aulacomnium palustre] Length = 190 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + L ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKY 147 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 188 >gi|47606928|gb|AAT36384.1| ribosomal protein subunit 4 [Pyrrhobryum latifolium] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDREKYQTIISKNIDFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGVVNQI---LDRESISLKINELLVVEYYSR 197 >gi|7576581|gb|AAF63903.1| ribosomal protein system 4 [Haplocladium virginianum] Length = 189 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + +++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFSQKS 147 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 188 >gi|67035779|gb|AAY62820.1| small ribosomal protein subunit 4 [Calliergonella cuspidata] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKSK + + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSKTIIN 147 >gi|26399099|sp|P59139|RR4_HOOLU RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504369|emb|CAC80629.1| small ribosomal protein 4 [Hookeria lucens] Length = 202 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 PTI ARQ VNHRH+ VN VNI SYRCK D I +K + K A + +E Q Sbjct: 100 GMAPTIPGARQLVNHRHIGVNDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKF 159 Query: 161 ER-DVPEYISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R + Y S+ +V + R + LK + LVVE+YSR Sbjct: 160 KRPNHLTYSSLEKKGLVNRILDRESTGLK-------INELLVVEYYSR 200 >gi|294337226|emb|CAQ52762.1| ribosomal protein S4 [Papillaria crocea] Length = 202 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 TQILDRESIGLK-------INELLVVEYYSR 200 >gi|212004155|gb|ACJ15386.1| Rps4 [Pellaea atropurpurea] Length = 187 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + + L+ Sbjct: 79 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRCKPKDIITIRNRPTSY-NALKVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|12330502|gb|AAG52788.1| ribosomal protein 4 [Macromitrium richardii] Length = 189 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L K+K++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKRKLRFHYG-ITERQLLNCVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K QKS+ + + Sbjct: 87 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPLDFITIKDGQKSQDIIN 137 >gi|3098246|gb|AAC15571.1| small ribosomal protein 4 [Rhizogonium lindigii] Length = 184 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++ Sbjct: 82 GMAPTISGARQLVNHRHILVNDHIVDIPSYRCKPQDFIIIKDQQKYQTIISKNINFYQKY 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 182 >gi|63101075|gb|AAY33162.1| small ribosomal protein 4 [Rutenbergia madagassa] Length = 194 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKYEAIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQI---LDSESIGLKINELLVVEYYSR 192 >gi|118625937|emb|CAL39290.1| small ribosomal protein 4 [Schistochilopsis incisa] Length = 202 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAVTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P ++ + + + + ++ + + LV Sbjct: 138 TIRNKQKSQSVITKNLNLFQKLKIPSHLIFDFTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|49182710|gb|AAT57817.1| small ribosomal protein [Gymnomitrion concinnatum] Length = 195 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTFKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 71 GSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TVKSKQKSQSIITKNVNLFQKLKIPGHLTFDSIELRGS---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|32892128|gb|AAP89003.1| ribosomal protein S4 [Passiflora rufa] Length = 183 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RSGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGPVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|86211247|gb|ABC87296.1| small ribosomal protein 4 [Hymenophyllum acanthoides] Length = 180 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 18 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + S + Sbjct: 77 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSS-GSKENIGFSRRKK 135 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + + LVVE+YSR Sbjct: 136 IPDHLTFSFSEDNIPKGLVNGIANRESIDFNI--NELLVVEYYSR 178 >gi|51458085|gb|AAU03395.1| ribosomal protein small subunit 4 [Asplenium ruta-muraria subsp. ruta-muraria] Length = 189 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ ++ + L+ Sbjct: 81 VIFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRTTS-CNALKNKS 139 Query: 159 LAERDVPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++V+ D + R+ + + + LVVE+YSR Sbjct: 140 LVGDKTPDHLTVSLSEGDRLTGLVNRVANR---ESINLNINELLVVEYYSR 187 >gi|67036028|gb|AAY62940.1| small ribosomal protein subunit 4 [Lindigia aciculata] Length = 194 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K K K + + +L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNKRKSENIISKNMELYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYSFLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|67036094|gb|AAY62973.1| small ribosomal protein subunit 4 [Platylomella lescurii] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|294337068|emb|CAQ52684.1| ribosomal protein S4 [Andoa berthelotiana] Length = 202 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNNCIVDIPSYRCKPQDFITIKNQRK 144 >gi|117306740|emb|CAH73338.1| ribosomal protein S4 [Hampeella alaris] Length = 183 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I VK Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVK 121 >gi|67036100|gb|AAY62976.1| small ribosomal protein subunit 4 [Rauiella lagoensis] Length = 199 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGDILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDYITIKNQQKSETIINKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|194033151|ref|YP_002000489.1| ribosomal protein S4 [Brachypodium distachyon] gi|193075559|gb|ACF08642.1| ribosomal protein S4 [Brachypodium distachyon] Length = 201 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 +LVNGR VNI S+RCK D+I K Q + L + +A D +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITT--KDNQRSQSLVQNSIASSDPGKLPKHLTID----TL 169 Query: 178 TFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 170 EYKGLVNKILDRKW-VGLKINELLVVEYYSR 199 >gi|311901186|gb|ADQ13143.1| small ribosomal protein 4 [Nephrolepis davalliae] Length = 172 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 10 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVLLQLLEMRLDNVIFHL 68 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 69 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKFPGKDK 127 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 128 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 170 >gi|222103474|gb|ACM44266.1| small ribosomal protein subunit 4 [Rhytidium rugosum] gi|222103550|gb|ACM44304.1| small ribosomal protein subunit 4 [Rhytidium rugosum] Length = 202 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 144 >gi|48527409|gb|AAT45837.1| small ribosomal protein 4 [Plagiochila retrorsa] Length = 202 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|212004157|gb|ACJ15387.1| Rps4 [Pellaea atropurpurea] Length = 182 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 15 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + + L+ Sbjct: 74 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRCKPKDIITIRNRPTSY-NALKVES 132 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 133 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 180 >gi|38000439|gb|AAR06424.1| small ribosomal protein 4 [Diaphanodon procumbens] Length = 196 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNRRK 138 >gi|51458176|gb|AAU03436.1| ribosomal protein small subunit 4 [Asplenium prolongatum] Length = 193 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 26 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 85 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSFNALRNKSL 144 Query: 159 LAERDVPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++ ++ + V ++ + + + LVVE+YSR Sbjct: 145 VGDK-TPDHLTFALSEGDRPTGLVNCIANRESINLNI--NELLVVEYYSR 191 >gi|47606890|gb|AAT36365.1| ribosomal protein subunit 4 [Cryptopodium bartramioides] Length = 174 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ + G I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 13 KISQYRIRLEEKQKLRXHXG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+ SYRCK D I +K + K + + ++ Sbjct: 72 GMTPTIPGARQLVNHRHILVNDRIVDXPSYRCKPQDFITIKDREKYQTIISKNIDFXQKY 131 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 132 KIPNHLTYNXLEKKGVVNQI---LDRESXXLKINELLVVEYYSR 172 >gi|46486538|gb|AAS98705.1| ribosomal protein subunit 4 [Mesochaete taxiforme] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN + V+I SY+CK D I +K + K A + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDQIVDIPSYQCKPQDFITIKDRQKSQAII 141 >gi|52788787|gb|AAU87374.1| ribosomal protein small subunit 4 [Azolla filiculoides] gi|157272421|gb|ABV27025.1| ribosomal protein small subunit 4-like protein [Azolla filiculoides] Length = 203 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 12/170 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T + LE RLD I++ Sbjct: 37 KISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL-----ASVLEASQ 158 PTI AARQ VNHRH+LVN R V++ SYRCK D+I ++ + L + E+S+ Sbjct: 96 GIAPTIPAARQPVNHRHILVNDRIVDVPSYRCKPKDIITIRNRPTSLNGLKRTGIFESSR 155 Query: 159 LAERDVPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++++ + DN V ++ + + + VVE+YSR Sbjct: 156 --GNQIPDHLTLSFSEDNRPKGLVNKTATRESIDLNI--NELSVVEYYSR 201 >gi|270300671|gb|ACZ69414.1| ribosomal protein S4 [Radula jonesii] Length = 202 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSISIDRSMS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A +G T LI LE RLD I++ P+I ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPSIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH+H ++N +VNI SY C+ GD+I ++ + K + + L ++ ++P +++ + Sbjct: 112 VNHKHFVINNFTVNIPSYNCELGDIITIRNRQKSKSIITRNMNLFQKLEIPNHLTFDSTQ 171 Query: 175 MVATF-VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + RI + + + + LVVE+YSR Sbjct: 172 LRGSINQRIDCN--SINFKI--NELLVVEYYSR 200 >gi|157154425|gb|ABV24919.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154429|gb|ABV24921.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154431|gb|ABV24922.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154433|gb|ABV24923.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154435|gb|ABV24924.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154439|gb|ABV24926.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154441|gb|ABV24927.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154443|gb|ABV24928.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154447|gb|ABV24930.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154449|gb|ABV24931.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154451|gb|ABV24932.1| ribosomal protein small subunit 4 [Asplenium viride] gi|157154453|gb|ABV24933.1| ribosomal protein small subunit 4 [Asplenium adulterinum] Length = 178 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 12/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 75 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNAMRNKSLVGDK- 133 Query: 164 VPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 P++++V+ D R+ + +++ N LVVE+YSR Sbjct: 134 TPDHLTVSLSEGDRATGLVNRVANR-----ESIVLNINELLVVEYYSR 176 >gi|47606914|gb|AAT36377.1| ribosomal protein subunit 4 [Mesochaete undulata] Length = 195 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN + V+I SY+CK D I +K + K A + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDQIVDIPSYQCKPQDFITIKDRQKSQAII 142 >gi|67035805|gb|AAY62833.1| small ribosomal protein subunit 4 [Bryocrumia andersonii] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSETIIS 147 >gi|63191761|gb|AAY34840.1| small ribosomal protein subunit 4 [Cyrtopus setosus] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAII 141 >gi|67036000|gb|AAY62926.1| small ribosomal protein subunit 4 [Trachypus bicolor] Length = 195 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 152 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYGSLEKKGLVTQILDRESVGLK-------INELLVVEYYSR 193 >gi|66866203|gb|AAY57775.1| small ribosomal protein 4 [Aulacomnium androgynum] Length = 206 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEENQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 99 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSEAII 148 >gi|63191739|gb|AAY34829.1| small ribosomal protein subunit 4 [Mesochaete undulata] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN + V+I SY+CK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDQIVDIPSYQCKPQDFITIKDRQKSQAII 146 >gi|118724505|gb|ABL10826.1| ribosomal protein small subunit 4 [Notholaena candida] Length = 186 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T L+ LE RLD Sbjct: 19 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVLLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 78 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KGKS 136 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 137 LGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 184 >gi|15145860|gb|AAK83548.1| rps4 [Tayloria octoblepharum] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQTSQAIINKNIEFHQKH 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 147 KIPTHLIYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|328541132|gb|AEB21790.1| ribosomal protein S4 [Telaranea heterotexta] Length = 200 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 75 GSTGQVLLQLLEMRLDNTLFRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCELGDVI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIKDKQKSRSIITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|157154445|gb|ABV24929.1| ribosomal protein small subunit 4 [Asplenium viride] Length = 172 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 12/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 10 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 68 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 69 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNAMRNKSLVGDK- 127 Query: 164 VPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 P++++V+ D R+ + +++ N LVVE+YSR Sbjct: 128 TPDHLTVSLSEGDRATGLVNRVANR-----ESIVLNINELLVVEYYSR 170 >gi|124021098|gb|ABM88822.1| small ribosomal protein subunit 4 [Aneura maxima] Length = 192 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 31 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + + L + Sbjct: 90 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVNWRDMNSLQKP 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 150 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 190 >gi|42556426|gb|AAS19808.1| small ribosomal protein 4 [Hygrolembidium acrocladum] Length = 191 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A R++ Sbjct: 16 KPKSGYNDRSTP--------NKKVSQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY CK GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTILRFGMASTIPGARQLVNHRHIPINNDIVDIPSYNCKPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 127 TIKNKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWVNIKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67036102|gb|AAY62977.1| small ribosomal protein subunit 4 [Thuidiopsis furfurosa] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|118626073|emb|CAL39340.1| small ribosomal protein 4 [Gymnomitrion corallioides] Length = 202 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTFKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 78 GSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVKSKQKSQSIITKNVNLFQKLKIPGHLTFDSIELRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|46811048|gb|AAT01842.1| small ribosomal protein 4 [Riccia huebeneriana subsp. sullivantii] Length = 179 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 18 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAE 161 PTI ARQ VNH+H+L+N +V+I SY CK D+I +K QKSK + + + + Sbjct: 77 GMAPTIPGARQLVNHQHILINNHTVDIPSYNCKPKDIITIKDRQKSKSIITK-NLNFFQK 135 Query: 162 RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ + + +I ++ Y I + LVVE+YSR Sbjct: 136 QKIPNHLNFDLIQIKGLINQIVD--REWIYLKINEL-LVVEYYSR 177 >gi|37992503|gb|AAR06430.1| small ribosomal protein 4 [Duthiella declinata] Length = 191 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYSFLEKKGLVTQI---LDRESIGLKINELLVVEYYSR 189 >gi|37992493|gb|AAR06425.1| small ribosomal protein 4 [Dimorphocladon borneense] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNRRK 136 >gi|46486572|gb|AAS98722.1| ribosomal protein subunit 4 [Cyrtopus setosus] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAII 146 >gi|7576539|gb|AAF63882.1| ribosomal protein system 4 [Neorutenbergia usagarae] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRKYEAIISKNIEFYQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + L+VE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQI---LDSESIGLKINELLIVEYYSR 188 >gi|118724367|gb|ABL10757.1| ribosomal protein small subunit 4 [Pellaea notabilis] Length = 195 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + + L+ Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSY-NALKVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|78102639|gb|ABB21533.1| small ribosomal protein 4 [Plagiochila cymbiformis] gi|78102645|gb|ABB21536.1| small ribosomal protein 4 [Plagiochila duricaulis] gi|78102683|gb|ABB21555.1| small ribosomal protein 4 [Plagiochila latifrons] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 131 TIRNKQKSQSAI 142 >gi|78102665|gb|ABB21546.1| small ribosomal protein 4 [Plagiochila gigantea] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 131 TIRNKQKSQSAI 142 >gi|77862541|gb|ABB04543.1| small ribosomal protein 4 [Monoclea gottschei] Length = 201 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSISNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRHILINNNPVDIPSYNCKPKDII 136 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K +L + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLIQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|42556418|gb|AAS19804.1| small ribosomal protein 4 [Gymnomitrion sp. 1989 Parnela] Length = 191 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTFKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 67 GSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TVKSKQKSQSIITKNVNLFQKLKIPGHLTFDSIELRGS---VNQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|37992597|gb|AAR06477.1| small ribosomal protein 4 [Meteoriella soluta] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 87 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 137 >gi|51458087|gb|AAU03396.1| ribosomal protein small subunit 4 [Asplenium hispanicum] Length = 186 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 24 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVIFHL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D I V+ +S + L+ L Sbjct: 83 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRSTS-CNALKNKSLVGDK 141 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++++ N VA I ++ ++ LVVE+YSR Sbjct: 142 TPDHLTISLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 184 >gi|47606884|gb|AAT36362.1| ribosomal protein subunit 4 [Bryobrothera crenulata] Length = 200 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQKKSEVIINKNMEFYQKS 157 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 158 KIPNHLTYSSLEKKGLVKQILDRESIGLK-------INELLVVEYYSR 198 >gi|255116224|gb|ACU01164.1| small ribosomal protein subunit 4 [Meteoriella soluta] Length = 186 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 84 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 134 >gi|63191689|gb|AAY34806.1| small ribosomal protein subunit 4 [Loeskypnum badium] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|118430390|ref|YP_874655.1| ribosomal protein S4 [Hordeum vulgare subsp. vulgare] gi|152060552|sp|A1E9J3|RR4_HORVU RecName: Full=30S ribosomal protein S4, chloroplastic gi|118201044|gb|ABK79415.1| ribosomal protein S4 [Hordeum vulgare subsp. vulgare] Length = 201 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 15/210 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P +++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGK-LPSHLTID----TLE 170 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + + D + V ++ N LVVE+YSR Sbjct: 171 YKGLVNKILDRKW-VGLKINELLVVEYYSR 199 >gi|41323115|gb|AAR99787.1| small ribosomal protein 4 [Plagiochila frondescens] Length = 202 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTGKTLKSKSSYIERSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVP----YPVIMQ 196 + K K + V + + + +P +++ + ++P S+ + + + Sbjct: 138 TIGNKQKSQSVVTKNINSFQKLKIPSHLTFDS-------TQLPGSVNQMINREWINLKIN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|29422365|gb|AAO84578.1| small ribosomal protein 4 [Breutelia polygastrica] Length = 180 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + A +++G T L+ LE RLD +++R Sbjct: 19 KFSQYRIRLEENQKLRFHYG-ITERQLLNYDGIARKAKGSTGEVLLQLLEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 78 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKY 137 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 138 KIPNHLTYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 178 >gi|58293869|gb|AAW69882.1| small ribosomal protein 4 [Orthotrichum macrocephalum] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 93/165 (56%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H++VN R V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKY 146 Query: 163 DVPEYISVNH-DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +N FV K + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEN--KGFVNQILDRKLIGLKI--NELLVVEYYSR 187 >gi|62287264|sp|Q6H9K4|RR4_EQUSY RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927215|emb|CAE47543.1| small ribosomal protein 4 [Equisetum sylvaticum] Length = 207 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 6/192 (3%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 NL G V ++ Q + K S + ++L AKQ+++ YG ++E++ + + A Sbjct: 17 NLPGLTNKLVESKKNQASGSDQSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIA 75 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 ++G T L+ LE RLD I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK Sbjct: 76 RCAKGSTGQILLQLLEMRLDNILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKP 135 Query: 138 GDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + K+ Q A+ +P++ +S++ FV + + + + Sbjct: 136 KDIITIGAPKTYQSIITKRIEAFAKDQIPDHLTLSLSEPKKPKGFVNYLINRESIGLKI- 194 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 195 -NELLVVEYYSR 205 >gi|289599895|gb|ADD12898.1| ribosomal protein S4 [Hibbertia amplexicaulis] Length = 163 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 9/167 (5%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQL 159 TI ARQ VNHRH+LVN V+I SYRC D+I VK + K A + L++S Sbjct: 60 LGMASTIPGARQLVNHRHILVNDCIVDIPSYRCNPRDIITVKDEHKSRAMIQNYLDSS-- 117 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P+Y++++ +I S K V + LVVE+YSR Sbjct: 118 SHEELPKYLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 161 >gi|67035755|gb|AAY62808.1| small ribosomal protein subunit 4 [Muelleriella crassifolia] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH+H++VN R V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFITIKNRQK 136 >gi|67035787|gb|AAY62824.1| small ribosomal protein subunit 4 [Meteorium illecebrum] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 197 >gi|63101029|gb|AAY33139.1| small ribosomal protein 4 [Pseudoleskeopsis imbricata] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 131 >gi|63100989|gb|AAY33119.1| small ribosomal protein 4 [Dendropogonella rufescens] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNNGIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|86438898|emb|CAJ55424.1| small ribosomal protein 4 [Plagiochila hookeriana] Length = 187 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 13 PGLTSKTLKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 71 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 72 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 131 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 132 TIRNKQKSQSAI 143 >gi|118724319|gb|ABL10733.1| ribosomal protein small subunit 4 [Pellaea atropurpurea] Length = 170 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 3 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 61 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + + L+ Sbjct: 62 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRCKPKDIITIRNRPTSY-NALKVES 120 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 121 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 168 >gi|32401866|gb|AAP80921.1| small ribosomal protein 4 [Cephalotaxus drupacea] Length = 191 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 7/142 (4%) Query: 35 GLHGQRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF 91 G Q++ KP S + ++L+ KQ+++ YG ++E++ + A R++G TS L+ Sbjct: 14 GATCQKKHYKPINSSKYPVRLKEKQRVRFNYG-LTERQLLQYVRIARRAKGSTSQVLLQL 72 Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQ 149 LE RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I +K Q+S+ Sbjct: 73 LEMRLDNIIFRLGMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDQQRSRN 132 Query: 150 LASV-LEASQLAERDVPEYISV 170 + + + SQ + VP ++++ Sbjct: 133 IINKNINLSQKNKMRVPFHLNL 154 >gi|18568420|gb|AAL76079.1| ribosomal protein system 4 [Calliergon cordifolium] Length = 193 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 91 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 135 >gi|63191653|gb|AAY34788.1| small ribosomal protein subunit 4 [Rhytidium rugosum] gi|63191655|gb|AAY34789.1| small ribosomal protein subunit 4 [Dimerodontium balansae] Length = 195 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 137 >gi|78102703|gb|ABB21565.1| small ribosomal protein 4 [Plagiochila oresitropha] Length = 189 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNM 175 ++ K K + V + + + +P +++ N + Sbjct: 131 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFNSTQL 165 >gi|37992435|gb|AAR06396.1| small ribosomal protein 4 [Bryobrothera crenulata] Length = 190 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQKKSEVIINKNMEFYQKS 147 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVXQILDRESIGLK-------INELLVVEYYSR 188 >gi|63191647|gb|AAY34785.1| small ribosomal protein subunit 4 [Leskeadelphus bolivianus] Length = 199 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 141 >gi|63191657|gb|AAY34790.1| small ribosomal protein subunit 4 [Abietinella abietina] Length = 194 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 136 >gi|26399190|sp|Q9M4C1|RR4_MONFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017421|emb|CAB92137.1| small ribosomal protein 4 [Monoclea forsteri] Length = 202 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 14/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMK 59 MS+ + KI RR+G P T G Q +K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG----ALPGLTTKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A +++G T L+ LE RLD I++R T+ ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMALTVPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVAT 178 H+L+N V+I SY CK DVI +K + K + + + + + VP ++S + + Sbjct: 116 HILINNSMVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKSKVPNHLSFD----LMQ 171 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + + + D + ++++ N LVVE+YSR Sbjct: 172 VKGLVNQMIDREW-ILLKINELLVVEYYSR 200 >gi|67036034|gb|AAY62943.1| small ribosomal protein subunit 4 [Stenocarpidiopsis salicicola] Length = 194 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KXSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLINHRHILVNBXIVDIPSYRCKPQDFITIKNQRK 136 >gi|3914853|sp|O20234|RR4_IRIEN RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292909|emb|CAA92555.1| ribosomal protein S4 [Iris ensata] Length = 194 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 7/176 (3%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ A +++G T L+ L Sbjct: 22 GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVHIAGKAKGSTGRVLLQLL 80 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVNG V+I SYR K D+I K Q+SK L Sbjct: 81 EMRLDNILFRLGMASTIPGARQLVNHRHILVNGHIVDILSYRSKPRDIITTKDNQRSKAL 140 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A E ++P +++++ +I S K + + LVVE+YSR Sbjct: 141 IQNYLAWSPHE-ELPNHLTMDPFQYKGLVNQIIDS-KWIGLKI--NELLVVEYYSR 192 >gi|67035757|gb|AAY62809.1| small ribosomal protein subunit 4 [Orthomitrium tuberculatum] Length = 199 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H++VN R V+I SYRCK D I +K + K + + ++ Sbjct: 97 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKY 156 Query: 163 DVPEYISVN 171 +P +++ N Sbjct: 157 KIPNHLTYN 165 >gi|66866243|gb|AAY57790.1| small ribosomal protein 4 [Mesochaete undulata] Length = 191 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN + V+I SY+CK D I +K + K A + Sbjct: 84 GMAPTIPGARQLVNHRHILVNDQIVDIPSYQCKPQDFITIKDRQKSQAII 133 >gi|157689498|gb|ABV65305.1| ribosomal protein S4 [Hypseocharis bilobata] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD + Sbjct: 33 RARKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGPTGQVLLQLLEMRLDNTL 91 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNHRH+LVN V+I SYRCK D+I ++K K A + L++S Sbjct: 92 FRLGMASTIPRARQLVNHRHILVNDHIVDIPSYRCKPRDIITAREKPKSRALIQNSLDSS 151 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++++N +I S + + ++ LVVE+YSR Sbjct: 152 --PPKKLPNHLTLNPLQYKGLVNKIIDSKRA---GLKIKELLVVEYYSR 195 >gi|86438910|emb|CAJ55427.1| small ribosomal protein 4 [Plagiochila fruticella] Length = 194 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH+H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHKHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + + +P +++ + + + + ++ + + LV Sbjct: 131 TIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLRGS---VNQTINREWLILKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|294337130|emb|CAQ52715.1| ribosomal protein S4 [Haplohymenium longinerve] Length = 202 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|52783270|sp|Q6H9K5|RR4_EQUSC RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927213|emb|CAE47542.1| small ribosomal protein 4 [Equisetum scirpoides] Length = 207 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 4/170 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S + ++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 38 QSIQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 96 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE--A 156 I++R VPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + K S+L Sbjct: 97 ILFRLGVVPTIPSARQLINHRHILVNNRIVDVPSFHCKPKDIITIG-APKTYQSILSKRI 155 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A+ VPE+++++ + + + + LVVE+YSR Sbjct: 156 ESFAKDQVPEHLTLSLSEPKKPKGLVNYLINRESIGLTINELLVVEYYSR 205 >gi|37992473|gb|AAR06415.1| small ribosomal protein 4 [Cryptopapillaria penicillata] Length = 196 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 153 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 154 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 194 >gi|67035795|gb|AAY62828.1| small ribosomal protein subunit 4 [Regmatodon declinatus] Length = 199 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDSIVDIPSYRCKPQDFITIKNQRK 141 >gi|63191649|gb|AAY34786.1| small ribosomal protein subunit 4 [Lindbergia brachyptera] Length = 199 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 141 >gi|37992625|gb|AAR06491.1| small ribosomal protein 4 [Papillaria imponderosa] Length = 188 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 130 >gi|58293879|gb|AAW69886.1| small ribosomal protein 4 [Ulota phyllantha] Length = 189 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H++VN R V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHXHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFYQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTXNSXEKKGFVNQI---LDRELIGLKINELLVVEYYSR 187 >gi|90970054|gb|ABE02796.1| ribosomal protein S4 [Passiflora leptoclada] Length = 183 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RFGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|165968063|gb|ABY75857.1| ribosomal protein small subunit 4 [Asplenium lamprophyllum] Length = 188 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + +++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALINKSL 139 Query: 159 LAERDVPEYIS 169 + ++ P +++ Sbjct: 140 VGDK-TPNHLT 149 >gi|12330492|gb|AAG52783.1| ribosomal protein 4 [Orthotrichum anomalum] gi|58293877|gb|AAW69885.1| small ribosomal protein 4 [Orthotrichum jetteae] gi|58293895|gb|AAW69894.1| small ribosomal protein 4 [Muelleriella crassifolia] Length = 189 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH+H++VN R V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFITIKNRQK 131 >gi|74273123|gb|ABA01261.1| ribosomal protein S4 [Passiflora misera] Length = 183 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R + S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 19 RFGRKSQYCMRLEEKQKLRFHYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNIL 77 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 +R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 78 FRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 129 >gi|255116220|gb|ACU01162.1| small ribosomal protein subunit 4 [Acroporium secundum] Length = 185 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 83 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 127 >gi|118724313|gb|ABL10730.1| ribosomal protein small subunit 4 [Pellaea andromedifolia] gi|118724315|gb|ABL10731.1| ribosomal protein small subunit 4 [Pellaea andromedifolia var. pubescens] Length = 195 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ + + + Sbjct: 87 VIFQLGIASTIPAARQLVNHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSYNAA-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|67035998|gb|AAY62925.1| small ribosomal protein subunit 4 [Toloxis imponderosa] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 139 >gi|67035799|gb|AAY62830.1| small ribosomal protein subunit 4 [Phyllogonium fulgens] Length = 199 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 141 >gi|63101021|gb|AAY33135.1| small ribosomal protein 4 [Pseudotaxiphyllum elegans] Length = 189 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYSCLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|190361239|gb|ACE76924.1| ribosomal protein small subunit 4 [Abrodictyum caudatum] Length = 167 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 16/165 (9%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV++ Sbjct: 15 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQF 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN V+I SYRCK D+I L + + + + Sbjct: 74 GMAPTIPAARQLVNHRHILVNNTIVDIPSYRCKPKDLI-----------TLRSQESSRKK 122 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + N V +S + + + LVVE+YSR Sbjct: 123 IPDHLVFSSSEGNKPTGLVNEIASRESIDLNI--NELLVVEYYSR 165 >gi|78102717|gb|ABB21572.1| small ribosomal protein 4 [Plagiochila bicuspidata] Length = 189 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 +K K K Sbjct: 131 TIKNKQK 137 >gi|37992635|gb|AAR06496.1| small ribosomal protein 4 [Papillaria penicillata] gi|37992637|gb|AAR06497.1| small ribosomal protein 4 [Papillaria penicillata] Length = 188 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 145 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 186 >gi|328488178|gb|AEB19902.1| small ribosomal protein 4 [Schistochila pseudociliata] Length = 191 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 AIKNKKKSQSIITRNLNLLQKLKIPNHLTFDSTQLRGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|77862525|gb|ABB04535.1| small ribosomal protein 4 [Cyathodium tuberosum] Length = 171 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++ G T L+ LE RLD I++R Sbjct: 10 KISQYRIRLEEKQKLRFHYG-LTERQSLKYVRIARKAEGSTGQVLLQLLEMRLDNIIFRL 68 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAER 162 PTI +ARQ VNHRH+L+N +++I SY CK D+I +K + + + V + + L E+ Sbjct: 69 GVAPTIPSARQLVNHRHILINNNTISIPSYNCKSRDIITIKNRPQSQSIVKKNLKFLQEQ 128 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + ++ +I SLK + LVVE+YSR Sbjct: 129 KIPNHLNFDLIHLKGLVHQIIDREWISLK-------INELLVVEYYSR 169 >gi|12642246|gb|AAK00205.1| rps4 [Lorentziella imbricata] Length = 195 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 93 GMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKDRQKSQAMITKNIDFFQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 153 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|52788785|gb|AAU87373.1| ribosomal protein small subunit 4 [Asplenium scolopendrium] Length = 191 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 24 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 83 VIFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSL 142 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 143 VGDK-TPDHLTVSLSEGNRPTGLVNRVANRESINLNINEL---------LVVEYYSR 189 >gi|86438890|emb|CAJ55421.1| small ribosomal protein 4 [Plagiochila equitans] Length = 172 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 65 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 124 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 125 TIRNKQKSQSAI 136 >gi|328541106|gb|AEB21777.1| ribosomal protein S4 [Bazzania tricrenata] Length = 198 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 37 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 96 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNL 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 156 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 196 >gi|37992623|gb|AAR06490.1| small ribosomal protein 4 [Papillaria imponderosa] Length = 192 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 134 >gi|86438896|emb|CAJ55412.1| small ribosomal protein 4 [Plagiochila gigantea] Length = 196 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 17 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 76 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 135 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 136 TIRNKQKSQSAI 147 >gi|80974176|gb|ABB53781.1| small ribosomal subunit protein 4 [Ptychomnion falcatulum] Length = 197 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 135 >gi|41323089|gb|AAR99774.1| small ribosomal protein 4 [Plagiochila bifaria] Length = 202 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYSCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|294337126|emb|CAQ52713.1| ribosomal protein S4 [Gollania ruginosa] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|290467473|gb|ADD25854.1| small ribosomal protein 4 [Hymenophyllum malingii] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 10/170 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD IV+++ Sbjct: 23 KVSQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL----EASQL 159 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + Sbjct: 82 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSGSNSGSKENIEF 141 Query: 160 AER-DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 142 SRRKKIPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 189 >gi|222103526|gb|ACM44292.1| small ribosomal protein subunit 4 [Brachythecium plumosum] Length = 204 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 43 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 101 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 102 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 146 >gi|18568424|gb|AAL76081.1| ribosomal protein system 4 [Stereophyllum radiculosum] Length = 198 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKFEAIISKNIEFYQKS 155 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|67035773|gb|AAY62817.1| small ribosomal protein subunit 4 [Myurium hochstetteri] Length = 198 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 140 >gi|42556468|gb|AAS19829.1| small ribosomal protein 4 [Noteroclada confluens] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 30 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GD+I + + K +L + + + L + Sbjct: 89 GMVPTIPAARQLVNHRHVSINDHIIDIPSYNCKPGDIITINTREKFRLVNWRDMNSLQKP 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 149 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 189 >gi|42541373|gb|AAS19537.1| ribosomal protein small subunit 4 [Polypodiopteris brachypoda] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 29 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 T+ AARQ VNHRH+LVN VNI SYRCK D+I V+ + Sbjct: 88 GLASTVPAARQLVNHRHILVNSYVVNIPSYRCKPKDIITVRNR 130 >gi|67035771|gb|AAY62816.1| small ribosomal protein subunit 4 [Andoa berthelotiana] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 141 >gi|328488164|gb|AEB19895.1| small ribosomal protein 4 [Pachyschistochila trispiralis] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTILRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPN 198 +K K K + + L ++ +P NH +T +R + + + + Sbjct: 127 AIKNKKKSQSMITRNLNLLQKLKIP-----NHLTFDSTQLRGLVNQRIHRESINLKINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|49182797|gb|AAT57860.1| small ribosomal protein [Schistochila lehmanniana] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 33/194 (17%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTPKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K K K + + L ++ +P +++ + P+ L+ + + + + Sbjct: 131 AIKNKQKSQSMITRNLNLLQKPKIPNHLTFD-----------PTQLRGLVNQRVHRESIN 179 Query: 199 ------LVVEFYSR 206 LVVE+YSR Sbjct: 180 LKINELLVVEYYSR 193 >gi|46811024|gb|AAT01830.1| small ribosomal protein 4 [Jungermannia leiantha] Length = 197 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKVLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 132 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVN----HDNMVATFVRIPSSLKDVPYPVIMQ 196 VK K K + + + L ++ +P +++ + H ++ T R LK + Sbjct: 133 AVKNKQKSQSIITKNINLFQKSKIPSHLTFDSAKLHGSVNQTINREWVHLK-------IN 185 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 186 ELLVVEYYSR 195 >gi|18920791|gb|AAL82440.1| ribosomal protein system 4 [Struckia argentata var. zerovii] Length = 197 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMTPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRKSEAIINKNIEFYQKY 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|59803316|gb|AAX07766.1| Rps4 [Riccardia capillacea] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KS+ SY + L+L KQK++ ++G ++EK+ + A +++ Sbjct: 18 PGLTSRIPKSRSSYIDRSAPNKKISQYRLRLEEKQKLRFHHG-VTEKQLLNYVCVAKKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R VPTI AARQ VNHRHVL+N V+I SY CK GD+I Sbjct: 77 GSTGQLLLQLLEMRLDNTIFRLGMVPTIPAARQLVNHRHVLINANMVDIPSYNCKTGDII 136 Query: 142 EVKQKSK-QLASVLEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 +K + + QL LE+++++ + +P +++ + + R ++ + + Sbjct: 137 TIKNRVRNQLE--LESNRISVQKPGIPNHLAFESIDFRGSVNR---TIDREGIDLKINEL 191 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 192 LVVEYYSR 199 >gi|67036070|gb|AAY62961.1| small ribosomal protein subunit 4 [Leskeella nervosa] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 137 >gi|110590044|gb|ABG77465.1| ribosomal protein small subunit 4 [Equisetum arvense] Length = 178 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S + ++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 9 QSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 67 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ-KSKQLASVLEAS 157 I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK D+I + K+ Q Sbjct: 68 ILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKPKDIITIGAPKTYQSIITKRIE 127 Query: 158 QLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A+ +P++ +S++ FV + + + + LVVE+YSR Sbjct: 128 AFAKDQIPDHLTLSLSEQKKPKGFVNYLINRESIGLKI--NELLVVEYYSR 176 >gi|37992627|gb|AAR06492.1| small ribosomal protein 4 [Papillaria imponderosa] Length = 186 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 128 >gi|37992639|gb|AAR06498.1| small ribosomal protein 4 [Papillaria imponderosa] Length = 193 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 91 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 135 >gi|12330496|gb|AAG52785.1| ribosomal protein 4 [Ulota crispa] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH++VN R V+I YRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHIIVNHRIVDIPXYRCKPQDFITIKNRQK 131 >gi|67036108|gb|AAY62980.1| small ribosomal protein subunit 4 [Dolichomitra cymbifolia] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCVVDIPSYRCKPQDFITIKNQRK 141 >gi|66866229|gb|AAY57784.1| small ribosomal protein 4 [Rhizogonium pennatum] Length = 207 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 99 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 143 >gi|328541148|gb|AEB21798.1| ribosomal protein S4 [Lepidozia laevifolia] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 21/190 (11%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSNYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L + +P +++ + + + +I + +LK + Sbjct: 135 TIKDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSINQIINREWINLK-------IN 187 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 188 ELLVVEYYSR 197 >gi|111283702|gb|ABH09201.1| small ribosomal protein 4 [Geocalyx caledonicus] Length = 142 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 17 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+ +N +V+I SY C+ GD+I VK K K QL + + Sbjct: 76 GMAPTIPGARQLVNHRHISINNDTVDIPSYNCEPGDIITVKTKQKSQLIVTKNINLFQKL 135 Query: 163 DVPEYIS 169 +P +++ Sbjct: 136 KIPSHLT 142 >gi|80974180|gb|ABB53783.1| small ribosomal subunit protein 4 [Ptychomnion subaciculare] Length = 197 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 135 >gi|12642244|gb|AAK00204.1| rps4 [Lorentziella imbricata] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + ++ Sbjct: 92 GMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKDRQKSQAMITKNIDFFQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|300870623|ref|YP_003785494.1| 30S ribosomal protein S4 [Brachyspira pilosicoli 95/1000] gi|300688322|gb|ADK30993.1| 30S ribosomal protein S4 [Brachyspira pilosicoli 95/1000] Length = 208 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 5/168 (2%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R+ + S +G+Q+R KQK+K+ YG I EK+FR+ + EA+R G T NL+ LE RLD + Sbjct: 45 RKMKQLSEYGIQMREKQKVKRIYG-ILEKQFRNYYHEANRVAGVTGENLLRLLELRLDNV 103 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQ 158 VYR + ARQFV H + VNG+++++ SY K GD + Q+ + V E Sbjct: 104 VYRLGLAKSRAQARQFVQHGFINVNGKTMSVPSYSMKVGDKVSFSQRGNSITQVKELLDG 163 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L VP ++S++ V +P + + YP+ Q L++E+YS+ Sbjct: 164 LKSEYVPAWLSLDLSAKQGEIVTLPIR-EHIEYPINEQ--LIIEYYSK 208 >gi|294337279|emb|CAQ52788.1| ribosomal protein S4 [Thamnobryum tumidicaule] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKDQRKSETIISKNIELYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|156619648|gb|ABU88438.1| small ribosomal protein 4 [Aneura sp. Shaw s.n.] gi|156619670|gb|ABU88449.1| small ribosomal protein 4 [Aneura pinguis] gi|156619672|gb|ABU88450.1| small ribosomal protein 4 [Aneura pinguis] Length = 175 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + + L + Sbjct: 73 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVNWRDMNSLQKP 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 133 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 173 >gi|190361231|gb|ACE76920.1| ribosomal protein small subunit 4 [Callistopteris apiifolia] Length = 167 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 16/165 (9%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV++ Sbjct: 15 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFQL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH+LVN V+I SYRCK D+I + + + +++ Sbjct: 74 GMAPTIPAARQLVNHRHILVNNHIVDIPSYRCKPKDIITPRNR-----------EYSKKK 122 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S N + V ++ + + + LVVE+YSR Sbjct: 123 IPDHLILSFEEGNRLKGLVNGIANRESIDLNI--NELLVVEYYSR 165 >gi|63101063|gb|AAY33156.1| small ribosomal protein 4 [Pilotrichopsis dentata] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVNIPSYQCKPQDFITIKNQRK 137 >gi|294337208|emb|CAQ52753.1| ribosomal protein S4 [Miyabea fruticella] gi|294337210|emb|CAQ52754.1| ribosomal protein S4 [Miyabea rotundifolia] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|93213408|gb|ABF01130.1| ribosomal protein subunit 4 [Stereophyllum radiculosum] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKFEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|7576527|gb|AAF63876.1| ribosomal protein system 4 [Pterobryon densum] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQQK 132 >gi|7576537|gb|AAF63881.1| ribosomal protein system 4 [Myurium hochstetteri] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 132 >gi|86438878|emb|CAJ55409.1| small ribosomal protein 4 [Plagiochila chonotica] Length = 192 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 17 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 76 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 135 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 136 TIRNKQKSQSAI 147 >gi|328488180|gb|AEB19903.1| small ribosomal protein 4 [Schistochila sciurea] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD V+R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTVFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+L+N V+I SY C+ GD+I +K + K + + + L + Sbjct: 89 GMATTIPGARQLVNHRHILINNNIVDIPSYNCELGDIIAIKNEQKSQSIITKNLNLLHKL 148 Query: 163 DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P NH +T +R I + + + LVVE+YSR Sbjct: 149 KIP-----NHLTFDSTQLRGLINQKIHRESINLKINELLVVEYYSR 189 >gi|78102727|gb|ABB21577.1| small ribosomal protein 4 [Plagiochila vincentina] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTFKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTEQQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRSIVT 143 >gi|118626031|emb|CAL41742.1| small ribosomal protein 4 [Marsupella aquatica] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ V+ V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVDNDIVDIPSYSCELGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIELRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|56070063|gb|AAV70692.1| ribosomal protein 4 [Gnetum costatum] Length = 160 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 7/156 (4%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQK++ ++G ++E++ R + A + +G T L+ LE RLD I+Y+ TI Sbjct: 9 LQEKQKIRFHFG-LTERQLRQYVQIAKKVQGSTGQVLLQLLEMRLDNILYQLGLAGTIPG 67 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVL--EASQLAERDVPEYI 168 ARQ VNHRH+LVN VNI SYRCK DVI +K K+ QL +++ ++ E+ +P ++ Sbjct: 68 ARQLVNHRHILVNDYVVNIPSYRCKPQDVITIKGKNPDQLKTIITRNRNKAREKKIPYHL 127 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 +++ +I KD+ + + LV+E+Y Sbjct: 128 TLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYY 160 >gi|49182677|gb|AAT57801.1| small ribosomal protein [Bazzania sp. Davis 146] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 93 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNL 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 153 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 193 >gi|42556494|gb|AAS19842.1| small ribosomal protein 4 [Radula complanata] gi|118626059|emb|CAL41750.1| small ribosomal protein 4 [Radula complanata] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 23/191 (12%) Query: 32 YGPGLHGQRRKSKP------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR 79 Y PGL + K K S + ++L KQK++ +YG ++EK+ + A Sbjct: 6 YLPGLSNKTLKPKSISIDRSMSNKKISQYRIRLEEKQKLRFHYG-LTEKQLLKYVRIARN 64 Query: 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 +G T LI LE RLD I++ PTI ARQ VNH+H ++N +VNI SY C+ GD Sbjct: 65 IKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKHFVINNFTVNIPSYNCELGD 124 Query: 140 VIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI---M 195 +I V+ + K + + + L ++ ++P NH +T +R S + + Y I + Sbjct: 125 IITVRNRHKSKSIITKNMNLFQKLEIP-----NHLTFDSTQLR-GSINQRIDYNSINFKI 178 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 179 NELLVVEYYSR 189 >gi|328488158|gb|AEB19892.1| small ribosomal protein 4 [Pachyschistochila colensoana] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPN 198 +K K K + + L ++ +P NH +T +R + + + + Sbjct: 127 AIKNKKKSQSMITRNINLLQKLKIP-----NHLIFDSTQLRGLVNQRIHRESINLKINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|294337291|emb|CAQ52794.1| ribosomal protein S4 [Zelometeorium patulum] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P + ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTP---QLKSGSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMV 176 +LVN V+I SYRCK D + +K + K + + + ++ +P YI + +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKYKIPNHLTYIFLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|37992599|gb|AAR06478.1| small ribosomal protein 4 [Meteorium buchananii] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 147 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 188 >gi|37992513|gb|AAR06435.1| small ribosomal protein 4 [Euptychium setigerum] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I VK Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDXIIVK 132 >gi|32401896|gb|AAP80936.1| small ribosomal protein 4 [Juniperus communis] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 4/112 (3%) Query: 39 QRRKSKP---SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 +++ SKP S + ++L+ KQ+++ +YG + +++ + A R++G T L+ LE R Sbjct: 21 KKKHSKPLKSSQYPVRLKEKQRLRFHYG-LPKRQLLQYVRIARRAKGSTGQVLLQLLEMR 79 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 LD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D I +K+K Sbjct: 80 LDNILFRLGMALTIPEARQLVNHRHILVNGRIVDIPSYRCKPQDFISIKEKQ 131 >gi|11466789|ref|NP_039385.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|50233973|ref|YP_052751.1| ribosomal protein S4 [Oryza nivara] gi|109156597|ref|YP_654216.1| ribosomal protein S4 [Oryza sativa Indica Group] gi|62287252|sp|Q6ENH2|RR4_ORYNI RecName: Full=30S ribosomal protein S4, chloroplastic gi|148840862|sp|P0C486|RR4_ORYSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|148840865|sp|P0C487|RR4_ORYSI RecName: Full=30S ribosomal protein S4, chloroplastic gi|148840866|sp|P0C488|RR4_ORYSJ RecName: Full=30S ribosomal protein S4, chloroplastic gi|20146759|gb|AAM12495.1|AC074232_22 ribosomal protein S4 [Oryza sativa Japonica Group] gi|11986|emb|CAA33998.1| unnamed protein product [Oryza sativa Japonica Group] gi|42795489|gb|AAS46056.1| ribosomal protein S4 [Oryza sativa Indica Group] gi|42795556|gb|AAS46122.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|42795620|gb|AAS46185.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|49614997|dbj|BAD26780.1| ribosomal protein S4 [Oryza nivara] gi|290790575|gb|ADD62835.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|290790644|gb|ADD62903.1| ribosomal protein S4 [Oryza meridionalis] gi|226607|prf||1603356AD ribosomal protein S4 Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVNHDNM 175 +LVNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++++ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTIDTLQY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 172 KGLVKKI---LDRKWVGLKINELLVVEYYSR 199 >gi|328541110|gb|AEB21779.1| ribosomal protein S4 [Bazzania trilobata] Length = 196 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 35 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 94 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNL 153 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 154 KIPSHLTFDSIKLCGS---INQTINREWINLKINELLVVEYYSR 194 >gi|328541104|gb|AEB21776.1| ribosomal protein S4 [Chloranthelia denticulata] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+HV +N V+I SY CK GD+I ++ K K + + + L + Sbjct: 97 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNL 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 157 KIPSHLTFDSIELCGS---INQTINREWINLKINELLVVEYYSR 197 >gi|227345129|gb|ACP28117.1| small ribosomal protein 4 [Chiloscyphus spinifer] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLSSKTLKPKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIRDKDKSQSMITKNINLFQKLKIPSHLTFDSIKLQGS---VNQMINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|222103494|gb|ACM44276.1| small ribosomal protein subunit 4 [Entodon flavescens] Length = 203 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|42556436|gb|AAS19813.1| small ribosomal protein 4 [Jungermannia leiantha] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKVLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVN----HDNMVATFVRIPSSLKDVPYPVIMQ 196 VK K K + + + L ++ +P +++ + H ++ T R LK + Sbjct: 127 AVKNKQKSQSIITKNINLFQKSKIPSHLTFDSAKLHGSVNQTINREWVHLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|37992601|gb|AAR06479.1| small ribosomal protein 4 [Meteorium illecebrum] Length = 187 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 144 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 145 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 185 >gi|63191663|gb|AAY34793.1| small ribosomal protein subunit 4 [Dixonia thamnioides] gi|294337132|emb|CAQ52716.1| ribosomal protein S4 [Haplohymenium pseudotriste] gi|294337182|emb|CAQ52741.1| ribosomal protein S4 [Hypnum cupressiforme] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|222103514|gb|ACM44286.1| small ribosomal protein subunit 4 [Iwatsukiella leucotricha] Length = 203 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|77862533|gb|ABB04539.1| small ribosomal protein 4 [Mannia androgyna] Length = 201 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 18 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYVRIARKAK 76 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N V+I SY CK D+I Sbjct: 77 GSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRHILINNNPVDIPSYNCKPKDII 136 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + K +L + ++ +P +++ + + +I ++ Y I + LV Sbjct: 137 TIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLIQVKGLVNQIID--REWIYLKINEL-LV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|41323121|gb|AAR99790.1| small ribosomal protein 4 [Plagiochila orbicularis] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 27/191 (14%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKSKSRYINRATPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIAKKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIM 195 + KQKS+ + + + + +P +++ + + + ++ + +LK + Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGSVNQMINREWINLK-------I 189 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 190 NELLVVEYYSR 200 >gi|67036004|gb|AAY62928.1| small ribosomal protein subunit 4 [Cryptopapillaria penicillata] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 192 >gi|63101079|gb|AAY33164.1| small ribosomal protein 4 [Rhizofabronia persoonii] Length = 188 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ +NHRH+LVN V+I SYRCK D I +K K Sbjct: 86 GMAPTIPGARQLINHRHILVNDFIVDIPSYRCKPQDFITIKNK 128 >gi|52783271|sp|Q6H9K8|RR4_EQUPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927207|emb|CAE47539.1| small ribosomal protein 4 [Equisetum palustre] Length = 207 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 6/192 (3%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEA 77 NL G + ++ Q + K S + ++L AKQ+++ YG ++E++ + + A Sbjct: 17 NLPGLTNKLIESKKNQASGSDQSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIA 75 Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 ++G T L+ LE RLD I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK Sbjct: 76 RCAKGSTGQILLQLLEMRLDNILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKP 135 Query: 138 GDVIEVKQ-KSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + K+ Q A+ +P++ +S++ FV + + + + Sbjct: 136 KDIITIGAPKTYQSIITKRIESFAKDQIPDHLTLSLSEPKKPKGFVNYLINRESIGLKI- 194 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 195 -NELLVVEYYSR 205 >gi|227345141|gb|ACP28123.1| small ribosomal protein 4 [Eotrichocolea polyacantha] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTNKTLKPKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYLRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNEIVDIPSYNCEPGDTI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + +I + + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQI---INREWIHLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|222103528|gb|ACM44293.1| small ribosomal protein subunit 4 [Brachythecium plumosum] Length = 203 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 145 >gi|118724343|gb|ABL10745.1| ribosomal protein small subunit 4 [Pellaea glabella subsp. occidentalis] gi|118724345|gb|ABL10746.1| ribosomal protein small subunit 4 [Pellaea glabella subsp. simplex] Length = 187 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|99640040|emb|CAJ45145.1| putative ribosomal protein S4 gene [Sphaeropteris auriculifera] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 102/192 (53%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TRS Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRSAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVSLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|37992461|gb|AAR06409.1| small ribosomal protein 4 [Chrysocladium flammeum] Length = 186 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 128 >gi|67035807|gb|AAY62834.1| small ribosomal protein subunit 4 [Eulacophyllum cultelliforme] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKFEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLIYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|78102673|gb|ABB21550.1| small ribosomal protein 4 [Plagiochila hookeriana] Length = 172 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 131 TIRNKQKSQSAI 142 >gi|48527363|gb|AAT45814.1| small ribosomal protein 4 [Plagiochila chonotica] Length = 179 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASV 153 ++ K K +++ Sbjct: 138 TIRNKQKSQSAI 149 >gi|37992665|gb|AAR06511.1| small ribosomal protein 4 [Ptychomnion cygnisetum] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 132 >gi|67036058|gb|AAY62955.1| small ribosomal protein subunit 4 [Mahua enervis] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRKSEAIINKNIEFYQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|74273097|gb|ABA01248.1| ribosomal protein S4 [Passiflora amoena] Length = 183 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 8/125 (6%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R ++ S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIARSAFS-------RPARKSQYCIRLHEKQKLRFHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 KQKSK 148 K + K Sbjct: 121 KDEKK 125 >gi|294337178|emb|CAQ52739.1| ribosomal protein S4 [Hylocomiastrum umbratum] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGPTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITMKNQRK 144 >gi|294337124|emb|CAQ52712.1| ribosomal protein S4 [Glossadelphus ogatae] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|49182671|gb|AAT57798.1| small ribosomal protein [Metzgeria frontipilis] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 +K + + + ++E ++ +P +++ + ++ + R I D+ + L Sbjct: 131 TIKNQKRYRSIIMETLNSVQKPGIPNHLAFDSTKIIGSVNRMINREWIDLK----INELL 186 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 187 VVEYYSR 193 >gi|47606942|gb|AAT36391.1| ribosomal protein subunit 4 [Rhizogonium graeffeanum] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 92 GMTPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 136 >gi|328488176|gb|AEB19901.1| small ribosomal protein 4 [Schistochila lehmanniana] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 33/194 (17%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTPKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K K K + + L ++ +P +++ + P+ L+ + + + + Sbjct: 127 AIKNKQKSQSMITRNLNLLQKPKIPNHLTFD-----------PTQLRGLVNQRVHRESIN 175 Query: 199 ------LVVEFYSR 206 LVVE+YSR Sbjct: 176 LKINELLVVEYYSR 189 >gi|80974150|gb|ABB53768.1| small ribosomal subunit protein 4 [Garovaglia elegans] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKY 148 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 189 >gi|56070065|gb|AAV70693.1| ribosomal protein 4 [Gnetum parvifolium] gi|56070067|gb|AAV70694.1| ribosomal protein 4 [Gnetum indicum] gi|56070069|gb|AAV70695.1| ribosomal protein 4 [Gnetum montanum] Length = 160 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 7/156 (4%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQK++ ++G ++E++ R + + +G T L+ LE RLD I+YR TI Sbjct: 9 LQEKQKIRFHFG-LTERQLRQYVQITKKVQGSTGQVLLQLLEMRLDNILYRLGLAGTIPG 67 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERD--VPEYI 168 ARQ VNHRH+LVN VNI SY+CK DVI +K +K+ QL +++ ++ R+ +P ++ Sbjct: 68 ARQLVNHRHILVNDHVVNIPSYQCKPQDVITIKGKKTDQLKTIITRNRNKARENKIPYHL 127 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 +++ +I KD+ + + LV+E+Y Sbjct: 128 TLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYY 160 >gi|18920737|gb|AAL82413.1| ribosomal protein system 4 [Herzogiella adscendens] Length = 196 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 138 >gi|67036092|gb|AAY62972.1| small ribosomal protein subunit 4 [Cyrto-hypnum schistocalyx] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|51860523|gb|AAU11398.1| ribosomal protein small subunit 4 [Ephedra viridis] Length = 185 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 13/175 (7%) Query: 41 RKSKPSYFGLQ----LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 R S+P + Q L+ KQK++ +YG ++E++ R A ++G T L+ LE RL Sbjct: 13 RSSRPWWKKSQCLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRL 71 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D I++R TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + Sbjct: 72 DNILFRLGIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMK 131 Query: 157 SQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP Y++ N +I + KD+ + + LV+E+YSR Sbjct: 132 KSWGQLWKNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEMLVIEYYSR 183 >gi|294337154|emb|CAQ52727.1| ribosomal protein S4 [Homalia pennatula] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISQNIEFYQKY 159 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|212004153|gb|ACJ15385.1| Rps4 [Pellaea andromedifolia] Length = 184 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 17 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ + + + Sbjct: 76 VIFQLGIASTIPAARQLVNHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSYNAA-KVES 134 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 135 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 182 >gi|80974174|gb|ABB53780.1| small ribosomal subunit protein 4 [Ptychomnion densifolium] Length = 181 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 20 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 79 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 119 >gi|42556510|gb|AAS19850.1| small ribosomal protein 4 [Trichocolea tomentella] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKYSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ V HRH+ +N V+I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRPDNTIFRLGMAPTIPGARQLVTHRHISINNEIVDIPSYNCEPGDTI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ N + + + ++ + + LV Sbjct: 127 TIRNKQKSQSVITKNINLFQKLKIPSHLTFNSTQLRGS---VNQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|32401852|gb|AAP80914.1| small ribosomal protein 4 [Microstrobos fitzgeraldii] Length = 204 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 1/109 (0%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R K K S + ++L KQK + +YG +++++ + A R++G T L+ LE RLD I Sbjct: 11 REKEKKSQYRIRLEEKQKCRFHYG-LTDRQLLRYVRIARRAKGSTGQVLLQLLEMRLDNI 69 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 ++R TI ARQ +NHRH+LVNGR V+I SYRC DVI +K + + Sbjct: 70 LFRLGMTFTIPGARQLINHRHILVNGRIVDIPSYRCNPKDVITIKDQQR 118 >gi|222103486|gb|ACM44272.1| small ribosomal protein subunit 4 [Anomodon minor] Length = 197 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 139 >gi|83416502|gb|ABC18271.1| small ribosomal subunit protein 4 [Garovaglia elegans] Length = 186 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 25 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNE 126 >gi|66990678|emb|CAI29117.1| small ribosomal protein 4 [Plagiochila rubescens] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNLNSFQKLKIPSHLTFDLTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|47606896|gb|AAT36368.1| ribosomal protein subunit 4 [Garovaglia elegans] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 193 >gi|63100999|gb|AAY33124.1| small ribosomal protein 4 [Tomentypnum falcifolium] Length = 198 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 140 >gi|18920789|gb|AAL82439.1| ribosomal protein system 4 [Rhizofabronia sphaerocarpa] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ +NHRH+LVN V+I SYRCK D I +K K Sbjct: 93 GMAPTIPGARQLINHRHILVNDFIVDIPSYRCKPQDFITIKNK 135 >gi|80974168|gb|ABB53777.1| small ribosomal subunit protein 4 [Hampeella pallens] Length = 197 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G NL G +S ++ K S + ++L KQK++ +YG I+E++ Sbjct: 5 KIIRRLG-NLPGLTNKIPQLKSNS--INQSTSTKKISQYRIRLEEKQKLRFHYG-ITERQ 60 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNHR +LVN VN Sbjct: 61 LLNYVRIARKAKGSTGEVLLQLLEMRLDNILFRLNMAPTIPGARQLVNHRQILVNNCIVN 120 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMVATFV-RIPS 184 I SYRCK D I VK + + +++D +P Y S+ +V + R Sbjct: 121 IPSYRCKPQDFIIVKNLKSSEVIINKNKDFSQKDKIPNHLIYSSLEKKGLVNKILDRESI 180 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 LK + LVVE+YSR Sbjct: 181 GLK-------INELLVVEYYSR 195 >gi|37992527|gb|AAR06442.1| small ribosomal protein 4 [Garovaglia elegans] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 4/137 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G RS ++ K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLG-TLPGLTNKIPQVRS--SSINQSTSNKKMSQYRVRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T + LE RLD I++R PTI ARQ VNHRH+LVN VN Sbjct: 58 LLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVNDCIVN 117 Query: 130 IGSYRCKEGDVIEVKQK 146 I SYRCK DVI VK + Sbjct: 118 IPSYRCKPQDVIIVKNE 134 >gi|67036042|gb|AAY62947.1| small ribosomal protein subunit 4 [Okamuraea hakoniensis] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|222103472|gb|ACM44265.1| small ribosomal protein subunit 4 [Gollania varians] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|83416506|gb|ABC18273.1| small ribosomal subunit protein 4 [Ctenidium molluscum] Length = 196 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 138 >gi|42718092|gb|AAS38468.1| rps4 [Tayloria stenophysata] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQTSQAIINKNIEFHQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 147 KIPTHLVYNSLKKQGLVNQI---LDRESIGLKINELLVVEYYSR 187 >gi|23477320|gb|AAN34636.1| ribosomal protein small subunit 4 [Woodwardia virginica] Length = 185 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++ Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFHL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + + L + Sbjct: 82 GMASTIPAARQLVNHRHILVNNRVVDVPSYRCKPKDIITVRNRPTS-CNALRGESXGGGE 140 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ +S++ N V ++ + V + LVVE+YSR Sbjct: 141 TPDHLTVSLSEGNRPTGLVNRIANRESVNLNI--NELLVVEYYSR 183 >gi|67035949|gb|AAY62901.1| small ribosomal protein subunit 4 [Metaneckera menziesii] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|50235348|gb|AAT70707.1| Rps4 [Homalothecium megaptilum] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 137 >gi|62287265|sp|Q6H9K7|RR4_EQUPT RecName: Full=30S ribosomal protein S4, chloroplastic gi|48927209|emb|CAE47540.1| small ribosomal protein 4 [Equisetum pratense] Length = 207 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 2/134 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S + ++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 38 QSNQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 96 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ-KSKQLASVLEAS 157 I++R VPTI +ARQ +NHRH+LVN R V+I S+ CK D+I + K+ Q Sbjct: 97 ILFRLGVVPTIPSARQLINHRHILVNNRIVDIPSFHCKPKDIITIGAPKTYQSIITKRIE 156 Query: 158 QLAERDVPEYISVN 171 A+ +P++++++ Sbjct: 157 SFAKDQIPDHLTLS 170 >gi|222103532|gb|ACM44295.1| small ribosomal protein subunit 4 [Gollania varians] Length = 203 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|118626111|emb|CAL39355.1| small ribosomal protein 4 [Gymnocolea inflata] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G + PGL + K K SY + Sbjct: 1 MSRYRGPRVKIIRRLGAS---------------PGLTSKTLKLKSSYIDRSTSNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEY 167 I ARQ VNHRH+ VN +V+I SY C+ GD+I ++ K + + + L ++ +P + Sbjct: 105 IPGARQLVNHRHISVNNDTVDIPSYNCEPGDIITIRNGQKSQSIITKNINLFQKLKIPSH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + + + + LVVE+YSR Sbjct: 165 LTFDLTQLQGS---VDQMVNREWVNLKINELLVVEYYSR 200 >gi|80974172|gb|ABB53779.1| small ribosomal subunit protein 4 [Ptychomnion cygnisetum] gi|92417459|gb|ABE76825.1| ribosomal protein subunit 4 [Ptychomnion cygnisetum] Length = 200 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 39 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 98 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 138 >gi|294337122|emb|CAQ52711.1| ribosomal protein S4 [Glossadelphus glossoides] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|222103464|gb|ACM44261.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKSQRK 144 >gi|37992641|gb|AAR06499.1| small ribosomal protein 4 [Penzigiella cordata] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|7576585|gb|AAF63905.1| ribosomal protein system 4 [Leskea gracilescens] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|67036106|gb|AAY62979.1| small ribosomal protein subunit 4 [Leskea gracilescens] Length = 192 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 134 >gi|63100971|gb|AAY33110.1| small ribosomal protein 4 [Bryonorrisia acutifolia] Length = 198 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 140 >gi|328488190|gb|AEB19908.1| small ribosomal protein 4 [Schistochila glaucescens] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 33/194 (17%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD V+R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTVFRMGIATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + L ++ +P +++ + P+ L+ + I + + Sbjct: 127 AIKNEQKSQSIITRNLNLLQKVKIPNHLTFD-----------PTQLRGLVNQRIHRESIN 175 Query: 199 ------LVVEFYSR 206 LVVE+YSR Sbjct: 176 LKINELLVVEYYSR 189 >gi|294337138|emb|CAQ52719.1| ribosomal protein S4 [Heterocladium dimorphum] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E+RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIASYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + I S + ++ LVVE+YSR Sbjct: 177 NQILDRESIGSKINEL---------LVVEYYSR 200 >gi|151370788|gb|ABS11012.1| ribosomal protein subunit 4 [Rhizogonium novae-hollandiae] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDQQK 136 >gi|49182813|gb|AAT57868.1| small ribosomal protein [Triandrophyllum subtrifidum] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHIAINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 131 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGS---INQAINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|48527365|gb|AAT45815.1| small ribosomal protein 4 [Plagiochila deflexirama] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 78 GSTGQILLQLLEMRSDNTIFRLSMSPTIPGARQLVNHRHILINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K A V + + + +P +++ + + + + + + + LV Sbjct: 138 TIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|37992729|gb|AAR06543.1| small ribosomal protein 4 [Zelometeorium patulum] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|7576557|gb|AAF63891.1| ribosomal protein system 4 [Acroporium pungens] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHCMVDIPSYRCKPQDFITIKNQRK 133 >gi|63100987|gb|AAY33118.1| small ribosomal protein 4 [Callicladium haldanianum] gi|67035819|gb|AAY62840.1| small ribosomal protein subunit 4 [Eurohypnum leptothallum] gi|222103512|gb|ACM44285.1| small ribosomal protein subunit 4 [Iwatsukiella leucotricha] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|294337248|emb|CAQ52773.1| ribosomal protein S4 [Porotrichum substriatum] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|222103500|gb|ACM44279.1| small ribosomal protein subunit 4 [Anomodon minor] Length = 204 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 43 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 101 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 102 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 146 >gi|63191673|gb|AAY34798.1| small ribosomal protein subunit 4 [Levierella fabroniacea] gi|67036090|gb|AAY62971.1| small ribosomal protein subunit 4 [Actinothuidium hookeri] gi|67036096|gb|AAY62974.1| small ribosomal protein subunit 4 [Boulaya mitteni] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|52788791|gb|AAU87376.1| ribosomal protein small subunit 4 [Ceratopteris richardii] Length = 199 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD I+++ Sbjct: 37 KISQFCIRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNIIFQL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + SV + S + Sbjct: 96 GLASTIPAARQLVNHRHILVNQRIVDIPSYRRKPKDIITIRNRPTSYNSVKKES-FEGQK 154 Query: 164 VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++++ + V +S + V + LVVE+YSR Sbjct: 155 IPDHLTLSLLKTDQPTGLVNHMASRESVDLN--LNELLVVEYYSR 197 >gi|222103522|gb|ACM44290.1| small ribosomal protein subunit 4 [Entodon flavescens] Length = 203 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|7576569|gb|AAF63897.1| ribosomal protein system 4 [Hypnum imponens] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|67035815|gb|AAY62838.1| small ribosomal protein subunit 4 [Anomodon viticulosus] Length = 189 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|118724409|gb|ABL10778.1| ribosomal protein small subunit 4 [Pellaea doniana] Length = 195 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 87 VIFQLGMVSTIPAARQLVNHRHILVNHRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + V ++ + V + LVVE+YSR Sbjct: 146 LGRNEVPDHLTLSISKTSEPTGLVNHMANRESVNLDI--NELLVVEYYSR 193 >gi|42556432|gb|AAS19811.1| small ribosomal protein 4 [Isotachis humectata] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTPKQKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+ +N +V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHRHISINNETVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVL-EASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 ++ K + + + + ++P +++ + + + + I D+ + L Sbjct: 127 TIRNGEKSQSIITRNINSFHKSEIPNHLTFDSTKLRGSINKMIHREWIDLK----VNELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|37992621|gb|AAR06489.1| small ribosomal protein 4 [Papillaria imponderosa] gi|37992633|gb|AAR06495.1| small ribosomal protein 4 [Papillaria nigrescens] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKY 147 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 188 >gi|37548831|gb|AAO32684.1| ribosomal protein 4 [Alophosia azorica] Length = 192 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P + SY + K S + ++L KQK++ +YG ++E++ Sbjct: 1 IIRRLGALPGLTSKTPXSKSSY---IDRSXSNKKXSQYRIRLEEKQKLRFHYG-LTERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + A ++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I Sbjct: 57 LKYVRIARGAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHIXINDGIVDI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SY C+ GD I +K + K A + + L ++ +P +++ + + ++ Sbjct: 117 PSYXCQPGDFITIKNRQKSQAIITKNIBLFQKFKIPXHLTFDSSEXXGX---VNQTINRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 WIDLKINELLVVEYYSR 190 >gi|32401884|gb|AAP80930.1| small ribosomal protein 4 [Athrotaxis selaginoides] Length = 200 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 74/120 (61%), Gaps = 1/120 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 +PS + ++L+ KQ+++ +YG +++++ + A ++G T L+ LE RLD I++R Sbjct: 31 RPSKYPVRLKEKQRLRFHYG-LTDRQLLKYVRIARXAKGSTGQVLLQLLEMRLDNILFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K + + + + + ++D Sbjct: 90 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQRLINRINQNIDIFQKD 149 >gi|7576601|gb|AAF63913.1| ribosomal protein system 4 [Zelometeorium patulum] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 148 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|63101005|gb|AAY33127.1| small ribosomal protein 4 [Antitrichia curtipendula] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|117306746|emb|CAH73341.1| ribosomal protein S4 [Lepyrodon tomentosus] Length = 177 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ E RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRTARRAKGSTGEVLLQLPEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSEAII 130 >gi|117306734|emb|CAH73335.1| ribosomal protein S4 [Ptychomnion cygnisetum] Length = 183 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 81 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 121 >gi|37992631|gb|AAR06494.1| small ribosomal protein 4 [Papillaria nigrescens] Length = 188 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKY 145 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 186 >gi|37992465|gb|AAR06411.1| small ribosomal protein 4 [Cladomnion ericoides] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNE 134 >gi|67035913|gb|AAY62883.1| small ribosomal protein subunit 4 [Gradsteinia andicola] gi|67035915|gb|AAY62884.1| small ribosomal protein subunit 4 [Hygroamblystegium varium] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|63101007|gb|AAY33128.1| small ribosomal protein 4 [Pleuroziopsis ruthenica] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|124021086|gb|ABM88816.1| small ribosomal protein subunit 4 [Aneura pinguis] Length = 187 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 26 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQLLLQLLEMRLDNTIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + + L + Sbjct: 85 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLENWRDMNSLQKP 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 145 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 185 >gi|51458180|gb|AAU03438.1| ribosomal protein small subunit 4 [Asplenium simplicifrons] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRVARRTRGSTGQVLLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSFNALRNKSL 141 Query: 159 LAERDVPEYIS 169 + ++ P++++ Sbjct: 142 VGDK-TPDHLT 151 >gi|310707173|gb|ADP08972.1| Rps4 [Saccoloma elegans] Length = 173 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + + A +++G T + LE RLD +++ Sbjct: 11 KISQFCVRLEAKQRLRFSYG-LTERQPLNYVRIARKTKGSTGQVSLQLLEMRLDNVIFHP 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRC+ D+I V+ + ++VL + Sbjct: 70 GVASTIPAARQLVNHRHILVNNRIVDIPSYRCEPKDIITVRNRPTS-SNVLRNASFGRDK 128 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S+ N V ++ + V + LVVE+YSR Sbjct: 129 IPDHLTLSLTEGNRPTGLVNRIANRESVDLNI--NELLVVEYYSR 171 >gi|7576603|gb|AAF63914.1| ribosomal protein system 4 [Papillaria nigrescens] Length = 190 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKY 148 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 189 >gi|7576541|gb|AAF63883.1| ribosomal protein system 4 [Phyllogonium viride] Length = 188 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|67036116|gb|AAY62984.1| small ribosomal protein subunit 4 [Puiggariopsis aurifolia] Length = 194 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|165968075|gb|ABY75863.1| ribosomal protein small subunit 4 [Asplenium shuttleworthianum] Length = 188 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKMSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRNKSL 139 Query: 159 LAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P+++ +++ V ++ + + + LVVE+YSR Sbjct: 140 VGDK-TPDHLAFALSEGGRPTGLVNCIANRESINLNI--NELLVVEYYSR 186 >gi|41323123|gb|AAR99791.1| small ribosomal protein 4 [Plagiochila pulcherrima] Length = 202 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTGKTLKSKSSYIERSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSQSIVTK-NINSFHKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|32401898|gb|AAP80937.1| small ribosomal protein 4 [Juniperus sabina] Length = 191 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 7/163 (4%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG + E++ + A R++G T L+ LE RLD I++R Sbjct: 30 YPVRLKEKQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 88 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---V 164 TI ARQ VNHRH+LVNGR V I SYRCK D I +K+K + + ++ ++D V Sbjct: 89 TIPEARQLVNHRHILVNGRIVXIPSYRCKPQDFISIKEKQGLRNIMKKNREIFQKDKMRV 148 Query: 165 PEYIS-VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ + + + V+ K + + LVVE+YSR Sbjct: 149 PPHLNRIKQKSQYSGLVKKIIDNKRIGLKI--NELLVVEYYSR 189 >gi|294337120|emb|CAQ52710.1| ribosomal protein S4 [Glossadelphus baldwinii] Length = 202 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNRRK 144 >gi|108773404|ref|YP_635923.1| ribosomal protein S4 [Helicosporidium sp. ex Simulium jonesii] gi|122197338|sp|Q2EEX1|RR4_HELSJ RecName: Full=Plastid 30S ribosomal protein S4 gi|87242979|gb|ABD33971.1| ribosomal protein S4 [Helicosporidium sp. ex Simulium jonesi] Length = 173 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 94/161 (58%), Gaps = 3/161 (1%) Query: 1 MSKRESSKHKIDRRIGE-NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M + + +I RR+G+ L+ + K + ++ G ++ K +PS +GL+L AKQ+ Sbjct: 1 MGRYRGPRLRIIRRLGDLPLFTKKKPHIASKRLPLGHPVRKIKRRPSIYGLRLLAKQRCC 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + + + ++ K+A ++GD NLI LESRLD+ +YR+ V T+ AARQ + H Sbjct: 61 YSYG-LRDYQLKNYIKKARNAQGDPIKNLIFLLESRLDSKIYRSGIVSTMAAARQLITHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA 160 HVLV+ + I SY C E +++ K +K + ++E +L+ Sbjct: 120 HVLVDNIKITIPSYSCNESQILDYKN-TKLTSELIEKIKLS 159 >gi|67036066|gb|AAY62959.1| small ribosomal protein subunit 4 [Gollania philippinensis] Length = 195 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|67036110|gb|AAY62981.1| small ribosomal protein subunit 4 [Chrysohypnum diminutivum] Length = 199 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|63101047|gb|AAY33148.1| small ribosomal protein 4 [Ischyrodon lepturus] Length = 194 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|42556508|gb|AAS19849.1| small ribosomal protein 4 [Triandrophyllum subtrifidum] Length = 191 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHIAINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 127 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGS---INQAINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|37992673|gb|AAR06515.1| small ribosomal protein 4 [Schimperobryum splendidissimum] Length = 194 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+ ++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITXRQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFITIKNQRK 136 >gi|63101015|gb|AAY33132.1| small ribosomal protein 4 [Platygyriella aurea] Length = 194 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|86438886|emb|CAJ55411.1| small ribosomal protein 4 [Plagiochila dusenii] Length = 202 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLESKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCQPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|299008296|gb|ADJ00109.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008298|gb|ADJ00110.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008300|gb|ADJ00111.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008302|gb|ADJ00112.1| small ribosomal protein 4 [Radula lindenbergiana] Length = 184 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++EK+ + A +G T LI LE RLD I++ Sbjct: 23 KISQYRIRLEEKQKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H ++N +VNI SY C+ GD+I V+ + K + + + L ++ Sbjct: 82 GLAPTIPGARQLVNHKHFVINNFTVNIPSYNCELGDIITVRNRHKSKSIITKNMNLFQKL 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 ++P NH +T +R S + + Y I + LVVE+YSR Sbjct: 142 EIP-----NHLTFDSTQLR-GSINQRIDYNSINFKINELLVVEYYSR 182 >gi|228016979|gb|ACP51803.1| ribosomal protein S4 [Pinus banksiana] Length = 201 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRPSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|228015961|gb|ACP50801.1| ribosomal protein S4 [Pinus ponderosa] gi|228016414|gb|ACP51247.1| ribosomal protein S4 [Pinus thunbergii] gi|228016480|gb|ACP51312.1| ribosomal protein S4 [Pinus torreyana subsp. insularis] gi|228017479|gb|ACP52295.1| ribosomal protein S4 [Pinus merkusii] gi|228017735|gb|ACP52547.1| ribosomal protein S4 [Pinus pinaster] gi|270485094|gb|ACP51372.2| ribosomal protein S4 [Pinus torreyana subsp. torreyana] Length = 201 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|115443574|ref|YP_778593.1| 30S ribosomal protein S4 [Bigelowiella natans] gi|122233787|sp|Q06J34|RR4_BIGNA RecName: Full=30S ribosomal protein S4, chloroplastic gi|110810219|gb|ABG91425.1| 30S ribosomal protein S4 [Bigelowiella natans] Length = 194 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 18/174 (10%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + S +G L+ KQK++ YG ISE + K A R RG++ L+ LE RLDT Sbjct: 30 QNNNKQLSQYGFHLQEKQKLRYNYG-ISEHELIKYVKSARRKRGNSGDKLLQLLEMRLDT 88 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV-KQKSKQLA------ 151 ++YR FVPT+ +ARQ ++H H+ VNG+ V+I + C D I + K+ K L Sbjct: 89 LLYRTGFVPTVASARQLISHGHINVNGKKVDIPGFNCSISDKIVINKEILKSLNDKNNSF 148 Query: 152 SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 S L S L ++ ++++ T +P ++ + Y + + LV+E+YS Sbjct: 149 STLNCSHLVLNEL-------NNDLTITVTNLP-DIQVLGYSINIL--LVLEYYS 192 >gi|49182801|gb|AAT57862.1| small ribosomal protein [Kymatocalyx madagascariensis] Length = 195 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+ VN V+I SY C+ GD+I +K K K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHISVNNNLVDIPSYNCEPGDIITIKNKQKSQSIISKNLNSGQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I + + + LVVE+YSR Sbjct: 153 KIPSHLTFDLTQLQGS---INQKVNREWVNLKINELLVVEYYSR 193 >gi|7576657|gb|AAF63941.1| ribosomal protein system 4 [Brachythecium plumosum] Length = 188 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 131 >gi|67036114|gb|AAY62983.1| small ribosomal protein subunit 4 [Caribaeohypnum polypterum] Length = 199 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQRK 141 >gi|42556392|gb|AAS19791.1| small ribosomal protein 4 [Austrolejeunea nudipes] Length = 188 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 27 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFSL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 86 GMATTIPNARQLVNHKHIFINNYIVNIPSYNCKPGDIITIKNKEKSQSIINKNINLSQKL 145 Query: 163 DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P NH +T +R I +++ + + LVVE+YSR Sbjct: 146 QIP-----NHLTFDSTQLRGLINQTIRREWIDLKINELLVVEYYSR 186 >gi|37992685|gb|AAR06521.1| small ribosomal protein 4 [Squamidium macrocarpum] Length = 192 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 149 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 150 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 190 >gi|63101067|gb|AAY33158.1| small ribosomal protein 4 [Jaegerina scariosa] Length = 191 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN VNI SY+CK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVNIPSYQCKPQDFITIKNQRK 133 >gi|63101035|gb|AAY33142.1| small ribosomal protein 4 [Lepyrodon tomentosus] Length = 199 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 197 >gi|26399180|sp|Q9FT08|RR4_BUCRO RecName: Full=30S ribosomal protein S4, chloroplastic gi|10798455|emb|CAC12803.1| small ribosomal protein 4 [Bucegia romanica] Length = 202 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T + E RLD I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQISLQSSEMRLDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + + +L+++ Sbjct: 100 GIAPTIPGARQLVNHRHILVNNNIVNIPSYRCKPQDFITIKNSQKSQTIITKNIELSQKY 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 160 QIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 200 >gi|289576412|dbj|BAI77780.1| ribosomal protein small subunit 4 [Hymenophyllum serrulatum] Length = 186 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 24 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRHVLVN V+I SYRCK D+I V+ + S + Sbjct: 83 GMSATIPAARQLVNHRHVLVNNHIVDIPSYRCKPKDLITVRNRPSS-GSKENIGFSRRKK 141 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 142 IPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 184 >gi|157689404|gb|ABV65258.1| ribosomal protein S4 [Picramnia polyantha] Length = 168 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 9/172 (5%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLD 97 Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD Sbjct: 1 NQSRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLD 59 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---L 154 I++R TI ARQ VNH+H+ VN R V+I SYRCK D+I + + K + + L Sbjct: 60 NILFRLGMASTIPQARQLVNHKHIFVNSRIVDIPSYRCKPQDIITARDEQKSINLIQNYL 119 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++S ++P +++++ +I S K V + LVVE+YSR Sbjct: 120 DSS--PHEELPNHLTLHPIQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 166 >gi|58293873|gb|AAW69884.1| small ribosomal protein 4 [Orthotrichum affine] Length = 189 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHIIVNHSIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFYQKS 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 147 KIPNHLTYNSLEKKGVVNQI---LDRELIGLKINELLVVEYYSR 187 >gi|67035974|gb|AAY62913.1| small ribosomal protein subunit 4 [Porothamnium arbusculans] Length = 199 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 141 >gi|67036124|gb|AAY62988.1| small ribosomal protein subunit 4 [Bissetia lingulata] Length = 198 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 140 >gi|294337271|emb|CAQ52784.1| ribosomal protein S4 [Taxiphyllum aomoriense] Length = 202 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P SY ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGILPGLTNKTPQLKSSY---INQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|42556390|gb|AAS19790.1| small ribosomal protein 4 [Aphanolejeunea gracilis] Length = 188 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 27 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFSM 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 86 GMARTIPNARQLVNHKHIFINNYIVNIPSYNCKAGDIITIKNKEKSQSIINKNINLSQKL 145 Query: 163 DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P NH +T +R I +++ + + LVVE+YSR Sbjct: 146 QIP-----NHLTFDSTELRGLINQTIRREWIDLKINELLVVEYYSR 186 >gi|51458184|gb|AAU03440.1| ribosomal protein small subunit 4 [Asplenium elliottii] Length = 188 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L + Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSF-NALRSKS 138 Query: 159 LAERDVPEYIS 169 L P++++ Sbjct: 139 LVGDKTPDHLT 149 >gi|67035871|gb|AAY62862.1| small ribosomal protein subunit 4 [Rhacopilopsis trinitensis] Length = 194 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|63101031|gb|AAY33140.1| small ribosomal protein 4 [Iwatsukiella leucotricha] Length = 182 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 80 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 124 >gi|222103502|gb|ACM44280.1| small ribosomal protein subunit 4 [Thuidium tamariscinum] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|118724513|gb|ABL10830.1| ribosomal protein small subunit 4 [Cryptogramma acrostichoides] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 8/171 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK-SKQLASVLEAS 157 I+++ TI AARQ VNHRH+LVN R V+I SYRCK D++ ++ + + + A+ E+ Sbjct: 80 IIFQLGMASTIPAARQLVNHRHILVNHRIVDIPSYRCKPRDILTIRNRPTSRNAAKFES- 138 Query: 158 QLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L ++P++ +S+ A V ++ + V + LVVE+YSR Sbjct: 139 -LGGNEIPDHLILSLPKTGEPAGLVNQMANRESVDLNI--NELLVVEYYSR 186 >gi|7576595|gb|AAF63910.1| ribosomal protein system 4 [Hygroamblystegium tenax] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|3098232|gb|AAC15564.1| small ribosomal protein 4 [Thuidium tamariscinum] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNRRK 130 >gi|156619650|gb|ABU88439.1| small ribosomal protein 4 [Aneura sp. Shaw 657] Length = 175 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 14 KTSQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY C+ GD+I + + K +L + + + L + Sbjct: 73 GMVPTIPAARQLVNHRHVSINDHIIDIPSYNCRPGDIITINTREKFRLVNWRDINSLQKP 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I + +D Y I + LVVE+YSR Sbjct: 133 EIPNHLTFDSKEFLGSVQQIIN--RDWIYLKINEL-LVVEYYSR 173 >gi|63191763|gb|AAY34841.1| small ribosomal protein subunit 4 [Hypnodendron microstictum] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 89 GMALTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRPKSQAII 138 >gi|46811000|gb|AAT01818.1| small ribosomal protein 4 [Diplophyllum obtusifolium] Length = 197 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTFKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHISVNNATVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 V K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 133 TVVSKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSVNQMVNREWVNLK-------IN 185 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 186 ELLVVEYYSR 195 >gi|42556440|gb|AAS19815.1| small ribosomal protein 4 [Lejeunea catanduana] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 27 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFCL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+ +N VNI SY+CK GD+I +K K+K + + + L+++ Sbjct: 86 GMATTIPNARQLVNHKHIFINDYIVNIPSYKCKPGDIITIKNKAKSQSIINKNINLSQKL 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +++ + + LVVE+YSR Sbjct: 146 QIPNHLTFDSTKLQGL---VNQTIRREWIDLKINELLVVEYYSR 186 >gi|50235324|gb|AAT70695.1| Rps4 [Plasteurhynchium meridionale] Length = 195 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|255116222|gb|ACU01163.1| small ribosomal protein subunit 4 [Leptocladiella delicatula] Length = 182 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 21 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 80 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 124 >gi|124021092|gb|ABM88819.1| small ribosomal protein subunit 4 [Aneura pinguis] Length = 176 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 15 KTSQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY C+ GD+I + + K +L + + + L + Sbjct: 74 GMVPTIPAARQLVNHRHVSINDHIIDIPSYNCRPGDIITINTREKFRLVNWRDMNSLQKP 133 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 134 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 174 >gi|89147836|gb|ABD62766.1| ribosomal protein 4 [Noteroclada confluens] Length = 192 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 4/163 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 32 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+L+N V+I SY C+ GDVI VK + + + + + + Sbjct: 91 GMSSTIPGARQLVNHRHILINDNMVDIPSYNCEPGDVITVKNRRESQSIIAKNMEFQRPK 150 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++++N + ++ + + + LVVE+YSR Sbjct: 151 IPNHLTLNSIPFQGSVNQV---INRECIDLKINELLVVEYYSR 190 >gi|37992629|gb|AAR06493.1| small ribosomal protein 4 [Papillaria nigrescens] Length = 192 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKY 149 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 150 KIPNHLTYSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 190 >gi|18027956|gb|AAL55902.1| ribosomal protein S4 [Pterozonium cyclosorum] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 17/188 (9%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQK++ YG ++E++ + A Sbjct: 4 PGLMGKDKMSNSGDFRVASEQSASKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRCK Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNECIVDIPSYRCKPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 D+I ++ + +V + + +P++++++ + + + Sbjct: 123 DIITIRNRPI-FHNVSKDESIGRDGIPDHLTLSFSKAGERVGLVNHMASRESVDLDINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|7576523|gb|AAF63874.1| ribosomal protein system 4 [Henicodium geniculatum] Length = 190 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPQDFITIKNQRK 133 >gi|16565395|gb|AAL26212.1|AF313612_1 small ribosomal protein 4 [Pinus thunbergii] Length = 194 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 12 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 70 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 71 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 130 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 131 IRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 185 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 186 VVEYYSR 192 >gi|63100969|gb|AAY33109.1| small ribosomal protein 4 [Homaliadelphus targionianus] Length = 186 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 128 >gi|328541082|gb|AEB21765.1| ribosomal protein S4 [Mastigophora woodsii] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKPKSSYIDRSISNKKVSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNDIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + +I + + + LV Sbjct: 135 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLCGSINQI---INREWIHLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|290487080|gb|ADD29924.1| ribosomal protein S4 [Rhododendron simsii] Length = 208 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 40 KRKKSKYCIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNTLF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 R TI ARQ VNHRHVLVNGR ++I SYRCK D+I + + K A + Sbjct: 99 RLGMALTIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARDERKSRALI 150 >gi|146261583|gb|ABQ15101.1| ribosomal protein S4 [Rhodoleia championii] Length = 163 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 7/166 (4%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K S + ++L KQK++ + G ++E++ + A +++G T L+ LE RLD I++R Sbjct: 1 GKRSQYXIRLEEKQKLRFHXG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFR 59 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR V+I SYRCK D+I + QKS+ L S Sbjct: 60 LGMASTIPGARQLVNHRHILVNGRPVDIPSYRCKPRDIITARDEQKSRALIQNYIDSSPH 119 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E ++P++++++ +I S K V + LVVE+YSR Sbjct: 120 E-ELPKHLTLHPFQYKGLVNQIIDS-KWVGLKI--NELLVVEYYSR 161 >gi|118626017|emb|CAL39326.1| small ribosomal protein 4 [Marsupella lacerata] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ + KI RR+G L G +PKS RS K S + ++L Sbjct: 1 MSRYRGPRVKIIRRLGA-LPGLTSKTFKPKSSYIDRSTS--------NKKVSQYRIRLEE 51 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T L+ LE RLD +YR TI ARQ Sbjct: 52 KQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIYRLGMASTIPGARQ 110 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 VNHRH+ VN V+I SY C+ GD+I VK K K + + + L ++ +P +++ + Sbjct: 111 LVNHRHISVNNDIVDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPGHLTFDSI 170 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + ++ + + LVVE+YSR Sbjct: 171 ELRGS---VNQTINREWINLKINELLVVEYYSR 200 >gi|18028020|gb|AAL55934.1| ribosomal protein S4 [Jamesonia cinnamomea] Length = 190 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 5 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 59 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 60 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 119 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I ++ + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 120 PKDIITIRNRPI-FHNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 177 Query: 195 MQPNLVVEFYSR 206 V EFYSR Sbjct: 178 -NELFVGEFYSR 188 >gi|11121139|emb|CAC14785.1| ribosomal protein subunit 4 [Hookeria lucens] Length = 190 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+ VN VNI SYRCK D I +K + K A + Sbjct: 88 GMAPTIPGARQLVNHRHIGVNDCIVNIPSYRCKPQDFITIKNQQKSEAII 137 >gi|63191659|gb|AAY34791.1| small ribosomal protein subunit 4 [Ctenidium molluscum] gi|63191661|gb|AAY34792.1| small ribosomal protein subunit 4 [Hyocomium armoricum] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|37992557|gb|AAR06457.1| small ribosomal protein 4 [Hookeria lucens] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+ VN VNI SYRCK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHIGVNDCIVNIPSYRCKPQDFITIKNQQKSEAII 146 >gi|37992695|gb|AAR06526.1| small ribosomal protein 4 [Symphyodon imbricatifolius] Length = 194 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|63100991|gb|AAY33120.1| small ribosomal protein 4 [Henicodium geniculatum] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPQDFITIKNQRK 133 >gi|80974154|gb|ABB53770.1| small ribosomal subunit protein 4 [Garovaglia powellii] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 81/146 (55%), Gaps = 4/146 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G RS ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG-TLPGLTNKIPQVRS--SSINQSTSNKKISQYRVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T + LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK 146 + VN VNI SYRCK DVI VK + Sbjct: 117 IFVNDCIVNIPSYRCKPQDVIIVKNE 142 >gi|42417085|gb|AAS16370.1| ribosomal protein small subunit 4 [Hecistopteris pumila] Length = 187 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 2/167 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F L+L AKQ+++ YG ++E++ + A +++G T + LE RLDT Sbjct: 23 QLASKKISQFCLRLEAKQRLRINYG-LTERQLIKYVRIARKTKGSTGQVSLQLLEMRLDT 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI ARQ V+HRH+LVN R V+ S+RCK GD I VK + +V+ + Sbjct: 82 IIFQLGLASTIPTARQLVSHRHILVNRRIVDKPSFRCKPGDTITVKNLTT-CYNVVNSES 140 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 L VP+++++ N + + + + LVVE+YS Sbjct: 141 LQNNKVPDHLTLFLSNTDQPTGLVKHMVNRESVSLDINELLVVEYYS 187 >gi|67035777|gb|AAY62819.1| small ribosomal protein subunit 4 [Macrothamnium macrocarpum] gi|67036068|gb|AAY62960.1| small ribosomal protein subunit 4 [Gollania cylindricarpa] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|67035759|gb|AAY62810.1| small ribosomal protein subunit 4 [Ulota phyllantha] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH+H++VN R V+I SYRCK D I ++ + K Sbjct: 86 GMAPTIPGARQLVNHKHIIVNXRIVDIPSYRCKPQDFITIRNRQK 130 >gi|67035793|gb|AAY62827.1| small ribosomal protein subunit 4 [Leptopterigynandrum austro-alpinum] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQXLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|86438902|emb|CAJ55413.1| small ribosomal protein 4 [Plagiochila nobilis] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ G++I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINDDIVDIPSYNCEPGEII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K +++ + + + VP +++ + + + + + + ++ LV Sbjct: 138 TIRNRQKSQSAITKNINSFQKLKVPSHLTFDSTQLRGS---VNQMINREWINLKIKELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|222103562|gb|ACM44310.1| small ribosomal protein subunit 4 [Thuidium tamariscinum] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|37992681|gb|AAR06519.1| small ribosomal protein 4 [Squamidium leucotrichum] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNECIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|118626093|emb|CAL41755.1| small ribosomal protein 4 [Scapania compacta] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ VN +V+I SY C+ GD+I V+ K K + + + L ++ Sbjct: 89 GMATTIPGARQLVNHRHISVNNDTVDIPSYHCEPGDIITVRNKQKSQSIITKNLNLFQKL 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + ++ + + LVVE+YSR Sbjct: 149 KIPSHLTFDSTQLQGS---VNETVNREWINLKINELLVVEYYSR 189 >gi|49182696|gb|AAT57810.1| small ribosomal protein [Cyclolejeunea convexistipa] Length = 192 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 31 KISQYRIRLEEKQKLRFHYG-LTERQLLKFVRIARKTKGSTGQVLLQLLEMRLDNTIFCL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 90 GMATTIPNARQLVNHRHIFINDYIVNIPSYNCKPGDIITIKNKEKSQSIINKNINLSQKL 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +++ + + LVVE+YSR Sbjct: 150 QIPNHLTFDLTQLRGL---VNQTIRREWIDLKINELLVVEYYSR 190 >gi|37992431|gb|AAR06394.1| small ribosomal protein 4 [Beeveria distichophylloides] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNTIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + + Sbjct: 97 GMAPTIPGARQLVNHRHILVNKFIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYPKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGLINQI---LDRESIGLKINELLVVEYYSR 197 >gi|7576561|gb|AAF63893.1| ribosomal protein system 4 [Pseudoscleropodium purum] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 132 >gi|71679582|gb|AAZ38859.1| ribosomal protein small subunit 4 [Hymenophyllum javanicum] Length = 183 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 15/171 (8%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T L+ LE RLD IV++ Sbjct: 18 KVSQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + E + R Sbjct: 77 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITVRNRPSSYSRSKENIEFFRRK 136 Query: 163 DVPEYI--SVNHDNMVATFVRIPSSLKD-----VPYPVIMQPNLVVEFYSR 206 +P+++ S + DN IP L + + + LVVE+YSR Sbjct: 137 KIPDHLTFSFSEDN------NIPKGLVNGIANRESIDLNINELLVVEYYSR 181 >gi|50235334|gb|AAT70700.1| Rps4 [Lescuraea mutabilis] Length = 195 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|328488154|gb|AEB19890.1| small ribosomal protein 4 [Pachyschistochila berggrenii] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLSSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 AIKNNKKSQSMITRNLNLLQKLKIPNHLTFDSTQLRGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|283549372|dbj|BAI66348.1| small ribosomal protein 4 [Eocalypogeia quelpartensis] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A + + Sbjct: 12 PGLTSKTLKPKSSYIERSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRTARKVK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY CK GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIPSYHCKPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 VK K K +V + L ++ +P +++ + + Sbjct: 131 TVKNKQKSRLTVTKNISLFQKLKIPSHLTFDSTEL 165 >gi|51458190|gb|AAU03442.1| ribosomal protein small subunit 4 [Asplenium theciferum] Length = 195 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 28 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ + S Sbjct: 87 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSFNALRKKSL 146 Query: 159 LAERDVPEYIS 169 + ++ P++++ Sbjct: 147 VGDK-TPDHLT 156 >gi|7576579|gb|AAF63902.1| ribosomal protein system 4 [Thuidium delicatulum] Length = 190 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|63101033|gb|AAY33141.1| small ribosomal protein 4 [Scorpidium scorpioides] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 130 >gi|184128083|gb|ACC67941.1| ribosomal protein small subunit 4 [Ophioglossum reticulatum] Length = 170 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 10/168 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD I++R Sbjct: 6 KISQYCIRLEAKQRLRLNYG-LTERQLLKYVRIARRARGSTGQVSLQLLEMRLDNIIFRL 64 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 PTI ARQ VNHRH+LVN R V++ SY C D+I V+ + + +E+S Sbjct: 65 GMSPTIPGARQLVNHRHILVNDRVVDVPSYCCGPNDIITVRDRKNSQDLIRKNMESS--Y 122 Query: 161 ERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 E ++P + +S++ + + FV + + V L+VE+YSR Sbjct: 123 ESEIPNHLSLSLSKSDKLKGFVNRIIDRESIGLEV--NELLIVEYYSR 168 >gi|49182690|gb|AAT57807.1| small ribosomal protein [Ceratolejeunea coarina] Length = 192 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 31 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFCL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 90 GMATTIPNARQIVNHRHIFINDYIVNIPSYNCKPGDIITIKNKEKSQSIINKNITLSQKL 149 Query: 163 DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P NH +T +R I +++ + + LVVE+YSR Sbjct: 150 QIP-----NHLTFDSTQLRGLINQTIRREWIDLKINELLVVEYYSR 190 >gi|16565372|gb|AAL26202.1|AF313600_1 small ribosomal protein 4 [Salvinia molesta] gi|99640366|emb|CAJ45117.1| putative ribosomal protein S4 gene [Salvinia oblongifolia] Length = 201 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 16/195 (8%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 14 LAGKIPNPRETRIAA----DQSTPKKISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ PTI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 69 KTKGSTGQVSLQLLEMRLDNIIFHLGMAPTIPAARQSVNHRHILVNDRIVDVPSYRCKPR 128 Query: 139 DVIEVKQKSKQLAS-----VLEASQLAERDVPEYISV--NHDNMVATFVRIPSSLKDVPY 191 D I V+ + + S ++E+S+ +P+++++ + DN V ++ + + Sbjct: 129 DTITVRNRPTSINSSKRSDIVESSR--GNLIPDHLTLSFSEDNRPRGLVNQTATRESIDL 186 Query: 192 PVIMQPNLVVEFYSR 206 + VVE+YSR Sbjct: 187 NI--NELSVVEYYSR 199 >gi|222103448|gb|ACM44253.1| small ribosomal protein subunit 4 [Brachythecium salebrosum] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|80974166|gb|ABB53776.1| small ribosomal subunit protein 4 [Hampeella concavifolia] Length = 187 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNILFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHR +LVN VNI SYRCK D I VK + + +++D Sbjct: 85 NMAPTIPGARQLVNHRQILVNNCIVNIPSYRCKPQDFIIVKNLKSSEVRINKNKDFSQKD 144 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 145 KIPNHLIYSSLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 185 >gi|63101001|gb|AAY33125.1| small ribosomal protein 4 [Conardia compacta] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|228017217|gb|ACP52037.1| ribosomal protein S4 [Pinus leiophylla var. chihuahuana] Length = 201 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 40 KISQYRIRLEEKQKLRYHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRD 158 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ H F+ K + + LVVE+YSR Sbjct: 159 KLPNHLTF-HSLQYKGFINQIIDSKWINLKI--NELLVVEYYSR 199 >gi|37992419|gb|AAR06388.1| small ribosomal protein 4 [Aerobryum speciosum] Length = 193 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 91 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 135 >gi|51458182|gb|AAU03439.1| ribosomal protein small subunit 4 [Asplenium anisophyllum] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 24 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARRTRGSTGQVLLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 83 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSFNALRNKSL 142 Query: 159 LAERDVPEYIS 169 + ++ P++++ Sbjct: 143 VGDK-TPDHLT 152 >gi|26399122|sp|P59151|RR4_WOORA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23477336|gb|AAN34644.1| ribosomal protein small subunit 4 [Woodwardia radicans] Length = 185 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + + L+ + Sbjct: 82 GMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDIITVRNRPTS-CNALKGESPGGGE 140 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ + N +A + ++ ++ LVVE+YSR Sbjct: 141 TPDHLTASLSEGSRPTGLVNRIANRESVSLNINEL---------LVVEYYSR 183 >gi|49182762|gb|AAT57843.1| small ribosomal protein [Monoclea sp. Shaw 10151] Length = 187 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ + A +++ Sbjct: 4 PGLTTKTLKSKSGYINQSISNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RL+ I++R V T+ ARQ VNHRH+L+N V+I SY CK DVI Sbjct: 63 GSTGQVLLQLLEMRLNNILFRLGMVLTVPGARQLVNHRHILINNNMVDIPSYNCKPKDVI 122 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K + K + + + + + +P ++S + + + + + D + ++++ N Sbjct: 123 TIKDRPKSQSIITKNLNSFQKSKIPNHLSFD----LMQVKGLVNQMIDREW-ILLKINEL 177 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 178 LVVEYYSR 185 >gi|48527395|gb|AAT45830.1| small ribosomal protein 4 [Plagiochila patentissima] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHILINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 + K K A V + + + +P +++ + + + ++ + +LK + Sbjct: 138 TIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSVNQMINREWINLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|42405304|gb|AAS13478.1| rps4 small ribosomal protein [Rhynchostegiopsis flexuosa] Length = 194 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNNSIVDIPSYRCKPQDFITIKNQRK 136 >gi|548877|sp|P36473|RR4_TRARA RecName: Full=30S ribosomal protein S4, chloroplastic gi|439972|emb|CAA82451.1| ribosomal protein S4 [Tragus racemosus] Length = 196 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD IV+R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKKSTGQVLLQLLEMRLDNIVFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++V+ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTVD 167 >gi|62288924|sp|P69630|RR4_ALOPR RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288932|sp|P69638|RR4_CINLA RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288934|sp|P69640|RR4_DESFL RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288939|sp|P69645|RR4_LAMAU RecName: Full=30S ribosomal protein S4, chloroplastic gi|439920|emb|CAA82425.1| ribosomal protein S4 [Alopecurus pratensis] gi|439930|emb|CAA82433.1| ribosomal protein S4 [Cinna latifolia] gi|439932|emb|CAA82435.1| ribosomal protein S4 [Avenella flexuosa] gi|439948|emb|CAA82441.1| ribosomal protein S4 [Lamarckia aurea] gi|6002079|emb|CAA58949.1| ribosomal protein S4 [Sesleria caerulea] Length = 196 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNFIASSDPGK-LPKHLTID 167 >gi|78102633|gb|ABB21530.1| small ribosomal protein 4 [Plagiochila circinalis] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 AIRNKEK 137 >gi|78102725|gb|ABB21576.1| small ribosomal protein 4 [Plagiochila validissima] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRSIVT 143 >gi|48527353|gb|AAT45809.1| small ribosomal protein 4 [Plagiochila arbuscula] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNM-VATFVRIPSSLKDVPYPVIMQPN 198 + KQKS+ + + + + +P +++ + + V+ I L D+ + Sbjct: 138 IIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLRVSVNQMINRELIDLK----INEL 192 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 193 LVVEYYSR 200 >gi|86438906|emb|CAJ55426.1| small ribosomal protein 4 [Plagiochila obovata] Length = 163 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ FLE RLD ++R Sbjct: 12 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQFLEMRLDNTIFRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 PTI ARQ VNHRH+ +N V+I SY C+ GD+I ++ K K +++++ Sbjct: 71 GMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIITIRDKQKSQSAIIK 122 >gi|86438882|emb|CAJ55418.1| small ribosomal protein 4 [Plagiochila crozetensis] Length = 176 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 2 PGLTSKALKSKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 61 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 120 Query: 142 EVKQKSK 148 ++ K K Sbjct: 121 TIRNKQK 127 >gi|99640065|emb|CAJ45150.1| putative ribosomal protein S4 gene [Thyrsopteris elegans] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 14/203 (6%) Query: 10 KIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 KI RR+ L G+ +P TR Q K S F ++L AKQ+++ YG ++E Sbjct: 3 KIIRRLKNLPGLTGKASNPGETRVAA----DQSASKKISQFCVRLEAKQRLRFNYG-LTE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R + + A +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R Sbjct: 58 RLLRYV-RIARKTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIP 183 V+I SYRCK D+I V+ + + + R ++P+++ SV N V Sbjct: 117 VDIPSYRCKPKDIITVRNRPTSYNGLRGGINESSRGDEIPDHLTFSVLEGNRPKGLVNRI 176 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 ANRESIDLNI--NELLVVEYYSR 197 >gi|37683570|gb|AAQ98836.1| small ribosomal protein 4 [Pogonatum neocaledonicum] Length = 185 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + + K Y ++L KQK++ +YG I+E++ + + A +++ Sbjct: 2 PGLTNKTSQLKSGYINQTVSNKKISQNRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAK 60 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNH+H+LVNG VNI SYRCK D I Sbjct: 61 GSTGQILLQLLEMRLDNIIFRLGMALTIPEARQLVNHKHILVNGHIVNIPSYRCKPQDFI 120 Query: 142 EVK--QKSKQL-ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 +K Q+S+ L A ++ SQ + +P +++ + +I L + + Sbjct: 121 TIKNRQESQNLIAKNIDFSQ--KYKIPNHLTFKSLDKKGLINQI---LDRESIGLKINEL 175 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 176 LVVEYYSR 183 >gi|27452500|gb|AAO15278.1| ribosomal protein S4 [Afropteris barklyae] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I++R TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ + + +A Sbjct: 83 IIFRLGMSSTIPAARQLVNHRHILVNQRIVDIPSYRCKPRDIITIRNRPTS-HNAAKAES 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ A V ++ + V + LVVE+YSR Sbjct: 142 PGGGGIPDHLTLSLSKTGEPAGLVNHMANRESVDLDI--NELLVVEYYSR 189 >gi|67036012|gb|AAY62932.1| small ribosomal protein subunit 4 [Palamocladium leskeoides] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|328541072|gb|AEB21760.1| ribosomal protein S4 [Paracromastigum macrostipum] Length = 184 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A R++ Sbjct: 9 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQSLKYVRIARRAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 60 GSTGQVLLQSLEMRLDNTIFRLGMASTIPGARQLVNHRHIAINNNIVDIPSYNCQPGDII 119 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + + L + +P +++ + + + I ++ + + LV Sbjct: 120 TIRDKQRSQSIITKNVNLFQNLKIPSHLTFDSTKLCGS---INQTINREWIDLKINELLV 176 Query: 201 VEFYSR 206 VE+YSR Sbjct: 177 VEYYSR 182 >gi|208751323|gb|ACI31274.1| ribosomal protein S4 [Volvox carteri] gi|261888171|gb|ACY06026.1| ribosomal protein S4 [Volvox carteri f. nagariensis] Length = 260 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 25/184 (13%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT--RSYG--------PGLHGQRR--KSKP--- 45 MS+ + ++ RRIG+ K P R +G PG HG + K++P Sbjct: 1 MSRYLGPRLRVIRRIGKLRGFTRKKPFRRVFRGFGRSKGKVIPPGQHGLTKLLKTRPYDS 60 Query: 46 --SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 S + ++L+ KQ+++ YG I+E++ + ++A + + T L+ FLE RLD IV+R Sbjct: 61 SESDYLIRLKVKQRLRFNYG-ITERQLVNYVRKAKKIKESTGQVLLQFLEMRLDNIVFRL 119 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ ++H H+ VN + VNI SY CK DVI V K L +L ++ Sbjct: 120 NMAPTIPAARQLISHGHIRVNNKKVNIPSYMCKPKDVISVAMKQSSL-------KLVNKN 172 Query: 164 VPEY 167 + EY Sbjct: 173 LEEY 176 >gi|157154455|gb|ABV24934.1| ribosomal protein small subunit 4 [Asplenium trichomanes] Length = 178 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 75 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSLVGDK- 133 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 134 TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 176 >gi|118627518|emb|CAL39393.1| small ribosomal protein 4 [Calypogeia integristipula] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ + KI RR+G L G +PKS RS K S + ++L Sbjct: 1 MSRYRGPRVKIIRRLGA-LPGLTSKVLKPKSSYIDRSTS--------NKKVSQYRIRLEE 51 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A R +G T L+ LE RLD ++R TI ARQ Sbjct: 52 KQKLRFHYG-LTERQLLKYVRIARRVKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQ 110 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 VNHRH+ +N V+I SY C+ GD+I V++K K + + + + ++ +P +++++ Sbjct: 111 LVNHRHISINNNIVDIPSYNCEPGDIITVREKQKSQSIITKNINVFQKLKIPSHLTIDST 170 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + FV ++ + + LVVE+YSR Sbjct: 171 ELRG-FVN--QTINREWIDLKINELLVVEYYSR 200 >gi|80974170|gb|ABB53778.1| small ribosomal subunit protein 4 [Ptychomnion aciculare] Length = 197 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNILFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 135 >gi|45271074|gb|AAS56925.1| ribosomal protein small subunit 4 [Ceratopteris thalictroides] Length = 185 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD I+++ Sbjct: 23 KISQFCIRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVLLQLLEMRLDNIIFQL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + SV + S + Sbjct: 82 GLASTIPAARQLVNHRHILVNQRIVDIPSYRRKPKDIITIRNRPTSYNSVKKES-FEGQK 140 Query: 164 VPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++++ + V +S + V + LVVE+YSR Sbjct: 141 IPDHLTLSLLKTDQPTGLVNHMASRESVDLN--LNELLVVEYYSR 183 >gi|37992683|gb|AAR06520.1| small ribosomal protein 4 [Squamidium leucotrichum] Length = 193 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNECIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 150 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 151 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 191 >gi|37992727|gb|AAR06542.1| small ribosomal protein 4 [Zelometeorium patulum] Length = 172 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 75 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRK 119 >gi|18568422|gb|AAL76080.1| ribosomal protein system 4 [Hypnum cupressiforme] Length = 198 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+L+N V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILINDCIVDIPSYRCKPQDFITIKNQRK 140 >gi|67036048|gb|AAY62950.1| small ribosomal protein subunit 4 [Eurhynchium hians] Length = 194 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|165979144|gb|ABY77015.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979146|gb|ABY77016.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979150|gb|ABY77018.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979152|gb|ABY77019.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979154|gb|ABY77020.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979156|gb|ABY77021.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979158|gb|ABY77022.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979160|gb|ABY77023.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979162|gb|ABY77024.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979164|gb|ABY77025.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979166|gb|ABY77026.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] gi|165979168|gb|ABY77027.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRNKSL 139 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 140 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 186 >gi|51458142|gb|AAU03420.1| ribosomal protein small subunit 4 [Asplenium anceps] Length = 181 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 19 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 78 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSLVGDK- 136 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 137 TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 179 >gi|328541160|gb|AEB21804.1| ribosomal protein S4 [Lepidozia sp. 1 von Konrat 6/20-4] Length = 198 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 22 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 133 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSTKLRGS---INQTINRELINLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|99639995|emb|CAJ45136.1| putative ribosomal protein S4 gene [Cyathea parvula] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR+ Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRTAA----DQSVSRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYISVN--HDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P++++++ N V ++ + + + Sbjct: 128 DIITVRDRPTSYNGLRSGINESSRGDEIPDHLTISLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|37992469|gb|AAR06413.1| small ribosomal protein 4 [Crossomitrium rotundifolium] Length = 194 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI AARQ VNHRH++VN V+I SYRCK D I +K Sbjct: 92 GMAPTIPAARQLVNHRHIVVNDFLVDIPSYRCKSQDFITIK 132 >gi|7576551|gb|AAF63888.1| ribosomal protein system 4 [Brachythecium oxycladon] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 132 >gi|67036040|gb|AAY62946.1| small ribosomal protein subunit 4 [Cirriphyllum cirrosum] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|222103556|gb|ACM44307.1| small ribosomal protein subunit 4 [Brachythecium salebrosum] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|157272411|gb|ABV27020.1| ribosomal protein small subunit 4-like protein [Azolla microphylla] gi|157272413|gb|ABV27021.1| ribosomal protein small subunit 4-like protein [Azolla mexicana] gi|157272415|gb|ABV27022.1| ribosomal protein small subunit 4-like protein [Azolla mexicana] gi|157272417|gb|ABV27023.1| ribosomal protein small subunit 4-like protein [Azolla mexicana] gi|157272425|gb|ABV27027.1| ribosomal protein small subunit 4-like protein [Azolla microphylla] gi|157272427|gb|ABV27028.1| ribosomal protein small subunit 4-like protein [Azolla microphylla] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 12/170 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T + LE RLD I++ Sbjct: 37 KISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL-----ASVLEASQ 158 PTI AARQ VNHRH+LVN V++ SYRCK D+I V+ + L ++E+S+ Sbjct: 96 GMAPTIPAARQPVNHRHILVNDHIVDVPSYRCKPKDIITVRNRPTSLNGLKRTGIIESSR 155 Query: 159 LAERDVPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++++ + DN V ++ + + + VVE+YSR Sbjct: 156 --GNQIPDHLTLSFSEDNRPKGLVNKTATRESIDLNI--NELSVVEYYSR 201 >gi|93213404|gb|ABF01128.1| ribosomal protein subunit 4 [Hypnum cupressiforme] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+L+N V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILINDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|125662730|gb|ABN50315.1| small ribosomal protein 4 [Ephedra torreyana] Length = 203 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG + E++ R A ++G T L+ LE RLD I++R Sbjct: 38 KKSQYLVCLQEKQKIRFHYG-LPERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 97 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 156 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP Y++ N +I + KD+ + + LV+E+YSR Sbjct: 157 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEMLVIEYYSR 201 >gi|157689582|gb|ABV65347.1| ribosomal protein S4 [Viviania marifolia] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 1/113 (0%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R+ K S + ++L KQK++ +YG ++E++ + A +++G T L+ +E RLD + Sbjct: 14 RREKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGATGQVLLQLIEMRLDNTL 72 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 +R TI ARQ VNHRH+LVNG +V+I SYRCK D+I V+ + K A + Sbjct: 73 FRLGMAFTIPQARQLVNHRHILVNGHTVDIPSYRCKPRDIITVRDEEKSKALI 125 >gi|118724427|gb|ABL10787.1| ribosomal protein small subunit 4 [Aspidotis californica] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 22 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 81 IIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 139 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 140 LGRGEVPDHLTLSISKTNEATGLVNHMANRESVNLDI--NELLVVEYHSR 187 >gi|93213400|gb|ABF01126.1| ribosomal protein subunit 4 [Crossomitrium patrisiae] Length = 199 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI AARQ VNHRH++VN V+I SYRCK D I +K K K + + + ++ Sbjct: 97 GMAPTIPAARQLVNHRHIVVNDFLVDIPSYRCKSQDFITIKNKKKSKTIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGLVNQI---LDRESIDLKINELLVVEYYSR 197 >gi|78102663|gb|ABB21545.1| small ribosomal protein 4 [Plagiochila fusca] Length = 176 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRSARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 +K K K Sbjct: 131 AIKNKEK 137 >gi|41323111|gb|AAR99785.1| small ribosomal protein 4 [Plagiochila fruticosa] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTGKTLKSKSSYIERSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSQSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWLNLQINELL 193 Query: 200 VVEFYSR 206 V+E+YSR Sbjct: 194 VLEYYSR 200 >gi|51458095|gb|AAU03399.1| ribosomal protein small subunit 4 [Asplenium myriophyllum] Length = 190 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 23 QSTSKKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSF 141 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 142 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 188 >gi|26399182|sp|Q9FTC7|RR4_ANTPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|9971065|emb|CAC07204.1| small ribosomal protein 4 [Anthoceros punctatus] Length = 202 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQPKSETMISKNIELYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KVPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|156619660|gb|ABU88444.1| small ribosomal protein 4 [Aneura sp. Shaw 670] Length = 175 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + + L + Sbjct: 73 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLENWRDMNSLQKP 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 133 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 173 >gi|92417463|gb|ABE76827.1| ribosomal protein subunit 4 [Eurhynchium praelongum] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|37992617|gb|AAR06487.1| small ribosomal protein 4 [Orthostichopsis praetermissa] Length = 191 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPQDFITIKNQRK 133 >gi|67035943|gb|AAY62898.1| small ribosomal protein subunit 4 [Leptodon smithii] Length = 183 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ LE R D +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRSDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 140 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 141 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 181 >gi|255116226|gb|ACU01165.1| small ribosomal protein subunit 4 [Neodolichomitra yunnanensis] Length = 189 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKDQRK 131 >gi|37992663|gb|AAR06510.1| small ribosomal protein 4 [Ptychomnion aciculare] Length = 194 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNILFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 132 >gi|281332611|gb|ADA60892.1| ribosomal protein S4 [Neocheiropteris ensata] Length = 188 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 21 QSASRKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ T+ AARQ VNHRH+LVN V+I SYRCK D+I V+ + + Sbjct: 80 VIFHLGLASTVPAARQLVNHRHILVNSCVVDIPSYRCKPKDIITVRNRPTSYNASRNKFT 139 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P++ IS++ D+ V ++ + V + LVVE+YSR Sbjct: 140 GGDK-TPDHLAISLSEDDKPTGLVNCIANRESVNLNI--NELLVVEYYSR 186 >gi|51458103|gb|AAU03403.1| ribosomal protein small subunit 4 [Asplenium marinum] Length = 190 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 23 QSTSKKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSF 141 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 142 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 188 >gi|270300641|gb|ACZ69399.1| ribosomal protein S4 [Radula boryana] gi|270300643|gb|ACZ69400.1| ribosomal protein S4 [Radula gottscheana] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGE-----NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G+ N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGDLPGLSNKTLKPKSSYIDRSVS--------NKKISQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++EK+ + A ++G T L+ LE RLD ++ PTI ARQ Sbjct: 53 QKLRFHYG-LTEKQLLKYVRIARNAKGSTGQILLQLLEMRLDNTIFCLGMAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDN 174 VNH+H+ +N +V+I SY C+ GD+I ++ K + + + + + ++P ++ + Sbjct: 112 VNHKHIFINNSTVDIPSYNCELGDIITIRNTHKSKSIITKNINSFRKLEIPNHLIFDSTQ 171 Query: 175 MVATF-VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R+P + + + LVVE+YSR Sbjct: 172 LRGLINQRVPCNWISLK----INELLVVEYYSR 200 >gi|3098218|gb|AAC15557.1| small ribosomal protein 4 [Ulota phyllantha] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH+H++VN R V+I SYRCK D I ++ + K Sbjct: 86 GMAPTIPGARQLVNHKHIIVNXRIVDIPSYRCKPQDFITIRNRQK 130 >gi|63100993|gb|AAY33121.1| small ribosomal protein 4 [Spiridentopsis longissima] Length = 194 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPQDFITIKNQRK 136 >gi|7576545|gb|AAF63885.1| ribosomal protein system 4 [Haplohymenium triste] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLINHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|67035817|gb|AAY62839.1| small ribosomal protein subunit 4 [Haplohymenium triste] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLINHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|50235338|gb|AAT70702.1| Rps4 [Kindbergia praelonga] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|86438894|emb|CAJ55423.1| small ribosomal protein 4 [Plagiochila fusca] Length = 183 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRSARRAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 +K K K Sbjct: 138 AIKNKEK 144 >gi|42556420|gb|AAS19805.1| small ribosomal protein 4 [Herbertus sendtneri] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 P L + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 5 PSLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 64 GSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 123 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + I ++ + + LV Sbjct: 124 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLYGS---INQTINREWINLKINELLV 180 Query: 201 VEFYSR 206 VE+YSR Sbjct: 181 VEYYSR 186 >gi|47606922|gb|AAT36381.1| ribosomal protein subunit 4 [Ptychomnion aciculare] Length = 200 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 39 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNILFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 98 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 138 >gi|228017043|gb|ACP51866.1| ribosomal protein S4 [Pinus canariensis] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ +N V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRINDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|86438912|emb|CAJ55428.1| small ribosomal protein 4 [Plagiochila pleurata] Length = 180 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 TIRNKQK 144 >gi|548862|sp|P36451|RR4_BROER RecName: Full=30S ribosomal protein S4, chloroplastic gi|439922|emb|CAA82431.1| ribosomal protein S4 [Bromus erectus] Length = 196 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++V+ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGK-LPKHLTVD 167 >gi|299008266|gb|ADJ00094.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008268|gb|ADJ00095.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008270|gb|ADJ00096.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008272|gb|ADJ00097.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008274|gb|ADJ00098.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008276|gb|ADJ00099.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008278|gb|ADJ00100.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008280|gb|ADJ00101.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008282|gb|ADJ00102.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008284|gb|ADJ00103.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008286|gb|ADJ00104.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008288|gb|ADJ00105.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008290|gb|ADJ00106.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008292|gb|ADJ00107.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008294|gb|ADJ00108.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008304|gb|ADJ00113.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008306|gb|ADJ00114.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008308|gb|ADJ00115.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008310|gb|ADJ00116.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008312|gb|ADJ00117.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008314|gb|ADJ00118.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008316|gb|ADJ00119.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008318|gb|ADJ00120.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008320|gb|ADJ00121.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008322|gb|ADJ00122.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008324|gb|ADJ00123.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008326|gb|ADJ00124.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008328|gb|ADJ00125.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008330|gb|ADJ00126.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008332|gb|ADJ00127.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008334|gb|ADJ00128.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008336|gb|ADJ00129.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008338|gb|ADJ00130.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008340|gb|ADJ00131.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008342|gb|ADJ00132.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008344|gb|ADJ00133.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008346|gb|ADJ00134.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008348|gb|ADJ00135.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008350|gb|ADJ00136.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008352|gb|ADJ00137.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008354|gb|ADJ00138.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008356|gb|ADJ00139.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008358|gb|ADJ00140.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008360|gb|ADJ00141.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008362|gb|ADJ00142.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008364|gb|ADJ00143.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008366|gb|ADJ00144.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008368|gb|ADJ00145.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008370|gb|ADJ00146.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008372|gb|ADJ00147.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008374|gb|ADJ00148.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008376|gb|ADJ00149.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008378|gb|ADJ00150.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008380|gb|ADJ00151.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008382|gb|ADJ00152.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008384|gb|ADJ00153.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008386|gb|ADJ00154.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008388|gb|ADJ00155.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008390|gb|ADJ00156.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008392|gb|ADJ00157.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008394|gb|ADJ00158.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008396|gb|ADJ00159.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008398|gb|ADJ00160.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008400|gb|ADJ00161.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008402|gb|ADJ00162.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008404|gb|ADJ00163.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008406|gb|ADJ00164.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008408|gb|ADJ00165.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008410|gb|ADJ00166.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008412|gb|ADJ00167.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008414|gb|ADJ00168.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008416|gb|ADJ00169.1| small ribosomal protein 4 [Radula lindenbergiana] gi|299008418|gb|ADJ00170.1| small ribosomal protein 4 [Radula lindenbergiana] Length = 184 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++EK+ + A +G T LI LE RLD I++ Sbjct: 23 KISQYRIRLEEKQKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H ++N +VNI SY C+ GD+I V+ + K + + L ++ Sbjct: 82 GLAPTIPGARQLVNHKHFVINNFTVNIPSYNCELGDIITVRNRHKSKSIITRNMNLFQKL 141 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI---MQPNLVVEFYSR 206 ++P NH +T +R S + + Y I + LVVE+YSR Sbjct: 142 EIP-----NHLTFDSTQLR-GSINQRIDYNSINFKINELLVVEYYSR 182 >gi|42556496|gb|AAS19843.1| small ribosomal protein 4 [Radula okamurana] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 19/189 (10%) Query: 32 YGPGLHGQRRKSKP------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR 79 Y PGL + K K S + ++L KQK++ +YG ++EK+ + A Sbjct: 6 YLPGLSNKTLKPKSISIDRSMSNKKISQYRIRLEEKQKLRFHYG-LTEKQLLKYVRIARN 64 Query: 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 +G T LI LE RLD I++ PTI ARQ VNH+H ++N +VNI SY C+ GD Sbjct: 65 IKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKHFVINNFTVNIPSYNCELGD 124 Query: 140 VIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF-VRIPSSLKDVPYPVIMQP 197 +I ++ + K + + L ++ ++P +++ + + + RI + + + + Sbjct: 125 IITIRNRQKSKSIITRNMNLFQKLEIPNHLTFDSTQLRGSINQRIDCN--SINFKI--NE 180 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 181 LLVVEYYSR 189 >gi|7576641|gb|AAF63933.1| ribosomal protein system 4 [Crossomitrium rotundifolium] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI AARQ VNHRH++VN V+I SYRCK D I +K Sbjct: 89 GMAPTIPAARQLVNHRHIVVNDFLVDIPSYRCKSQDFITIK 129 >gi|74273115|gb|ABA01257.1| ribosomal protein S4 [Passiflora coriacea] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 6/120 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G G RKS+ + +L+ KQ+++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSAFWGSGRKSQ---YCRRLQEKQRLRFHYG-LTERQLLKYVRIATKAKGLTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 77 EMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 136 >gi|7576531|gb|AAF63878.1| ribosomal protein system 4 [Ptychomnion aciculare] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 30 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNILFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDSIVNIPSYRCKPQDFIIIK 129 >gi|294337142|emb|CAQ52721.1| ribosomal protein S4 [Heterocladium macounii] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G RS ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTPQLRS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ VP+ Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKVPDHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|190361223|gb|ACE76916.1| ribosomal protein small subunit 4 [Hymenophyllum tunbrigense] Length = 167 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 16/165 (9%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 15 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIVFQS 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+ VN V+I SYRCK D+I V+ + + + Sbjct: 74 GMSATIPAARQLVNHRHIWVNNHIVDIPSYRCKPKDLITVRNRG-----------FSRKK 122 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++ S + DN+ V ++ + + + LVVE+YSR Sbjct: 123 IPDHLTFSFSEDNIPKGLVNGIANRESIDLNI--NELLVVEYYSR 165 >gi|37992509|gb|AAR06433.1| small ribosomal protein 4 [Ephemeropsis trentepohlioides] Length = 219 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YYG +SE++ + + A +++G T L+ LE RLD+I++R Sbjct: 29 KISQYRIRLEEKQKLRFYYG-VSEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDSIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ ++HR++LVN V+I SYRCK D I +K K K Sbjct: 88 SMAPTIPGARQLISHRNILVNNFIVDIPSYRCKPQDFISMKNKEK 132 >gi|12330494|gb|AAG52784.1| ribosomal protein 4 [Orthotrichum alpestre] Length = 189 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH+H++VN R V+I SYRCK D + +K + K Sbjct: 87 GMAPTIPGARQLVNHKHIIVNHRIVDIPSYRCKPQDFLTIKNRQK 131 >gi|51458123|gb|AAU03411.1| ribosomal protein small subunit 4 [Asplenium hobdyi] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 24 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 83 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSI 142 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 143 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 189 >gi|190361265|gb|ACE76937.1| ribosomal protein small subunit 4 [Cephalomanes javanicum] Length = 167 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV++ Sbjct: 15 KVSEFCVRLEAKQRLRFNYGP-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 PTI AARQ VNHRH+L+N V+I SYRCK D+I ++ Sbjct: 74 GIAPTIPAARQLVNHRHILINNHMVDIPSYRCKPKDLITLR 114 >gi|92417447|gb|ABE76819.1| ribosomal protein subunit 4 [Metzgeria furcata] Length = 198 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 15 PGLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 74 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 133 Query: 142 EVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + + + ++E + L + +P +++ + + + + + + + LV Sbjct: 134 TIKNQERYRSIIMERFNSLQKPGIPNHLAFDSTKFIGS---VNQMINREWIDLEINELLV 190 Query: 201 VEFYSR 206 VE+YSR Sbjct: 191 VEYYSR 196 >gi|37992619|gb|AAR06488.1| small ribosomal protein 4 [Orthostichopsis tetragona] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPHDFITIKNQRK 133 >gi|37548827|gb|AAO32682.1| ribosomal protein 4 [Buxbaumia aphylla] Length = 193 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T + E RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQISLQSSEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + + +L+++ Sbjct: 91 GIAPTIPGARQLVNHRHILVNNNIVNIPSYRCKPQDFITIKNSQKSQTIITKNIELSQKY 150 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 151 KIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 191 >gi|51458201|gb|AAU03447.1| ribosomal protein small subunit 4 [Asplenium cuneatiforme] Length = 189 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 22 QSTSRKTSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ PTI AARQ VNHRH+ VN V+I SYRCK D I V+ + + L Sbjct: 81 VLFHLGMAPTIPAARQLVNHRHISVNNCIVDIPSYRCKPKDFITVRNRPTS-CNALRKKS 139 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 140 LVGGKTPDHLTVSLAEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|7576525|gb|AAF63875.1| ribosomal protein system 4 [Orthostichopsis tetragona] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPHDFITIKNQRK 133 >gi|26399124|sp|P59152|RR4_WOOUN RecName: Full=30S ribosomal protein S4, chloroplastic gi|23477340|gb|AAN34646.1| ribosomal protein small subunit 4 [Woodwardia unigemmata] Length = 185 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + + L+ + Sbjct: 82 GMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDIITVRNRPTS-CNALKGESPGGGE 140 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ + N +A + ++ ++ LVVE+YSR Sbjct: 141 TPDHLTASLSEGSRPTGLVNRIANRESVNLNINEL---------LVVEYYSR 183 >gi|38112446|gb|AAR11303.1| ribosomal protein S4 [Austrogramme marginata] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 17/188 (9%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQK++ YG ++E++ + A Sbjct: 4 PGLTGKDKTSNSGDFRVASEQSASKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRCK Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNECIVDIPSYRCKPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 D+I ++ K + + + +P++++++ + + + + Sbjct: 123 DIITIR-KRPIFHTAAKDEFIGRAGIPDHLTLSFSKAGEPVGLVNNMANRESVDLQINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|51458112|gb|AAU03407.1| ribosomal protein small subunit 4 [Asplenium cordatum] Length = 172 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 21 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S + E+ Sbjct: 80 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPNSCNALRNKSLVGEK- 138 Query: 164 VPEYISV 170 P++++V Sbjct: 139 TPDHLTV 145 >gi|11275973|gb|AAG33845.1| small ribosomal protein 4 [Leucoloma sp. La Farge 5555] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD ++ R Sbjct: 27 KISQYRVRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVISRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRC D I +K + L+ + +++ Sbjct: 86 GIAPTIPGARQLVNHRHILVNNCIVNIPSYRCXPXDFITIKDRQNFQNMTLKNTGFSQKY 145 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I + + + LVVE+YSR Sbjct: 146 KVPNHLTFNSLEKKGXVNQI---IDQESIGLKINELLVVEYYSR 186 >gi|165968071|gb|ABY75861.1| ribosomal protein small subunit 4 [Asplenium obtusatum] gi|190613944|gb|ACE80975.1| ribosomal protein small subunit 4 [Asplenium scleropium] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKMSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ + S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRKKSL 139 Query: 159 LAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P ++ +++ V ++ + + + LVVE+YSR Sbjct: 140 VGDK-TPNHLAFALSEGGRPTGLVNCIANRESINLNI--NELLVVEYYSR 186 >gi|118626137|emb|CAL39366.1| small ribosomal protein 4 [Leiocolea heterocolpos] gi|118626143|emb|CAL39369.1| small ribosomal protein 4 [Leiocolea heterocolpos] gi|118626155|emb|CAL39375.1| small ribosomal protein 4 [Leiocolea heterocolpos] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKALKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCESGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|78102709|gb|ABB21568.1| small ribosomal protein 4 [Plagiochila pleurata] Length = 165 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|48527407|gb|AAT45836.1| small ribosomal protein 4 [Plagiochila punctata] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNIYSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|58293893|gb|AAW69893.1| small ribosomal protein 4 [Zygodon forsteri] Length = 189 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDSLTIKNRQK 131 >gi|74273149|gb|ABA01274.1| ribosomal protein S4 [Passiflora xiikzodz] Length = 201 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 6/120 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G G RKS+ + +L+ KQ+++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSAFWGSGRKSQ---YCRRLQEKQRLRFHYG-LTERQLLKYVRIATKAKGLTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 77 EMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKNEQKSKDM 136 >gi|49182734|gb|AAT57829.1| small ribosomal protein [Jungermannia exsertifolia] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKPKSSYIDRSSSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYSCQLGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF-VRIPSSLKDVPYPVIMQPNL 199 VK K K + + + L ++ +P +++ + + RI ++ + L Sbjct: 131 TVKNKQKSQSMITKNINLFQKLKIPSHLTFDSIELRGYVNQRINREWINLK----INELL 186 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 187 VVEYYSR 193 >gi|32892120|gb|AAP88999.1| ribosomal protein S4 [Passiflora citrifolia] Length = 183 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 14/185 (7%) Query: 24 KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGD 83 KSP+ ++ R + S + ++ + KQK++ +YG ++E++ + A +++ Sbjct: 9 KSPIAGSAFS-------RPGRKSQYCIRFQEKQKLRLHYG-LTERQLLKYVRIAAKAKER 60 Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRCK D+I V Sbjct: 61 TGKVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDLITV 120 Query: 144 K--QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 K QKSK + + +P+++++ I S K V + LVV Sbjct: 121 KDEQKSKDMIQN-SLDSFRQEQLPKHLTLRRFQYKGLVNEIIDS-KWVGLEI--NELLVV 176 Query: 202 EFYSR 206 E+YSR Sbjct: 177 EYYSR 181 >gi|289599917|gb|ADD12909.1| ribosomal protein S4 [Hibbertia exasperata] Length = 166 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 9/169 (5%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 R K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I+ Sbjct: 2 RSGKRSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNIL 60 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEAS 157 +R TI ARQ VNH+H+LVN V+I SYRCK D+I VK + K A + L++S Sbjct: 61 FRLGMASTIPGARQLVNHKHILVNDGIVDIPSYRCKPRDIITVKDEHKSRALIQNYLDSS 120 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P++++++ +I S K + + LVVE+YSR Sbjct: 121 --PHEELPKHLTLHPFQYKGLINQIIDS-KWIGLKI--NELLVVEYYSR 164 >gi|124021100|gb|ABM88823.1| small ribosomal protein subunit 4 [Aneura maxima] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 30 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQLLLQLLEMRLDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 89 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 146 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 147 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 186 >gi|548876|sp|P36472|RR4_STICA RecName: Full=30S ribosomal protein S4, chloroplastic gi|439966|emb|CAA82450.1| ribosomal protein S4 [Stipa capensis] Length = 196 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L + +A D +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQ----NSIASSDPGKLPKHLTID 167 >gi|89031448|gb|ABD59461.1| Rps4 [Passiflora xiikzodz] gi|89031450|gb|ABD59462.1| Rps4 [Passiflora coriacea x Passiflora xiikzodz] Length = 171 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 6/120 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G G RKS+ + +L+ KQ+++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSAFWGSGRKSQ---YCRRLQEKQRLRFHYG-LTERQLLKYVRIATKAKGLTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 77 EMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKNEQKSKDM 136 >gi|32401765|gb|AAP80871.1| small ribosomal protein 4 [Pinus canariensis] Length = 184 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 2 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 60 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ +N V+I SY CK DVI Sbjct: 61 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRINDHMVDIPSYPCKPQDVIT 120 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 121 IRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 175 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 176 VVEYYSR 182 >gi|67035797|gb|AAY62829.1| small ribosomal protein subunit 4 [Orthostichopsis tetragona] Length = 199 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNHCIVDIPSYRCKPHDFITIKNQRK 141 >gi|170321467|gb|AAY62815.2| small ribosomal protein subunit 4 [Orthodontopsis bardunovii] Length = 203 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNH+H+LVN R V+I SYRCK D I +K + K A + + ++ Sbjct: 101 GMASTIPGARQLVNHKHILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIIDKNLDFYQKS 160 Query: 164 -VPEYISVN 171 +P +++ N Sbjct: 161 KIPNHLTYN 169 >gi|42556454|gb|AAS19822.1| small ribosomal protein 4 [Makinoa sp. He-Nygren 1295] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 G Q K S + ++L KQK++ +YG ++E++ A R++G T L+ LE Sbjct: 20 GFTNQASNKKLSQYRIRLEEKQKLRFHYG-LTERQLLKYVCIARRAKGSTGQVLLQLLEM 78 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLD I++R PTI +ARQ VNHRH+LVN V+I SY C+ +VI ++ K + ++ Sbjct: 79 RLDNIIFRLGMAPTIPSARQLVNHRHILVNNYPVDIPSYNCEPENVISIRDPKKSRSIII 138 Query: 155 EASQLAE-RDVPEYI 168 + L++ VP ++ Sbjct: 139 KNRDLSQGAKVPNHL 153 >gi|51458092|gb|AAU03398.1| ribosomal protein small subunit 4 [Asplenium aureum] Length = 185 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 19 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + + L+ Sbjct: 78 VIFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTS-CNALKNKS 136 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 137 LVGDKTPDHLTVSLSEGNRPTGLVNRVANRESINLNINEL---------LVVEYYSR 184 >gi|328541164|gb|AEB21806.1| ribosomal protein S4 [Lepidozia bisbifida] Length = 198 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 22 KPKSNYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 133 TIRDKQKSRSIIAKNVSLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|255116228|gb|ACU01166.1| small ribosomal protein subunit 4 [Pterobryopsis orientalis] Length = 187 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K K K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNKRK 129 >gi|89147828|gb|ABD62762.1| ribosomal protein 4 [Leiocolea heterocolpos] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKALKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCESGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|51458174|gb|AAU03435.1| ribosomal protein small subunit 4 [Asplenium obliquum] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 23 QSTSRKMSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ + S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRKKSL 141 Query: 159 LAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P ++ +++ V ++ + + + LVVE+YSR Sbjct: 142 VGDK-TPNHLAFALSEGGRPTGLVNCIANRESINLNI--NELLVVEYYSR 188 >gi|7576621|gb|AAF63923.1| ribosomal protein system 4 [Entodontopsis leucostega] Length = 153 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 2 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 60 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 61 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 105 >gi|63101055|gb|AAY33152.1| small ribosomal protein 4 [Pterobryopsis stolonacea] Length = 194 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K K K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNKRK 136 >gi|16930532|gb|AAL31951.1| ribosomal protein small subunit 4 [Asplenium cristatum] Length = 190 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 23 QSTSKKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSF 141 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I + ++ LVVE+YSR Sbjct: 142 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLDINEL---------LVVEYYSR 188 >gi|118626085|emb|CAL39346.1| small ribosomal protein 4 [Jungermannia polaris] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 14/149 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYIS 169 VK K K + + + L ++ +P +++ Sbjct: 138 TVKNKQKSQSIITKNINLFQKLKIPSHLT 166 >gi|46811060|gb|AAT01848.1| small ribosomal protein 4 [Treubia lacunosoides] Length = 197 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ A +++ Sbjct: 14 PGLTNKTLKSKLGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVGIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N ++V+I SY CK D+I Sbjct: 73 GSTGEVLLQLLEMRLDNIIFRLGLAFTIPGARQLVNHRHILINNKTVDIPSYHCKPKDLI 132 Query: 142 EVKQK-SKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K + QL + +P +++ + + +I +LK + Sbjct: 133 TIKNKPTSQLLITKNIDYSTKSQIPNHLTFDSVKKIGLVNQIIDREFINLK-------IN 185 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 186 ELLVVEYYSR 195 >gi|51458166|gb|AAU03431.1| ribosomal protein small subunit 4 [Asplenium lucidum] Length = 193 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 26 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ + S Sbjct: 85 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRKKSL 144 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDV-----PYPVIMQPNLVVEFYSR 206 + ++ + NH + P+ L + + + LVVE+YSR Sbjct: 145 VGDK------TPNHLTFALSEGGRPTGLVNCIANRESINLNINELLVVEYYSR 191 >gi|63101061|gb|AAY33155.1| small ribosomal protein 4 [Cryptogonium phyllogonioides] Length = 194 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SY+CK D I +K++ K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKKQQKSETIITKNIEFYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ ++ + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLINQILDRESIGLK-------INELLVVEYYSR 192 >gi|314906413|gb|ADT61779.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 180 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|108861128|gb|ABG21436.1| ribosomal protein small subunit 4 [Regnellidium diphyllum] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 11/156 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 9 LTGKASNPRETRVAA----DQSTSKKISQFCVRLEAKQRLRFNYG-VTERQLLRYVRIAR 63 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD +V++ PTI AARQ VNHRH+ VN R V++ SYRC+ Sbjct: 64 KTKGSTGQVPLQLLEMRLDNVVFQLGLAPTIPAARQLVNHRHISVNDRIVDVPSYRCEPQ 123 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISV 170 D+I V+ + + E+S+ +P+++S+ Sbjct: 124 DIITVRNRPTSCNVLKGGIFESSR--GNQIPDHLSL 157 >gi|89031446|gb|ABD59460.1| Rps4 [Passiflora coriacea] Length = 171 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 6/120 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G G RKS+ + +L+ KQ+++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSAFWGSGRKSQ---YCRRLQEKQRLRFHYG-LTERQLLKYVRIATKAKGLTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 77 EMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 136 >gi|49182778|gb|AAT57851.1| small ribosomal protein [Plagiochila austinii] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 27/191 (14%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDMVNIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIM 195 + KQKS+ + + S + +P +++ + + + ++ + +LK + Sbjct: 131 TIGNKQKSRSIVTK-NISSFQKLKIPSHLTFDSTQLQGSVNQMINREWINLK-------I 182 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 183 NELLVVEYYSR 193 >gi|165979148|gb|ABY77017.1| ribosomal protein small subunit 4 [Asplenium fontanum subsp. fontanum] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNYIVDIPSYRCKPKDFITVRNRPTSCNALRNKSL 139 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 140 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 186 >gi|157689478|gb|ABV65295.1| ribosomal protein S4 [Floerkea proserpinacoides] Length = 186 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 26/190 (13%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A +++G Sbjct: 4 PGLTSKRPKTVSDLRNQPHFGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKG 62 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D I Sbjct: 63 STGLVLLQLLEMRLDNILFRLGMALTIPQARQLVNHRHILVNNHIVDIPSYRCKPQDSIT 122 Query: 143 VK--QKSKQLASVLEASQLAERDVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQ 196 VK QKS+ L S + E + P+++ + ++ +V + R LK + Sbjct: 123 VKNEQKSRALIQNFNDSSVHE-EFPKHLTRHTFQYEGLVNQIIDRNWVGLK-------IN 174 Query: 197 PNLVVEFYSR 206 L+VE+YSR Sbjct: 175 ELLIVEYYSR 184 >gi|99639980|emb|CAJ45133.1| putative ribosomal protein S4 gene [Culcita macrocarpa] Length = 171 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 8/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E+ R + + A +++G T + LE RLD I++ + Sbjct: 7 KISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIARKTKGSTGQVPLQLLEMRLDNIIFHS 64 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVLEASQL 159 TI AARQ VNHRH+LVN R V+I SYRCK D+I V+ + + + E+S+ Sbjct: 65 GMTSTIPAARQLVNHRHILVNDRIVDIPSYRCKPKDIITVRDRPTSCNGPRSGINESSRG 124 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +S++ DN V ++ + + + +LVVE+YSR Sbjct: 125 DKTPDHLTLSLSEDNRPKGLVNRIANRESIELNI--NESLVVEYYSR 169 >gi|46486552|gb|AAS98712.1| ribosomal protein subunit 4 [Braithwaitea sulcata] Length = 199 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-IIERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNRQKSQAII 146 >gi|254995579|emb|CAO82748.1| ribosomal protein S4 [Lycopodium jussiaei] Length = 172 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L K K++ YG ++E+ + A +++G T L+ LE RLD I++R Sbjct: 11 KVSQYCIRLEEKXKLRFXYG-LTEQXLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH+H+LVN R++N+ SYRCK D+I + + + A + + ++ + Sbjct: 70 GMAPTIPGARQMVNHKHILVNNRAINVPSYRCKPKDIIATRDRPESRAIIAKNNKFSHTY 129 Query: 163 DVPEYISV 170 +P ++++ Sbjct: 130 KIPNHLTL 137 >gi|124021096|gb|ABM88821.1| small ribosomal protein subunit 4 [Aneura maxima] Length = 187 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 29 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQLLLQLLEMRLDNTIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 88 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 145 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 146 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 185 >gi|124021090|gb|ABM88818.1| small ribosomal protein subunit 4 [Aneura pinguis] Length = 189 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 31 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQLLLQLLEMRLDNTIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 90 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 147 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 148 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 187 >gi|78102697|gb|ABB21562.1| small ribosomal protein 4 [Plagiochila rutilans var. moritziana] Length = 189 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|118626015|emb|CAL39325.1| small ribosomal protein 4 [Nardia scalaris] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIPSYSCELGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|6002029|emb|CAA58921.1| ribosomal protein S4 [Arundo donax] Length = 196 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD IV+R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNIVFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++V+ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTVD 167 >gi|311901170|gb|ADQ13135.1| small ribosomal protein 4 [Nephrolepis biserrata] gi|311901172|gb|ADQ13136.1| small ribosomal protein 4 [Nephrolepis biserrata] gi|311901174|gb|ADQ13137.1| small ribosomal protein 4 [Nephrolepis biserrata] gi|311901176|gb|ADQ13138.1| small ribosomal protein 4 [Nephrolepis biserrata] gi|311901178|gb|ADQ13139.1| small ribosomal protein 4 [Nephrolepis biserrata] Length = 178 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKSPRKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 IPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|99640381|emb|CAJ45120.1| putative ribosomal protein S4 gene [Lygodium japonicum] Length = 200 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 5/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A ++ G T + LE RLD IV+R Sbjct: 35 KTSQFCIRLEAKQRLRFNYGS-TERQLLRYIRIARKAEGSTGQVSLQLLEMRLDNIVFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ---KSKQLASVLEASQLA 160 PTI AARQ VNHRH+ VN R V+I SYRCK D+I K S L S+ S Sbjct: 94 GMAPTIPAARQLVNHRHIPVNNRIVDIPSYRCKPKDIIASKGLLIPSGTLKSIGTES-FK 152 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+++++ T + + + + LVVE+YSR Sbjct: 153 RNEIPDHLTLFAAEADQTKGSVNGIVNRESIHLNINELLVVEYYSR 198 >gi|48527369|gb|AAT45817.1| small ribosomal protein 4 [Plagiochila dura] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 18/198 (9%) Query: 23 PKSPVNTRSYG-PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKK 69 P+ +N R PGL + KSK SY + ++L QK++ +YG ++E++ Sbjct: 7 PRVKINRRXGSLPGLTSKALKSKSSYIDRSTSNKKISQYRIRLEENQKLRFHYG-LTERQ 65 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+ Sbjct: 66 LLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVD 125 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKD 188 I SY C+ GD+I ++ K K + + + + + +P +++ + + + + + Sbjct: 126 IPSYSCEPGDIITIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINR 182 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 183 EWINLKINELLVVEYYSR 200 >gi|86438908|emb|CAJ55415.1| small ribosomal protein 4 [Plagiochila validissima] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIVT 150 >gi|124021088|gb|ABM88817.1| small ribosomal protein subunit 4 [Aneura pinguis] Length = 184 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 26 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 85 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 142 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 143 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 182 >gi|328541034|gb|AEB21741.1| ribosomal protein S4 [Kurzia sp. Brown 03/140a] Length = 203 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 18/203 (8%) Query: 10 KIDRRIGE--NLWGR---PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 KI RR+G L R PKS N RS K S + ++L KQK++ +YG Sbjct: 10 KIIRRLGALPGLTSRXLKPKSGXNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG- 60 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A R++G T + LE RLD + R TI ARQ VNHRH+ +N Sbjct: 61 LTERQSLKYVRIARRAKGSTGQVSLQLLEMRLDNTILRLGMASTIPEARQLVNHRHISIN 120 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD+I +K+K K + + + L + ++P +++ + + + R Sbjct: 121 KNIVDIPSYNCEPGDIITIKKKQKSQSVITKNVNLFQNLEIPSHLTFDLIKLCGSINR-- 178 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 179 -TINRESIDLKINELLVVEYYSR 200 >gi|156619317|gb|ABU88338.1| ribosomal protein S4 [Chlamydomonas moewusii] Length = 269 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 18/170 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV----------NTRSYGPGLHG--QRRKSKP--- 45 M++ + +I RRIG+ K P+ N R PG HG + K++P Sbjct: 15 MARYTGPRLRIIRRIGKLRGFTRKKPIRRKCTNKGYLNGRVIPPGQHGLVKLMKTRPYDS 74 Query: 46 --SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 S + ++L+ KQ+++ YG +SE++ + ++A + + T L+ LE R D IV+R Sbjct: 75 SQSDYLIRLKVKQRLRFNYG-LSERQLVNYIRKAKKIKEATGQVLLQLLEMRFDNIVFRL 133 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI AARQ + H H+ VN + VNI SY CK DVI V K L V Sbjct: 134 NMAPTIGAARQLITHGHIRVNNKKVNIPSYMCKPKDVISVAMKKTSLKLV 183 >gi|118626069|emb|CAL39338.1| small ribosomal protein 4 [Isopaches decolorans] Length = 153 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 5/153 (3%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ Sbjct: 3 KQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQ 61 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 VNHRH+ VN +V+I SY C+ GD+I +K K K + + + L ++ +P +++ + Sbjct: 62 LVNHRHISVNNDTVDIPSYNCEPGDIITIKNKQKSQSIITKNINLFQKLKIPSHLTFDLT 121 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + I ++ + + LVVE+YSR Sbjct: 122 QLRGS---INQTVNREWVNLKINELLVVEYYSR 151 >gi|29422375|gb|AAO84583.1| small ribosomal protein 4 [Quathlamba debilicostata] Length = 197 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-MTERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + + + + ++ Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPHDFITIKDRQRSQTIISKNIDFYQKY 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S N +I L + + LVVE+YSR Sbjct: 155 KIPNHLSYNSLENKGLVNQI---LDRESIGLKINELLVVEYYSR 195 >gi|294337118|emb|CAQ52709.1| ribosomal protein S4 [Giraldiella levieri] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A + +G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|51458119|gb|AAU03409.1| ribosomal protein small subunit 4 [Asplenium normale] Length = 176 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 14 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 73 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSIVGDK- 131 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 132 TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 174 >gi|305672313|gb|ADM63580.1| ribosomal protein S4 [Eremosyne pectinata] Length = 171 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 2/140 (1%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++G T L+ L Sbjct: 20 GSDLRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGRVLLQLL 78 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD ++R TI ARQ +NHRH+LVN R V+I SYRCK D I + + K A Sbjct: 79 EMRLDNTLFRLGMATTIPGARQLINHRHILVNDRIVDIPSYRCKPRDTITGRGEQKSRAL 138 Query: 153 VLEA-SQLAERDVPEYISVN 171 + + ++P +++++ Sbjct: 139 IQNSLDSFPNEELPNHLTLH 158 >gi|309322067|ref|YP_003933885.1| ribosomal protein S4 [Erodium texanum] gi|197131480|gb|ACH47258.1| ribosomal protein S4 [Erodium texanum] gi|300069160|gb|ADJ66282.1| ribosomal protein S4 [Erodium texanum] Length = 220 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 39 KKKQYHIRLEEKQKLRFHYG-LTERQLLQYVRLAGKAKGQTGQVLLQLLEMRLDNTLFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVNGR V+I SYRCK D+I ++K K Sbjct: 98 GMASTIPQARQLVNHRHILVNGRIVDIPSYRCKPRDIITGREKEK 142 >gi|49182667|gb|AAT57796.1| small ribosomal protein [Aneura pinguis] Length = 191 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 33 KISQYRIRLEEKQKLRLHYGLTERQLLKYVF-TARGAKGSTGQLLLQLLEMRLDNTIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 92 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 149 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 150 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 189 >gi|284468553|gb|ADB90337.1| ribosomal protein subunit 4 [Kindbergia praelonga] Length = 180 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|118626011|emb|CAL39323.1| small ribosomal protein 4 [Gymnocolea inflata] Length = 202 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKLKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDTVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + L ++ +P +++ + + + + + + + LV Sbjct: 138 TIRNGQKSQSIITKNINLFQKLKIPSHLTFDLTQLQGS---VDQMVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|11121333|emb|CAC14832.1| ribosomal protein subunit 4 [Splachnum ampullaceum] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A ++G T L+ LE RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARHAKGSTGEVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+ SYRCK D I +K + K Sbjct: 93 GLAPTIPGARQLVNHRHILVNERVVDRPSYRCKPQDFITIKDRQK 137 >gi|3098234|gb|AAC15565.1| small ribosomal protein 4 [Braithwaitea sulcata] Length = 184 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I E++ + + A +++G T L+ LE R D +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-IIERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K A + Sbjct: 82 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKNRQKSQAII 131 >gi|50235360|gb|AAT70713.1| Rps4 [Eurhynchiastrum pulchellum] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + +LVVE+YSR Sbjct: 153 KIPNHLTYSFLEKKGLVTQI---LDRESIGLKINESLVVEYYSR 193 >gi|49182815|gb|AAT57869.1| small ribosomal protein [Trichocolea tomentosa] Length = 195 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNEIVDIPSYNCEPGDTI 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 131 TIRNKQKSQSMITKNINLFQKLKIPSHLTFDLTQLQGS---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|51458161|gb|AAU03429.1| ribosomal protein small subunit 4 [Asplenium incisum] Length = 192 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 30 KISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S + ++ Sbjct: 89 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRNKSIVGDK- 147 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 148 TPDHLTVSLSEGDRPTGFVNRVANRESINLNINEL---------LVVEYYSR 190 >gi|165968061|gb|ABY75856.1| ribosomal protein small subunit 4 [Asplenium antiquum] Length = 188 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSNSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D++ V+ + ++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLVTVRNRPTSFNALRNKSL 139 Query: 159 LAERDVPEYIS 169 + ++ P++++ Sbjct: 140 VGDK-TPDHLT 149 >gi|51458144|gb|AAU03421.1| ribosomal protein small subunit 4 [Asplenium formosum] Length = 192 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 34 FCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHLGMAS 92 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ VNHRH+LVN V+I SYRCK D I V+ ++ ++ S + ++ P++ Sbjct: 93 TIPAARQLVNHRHILVNNCIVDIPSYRCKPKDSITVRNRATSCNALRNKSVVGDK-TPDH 151 Query: 168 --ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S++ D+ V ++ + + + LVVE+YSR Sbjct: 152 LTVSLSEDDRPTGLVNRVANRESINLNI--NELLVVEYYSR 190 >gi|118724341|gb|ABL10744.1| ribosomal protein small subunit 4 [Pellaea falcata var. nana] Length = 195 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRHVLVN R V+I SYR K D++ ++ + +V + Sbjct: 87 VIFKLGMASTIPAARQLVSHRHVLVNHRIVDIPSYRRKPKDILTIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE+YSR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYYSR 193 >gi|37992443|gb|AAR06400.1| small ribosomal protein 4 [Calyptrochaeta brownii] Length = 194 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQ 134 >gi|51458140|gb|AAU03419.1| ribosomal protein small subunit 4 [Asplenium trichomanes subsp. quadrivalens] Length = 184 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 22 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 81 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSLVGDK- 139 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 140 TPDHLTVSLSEGDRPTGLVNRVAKRESINLNINEL---------LVVEYYSR 182 >gi|67036072|gb|AAY62962.1| small ribosomal protein subunit 4 [Lescuraea radicosa] Length = 195 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVLFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|48527399|gb|AAT45832.1| small ribosomal protein 4 [Plagiochila patzschkei] Length = 202 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 32/219 (14%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + KSK +Y + Sbjct: 1 MSRYRGPRXKIIRRLGS---------------LPGLTSKTLKSKSNYIDRSTLNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PT Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPT 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEY 167 I ARQ VNHRH+ +N V+I SY C+ GD+I ++ K K + V + + +P + Sbjct: 105 IPGARQLVNHRHISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNIHSFQKLKIPSH 164 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + + + + + LVVE+YSR Sbjct: 165 LTFDSTQLRGS---VNQMINREWINLKINELLVVEYYSR 200 >gi|48527421|gb|AAT45843.1| small ribosomal protein 4 [Plagiochila subtropica] Length = 202 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 + K K A V + + + +P +++ + + + + I L D+ + L Sbjct: 138 IIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSVNQMINRELIDLK----INELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|165968073|gb|ABY75862.1| ribosomal protein small subunit 4 [Asplenium oblongifolium] Length = 188 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKMSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ S Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRNKSL 139 Query: 159 LAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P ++ +++ V ++ + + + LVVE+YSR Sbjct: 140 VGDK-TPNHLAFALSEGGRPTGLVNCIANRESINLNI--NELLVVEYYSR 186 >gi|20531062|gb|AAM27353.1| ribosomal protein 4 [Atrichum altecristatum] Length = 187 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S ++L KQK++ +YG I+ ++ + + A R++G T L+ LE RLD I++R Sbjct: 26 KISQXRIRLEEKQKLRFHYG-ITXRQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+LVN VNI SYRCK D I +K + + A + + +++ Sbjct: 85 GMASTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKDRQESQAIIARKNDFSQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + LVVE+YSR Sbjct: 145 KIPNHLTFNSLEKKGLVNQI---LDRESIGXKINELLVVEYYSR 185 >gi|37992545|gb|AAR06451.1| small ribosomal protein 4 [Hildebrandtiella cuspidans] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 92 SMAPTIPGARQLVNHRHILVNNCIVDIPSYQCKPQDFITIKNQRK 136 >gi|328541114|gb|AEB21781.1| ribosomal protein S4 [Acromastigum mooreanum] gi|328541116|gb|AEB21782.1| ribosomal protein S4 [Acromastigum sp. 'furcatifolium'] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKSKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINKNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ +++ + I ++ + + L+ Sbjct: 135 TIRDKQKSQSIITKNINLFQNLKIPSHLTF---DLIKLYGSINQTINRESIDLKINELLI 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|156619662|gb|ABU88445.1| small ribosomal protein 4 [Aneura sp. Wickett 468] Length = 175 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + + L + Sbjct: 73 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVNWRDMNSLQKP 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + +I +D Y I + LVVE+YSR Sbjct: 133 EIPNHLTFDSKEFFGSVQQIID--RDWIYLKINEL-LVVEYYSR 173 >gi|118724423|gb|ABL10785.1| ribosomal protein small subunit 4 [Argyrochosma limitanea] Length = 180 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 2/137 (1%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLES 94 G Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE Sbjct: 9 GXGDQSVSKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVLLQLLEM 67 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLD ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 68 RLDNVIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSY-NAM 126 Query: 155 EASQLAERDVPEYISVN 171 + L + +VP++++++ Sbjct: 127 KGESLGKDEVPDHLTLS 143 >gi|118625995|emb|CAL39319.1| small ribosomal protein 4 [Mnioloma fuscum] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K+K SY + ++L KQK++ +YG ++E++ + A R + Sbjct: 19 PGLTNKILKTKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRVK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK+K K + + L ++ +P +++ + + FV ++ + + LV Sbjct: 138 TVKKKQKSQFIIGKNLNLFQKLKIPSHLTFDPTELRG-FVN--QTINREWIDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|49182686|gb|AAT57805.1| small ribosomal protein [Cephalozia catenulata] Length = 195 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N ++I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNNDMIDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + L ++ +P +++ + + + + + + + LV Sbjct: 131 TIRNKEKSKSLVTKNINLFQKLKMPSHLTFDPIQLQGS---VNQMVNREGVNLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37683566|gb|AAQ98834.1| small ribosomal protein 4 [Pogonatum semipellucidum] Length = 174 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G L+ LE RLD I+++ Sbjct: 13 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSPGQILLQLLEMRLDNIIFQL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ V+H+H+LVN VNI SYRCK D I +K + K A + + +++ Sbjct: 72 GMAPTIPGARQLVSHKHILVNDHIVNIPSYRCKPQDFITIKNRQKSQAIIAKNIDFSQKY 131 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 132 KIPNHLTFNSLEKKGLVNQI---LDRELIGLKINELLVVEYYSR 172 >gi|37992547|gb|AAR06452.1| small ribosomal protein 4 [Hildebrandtiella endotrichelloides] gi|37992553|gb|AAR06455.1| small ribosomal protein 4 [Hildebrandtiella pachyclada] Length = 187 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 85 SMAPTIPGARQLVNHRHILVNNCIVDIPSYQCKPQDFITIKNQRK 129 >gi|37992543|gb|AAR06450.1| small ribosomal protein 4 [Hildebrandtiella cuspidans] Length = 188 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 86 SMAPTIPGARQLVNHRHILVNNCIVDIPSYQCKPQDFITIKNQRK 130 >gi|20531115|gb|AAM27378.1| ribosomal protein 4 [Leiomela bartramioides] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++ Sbjct: 92 GMASTIPRARQLVNHRHILVNDHIVDIPSYRCKPHDFITIKDRQKSQTIISKNIDFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ N +I L + + LVVE+YSR Sbjct: 152 EIPNHLTYNSSENKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|156619656|gb|ABU88442.1| small ribosomal protein 4 [Aneura sp. Shaw 725] gi|156619658|gb|ABU88443.1| small ribosomal protein 4 [Aneura sp. Shaw 702] Length = 175 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY C+ GD+I + + K +L + + + L + Sbjct: 73 GMVPTIPAARQLVNHRHVSINDHIIDIPSYNCRPGDIITINTREKFRLVNWRDMNSLQKP 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I +D Y I + LVVE+YSR Sbjct: 133 EIPNHLTFDSKEFLGSVQQIID--RDWIYLKINEL-LVVEYYSR 173 >gi|156619652|gb|ABU88440.1| small ribosomal protein 4 [Aneura sp. Shaw 675] gi|156619654|gb|ABU88441.1| small ribosomal protein 4 [Aneura sp. Shaw 697] gi|156619668|gb|ABU88448.1| small ribosomal protein 4 [Aneura pinguis] Length = 172 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 73 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 130 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 131 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 170 >gi|99640015|emb|CAJ45140.1| putative ribosomal protein S4 gene [Dicksonia squarrosa] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKASNPGETRVAA----DQSASKKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + + R ++P ++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGTNESSRGDEIPNHLTFSLLEGNRPKGLVNQIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|66990676|emb|CAI29116.1| small ribosomal protein 4 [Plagiochila stricta] Length = 198 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 TIRNKQK 144 >gi|67036032|gb|AAY62942.1| small ribosomal protein subunit 4 [Aerolindigia capillacea] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KVSQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDGIVDIPSYRCKPQDFVTIKNQRK 141 >gi|26399118|sp|P59149|RR4_NECCR RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504375|emb|CAC80632.1| small ribosomal protein 4 [Neckera crispa] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETMISKNIELYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|294337188|emb|CAQ52744.1| ribosomal protein S4 [Lembophyllum clandestinum] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|162415122|gb|ABX89135.1| ribosomal protein S4 [Tortula laureri] Length = 186 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG I+E + + + A +++G T L+ LE RLD +++R Sbjct: 27 SQYRIRLEEKQKLRFHYG-ITEXQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGM 85 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-V 164 TI ARQ VNHRH+LVN VNI SYRCK D I + + K + + ++ + Sbjct: 86 AXTIPGARQLVNHRHILVNXXIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFXQKSKI 145 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++ N +I L + + LVVE+YSR Sbjct: 146 PNHLTFNSLEKKGLINQI---LDQESIGLKINELLVVEYYSR 184 >gi|49182748|gb|AAT57836.1| small ribosomal protein [Lethocolea glossophylla] Length = 195 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 33/194 (17%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K+K +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKAKSTYIDHSTSNKKVSQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 71 GSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDVI 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI------ 194 VK K K + +++ L ++ VP +++ + P+ L+ + I Sbjct: 131 TVKDKQKSQSIIIKNIDLFQKSKVPSHLTFD-----------PTELRGLVNQTINRDLIN 179 Query: 195 --MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 180 LKINELLVVEYYSR 193 >gi|290790782|gb|ADD63039.1| ribosomal protein S4 [Potamophila parviflora] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L G + +RS L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTRKTPKSRS---NLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVNHDNM 175 +LVNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++++ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTIDTLQY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 172 KGLVKKI---LDRKWVGLKINELLVVEYYSR 199 >gi|78102713|gb|ABB21570.1| small ribosomal protein 4 [Plagiochila radiculosa] Length = 189 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|23477318|gb|AAN34635.1| ribosomal protein small subunit 4 [Hymenasplenium cheilosorum] Length = 185 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 18 QSTSKKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 77 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSF 136 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I + ++ LVVE+YSR Sbjct: 137 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLDINEL---------LVVEYYSR 183 >gi|20531117|gb|AAM27379.1| ribosomal protein 4 [Streptopogon calymperes] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ V+HRH+LVN R VNI SYRCK D I + + K + + +++ Sbjct: 89 GMALTIPGARQLVSHRHILVNDRIVNIPSYRCKPQDFITISDRKKSQVIITKNVDSSQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLIFNSLEKKGLINQI---LNQESIGLKINELLVVEYYSR 189 >gi|63191751|gb|AAY34835.1| small ribosomal protein subunit 4 [Macromitrium levatum] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNYRMVDIPSYRCKPLDFITIKDRRK 136 >gi|118625957|emb|CAL39300.1| small ribosomal protein 4 [Lethocolea glossophylla] gi|118625959|emb|CAL39301.1| small ribosomal protein 4 [Lethocolea glossophylla] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 33/194 (17%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K+K +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKAKSTYIDHSTSNKKVSQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 78 GSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDVI 137 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI------ 194 VK K K + +++ L ++ VP +++ + P+ L+ + I Sbjct: 138 TVKDKQKSQSIIIKNIDLFQKSKVPSHLTFD-----------PTELRGLVNQTINRDLIN 186 Query: 195 --MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 187 LKINELLVVEYYSR 200 >gi|63101051|gb|AAY33150.1| small ribosomal protein 4 [Palisadula chrysophylla] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I+++ Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNIIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|62288935|sp|P69641|RR4_ELYCA RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288938|sp|P69644|RR4_HORMA RecName: Full=30S ribosomal protein S4, chloroplastic gi|7440155|pir||S41269 ribosomal protein S4, chloroplast - Hordeum murinum chloroplast (fragment) gi|439936|emb|CAA82437.1| ribosomal protein S4 [Elymus canadensis] gi|439944|emb|CAA82440.1| ribosomal protein S4 [Hordeum murinum] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGK-LPKHLTID 167 >gi|228016028|gb|ACP50867.1| ribosomal protein S4 [Pinus resinosa] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 16/185 (8%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 ++ + + A + + L +RD +P +++ + +I S K + + LVV Sbjct: 138 IRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGLINQIIDS-KWINLKI--NELLVV 194 Query: 202 EFYSR 206 E+YSR Sbjct: 195 EYYSR 199 >gi|12330470|gb|AAG52772.1| ribosomal protein 4 [Buxbaumia aphylla] Length = 189 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A ++G T + E RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLKYVRIARGAKGSTGQISLQSSEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I +K K + +L+++ Sbjct: 87 GIAPTIPGARQLVNHRHILVNNNIVNIPSYRCKPQDFITIKNSQKSQTXITXNIELSQKY 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N I L + + LVVE+YSR Sbjct: 147 KIPNHLTFNSLEKKGLVNXI---LDRESIGLKINELLVVEYYSR 187 >gi|51458101|gb|AAU03402.1| ribosomal protein small subunit 4 [Asplenium fragile] Length = 181 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 14 QSTSKKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 72 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 73 VLFQLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSF 132 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 133 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 179 >gi|74272274|gb|AAT01827.2| small ribosomal protein 4 [Hymenophyton flabellatum] Length = 193 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD IV+R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIVFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+ +N V+I SY CK DVI + + K QL + ++ Sbjct: 88 GMAPTIPGARQLVNHRHIPINDDMVDIPSYNCKPEDVITTRNRRKSQLIITRNINLFQKQ 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + LVVE+YSR Sbjct: 148 KIPNHLTFDSTQFRGS---VNQMIDRECINLKINELLVVEYYSR 188 >gi|67035885|gb|AAY62869.1| small ribosomal protein subunit 4 [Pterogonidium pulchellum] Length = 190 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D+I +K + K + + + ++ Sbjct: 88 GMAATIPGARQLVNHRHILVNDCMVDIPSYRCKPQDLISIKNQLKSETIISKNIEFYQKS 147 Query: 164 -VPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLVNQIIDRESIGLK-------INELLVVEYYSR 188 >gi|328541150|gb|AEB21799.1| ribosomal protein S4 [Lepidozia ulothrix] Length = 200 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSNHNDRSAS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|118724417|gb|ABL10782.1| ribosomal protein small subunit 4 [Pellaea pectiniformis] Length = 192 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 25 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 84 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTS-CNAAKGKS 142 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + V ++ + V + LVVE+YSR Sbjct: 143 LGRNEVPDHLTLSISKTSEPTGLVNHMANRESVNLDI--NELLVVEYYSR 190 >gi|16565385|gb|AAL26207.1|AF313607_1 small ribosomal protein 4 [Lygodium lanceolatum] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 5/166 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG + R I + A ++ G T + LE RLD IV+R Sbjct: 31 KTSQFCIRLEAKQRLRFNYGSTECQLLRYI-RIARKAEGSTGQVSLQLLEMRLDNIVFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK---QKSKQLASVLEASQLA 160 PTI AARQ VNHRH+ VN R V+I SYRCK D+I K S L S+ S Sbjct: 90 GMAPTIPAARQLVNHRHIPVNNRIVDIPSYRCKPKDIIASKGLLTPSGTLKSIGTES-FK 148 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+++++ T + + + + LVVE+YSR Sbjct: 149 RNEIPDHLTLFAAEADQTKGSVNGIVNRESIHLNINELLVVEYYSR 194 >gi|157272431|gb|ABV27030.1| ribosomal protein small subunit 4-like protein [Salvinia minima] Length = 169 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 12/170 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T + LE RLD I++ Sbjct: 3 KISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIARKTKGSTGQVSLQLLEMRLDNIIFHL 61 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK-----SKQLASVLEASQ 158 PTI AARQ VNHRH+LVN R V++ SYRCK D I V+ + S + + ++E+S+ Sbjct: 62 GMAPTIPAARQSVNHRHILVNDRIVDVPSYRCKPRDTITVRNRPTSINSSKRSDIVESSR 121 Query: 159 LAERDVPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++++ + DN V ++ + + + VVE+YSR Sbjct: 122 --GNLIPDHLTLSFSEDNRPKGLVNQTATRESIDLNI--NELSVVEYYSR 167 >gi|75858248|gb|ABA28698.1| small ribosomal protein 4 [Wettsteinia schusteriana] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTFKSKSSYVDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+ VN V+I SY C+ G++I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHRHISVNNDIVDIPSYNCEPGNII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P +++ + ++ FV + + + + LV Sbjct: 127 TIKNKRKSQSIITKNINLFQNLKIPSHLTFDSIQLLG-FVNQTVNREWINLKI--NELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|26399168|sp|Q9FSA4|RR4_SPHDO RecName: Full=30S ribosomal protein S4, chloroplastic gi|10933877|emb|CAC14065.1| small ribosomal protein 4 [Sphaerocarpos donnellii] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ E RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLSEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 100 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFITIKNQQKSETIIS 150 >gi|121761845|gb|ABM65008.1| ribosomal protein S4 [Plagiomnium vesicatum] Length = 195 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMASTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|67035877|gb|AAY62865.1| small ribosomal protein subunit 4 [Aptychella proligera] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+H+LVN VNI SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHKHILVNDSIVNIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 148 Query: 164 -VPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y+ S+ V V R LK + LVVE+YSR Sbjct: 149 KIPNYLTYSSLEKKGFVNQIVDRELIGLK-------INELLVVEYYSR 189 >gi|63100975|gb|AAY33112.1| small ribosomal protein 4 [Pylaisia speciosa] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|99639985|emb|CAJ45134.1| putative ribosomal protein S4 gene [Cyathea arborea] Length = 198 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR+ Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 13 LTGKTSNPGETRTAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 66 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 67 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 126 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 127 DIITVRDRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIELNI- 185 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 186 -NELLVVEYYSR 196 >gi|86438876|emb|CAJ55417.1| small ribosomal protein 4 [Plagiochila ansata] Length = 164 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ FLE RLD ++R Sbjct: 9 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQFLEMRLDNTIFRL 67 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+ +N V+I SY C+ GD+I ++ K K +++ Sbjct: 68 GMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIITIRNKQKSQSAI 117 >gi|307697313|gb|ADN86111.1| ribosomal protein S4 [Chasmanthium latifolium] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 13/169 (7%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR V+I S+RCK D+I K Q+SK+L + +A Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIA 153 Query: 161 ERD---VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D +P++++V+ +I L + + LVVE+YSR Sbjct: 154 SSDPGKLPKHLTVDTLQYKGLVQKI---LDRKWVGLKINELLVVEYYSR 199 >gi|48527403|gb|AAT45834.1| small ribosomal protein 4 [Plagiochila poeltii] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSRTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGISPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|41323095|gb|AAR99777.1| small ribosomal protein 4 [Plagiochila carringtonii] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSRTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGISPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|18920797|gb|AAL82443.1| ribosomal protein system 4 [Taxiphyllum wissgrillii] Length = 197 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN ++I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCILDIPSYRCKPQDFITIKNQRK 139 >gi|7576625|gb|AAF63925.1| ribosomal protein system 4 [Curviramea mexicana] Length = 168 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 17/168 (10%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 10 SQYRIRLAEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGM 68 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAER 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K ++ +E SQ ++ Sbjct: 69 APTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFSQKSK- 127 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 128 -IPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 167 >gi|294337212|emb|CAQ52755.1| ribosomal protein S4 [Neckera complanata] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTSQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + +L ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|18027938|gb|AAL55893.1| ribosomal protein S4 [Pteris quadriaurita] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 I++R TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ + Sbjct: 83 IIFRLGMASTIPAARQLVNHRHILVNHRIVDIPSYRCKPRDIITIRNR 130 >gi|49182746|gb|AAT57835.1| small ribosomal protein [Lepidozia reptans] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 20 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 131 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|41323119|gb|AAR99789.1| small ribosomal protein 4 [Plagiochila magna] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + K ++V + + + +P +++ + + + + + + + LV Sbjct: 138 TIGNEQKSRSTVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|63101049|gb|AAY33149.1| small ribosomal protein 4 [Oedicladium doii] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 141 >gi|63100973|gb|AAY33111.1| small ribosomal protein 4 [Homomallium adnatum] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|52788783|gb|AAU87372.1| ribosomal protein small subunit 4 [Anemia mexicana] Length = 189 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L KQ+++ YG ++E++ + A +++G T L+ LE RLD Sbjct: 30 QSSSKKISQFCIRLETKQRLRFNYG-LTERQLLRYVRIARKAKGSTGQVLLQLLEMRLDN 88 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 I++++ TI AARQ VNHRH+LVN R V+I SYRCK D+I + + Sbjct: 89 IIFQSGMASTIPAARQLVNHRHILVNNRVVDIPSYRCKPTDIITTENQ 136 >gi|11467194|ref|NP_043027.1| ribosomal protein S4 [Zea mays] gi|48478773|ref|YP_024381.1| ribosomal protein S4 [Saccharum hybrid cultivar SP-80-3280] gi|50812530|ref|YP_054633.1| ribosomal protein S4 [Saccharum officinarum] gi|118614494|ref|YP_899409.1| ribosomal protein S4 [Sorghum bicolor] gi|133955|sp|P02355|RR4_MAIZE RecName: Full=30S ribosomal protein S4, chloroplastic; AltName: Full=Basic protein gi|52783337|sp|Q6L397|RR4_SACHY RecName: Full=30S ribosomal protein S4, chloroplastic gi|62287254|sp|Q6ENW1|RR4_SACOF RecName: Full=30S ribosomal protein S4, chloroplastic gi|125987753|sp|A1E9S6|RR4_SORBI RecName: Full=30S ribosomal protein S4, chloroplastic gi|12412|emb|CAA25754.1| unnamed protein product [Zea mays] gi|902224|emb|CAA60288.1| ribosomal protein S4 [Zea mays] gi|48478675|gb|AAT44695.1| ribosomal protein S4 [Saccharum hybrid cultivar SP80-3280] gi|49659514|dbj|BAD27295.1| ribosomal protein S4 [Saccharum hybrid cultivar NCo 310] gi|118201128|gb|ABK79498.1| ribosomal protein S4 [Sorghum bicolor] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR V+I S+RCK D+I K Q+SK+L AS Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNYIASSDP 157 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++V+ +I L + + LVVE+YSR Sbjct: 158 GK-LPKHLTVDTLQYKGLVKKI---LDRKWVGLKINELLVVEYYSR 199 >gi|48527401|gb|AAT45833.1| small ribosomal protein 4 [Plagiochila peculiaris] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTTNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 + KQKS+ + + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKQKSRSIVTK-NINSFQKLKIPSHLTFDLTQLQGS---VNQMINREWINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|67035883|gb|AAY62868.1| small ribosomal protein subunit 4 [Taxithelium planum] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K K K + + + +++ Sbjct: 97 GMAATIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNKRKSETIINKNIEFSQKY 156 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N ++ V R LK + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLINQIVDRELIGLK-------INELLVVEYYSR 197 >gi|548871|sp|P36465|RR4_MELAL RecName: Full=30S ribosomal protein S4, chloroplastic gi|439954|emb|CAA82444.1| ribosomal protein S4 [Melica altissima] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G L K+P + + H K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALLGLTRKTPKSGSNPKKKFHS----GKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG + R ++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYGLTERQLLRYVY-IAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L + +A D +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQ----NSIASSDPGKLPKHLTID 167 >gi|283549374|dbj|BAI66349.1| small ribosomal protein 4 [Mnioloma fuscum] Length = 188 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K+K SY + ++L KQK++ +YG ++E++ + A R + Sbjct: 12 PGLTNKILKTKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRVK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 VK+K K Sbjct: 131 TVKKKQK 137 >gi|228016343|gb|ACP51177.1| ribosomal protein S4 [Pinus taeda] Length = 201 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK+ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLHFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|118724477|gb|ABL10812.1| ribosomal protein small subunit 4 [Cheilanthes lendigera] Length = 181 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 5/128 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 22 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ ++ +V + + Sbjct: 81 NMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRTTSYNAV----KGGRDE 136 Query: 164 VPEYISVN 171 VP++++++ Sbjct: 137 VPDHLTLS 144 >gi|118626125|emb|CAL41759.1| small ribosomal protein 4 [Mesoptychia sahlbergii] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKALKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 127 TVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGS---VNQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|118626115|emb|CAL39357.1| small ribosomal protein 4 [Mesoptychia sahlbergii] gi|118626159|emb|CAL39377.1| small ribosomal protein 4 [Leiocolea rutheana] gi|118627550|emb|CAL39408.1| small ribosomal protein 4 [Leiocolea collaris] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKALKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGS---VNQTINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|118724337|gb|ABL10742.1| ribosomal protein small subunit 4 [Pellaea rotundifolia] Length = 195 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVLLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D++ ++ + +V + Sbjct: 87 VIFKLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDILTIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE+YSR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYYSR 193 >gi|110456648|gb|ABG74767.1| ribosomal protein S4 [Jasminum leratii] Length = 203 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 102/179 (56%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L + R K S + ++L KQK+ +YG + + + + A +++G T L+ L Sbjct: 29 GSDLRKKPRSRKKSQYRIRLEEKQKLCFHYG-LRDYQLLKYVRIAAKAKGPTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ VNHRH+LVNGR V+ SYRCK D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVNHRHILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTL 147 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S +++P ++++ H V + + D + V ++ N LVVE+YSR Sbjct: 148 IQNSLDSS--PHKELPNHLTL-HPFQYKGLV---NQIIDSKW-VGLKINELLVVEYYSR 199 >gi|46811030|gb|AAT01833.1| small ribosomal protein 4 [Moerckia blyttii] Length = 197 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD IV+R Sbjct: 36 KISQYRIRSEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIVFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-R 162 PTI ARQ VNHRH+L+N +V+I SY C+ DVI ++ + + + L++ + Sbjct: 95 GMAPTIPGARQLVNHRHILINDDTVDIPSYSCEPKDVITIRDRQESRLIIARNMDLSQGQ 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++++ + + + + + LVVE+YSR Sbjct: 155 KIPNHLTLDSTQFRGS---VDQVIDREWIDLKINELLVVEYYSR 195 >gi|294337256|emb|CAQ52777.1| ribosomal protein S4 [Pterobryopsis hoehnelii] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTSQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SY+CK D I +K + K Sbjct: 117 ILVNSCIVDIPSYQCKPQDFITIKNQRK 144 >gi|67036104|gb|AAY62978.1| small ribosomal protein subunit 4 [Hylocomiopsis cylindracarpa] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITTKNQRK 136 >gi|63101019|gb|AAY33134.1| small ribosomal protein 4 [Heterophyllium affine] Length = 190 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLINHRHLLVNDCIVDIPSYRCKPQDFITIKNQRK 132 >gi|62288929|sp|P69635|RR4_BRAPI RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288930|sp|P69636|RR4_BRASY RecName: Full=30S ribosomal protein S4, chloroplastic gi|439924|emb|CAA82429.1| ribosomal protein S4 [Brachypodium pinnatum] gi|439926|emb|CAA82430.1| ribosomal protein S4 [Brachypodium sylvaticum] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR VNI S+RCK D+I K Q + L + +A D +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITT--KDNQRSQSLVQNSIASSDPGKLPKHLTID 167 >gi|156619664|gb|ABU88446.1| small ribosomal protein 4 [Aneura sp. Wickett 472] gi|156619666|gb|ABU88447.1| small ribosomal protein 4 [Aneura sp. Wickett 473] Length = 172 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 6/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG + + +F A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYGLTERQLLKYVFT-ARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K ++ + L + Sbjct: 73 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREK--CRLVNMNSLQKPA 130 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + V + +I +D Y I + LVVE+YSR Sbjct: 131 IPNHLTFDSKEFVGSVQQIID--RDWIYLKINEL-LVVEYYSR 170 >gi|165968065|gb|ABY75858.1| ribosomal protein small subunit 4 [Asplenium milnei] gi|165968069|gb|ABY75860.1| ribosomal protein small subunit 4 [Asplenium surrogatum] Length = 188 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ S Sbjct: 80 VLFHLGMASTISAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRNKSL 139 Query: 159 LAERDVPEYIS 169 + ++ P +++ Sbjct: 140 VGDK-TPNHLT 149 >gi|294337144|emb|CAQ52722.1| ribosomal protein S4 [Heterocladium procurrens] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIASYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + I S + ++ LVVE+YSR Sbjct: 177 NQILDRESIGSKINEL---------LVVEYYSR 200 >gi|118411052|ref|YP_874447.1| 30S ribosomal protein S4 [Phaeodactylum tricornutum] gi|125987752|sp|A0T0H2|RR4_PHATC RecName: Full=30S ribosomal protein S4, chloroplastic gi|116739799|gb|ABK20670.1| 30S ribosomal protein S4 [Phaeodactylum tricornutum] Length = 203 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 16/212 (7%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQK 57 MS+ K KI RR+G L + + +N PG G K + +G++L KQK Sbjct: 1 MSRYRGPKLKISRRLGTLPGLTTKKSNKLNR----PGKDGNTDIGKKLTEYGVRLEEKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K YG ++EK+ KEA R +G T L+ LE RLDT+ + F ++ ARQ VN Sbjct: 57 LKFNYG-LTEKQLFRYVKEARRRQGVTGLILLQLLEMRLDTLCFTLGFAKSLAQARQLVN 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDN 174 H H+ +N + V+I S++C+ D+I +K+KS V ++ +Q+ R++P ++ + Sbjct: 116 HGHITINKKVVSIPSFQCRLNDIISIKEKSSSKTLVETNIKNNQV--REIPTHLRFDTVK 173 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A + DV + LV+E YSR Sbjct: 174 LEAIVLDYCDR-NDVSLQ--LDELLVIEHYSR 202 >gi|46811058|gb|AAT01847.1| small ribosomal protein 4 [Treubia lacunosa] Length = 197 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ A +++ Sbjct: 14 PGLTNKTLKSKLGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVGIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N ++V+I SY CK D+I Sbjct: 73 GSTGEVLLQLLEMRLDNIIFRLGLAFTIPGARQLVNHRHILINNKTVDIPSYHCKPKDLI 132 Query: 142 EVKQK-SKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K + QL + +P +++ + + +I +LK + Sbjct: 133 TIKNKPTSQLLITKNIDYSTKYKIPNHLTFDSVKKIGLVNQIIDREFINLK-------IN 185 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 186 ELLVVEYYSR 195 >gi|42405294|gb|AAS13473.1| rps4 small ribosomal protein [Brymela tutezona] Length = 194 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH++VN V+I SYRCK D I +K + K A + Sbjct: 92 GMAPTIPGARQLVNHRHIVVNDYIVDIPSYRCKPQDFITIKNQRKSEAII 141 >gi|548865|sp|P36456|RR4_ELEIN RecName: Full=30S ribosomal protein S4, chloroplastic gi|439938|emb|CAA82436.1| ribosomal protein S4 [Eleusine indica] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFYSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD IV+R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKKSTGQVLLQLLEMRLDNIVFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR V+I S+RCK D+I K Q+SK+L AS R +P++++V+ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASFDPGR-LPKHLTVD 167 >gi|294337202|emb|CAQ52795.1| ribosomal protein S4 [Macrothamnium hylocomioides] Length = 202 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ +E RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLIEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|99640006|emb|CAJ45138.1| putative ribosomal protein S4 gene [Dicksonia arborescens] gi|99640011|emb|CAJ45139.1| putative ribosomal protein S4 gene [Dicksonia gigantea] gi|99640020|emb|CAJ45141.1| putative ribosomal protein S4 gene [Dicksonia thyrsopteroides] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKASNPGETRVAA----DQSASKKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + + R ++P ++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGTNESSRGDEIPNHLTFSLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|7576591|gb|AAF63908.1| ribosomal protein system 4 [Lembophyllum divulsum] Length = 189 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|75858246|gb|ABA28697.1| small ribosomal protein 4 [Treubia lacunosa] Length = 191 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSYFG------------LQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y ++L KQK++ +YG ++E++ A +++ Sbjct: 8 PGLTNKTLKSKLGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVGIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+L+N ++V+I SY CK D+I Sbjct: 67 GSTGEVLLQLLEMRLDNIIFRLGLAFTIPGARQLVNHRHILINNKTVDIPSYHCKPKDLI 126 Query: 142 EVKQK-SKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K + QL + +P +++ + + +I +LK + Sbjct: 127 TIKNKPTSQLLITKNIDYSTKYKIPNHLTFDSVKKIGLVNQIIDREFINLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|62288931|sp|P69637|RR4_CALEP RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288942|sp|P69648|RR4_PHLPR RecName: Full=30S ribosomal protein S4, chloroplastic gi|439928|emb|CAA82432.1| ribosomal protein S4 [Calamagrostis epigeios] gi|439960|emb|CAA82447.1| ribosomal protein S4 [Phleum pratense] Length = 196 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGK-LPKHLTID 167 >gi|3098220|gb|AAC15558.1| small ribosomal protein 4 [Macromitrium levatum] Length = 199 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNYRMVDIPSYRCKPLDFITIKDRRK 141 >gi|52788789|gb|AAU87375.1| ribosomal protein small subunit 4 [Calochlaena villosa] gi|99639944|emb|CAJ45115.1| putative ribosomal protein S4 gene [Calochlaena villosa] Length = 200 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 14 LTGKASNPRETRVT----TDQSASRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH++VN R V++ SYRCK Sbjct: 69 KTKGSTGQVSLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRIVDVPSYRCKPK 128 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I ++ + + + R D+P+++ S+ N V ++ + + + Sbjct: 129 DIITIRNRPTSYNGLKSGINESSRGGDIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 187 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 188 -NELLVVEYYSR 198 >gi|294337258|emb|CAQ52778.1| ribosomal protein S4 [Rigodium implexum] Length = 202 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|12642240|gb|AAK00202.1| rps4 [Gigaspermum repens] Length = 194 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVSLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +++ Sbjct: 92 GMALTIPEARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKDRQKSQAMITKNIDFSQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N + L + + LVVE+YSR Sbjct: 152 KVPNHLTFNSLQKKGL---VNQXLDRESIGLKINELLVVEYYSR 192 >gi|42556428|gb|AAS19809.1| small ribosomal protein 4 [Hymenophyton flabellatum] Length = 191 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD IV+R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIVFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 PTI ARQ VNHRH+ +N V+I SY CK DVI + + K QL + ++ Sbjct: 88 GMAPTIPGARQLVNHRHIPINDDMVDIPSYNCKPEDVITTRNRRKSQLIITRNINLFQKQ 147 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + LVVE+YSR Sbjct: 148 KIPNHLTFDSTQFRGS---VNQMIDRECINLKINELLVVEYYSR 188 >gi|228016727|gb|ACP51555.1| ribosomal protein S4 [Pinus aristata] Length = 201 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + + R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQPRLRAIIKKNMDLFQRDKLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|328541158|gb|AEB21803.1| ribosomal protein S4 [Lepidozia sp. 2 Shaw 5789] Length = 195 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 20 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 131 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|320455042|dbj|BAJ65668.1| small ribosomal protein 4 [Metzgeria limbatosetosa] Length = 187 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 14/162 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTLKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 +K + + + ++E + L + +P ++ + ++ + R+ Sbjct: 131 AIKNQERYRSIIMERLNSLQKPGIPNHLVFDSTKLIGSVNRM 172 >gi|294337238|emb|CAQ52768.1| ribosomal protein S4 [Porotrichodendron robustum] Length = 202 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRK 144 >gi|294337158|emb|CAQ52729.1| ribosomal protein S4 [Homalia webbiana] gi|294337160|emb|CAQ52730.1| ribosomal protein S4 [Homalia webbiana] Length = 202 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMV 176 +LV+ V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVDDCIVDIPSYRCKPQDFITIKNQRKSETMISKNIEFYQKFKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|45271090|gb|AAS56929.1| ribosomal protein small subunit 4 [Asplenium scolopendrium] Length = 191 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 20/168 (11%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 33 FCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVIFHLGMAS 91 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ P++ Sbjct: 92 TIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNALRNKSLVGDK-TPDH 150 Query: 168 ISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++V+ N VA I ++ ++ LVVE+YSR Sbjct: 151 LTVSLSEGNRPTGLVNRVANRESINLNINEL---------LVVEYYSR 189 >gi|42794726|gb|AAS45758.1| Rps4 [Thibaudia pachyantha] Length = 211 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L+ KQK++ +YG ++E++ + ++ G T L+ L RLD I++R TI Sbjct: 48 IRLQEKQKLRFHYG-LTERQLLKYVRIPGKAXGSTGQVLLQLLXMRLDNILFRLGMASTI 106 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAER 162 ARQ VNHRHVLVNGR ++I YRCK D+I ++KS+ L L + + + Sbjct: 107 PGARQLVNHRHVLVNGRIIDIPRYRCKPRDIIXAREKSRALIQNSFQNLFDLPSRKRKRK 166 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I ++ K V + + LVVE+YSR Sbjct: 167 RVPYHLTXNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|18027954|gb|AAL55901.1| ribosomal protein S4 [Austrogramme decipiens] Length = 191 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 16/128 (12%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQK++ YG ++E++ + A Sbjct: 4 PGLTGKDKTSNSGDFRVASEQSASKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRCK Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNECIVDIPSYRCKPK 122 Query: 139 DVIEVKQK 146 D+I ++++ Sbjct: 123 DIITIRKR 130 >gi|51458168|gb|AAU03432.1| ribosomal protein small subunit 4 [Asplenium viellardii] Length = 188 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ + S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSCNALRKKSL 141 Query: 159 LAERDVPEYIS 169 + ++ P +++ Sbjct: 142 VGDK-TPNHLT 151 >gi|99639939|emb|CAJ45114.1| putative ribosomal protein S4 gene [Calochlaena dubia] Length = 195 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E++ + A Sbjct: 9 LTGKASNPRETRVT----TDQSASRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIAR 63 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH++VN R V++ SYRCK Sbjct: 64 KTKGSTGQVSLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRIVDVPSYRCKPK 123 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I ++ + + + R D+P+++ S+ N V ++ + + + Sbjct: 124 DIITIRNRPTSYNGLKSGINESSRGGDIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 182 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 183 -NELLVVEYYSR 193 >gi|67035937|gb|AAY62895.1| small ribosomal protein subunit 4 [Alsia californica] Length = 198 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 155 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|74273137|gb|ABA01268.1| ribosomal protein S4 [Passiflora suberosa] Length = 190 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 6/120 (5%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G G RKS+ + +L+ KQ+++ +YG ++E++ + A +++G T L+ L Sbjct: 21 GSAFLGSGRKSQ---YCRRLQEKQRLRFHYG-LTERQLLKYVRIATKAKGLTGQVLLQLL 76 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI ARQ VNHRH+LVN R V+I SYRCK D+I VK QKSK + Sbjct: 77 EMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDM 136 >gi|78102647|gb|ABB21537.1| small ribosomal protein 4 [Plagiochila dusenii] Length = 189 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLESKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCQPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|37992567|gb|AAR06462.1| small ribosomal protein 4 [Lembophyllum divulsum] Length = 195 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|254995547|emb|CAO82731.1| ribosomal protein S4 [Lycopodium nikoense] Length = 142 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 16/149 (10%) Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN Sbjct: 1 LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVN 60 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYI---SVNHDNMVATFV 180 R++N+ SYRCK D+I + +S+ A + + ++ ++ +P ++ S+ + +V + Sbjct: 61 NRAINVPSYRCKPKDIITARDRSESQAIIAKNNEFSQTYKIPNHLTLHSLQNKGLVNKII 120 Query: 181 ---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S++ ++ LVVE+YSR Sbjct: 121 DRESIDSNINEL---------LVVEYYSR 140 >gi|222103444|gb|ACM44251.1| small ribosomal protein subunit 4 [Haplocladium microphyllum] Length = 202 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|18920787|gb|AAL82438.1| ribosomal protein system 4 [Rhizofabronia perpilosa] Length = 197 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + Sbjct: 95 GMAPTIPGARQLVNHRHILVNDFIVDIPSYRCKPQDFITIKNQ 137 >gi|48527419|gb|AAT45842.1| small ribosomal protein 4 [Plagiochila spinulosa] Length = 202 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 TIRNKQK 144 >gi|18027958|gb|AAL55903.1| ribosomal protein S4 [Pterozonium reniforme] gi|18027960|gb|AAL55904.1| ribosomal protein S4 [Pterozonium reniforme] Length = 191 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L KQK++ YG ++E++ + A Sbjct: 4 PGLTGKDKTSNSGDFRVASEQSASKKISQFCVRLETKQKLRFNYG-LTERQLLKYVRIAR 62 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRCK Sbjct: 63 KTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNECIVDIPSYRCKPK 122 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 D+I ++ + + + + +P++++++ + + + Sbjct: 123 DIITIRNRPI-FHNAAKDESIGRDGIPDHLTLSFSKAGEQVGLVNHIASRESVDLDINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|51458178|gb|AAU03437.1| ribosomal protein small subunit 4 [Asplenium tenerum] Length = 189 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 22 QSTSRKXSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L Sbjct: 81 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLIAVRNRPTSF-NALRNKS 139 Query: 159 LAERDVPEYIS 169 L P++++ Sbjct: 140 LEGDKTPDHLT 150 >gi|26399104|sp|P59142|RR4_HYPCP RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504371|emb|CAC80630.1| small ribosomal protein 4 [Hypnum cupressiforme] Length = 202 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD + +R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVTFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|108861110|gb|ABG21427.1| ribosomal protein small subunit 4 [Marsilea polycarpa] Length = 156 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 75/121 (61%), Gaps = 7/121 (5%) Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 AKQ+++ YG ++E++ + A +++G T L+ LE RLD IV++ PTI AAR Sbjct: 1 AKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDNIVFQLGLAPTIPAAR 59 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVLEASQLAERDVPEYIS 169 Q VNHRH+LVN R V++ SYRC+ D+I V+ + V E+S+ ++P+++S Sbjct: 60 QLVNHRHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVFESSR--SNEIPDHLS 117 Query: 170 V 170 + Sbjct: 118 L 118 >gi|328541156|gb|AEB21802.1| ribosomal protein S4 [Lepidozia fauriana] Length = 195 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 20 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + +P +++ + + + I ++ + + LV Sbjct: 131 TIRNKQKSRSIITKNVNFFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|157689584|gb|ABV65348.1| ribosomal protein S4 [Wendtia gracilis] Length = 197 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K SY L+L KQK++ +YG ++E++ + + A +S+G+T L+ + RLD I+++ Sbjct: 1 KKSYL-LRLEEKQKLRFHYG-LTERQLLNYVRIAGKSKGETGQVLLQLIAMRLDNILFQL 58 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVNGR V+I SYRCK D+I VK K Sbjct: 59 GMASTIPQARQLVNHRHILVNGRLVDIPSYRCKPRDIIIVKDDKK 103 >gi|6002067|emb|CAA58941.1| ribosomal protein S4 [Nardus stricta] Length = 196 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L AS + +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNSVASSDPGK-LPKHLTID 167 >gi|7576517|gb|AAF63871.1| ribosomal protein system 4 [Neckera pennata] Length = 190 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|67035939|gb|AAY62896.1| small ribosomal protein subunit 4 [Heterocladium dimorphum] Length = 199 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|42794664|gb|AAS45729.1| Rps4 [Macleania insignis] Length = 142 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 65/98 (66%), Gaps = 1/98 (1%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 46 YHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAS 104 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++ Sbjct: 105 TIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARE 142 >gi|48527393|gb|AAT45829.1| small ribosomal protein 4 [Plagiochila ovata] Length = 202 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A + + Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKVK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K +++ + + + +P +++ + + + +I + +LK + Sbjct: 138 TIRNKQKSQSTITKNINSFQKLKIPSHLNFDSTQLRGSVNQIINREWINLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|48527357|gb|AAT45811.1| small ribosomal protein 4 [Plagiochila banksiana] Length = 202 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTVKSKSSYXDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSLTIPGARQLVNHRHISINNNIVDIPSYNCESGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K +++ + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSAITKNINSFQKLKIPSHLTFDSPQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|227345115|gb|ACP28110.1| small ribosomal protein 4 [Castanoclobos julaceus] Length = 191 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GDVI Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNDIVDIPSYNCESGDVI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ + +++ + + + I ++ + + LV Sbjct: 127 TVRNKQKSQSIITKNINLFQKLKLSNHLTFDSTQLCGS---INQTINRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|78102685|gb|ABB21556.1| small ribosomal protein 4 [Plagiochila lunata] Length = 164 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|37683574|gb|AAQ98838.1| small ribosomal protein 4 [Pogonatum brachyphyllum] Length = 171 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 10 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRL 68 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL-ASVLEASQLA 160 TI ARQ VNH+H+LVN VNI SYRCK D I +K Q+S+ + A ++ SQ Sbjct: 69 GMAQTIPGARQLVNHKHILVNDHIVNIPSYRCKPQDFITIKNRQESQDISAKNIDFSQ-- 126 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ N +I L + + LVVE+YSR Sbjct: 127 KYKIPNHLTFNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 169 >gi|6002094|emb|CAA58956.1| ribosomal protein S4 [Zizania latifolia] Length = 196 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++++ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTID 167 >gi|52788815|gb|AAU87381.1| ribosomal protein small subunit 4 [Saccoloma inaequale] Length = 193 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 20/180 (11%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 ++ Q K S F ++L AKQ+++ YG ++E++ + + A +++G T + LE R Sbjct: 23 VNDQSGSKKISQFCVRLEAKQRLRFSYG-LTERQPLNYVRIARKTKGSTGQVSLQLLEMR 81 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD +++ TI AARQ VNHRH+LVN R V+I SYRC+ D+I V+ + ++VL Sbjct: 82 LDNVIFHPGVASTIPAARQLVNHRHILVNNRIVDIPSYRCEPKDIITVRNRPTS-SNVLR 140 Query: 156 ASQLAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++++ N +A + ++ ++ LVVE+YSR Sbjct: 141 NASFGRDKIPDHLTLSLTEGSRPTGLVNRIANRESVDLNINEL---------LVVEYYSR 191 >gi|548870|sp|P36464|RR4_LYGSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|439952|emb|CAA82443.1| ribosomal protein S4 [Lygeum spartum] Length = 196 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 10/134 (7%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ + A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVQIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR VNI S+RCK D+I K Q+SK L + +A Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQ----NSIA 153 Query: 161 ERD---VPEYISVN 171 D +P++++++ Sbjct: 154 SSDPGKLPKHLTID 167 >gi|99640071|emb|CAJ45151.1| putative ribosomal protein S4 gene [Cyathea gibbosa] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR+ Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRTAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 128 DIITVRDRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVDRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|7576575|gb|AAF63900.1| ribosomal protein system 4 [Isopterygium tenerum] Length = 190 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D+I +K + K + + + ++ Sbjct: 89 GMAATIPGARQLVNHRHILVNDCIVDIPSYRCKPHDLITIKNQRKSETIISKNIEFYQKS 148 Query: 164 -VPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYNSLEKKGLVNQIIDRESIGLK-------INELLVVEYYSR 189 >gi|311901164|gb|ADQ13132.1| small ribosomal protein 4 [Nephrolepis abrupta] gi|311901166|gb|ADQ13133.1| small ribosomal protein 4 [Nephrolepis abrupta] Length = 178 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + S L + Sbjct: 75 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-SALRVKSPGKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|296126890|ref|YP_003634142.1| ribosomal protein S4 [Brachyspira murdochii DSM 12563] gi|296018706|gb|ADG71943.1| ribosomal protein S4 [Brachyspira murdochii DSM 12563] Length = 208 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 7/169 (4%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 R+ + S +G+Q+R KQK+K+ YG + EK+FR+ + EA R G + NL+ LE RLD + Sbjct: 45 RKMKQLSEYGIQMREKQKVKRIYG-VLEKQFRNYYHEAIRVAGVSGENLLRLLELRLDNV 103 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQ 158 VYR F + ARQFV H + VNG+ ++I SY K GD I + + V A Sbjct: 104 VYRLGFAKSRNQARQFVAHGFISVNGKKMSIPSYSIKVGDKISFTENGNAIGEVKAIAEG 163 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKD-VPYPVIMQPNLVVEFYSR 206 L VP ++S++ + V +P ++D + YP+ Q L++E+YS+ Sbjct: 164 LKSEYVPAWLSLDLSSKTGEIVTLP--IRDHIEYPINEQ--LIIEYYSK 208 >gi|145408427|ref|NP_817246.2| ribosomal protein S4 [Pinus koraiensis] gi|324986396|ref|YP_004276268.1| ribosomal protein S4 [Pinus lambertiana] gi|148887422|sp|Q85WX8|RR4_PINKO RecName: Full=30S ribosomal protein S4, chloroplastic gi|145048679|gb|AAO74091.2| ribosomal protein S4 [Pinus koraiensis] gi|228016152|gb|ACP50989.1| ribosomal protein S4 [Pinus sibirica] gi|228016790|gb|ACP51617.1| ribosomal protein S4 [Pinus armandii] gi|228017160|gb|ACP51981.1| ribosomal protein S4 [Pinus cembra] gi|323514245|gb|ADX89792.1| ribosomal protein S4 [Pinus lambertiana] Length = 203 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + R++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 101 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRD 160 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 161 KLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELLVVEYYSR 201 >gi|134274697|emb|CAL30290.1| small ribosomal protein 4 [Marchesinia brachiata] Length = 184 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 11/152 (7%) Query: 34 PGLHGQRRKSKP---------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 PGL G+ K+K S + ++L KQK++ +YG ++E++ + A +++G T Sbjct: 9 PGLTGKISKTKIDRSALNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGST 67 Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L+ LE RLD ++ TI +ARQ VNHRH+ +N VNI SY CK GD+I +K Sbjct: 68 GQVLLQLLEMRLDNTIFCLGMATTIPSARQLVNHRHIFINDYIVNIPSYNCKPGDIITIK 127 Query: 145 QKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 K K + + + L+++ P +++ + + Sbjct: 128 NKEKSQSIISKNINLSQKLQTPNHLTFDSTQL 159 >gi|99640025|emb|CAJ45142.1| putative ribosomal protein S4 gene [Hymenophyllopsis dejecta] Length = 185 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 6/129 (4%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR+ Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 11 LTGKTSNPGKTRTAAD----QSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 65 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 124 Query: 139 DVIEVKQKS 147 D+I V+ ++ Sbjct: 125 DIITVRDRA 133 >gi|80974178|gb|ABB53782.1| small ribosomal subunit protein 4 [Ptychomniella ptychocarpa] Length = 198 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + Sbjct: 96 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFIIIKNQ 138 >gi|67036112|gb|AAY62982.1| small ribosomal protein subunit 4 [Mittenothamnium reptans] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLXLPETRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQQK 141 >gi|320455038|dbj|BAJ65666.1| small ribosomal protein 4 [Metzgeria caledonica] Length = 185 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 14/158 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTNKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY CK GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCKLGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 +K + + ++++E ++ +P +++ + + + Sbjct: 131 TIKNQKRNRSNIMETLNSVQKPGIPNHLAFDSTKFIGS 168 >gi|118724339|gb|ABL10743.1| ribosomal protein small subunit 4 [Pellaea falcata] Length = 184 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 17 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVLLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D++ ++ + +V + Sbjct: 76 VIFKLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDILTIRNRPTSYNAV-KVES 134 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE+YSR Sbjct: 135 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYYSR 182 >gi|290790713|gb|ADD62971.1| ribosomal protein S4 [Oryza australiensis] Length = 201 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVNHDNM 175 + VNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++++ Sbjct: 116 IFVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIASSDPGKLPKHLTIDTLQY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 172 KGLVKKI---LDRKWVGLKINELLVVEYYSR 199 >gi|310707171|gb|ADP08971.1| Rps4 [Saccoloma inaequale] Length = 189 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 20/180 (11%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 ++ Q K S F ++L AKQ+++ YG ++E++ + + A +++G T + LE R Sbjct: 19 VNDQSGSKKISQFCVRLEAKQRLRFSYG-LTERQPLNYVRIARKTKGSTGQVSLQLLEMR 77 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD +++ TI AARQ VNHRH+LVN R V+I SYRC+ D+I V+ + ++VL Sbjct: 78 LDNVIFHPGVASTIPAARQLVNHRHILVNNRIVDIPSYRCEPKDIITVRNRPTS-SNVLR 136 Query: 156 ASQLAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++++ N +A + ++ ++ LVVE+YSR Sbjct: 137 NASFGRDKIPDHLTLSLTEGSRPTGLVNRIANRESVDLNINEL---------LVVEYYSR 187 >gi|41323127|gb|AAR99793.1| small ribosomal protein 4 [Plagiochila raddiana] Length = 202 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 27/191 (14%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+LVN V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHILVNNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIM 195 + KQKS+ + + + + +P +++ + + + ++ + +LK + Sbjct: 138 TIGNKQKSRVIVTK-NINSFQKLKIPNHLTFDSTQLRGSVNQMINREWINLK-------I 189 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 190 NELLVVEYYSR 200 >gi|18027992|gb|AAL55920.1| ribosomal protein S4 [Eriosorus setulosus] Length = 191 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 6 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 60 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 61 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 120 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V +S + V + Sbjct: 121 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESVDLEI- 178 Query: 195 MQPNLVVEFYSR 206 V EFYSR Sbjct: 179 -NELFVGEFYSR 189 >gi|37992667|gb|AAR06512.1| small ribosomal protein 4 [Ptychomnion ptychocarpon] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFIIIKNQ 134 >gi|50235350|gb|AAT70708.1| Rps4 [Brachythecium percurrens] gi|50235366|gb|AAT70716.1| Rps4 [Brachythecium percurrens] Length = 195 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFHQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + +LVVE+YSR Sbjct: 153 KIPNHLTYSFLEKKGLVTQI---LDRESIGLKINESLVVEYYSR 193 >gi|3098254|gb|AAC15575.1| small ribosomal protein 4 [Bryolawtonia vancouveriensis] gi|67036078|gb|AAY62965.1| small ribosomal protein subunit 4 [Dolichomitriopsis diversiformis] Length = 199 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 197 >gi|121761839|gb|ABM65005.1| ribosomal protein S4 [Plagiomnium vesicatum] Length = 195 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN R V+I SYRCK D I +K + K + + ++ Sbjct: 93 GMASTIPGARQLVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKY 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLNKKGLVNQI---LDRDSIDLKINELLVVEYYSR 193 >gi|41323085|gb|AAR99772.1| small ribosomal protein 4 [Plagiochila adiantoides] Length = 202 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K + + + L ++ +P ++ + + + + + + + LV Sbjct: 138 TIGNKQKSRSIITKNINLFQKLKIPSHLIFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|170516213|gb|ACB15108.1| small ribosomal protein 4 [Widdringtonia nodiflora] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + ++L+ KQ+++ +Y + E++ + A R+ G T L+ LE RLD I++R Sbjct: 34 KPSKYPVRLKEKQRLRFHY-RLPERQLLQYVRIARRAEGSTGQVLLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LVN R V+I SYRCK D I +K+K Sbjct: 93 GMALTIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKEKQ 136 >gi|99639971|emb|CAJ45131.1| putative ribosomal protein S4 gene [Cyathea grandifolia] gi|99639990|emb|CAJ45135.1| putative ribosomal protein S4 gene [Cyathea divergens] Length = 196 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR+ Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 11 LTGKTSNPGETRTAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 65 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 124 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 125 DIITVRDRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVDRIANRESIDLNI- 183 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 184 -NELLVVEYYSR 194 >gi|7576609|gb|AAF63917.1| ribosomal protein system 4 [Taxithelium planum] Length = 190 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K K K + + + +++ Sbjct: 89 GMAATIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNKRKSETIINKNIEFSQKY 148 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N ++ V R LK + LVVE+YSR Sbjct: 149 KIPNHLTYNSLEKKGLINQIVDRELIGLK-------INELLVVEYYSR 189 >gi|50235332|gb|AAT70699.1| Rps4 [Eurhynchium fuegianum] Length = 195 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLINHRHILVNYCIVDIPSYRCKPQDFITIKNQRK 137 >gi|118724393|gb|ABL10770.1| ribosomal protein small subunit 4 [Paraceterach muelleri] Length = 184 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 7/172 (4%) Query: 38 GQRRKSKPSY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 G + SK + F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RL Sbjct: 15 GDQSASKKIFQFCVRLEAKQRLRLNYG-LTERQLLKYIRIAKKTRGSTGQVLLQLLEMRL 73 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 74 DNVIFKLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KV 132 Query: 157 SQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE+YSR Sbjct: 133 ESFGRDEVPDHLTLSISKTNEPTGLVNYMANRESVNLDI--NELLVVEYYSR 182 >gi|195984190|gb|ACG63785.1| rps4 [Oedipodiella australis var. catalaunica] Length = 196 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +++ Sbjct: 94 GMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAIITKNIDFSQKS 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 154 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 194 >gi|134274701|emb|CAL30292.1| small ribosomal protein 4 [Cheilolejeunea trifaria] Length = 186 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFCL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 87 GMATTIPNARQLVNHRHIFINDYIVNIPSYNCKPGDIITIKNKEKSQSIINKNMNLSQKL 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 VP +++ + + + +++ + + LVVE+YS Sbjct: 147 QVPNHLTFDSTQLRGL---VNQTIRREWIDLKINELLVVEYYS 186 >gi|99640001|emb|CAJ45137.1| putative ribosomal protein S4 gene [Cyathea speciosa] Length = 198 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR+ Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 13 LTGKTSNPGETRTAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 66 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 67 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 126 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 127 DIITVRDRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVDRIANRESIDLNI- 185 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 186 -NELLVVEYYSR 196 >gi|37992615|gb|AAR06486.1| small ribosomal protein 4 [Orthostichidium pentagonum] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNSCIVDIPSYQCKPQDFITIKNQRK 136 >gi|77862513|gb|ABB04529.1| small ribosomal protein 4 [Athalamia hyalina] Length = 200 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD IV+R Sbjct: 39 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ +NH H+L+N V+I SY CK DVI +K + K + + + + ++ Sbjct: 98 GMAPTIPGARQLINHPHILINNNMVDIPSYNCKPKDVISIKDRPKSQSIITKNLNYFQKQ 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ + + + + + D + + ++ N LVVE+YSR Sbjct: 158 KIPNHLTFD----LMQVKGLVNQIIDREW-IFLKINELLVVEYYSR 198 >gi|50299387|gb|AAT73598.1| small ribosomal protein 4 [Plagiochila renitens] Length = 188 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNHDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|49182716|gb|AAT57820.1| small ribosomal protein [Haplomitrium hookeri] Length = 195 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + SKP Y + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTNKVLGSKPGYTDQLISNRKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T H L LE RLD +++R TI ARQ VNHRH+L+N +V+I Y CK D+I Sbjct: 71 GSTGHVLSQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILINDEAVDIPGYNCKPRDII 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K S+ + + ++R P ++ + + +I SLK + Sbjct: 131 TLKNTSESRSGSAKDIDFSKRSRTPNHLVFDSSRGMGFVNQIIDREWISLK-------IN 183 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 184 ELLVVEYYSR 193 >gi|18920795|gb|AAL82442.1| ribosomal protein system 4 [Taxiphyllum taxirameum] Length = 196 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G K+P R ++ K S + ++L KQK++ +YG I+E++ Sbjct: 4 RIIRRLGTLPGLTNKTP---RLKSSSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 59 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN V+ Sbjct: 60 LLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNDCIVD 119 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMVATFV-RIPS 184 I SYRCK D I +K + K + E + ++ +P Y S+ +V + R Sbjct: 120 IPSYRCKPQDFITIKNQRKSETIINENIEFYQKYKIPNHLTYSSLEKKGLVNQILDRESI 179 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 LK + LVVE+YSR Sbjct: 180 GLK-------INELLVVEYYSR 194 >gi|78102661|gb|ABB21544.1| small ribosomal protein 4 [Plagiochila fruticella] Length = 189 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH+H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHKHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|37992613|gb|AAR06485.1| small ribosomal protein 4 [Orthostichidium involutifolium] Length = 192 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNSCIVDIPSYQCKPQDFITIKNQRK 134 >gi|37992723|gb|AAR06540.1| small ribosomal protein 4 [Weymouthia mollis] Length = 192 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N + +L + + LVVE+YSR Sbjct: 150 KIPNHLTYNSLEKKGL---VNQTLDRESIGLKINELLVVEYYSR 190 >gi|67035951|gb|AAY62902.1| small ribosomal protein subunit 4 [Neckera pennata] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|328541120|gb|AEB21784.1| ribosomal protein S4 [Psiloclada clandestina] Length = 198 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 15 PGLTNRILESKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 74 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHIPINNNIVDIPSYNCEPGDII 133 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L + +P +++ + + + I ++ + + LV Sbjct: 134 TIKDKQKSQSVITRNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 190 Query: 201 VEFYSR 206 VE+YSR Sbjct: 191 VEYYSR 196 >gi|37992569|gb|AAR06463.1| small ribosomal protein 4 [Lembophyllum divulsum] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|7576547|gb|AAF63886.1| ribosomal protein system 4 [Anomodon rugelii] Length = 190 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQSLEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|66866216|gb|AAY57780.1| small ribosomal protein 4 [Bryobrothera crenulata] Length = 208 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE RLD +++R Sbjct: 44 SQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGM 102 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 103 APTIPGARQLVNHRHILVNDFIVDIPSYRCKPQDFITIKNQQK 145 >gi|67036018|gb|AAY62935.1| small ribosomal protein subunit 4 [Eurhynchiella acanthophylla] Length = 194 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLINHRHILVNYCIVDIPSYRCKPQDFITIKNQRK 136 >gi|67035801|gb|AAY62831.1| small ribosomal protein subunit 4 [Neolindbergia cladomnioides] Length = 198 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 140 >gi|228016595|gb|ACP51425.1| ribosomal protein S4 [Abies firma] Length = 201 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 158 Query: 164 V-PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ N +I S K + + LVVE+YSR Sbjct: 159 ILPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 199 >gi|269308862|gb|ACZ34322.1| ribosomal protein small subunit 4 [Oedipodiella australis] Length = 195 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +++ Sbjct: 93 GMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAIITKNIDFSQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 153 KVPNHLTFNSLQKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|219973344|gb|ACL68558.1| ribosomal protein small subunit 4 [Marsilea macropoda] Length = 169 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 7/132 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + +L AKQ+++ YG ++E++ + A +++G T L+ LE RLD IV++ Sbjct: 4 KISQYCGRLEAKQRLRFNYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDNIVFQL 62 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL----ASVLEASQL 159 PTI AARQ VNH H+LVN R V++ SYRC+ D+I V+ + V E+S+ Sbjct: 63 GLAPTIPAARQLVNHXHILVNDRIVDVPSYRCEPQDIITVRNRPTSYNVLKGGVFESSR- 121 Query: 160 AERDVPEYISVN 171 ++P+++S++ Sbjct: 122 -SNEIPDHLSLS 132 >gi|67036080|gb|AAY62966.1| small ribosomal protein subunit 4 [Camptochaete arbuscula] Length = 198 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|328541134|gb|AEB21791.1| ribosomal protein S4 [Telaranea patentissima] Length = 200 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDVI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + + +++ + + + I ++ + + LV Sbjct: 135 TIKDKQKSRSIITKNINLFQNLKIASHLTFDSIKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|296120999|ref|YP_003628777.1| ribosomal protein S4 [Planctomyces limnophilus DSM 3776] gi|296013339|gb|ADG66578.1| ribosomal protein S4 [Planctomyces limnophilus DSM 3776] Length = 202 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 14/211 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS--PVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + K +++RR+G ++ + + R+ PG+ +RRK S +G KQK+ Sbjct: 1 MGRYTGPKGRVNRRLGAIVFENAGAIRALERRNTPPGMAERRRKL--SAYGTAHFEKQKI 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YYG + E + R F+ A +G+T L+ E RLD IV RA F + ARQ + H Sbjct: 59 KYYYG-LREAQLRKYFEMARAKKGNTGEFLLLTCERRLDNIVRRAGFTKSRLQARQGIVH 117 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKS--KQL-ASVLEASQLAERDVPEYISVNHDNM 175 RH +NG +V+I S K GDVI ++ + K+L A ++E++ L D +++V+ Sbjct: 118 RHFQLNGHTVDIPSILVKPGDVITLRNRPNVKELYADLVESASLPSVD---WLAVDRSGF 174 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++ D+ PV + LVV SR Sbjct: 175 EIRVMALPTA-TDISLPV--EIGLVVALMSR 202 >gi|37992585|gb|AAR06471.1| small ribosomal protein 4 [Lindigia debilis] Length = 173 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 12 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 71 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRK 115 >gi|294337252|emb|CAQ52775.1| ribosomal protein S4 [Pseudoleskeopsis zippelii] Length = 202 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKAPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRC D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCXPQDFITIKNQRK 144 >gi|51458105|gb|AAU03404.1| ribosomal protein small subunit 4 [Asplenium aegaeum] Length = 192 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 25 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 84 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRDKSL 143 Query: 159 LAERDVPEYISVN---------HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 144 VGDK-TPDHLTVSLLEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 190 >gi|311901204|gb|ADQ13152.1| small ribosomal protein 4 [Nephrolepis radicans] Length = 178 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKSPRKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|42556458|gb|AAS19824.1| small ribosomal protein 4 [Mastigophora woodsii] gi|118626065|emb|CAL39337.1| small ribosomal protein 4 [Mastigophora woodsii] Length = 191 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + +I + + + LV Sbjct: 127 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGSINQI---INREWIHLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67035803|gb|AAY62832.1| small ribosomal protein subunit 4 [Orthostichidium involutifolium] Length = 199 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNSCIVDIPSYQCKPQDFITIKNQRK 141 >gi|67035955|gb|AAY62904.1| small ribosomal protein subunit 4 [Handeliobryum sikkimense] Length = 199 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDCITIKDQQKSETIIS 147 >gi|63101057|gb|AAY33153.1| small ribosomal protein 4 [Symphysodon longicuspis] Length = 194 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRKSETMISKNIEFYQKY 151 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ ++ +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYSYLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|311901196|gb|ADQ13148.1| small ribosomal protein 4 [Nephrolepis hirsutula] Length = 178 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKSPRKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|165935729|gb|ABY75161.1| ribosomal protein S4 [Asplenium flaccidum] gi|165935733|gb|ABY75163.1| ribosomal protein S4 [Asplenium shuttleworthianum] gi|165968067|gb|ABY75859.1| ribosomal protein small subunit 4 [Asplenium difforme] Length = 188 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 2/126 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD +++ Sbjct: 26 KISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDNVLFHL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ S + ++ Sbjct: 85 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRNKSLVGDK- 143 Query: 164 VPEYIS 169 P +++ Sbjct: 144 TPNHLT 149 >gi|37992719|gb|AAR06538.1| small ribosomal protein 4 [Weymouthia mollis] Length = 190 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 147 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 148 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 188 >gi|78102629|gb|ABB21528.1| small ribosomal protein 4 [Plagiochila bicornuta] Length = 172 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 14/158 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKALKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFHLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVAT 178 +K K K + V + + + +P +++ + + A+ Sbjct: 131 TIKNKQKSQSIVAKNINSFQKLKIPSHLTFDSTQLRAS 168 >gi|49182789|gb|AAT57856.1| small ribosomal protein [Radula perrottetii] Length = 195 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGE-----NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 KI RR+G+ N +PKS RS K S + ++L KQK++ +YG Sbjct: 3 KIIRRLGDLPGLSNKTLKPKSSYIDRSVS--------NKKISQYRIRLEEKQKLRFHYG- 53 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++EK+ + A ++G T L+ LE RLD ++ PTI ARQ VNH+H+ +N Sbjct: 54 LTEKQLLKYVRIARNAKGSTGQILLQLLEMRLDNTIFCLGMAPTIPGARQLVNHKHIFIN 113 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF-VRI 182 +V+I SY C+ GD+I ++ K + + + + + ++P ++ + + RI Sbjct: 114 NSTVDIPSYNCELGDIITIRNTHKSKSIITKNINSFRKLEIPNHLIFDSTQLRGLINQRI 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + + + LVVE+YSR Sbjct: 174 PCNWISLK----INELLVVEYYSR 193 >gi|32401781|gb|AAP80879.1| small ribosomal protein 4 [Abies fraseri] Length = 189 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 87 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 146 Query: 164 V-PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ N +I S K + + LVVE+YSR Sbjct: 147 ILPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 187 >gi|16930546|gb|AAL31954.1| ribosomal protein small subunit 4 [Stenochlaena milnei] Length = 177 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 6/159 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 L+L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ TI Sbjct: 21 LRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHLGMASTI 79 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY-- 167 AARQ VNHRH+LVN R V+I SYRCK D+I ++ +S + L P++ Sbjct: 80 PAARQLVNHRHILVNNRIVDIPSYRCKPKDIITLRNQST-FCNALRGESPGGGKTPDHLT 138 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S++ N V ++ + V + LVVE+YSR Sbjct: 139 VSLSEGNRPTGVVNRIANRESVNLNI--NELLVVEYYSR 175 >gi|227439309|gb|ACP31331.1| ribosomal protein small subunit 4 [Pteridium esculentum] Length = 190 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ + ++E++ + A ++RG T L LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLR-FNSGLTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 142 LGEK-IPDHLTLSLSEGSKPTGLVNRIASRESVNLNI--NELLVVEYYSR 188 >gi|41323087|gb|AAR99773.1| small ribosomal protein 4 [Plagiochila aerea] Length = 202 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLESKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +YR PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIYRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIVT 150 >gi|290487078|gb|ADD29923.1| ribosomal protein S4 [Phoradendron serotinum] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 20/213 (9%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 MS+ + K RR+G L G RP+S + R+ P G++R S++ ++L KQ Sbjct: 1 MSRYRGPRFKKIRRLGA-LPGLTNKRPRSGSDIRNPFPS--GKKR----SHYRIRLEEKQ 53 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++ +Y ++E++ + A +++G + L+ LE RLD I++R TI ARQ + Sbjct: 54 KLRFHYC-LTERQLLKYVRIAGKAKGASGRVLLQLLEMRLDNILFRLGMTSTISGARQLI 112 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSKQLASVLEASQLAERDVPEYISVNHDNM 175 NHRH+LVN R V+I SYRCK ++I + +K Q+ + +++P+++++ H Sbjct: 113 NHRHILVNERIVDIPSYRCKPQEIITARNEKKSQVLIQNHVDSSSHKELPKHLTL-HPFQ 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 FV + + D + V ++ N LVVE+YSR Sbjct: 172 YKGFV---NQIIDSQW-VGLKINELLVVEYYSR 200 >gi|222103540|gb|ACM44299.1| small ribosomal protein subunit 4 [Climacium japonicum] Length = 204 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 43 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 101 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + +++ Sbjct: 102 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFSQKS 161 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 162 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 202 >gi|56070061|gb|AAV70691.1| ribosomal protein 4 [Gnetum gnemon] Length = 160 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 7/156 (4%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQK++ ++G ++E++ R + A + +G T L+ L+ RLD I+Y+ TI Sbjct: 9 LQEKQKIRFHFG-LTERQLRQYVQIAQKVQGSTGQVLLQLLKMRLDNILYQLGLAGTIPG 67 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVL--EASQLAERDVPEYI 168 ARQ VNHRH+LVN VNI SYRCK DVI +K K+ QL +++ ++ E+ +P ++ Sbjct: 68 ARQLVNHRHILVNDYVVNIPSYRCKPQDVITIKGKNPDQLKTLITRNRNKAREKKIPYHL 127 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 +++ +I KD+ + + LV+E+Y Sbjct: 128 TLDLSQNKGIVNKIIDR-KDIQLNI--KEMLVIEYY 160 >gi|118626087|emb|CAL39347.1| small ribosomal protein 4 [Cephalozia crassifolia] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+ +N ++I SY C GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHISMNNDMIDIPSYNCDPGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 TMRNKRK 144 >gi|117306732|emb|CAH73334.1| ribosomal protein S4 [Ptychomnion ptychocarpon] Length = 183 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + Sbjct: 81 GMAPTIPGARQLVNHRHILVNDYIVDIPSYRCKPQDFIIIKNQ 123 >gi|37992605|gb|AAR06481.1| small ribosomal protein 4 [Neobarbella comes] Length = 184 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 82 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 141 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 142 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 182 >gi|37992445|gb|AAR06401.1| small ribosomal protein 4 [Calyptrochaeta japonica] Length = 194 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I K + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITTKDQ 134 >gi|328541168|gb|AEB21808.1| ribosomal protein S4 [Telaranea lindenbergii] Length = 197 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 5 KVIRRLGA-LPGLTSKTLKPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 55 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ + Sbjct: 56 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISI 114 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + I Sbjct: 115 NNNIVDIPSYNCEPGDLITIRDKQKSRSIITKNVNLFQNVKIPSHLTFDSIKLCGS---I 171 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 172 NQTINREWINLKINELLVVEYYSR 195 >gi|37992549|gb|AAR06453.1| small ribosomal protein 4 [Hildebrandtiella guyanensis] gi|37992551|gb|AAR06454.1| small ribosomal protein 4 [Hildebrandtiella guyanensis] Length = 190 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNSCIVDIPSYQCKPQDFITIKNQRK 132 >gi|37992563|gb|AAR06460.1| small ribosomal protein 4 [Isothecium myosuroides] Length = 195 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 153 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 193 >gi|222103462|gb|ACM44260.1| small ribosomal protein subunit 4 [Haplocladium microphyllum] Length = 203 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKS 160 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 161 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 201 >gi|32401763|gb|AAP80870.1| small ribosomal protein 4 [Pinus wallichiana] Length = 191 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + R++G T L+ LE RLD I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRISRRAKGSTGQVLLQLLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 89 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRD 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 149 KLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELLVVEYYSR 189 >gi|67035919|gb|AAY62886.1| small ribosomal protein subunit 4 [Callialaria curvicaulis] Length = 199 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K K K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNKLKSETIISKNMEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|99639907|emb|CAJ45122.1| putative ribosomal protein S4 gene [Alsophila capensis] Length = 199 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 14/193 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQ---LASVLEASQLAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPV 193 D+I V+ + L S + S ++ +P+++ S+ N V +S + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDK-IPDHLTFSLLEGNRPKGLVNRIASRESIDLNI 186 Query: 194 IMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 --NELLVVEYYSR 197 >gi|37992447|gb|AAR06402.1| small ribosomal protein 4 [Camptochaete aciphylla] Length = 194 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|6012947|emb|CAA58944.2| ribosomal protein S4 [Polypodium vulgare] Length = 201 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 44 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRVARKARGSTGQVLLQLLEMRLDNVIFHL 102 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 T+ AARQ VNHRH+LVN V+I SYRCK D+I V+ + Sbjct: 103 GLASTVPAARQLVNHRHILVNSCVVDIPSYRCKPKDIITVRNR 145 >gi|78102657|gb|ABB21542.1| small ribosomal protein 4 [Plagiochila fastigiata] gi|78102695|gb|ABB21561.1| small ribosomal protein 4 [Plagiochila montagnei] Length = 189 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHILINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRAIVT 143 >gi|99639949|emb|CAJ45126.1| putative ribosomal protein S4 gene [Cibotium barometz] Length = 187 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 14/193 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 2 LTGKASNPGETRVAA----DQSTSRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 55 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH++VN R V++ SYRCK Sbjct: 56 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRIVDVPSYRCKPK 115 Query: 139 DVIEVKQK---SKQLASVLEASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPV 193 D+I V+ + S L S + S + ++P++++++ N V ++ + + + Sbjct: 116 DIITVRNRPTSSNVLRSGINESSRGD-EIPDHLTLSLLEGNRPKGLVNRIANRESIDLNI 174 Query: 194 IMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 175 --NELLVVEYYSR 185 >gi|46811032|gb|AAT01834.1| small ribosomal protein 4 [Monoclea gottschei subsp. elongata] Length = 179 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 18 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 V T+ ARQ VNHRH+L+N V+I SY CK DVI +K + K + + + + + Sbjct: 77 GMVLTVPGARQLVNHRHILINNNMVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKS 136 Query: 163 DVPEYISVNH---DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++S + +V + S L + LVVE+YSR Sbjct: 137 KIPNHLSFDLMQVKGLVNQMIDRESILLKI------NELLVVEYYSR 177 >gi|51458155|gb|AAU03426.1| ribosomal protein small subunit 4 [Asplenium varians] Length = 190 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 82 VLFHLGIASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGNKSL 141 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 142 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 188 >gi|41323125|gb|AAR99792.1| small ribosomal protein 4 [Plagiochila subplana] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTEQQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R PTI ARQ VNH H+ +N V+I SY C+ GDVI Sbjct: 78 GSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHGHISINNDIVDIPSYNCEPGDVI 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 V KQKS+ + + + + +P +++ N + + + + + + L Sbjct: 138 TVGNKQKSQSIVTK-NINSFQKLKIPSHLTFNLTQLRGS---VNQMINREWIDLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|311901168|gb|ADQ13134.1| small ribosomal protein 4 [Nephrolepis acutifolia] gi|311901180|gb|ADQ13140.1| small ribosomal protein 4 [Nephrolepis brownii] gi|311901188|gb|ADQ13144.1| small ribosomal protein 4 [Nephrolepis davallioides] gi|311901192|gb|ADQ13146.1| small ribosomal protein 4 [Nephrolepis falcata] Length = 178 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GLASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKSPRKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|228016658|gb|ACP51487.1| ribosomal protein S4 [Pinus albicaulis] Length = 203 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + R++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNIIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ +N V+I SY CK DVI ++ + + A + + L +RD Sbjct: 101 GMAPTIPGARQLVNHGHIRINDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRD 160 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 161 KLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELLVVEYYSR 201 >gi|89147820|gb|ABD62758.1| ribosomal protein 4 [Metzgeria pubescens] Length = 199 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 16 PGLTSKTFKLKSSYIDRSAPNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 75 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 134 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNL 199 +K + + + ++E + L + +P ++ + + + R I D+ + L Sbjct: 135 TIKNQERYRSIIMERLNSLQKPGIPNHLVFDSTKFIGSVNRMINREWIDLK----INELL 190 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 191 VVEYYSR 197 >gi|42794668|gb|AAS45731.1| Rps4 [Psammisia dolichopoda] Length = 142 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 65/98 (66%), Gaps = 1/98 (1%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 46 YHIRLQEKQKLRFHYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAS 104 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ VNHRHVLVNGR ++I SYRCK D+I ++ Sbjct: 105 TIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARK 142 >gi|41323107|gb|AAR99783.1| small ribosomal protein 4 [Plagiochila diversifolia] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNYIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|18027940|gb|AAL55894.1| ribosomal protein S4 [Pteris multifida] Length = 191 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 I++R TI AARQ VNHRH+LVN R V+I SYRCK D+I ++ + Sbjct: 83 IIFRFGMASTIPAARQLVNHRHILVNHRIVDIPSYRCKPRDIITIRNR 130 >gi|320455036|dbj|BAJ65665.1| small ribosomal protein 4 [Metzgeria temperata] gi|320455040|dbj|BAJ65667.1| small ribosomal protein 4 [Metzgeria temperata] Length = 187 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 93/162 (57%), Gaps = 14/162 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTFKSKSSYIDRPAPNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 +K + + + ++E + + ++ +P +++ + ++ + R+ Sbjct: 131 TIKNQERYRSIIMERLNSIQKQGIPNHLAFDSTKIIGSVNRV 172 >gi|313573570|emb|CAT03207.1| ribosomal protein S4 [Neckera himalayana] gi|313573572|emb|CAT03208.1| ribosomal protein S4 [Neckera polyclada] Length = 196 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D+I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDLITIKDQRK 138 >gi|328541090|gb|AEB21769.1| ribosomal protein S4 [Neogrollea notabilis] Length = 199 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 18/203 (8%) Query: 10 KIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 K+ RR+G N +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KVIRRLGALPGLTNKTLKPKSGYNDRSTS--------NRKVSQYRIRLEEKQKLRFHYG- 57 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 58 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHITIN 117 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD I ++ K K + + + L + +P +++ + + + I Sbjct: 118 DNIVDIPSYNCQPGDFIIIRDKQKSQSIITKNFNLFQNSKIPSHLTFDS---IKLYGSIN 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 QTINREWIDLKINELLVVEYYSR 197 >gi|237688629|ref|YP_002905246.1| ribosomal protein S4 [Pinus gerardiana] gi|226876089|gb|ACO89345.1| ribosomal protein S4 [Pinus gerardiana] gi|228016279|gb|ACP51114.1| ribosomal protein S4 [Pinus strobus] gi|228016915|gb|ACP51740.1| ribosomal protein S4 [Pinus ayacahuite] gi|228017283|gb|ACP52102.1| ribosomal protein S4 [Pinus flexilis] gi|228017348|gb|ACP52166.1| ribosomal protein S4 [Pinus lambertiana] gi|228017542|gb|ACP52357.1| ribosomal protein S4 [Pinus monticola] gi|228017604|gb|ACP52418.1| ribosomal protein S4 [Pinus parviflora var. pentaphylla] gi|228017668|gb|ACP52481.1| ribosomal protein S4 [Pinus peuce] Length = 203 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + R++G T L+ LE RLD I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNILFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 101 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRD 160 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 161 KLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELLVVEYYSR 201 >gi|18027994|gb|AAL55921.1| ribosomal protein S4 [Eriosorus rufescens] Length = 191 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 6 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 60 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+LVN V+I SYRC Sbjct: 61 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNKGIVDIPSYRCN 120 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V +S + + + Sbjct: 121 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMASRESLDLEI- 178 Query: 195 MQPNLVVEFYSR 206 VEFYSR Sbjct: 179 -NELFXVEFYSR 189 >gi|328541166|gb|AEB21807.1| ribosomal protein S4 [Telaranea tetradactyla] Length = 197 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 5 KVIRRLGA-LPGLTSKTLKPKSSYNDRSAS--------NKKVSQYRIRLEEKQKLRFHYG 55 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ + Sbjct: 56 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISI 114 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + I Sbjct: 115 NNNIVDIPSYNCEPGDLITIRDKQKSRSIITKNVNLFQNVKIPSHLTFDSIKLCGS---I 171 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 172 NQTINREWINLKINELLVVEYYSR 195 >gi|26399172|sp|Q9FSE4|RR4_PLAAD RecName: Full=30S ribosomal protein S4, chloroplastic gi|10798670|emb|CAC12828.1| small ribosomal protein 4 [Plagiochila adiantoides] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRSHYG-LAERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQILLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKQK 144 >gi|294337090|emb|CAQ52695.1| ribosomal protein S4 [Calyptothecium recurvulum] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 144 >gi|80974140|gb|ABB53763.1| small ribosomal subunit protein 4 [Euptychium dumosum] Length = 202 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 100 GMAPTISGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 200 >gi|118724449|gb|ABL10798.1| ribosomal protein small subunit 4 [Doryopteris nobilis] gi|118724451|gb|ABL10799.1| ribosomal protein small subunit 4 [Doryopteris rediviva] Length = 195 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 6/173 (3%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q K S F ++L AKQ+++ YG ++E++ + + A R++G T + LE R Sbjct: 25 LGDQSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTKGSTGQVPLQLLEMR 83 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD I+++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 84 LDNIIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-K 142 Query: 156 ASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 GKSLGRDEVPDHLTVSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|16930548|gb|AAL31955.1| ribosomal protein small subunit 4 [Matteuccia struthiopteris] Length = 195 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 33 KISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVPLQPLEMRLDNVIFHL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRCK D+ V+ + + L L Sbjct: 92 GMASTIPAARQLVNHRHILVNSRVVDIPSYRCKPKDITTVRNRPTS-CNALRGESLGGDK 150 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ S++ N V +S + V + LVVE+Y R Sbjct: 151 TPDHLTASISEGNRPTGLVNRIASRESVNLNI--NELLVVEYYPR 193 >gi|32401787|gb|AAP80882.1| small ribosomal protein 4 [Abies homolepis] Length = 191 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK D+I ++ + + A + + L +RD Sbjct: 89 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDIITIRDQQRLRAIIRKNIDLFQRD 148 Query: 164 V-PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P +++ N +I S K + + LVVE+YSR Sbjct: 149 ILPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 189 >gi|51458107|gb|AAU03405.1| ribosomal protein small subunit 4 [Asplenium fissum] Length = 180 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 16 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 74 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 75 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRDKSL 134 Query: 159 LAERDVPEYISV 170 + ++ P++++V Sbjct: 135 VGDK-TPDHLTV 145 >gi|7576649|gb|AAF63937.1| ribosomal protein system 4 [Phyllodrepanium falcifolium] Length = 186 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN +V+I SYRCK D I +K + K + + ++ Sbjct: 85 GMSLTIPEARQLVNHRHILVNDCTVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKY 144 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 145 KIPNHLTYNSLKKKGLVNQI---LDRKSIDLKINELLVVEYYSR 185 >gi|67035895|gb|AAY62874.1| small ribosomal protein subunit 4 [Amblystegium serpens] Length = 199 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 97 GMAPTIPGARQLVNHRHILVNDSIVDIPSYRCKPQDFITIKNQQKSETIIS 147 >gi|162415128|gb|ABX89138.1| ribosomal protein S4 [Didymodon giganteus] Length = 185 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E + + + A +++G T L+ L RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITEXQLLNYVRVARKAKGSTGXILLQLLXMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+LVN VBI SYRCK D I + + K + + +++ Sbjct: 83 GMAPTIPGARQLVNHXHILVNNXIVBIPSYRCKPQDFITINDRKKSQXXIXKNVBFSQKS 142 Query: 164 -VPEYISVN 171 +P +++ N Sbjct: 143 KIPNHLTFN 151 >gi|37992511|gb|AAR06434.1| small ribosomal protein 4 [Euptychium robustum] Length = 198 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + Sbjct: 96 GMAPTISGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNE 138 >gi|66866207|gb|AAY57777.1| small ribosomal protein 4 [Aulacomnium palustre] Length = 206 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 40 KISQYRIRLEENQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 99 GMAPTIPGARQLVNHRHILVNDHIVDIPSYRCKPQDFITIKDRQKSEAII 148 >gi|320455032|dbj|BAJ65663.1| small ribosomal protein 4 [Metzgeria decipiens] Length = 185 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 93/162 (57%), Gaps = 14/162 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTFKSKSSYIDRPAPNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 +K + + + ++E + + ++ +P +++ + ++ + R+ Sbjct: 131 TIKNQERYRSIIMERLNSIQKQGIPNHLAFDSTKIIGSVNRV 172 >gi|294337275|emb|CAQ52786.1| ribosomal protein S4 [Thamnobryum maderense] Length = 202 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN R V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|78102669|gb|ABB21548.1| small ribosomal protein 4 [Plagiochila gymnoclada] Length = 189 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 ++ K K + V + L ++ +P +++ + + Sbjct: 131 AIRNKEKSQSIVTKNINLFQKLKIPSHLTFDSTQL 165 >gi|20531057|gb|AAM27351.1| ribosomal protein 4 [Buxbaumia viridis] Length = 192 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + A R++G T L+ LE RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLKYIRIARRTKGSTGEILLQLLEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN +NI SY CK D I +K K V + +L+++ Sbjct: 90 GIAPTIPGARQLVNHRHILVNNNIINIPSYCCKPQDFITIKNSQKSQTIVTKNIELSQKS 149 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTFNFLEKKGLVNQI---LDHESIGLKINXLLVVEYYSR 190 >gi|7576653|gb|AAF63939.1| ribosomal protein system 4 [Prionodon densus] Length = 189 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRF 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 88 GMASTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQPKSEAIISKNIEFYQKS 147 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 188 >gi|328541142|gb|AEB21795.1| ribosomal protein S4 [Telaranea lawesii] Length = 200 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKPKSSYNDRSPSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R PTI ARQ VNHRH+ +N V+I SY C GD I Sbjct: 75 GSTGQVLLQLLEMRLDNTILRLGMAPTIPGARQLVNHRHISINNNIVDIPSYNCGPGDRI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSRSIITKNVNLFQNVKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|119472063|ref|ZP_01614321.1| 30S ribosomal protein S4 [Alteromonadales bacterium TW-7] gi|119445198|gb|EAW26490.1| 30S ribosomal protein S4 [Alteromonadales bacterium TW-7] Length = 122 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 12/126 (9%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R K + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHGAR-KGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHR 119 Q V+H+ Sbjct: 116 QLVSHK 121 >gi|63101053|gb|AAY33151.1| small ribosomal protein 4 [Calyptothecium praelongum] Length = 194 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 136 >gi|37992725|gb|AAR06541.1| small ribosomal protein 4 [Weymouthia mollis] Length = 188 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 186 >gi|41323105|gb|AAR99782.1| small ribosomal protein 4 [Plagiochila disticha] Length = 202 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHILINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 138 TIGNKQKSRAIV 149 >gi|18920767|gb|AAL82428.1| ribosomal protein system 4 [Plagiothecium curvifolium] Length = 194 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|294337240|emb|CAQ52769.1| ribosomal protein S4 [Porotrichodendron superbum] Length = 202 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRK 144 >gi|58293859|gb|AAW69877.1| small ribosomal protein 4 [Bryomaltaea obtusifolia] gi|63191759|gb|AAY34839.1| small ribosomal protein subunit 4 [Bryomaltaea obtusifolia] Length = 187 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++ Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFLL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLINHRHILVNDHIVDIPSYRCKPQDSITIKSRQK 129 >gi|51458097|gb|AAU03400.1| ribosomal protein small subunit 4 [Asplenium erectum] Length = 181 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD Sbjct: 14 QSTSKKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 72 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S Sbjct: 73 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSF 132 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I + ++ LVVE+YSR Sbjct: 133 VRDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLDINEL---------LVVEYYSR 179 >gi|56070071|gb|AAV70696.1| ribosomal protein 4 [Ephedra likiangensis] Length = 162 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 1 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 60 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 119 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 VP Y++ N +I + KD+ + + LV+E+Y Sbjct: 120 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEXLVIEYY 162 >gi|29422379|gb|AAO84585.1| small ribosomal protein 4 [Philonotis thwaitesii] Length = 153 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 13/157 (8%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK +YG I+E++ + + A + +G T L+ LE RLD +++R PTI ARQ Sbjct: 3 KQKSXCHYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQ 61 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN-- 171 VNHRH+LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 62 LVNHRHILVNDRLVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSL 121 Query: 172 -HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +V + R LK + LVVE+YSR Sbjct: 122 ENKGLVNQILDRESIGLK-------INELLVVEYYSR 151 >gi|32401767|gb|AAP80872.1| small ribosomal protein 4 [Pinus krempfii] Length = 194 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + R++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRSHYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNILFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ N V+I SY CK DVI ++ + + A + + L +RD Sbjct: 92 GMAPTIPGARQLVNHGHIRFNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRD 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 152 KLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKSNELLVVEYYSR 192 >gi|12642266|gb|AAK00215.1| rps4 [Discelium nudum] Length = 188 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L+ KQK++ +YG I+E++ + + A +++G T L+ LE RLD +V R Sbjct: 27 KISQYRIRLKEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQILEMRLDNVVXRX 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PT+ ARQ VNH+H+LVN V++ S RCK D I +K + K A +++ +++ Sbjct: 86 GMAPTVPGARQLVNHKHILVNDCIVDVPSDRCKPQDFITIKDRPKSQAIIIKNIDFSQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ D++ + + L + + LVVE+YSR Sbjct: 146 KVPNHLT--FDSLXKKGI-VNQILDRESIGLKINELLVVEYYSR 186 >gi|3098252|gb|AAC15574.1| small ribosomal protein 4 [Hildebrandtiella pachyclada] Length = 175 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 14 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 73 GMAPTIPGARQLVNHRHILVNSCIVDIPSYQCKPQDFITIKNQRK 117 >gi|237688560|ref|YP_002905178.1| ribosomal protein S4 [Pinus contorta] gi|226875388|gb|ACO89126.1| ribosomal protein S4 [Pinus contorta] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 9/162 (5%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R P Sbjct: 44 YRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAP 102 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE 166 TI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD +P Sbjct: 103 TIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPN 162 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 163 HLTF-HSLQYKGFI---NQIIDSKW-INLKINELLVVEYYSR 199 >gi|125662702|gb|ABN50301.1| small ribosomal protein 4 [Taxodium mucronatum] Length = 197 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 36 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 94 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K + Sbjct: 95 TIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR 135 >gi|157272407|gb|ABV27018.1| ribosomal protein small subunit 4-like protein [Azolla caroliniana] Length = 203 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 10/169 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +++G T + LE RLD I++ Sbjct: 37 KISQFCVRLEAKQRLRYNYG-LTERQLLRYVRIARKTKGSTGQVPLQLLEMRLDNILFHL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 PTI AARQ VNHRH+LVN V++ SYRCK D+I V+ + L L+ + + E Sbjct: 96 GMAPTIPAARQPVNHRHILVNDHIVDVPSYRCKPKDIITVRNRPTSLNG-LKRTGIIESF 154 Query: 162 --RDVPEYISV--NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+++S+ + DN V ++ + + + VVE+YSR Sbjct: 155 RGNQIPDHLSLSFSEDNRPKGLVNKTATRESIDLNI--NELSVVEYYSR 201 >gi|328541146|gb|AEB21797.1| ribosomal protein S4 [Lepidozia setigera] Length = 190 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 KPKSSYNDRSAS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH+H+ +N V+I SY C+ GD+I Sbjct: 65 GSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHKHISINNNIVDIPSYNCEPGDII 124 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 125 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDPIKLCGS---INQTINREWINLKINELLV 181 Query: 201 VEFYSR 206 VE+YSR Sbjct: 182 VEYYSR 187 >gi|314906551|gb|ADT61795.1| ribosomal protein subunit 4 [Scleropodium californicum] gi|314906575|gb|ADT61807.1| ribosomal protein subunit 4 [Scleropodium californicum] gi|314906599|gb|ADT61819.1| ribosomal protein subunit 4 [Scleropodium californicum] Length = 180 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN +V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCTVDIPSYRCKPQDFITIKNQRK 122 >gi|172072915|ref|YP_001806676.1| ribosomal protein S4 [Cryptomeria japonica] gi|171854934|dbj|BAG16674.1| ribosomal protein S4 [Cryptomeria japonica] gi|239794302|dbj|BAH73299.1| ribosomal protein S4 [Cryptomeria japonica] gi|239794385|dbj|BAH73381.1| ribosomal protein S4 [Cryptomeria japonica] Length = 207 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 46 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 104 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K + Sbjct: 105 TIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR 145 >gi|255116236|gb|ACU01170.1| small ribosomal protein subunit 4 [Calyptothecium hookeri] Length = 186 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 128 >gi|42556414|gb|AAS19802.1| small ribosomal protein 4 [Gackstroemia magellanica] Length = 191 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKLKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ TI ARQ VNHRH+ +N +VNI SY CK GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFCLGMASTIPGARQLVNHRHISINNETVNIPSYNCKPGDII 126 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K Q + + ++P +++ + + + +I + + + LV Sbjct: 127 TIRNSEKSQSIITTNMNSFHKSEIPNHLTFDSTQLRGSINKI---IHREWVDLKVNELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|23477334|gb|AAN34643.1| ribosomal protein small subunit 4 [Woodwardia prolifera] Length = 179 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++R Sbjct: 17 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFRL 75 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ + Sbjct: 76 GMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDIITVRSR 118 >gi|67035907|gb|AAY62880.1| small ribosomal protein subunit 4 [Palustriella falcata] Length = 199 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E+RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKSQRK 141 >gi|125662694|gb|ABN50297.1| small ribosomal protein 4 [Keteleeria davidiana var. calcarea] Length = 196 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 94 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 153 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 154 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 194 >gi|78102711|gb|ABB21569.1| small ribosomal protein 4 [Plagiochila propinqua] Length = 175 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 ++ K K + V + L ++ +P +++ + + Sbjct: 131 AIRNKEKSQSIVTKNINLFQKLKIPSHLTFDSTQL 165 >gi|12642242|gb|AAK00203.1| rps4 [Chamaebryum pottioides] Length = 193 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 2/130 (1%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 +K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 31 TKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQILEMRSDNVIFR 89 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + +++ Sbjct: 90 LGMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDRQKSQAMITKNIDFSQK 149 Query: 163 D-VPEYISVN 171 VP +++ N Sbjct: 150 SKVPNHLTFN 159 >gi|328541086|gb|AEB21767.1| ribosomal protein S4 [Zoopsis liukiuensis] Length = 186 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 11 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 61 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 62 GSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHGHIAINHNIVDIPSYNCEPGDII 121 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + +++ L + +P +++ + + + I ++ + + LV Sbjct: 122 TIRDKQKSQSVIIKNINLFQNLKIPSHLTFDSIKLCGS---INQTINCEWINLKINELLV 178 Query: 201 VEFYSR 206 VE+YSR Sbjct: 179 VEYYSR 184 >gi|125662704|gb|ABN50302.1| small ribosomal protein 4 [Glyptostrobus pensilis] Length = 197 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 36 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 94 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K + Sbjct: 95 TIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR 135 >gi|294337244|emb|CAQ52771.1| ribosomal protein S4 [Porotrichum frahmii] Length = 202 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCXVDIPSYRCKPQDFITIKDQRK 144 >gi|162423604|gb|ABX89574.1| small ribosomal protein 4 [Araucaria bidwillii] gi|162423606|gb|ABX89575.1| small ribosomal protein 4 [Araucaria brasiliensis] Length = 216 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 7/126 (5%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKS 147 LE RLD I++R TI ARQ V HRH+LVNGR V+ SYRC DVI +K Q+S Sbjct: 71 QLLEMRLDNIIFRLGMALTIPGARQLVCHRHILVNGRIVDKPSYRCNPYDVITIKDQQRS 130 Query: 148 KQLASV 153 + + + Sbjct: 131 RNIIKI 136 >gi|78102635|gb|ABB21531.1| small ribosomal protein 4 [Plagiochila corrugata] Length = 175 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHILINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 131 TIGNKQKSRAIV 142 >gi|99640055|emb|CAJ45148.1| putative ribosomal protein S4 gene [Sphaeropteris novaecaledoniae] Length = 199 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVSLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|42794710|gb|AAS45750.1| Rps4 [Thibaudia costaricensis] Length = 211 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 11/159 (6%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + +++G T L+ LE RLD I++R TI ARQ Sbjct: 53 KQKLRFHYG-LTERQLLKYVRIPGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQ 111 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEY 167 VN RHV VNGR ++I SYRCK D+I ++KS+ L L + + + VP + Sbjct: 112 LVNXRHVXVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKRKRKRVPSH 171 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++N +I ++ K V + + LVVE+YSR Sbjct: 172 LTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|7576661|gb|AAF63943.1| ribosomal protein system 4 [Plagiothecium cavifolium] Length = 190 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRPDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 149 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|228016097|gb|ACP50935.1| ribosomal protein S4 [Pinus rzedowskii] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRTKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RL+ I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLNNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQPRLRAIIKKNIDLFQRDKLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|304322977|ref|YP_003795515.1| ribosomal protein S4 [Floydiella terrestris] gi|270048176|gb|ACZ58471.1| ribosomal protein S4 [Floydiella terrestris] Length = 3123 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 9/127 (7%) Query: 23 PKSPVNTRS-YGPGLHGQRR--KSKP----SY-FGLQLRAKQKMKKYYGDISEKKFRSIF 74 P++P R PG HG+ + K KP Y F ++L+ KQ+++ YYG I+EK+ + Sbjct: 61 PENPFGLRKVIPPGQHGRAKLFKKKPYESNEYDFLIRLKFKQRLRYYYG-ITEKQLFNYV 119 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 + A +S+G T L+ LE RLD IV+R PTI AARQ ++H H+LVN + V I S + Sbjct: 120 ELARKSKGSTGLVLLRLLEMRLDNIVFRLHMAPTIAAARQLISHGHILVNKKKVTIPSAQ 179 Query: 135 CKEGDVI 141 CK D+I Sbjct: 180 CKPKDLI 186 >gi|32401882|gb|AAP80929.1| small ribosomal protein 4 [Cryptomeria japonica] Length = 195 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 34 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 92 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K + Sbjct: 93 TIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR 133 >gi|6002021|emb|CAA58917.1| ribosomal protein S4 [Elymus repens] Length = 196 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR VNI S+RCK D+I K Q+SK L AS Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDP 157 Query: 161 ERDVPEYISVN 171 + +P++++++ Sbjct: 158 GK-LPKHLTID 167 >gi|222084129|ref|YP_002519581.1| ribosomal protein S4 [Keteleeria davidiana] gi|220983681|dbj|BAH11447.1| ribosomal protein S4 [Keteleeria davidiana] Length = 201 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 158 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 159 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 199 >gi|125662714|gb|ABN50307.1| small ribosomal protein 4 [Ephedra gerardiana] Length = 206 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%) Query: 34 PGLHGQR--------RKSKPSY----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL +R R S+P + + + L+ KQK++ +YG ++E++ R A ++ Sbjct: 19 PGLTSKRPKYKKRVHRSSRPWWKKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQ 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R TI ARQ VNHRH+LVN V+I SYRCK D+I Sbjct: 78 GSTGQVLLQLLEMRLDNILFRLGIARTIPGARQLVNHRHILVNHHIVDIRSYRCKPQDII 137 Query: 142 EVKQKSKQLASVLEASQLAE-----RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 +K K + + + VP Y + N +I + K++ + + Sbjct: 138 TLKGKDPERLRIRMKKSWGQLWKNRNRVPHYSTFNLSQNKGIVNKIIDT-KNLQLKI--K 194 Query: 197 PNLVVEFYSR 206 LV+E+YSR Sbjct: 195 EMLVIEYYSR 204 >gi|118577579|gb|ABL07155.1| small ribosomal protein 4 [Piper glabrescens] Length = 148 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 85/150 (56%), Gaps = 5/150 (3%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++ +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VN Sbjct: 1 LRFHYG-LTERQLIRYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMTSTIPGARQLVN 59 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMV 176 HRHVLVNGR V+I SYRCK D+I + + + V + A R ++P++++++ Sbjct: 60 HRHVLVNGRIVDIPSYRCKPRDIITTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYK 119 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S K V + LVVE+YSR Sbjct: 120 GVVNQIIDS-KGVGLKI--NELLVVEYYSR 146 >gi|328541172|gb|AEB21810.1| ribosomal protein S4 [Telaranea martinii] Length = 200 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDLI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSRSIITRNVNLFQNLKIPSHLAFDSIKLCGS---INQTINREWIDLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|227439429|gb|ACP31391.1| ribosomal protein small subunit 4 [Pteridium aquilinum subsp. wightianum] Length = 190 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ Y ++E++ + A ++RG T L LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNY-RLTERQPLKYVRIARKTRGSTGQVLPQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S Sbjct: 82 VIFHLGMASTIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESL 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L E+ +P++ +S++ + V +S + V + LVVE+YSR Sbjct: 142 LGEK-IPDHLTLSLSEGSRPTGLVNRIASRESVNLNI--NELLVVEYYSR 188 >gi|48527371|gb|AAT45818.1| small ribosomal protein 4 [Plagiochila ensiformis] Length = 202 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIIT 150 >gi|32401870|gb|AAP80923.1| small ribosomal protein 4 [Sequoia sempervirens] Length = 170 Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 33/180 (18%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 5 KASKCPVRLKEKQRLRFHYG-LAERQLLQYVRIAKRAKGSTGQVLLQLLEMRLDNILFRL 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 +I ARQ VNHRH+LVN R V+I SYRCK D I +K K + Sbjct: 64 GMALSIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR--------------- 108 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVP---------YPVI--------MQPNLVVEFYSR 206 + I+ N DN +R+P LK + + +I + LVVE+YSR Sbjct: 109 LRNIINKNIDNFKKDKMRVPPHLKLIKKKTQYSGLVHKIIDNSRIGLKINELLVVEYYSR 168 >gi|32401878|gb|AAP80927.1| small ribosomal protein 4 [Taxodium distichum] Length = 193 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 32 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 90 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN R V+I SYRCK D I +K K + Sbjct: 91 TIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR 131 >gi|32401775|gb|AAP80876.1| small ribosomal protein 4 [Keteleeria davidiana] Length = 189 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 87 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 147 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 187 >gi|118724411|gb|ABL10779.1| ribosomal protein small subunit 4 [Pellaea dura] Length = 181 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 14 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 72 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 73 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 131 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + V ++ + V + LVVE+YSR Sbjct: 132 LGRNEVPDHLTLSISKTSEPTGLVNHMANRESVNLDI--NELLVVEYYSR 179 >gi|66866205|gb|AAY57776.1| small ribosomal protein 4 [Aulacomnium heterostichum] Length = 207 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L QK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 41 KISQYRIRLEENQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN R V+I SYRCK D I +K + + A + Sbjct: 100 GMAPTIPGARQLVNHRHILVNDRIVDIPSYRCKPQDFITIKDRQESEAII 149 >gi|294337112|emb|CAQ52706.1| ribosomal protein S4 [Entodon dregeanus] Length = 202 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDSIVDIPSYRCKPQDFITIKNQRK 144 >gi|294337114|emb|CAQ52707.1| ribosomal protein S4 [Eurhynchiastrum pulchellum] Length = 202 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|18920739|gb|AAL82414.1| ribosomal protein system 4 [Herzogiella cylindricarpa] Length = 197 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMALTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|67036062|gb|AAY62957.1| small ribosomal protein subunit 4 [Plagiothecium cavifolium] Length = 192 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE R D +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRPDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 150 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 190 >gi|78102637|gb|ABB21532.1| small ribosomal protein 4 [Plagiochila crozetensis] Length = 165 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PG + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGFTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|118626081|emb|CAL39344.1| small ribosomal protein 4 [Blepharidophyllum densifolium] Length = 202 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGE--NLWGR---PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G L R PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSRTLKPKSSYIDRSTS--------NKKVSQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ Sbjct: 53 QKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNHRH+ +N V+I SY C+ GD+I VK K K + + + L ++ +P +++ + Sbjct: 112 VNHRHISINNDIVDIPSYNCEPGDIITVKNKQKSQSIITKNIHLFQKLKIPSHLTFDSTE 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + FV + + + + LVVE+YSR Sbjct: 172 LRG-FVNQMINREWINLKI--NELLVVEYYSR 200 >gi|83314082|gb|ABC02210.1| small ribosomal subunit protein 4 [Garovaglia powellii] Length = 199 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 4/137 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G RS ++ K S + ++L KQK++ +YG I+E++ Sbjct: 7 KIIRRLG-TLPGLTNKIPQVRS--SSINQSTSNKKISQYRVRLEEKQKLRFHYG-ITERQ 62 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T + LE RLD I++R PTI ARQ VNHRH+ VN VN Sbjct: 63 LLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIFVNDCIVN 122 Query: 130 IGSYRCKEGDVIEVKQK 146 I SYRCK DVI VK + Sbjct: 123 IPSYRCKPQDVIIVKNE 139 >gi|125662684|gb|ABN50292.1| small ribosomal protein 4 [Sequoia sempervirens] Length = 207 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 33/176 (18%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 46 YPVRLKEKQRLRFHYG-LAERQLLQYVRIAKRAKGSTGQVLLQLLEMRLDNILFRLGMAL 104 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 +I ARQ VNHRH+LVN R V+I SYRCK D I +K K + + Sbjct: 105 SIPEARQLVNHRHILVNDRIVDIPSYRCKPQDFISIKDKQR---------------LRNI 149 Query: 168 ISVNHDNMVATFVRIPSSLKDVP---------YPVI--------MQPNLVVEFYSR 206 I+ N DN +R+P LK + + +I + LVVE+YSR Sbjct: 150 INKNIDNFKKDKMRVPPHLKLIKKKSQYSGLVHKIIDNSRIGLKINELLVVEYYSR 205 >gi|99640050|emb|CAJ45147.1| putative ribosomal protein S4 gene [Sphaeropteris medullaris] Length = 198 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 13 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 66 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 67 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 126 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 127 DIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIALNI- 185 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 186 -NELLVVEYYSR 196 >gi|67036010|gb|AAY62931.1| small ribosomal protein subunit 4 [Entodontopsis leucostega] Length = 197 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNXIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLINHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 139 >gi|118724429|gb|ABL10788.1| ribosomal protein small subunit 4 [Aspidotis carlotta-halliae] Length = 195 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 87 IIFQLGMASTIPAARQLVNHRHILVNHRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 145 Query: 159 LAERDVPEYISV 170 L +VP+++++ Sbjct: 146 LGRGEVPDHLTL 157 >gi|37992713|gb|AAR06535.1| small ribosomal protein 4 [Trachypodopsis serrulata] Length = 190 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDSMVDIPSYRCKPQDFITIKNQRK 132 >gi|328541060|gb|AEB21754.1| ribosomal protein S4 [Kurzia calcarata] Length = 197 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD + R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+ +N V+I SY C+ GD+I +++K K + + + L + Sbjct: 95 GMASTIPGARQLVNHRHIPINKNIVDIPSYNCEPGDIITIREKQKSRSVITKNINLFQNS 154 Query: 164 -VPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + I L D+ + LVVE+YSR Sbjct: 155 KIPSHLTFDSIKLCGSINQTINRELIDLK----INELLVVEYYSR 195 >gi|118724399|gb|ABL10773.1| ribosomal protein small subunit 4 [Paragymnopteris marantae] Length = 182 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 15 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 74 VIFQLGMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 132 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 133 FGRDEVPDHLTLSISKANEPTGLVNHMANXESVNLDI--NELLVVEYHSR 180 >gi|99639966|emb|CAJ45130.1| putative ribosomal protein S4 gene [Cibotium schiedei] Length = 199 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 108/203 (53%), Gaps = 14/203 (6%) Query: 10 KIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K+ RR+ + L G+ +P TR Q K S F ++L AKQ+++ YG ++E Sbjct: 3 KVIRRLKDLPGLTGKASNPRETRVAA----DQSTSRKISQFCVRLEAKQRLRFNYG-LTE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R + + A +++G T + LE RLD I++ + TI AARQ VNHRH++VN R Sbjct: 58 RLLRYV-RIARKTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVN--HDNMVATFVRIP 183 V++ SYRCK D+I V+ + + + R ++P++++++ N V Sbjct: 117 VDVPSYRCKPKDIITVRNRPTSYNGLRSGINESSRGDEIPDHLTLSLLEGNRPKGLVNRI 176 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 ANRESIDLNI--NELLVVEYYSR 197 >gi|16930550|gb|AAL31956.1| ribosomal protein small subunit 4 [Onoclea sensibilis] Length = 191 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVPLQPLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN R V+I SYRCK D+I V+ + + L Sbjct: 83 VIFHLGMASTIPAARQLVNHRHILVNSRVVDIPSYRCKPRDIITVRNRPTS-CNALRGES 141 Query: 159 LAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P+++ S++ + V +S + V + LVVE+Y R Sbjct: 142 LGGDKTPDHLTASISEGDRPTGLVNRVASRESVNLNI--NELLVVEYYPR 189 >gi|548873|sp|P36467|RR4_PENVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|439962|emb|CAA82446.1| ribosomal protein S4 [Pennisetum villosum] Length = 196 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR V+I S+RCK D+I K Q+SK+L AS Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASS-D 156 Query: 161 ERDVPEYISVN 171 ++P++++V+ Sbjct: 157 PANLPKHLTVD 167 >gi|80974152|gb|ABB53769.1| small ribosomal subunit protein 4 [Garovaglia plicata] Length = 199 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 102/202 (50%), Gaps = 16/202 (7%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L G RS ++ K S + ++L KQK++ +YG I+E++ Sbjct: 7 KIIRRLG-TLPGLTNKIPQVRS--SSINQSTSNKKISQYRVRLEEKQKLRFHYG-ITERQ 62 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T + LE RLD I++R TI ARQ VNHRH+LVN VN Sbjct: 63 LLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRLGMASTIPGARQLVNHRHILVNDCIVN 122 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YISVNHDNMVATFV-RIPS 184 I SYRCK DVI VK + + + ++ +P YI + +V + R Sbjct: 123 IPSYRCKPQDVIIVKNEKNSEGVINKDEDFHQKYKIPNHLTYIFLEKKGLVNKILDRESI 182 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 SLK + LVVE+YSR Sbjct: 183 SLK-------INELLVVEYYSR 197 >gi|23477328|gb|AAN34640.1| ribosomal protein small subunit 4 [Woodwardia japonica] Length = 185 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V++ SYRCK D+I + + + L + Sbjct: 82 XMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDIITARNRPTS-CNALGGESPGGGE 140 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ S++ + V ++ + V + LVVE+YSR Sbjct: 141 TPDHLTASLSEGDRPTGLVNRIANRESVNLNI--NELLVVEYYSR 183 >gi|118724431|gb|ABL10789.1| ribosomal protein small subunit 4 [Aspidotis densa] Length = 186 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 19 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 78 IIFQLGMASTIPAARQLVNHRHILVNHRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 136 Query: 159 LAERDVPEYISV 170 L +VP+++++ Sbjct: 137 LGRGEVPDHLTL 148 >gi|46811046|gb|AAT01841.1| small ribosomal protein 4 [Lobatiriccardia lobata] Length = 197 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P + Y + K S + ++L KQK++ +YG ++E Sbjct: 3 RMKIIRRLGTLPGLTSKTPGSGSGY---IDRSTSSKKISQYRIRLEEKQKLRFHYG-LTE 58 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A ++G T L+ LE RLD ++R VPTI AARQ VNH+HV +N Sbjct: 59 RQLLKYVRVARGAKGSTGQLLLQLLEMRLDNTIFRLGMVPTIPAARQLVNHQHVSINENI 118 Query: 128 VNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GDVI ++ ++K +L + + + + ++P +++ + N + + +I + Sbjct: 119 VDIPSYNCQPGDVITIRNQAKCRLITERDMNLFQKPEIPNHLAFDSANFLGSINQI---I 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 DRNWIDLKVNELLVVEYYSR 195 >gi|294337228|emb|CAQ52763.1| ribosomal protein S4 [Pendulothecium punctatum] Length = 202 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G RS ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTPQLRS--GSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|149777728|gb|ABR28494.1| ribosomal protein small subunit 4-like protein [Asplenium richardii] Length = 188 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSXSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNR 127 >gi|80974142|gb|ABB53764.1| small ribosomal subunit protein 4 [Euptychium mucronatum] Length = 168 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 7 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 65 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 66 GMAPTISGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGIINKNGDFHQKS 125 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 126 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 166 >gi|51458110|gb|AAU03406.1| ribosomal protein small subunit 4 [Asplenium septentrionale subsp. caucasicum] Length = 188 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 82 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRNKSL 141 Query: 159 LAERDVPEYISV 170 + ++ P++++V Sbjct: 142 VGDK-TPDHLTV 152 >gi|51458099|gb|AAU03401.1| ribosomal protein small subunit 4 [Asplenium lunulatum] Length = 189 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQK++ YG ++E++ + A R+RG T + LE RLD +++ Sbjct: 27 KISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ + S + ++ Sbjct: 86 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGDKSFVRDK- 144 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I + ++ LVVE+YSR Sbjct: 145 TPDHLTVSLSEGDRPTGLVNRVANRESINLDINEL---------LVVEYYSR 187 >gi|37992507|gb|AAR06432.1| small ribosomal protein 4 [Duthiella formosa] Length = 188 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDSMVDIPSYRCKPQDFITIKNQRK 130 >gi|212004225|gb|ACJ15421.1| Rps4 [Argyrochosma incana] Length = 187 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V ++ Sbjct: 79 IIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KSES 137 Query: 159 LAERDVPEYISV 170 L +VP+++++ Sbjct: 138 LGRDEVPDHLTL 149 >gi|222103548|gb|ACM44303.1| small ribosomal protein subunit 4 [Ptilium crista-castrensis] Length = 202 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|7576631|gb|AAF63928.1| ribosomal protein system 4 [Climacium americanum] Length = 186 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 +K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 25 TKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFR 83 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 LGMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 129 >gi|67036050|gb|AAY62951.1| small ribosomal protein subunit 4 [Oxyrrhynchium rugosipes] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRKSETIISKNIEFYQKY 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYSFLEKKGLVTQI---LDRESIGLKINELLVVEYYSR 197 >gi|328488194|gb|AEB19910.1| small ribosomal protein 4 [Schistochila tasmanica] Length = 191 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQSLEMRLDNTIFRLGMTTTIPGARQLVNHRHILINNYIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPN 198 +K K + + L ++ +P NH +T +R + + + + Sbjct: 127 AIKNNKKSQSMITRNLNLLQKLKIP-----NHLTFDSTQLRGLVNQRIHRESINLKINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|41323129|gb|AAR99794.1| small ribosomal protein 4 [Plagiochila rutilans] Length = 202 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|7576577|gb|AAF63901.1| ribosomal protein system 4 [Platygyrium repens] Length = 185 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 143 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V V R LK + LVVE+YSR Sbjct: 144 KIPNHLIYSSLEKKGLVNQIVDRESIGLK-------INELLVVEYYSR 184 >gi|67035978|gb|AAY62915.1| small ribosomal protein subunit 4 [Rhytidiadelphus triquetrus] Length = 194 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSETIIS 142 >gi|99639912|emb|CAJ45123.1| putative ribosomal protein S4 gene [Alsophila colensoi] gi|99639923|emb|CAJ45124.1| putative ribosomal protein S4 gene [Alsophila foersteri] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|67035889|gb|AAY62871.1| small ribosomal protein subunit 4 [Platygyrium repens] Length = 186 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 143 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V V R LK + LVVE+YSR Sbjct: 144 KIPNHLIYSSLEKKGLVNQIVDRESIGLK-------INELLVVEYYSR 184 >gi|48527427|gb|AAT45846.1| small ribosomal protein 4 [Plagiochila turgida] Length = 202 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSALNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQALLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKQK 144 >gi|42556438|gb|AAS19814.1| small ribosomal protein 4 [Leiomitra lanata] Length = 191 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNEIVDIPSYNCEPGDTI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ +++ + ++ + + LV Sbjct: 127 TIRNKHKSQSIITKNINLFQKLKIPSHLTF---DLIQLKGSVNQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|18920793|gb|AAL82441.1| ribosomal protein system 4 [Taxiphyllum deplanatum] Length = 194 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P Y S+ +V + R LK + LVVE+YSR Sbjct: 152 EIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 192 >gi|324986539|ref|YP_004276409.1| ribosomal protein S4 [Pinus nelsonii] gi|323522727|gb|ADX94975.1| ribosomal protein S4 [Pinus nelsonii] Length = 201 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + + R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R PTI ARQ VNH H+ VN V+I SY CK DV+ Sbjct: 78 STGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVLT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQPRLRAIIKKNIDLFQRDKLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|255116230|gb|ACU01167.1| small ribosomal protein subunit 4 [Rhytidiadelphus triquetrus] Length = 186 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSETIIS 134 >gi|7576589|gb|AAF63907.1| ribosomal protein system 4 [Echinodium umbrosum] Length = 186 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 +K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 TKISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFR 83 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 LGMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 129 >gi|63101003|gb|AAY33126.1| small ribosomal protein 4 [Rigodiadelphus robustus] Length = 194 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE+RLD ++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNXIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN +I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIXDIPSYRCKPQDFITIKNQRK 136 >gi|563205|gb|AAB17600.1| ribosomal protein 4 [Mycobacterium bovis] gi|1589489|prf||2211287F ribosomal protein S4 Length = 132 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+ +L G ++ R Y PG HG+ R + Y LQL+ KQK + YG + EK+FR Sbjct: 13 RRLRTDLVGGDQA-FEKRPYPPGQHGRARIKESEYL-LQLQEKQKARFTYG-VMEKQFRR 69 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 ++EA R G T L+ LESRLD ++YRA T ARQ V+H H VNG VN+ S Sbjct: 70 YYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPS 129 Query: 133 YRC 135 YR Sbjct: 130 YRV 132 >gi|222103492|gb|ACM44275.1| small ribosomal protein subunit 4 [Sanionia uncinata] Length = 203 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 145 >gi|118724457|gb|ABL10802.1| ribosomal protein small subunit 4 [Cheilanthes alabamensis] gi|118724481|gb|ABL10814.1| ribosomal protein small subunit 4 [Cheilanthes notholaenoides] Length = 195 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A +RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARITRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + +V ++ + Sbjct: 92 NMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSYNAV-KSESFGRDE 150 Query: 164 VPEYISV 170 VP+++++ Sbjct: 151 VPDHLTL 157 >gi|311901208|gb|ADQ13154.1| small ribosomal protein 4 [Nephrolepis undulata] Length = 178 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKFPGKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|32401860|gb|AAP80918.1| small ribosomal protein 4 [Agathis australis] Length = 207 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 3 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 61 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVNGR V+ SYRC DVI +K + + Sbjct: 62 QLLEMRLDNIIFRLGMTLTIPGARQLVCHRHILVNGRIVDKPSYRCNPYDVITIKDQQR 120 >gi|7576599|gb|AAF63912.1| ribosomal protein system 4 [Sanionia georgico-uncinata] Length = 190 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R +LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIALK-------INELLVVEYYSR 189 >gi|222103466|gb|ACM44262.1| small ribosomal protein subunit 4 [Sanionia uncinata] Length = 202 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 144 >gi|56070073|gb|AAV70697.1| ribosomal protein 4 [Ephedra equisetina] gi|56070075|gb|AAV70698.1| ribosomal protein 4 [Ephedra intermedia] gi|56070077|gb|AAV70699.1| ribosomal protein 4 [Ephedra minuta] gi|56070079|gb|AAV70700.1| ribosomal protein 4 [Ephedra frustillata] gi|56070081|gb|AAV70701.1| ribosomal protein 4 [Ephedra andina] gi|56070083|gb|AAV70702.1| ribosomal protein 4 [Ephedra gerardiana] gi|56070085|gb|AAV70703.1| ribosomal protein 4 [Ephedra monosperma] gi|56070087|gb|AAV70704.1| ribosomal protein 4 [Ephedra sinica] gi|56070089|gb|AAV70705.1| ribosomal protein 4 [Ephedra frustillata] gi|56070091|gb|AAV70706.1| ribosomal protein 4 [Ephedra sinica] gi|56070093|gb|AAV70707.1| ribosomal protein 4 [Ephedra californica] gi|56070095|gb|AAV70708.1| ribosomal protein 4 [Ephedra equisetina] gi|56070097|gb|AAV70709.1| ribosomal protein 4 [Ephedra fragilis] gi|56070099|gb|AAV70710.1| ribosomal protein 4 [Ephedra gerardiana] gi|56070103|gb|AAV70712.1| ribosomal protein 4 [Ephedra minuta] gi|56070105|gb|AAV70713.1| ribosomal protein 4 [Ephedra minuta] gi|56070107|gb|AAV70714.1| ribosomal protein 4 [Ephedra antisyphilitica] gi|56070109|gb|AAV70715.1| ribosomal protein 4 [Ephedra intermedia] gi|56070111|gb|AAV70716.1| ribosomal protein 4 [Ephedra torreyana] gi|56070113|gb|AAV70717.1| ribosomal protein 4 [Ephedra gerardiana] gi|56070115|gb|AAV70718.1| ribosomal protein 4 [Ephedra distachya] gi|56070117|gb|AAV70719.1| ribosomal protein 4 [Ephedra trifurca] gi|56070119|gb|AAV70720.1| ribosomal protein 4 [Ephedra major subsp. procera] gi|56070121|gb|AAV70721.1| ribosomal protein 4 [Ephedra nevadensis] gi|56070123|gb|AAV70722.1| ribosomal protein 4 [Ephedra rupestris] gi|56070125|gb|AAV70723.1| ribosomal protein 4 [Ephedra likiangensis] gi|56070127|gb|AAV70724.1| ribosomal protein 4 [Ephedra chilensis] gi|56070129|gb|AAV70725.1| ribosomal protein 4 [Ephedra tweediana] gi|56070131|gb|AAV70726.1| ribosomal protein 4 [Ephedra distachya] gi|56070133|gb|AAV70727.1| ribosomal protein 4 [Ephedra equisetina] gi|56070135|gb|AAV70728.1| ribosomal protein 4 [Ephedra aphylla] gi|56070137|gb|AAV70729.1| ribosomal protein 4 [Ephedra altissima] gi|56070139|gb|AAV70730.1| ribosomal protein 4 [Ephedra altissima] gi|56070141|gb|AAV70731.1| ribosomal protein 4 [Ephedra alata] gi|56070143|gb|AAV70732.1| ribosomal protein 4 [Ephedra foliata] gi|56070145|gb|AAV70733.1| ribosomal protein 4 [Ephedra foliata] gi|56070147|gb|AAV70734.1| ribosomal protein 4 [Ephedra ciliata] gi|56070149|gb|AAV70735.1| ribosomal protein 4 [Ephedra campylopoda] gi|56070151|gb|AAV70736.1| ribosomal protein 4 [Ephedra major] gi|56070153|gb|AAV70737.1| ribosomal protein 4 [Ephedra pachyclada] gi|270356472|gb|ACZ80491.1| ribosomal protein 4 [Ephedra major subsp. procera] gi|270356474|gb|ACZ80492.1| ribosomal protein 4 [Ephedra lomatolepis] gi|270356476|gb|ACZ80493.1| ribosomal protein 4 [Ephedra foliata] gi|270356478|gb|ACZ80494.1| ribosomal protein 4 [Ephedra foliata] gi|270356480|gb|ACZ80495.1| ribosomal protein 4 [Ephedra foliata] gi|270356484|gb|ACZ80497.1| ribosomal protein 4 [Ephedra major subsp. major] gi|270356486|gb|ACZ80498.1| ribosomal protein 4 [Ephedra distachya] gi|270356488|gb|ACZ80499.1| ribosomal protein 4 [Ephedra fragilis] gi|270356490|gb|ACZ80500.1| ribosomal protein 4 [Ephedra lomatolepis] gi|270356492|gb|ACZ80501.1| ribosomal protein 4 [Ephedra major subsp. procera] gi|270356496|gb|ACZ80503.1| ribosomal protein 4 [Ephedra fragilis] gi|270356498|gb|ACZ80504.1| ribosomal protein 4 [Ephedra laristanica] gi|270356500|gb|ACZ80505.1| ribosomal protein 4 [Ephedra milleri] Length = 162 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 1 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 60 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 119 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 VP Y++ N +I + KD+ + + LV+E+Y Sbjct: 120 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDLQLKI--KEMLVIEYY 162 >gi|42556402|gb|AAS19796.1| small ribosomal protein 4 [Calypogeia integristipula] Length = 191 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A R + Sbjct: 8 PGLTSKVLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRVK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V++K K + + + + ++ +P +++ + + FV ++ + + LV Sbjct: 127 TVREKQKSQSIITKNINVFQKLKIPSHLTFDSTELRG-FVN--QTINREWIDLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|23477324|gb|AAN34638.1| ribosomal protein small subunit 4 [Woodwardia fimbriata] gi|23477338|gb|AAN34645.1| ribosomal protein small subunit 4 [Woodwardia spinulosa] Length = 185 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 20/172 (11%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V++ SYRCK D+I + + + L + Sbjct: 82 GMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDIITARNRPTS-CNALRGESPGGGE 140 Query: 164 VPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ + N +A + ++ ++ LVVE+YSR Sbjct: 141 TPDHLTASLSEGGRPTGLVNRIANRESVNLNINEL---------LVVEYYSR 183 >gi|75858232|gb|ABA28690.1| small ribosomal protein 4 [Gyrothyra underwoodiana] Length = 191 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 8 PGLTSKILKSKSSYIDRSSSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVYIARKTK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNNIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDPVELQGS---VNQMINREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|237688697|ref|YP_002905313.1| ribosomal protein S4 [Pinus krempfii] gi|226951154|gb|ACO94217.1| ribosomal protein S4 [Pinus krempfii] Length = 203 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + R++G TS L+ LE RL+ I++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKGSTSQVLLQLLEMRLNNILFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 101 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRD 160 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ H F+ + + D + + ++ N LVVE+YSR Sbjct: 161 KLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELLVVEYYSR 201 >gi|149777722|gb|ABR28491.1| ribosomal protein small subunit 4-like protein [Asplenium hookerianum] gi|149777724|gb|ABR28492.1| ribosomal protein small subunit 4-like protein [Asplenium hookerianum] gi|149777726|gb|ABR28493.1| ribosomal protein small subunit 4-like protein [Asplenium hookerianum] gi|149777730|gb|ABR28495.1| ribosomal protein small subunit 4-like protein [Asplenium bulbiferum] gi|165935731|gb|ABY75162.1| ribosomal protein S4 [Asplenium hookerianum] Length = 188 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 21 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + Sbjct: 80 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNR 127 >gi|311901210|gb|ADQ13155.1| small ribosomal protein 4 [Nephrolepis undulata] Length = 177 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 15 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDNVIFHL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 74 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKFPGKDK 132 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 133 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 175 >gi|118724325|gb|ABL10736.1| ribosomal protein small subunit 4 [Pellaea breweri] gi|118724327|gb|ABL10737.1| ribosomal protein small subunit 4 [Pellaea breweri] Length = 195 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|42794646|gb|AAS45720.1| Rps4 [Diogenesia racemosa] Length = 211 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 11/162 (6%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQK++ ++ ++E++ + A +++G L+ LE LD I++R TI Sbjct: 50 LQKKQKLR-FHNGLTERQLLKYVRIAGKAKGSPGQVLLQLLEMGLDNILFRLGMASTIPG 108 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDV 164 ARQ VNHRHVLVNGR ++I SYRCK D+I ++KS+ L L + + + V Sbjct: 109 ARQLVNHRHVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKGKRKRV 168 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++++N +I ++ K V + + LVVE+YSR Sbjct: 169 PYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|328541032|gb|AEB21740.1| ribosomal protein S4 [Pseudocephalozia paludicola] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K + + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTGKAPKQKSGFNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD + R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVSLQLLEMRLDNTILRLGMAPTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + L + +P +++ + ++ + +I + +LK + Sbjct: 135 TIRDKQKSQSVITRNINLFQNSKIPSHLTFDPIKLLGSINQIINREWINLK-------IN 187 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 188 ELLVVEYYSR 197 >gi|222103510|gb|ACM44284.1| small ribosomal protein subunit 4 [Ptilium crista-castrensis] Length = 203 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|99640060|emb|CAJ45149.1| putative ribosomal protein S4 gene [Sphaeropteris tomentosissima] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|62766389|gb|AAX99324.1| rpS4 [Botrychium simplex] Length = 191 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 8/167 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD I++R Sbjct: 27 KISQYCIRLEAKQRLRFNYG-LTERQLLKHVRIARRARGSTGQVSLQSLEMRLDNILFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAE 161 PTI ARQ VNHRH+LVN R V+I SY C+ DVI + + S+ L S E Sbjct: 86 GMSPTIPGARQLVNHRHILVNDRVVDIPSYHCEPNDVITARDWKNSRDLIGGNVGSS-GE 144 Query: 162 RDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + +S++ D FV + + + LVVE+YSR Sbjct: 145 GGIPNHLSLSLSEDEKPKGFVNRIIDRESIGLKI--NELLVVEYYSR 189 >gi|32401858|gb|AAP80917.1| small ribosomal protein 4 [Araucaria heterophylla] Length = 209 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 5 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 63 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVNGR V+ SYRC DVI +K + + Sbjct: 64 QLLEMRLDNIIFRLGMALTIPGARQLVCHRHILVNGRIVDKPSYRCNPYDVITIKDQQR 122 >gi|51458150|gb|AAU03424.1| ribosomal protein small subunit 4 [Asplenium heterochroum] Length = 189 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A +RG T + LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARGTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ ++ ++ S Sbjct: 81 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRATSCNALGNKSL 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|328541088|gb|AEB21768.1| ribosomal protein S4 [Zoopsis setulosa] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 18/203 (8%) Query: 10 KIDRRIGE-----NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 K+ RR+G + +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KVIRRLGTLPGLTSKTAKPKSNYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG- 57 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ +N Sbjct: 58 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHGHIAIN 117 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD+I ++ K K + +++ L + +P +++ + + + I Sbjct: 118 YNIVDIPSYNCEPGDIITIRDKQKSQSVIIKNINLFQNLKIPSHLTFDSIKLCGS---IN 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 QTINREWINLKINELLVVEYYSR 197 >gi|254525444|ref|ZP_05137496.1| ribosomal protein S4 [Prochlorococcus marinus str. MIT 9202] gi|221536868|gb|EEE39321.1| ribosomal protein S4 [Prochlorococcus marinus str. MIT 9202] Length = 188 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 10/180 (5%) Query: 30 RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 +S PG HGQ R+ K S + ++L KQK++ YG +SEK+ K+A G T NL+ Sbjct: 14 KSNPPGQHGQARR-KRSEYAIRLEEKQKLRFNYG-VSEKQLVRYVKKARAQEGSTGTNLL 71 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK--S 147 LE+RLD + +R F TI +RQ VNH HV VNG+ ++I Y+CK GDVI +K+ S Sbjct: 72 RLLENRLDNVCFRLGFGGTIPGSRQLVNHGHVTVNGKVLDIAGYQCKSGDVIGIKENKAS 131 Query: 148 KQLA-SVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 K+L +E LA +VP ++ ++ + +I + + LVVE+YSR Sbjct: 132 KKLVEGNIEFPGLA--NVPPHLDLDKPKLTG---KINGKCDREWVALEINELLVVEYYSR 186 >gi|46486542|gb|AAS98707.1| ribosomal protein subunit 4 [Rhytidiadelphus triquetrus] gi|80974182|gb|ABB53784.1| small ribosomal subunit protein 4 [Rhytidiadelphus triquetrus] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SYRCK D I +K QKS+ + S Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSETIIS 147 >gi|67035825|gb|AAY62843.1| small ribosomal protein subunit 4 [Acanthorrhynchium papillatum] Length = 185 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 83 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 127 >gi|118724447|gb|ABL10797.1| ribosomal protein small subunit 4 [Doryopteris triphylla] Length = 195 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 6/173 (3%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q K S F ++L AKQ+++ YG ++E++ + + A R++G T + LE R Sbjct: 25 LGDQSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTKGSTGQVPLQLLEMR 83 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 84 LDNVIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-K 142 Query: 156 ASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 GKSLGRDEVPDHLTVSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|67035783|gb|AAY62822.1| small ribosomal protein subunit 4 [Dendroalsia abietina] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEISLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + A + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRTSEAIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|63191651|gb|AAY34787.1| small ribosomal protein subunit 4 [Pseudoleskeella tectorum] Length = 199 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQK 141 >gi|62288928|sp|P69634|RR4_ARUJA RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288943|sp|P69649|RR4_PHYFL RecName: Full=30S ribosomal protein S4, chloroplastic gi|439916|emb|CAA82428.1| ribosomal protein S4 [Pseudosasa japonica] gi|439958|emb|CAA82448.1| ribosomal protein S4 [Phyllostachys flexuosa] Length = 196 Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR V+I S+RCK D+I K Q+SK+L + +A D +P++++++ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLIQ----NSIASSDPGKLPKHLTID 167 >gi|89147826|gb|ABD62761.1| ribosomal protein 4 [Gyrothyra underwoodiana] Length = 197 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 14 PGLTSKILKSKSSYIDRSSSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVYIARKTK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNNIVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 133 TVKNKQKSQSIITKNINLFQKLKIPSHLTFDPVELQGS---VNQMINREWVNLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|294337204|emb|CAQ52751.1| ribosomal protein S4 [Meteorium polytrichum] Length = 155 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 88/161 (54%), Gaps = 13/161 (8%) Query: 51 QLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIF 110 +L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R PTI Sbjct: 1 RLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIP 59 Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE--- 166 ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ +P Sbjct: 60 GARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLT 119 Query: 167 YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 Y S+ +V + R LK + LVVE+YSR Sbjct: 120 YSSLEKKGLVTQILDRESIGLK-------INELLVVEYYSR 153 >gi|311901198|gb|ADQ13149.1| small ribosomal protein 4 [Nephrolepis lauterbachii] Length = 178 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKFPGKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEGNKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|237797456|ref|ZP_04585917.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020306|gb|EGI00363.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 151 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 79/133 (59%), Gaps = 4/133 (3%) Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 K+A +G T NL+ LE RLD +VYR F T +RQ V+H+ V VNG++VN+ SY+ Sbjct: 22 KKAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLVSHKSVSVNGKTVNVPSYQ 81 Query: 135 CKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPV 193 + GDV+ +++K+K +++A L A+R E++ V+ + F +P+ D+ + Sbjct: 82 VRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKKSGVFKNVPAR-SDLSADI 140 Query: 194 IMQPNLVVEFYSR 206 +L+VE YS+ Sbjct: 141 --NESLIVELYSK 151 >gi|328541170|gb|AEB21809.1| ribosomal protein S4 [Telaranea plumulosa] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNNIVDIPSYNCESGDLI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---IDQTINREWVNLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|224552892|gb|ACN54684.1| small ribosomal protein 4 [Araucaria araucana] Length = 216 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVNGR V+ SYRC DVI +K + + Sbjct: 71 QLLEMRLDNIIFRLGMALTIPGARQLVCHRHILVNGRIVDKPSYRCNPYDVITIKDQQR 129 >gi|141446747|gb|ABO87580.1| ribosomal protein S4 [Elymus repens] Length = 99 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 1/99 (1%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++G T L+ LE RLD I++R Sbjct: 2 GKKEQYRIRLQEKQKLRFHYG-LTERRLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFR 60 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 TI ARQ VNHRH+LVNGR VNI S+RCK D+I Sbjct: 61 LGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDII 99 >gi|56070101|gb|AAV70711.1| ribosomal protein 4 [Ephedra chilensis] Length = 162 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 1 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 60 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 119 Query: 162 ---RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 VP Y++ N +I + KD+ + ++ LV+E+Y Sbjct: 120 KNRNRVPHYLTFNLSQNKGIVNKIIDT-KDL--QLXIKEMLVIEYY 162 >gi|52788810|gb|AAU87379.1| ribosomal protein small subunit 4 [Monachosorum henryi] Length = 197 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++ Sbjct: 35 KISQFCVRLEAKQRLRLNYG-LTERQLLRYVRIARKTRGSTGQVLLQLLEMRLDNVIFHL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYR K D+I + + ++ + S + ++ Sbjct: 94 GMASTIPAARQLVNHRHILVNYRVVDIPSYRRKPKDIITARNRPTSYNALRDQSLVGDK- 152 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ N ++ + V + LVVE+YSR Sbjct: 153 IPDHLTLSLSEGNRPTGLANRIANRESVNLNI--NELLVVEYYSR 195 >gi|162423608|gb|ABX89576.1| small ribosomal protein 4 [Araucaria cunninghamii] Length = 216 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVNGR V+ SYRC DVI +K + + Sbjct: 71 QLLEMRLDNIIFRLGMALTIPGARQLVCHRHILVNGRIVDKPSYRCNPYDVITIKDQQR 129 >gi|83416510|gb|ABC18275.1| small ribosomal subunit protein 4 [Rhytidiadelphus squarrosus] Length = 198 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKK 140 >gi|49182758|gb|AAT57841.1| small ribosomal protein [Mastigophora diclados] Length = 188 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 5 PGLTSKTLKPKSSYIDRSSSTKKVSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAK 63 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ G++I Sbjct: 64 GSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNDIVDIPSYNCEPGNII 123 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + + + +I + +LK + Sbjct: 124 TIKNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGSINQIINREWINLK-------IN 176 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 177 ELLVVEYYSR 186 >gi|162423610|gb|ABX89577.1| small ribosomal protein 4 [Wollemia nobilis] Length = 216 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVNGR V+ SYRC DVI +K + + Sbjct: 71 QLLEMRLDNIIFRLGMTLTIPGARQLVCHRHILVNGRIVDKPSYRCNPYDVITIKDQQR 129 >gi|66990668|emb|CAI29112.1| small ribosomal protein 4 [Plagiochila teysmannii] Length = 202 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K A V + + + +P +++ + + + + + + + LV Sbjct: 138 TIGNKQKSRAIVTKNITSFQKLKIPSHLTFDSTQLRGS---VNQMINREWIDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|67035927|gb|AAY62890.1| small ribosomal protein subunit 4 [Sanionia orthothecioides] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNNCIVDIPSYRCKPQDFITIKNQRK 141 >gi|328541136|gb|AEB21792.1| ribosomal protein S4 [Telaranea meridiana] Length = 177 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PK N RS Q R ++L KQK++ +YG ++E++ + A +++ Sbjct: 1 KPKXXYNDRSTSNKXVSQYR--------IRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 51 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 52 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCESGDVI 111 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 112 TIKDKQKSRSIITKNINLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 168 Query: 201 VEFYSR 206 VE+YSR Sbjct: 169 VEYYSR 174 >gi|212004163|gb|ACJ15390.1| Rps4 [Pellaea breweri] Length = 187 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|118724323|gb|ABL10735.1| ribosomal protein small subunit 4 [Pellaea breweri] gi|212004165|gb|ACJ15391.1| Rps4 [Pellaea breweri] Length = 188 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|67035990|gb|AAY62921.1| small ribosomal protein subunit 4 [Dicladiella cubensis] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|67035966|gb|AAY62909.1| small ribosomal protein subunit 4 [Porotrichodendron nitidum] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 141 >gi|67035917|gb|AAY62885.1| small ribosomal protein subunit 4 [Campyliadelphus stellatus] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|294337164|emb|CAQ52732.1| ribosomal protein S4 [Homaliodendron exiguum] gi|294337166|emb|CAQ52733.1| ribosomal protein S4 [Homaliodendron microdendron] gi|294337220|emb|CAQ52759.1| ribosomal protein S4 [Neckeropsis calcicola] gi|294337222|emb|CAQ52760.1| ribosomal protein S4 [Neckeropsis calcutensis] Length = 202 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|78102699|gb|ABB21563.1| small ribosomal protein 4 [Plagiochila nobilis] Length = 189 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ G++I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINDDIVDIPSYNCEPGEII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNM 175 ++ + K +++ + + + VP +++ + + Sbjct: 131 TIRNRQKSQSAITKNINSFQKLKVPSHLTFDSTQL 165 >gi|67035986|gb|AAY62919.1| small ribosomal protein subunit 4 [Meteoriopsis reclinata] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|67035823|gb|AAY62842.1| small ribosomal protein subunit 4 [Wijkia extenuata] Length = 199 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|328541118|gb|AEB21783.1| ribosomal protein S4 [Acromastigum anisostomum] Length = 197 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKSKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNNIVDIPSYNCELGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + +I + + + L+ Sbjct: 133 TIRDKEKSQSIITKNINLFQNLKIPSHLTFDLIKLCGSINQI---VNRESIDLKINELLI 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|222103426|gb|ACM44242.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] Length = 203 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|46811012|gb|AAT01824.1| small ribosomal protein 4 [Hattorianthus erimonus] Length = 180 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 80/131 (61%), Gaps = 6/131 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K + + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD IV R Sbjct: 19 KITQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARSAKGSTGQILLQLLEMRLDNIVSRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLA 160 PTI ARQ VNHRH+++N +V+I SY C+ DVI ++ + + +A ++ SQ Sbjct: 78 GMAPTIPGARQLVNHRHIVINDSTVDIPSYSCEPRDVITIRDRQESRLIIARNMDLSQ-- 135 Query: 161 ERDVPEYISVN 171 ER +P +++++ Sbjct: 136 ERKIPNHLTLD 146 >gi|118724495|gb|ABL10821.1| ribosomal protein small subunit 4 [Cheilanthes wrightii] Length = 195 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARITRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + +V + Sbjct: 87 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRCKPKDIITIRNRPTSYNAV-KGES 145 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 146 FGRDEVPDHLTL 157 >gi|48527397|gb|AAT45831.1| small ribosomal protein 4 [Plagiochila patriciae] Length = 178 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSSLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQALLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKQK 144 >gi|67036120|gb|AAY62986.1| small ribosomal protein subunit 4 [Taxiphyllum deplanatum] Length = 194 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 136 >gi|225549562|ref|ZP_03770528.1| ribosomal protein S4 [Borrelia burgdorferi 118a] gi|225369839|gb|EEG99286.1| ribosomal protein S4 [Borrelia burgdorferi 118a] Length = 147 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 8/148 (5%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG +SE++ + FKEA + G T NL+S LE R+D +VYRA F + ARQ V+H + Sbjct: 3 YG-VSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGII 61 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKS---KQLASVLEASQLAERDVPEYISVNHDNMVAT 178 ++NGR V I S + D I++K+K K + S +E + + R++P +I VN D++ Sbjct: 62 ILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTS-SLRNLPTWIEVNADDLNIK 120 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS +D P + +VVE+YS+ Sbjct: 121 VKHAPS--RD-EIPTLANEQMVVEYYSK 145 >gi|118724485|gb|ABL10816.1| ribosomal protein small subunit 4 [Cheilanthes parviloba] Length = 193 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 26 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRVARRTRGSTGQVPLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 85 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAT-KIKS 143 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + + V ++ + V + LVVE++SR Sbjct: 144 LGRDEVPDHLTLSISKTSELTGLVNHMANRESVNLDI--NELLVVEYHSR 191 >gi|83416504|gb|ABC18272.1| small ribosomal subunit protein 4 [Homalothecium sericeum] Length = 196 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 138 >gi|23477332|gb|AAN34642.1| ribosomal protein small subunit 4 [Woodwardia martinezii] Length = 185 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD ++ R Sbjct: 23 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVISRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V++ SYRCK D+I V+ + + L + Sbjct: 82 GMASTIPAARQLVSHRHILVNNRIVDVPSYRCKPRDIITVRNRPTS-CNALRGESPGGSE 140 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ S++ N V ++ + V + LVVE+YSR Sbjct: 141 TPDHLTASLSEGNRPTGLVNRIANRESVNLNI--NELLVVEYYSR 183 >gi|294337150|emb|CAQ52725.1| ribosomal protein S4 [Homalia glabella] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + +L ++ +P Y S+ +V Sbjct: 117 ILVNDCMVDIPSYRCKPQDFITIKDQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRGSIGLK-------INELLVVEYYSR 200 >gi|225621051|ref|YP_002722309.1| 30S ribosomal protein S4 [Brachyspira hyodysenteriae WA1] gi|225215871|gb|ACN84605.1| 30S ribosomal protein S4 [Brachyspira hyodysenteriae WA1] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 8/175 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 GP R+ + S +G+Q+R KQK+K+ YG + EK+FR+ + EA R G + NL+ L Sbjct: 22 GPA---NRKMKQLSEYGIQMREKQKVKRIYG-VLEKQFRNYYHEAIRVAGVSGENLLRLL 77 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD +VYR + ARQFV H + VNG+ + I SY K GD + ++ +A Sbjct: 78 ELRLDNVVYRLGLAKSRNQARQFVAHGFISVNGKRMTIPSYCVKVGDKVSFTERGNAVAE 137 Query: 153 VLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + L VP ++S++ N V +P + + YP+ Q L++E+YS+ Sbjct: 138 VKTIVEGLKSEYVPAWLSLDLSNKTGEIVTLPIR-EHIEYPINEQ--LIIEYYSK 189 >gi|62288925|sp|P69631|RR4_ANDIS RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288947|sp|P69653|RR4_TRIDA RecName: Full=30S ribosomal protein S4, chloroplastic gi|439914|emb|CAA82426.1| ribosomal protein S4 [Bothriochloa ischaemum] gi|439970|emb|CAA82452.1| ribosomal protein S4 [Tripsacum dactyloides] Length = 196 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR V+I S+RCK D+I K Q+SK+L AS Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNYIASSDP 157 Query: 161 ERDVPEYISVN 171 + +P++++V+ Sbjct: 158 GK-LPKHLTVD 167 >gi|37992415|gb|AAR06386.1| small ribosomal protein 4 [Aerobryopsis longissima] gi|37992417|gb|AAR06387.1| small ribosomal protein 4 [Aerobryopsis wallichii] Length = 192 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 134 >gi|86438914|emb|CAJ55429.1| small ribosomal protein 4 [Plagiochila pleurata] Length = 135 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 13/125 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGXXPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQK 146 ++ K Sbjct: 131 TIRNK 135 >gi|99639901|emb|CAJ45121.1| putative ribosomal protein S4 gene [Alsophila bryophila] gi|99639957|emb|CAJ45128.1| putative ribosomal protein S4 gene [Cibotium glaucum] gi|99639962|emb|CAJ45129.1| putative ribosomal protein S4 gene [Cibotium nealiae] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 16/204 (7%) Query: 10 KIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K+ RR+ + L G+ +P TR Q K S F ++L AKQ+++ YG ++E Sbjct: 3 KVIRRLKDLPGLTGKASNPGETRVAA----DQSTSRKISQFCVRLEAKQRLRFNYG-LTE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + R + + A +++G T + LE RLD I++ + TI AARQ VNHRH++VN R Sbjct: 58 RLLRYV-RIARKTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVN--HDNMVATFVRI 182 V++ SYRCK D+I V+ + L S + S ++ +P++++++ N V Sbjct: 117 VDVPSYRCKPKDIITVRNRPTSYNGLRSGINESSRGDK-IPDHLTLSLLEGNRPKGLVNR 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 176 IANRESIDLNI--NELLVVEYYSR 197 >gi|37992449|gb|AAR06403.1| small ribosomal protein 4 [Camptochaete pulvinata] Length = 157 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 5/158 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 ++L KQK++ +YG I+E++ + + A R++G T L+ E RLD +++R PTI Sbjct: 2 IRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLPEMRLDNVIFRLGMAPTI 60 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYI 168 ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ +P ++ Sbjct: 61 PGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHL 120 Query: 169 SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + N +I L + + LVVE+YSR Sbjct: 121 TYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 155 >gi|37992429|gb|AAR06393.1| small ribosomal protein 4 [Barbellopsis trichophora] Length = 187 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 129 >gi|548872|sp|P36466|RR4_MELUN RecName: Full=30S ribosomal protein S4, chloroplastic gi|439956|emb|CAA82445.1| ribosomal protein S4 [Melica uniflora] Length = 196 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 10/134 (7%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG + R ++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYGLTERQLLRYVY-IAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR VNI S+RCK D+I K Q+SK L + +A Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQ----NSIA 153 Query: 161 ERD---VPEYISVN 171 D +P++++++ Sbjct: 154 SSDPGKLPKHLTID 167 >gi|42718090|gb|AAS38467.1| rps4 [Tayloria callophylla] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ + G I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHXG-ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH H+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMSPTIPGARQLVNHXHILVNDHXVDIPSYRCKPQDFITIKNRQKSQAIINKNIEFHQKY 146 Query: 163 DVPEYI---SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ +V + R LK + LVVE+YSR Sbjct: 147 KIPTHLIYNSLKKQGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|37992661|gb|AAR06509.1| small ribosomal protein 4 [Pseudotrachypus martinicensis] Length = 187 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 129 >gi|37992411|gb|AAR06384.1| small ribosomal protein 4 [Aerobryidium aureonitens] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 131 >gi|37992593|gb|AAR06475.1| small ribosomal protein 4 [Meteoriopsis reclinata] gi|67035996|gb|AAY62924.1| small ribosomal protein subunit 4 [Barbellopsis trichophora] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 136 >gi|7576567|gb|AAF63896.1| ribosomal protein system 4 [Rhytidiadelphus squarrosus] Length = 188 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQKK 131 >gi|311901182|gb|ADQ13141.1| small ribosomal protein 4 [Nephrolepis cordifolia] gi|311901184|gb|ADQ13142.1| small ribosomal protein 4 [Nephrolepis cordifolia] gi|311901190|gb|ADQ13145.1| small ribosomal protein 4 [Nephrolepis exaltata] Length = 178 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 16 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDNVIFHL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L A + Sbjct: 75 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNRPTSY-NALRAKFPGKDK 133 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++ IS++ N V ++ + V + LVVE+YSR Sbjct: 134 TPDHLTISLSEANKPTGLVNSIANRESVNLNI--NELLVVEYYSR 176 >gi|222103482|gb|ACM44270.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKSQRK 145 >gi|49182675|gb|AAT57800.1| small ribosomal protein [Balantiopsis diplophylla] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDNI 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ + K + + + L + +P +++ + + FV ++ + + LV Sbjct: 131 TVRNRQKSQSIITKNINLFQNSKIPSHLTFDSTKLRG-FVN--QTINRELINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37992659|gb|AAR06508.1| small ribosomal protein 4 [Pseudospiridentopsis horrida] Length = 186 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 128 >gi|37992403|gb|AAR06380.1| small ribosomal protein 4 [Achrophyllum dentatum] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGDILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMSPTIPGARQLINHRHILVNDCMVDIPSYRCKPRDFITIKNQRK 136 >gi|320455046|dbj|BAJ65670.1| small ribosomal protein 4 [Metzgeria nudifrons] Length = 185 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 14/151 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVN 171 +K + + ++++E + L + +P +++ + Sbjct: 131 TIKNQERYRSTIMERLNSLQKPVIPNHLAFD 161 >gi|81295643|gb|ABB70115.1| ribosomal protein subunit 4 [Ombronesus stuvensis] Length = 185 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVSLQLLEMRLDNILFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I ++ K Sbjct: 83 GMAPTIPGARQLVNHRHILVNNCIVNIPSYRCKPQDFIIIENK 125 >gi|49182684|gb|AAT57804.1| small ribosomal protein [Calypogeia muelleriana] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 33/194 (17%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A R + Sbjct: 12 PGLTSKVLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRVK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI------ 194 V++K K + + + + ++ +P ++S + P+ L+ I Sbjct: 131 TVREKQKSQSIITKNINVFQKLKIPSHLSFD-----------PTELRGFVNQTINREWID 179 Query: 195 --MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 180 LKINELLVVEYYSR 193 >gi|37992535|gb|AAR06446.1| small ribosomal protein 4 [Glyphothecium sciuroides] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNE 134 >gi|67036014|gb|AAY62933.1| small ribosomal protein subunit 4 [Neodolichomitra yunnanensis] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNMEFH--- 153 Query: 164 VPEYISVNHDNMVATFVR----IPSSLKDVPYPVIMQPNLVVEFYSR 206 P+Y NH + +F+ + L + + LVVE+YSR Sbjct: 154 -PKYKIPNH--LTYSFLEKKGLVNQILDRESIGLKINELLVVEYYSR 197 >gi|78102659|gb|ABB21543.1| small ribosomal protein 4 [Plagiochila flabelliflora] Length = 162 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRXARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRSIVT 143 >gi|37992603|gb|AAR06480.1| small ribosomal protein 4 [Meteoriopsis reclinata] gi|37992607|gb|AAR06482.1| small ribosomal protein 4 [Neodicladiella pendula] Length = 190 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 132 >gi|62288944|sp|P69650|RR4_SETVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288948|sp|P69654|RR4_TRIRO RecName: Full=30S ribosomal protein S4, chloroplastic gi|439968|emb|CAA82449.1| ribosomal protein S4 [Setaria viridis] gi|440142|emb|CAA82458.1| ribosomal protein S4 [Melinis repens] Length = 196 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 10/134 (7%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVNGR V+I S+RCK D+I K Q+SK+L + +A Sbjct: 98 LGMASTIPGARQLVNHRHILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQ----NSIA 153 Query: 161 ERD---VPEYISVN 171 D +P++++V+ Sbjct: 154 SSDPGKLPKHLTVD 167 >gi|289576416|dbj|BAI77782.1| ribosomal protein small subunit 4 [Hymenophyllum exsertum] Length = 187 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD IV+++ Sbjct: 25 KVSQFCVRLEAKQRLRFNYGS-TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNIVFQS 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + Sbjct: 84 GMSATIPAARQLVNHRHILVNNHIVDIPSYRCKPKDLITIRNR 126 >gi|118724463|gb|ABL10805.1| ribosomal protein small subunit 4 [Cheilanthes distans] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 77/127 (60%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVSLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + L + Sbjct: 92 GMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKSLGRDE 150 Query: 164 VPEYISV 170 VP+++++ Sbjct: 151 VPDHLTL 157 >gi|115350017|ref|YP_764373.1| ribosomal protein S4 [Stigeoclonium helveticum] gi|122165174|sp|Q06SJ3|RR4_STIHE RecName: Full=30S ribosomal protein S4, chloroplastic gi|98990231|gb|ABF60198.1| ribosomal protein S4 [Stigeoclonium helveticum] Length = 2922 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 25/164 (15%) Query: 1 MSKRESSKHKIDRRIGENLWG--------RPKSPVNTRSYGP------GLHGQRR--KSK 44 MS+ + +I RR+G L G +P +PVN +GP G HG+ + K K Sbjct: 1 MSRYLGPRLRITRRLGH-LSGLTRKKPAFKPLNPVN--PFGPRKIIPPGEHGRNKSFKKK 57 Query: 45 P----SY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTI 99 P Y + ++L+ KQ+++ +YG ++E++ ++A + +G T L+ LE RLD I Sbjct: 58 PYESCEYDYLIRLKLKQRLRFHYG-LTERQLVRYVQQAKKIKGSTGRVLLRLLEMRLDNI 116 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 V+R PTI AARQ ++H H+L+N + V I SY+C+ D+I V Sbjct: 117 VFRLHMAPTIKAARQLISHGHILINKKKVTIPSYQCEPKDIITV 160 >gi|41323137|gb|AAR99798.1| small ribosomal protein 4 [Plagiochila superba] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKQK 144 >gi|328541098|gb|AEB21773.1| ribosomal protein S4 [Bazzania pearsonii] Length = 154 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 85/153 (55%), Gaps = 5/153 (3%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ Sbjct: 4 KQKLRFHYG-LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQ 62 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 VNH+HV +N V+I SY CK GD+I ++ K K + + + L + +P +++ + Sbjct: 63 LVNHKHVAINSNIVDIPSYNCKPGDIITIRDKQKSXSIITKNINLFQNLKIPSHLTFDSI 122 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + I ++ + + LVVE+YSR Sbjct: 123 KLCGS---INQTINREWINLKINELLVVEYYSR 152 >gi|37992413|gb|AAR06385.1| small ribosomal protein 4 [Aerobryopsis capensis] Length = 188 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 130 >gi|18920741|gb|AAL82415.1| ribosomal protein system 4 [Herzogiella seligeri] Length = 193 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 91 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 135 >gi|294337224|emb|CAQ52761.1| ribosomal protein S4 [Neckeropsis nitidula] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRK 144 >gi|49182768|gb|AAT57846.1| small ribosomal protein [Nowellia curvifolia] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLSNKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N ++I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISMNNNIIDIPSYNCQPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + + L ++ P +++ N + + + + + + LV Sbjct: 131 TIRNKLESRSMITKNINLFQKLKTPSHLTFNLTELQGS---VNQMINREWVNLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37992711|gb|AAR06534.1| small ribosomal protein 4 [Trachypodopsis formosana] Length = 186 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFISIKNQRK 128 >gi|313573576|emb|CAT03210.1| ribosomal protein S4 [Chileobryon callicostelloides] Length = 196 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 138 >gi|118724491|gb|ABL10819.1| ribosomal protein small subunit 4 [Cheilanthes viridis var. glauca] Length = 188 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 80 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 138 Query: 159 LAERDVPEYISV 170 +VP+Y+++ Sbjct: 139 FGRDEVPDYLTL 150 >gi|66990680|emb|CAI29118.1| small ribosomal protein 4 [Plagiochila boryana] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKQK 144 >gi|42556460|gb|AAS19825.1| small ribosomal protein 4 [Metzgeria conjugata] Length = 183 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 19/186 (10%) Query: 35 GLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 GL + KSK SY + ++L KQK++ +YG ++E++ + A +++G Sbjct: 1 GLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTKG 59 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 60 STGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDIIT 119 Query: 143 VKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNLV 200 +K + + + ++E + L + +P ++ + ++ + R I D+ + LV Sbjct: 120 IKNQERYRSIIMERLNSLQKPGIPNHLVFDSTKLIGSVNRMINREWIDLK----INELLV 175 Query: 201 VEFYSR 206 VE+YSR Sbjct: 176 VEYYSR 181 >gi|212004161|gb|ACJ15389.1| Rps4 [Pellaea breweri] Length = 187 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|118724459|gb|ABL10803.1| ribosomal protein small subunit 4 [Cheilanthes buchtienii] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTS-NNAAKGKS 145 Query: 159 LAERDVPEYISV 170 L +VP+++++ Sbjct: 146 LGRDEVPDHLTL 157 >gi|99639895|emb|CAJ45113.1| putative ribosomal protein S4 gene [Cyathea australis] Length = 196 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 6/128 (4%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 11 LTGKTSNPGETRIAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 65 KTKGSTGQVPLQLLEMRLDNIIFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 124 Query: 139 DVIEVKQK 146 D+I V+ + Sbjct: 125 DIITVRNR 132 >gi|80974156|gb|ABB53771.1| small ribosomal subunit protein 4 [Garovaglia subelegans] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 39 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRLDNIIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKY 157 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 158 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 198 >gi|80974162|gb|ABB53774.1| small ribosomal subunit protein 4 [Glyphothecium sciuroides] Length = 198 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNE 138 >gi|42556502|gb|AAS19846.1| small ribosomal protein 4 [Schistochila appendiculata] Length = 191 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 ++ K K + + L ++ P NH +T +R + K + ++ N Sbjct: 127 GIQNKQKSQSMITRNLGLLQKLKTP-----NHLTFDSTQLRGLVNQKVHREFINLKINEL 181 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 182 LVVEYYSR 189 >gi|222103504|gb|ACM44281.1| small ribosomal protein subunit 4 [Amblystegium serpens] Length = 203 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 42 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 100 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 101 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 145 >gi|18920729|gb|AAL82409.1| ribosomal protein system 4 [Amblystegium fluviatile] Length = 197 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 139 >gi|7576559|gb|AAF63892.1| ribosomal protein system 4 [Bryhnia novae-angliae] Length = 188 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 131 >gi|67036044|gb|AAY62948.1| small ribosomal protein subunit 4 [Trachybryum megaptilum] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|63101011|gb|AAY33130.1| small ribosomal protein 4 [Climacium americanum] Length = 200 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 39 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 98 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 157 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 158 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 198 >gi|222103544|gb|ACM44301.1| small ribosomal protein subunit 4 [Climacium japonicum] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLIYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|46811052|gb|AAT01844.1| small ribosomal protein 4 [Schistochila appendiculata] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 9 PGLTSKILKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 68 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 127 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 ++ K K + + L ++ P NH +T +R + K + ++ N Sbjct: 128 GIQNKQKSQSMITRNLGLLQKLKTP-----NHLTFDSTQLRGLVNQKVHREFINLKINEL 182 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 183 LVVEYYSR 190 >gi|45271084|gb|AAS56927.1| ribosomal protein small subunit 4 [Saccoloma inaequale] Length = 174 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 20/180 (11%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 ++ Q K S F ++L AKQ+++ YG ++E++ + + A +++G T + LE R Sbjct: 4 VNDQSGSKKISQFCVRLEAKQRLRFSYG-LTERQPLNYVRIARKTKGSTGQVSLQLLEMR 62 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 LD +++ TI ARQ VNHRH+LVN R V+I SYRC+ D+I V+ + ++VL Sbjct: 63 LDNVIFHPGVASTIPCARQLVNHRHILVNNRIVDIPSYRCEPKDIITVRNRPTS-SNVLR 121 Query: 156 ASQLAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++++ N +A + ++ ++ LVVE+YSR Sbjct: 122 NASFGRDKIPDHLTLSLTEGSRPTGLVNRIANRESVDLNINEL---------LVVEYYSR 172 >gi|47606900|gb|AAT36370.1| ribosomal protein subunit 4 [Glyphothecium sciuroides] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNE 139 >gi|16565378|gb|AAL26204.1|AF313603_1 small ribosomal protein 4 [Equisetum bogotense] Length = 190 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S + ++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 21 QSIQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 I++R VPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + Sbjct: 80 ILFRLGVVPTIPSARQLINHRHILVNDRIVDVPSFHCKPKDIITI 124 >gi|227345113|gb|ACP28109.1| small ribosomal protein 4 [Archeophylla schusteri] Length = 191 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLISKTLKLKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C GDVI Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNFIVDIPSYNCAPGDVI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L + ++P +++++ + + I ++ + + LV Sbjct: 127 TVRNKQKSRSIITKNINLLQNSEIPNHLTLDSTQLRGS---INQTINREWIHLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|50299385|gb|AAT73597.1| small ribosomal protein 4 [Plagiochila deflexa] Length = 183 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASV 153 + + K ++V Sbjct: 138 TIGNEQKSRSTV 149 >gi|42405290|gb|AAS13471.1| rps4 small ribosomal protein [Achrophyllum quadrifarium] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + + +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRISRKAKGSTGDILLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMSPTIPGARQLINHRHILVNDCIVDIPSYRCKPRDFITIKNRRK 136 >gi|7576597|gb|AAF63911.1| ribosomal protein system 4 [Campylium chrysophyllum] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 132 >gi|7576549|gb|AAF63887.1| ribosomal protein system 4 [Thelia lescurii] Length = 190 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETVISKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|67035901|gb|AAY62877.1| small ribosomal protein subunit 4 [Vittia pachyloma] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|63101023|gb|AAY33136.1| small ribosomal protein 4 [Hondaella brachytheciella] Length = 184 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 23 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 81 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 82 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 126 >gi|118724493|gb|ABL10820.1| ribosomal protein small subunit 4 [Cheilanthes viridis] Length = 191 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 83 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 141 Query: 159 LAERDVPEYISV 170 +VP+Y+++ Sbjct: 142 FGRDEVPDYLTL 153 >gi|284468551|gb|ADB90336.1| ribosomal protein subunit 4 [Homalothecium nuttallii] Length = 187 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 129 >gi|146261553|gb|ABQ15086.1| ribosomal protein S4 [Choristylis rhamnoides] Length = 162 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++ ++ + A +++G T L+ LE LD I++R Sbjct: 1 KRSQYRIRLXXKQKLRFHYG-LTXRQLLKYVRIAGKAKGSTGQVLLQLLEMXLDNIJFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLA 160 TI ARQ VNH H+LVNGR V+I SYRCK D+I + + K A + L++S Sbjct: 60 GMASTIPGARQLVNHXHILVNGRIVDIPSYRCKPRDIITARDEQKSRAXIQNYLDSS--P 117 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+++++ H V K V + LVVE+YSR Sbjct: 118 HEELPKHLTL-HPFQYKGLVNQIIDTKWVGLKI--NELLVVEYYSR 160 >gi|80974158|gb|ABB53772.1| small ribosomal subunit protein 4 [Garovaglia zantenii] Length = 198 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD I++R Sbjct: 37 KISQYRVRLEEKQKLRFHYG-ITERQLPNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNE 138 >gi|67036036|gb|AAY62944.1| small ribosomal protein subunit 4 [Bryhnia novae-angliae] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 131 >gi|170516211|gb|ACB15107.1| small ribosomal protein 4 [Saxegothaea conspicua] Length = 216 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A ++G T L+ Sbjct: 12 PGLTKYRRVDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARTAKGPTGQVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVNG V+I SY CK DV+ +K + + Sbjct: 71 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGCMVDIPSYPCKPKDVVTIKDQQR 129 >gi|78102621|gb|ABB21524.1| small ribosomal protein 4 [Acrochila biserialis] Length = 174 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK + +YG ++E++ + A +++ Sbjct: 1 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKXRFHYG-LTERQLLKYMRIARKAK 59 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ G++I Sbjct: 60 GSTGQVLXQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNNIVDIPSYNCEPGNII 119 Query: 142 EVKQKSK 148 +K K K Sbjct: 120 TIKNKQK 126 >gi|41323099|gb|AAR99779.1| small ribosomal protein 4 [Plagiochila cucullifolia var. anomala] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSALNKKVFQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKQK 144 >gi|37992687|gb|AAR06522.1| small ribosomal protein 4 [Squamidium macrocarpum] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 87 GMAPTISGARQLVNHRHILVNECIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|37992731|gb|AAR06544.1| small ribosomal protein 4 [Zelometeorium patulum] Length = 195 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 152 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 153 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 193 >gi|32401856|gb|AAP80916.1| small ribosomal protein 4 [Prumnopitys taxifolia] Length = 212 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A ++G T L+ Sbjct: 8 PGLTKYRRVDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARTAKGPTGQVLL 66 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ VNHRH+LVNG V+I SY CK DV+ +K + + Sbjct: 67 QLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGCMVDIPSYPCKPKDVVTIKDQQR 125 >gi|320455034|dbj|BAJ65664.1| small ribosomal protein 4 [Metzgeria furcata] Length = 185 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 14/158 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVAT 178 +K + + + ++E + L + +P +++ + + + Sbjct: 131 TIKNQERYRSIIMERFNSLQKPGIPNHLAFDSTKFIGS 168 >gi|306773472|emb|CBJ55312.1| putative ribosomal protein small subunit 4 [Cyathea senilis] Length = 163 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 12 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 65 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R+V++ SYRCK D+I V+ Sbjct: 66 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRTVDVPSYRCKPKDIITVE 116 >gi|78102655|gb|ABB21541.1| small ribosomal protein 4 [Plagiochila fasciculata] Length = 172 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDMVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 AIRNKEK 137 >gi|7576583|gb|AAF63904.1| ribosomal protein system 4 [Schwetschkeopsis fabronia] Length = 188 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|67035899|gb|AAY62876.1| small ribosomal protein subunit 4 [Eriodon conostomus] gi|67035903|gb|AAY62878.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] gi|67035909|gb|AAY62881.1| small ribosomal protein subunit 4 [Cratoneuropsis relaxa] gi|67035911|gb|AAY62882.1| small ribosomal protein subunit 4 [Hypnobartlettia fontana] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|67035959|gb|AAY62906.1| small ribosomal protein subunit 4 [Echinodium umbrosum] Length = 187 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 129 >gi|67035891|gb|AAY62872.1| small ribosomal protein subunit 4 [Schofieldiella micans] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|7576533|gb|AAF63879.1| ribosomal protein system 4 [Glyphothecium sciuroides] Length = 189 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNE 130 >gi|67035941|gb|AAY62897.1| small ribosomal protein subunit 4 [Leptodon longisetus] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T L+ E R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVLLQLPEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|212004169|gb|ACJ15393.1| Rps4 [Pellaea breweri] Length = 182 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 15 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 74 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 132 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 133 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 180 >gi|118724401|gb|ABL10774.1| ribosomal protein small subunit 4 [Paragymnopteris marantae] Length = 191 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 83 VIFQLGMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 142 FGRDEVPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 189 >gi|48527373|gb|AAT45819.1| small ribosomal protein 4 [Plagiochila exigua] Length = 202 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKP------------SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK S + ++L KQK++ YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSGSLDRSTLNKKVSQYRIRLEEKQKLRFPYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIKNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINEWLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|67035893|gb|AAY62873.1| small ribosomal protein subunit 4 [Trachyphyllum gastrodes] Length = 198 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 140 >gi|67036052|gb|AAY62952.1| small ribosomal protein subunit 4 [Squamidium brasiliense] Length = 199 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 156 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|52788801|gb|AAU87378.1| ribosomal protein small subunit 4 [Leptopteris hymenophylloides] Length = 186 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD Sbjct: 17 QSASKKISQFCIRLEAKQRLRFNYGS-TERQLLRYVRIARKAKGSTGQVLLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 IV PTI AARQ VNHRH+LVN V+I SYRCK D+ V+ ++ ++ +E Sbjct: 76 IVPELGMAPTIPAARQSVNHRHILVNDHIVDIPSYRCKPRDITTVRDRTSSYDRITKEIE 135 Query: 156 ASQLAERDVPEYISVN 171 +SQ E+ +P++++++ Sbjct: 136 SSQ-GEK-IPDHLTLS 149 >gi|42556424|gb|AAS19807.1| small ribosomal protein 4 [Heteroscyphus argutus] Length = 191 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRPDNTIFRLGMSSTIPGARQLVNHRHILINDDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 127 AIKNKQKSQSVITKNLNLFQKLKIPSHLTFDSMKLRGSVNQMINREWINLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|67035931|gb|AAY62892.1| small ribosomal protein subunit 4 [Mesonodon flavescens] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+L+N V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILINDSIVDIPSYRCKPQDFITIKNQRK 136 >gi|86438892|emb|CAJ55422.1| small ribosomal protein 4 [Plagiochila fasciculata] Length = 179 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDMVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 AIRNKEK 144 >gi|67035897|gb|AAY62875.1| small ribosomal protein subunit 4 [Orthotheciella varia] Length = 194 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|124021082|gb|ABM88814.1| small ribosomal protein subunit 4 [Aneura mirabilis] Length = 192 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 31 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + L + Sbjct: 90 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVDRRDMNSLQKP 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I + + + LVVE+YSR Sbjct: 150 EIPNHLTFDSKEFLGSVQQI---IDRDWIDLKINELLVVEYYSR 190 >gi|48527389|gb|AAT45827.1| small ribosomal protein 4 [Plagiochila macrostachya] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EVKQKSK 148 + K K Sbjct: 138 TIGNKKK 144 >gi|12330530|gb|AAG52802.1| ribosomal protein 4 [Thelia asprella] Length = 189 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|548859|sp|P36447|RR4_ANTOD RecName: Full=30S ribosomal protein S4, chloroplastic gi|439918|emb|CAA82427.1| ribosomal protein S4 [Anthoxanthum odoratum] Length = 196 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 14/176 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNTLFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERD---VPEYISVN 171 +LVNGR VNI S+RCK D+I K Q+SK L + +A D +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSKDLVR----NSIASSDPGKLPKHLTID 167 >gi|169142796|ref|YP_001687221.1| ribosomal protein S4 [Aneura mirabilis] gi|187608859|sp|A2T833|RR4_ANEMR RecName: Full=Plastid 30S ribosomal protein S4 gi|153973822|gb|ABS54482.1| ribosomal protein S4 [Aneura mirabilis] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 41 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + L + Sbjct: 100 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVDRRDMNSLQKP 159 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I + + + LVVE+YSR Sbjct: 160 EIPNHLTFDSKEFLGSVQQI---IDRDWIDLKINELLVVEYYSR 200 >gi|99640030|emb|CAJ45143.1| putative ribosomal protein S4 gene [Lophosoria quadripinnata] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKASNPGETRVAA----DQSASKKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH++VN R V++ SYRCK Sbjct: 68 KTKGSTGQVSLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQLASVLEASQLAER--DVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + R ++P+++ S+ N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDEIPDHLTFSLLEGNRPKGLVNRIANRESIDLNI- 186 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 -NELLVVEYYSR 197 >gi|48527377|gb|AAT45821.1| small ribosomal protein 4 [Plagiochila fuscolutea] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLESKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIVT 150 >gi|32401769|gb|AAP80873.1| small ribosomal protein 4 [Tsuga mertensiana] Length = 191 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 13/182 (7%) Query: 34 PGLHGQRRKS--------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTS 85 PGL +R KS K S + ++ KQK++ YG ++E++ + A R++G T Sbjct: 12 PGLTSKRPKSRNDSINRRKISQYRIRPEEKQKLRFNYG-LTERQLLKYVRIARRAKGSTG 70 Query: 86 HNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 L+ LE R D I++R PTI ARQ VNH H+ VN V+I SY CK DVI ++ Sbjct: 71 QVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRD 130 Query: 146 KSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 + + A + + L +RD +P++++ N +I S K + + LVVE+Y Sbjct: 131 QQRLRAIIRKNIDLFQRDKLPKHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYY 187 Query: 205 SR 206 SR Sbjct: 188 SR 189 >gi|307683499|dbj|BAJ19728.1| ribosomal protein S4 [Pseudotsuga sinensis var. wilsoniana] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRTIIRKNIDLLQRD 158 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 159 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 199 >gi|110590036|gb|ABG77461.1| ribosomal protein small subunit 4 [Equisetum bogotense] Length = 178 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + K S + ++L AKQ+++ YG ++E++ + + A ++G T L+ LE RLD Sbjct: 9 QSIQKKVSQYCIRLEAKQRLRFNYG-LTERQLLNYVRIARCAKGSTGQILLQLLEMRLDN 67 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 I++R VPTI +ARQ +NHRH+LVN R V++ S+ CK D+I + Sbjct: 68 ILFRLGVVPTIPSARQLINHRHILVNDRIVDVPSFHCKPKDIITI 112 >gi|49182694|gb|AAT57809.1| small ribosomal protein [Aneura mirabilis] gi|124021080|gb|ABM88813.1| small ribosomal protein subunit 4 [Aneura mirabilis] Length = 191 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 30 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + L + Sbjct: 89 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVDRRDMNSLQKP 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I + + + LVVE+YSR Sbjct: 149 EIPNHLTFDSKEFLGSVQQI---IDRDWIDLKINELLVVEYYSR 189 >gi|41323097|gb|AAR99778.1| small ribosomal protein 4 [Plagiochila cristata] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 27/191 (14%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFSLGLSPTIPGARQLVNHRHISINNDVVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIM 195 + KQKS+ + + + + +P ++ + + + +I + +LK + Sbjct: 138 TIVNKQKSRSIVTK-NINSFQKSKIPSHLIFDSTQLRGSVNQIINREWINLK-------I 189 Query: 196 QPNLVVEFYSR 206 LVVE+YSR Sbjct: 190 NELLVVEYYSR 200 >gi|7576615|gb|AAF63920.1| ribosomal protein system 4 [Entodon brevisetus] Length = 188 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|7576573|gb|AAF63899.1| ribosomal protein system 4 [Ctenidium malacodes] Length = 190 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|67035953|gb|AAY62903.1| small ribosomal protein subunit 4 [Curvicladium kurzii] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 136 >gi|67035970|gb|AAY62911.1| small ribosomal protein subunit 4 [Porotrichopsis flacca] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 141 >gi|50235330|gb|AAT70698.1| Rps4 [Scorpiurium circinatum] Length = 195 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|117306738|emb|CAH73337.1| ribosomal protein S4 [Glyphothecium sciuroides] Length = 183 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNIIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I +K + Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIKNE 123 >gi|48527359|gb|AAT45812.1| small ribosomal protein 4 [Plagiochila bantamensis] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R PT+ ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTILRLGMSPTVPGARQLVNHGHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 ++ + K + V + + + +P +++ + + + + + D + + +Q N Sbjct: 138 TIRNEQKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGSV----NQMIDREW-INLQINEL 192 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 193 LVVEYYSR 200 >gi|67035972|gb|AAY62912.1| small ribosomal protein subunit 4 [Homalia trichomanoides] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|118627500|emb|CAL39384.1| small ribosomal protein 4 [Lophocolea difformis] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|314906415|gb|ADT61780.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 196 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 138 >gi|63101105|gb|AAY33177.1| small ribosomal protein 4 [Hygrohypnum smithii] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 99 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 143 >gi|309798830|ref|ZP_07693093.1| 30S ribosomal protein S4 [Streptococcus infantis SK1302] gi|308117556|gb|EFO54969.1| 30S ribosomal protein S4 [Streptococcus infantis SK1302] Length = 133 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 5/135 (3%) Query: 73 IFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 +F +A + +G N + LE RLD +VYR T ARQFVNH H+LV+G+ V+I Sbjct: 1 MFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIP 60 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 SYR G VI V++KS ++ ++LEA + A P ++S + + + + R+P +D Sbjct: 61 SYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSLTRLPE--RDEIN 117 Query: 192 PVIMQPNLVVEFYSR 206 P I + LVVEFY++ Sbjct: 118 PEINEA-LVVEFYNK 131 >gi|67035968|gb|AAY62910.1| small ribosomal protein subunit 4 [Porotrichum longirostre] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 141 >gi|67035905|gb|AAY62879.1| small ribosomal protein subunit 4 [Pseudocalliergon angustifolium] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|50235326|gb|AAT70696.1| Rps4 [Eurhynchium striatulum] gi|50235336|gb|AAT70701.1| Rps4 [Rhynchostegium serrulatum] Length = 195 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|78102687|gb|ABB21557.1| small ribosomal protein 4 [Plagiochila lyallii] Length = 165 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDMVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 AIRNKEK 137 >gi|3098230|gb|AAC15563.1| small ribosomal protein 4 [Brachythecium rutabulum] gi|222103546|gb|ACM44302.1| small ribosomal protein subunit 4 [Brachythecium rutabulum] Length = 197 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 139 >gi|67035994|gb|AAY62923.1| small ribosomal protein subunit 4 [Chrysocladium flammeum] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN ++I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMIDIPSYRCKPQDFITIKNQRK 136 >gi|294337152|emb|CAQ52726.1| ribosomal protein S4 [Homalia lusitanica] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRK 144 >gi|63101059|gb|AAY33154.1| small ribosomal protein 4 [Symphysodontella cylindracea] Length = 195 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P S+ ++ K S + ++L KQK++ +YG I+E++ Sbjct: 3 KIIRRLGTLPGLTNKTPQLKSSF---INQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 58 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI AR VNHRH+LVN V+ Sbjct: 59 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARXLVNHRHILVNDCIVD 118 Query: 130 IGSYRCKEGDVIEVKQKSK 148 I SY+CK D I +K + K Sbjct: 119 IPSYQCKPQDXITIKNQRK 137 >gi|51458075|gb|AAU03391.1| ribosomal protein small subunit 4 [Hymenasplenium cheilosorum] Length = 189 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD +++R Sbjct: 27 KISQFCIRLEAKQRLRLNYG-LTERQLLRYVRIARKTRGSTGQVLLQLLEMRLDNVLFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYR K D+I + + + L+ + + Sbjct: 86 GMASTIPAARQLVNHRHILVNNCIVDIPSYRRKPKDIITARNRPTSW-NALKGESIGGDE 144 Query: 164 VPEYISV 170 P++++V Sbjct: 145 TPDHLTV 151 >gi|67036020|gb|AAY62936.1| small ribosomal protein subunit 4 [Scorpiurium deflexifolium] Length = 190 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 132 >gi|78102721|gb|ABB21574.1| small ribosomal protein 4 [Plagiochila stephensoniana] Length = 189 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 AIRNKEK 137 >gi|82408943|gb|ABB73266.1| ribosomal protein small subunit 4 [Loxogramme grammitoides] Length = 180 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E + + A ++RG T + LE RLD +++ Sbjct: 18 KISQFCIRLEAKQRLRLNYG-LTEXQLLKYVRVARKARGSTGQVPLQLLEMRLDNVIFHL 76 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN V+I SYRCK D+I + + ++ S+ D Sbjct: 77 GLASTVPAARQLVNHRHILVNNCVVDIPSYRCKPKDIITARNRPTSYDAL--RSKFTRGD 134 Query: 164 -VPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ ++ DN V ++ + + + LVVE+YSR Sbjct: 135 KTPDHLTSYLSEDNKPTGLVNCIANRESIKLDI--NELLVVEYYSR 178 >gi|37992679|gb|AAR06518.1| small ribosomal protein 4 [Squamidium brasiliense] Length = 188 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 145 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 146 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 186 >gi|324986467|ref|YP_004276338.1| ribosomal protein S4 [Pinus monophylla] gi|323522562|gb|ADX94904.1| ribosomal protein S4 [Pinus monophylla] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + + R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRVSRRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE RL+ I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRLNNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQPRLRAIIKKNIDLFQRDKLPNHLTF-HPLQYKGFI---NQIIDSKW-ISLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|228017416|gb|ACP52233.1| ribosomal protein S4 [Larix occidentalis] Length = 201 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRTIIRKNIDLLQRD 158 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 159 KLPNHLTFNSLQYKGFINQIIDS-KWIGLKI--NELLVVEYYSR 199 >gi|66990664|emb|CAI29110.1| small ribosomal protein 4 [Plagiochila fusifera] Length = 198 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLASKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVK--QKSKQLAS 152 ++ QKS+ L + Sbjct: 138 TIRNEQKSQSLVT 150 >gi|67036038|gb|AAY62945.1| small ribosomal protein subunit 4 [Myuroclada maximowiczii] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|294337082|emb|CAQ52691.1| ribosomal protein S4 [Brachythecium rivulare] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|66990670|emb|CAI29113.1| small ribosomal protein 4 [Plagiochila streimannii] Length = 202 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K A V + + + +P +++ + + + + + + + LV Sbjct: 138 AIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWIDLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|32401894|gb|AAP80935.1| small ribosomal protein 4 [Platycladus orientalis] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KP + ++L+ Q+++ +YG + E++ + A R++G T + LE RLD I++R Sbjct: 34 KPXKYPVRLKEXQRLRFHYG-LPERQLLQYVRIARRAKGSTGQVXLQLLEMRLDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH+LV GR V I SYRCK D+I +K+K Sbjct: 93 GMALTIPEARQLVNHRHILVXGRIVXIPSYRCKPQDLIXIKEKE 136 >gi|67035923|gb|AAY62888.1| small ribosomal protein subunit 4 [Hamatocaulis vernicosus] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|67035925|gb|AAY62889.1| small ribosomal protein subunit 4 [Campylophyllum halleri] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDFIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 197 >gi|284468549|gb|ADB90335.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 186 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 128 >gi|37992677|gb|AAR06517.1| small ribosomal protein 4 [Squamidium brasiliense] Length = 189 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|37992675|gb|AAR06516.1| small ribosomal protein 4 [Scleropodium obtusifolium] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|75858224|gb|ABA28686.1| small ribosomal protein 4 [Allisonia cockaynii] Length = 191 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTNKILKSKSGYTNQSVSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L++ +V+I SY CK DVI Sbjct: 67 GSTGRVLLQSLEMRLDNIIFRFGMAPTIPGARQLVNHRHILIDDATVDIPSYGCKPRDVI 126 Query: 142 EVKQKSK 148 +K + K Sbjct: 127 TIKNQRK 133 >gi|63191720|gb|AAY34820.1| small ribosomal protein subunit 4 [Mniomalia semilimbata] Length = 198 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 96 GMALTIPEARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQQK 140 >gi|50235344|gb|AAT70705.1| Rps4 [Scleropodium touretii] gi|50235372|gb|AAT70719.1| Rps4 [Scleropodium obtusifolium] Length = 195 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|50235358|gb|AAT70712.1| Rps4 [Scleropodium cespitans] Length = 195 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|284468537|gb|ADB90329.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|284468541|gb|ADB90331.1| ribosomal protein subunit 4 [Scleropodium cespitans] Length = 185 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 83 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 127 >gi|222103496|gb|ACM44277.1| small ribosomal protein subunit 4 [Brachythecium rutabulum] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|124021084|gb|ABM88815.1| small ribosomal protein subunit 4 [Aneura mirabilis] Length = 192 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 31 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + L + Sbjct: 90 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVDRRDMNSLQKP 149 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I + + + LVVE+YSR Sbjct: 150 EIPNHLTFDSKEFLGSVQQI---IDRDWIDLKINELLVVEYYSR 190 >gi|42794724|gb|AAS45757.1| Rps4 [Thibaudia martiniana] Length = 211 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 11/159 (6%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG ++E + + +++G T L+ LE RLD I++R TI ARQ Sbjct: 53 KQKWRFPYG-LTEPQLLKYVRXPXKAKGSTGQVLLQLLERRLDNILFRWGMASTIPGARQ 111 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEY 167 VNH HVLVNGR ++I SYRCK D+I ++KS+ L L + + + VP + Sbjct: 112 LVNHSHVLVNGRIIDIPSYRCKPRDIIXAREKSRALIQNSFQNLFDLPSXKRKRKRVPYH 171 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++N +I ++ K V + + LVVE+YSR Sbjct: 172 LTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|51458172|gb|AAU03434.1| ribosomal protein small subunit 4 [Asplenium flaccidum] Length = 191 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 2/126 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD +++ Sbjct: 29 KIXQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDNVLFHL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + ++ S + ++ Sbjct: 88 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRPTSFNALRNKSLVGDK- 146 Query: 164 VPEYIS 169 P +++ Sbjct: 147 TPNHLT 152 >gi|99639933|emb|CAJ45125.1| putative ribosomal protein S4 gene [Alsophila ramispina] Length = 199 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 14/193 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKTSNPGETRIA----TDQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK Sbjct: 68 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPK 127 Query: 139 DVIEVKQKSKQ---LASVLEASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPV 193 D+I V+ + L S + S ++ +P+++S + N V ++ + + + Sbjct: 128 DIITVRNRPTSYNGLRSGINESSRGDK-IPDHLSFSLLEGNRPKGLVNRIANRESIDLNI 186 Query: 194 IMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 187 --NELLVVEYYSR 197 >gi|63100997|gb|AAY33123.1| small ribosomal protein 4 [Herpetineuron toccoae] Length = 194 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAATIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|312863483|ref|ZP_07723721.1| putative ribosomal protein S4 [Streptococcus vestibularis F0396] gi|311101019|gb|EFQ59224.1| putative ribosomal protein S4 [Streptococcus vestibularis F0396] Length = 129 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 9/135 (6%) Query: 73 IFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 +F +A + +G T N + LE RLD +VYR T ARQFVNH H+LV+G+ V+I Sbjct: 1 MFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIP 60 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 SY G VI V++KS ++ ++LEA + A P ++S N + + +R+P + Sbjct: 61 SYCVTPGQVISVREKSLKVRAILEAVE-ATLGCPAFVSFNAKKLEGSLIRLPERDE---- 115 Query: 192 PVIMQPNLVVEFYSR 206 + LVVEFY++ Sbjct: 116 ---INEALVVEFYNK 127 >gi|284468539|gb|ADB90330.1| ribosomal protein subunit 4 [Scleropodium cespitans] Length = 187 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 129 >gi|117306742|emb|CAH73339.1| ribosomal protein S4 [Lepyrodon pseudolagurus] Length = 183 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T + E RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVSLQLPEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 81 GMAPTIPGARQLVNHRHILVNDYMVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKS 140 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 141 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 181 >gi|46810986|gb|AAT01811.1| small ribosomal protein 4 [Allisonia cockaynii] Length = 197 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTNKILKSKSGYTNQSVSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R PTI ARQ VNHRH+L++ +V+I SY CK DVI Sbjct: 73 GSTGRVLLQSLEMRLDNIIFRFGMAPTIPGARQLVNHRHILIDDATVDIPSYGCKPRDVI 132 Query: 142 EVKQKSK 148 +K + K Sbjct: 133 TIKNQRK 139 >gi|322517735|ref|ZP_08070593.1| 30S ribosomal protein S4 [Streptococcus vestibularis ATCC 49124] gi|322123628|gb|EFX95225.1| 30S ribosomal protein S4 [Streptococcus vestibularis ATCC 49124] Length = 166 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 45 MSRYTGPSWKQARRLGFSLTGTGKE-LARRNYIPGQHGPNNRSKLSEYGLQLAEKQKLRF 103 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG + EK+FR++F +A + +G T NL+ LE RLD +VYR T ARQFVNH Sbjct: 104 TYG-VGEKQFRNLFVQATKVKGGTLGFNLMLLLERRLDNVVYRLGLATTRHQARQFVNH 161 >gi|118724403|gb|ABL10775.1| ribosomal protein small subunit 4 [Paragymnopteris sargentii] Length = 182 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 20 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + + Sbjct: 79 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVESFGRDE 137 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 180 >gi|328541152|gb|AEB21800.1| ribosomal protein S4 [Lepidozia cupressina] Length = 199 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 14/187 (7%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 22 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS-VNIGSYRCKEGDV 140 G T L+ LE RLD ++R TI ARQ VNHRH+ +N + V+I SY C+ GD+ Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNNIVDIPSYNCEPGDI 132 Query: 141 IEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 I ++ K K + + + L + +P +++ + + + I ++ + + L Sbjct: 133 ITIRDKQKSRSIIAKNVNLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELL 189 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 190 VVEYYSR 196 >gi|118724425|gb|ABL10786.1| ribosomal protein small subunit 4 [Argyrochosma nivea] Length = 195 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 79/128 (61%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + S L + Sbjct: 92 GMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAVKDES-LGRDE 150 Query: 164 VPEYISVN 171 VP++++++ Sbjct: 151 VPDHLTLS 158 >gi|49182673|gb|AAT57799.1| small ribosomal protein [Ascidiota blepharophylla subsp. alaskana] Length = 194 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PG G+ K K SY + ++L KQK++ +YG ++E++ + A ++ Sbjct: 11 PGFTGKTLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARNAK 69 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ PTI ARQ VNH+H+ +N +V+I SY C+ GD+I Sbjct: 70 GSTGQVLLQLLEMRLDNTIFCLGMAPTIPGARQLVNHKHISINNDTVDIPSYNCEPGDII 129 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K + + + + + ++P +++ + + + + + + + LV Sbjct: 130 XIKNSGKSQSIITKNMNSFQKLEIPNHLTFDSTQLRGS---VNQMINREWINLKVNELLV 186 Query: 201 VEFYSR 206 VE+YSR Sbjct: 187 VEYYSR 192 >gi|50235342|gb|AAT70704.1| Rps4 [Brachythecium salebrosum] Length = 195 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|294337234|emb|CAQ52766.1| ribosomal protein S4 [Pinnatella minuta] Length = 202 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGPTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D+I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRK 144 >gi|118625989|emb|CAL39316.1| small ribosomal protein 4 [Plagiochila sp. de Roo s.n.] Length = 202 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 + K K A V + + + +P +++ + + + ++ + +LK + Sbjct: 138 TIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSVNQMINREWINLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|80974160|gb|ABB53773.1| small ribosomal subunit protein 4 [Glyphothecium gracile] Length = 153 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ Sbjct: 3 KQKVRFHYG-ITERQLPNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQ 61 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 VNHRH+LVN VNI SYRCK D I +K K Sbjct: 62 LVNHRHILVNDCIVNIPSYRCKPQDFIIIKNK 93 >gi|222103420|gb|ACM44239.1| small ribosomal protein subunit 4 [Amblystegium serpens] Length = 202 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|82408945|gb|ABB73267.1| ribosomal protein small subunit 4 [Loxogramme salicifolia] Length = 184 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E + + A ++RG T + LE RLD +++ Sbjct: 22 KISQFCIRLEAKQRLRLNYG-LAEHQLLKYVRVARKARGSTGQVPLQLLEMRLDNVIFHL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T+ AARQ VNHRH+LVN VNI SYRCK D+I + + ++ S+ D Sbjct: 81 GLASTVPAARQLVNHRHILVNNCVVNIPSYRCKPKDIITARNRPTSYDAL--RSKFTRGD 138 Query: 164 -VPEYIS--VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++ ++ D+ V ++ + + + LVVE+YSR Sbjct: 139 KTPDHLTSYLSEDDKPTGLVNCIANRESIKLDI--NELLVVEYYSR 182 >gi|99639954|emb|CAJ45127.1| putative ribosomal protein S4 gene [Cibotium chamissoi] Length = 196 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 14/193 (7%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 11 LTGKASNPGETRVAA----DQSTSRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 64 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD I++ + TI AARQ VNHRH++VN R V++ SYRCK Sbjct: 65 KTKGSTGQVPLQLLEMRLDNIIFHSGMASTIPAARQLVNHRHIVVNDRIVDVPSYRCKPK 124 Query: 139 DVIEVKQKSKQ---LASVLEASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPV 193 D+I V+ + L S + S ++ +P++++++ N V ++ + + + Sbjct: 125 DIITVRNRPTSYNGLRSGINESSRGDK-IPDHLTLSLLEGNRPKGLVNRIANRESIDLNI 183 Query: 194 IMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 184 --NELLVVEYYSR 194 >gi|294337232|emb|CAQ52765.1| ribosomal protein S4 [Pinnatella alopecuroides] Length = 202 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGPTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D+I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRK 144 >gi|42556394|gb|AAS19792.1| small ribosomal protein 4 [Balantiopsis cancellata] Length = 191 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTLKQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDNI 126 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ + K + + + L +P +++ + + + ++ + + LV Sbjct: 127 TVRNRQKSQSIITKNINLFPNSKIPSHLTFDSTKLRGL---VNQTINRELINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|42556430|gb|AAS19810.1| small ribosomal protein 4 [Isotachis armata] Length = 191 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTLKQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDNI 126 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM-VATFVRIPSSLKDVPYPVIMQPNL 199 V+ + K + + + L +P +++ D+M + FV ++ + + L Sbjct: 127 TVRNRQKSQSIITKNINLFPNSKIPSHLTF--DSMKLQGFVN--QTINRELINLKINELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|118724351|gb|ABL10749.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. californica] gi|118724359|gb|ABL10753.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. mucronata] gi|118724361|gb|ABL10754.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. mucronata] gi|118724363|gb|ABL10755.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. mucronata] gi|118724383|gb|ABL10765.1| ribosomal protein small subunit 4 [Pellaea truncata] gi|118724387|gb|ABL10767.1| ribosomal protein small subunit 4 [Pellaea wrightiana] Length = 195 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|7576553|gb|AAF63889.1| ribosomal protein system 4 [Brachythecium austroglareosum] gi|7576555|gb|AAF63890.1| ribosomal protein system 4 [Brachythecium salebrosum] Length = 188 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 87 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 131 >gi|37992409|gb|AAR06383.1| small ribosomal protein 4 [Adelothecium bogotense] Length = 194 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMATTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQRK 136 >gi|50235370|gb|AAT70718.1| Rps4 [Brachythecium dieckei] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|67035821|gb|AAY62841.1| small ribosomal protein subunit 4 [Isocladiella surcularis] Length = 198 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I ++ + K Sbjct: 96 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIRNQRK 140 >gi|48527375|gb|AAT45820.1| small ribosomal protein 4 [Plagiochila flexuosa] Length = 202 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKLKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGEVLLQLLEMRSDNTIFRLGMSPTIPGARQLVNHRHISINNDMVNIPSYNCESGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K + V + + + +P +++ + + + + + + + LV Sbjct: 138 TIGNKKKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWITLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|7576647|gb|AAF63936.1| ribosomal protein system 4 [Adelothecium bogotense] Length = 189 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMATTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQRK 132 >gi|50235352|gb|AAT70709.1| Rps4 [Brachythecium appleyardiae] Length = 193 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 134 >gi|51458082|gb|AAU03394.1| ribosomal protein small subunit 4 [Asplenium tricholepis] Length = 189 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +SE + + A ++RG T + LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQRLRFNYG-LSECQLLRYVRIARKTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN V+I SYRC D+I V+ + + L+ Sbjct: 81 VLFQLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCNPKDIITVRNRPTS-CNALKNRS 139 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++SV+ N VA I ++ ++ LVVE+YSR Sbjct: 140 FVGYKTPDHLSVSFSEGNGPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|314906529|gb|ADT61785.1| ribosomal protein subunit 4 [Brachythecium frigidum] gi|314906531|gb|ADT61786.1| ribosomal protein subunit 4 [Brachythecium asperrimum] Length = 180 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|309322306|ref|YP_003934157.1| ribosomal protein S4 [Cedrus deodara] gi|228017102|gb|ACP51924.1| ribosomal protein S4 [Cedrus deodara] gi|307683232|dbj|BAJ19540.1| ribosomal protein S4 [Cedrus deodara] Length = 201 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 40 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + + + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRSIIKKNIDLFQRD 158 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 159 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 199 >gi|32401785|gb|AAP80881.1| small ribosomal protein 4 [Pseudotsuga menziesii] Length = 174 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 13 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 71 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + + + L +RD Sbjct: 72 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQPRLRTIIRKNIDLLQRD 131 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 132 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 172 >gi|118724349|gb|ABL10748.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. californica] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|118625961|emb|CAL39302.1| small ribosomal protein 4 [Chiloscyphus vermicularis] Length = 202 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNEIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 138 AIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|314906409|gb|ADT61777.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|314906533|gb|ADT61787.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906535|gb|ADT61788.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906537|gb|ADT61789.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|314906541|gb|ADT61790.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906543|gb|ADT61791.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906545|gb|ADT61792.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|314906547|gb|ADT61793.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906549|gb|ADT61794.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906553|gb|ADT61796.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906555|gb|ADT61797.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906557|gb|ADT61798.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906559|gb|ADT61799.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906561|gb|ADT61800.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906563|gb|ADT61801.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906565|gb|ADT61802.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906567|gb|ADT61803.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906569|gb|ADT61804.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906571|gb|ADT61805.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906573|gb|ADT61806.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906577|gb|ADT61808.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|314906579|gb|ADT61809.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906581|gb|ADT61810.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906583|gb|ADT61811.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906585|gb|ADT61812.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906587|gb|ADT61813.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906589|gb|ADT61814.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906591|gb|ADT61815.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|314906593|gb|ADT61816.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906595|gb|ADT61817.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906597|gb|ADT61818.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906601|gb|ADT61820.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906603|gb|ADT61821.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906605|gb|ADT61822.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906607|gb|ADT61823.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906609|gb|ADT61824.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906611|gb|ADT61825.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906613|gb|ADT61826.1| ribosomal protein subunit 4 [Scleropodium julaceum] gi|314906615|gb|ADT61827.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906617|gb|ADT61828.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906623|gb|ADT61831.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906625|gb|ADT61832.1| ribosomal protein subunit 4 [Scleropodium cespitans] gi|314906627|gb|ADT61833.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906629|gb|ADT61834.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906631|gb|ADT61835.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906637|gb|ADT61837.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906641|gb|ADT61839.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|314906645|gb|ADT61841.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906647|gb|ADT61842.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906649|gb|ADT61843.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906651|gb|ADT61844.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906653|gb|ADT61845.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906655|gb|ADT61846.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906657|gb|ADT61847.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906659|gb|ADT61848.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906661|gb|ADT61849.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906663|gb|ADT61850.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906665|gb|ADT61851.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906667|gb|ADT61852.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906669|gb|ADT61853.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906671|gb|ADT61854.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906673|gb|ADT61855.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906675|gb|ADT61856.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906677|gb|ADT61857.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906679|gb|ADT61858.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906681|gb|ADT61859.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906683|gb|ADT61860.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906685|gb|ADT61861.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906687|gb|ADT61862.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906690|gb|ADT61863.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906692|gb|ADT61864.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906694|gb|ADT61865.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906696|gb|ADT61866.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906698|gb|ADT61867.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906700|gb|ADT61868.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906702|gb|ADT61869.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906704|gb|ADT61870.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906706|gb|ADT61871.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906708|gb|ADT61872.1| ribosomal protein subunit 4 [Scleropodium sp. B (BEC-2010)] gi|314906710|gb|ADT61873.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 180 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|118724419|gb|ABL10783.1| ribosomal protein small subunit 4 [Argyrochosma fendleri] Length = 197 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 6/171 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EAS 157 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V E+ Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAVKGESL 146 Query: 158 QLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + V ++ + V + LVVE+YSR Sbjct: 147 GLGRDEVPDHLTLSISKTSEPTGLVNHMANRESVNLDI--NELLVVEYYSR 195 >gi|314906621|gb|ADT61830.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] Length = 177 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 16 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 75 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 119 >gi|314906643|gb|ADT61840.1| ribosomal protein subunit 4 [Scleropodium cespitans] Length = 180 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|328541054|gb|AEB21751.1| ribosomal protein S4 [Lembidium longifolium] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 3 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 53 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D ++R TI ARQ VNHRH+ + Sbjct: 54 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPI 112 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + I Sbjct: 113 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGS---I 169 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 170 NQTINRESIDLKINELLVVEYYSR 193 >gi|66990666|emb|CAI29111.1| small ribosomal protein 4 [Plagiochila incerta] Length = 176 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 73 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNM 175 + K K + V++ + + +P +++ + + Sbjct: 133 TIGNKQKSRSIVIKNINSFQKLKIPSHLTFDSTQL 167 >gi|49182706|gb|AAT57815.1| small ribosomal protein [Gackstroemia weindorferi] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKILKLKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ TI ARQ VNHRH+ +N +VNI SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFCLGMASTIPGARQLVNHRHISINNETVNIPSYNCEPGDII 130 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K Q + + ++P +++ + + + +I + + + LV Sbjct: 131 TIRNSEKSQSIITTNMNSFYKSEIPNHLTFDSTQLRGSINKI---IHREWVDLKVNELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|46811040|gb|AAT01838.1| small ribosomal protein 4 [Phyllothallia nivicola] Length = 200 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 17/170 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-LTERQLLRYVRIARKTKGSTGQVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AER 162 PTI ARQ VNHRH++VN +V+I SY C+ D I + + + + + + L E Sbjct: 95 GMAPTIPGARQLVNHRHIIVNDDTVDIPSYSCEPKDTITISNRRESQSIITKNMNLFREN 154 Query: 163 DVPEYISVNHD------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + N V I + ++ LVVE+YSR Sbjct: 155 KIPNHLTFDSTKSRGSVNQVINREWIDLKINEL---------LVVEYYSR 195 >gi|7576529|gb|AAF63877.1| ribosomal protein system 4 [Lepyrodon pseudolagurus] Length = 190 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T + E RLD +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVSLQLPEMRLDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 89 GMAPTIPGARQLVNHRHILVNVYMVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 189 >gi|328541058|gb|AEB21753.1| ribosomal protein S4 [Kurzia brevicalycina] Length = 200 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKQKSGYNDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD I Sbjct: 75 GSTGQVSLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHILINNDIVDIPSYNCEPGDTI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +++K K + V + L + +P ++ + + + I ++ + + LV Sbjct: 135 TIREKQKSQSVVTKNINLFQNLKIPSHLIFDSIKLCGS---INQTINREFIDLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|284468535|gb|ADB90328.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|314906411|gb|ADT61778.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 183 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 125 >gi|118724357|gb|ABL10752.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. mucronata] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|48527387|gb|AAT45826.1| small ribosomal protein 4 [Plagiochila longiramea] Length = 202 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLESKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIIT 150 >gi|41323117|gb|AAR99788.1| small ribosomal protein 4 [Plagiochilion mayebarae] Length = 202 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 ++ K K + + + + +P +++ + + + ++ + +I++ N Sbjct: 138 TIRNKQKSQSIITKNIDSFQKLKIPSHLTFDPTQLQGSVNQMINR-----EWIILKINEL 192 Query: 199 LVVEFYSR 206 LV E+YSR Sbjct: 193 LVAEYYSR 200 >gi|284468543|gb|ADB90332.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] gi|284468545|gb|ADB90333.1| ribosomal protein subunit 4 [Scleropodium touretii] gi|284468547|gb|ADB90334.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 181 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 20 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 78 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 79 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 123 >gi|51458080|gb|AAU03393.1| ribosomal protein small subunit 4 [Asplenium cuspidatum] Length = 189 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 20/179 (11%) Query: 37 HGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 + Q K S F ++L AKQ+++ YG +SE++ + A ++RG T + LE RL Sbjct: 20 NDQSTSRKISQFCVRLEAKQRLRFNYG-LSERQLLRYVRIARKTRGSTGQVPLQLLEMRL 78 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D ++++ TI AARQ VNHRH+LVN V+I SYRC D+I V+ + + L+ Sbjct: 79 DNVLFQLGMASTIPAARQLVNHRHILVNNWIVDIPSYRCSPKDIITVRNRPTS-CNALKN 137 Query: 157 SQLAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 138 RSFVGYKTPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|51458187|gb|AAU03441.1| ribosomal protein small subunit 4 [Asplenium gemmiferum] Length = 189 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +RG T L+ LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARGTRGSTGQVLLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L Sbjct: 81 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSF-NALGNKS 139 Query: 159 LAERDVPEYIS 169 L P++++ Sbjct: 140 LVGNKTPDHLT 150 >gi|262186756|ref|YP_003276015.1| ribosomal protein S4 [Pleurozia purpurea] gi|237780753|gb|ACR19399.1| ribosomal protein S4 [Pleurozia purpurea] Length = 196 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 100/193 (51%), Gaps = 10/193 (5%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 +S+ K+ R+I EN+W K + L + K S F +QLR +K+ +YG++ Sbjct: 3 ASRFKVCRQILENVWQTKKLTLKQELLISELRKNEKNKKQSDFSVQLRTMKKLSLFYGNL 62 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +K + + R+ D ++L+ +E RLD I+ R + T+F ARQ ++H+++ VN Sbjct: 63 PIRKMQ---RAKTRTYIDKKNSLLFNIEKRLDVILVRLNYCSTMFQARQLISHQNICVNY 119 Query: 126 RSVNIGSYRCKEGDVIEVKQKS-----KQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNI ++ GD+I +++ S + L +++ R P ++ VN+ + A + Sbjct: 120 KKVNIPGFQVSNGDLISIQENSLAFFESNIRRNLRTNRIG-RMKPNHLEVNYKTLKAVVL 178 Query: 181 RIPSSLKDVPYPV 193 P ++ PY + Sbjct: 179 YEPQQIR-FPYKI 190 >gi|212004177|gb|ACJ15397.1| Rps4 [Pellaea lyngholmii] Length = 187 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|156619634|gb|ABU88431.1| small ribosomal protein 4 [Aneura mirabilis] gi|156619636|gb|ABU88432.1| small ribosomal protein 4 [Aneura mirabilis] gi|156619638|gb|ABU88433.1| small ribosomal protein 4 [Aneura mirabilis] gi|156619640|gb|ABU88434.1| small ribosomal protein 4 [Aneura mirabilis] gi|156619642|gb|ABU88435.1| small ribosomal protein 4 [Aneura mirabilis] gi|156619644|gb|ABU88436.1| small ribosomal protein 4 [Aneura mirabilis] gi|156619646|gb|ABU88437.1| small ribosomal protein 4 [Aneura mirabilis] Length = 175 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A ++G T L+ LE RLD ++R Sbjct: 14 KISQYRIRLEEKQKLRLHYG-LTERQLLKYVFTARGAKGSTGQLLLQLLEMRLDNTIFRL 72 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK-QLASVLEASQLAER 162 VPTI AARQ VNHRHV +N ++I SY CK GDVI + + K +L + + L + Sbjct: 73 GIVPTIPAARQLVNHRHVSINEHIIDIPSYNCKPGDVITINNREKCRLVDRRDMNSLQKP 132 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + +I + + + LVVE+YSR Sbjct: 133 EIPNHLTFDSKEFLGSVQQI---IDRDWIDLKINELLVVEYYSR 173 >gi|51458117|gb|AAU03408.1| ribosomal protein small subunit 4 [Asplenium viride] Length = 167 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 12/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ + YG +++++ + A R+RG T + LE RLD +++ Sbjct: 5 KISQFCVRLEAKQILHFNYG-LTQRQLLRYVRIARRTRGSTGQVPLQLLEMRLDNVLFHL 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ Sbjct: 64 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNAMRNKSLVGDK- 122 Query: 164 VPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 P++++V+ D R+ + +++ N LVVE+YSR Sbjct: 123 TPDHLTVSLSEGDRATGLVNRVANR-----ESIVLNINELLVVEYYSR 165 >gi|75858244|gb|ABA28696.1| small ribosomal protein 4 [Tetracymbaliella cymbalifera] Length = 191 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNH+H+L+N V+I SY C GD+I ++ K K + + + L ++ Sbjct: 89 GMSSTIPGARQLVNHQHILINEDIVDIPSYNCSPGDIITIRNKEKSQSIITKNINLFQKL 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + + LVVE+YSR Sbjct: 149 KIPSHLTFDLTQLRGS---VNQMINRESVNLKINELLVVEYYSR 189 >gi|228016218|gb|ACP51054.1| ribosomal protein S4 [Pinus squamata] Length = 203 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 13/210 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKS-KPSYFGLQLRAKQKMK 59 MS+ + KI RR+ K P N + ++ R S K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKIIRRLKTLPGLTSKRPKNRKD---SMNMNRSSSRKISQYRIRLEEKQKLR 57 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + + R++G T L+ LE RL+ I++R PTI ARQ VNH Sbjct: 58 FHYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLNNILFRLGMAPTIPGARQLVNHG 116 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVAT 178 H+ VN V+I SY CK DVI ++ + + A + + L +RD +P +++ H Sbjct: 117 HIRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTF-HPLQYKG 175 Query: 179 FVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 F+ + + D + + ++ N LVVE+YSR Sbjct: 176 FI---NQIIDSKW-ISLKINELLVVEYYSR 201 >gi|118724353|gb|ABL10750.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. californica] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|111283696|gb|ABH09198.1| small ribosomal protein 4 [Herzogianthus vaginatus] Length = 186 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTGKTLKPKSGYIDRSTSNKKVSQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+++N V+I SY C+ GDVI Sbjct: 73 GSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHGHIVINNDIVDIPSYNCEAGDVI 132 Query: 142 EVKQKSK 148 ++ K K Sbjct: 133 TIRNKQK 139 >gi|18027996|gb|AAL55922.1| ribosomal protein S4 [Eriosorus hirtus] Length = 189 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%) Query: 19 LWGRPKSP--VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE 76 L GR K+ V+ R G Q K S F ++L KQ+++ YG ++E++ + Sbjct: 4 LTGRDKTSNSVDFRVAGD----QSASRKISQFCVRLETKQRLRFNYG-LTERQLLKYVRI 58 Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A ++RG T L+ LE RLD I++R TI AARQ VNHRH+ VN V+I SYRC Sbjct: 59 ARKTRGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHIXVNKGIVDIPSYRCN 118 Query: 137 EGDVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I + + ++ + + +P++ +SV+ D + V S + V + Sbjct: 119 PKDIITTRNRPIS-HNMTKGESIGRDGIPDHLTLSVSKDGEPSGLVNSMVSRESVDLEI- 176 Query: 195 MQPNLVVEFYSR 206 V EFYSR Sbjct: 177 -NELFVAEFYSR 187 >gi|78102631|gb|ABB21529.1| small ribosomal protein 4 [Plagiochila bispinosa] Length = 189 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISLNNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|18920747|gb|AAL82418.1| ribosomal protein system 4 [Isopterygiopsis pulchella] Length = 196 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T LE RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSSQLLEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKY 153 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 154 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 194 >gi|67036016|gb|AAY62934.1| small ribosomal protein subunit 4 [Rhynchostegium riparioides] Length = 199 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLINHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 141 >gi|50235328|gb|AAT70697.1| Rps4 [Rhynchostegiella tenella] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPRDFITIKNQRK 137 >gi|212004179|gb|ACJ15398.1| Rps4 [Pellaea mucronata] gi|212004203|gb|ACJ15410.1| Rps4 [Pellaea truncata] gi|212004205|gb|ACJ15411.1| Rps4 [Pellaea wrightiana] Length = 187 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|118724483|gb|ABL10815.1| ribosomal protein small subunit 4 [Cheilanthes parryi] Length = 195 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ ++ +V + + Sbjct: 92 NMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRTTSYNAV-KGESFGRDE 150 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ + V +S + V + LVVE++SR Sbjct: 151 VPDHLTLSISKTSEPTGLVNHMASRESVNLDI--NELLVVEYHSR 193 >gi|48527381|gb|AAT45823.1| small ribosomal protein 4 [Plagiochila heterophylla] Length = 200 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 39 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLAS 152 PTI ARQ VNHRH+ +N V+I SY C+ GD+I + KQKS+ + + Sbjct: 98 GMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIITIGNKQKSRSIVT 148 >gi|67036022|gb|AAY62937.1| small ribosomal protein subunit 4 [Rhynchostegium serrulatum] gi|67036024|gb|AAY62938.1| small ribosomal protein subunit 4 [Steerecleus serrulatus] Length = 194 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ +NHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLINHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|314906619|gb|ADT61829.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 176 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 15 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 74 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 118 >gi|46811020|gb|AAT01828.1| small ribosomal protein 4 [Isotachis multiceps] Length = 197 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTGKTLKQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRVARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 73 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDNI 132 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM-VATFVRIPSSLKDVPYPVIMQPNL 199 V+ + K + + + L +P +++ D+M + FV ++ + + L Sbjct: 133 TVRNRQKSQSIITKNINLFPNSKIPSHLTF--DSMKLRGFVN--QTINRELINLKINELL 188 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 189 VVEYYSR 195 >gi|224179500|ref|YP_002601030.1| ribosomal protein S4 [Monomastix sp. OKE-1] gi|217314543|gb|ACK36886.1| ribosomal protein S4 [Monomastix sp. OKE-1] Length = 208 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 16/156 (10%) Query: 1 MSKRESSKHKIDRRIGE--NLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 MS+ + +I RR+G+ L KS + ++ PG HG R K S + ++L+ KQK+ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLVNTAKS--SGKTTLPGQHGGSRPQKASQYSIRLKEKQKL 58 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++E + K+A +G T ++ LE RLD+IV+R+ PT+ AARQ V+H Sbjct: 59 RFNYG-VNESQLVRYVKKARNMKGSTGELVLQLLEMRLDSIVFRSGLAPTLRAARQLVSH 117 Query: 119 RHVLVNGRS-----------VNIGSYRCKEGDVIEV 143 H+ + ++ VNI SY+C+ GD + + Sbjct: 118 GHIAIETKTSQNKTENSFLPVNIPSYQCRPGDNVRL 153 >gi|328541128|gb|AEB21788.1| ribosomal protein S4 [Telaranea chaetocarpa] Length = 199 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKRKSNYNDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDLI 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +++ K K + + + L + +P +++ + + + +I + +LK + Sbjct: 135 KIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSITLCGSINQIINREWINLK-------IN 187 Query: 197 PNLVVEFYSR 206 VVE+YSR Sbjct: 188 ELFVVEYYSR 197 >gi|42556410|gb|AAS19800.1| small ribosomal protein 4 [Chiloscyphus cuspidatus] gi|227345125|gb|ACP28115.1| small ribosomal protein 4 [Chiloscyphus novae-zeelandiae var. grandistipulus] Length = 191 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDPIKLRGS---VNQMINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|37992595|gb|AAR06476.1| small ribosomal protein 4 [Meteoridium remotifolium] Length = 193 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 91 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTMKNQRKSETIISKNIEFYQKY 150 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 151 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 191 >gi|328541174|gb|AEB21811.1| ribosomal protein S4 [Telaranea pulcherrima var. mooreana] Length = 196 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 3 KVXRRLGA-LPGLTSKTLKPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 53 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE R D + R TI ARQ VNHRH+ + Sbjct: 54 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRPDNTILRLGMASTIPGARQLVNHRHISI 112 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + I Sbjct: 113 NNNIVDIPSYNCEPGDLITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---I 169 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 170 DQTINREWIDLKINELLVVEYYSR 193 >gi|314906635|gb|ADT61836.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 168 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|212004199|gb|ACJ15408.1| Rps4 [Pellaea truncata] Length = 185 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 18 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 77 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 135 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 136 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 183 >gi|118724421|gb|ABL10784.1| ribosomal protein small subunit 4 [Argyrochosma jonesii] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KGES 145 Query: 159 LAERDVPEYISV 170 L +VP+++++ Sbjct: 146 LGRDEVPDHLTL 157 >gi|80974138|gb|ABB53762.1| small ribosomal subunit protein 4 [Euptychium cuspidatum] Length = 202 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG-TLQGLTNKIPQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITEQQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRLGMAPTISGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN VNI SYRCK D I VK + + + ++ +P YI + +V Sbjct: 117 ILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKSKIPNHLTYIFLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NKILDRESIGLK-------INELLVVEYYSR 200 >gi|37992733|gb|AAR06545.1| small ribosomal protein 4 [Zelometeorium recurvifolium] Length = 187 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K + + + ++ Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTMKNQRKSETIISKNIEFYQKY 144 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 145 KIPNHLTYIFLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 185 >gi|86438870|emb|CAJ55407.1| small ribosomal protein 4 [Plagiochila acanthocaulis] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKALKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 TIRNKQK 144 >gi|283549380|dbj|BAI66352.1| small ribosomal protein 4 [Jungermannia subulata] Length = 188 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 14/149 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKVLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYIS 169 VK K K + + + L ++ +P +++ Sbjct: 131 AVKNKQKSQSIITKNINLFQKSKIPSHLT 159 >gi|212004175|gb|ACJ15396.1| Rps4 [Pellaea lyngholmii] Length = 182 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 15 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 74 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 132 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 133 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 180 >gi|32401783|gb|AAP80880.1| small ribosomal protein 4 [Cedrus deodara] Length = 187 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 26 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + + + + L +RD Sbjct: 85 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRSIIKKNIDLFQRD 144 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 145 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 185 >gi|67036054|gb|AAY62953.1| small ribosomal protein subunit 4 [Bryoandersonia illecebra] Length = 190 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 132 >gi|86438872|emb|CAJ55416.1| small ribosomal protein 4 [Plagiochila acanthocaulis] Length = 196 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKALKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 137 Query: 142 EVKQKSK 148 ++ K K Sbjct: 138 TIRNKQK 144 >gi|78102677|gb|ABB21552.1| small ribosomal protein 4 [Plagiochila junghuniana] Length = 189 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQVLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY CK GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCKPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRAIVT 143 >gi|99639975|emb|CAJ45132.1| putative ribosomal protein S4 gene [Culcita coniifolia] Length = 188 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P R Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 3 LTGKATNPGEARVAA----DQSASRKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 56 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T + LE RLD ++ + TI AARQ VNHRH+LVN R V+I SYRCK Sbjct: 57 KTKGSTGQVPLQLLEMRLDNTIFHSGMTSTIPAARQLVNHRHILVNDRIVDIPSYRCKPK 116 Query: 139 DVIEVKQKSKQL----ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 D+I V+ + + + E+S+ + +S++ DN V ++ + + + Sbjct: 117 DIITVRDRPTSCNGPRSGINESSRGDKTPDHLTLSLSEDNRPKGLVNRIANRESIELNI- 175 Query: 195 MQPNLVVEFYSR 206 LVVE+YSR Sbjct: 176 -NELLVVEYYSR 186 >gi|45271068|gb|AAS56922.1| ribosomal protein small subunit 4 [Adiantum raddianum] Length = 187 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 36 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V ++ L + Sbjct: 95 GIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPSDIITIRNRPTSY-NVAKSESLERDE 153 Query: 164 VPEYISVN 171 VP++++++ Sbjct: 154 VPDHLTLS 161 >gi|314906639|gb|ADT61838.1| ribosomal protein subunit 4 [Scleropodium obtusifolium] Length = 168 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 19 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 77 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 78 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 122 >gi|59803295|gb|AAX07756.1| Rps4 [Conocephalum conicum] Length = 153 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 5/153 (3%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ ++G ++E++ + A +++G T L+ LE RLD I++R PTI ARQ Sbjct: 3 KQKLRFHFG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQ 61 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 VNHRH+L+N +V+I SY CK DVI +K + K + + + + +P ++S + Sbjct: 62 LVNHRHILINNITVDIPSYNCKPKDVITIKDRQKSQSIITKNLKSFQKSKIPNHLSFDLI 121 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +I ++ Y I + LVVE+YSR Sbjct: 122 QIKGLVNQIID--REWIYLKINEL-LVVEYYSR 151 >gi|125662688|gb|ABN50294.1| small ribosomal protein 4 [Cedrus atlantica] Length = 185 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 24 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + + + + L +RD Sbjct: 83 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRSIIKKNIDLFQRD 142 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 143 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 183 >gi|50235340|gb|AAT70703.1| Rps4 [Clasmatodon parvulus] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRK 137 >gi|118724385|gb|ABL10766.1| ribosomal protein small subunit 4 [Pellaea wrightiana] Length = 184 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 17 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 76 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 134 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 135 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 182 >gi|78102671|gb|ABB21549.1| small ribosomal protein 4 [Plagiochila hirta] Length = 189 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKALKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 TIRNKQK 137 >gi|18920745|gb|AAL82417.1| ribosomal protein system 4 [Isopterygiopsis muelleriana] Length = 196 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQSPEMRLDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAII 143 >gi|7576565|gb|AAF63895.1| ribosomal protein system 4 [Clasmatodon parvulus] Length = 190 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRK 133 >gi|212004201|gb|ACJ15409.1| Rps4 [Pellaea truncata] Length = 185 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 18 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 77 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 135 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 136 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 183 >gi|63101101|gb|AAY33175.1| small ribosomal protein 4 [Pseudotrismegistia perundulata] Length = 188 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+L+N V+I SYRCK D I +K + K + + + ++ Sbjct: 86 GMAPTIPGARQLVNHRHILINDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 145 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 146 KIPNHLTYNSLEKKGLINQI---LDRESIGLKINELLVVEYYSR 186 >gi|26399170|sp|Q9FSD9|RR4_PELNE RecName: Full=30S ribosomal protein S4, chloroplastic gi|10933881|emb|CAC14050.1| small ribosomal protein 4 [Pellia neesiana] Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 22/213 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMK 59 MS+ + KI RR+G L G + S G GQ +K S + ++L KQK++ Sbjct: 1 MSRYRGPRTKIIRRLGA-LPGLTSKILELES---GYIGQSTPNKKVSQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A +++G T L LE RLD I++R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARKAKGSTGQILSQTLEMRLDNIIFRLGMSPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVN----HD 173 H+L+N +V+I SY C+ DVI V + + SV+ + + R VP +++ + Sbjct: 116 HILINDNTVDIPSYNCEPKDVITVNNRKE---SVIIKNMDSSRKPKVPNHLTFDSIRFRG 172 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ T R LK + LVVE+YSR Sbjct: 173 SVNQTIDRECIDLK-------INELLVVEYYSR 198 >gi|260677422|ref|YP_003208190.1| ribosomal protein S4 [Coix lacryma-jobi] gi|209361360|gb|ACI43275.1| ribosomal protein S4 [Coix lacryma-jobi] Length = 201 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVN R V+I S+RCK D+I K Q+SK+L AS Sbjct: 98 LGMASTIPGARQLVNHRHILVNDRIVDIPSFRCKPRDIITTKDNQRSKRLVQNYIASSDP 157 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P++++V+ +I L + + LVVE+YSR Sbjct: 158 GK-LPKHLTVDTLQYKGLVKKI---LDRKWVGLKINELLVVEYYSR 199 >gi|50235364|gb|AAT70715.1| Rps4 [Brachytheciastrum fendleri] Length = 190 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRK 132 >gi|52694762|gb|AAU85550.1| Rps4 [Brachytheciastrum trachypodium] gi|52694764|gb|AAU85551.1| Rps4 [Brachytheciastrum venustum] Length = 190 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRK 132 >gi|294337084|emb|CAQ52692.1| ribosomal protein S4 [Bryolawtonia vancouveriensis] Length = 202 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|118724413|gb|ABL10780.1| ribosomal protein small subunit 4 [Pellaea longipilosa] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A +RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARXTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + ++ Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KSKS 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ + V ++ + V + LVVE+YSR Sbjct: 146 LGRNEVPDHLTLSISKTSEPTGLVNHMANRESVNLDI--NELLVVEYYSR 193 >gi|89147822|gb|ABD62759.1| ribosomal protein 4 [Apotreubia nana] Length = 183 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A +++G T L+ LE RLD I++R Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVDIARKAKGSTGEVLLQLLEMRLDNIIFRL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 TI ARQ VNHRH+L+N ++VN+ SY CK D+I V+ + Sbjct: 80 GLAFTIPGARQLVNHRHILINNKTVNVPSYNCKPKDIITVQNR 122 >gi|52788781|gb|AAU87371.1| ribosomal protein small subunit 4 [Adiantum raddianum] Length = 188 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 37 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V ++ L + Sbjct: 96 GIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPSDIITIRNRPTSY-NVAKSESLERDE 154 Query: 164 VPEYISVN 171 VP++++++ Sbjct: 155 VPDHLTLS 162 >gi|294337140|emb|CAQ52720.1| ribosomal protein S4 [Heterocladium heteropterum] Length = 202 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G RS ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTPQLRS--GSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRPDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ VP+ Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKVPDHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|117306744|emb|CAH73340.1| ribosomal protein S4 [Lepyrodon lagurus] Length = 180 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A R++G T + E RLD +++R Sbjct: 22 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARRAKGSTGEVSLQLPEMRLDNVIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 81 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSEAII 130 >gi|212004241|gb|ACJ15429.1| Rps4 [Cheilanthes pringlei] Length = 182 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F ++L AKQ+++ YG ++E++ + A +RG T + LE RLD ++++ Sbjct: 24 FCVRLEAKQRLRLNYG-LTERQLLKYVRIARITRGSTGQVPLQLLEMRLDNVIFQLNMAS 82 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ V+HRH+LVN R V+I SYRCK D+I ++ + +V ++ + +VP++ Sbjct: 83 TIPAARQLVSHRHILVNHRIVDIPSYRCKPKDIITIRNRPTSYNAV-KSESFGKDEVPDH 141 Query: 168 ISV 170 +++ Sbjct: 142 LTL 144 >gi|189485111|ref|YP_001956052.1| 30S ribosomal protein S4 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|226695096|sp|B1GZA9|RS4_UNCTG RecName: Full=30S ribosomal protein S4 gi|170287070|dbj|BAG13591.1| 30S ribosomal protein S4 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 208 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 19/204 (9%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 +R SS ++R+ G+N PG HG K K S + LR KQK ++ Y Sbjct: 24 ERCSSNCALNRKRGKN--------------SPGQHGAS-KVKMSDYAKHLREKQKARRMY 68 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++F + +K A++ +G NL+ LE RLD +VYR + ARQ VNH ++L Sbjct: 69 G-LTEEQFSNYYKTAEKMKGSAGDNLLKLLELRLDNVVYRLGLASSKKMARQIVNHGNIL 127 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 VN + +++ YR K GDVI +K K + + + +P ++S + + T V Sbjct: 128 VNEKKIDVPRYRLKIGDVITFPEKYKSNVIIKKLIEKMVSSIPAWLSFDKSRIAGTVVSE 187 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P + + +P+ Q L+VE+YS+ Sbjct: 188 PLA-GETSHPINSQ--LIVEYYSK 208 >gi|78102719|gb|ABB21573.1| small ribosomal protein 4 [Plagiochila salacensis] Length = 189 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQVLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY CK GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCKPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRAIVT 143 >gi|49182726|gb|AAT57825.1| small ribosomal protein [Isotachis lyallii] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDNI 130 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM-VATFVRIPSSLKDVPYPVIMQPNL 199 V+ + K + + + L +P +++ D+M + FV ++ + + L Sbjct: 131 TVRNRQKSQSIITKNINLFPNSKIPSHLTF--DSMKLRGFVN--QTINRELINLKINELL 186 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 187 VVEYYSR 193 >gi|118724407|gb|ABL10777.1| ribosomal protein small subunit 4 [Pellaea calomelanos] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYTAA-KGKS 145 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 146 FGRDEVPDHLTL 157 >gi|78102681|gb|ABB21554.1| small ribosomal protein 4 [Plagiochilion oppositum] Length = 189 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 13/134 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLE 155 ++ K K + +++ Sbjct: 131 TIRNKQKSQSIIIK 144 >gi|37992689|gb|AAR06523.1| small ribosomal protein 4 [Squamidium nigricans] Length = 192 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD I++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTMKNQRK 134 >gi|78102707|gb|ABB21567.1| small ribosomal protein 4 [Plagiochila parvifolia] Length = 189 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 IIGNKQKSRSIVT 143 >gi|67036030|gb|AAY62941.1| small ribosomal protein subunit 4 [Schwetschkea grateloupii] Length = 199 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTIKNQRK 141 >gi|50235362|gb|AAT70714.1| Rps4 [Brachytheciastrum collinum] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRK 137 >gi|212004195|gb|ACJ15406.1| Rps4 [Pellaea ternifolia] Length = 181 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 14 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 72 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 73 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 131 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 132 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 179 >gi|78102691|gb|ABB21559.1| small ribosomal protein 4 [Plagiochila massalongoana] Length = 189 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQVLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY CK GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCKPGDII 130 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 131 TIGNKQKSRAIV 142 >gi|118625939|emb|CAL39291.1| small ribosomal protein 4 [Neesioscyphus argillaceus] Length = 202 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTGKTLKQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDNI 137 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM-VATFVRIPSSLKDVPYPVIMQPNL 199 V+ + K + + + L +P +++ D+M + FV ++ + + L Sbjct: 138 TVRNRQKSQSIITKNINLFPNSKIPSHLTF--DSMKLRGFVN--QTINRELINLKINELL 193 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 194 VVEYYSR 200 >gi|50235346|gb|AAT70706.1| Rps4 [Brachythecium leibergii] gi|50235368|gb|AAT70717.1| Rps4 [Brachythecium velutinum] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRK 137 >gi|50235354|gb|AAT70710.1| Rps4 [Brachythecium bellicum] Length = 195 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITMKNQRK 137 >gi|212004219|gb|ACJ15418.1| Rps4 [Paragymnopteris marantae] Length = 186 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 24 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 83 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIESFGRDQ 141 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 142 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 184 >gi|212004215|gb|ACJ15416.1| Rps4 [Paragymnopteris marantae] Length = 187 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 25 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 84 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIESFGRDQ 142 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|227345139|gb|ACP28122.1| small ribosomal protein 4 [Clasmatocolea trachypus] Length = 189 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 PGLTSTTLKRKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-MTERQLLKYMRIARKAK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 65 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 124 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNL 199 V+ K K + + + L ++ +P +++ + + + + + D + + + L Sbjct: 125 TVRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSV----NQMIDREWINLKINELL 180 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 181 VVEYYSR 187 >gi|118724397|gb|ABL10772.1| ribosomal protein small subunit 4 [Paragymnopteris marantae] Length = 190 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ S K S F ++L AKQ+++ YG ++E++ + A Sbjct: 3 PGLAGKENASNLGEFRVAGDLPASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIAR 61 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T + LE RLD ++++ V TI AARQ VNHRH+LVN R V+I SYR K Sbjct: 62 KTRGSTGQVPLQLLEMRLDNVIFQLGMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPK 121 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + +V + VP++ +S++ N V ++ + V + Sbjct: 122 DIITIRNRPTSYNAV-KIESFGRDQVPDHLTLSISKANEPTGLVNHMANRESVNLDI--N 178 Query: 197 PNLVVEFYSR 206 LVVE++SR Sbjct: 179 ELLVVEYHSR 188 >gi|63191669|gb|AAY34796.1| small ribosomal protein subunit 4 [Pseudopterobryum tenuicuspis] Length = 181 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 2/127 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D+I +K + K +++ + ++ Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDLITIKDQRKSETIIIKNIEFYQKS 156 Query: 164 -VPEYIS 169 +P +++ Sbjct: 157 KIPNHLT 163 >gi|212004213|gb|ACJ15415.1| Rps4 [Paragymnopteris marantae] Length = 187 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 25 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 84 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIESFGRDQ 142 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|78102705|gb|ABB21566.1| small ribosomal protein 4 [Plagiochila pachyloma] Length = 189 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKALKSKSSYIDRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI A Q VNHRH+ +N V+I SY C GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGAXQXVNHRHISINNDIVDIPSYNCXPGDII 130 Query: 142 EVKQKSKQLASV 153 V+ + K + V Sbjct: 131 TVRNEQKSQSXV 142 >gi|212004209|gb|ACJ15413.1| Rps4 [Paragymnopteris marantae] Length = 187 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 25 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 84 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIESFGRDQ 142 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|63191665|gb|AAY34794.1| small ribosomal protein subunit 4 [Rozea pterogonioides] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRXDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I VK + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDYMVDIPSYRCKPQDFITVKNQRK 144 >gi|212004211|gb|ACJ15414.1| Rps4 [Paragymnopteris marantae] Length = 188 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 26 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 85 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIESFGRDQ 143 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 144 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|306773454|emb|CBJ55303.1| putative ribosomal protein small subunit 4 [Alsophila imrayana] Length = 162 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 11 PGL-----TRKMSQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 64 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 65 MRLDNIIFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 115 >gi|222103458|gb|ACM44258.1| small ribosomal protein subunit 4 [Pleurozium schreberi] Length = 197 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH H+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHTHILVNDCIVDIPSYRCKPQDFITIKNQRK 139 >gi|270356482|gb|ACZ80496.1| ribosomal protein 4 [Ephedra major subsp. procera] Length = 158 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 1 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 60 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 119 Query: 162 ---RDVPEYISVN 171 VP Y++ N Sbjct: 120 KNRNRVPHYLTFN 132 >gi|294337216|emb|CAQ52757.1| ribosomal protein S4 [Neckera remota] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTSQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + +L ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|270356494|gb|ACZ80502.1| ribosomal protein 4 [Ephedra sarcocarpa] Length = 157 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + + L+ KQK++ +YG ++E++ R A ++G T L+ LE RLD I++R Sbjct: 1 KKSQYLVCLQEKQKIRFHYG-LTERQLRQYVHIAKNAQGSTGQVLLQLLEMRLDNILFRL 59 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-- 161 TI ARQ VNHRH+LVN V+I SYRCK D+I +K K + + + Sbjct: 60 GIARTIPGARQLVNHRHILVNHHIVDIPSYRCKPQDIITLKGKDPERLRIRMKKSWGQLW 119 Query: 162 ---RDVPEYISVN 171 VP Y++ N Sbjct: 120 KNRNRVPHYLTFN 132 >gi|228480564|gb|AAY62917.2| small ribosomal protein subunit 4 [Pleurozium schreberi] Length = 194 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRJARKAKGSTGEVLSQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH H+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHTHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|66990672|emb|CAI29114.1| small ribosomal protein 4 [Plagiochila barteri] Length = 198 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRSDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 + + K + V + L ++ +P +++ + + Sbjct: 138 TIGTEQKSQSIVTKNINLFQKLKIPSHLTFDSTQL 172 >gi|42556470|gb|AAS19830.1| small ribosomal protein 4 [Nowellia sp. He-Nygren 1097] Length = 190 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 PGLSSKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 65 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD V+R PTI ARQ VNH H+ +N ++I SY C+ GD+I Sbjct: 66 GSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHGHISMNNNIIDIPSYNCQPGDII 125 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + + L ++ P +++ + + + + + + + LV Sbjct: 126 TIRNKLESRSMITKNINLFQKLKTPSHLTFDLTELQGS---VNQMINREWVNLKINELLV 182 Query: 201 VEFYSR 206 VE+YSR Sbjct: 183 VEYYSR 188 >gi|328541030|gb|AEB21739.1| ribosomal protein S4 [Pseudocephalozia lepidozioides] Length = 199 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ K K + + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTGKAPKQKSGFNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD + R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVSLQLLEMRLDNTILRLGMAPTIPGARQLVNHRHISINKNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + L + +P +++ + + F I + + + LV Sbjct: 135 TIRDKQKSQSVITRNINLFQNLKIPSHLTFDP---IKLFGSINQIINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|49182760|gb|AAT57842.1| small ribosomal protein [Metzgeria sp. Davis 361] Length = 195 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKIFKSKSSYIDRPASNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R VPTI AARQ VNH H+ +N V+I SY CK GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNTIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCKPGDII 130 Query: 142 EVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K + + ++E + + + +P +++ + M+ + +I + + + LV Sbjct: 131 TIKNQKIYRSIIMETLNSIQKPGIPNHLAFDSTKMIGSVNQI---IHREWIDLKINELLV 187 Query: 201 VEFYSR 206 VE+Y R Sbjct: 188 VEYYFR 193 >gi|118724445|gb|ABL10796.1| ribosomal protein small subunit 4 [Pellaea gleichenioides] Length = 188 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRINYG-LTERQLLNYVRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 80 VIFQLGMASTIPAARQLVNHRHILVNCRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKF 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 LGRAEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|294337116|emb|CAQ52708.1| ribosomal protein S4 [Forsstroemia trichomitria] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 200 >gi|253729559|ref|YP_003029742.1| ribosomal protein S4 [Bambusa oldhamii] gi|255961385|ref|YP_003097578.1| ribosomal protein S4 [Dendrocalamus latiflorus] gi|246367069|gb|ACS94680.1| ribosomal protein S4 [Bambusa oldhamii] gi|255040262|gb|ACT99922.1| ribosomal protein S4 [Dendrocalamus latiflorus] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 13/209 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVA 177 +LVN R V+I S+RCK D+I K Q + L + +A D +P++++++ Sbjct: 116 ILVNRRIVDIPSFRCKPRDIITT--KDNQRSKCLVQNSIASSDPGKLPKHLTIDTLQYKG 173 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 174 LVKKI---LDRKWVGLKINELLVVEYYSR 199 >gi|111283704|gb|ABH09202.1| small ribosomal protein 4 [Goebelobryum unguiculatum] Length = 188 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 14/151 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ + K SY + ++L KQK++ ++G ++E++ + A ++ Sbjct: 14 PGLTGKTLRPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHHG-LTERQLLKYVRIARGAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD I Sbjct: 73 GSTGQVLLQLFEMRLDNTIFRLGMASTIPEARQLVNHRHILINNNIVDIPSYNCEPGDTI 132 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVN 171 VK + K + ++ L ++ +P +++++ Sbjct: 133 TVKTEQKSQSMIIRNINLFQKSKIPSHLTLD 163 >gi|49182807|gb|AAT57865.1| small ribosomal protein [Telaranea pulcherrima] Length = 196 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 20 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTILRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPGDLI 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 131 TIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---IDQTINREWIDLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|306773478|emb|CBJ55315.1| putative ribosomal protein small subunit 4 [Sphaeropteris celebica] Length = 163 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 12 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVSLQLLE 65 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 66 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 116 >gi|306773460|emb|CBJ55306.1| putative ribosomal protein small subunit 4 [Alsophila stelligera] Length = 160 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 9 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVSLQLLE 62 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 63 MRLDNIIFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 113 >gi|162423598|gb|ABX89571.1| small ribosomal protein 4 [Agathis alba] Length = 216 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVN R V+ SYRC DVI +K + + Sbjct: 71 QLLEMRLDNIIFRLDMTLTIPGARQLVCHRHILVNSRIVDKPSYRCNPYDVITIKDQQR 129 >gi|118724503|gb|ABL10825.1| ribosomal protein small subunit 4 [Notholaena californica] Length = 191 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 83 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAA-KGKS 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L ++P++ +S++ N V ++ + V + LVVE++SR Sbjct: 142 LGRDEIPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 189 >gi|47606882|gb|AAT36361.1| ribosomal protein subunit 4 [Ancistrodes genuflexa] Length = 199 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E+R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPETRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 97 GMTPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRKSEAIIGKNIEFYQKY 156 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 157 KIPNHLTYNLLEKKGLVNQILDRESISLK-------INELLVVEYYSR 197 >gi|294337267|emb|CAQ52782.1| ribosomal protein S4 [Taiwanobryum robustum] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D+I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRKSETIISKNMEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|7576623|gb|AAF63924.1| ribosomal protein system 4 [Homalotheciella subcapillata] Length = 190 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+L+N V+I SYRCK D + +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILINDCIVDIPSYRCKPQDFVTIKNQRK 133 >gi|118724469|gb|ABL10808.1| ribosomal protein small subunit 4 [Cheilanthes feei] Length = 195 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 78/128 (60%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ ++ +V + + Sbjct: 92 NMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRTTSYNAV-KGESFGRDE 150 Query: 164 VPEYISVN 171 VP++++++ Sbjct: 151 VPDHLTLS 158 >gi|306773462|emb|CBJ55307.1| putative ribosomal protein small subunit 4 [Alsophila tricolor] Length = 162 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 11 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 64 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 65 MRLDNIIFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 115 >gi|37992423|gb|AAR06390.1| small ribosomal protein 4 [Ancistrodes genuflexa] Length = 194 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E+R D I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPETRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 92 GMTPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRKSEAIIGKNIEFYQKY 151 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 152 KIPNHLTYNLLEKKGLVNQILDRESISLK-------INELLVVEYYSR 192 >gi|67035984|gb|AAY62918.1| small ribosomal protein subunit 4 [Ptilium crista-castrensis] Length = 194 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH H+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHTHILVNDCIVDIPSYRCKPQDFITIKNQRK 136 >gi|306773452|emb|CBJ55302.1| putative ribosomal protein small subunit 4 [Alsophila havilandii] gi|306773456|emb|CBJ55304.1| putative ribosomal protein small subunit 4 [Alsophila pachyrrhachis] Length = 163 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 12 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 65 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 66 MRLDNIIFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 116 >gi|222103446|gb|ACM44252.1| small ribosomal protein subunit 4 [Pleurozium schreberi] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L LE RLD +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH H+LVN V+I SYRCK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHTHILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|118626075|emb|CAL39341.1| small ribosomal protein 4 [Odontoschisma macounii] Length = 202 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLRSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD V+R PTI ARQ VNHRH+ +N ++I SY C+ GDVI Sbjct: 78 GSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHRHISINNDIIDIPSYDCEPGDVI 137 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L+++ +P +++ + + + +I + +LK + Sbjct: 138 TIKDKQKSRSIITKNINLSQKSKIPSHLTFDLTQLQGSVDQIVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|16930552|gb|AAL31957.1| ribosomal protein small subunit 4 [Onocleopsis hintonii] Length = 170 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F +L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 8 KISQFCGRLEAKQRLRFNYG-LTERQPLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHL 66 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ VNHRH+LVN R V+I SYRCK D+ + + + L L Sbjct: 67 GMASTIPAARQLVNHRHILVNSRVVDIPSYRCKPKDITTARNRPTS-CNALRGESLGGDK 125 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ S++ N V ++ + + + LVVE+Y R Sbjct: 126 TPDHLTASISEGNGPXGLVNRVANRESINLNI--NEXLVVEYYPR 168 >gi|51458170|gb|AAU03433.1| ribosomal protein small subunit 4 [Asplenium richardii] Length = 189 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+RG T L+ LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVLLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 +++ TI ARQ VNHRH+LVN V+I SYRCK D+I ++ + Sbjct: 81 VLFHLGMASTIPXARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNR 128 >gi|328541056|gb|AEB21752.1| ribosomal protein S4 [Kurzia gonyotricha] Length = 200 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKQKSGYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVSLQLLEMRLDNTILRLGMASTIPGARQLVNHRHIPINNDIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +++K K + V + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIREKQKSQSVVTKNINLFQNLKIPSHLTFDSMKLCGS---INQTINRESIDLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|48527385|gb|AAT45825.1| small ribosomal protein 4 [Plagiochila lastii] Length = 195 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 14/155 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTVKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNM 175 + + K ++V + + + +P +++ + + Sbjct: 138 TIGNEQKSRSAVTKNVNSFQKLKIPSHLTFDSTQL 172 >gi|118626055|emb|CAL39336.1| small ribosomal protein 4 [Nowellia curvifolia] Length = 191 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLSNKTLKSKSNYIDPSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD +R PTI ARQ VNH H+ +N ++I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTXFRLGMAPTIPGARQLVNHGHISMNNNIIDIPSYNCQPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + + L ++ P +++ N + + + + + + LV Sbjct: 127 TIRNKLESRSMITKNINLFQKLKTPSHLTFNLTELQGS---VNQMINREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|78102715|gb|ABB21571.1| small ribosomal protein 4 [Plagiochila ramosissima] Length = 124 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 2 SQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGM 60 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+ +N V+I SY C+ GD+I ++ K K Sbjct: 61 SPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIITIRNKQK 103 >gi|75858236|gb|ABA28692.1| small ribosomal protein 4 [Plagiochilion conjugatum] Length = 191 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH+H+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHKHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + + +P +++ + + + + + + + LV Sbjct: 127 TIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|228016849|gb|ACP51675.1| ribosomal protein S4 [Pinus attenuata] Length = 201 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E+ + A R++G Sbjct: 19 PGLTSKRPKNRKDPMNRSSSRKISQYRIRLEEKQKLRYHYG-LTERHLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE LD I++R PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMCLDNILFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + A+ + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQQRLRANNKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-INLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|306773470|emb|CBJ55311.1| putative ribosomal protein small subunit 4 [Cyathea poeppigii] gi|306773480|emb|CBJ55316.1| putative ribosomal protein small subunit 4 [Sphaeropteris glauca] gi|306773488|emb|CBJ55320.1| putative ribosomal protein small subunit 4 [Sphaeropteris robusta] Length = 160 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 9 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 62 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 63 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 113 >gi|37992425|gb|AAR06391.1| small ribosomal protein 4 [Ancistrodes genuflexa] Length = 185 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E+R D I++R Sbjct: 24 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPETRSDNIIFRL 82 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 83 GMTPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKDQRKSEAIIGKNIEFYQKY 142 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R SLK + LVVE+YSR Sbjct: 143 KIPNHLTYNLLEKKGLVNQILDRESISLK-------INELLVVEYYSR 183 >gi|67035957|gb|AAY62905.1| small ribosomal protein subunit 4 [Circulifolium microdendron] Length = 192 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 90 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 134 >gi|67036076|gb|AAY62964.1| small ribosomal protein subunit 4 [Bestia vancouveriensis] Length = 194 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|306773482|emb|CBJ55317.1| putative ribosomal protein small subunit 4 [Sphaeropteris horrida] Length = 159 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 8 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 61 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 62 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 112 >gi|306773468|emb|CBJ55310.1| putative ribosomal protein small subunit 4 [Cyathea multiflora] Length = 160 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 9 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 62 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 63 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 113 >gi|222103452|gb|ACM44255.1| small ribosomal protein subunit 4 [Plagiothecium platyphyllum] Length = 203 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 13/159 (8%) Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R +K++ +YG I+E++ + + A +++G T L+ LE RLD +++R PTI A Sbjct: 51 RKNKKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE---YI 168 RQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ +P Y Sbjct: 110 RQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYS 169 Query: 169 SVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 S+ +V + R LK + LVVE+YSR Sbjct: 170 SLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 201 >gi|42556404|gb|AAS19797.1| small ribosomal protein 4 [Cephalozia bicuspidata] Length = 191 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSNYIDRSTSNKKVSQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N ++I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISMNNNIIDIPSYNCQPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K + + + + L ++ +P ++S + + + ++ + +LK + Sbjct: 127 TIRNKPESRSMISKNINLFQKLKMPSHLSFDLTELQGSVNQMVNREWVNLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|306773474|emb|CBJ55313.1| putative ribosomal protein small subunit 4 [Sphaeropteris aeneifolia] Length = 162 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 11 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 64 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 65 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 115 >gi|306773466|emb|CBJ55309.1| putative ribosomal protein small subunit 4 [Cyathea howeana] Length = 163 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 12 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 65 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 66 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 116 >gi|7576513|gb|AAF63869.1| ribosomal protein system 4 [Forsstroemia trichomitria] Length = 189 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + +L ++ Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKS 147 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 148 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 188 >gi|306773464|emb|CBJ55308.1| putative ribosomal protein small subunit 4 [Cyathea horrida] Length = 158 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 7 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 60 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 61 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 111 >gi|99640035|emb|CAJ45144.1| putative ribosomal protein S4 gene [Metaxya lanosa] Length = 197 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 8/153 (5%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G+ +P TR Q K S F ++L AKQ+++ YG ++E+ R + + A Sbjct: 14 LTGKVSNPGETRVAV----DQSASKKISQFCVRLEAKQRLRFNYG-LTERLLRYV-RIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 +++G T L+ LE R D IV+ + TI AARQ VNHRH++VN R V++ S+RCK Sbjct: 68 KTKGSTGQVLLQLLEMRSDNIVFHSGMASTIPAARQLVNHRHIVVNDRIVDVPSHRCKPK 127 Query: 139 DVIEVKQK-SKQLASVLEASQLAERDVPEYISV 170 D+I V+ + S ++ S + S ++ +P+++++ Sbjct: 128 DIITVRNRPSNKMKSGINDSSRGDK-IPDHLTL 159 >gi|37992525|gb|AAR06441.1| small ribosomal protein 4 [Garovaglia compressa] Length = 194 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + LE RLD I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN V+I SYRCK D I VK + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFIIVKNE 134 >gi|306773458|emb|CBJ55305.1| putative ribosomal protein small subunit 4 [Alsophila salvinii] Length = 163 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 12 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 65 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 66 MRLDNIIFHSGMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 116 >gi|18920751|gb|AAL82420.1| ribosomal protein system 4 [Isopterygium minutirameum] Length = 193 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D+I +K + K + + + ++ Sbjct: 91 GMAATIPGARQLVNHRHILVNDCIVDIPSYRCKPQDLITIKNQRKSETIISKNIEFYQKS 150 Query: 164 -VPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +V + R LK + LVVE+YSR Sbjct: 151 KIPNHLTYNSLEKKGLVNQIIDRESIGLK-------INELLVVEYYSR 191 >gi|47606898|gb|AAT36369.1| ribosomal protein subunit 4 [Garovaglia subelegans] Length = 195 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E+RLD I++R Sbjct: 34 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVSLQLPETRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNE 135 >gi|294337148|emb|CAQ52724.1| ribosomal protein S4 [Himantocladium plumula] Length = 202 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 100 GMAPTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 144 >gi|86438874|emb|CAJ55408.1| small ribosomal protein 4 [Plagiochila andina] Length = 192 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNH+H+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHKHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIVT 150 >gi|78102675|gb|ABB21551.1| small ribosomal protein 4 [Plagiochila javanica] Length = 189 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 131 TIGNKQKSRAIV 142 >gi|328541084|gb|AEB21766.1| ribosomal protein S4 [Telaranea herzogii] Length = 197 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K+ RR+G L G +PKS N RS K S + ++L KQK++ YYG Sbjct: 5 KVIRRLGA-LPGLTSKTLKPKSSYNDRSTS--------NKKISQYRIRLEEKQKLRFYYG 55 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD + TI ARQ VNHRH+ + Sbjct: 56 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILCLGMARTIPGARQLVNHRHIPI 114 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++++ + + + Sbjct: 115 NDNIVDIPSYNCEPGDIITIRDKQKSQSVITKNMNLFQNLKIPNHLTLDS---IKSCGFV 171 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 172 NQTINREWINLKINELLVVEYYSR 195 >gi|7576587|gb|AAF63906.1| ribosomal protein system 4 [Helicodontium capillare] Length = 190 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D + +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFVTMKNQRK 133 >gi|194738544|gb|ACF93829.1| small ribosomal protein 4 [Leptoscyphus porphyrius] Length = 177 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDQIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|67035964|gb|AAY62908.1| small ribosomal protein subunit 4 [Taiwanobryum speciosum] Length = 196 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D+I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDLITIKDQRK 138 >gi|78102627|gb|ABB21527.1| small ribosomal protein 4 [Plagiochila andina] Length = 183 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNH+H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHKHISINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSRSIVT 143 >gi|80974146|gb|ABB53766.1| small ribosomal subunit protein 4 [Garovaglia angustifolia] Length = 202 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 4/146 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G RS ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG-TLPGLTNKIPQVRS--SSINQSTSNKKISQYRVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T + LE RLD I++R PTI R VNH H Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRLGMAPTIPXXRXLVNHXH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQK 146 +LVN VNI SYRCK DVI VK + Sbjct: 117 ILVNDXIVNIPSYRCKPQDVIIVKNE 142 >gi|66990660|emb|CAI29108.1| small ribosomal protein 4 [Plagiochila squamulosa] Length = 198 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 138 TIGNKQKSRAIV 149 >gi|32401777|gb|AAP80877.1| small ribosomal protein 4 [Tsuga caroliniana] Length = 188 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 96/182 (52%), Gaps = 13/182 (7%) Query: 34 PGLHGQRRKS--------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTS 85 PGL +R KS K S + ++ KQK++ YG ++E++ + A R++G T Sbjct: 9 PGLTSKRPKSRNDSINRRKISQYRIRPEEKQKLRFNYG-LTERQLLKYVRIARRAKGSTG 67 Query: 86 HNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 L+ LE R D I++R PTI ARQ VNH H+ VN V+I SY CK DVI ++ Sbjct: 68 QVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRD 127 Query: 146 KSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 + + + + + L +RD +P++++ N +I S K + + LVVE+Y Sbjct: 128 QQRLRSIIRKNIDLFQRDKLPKHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYY 184 Query: 205 SR 206 SR Sbjct: 185 SR 186 >gi|7576619|gb|AAF63922.1| ribosomal protein system 4 [Pilosium chlorophyllum] Length = 190 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AER 162 TI ARQ VNHRH+LVN V+I SY+CK D I +K + K A + + + E Sbjct: 89 GMATTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQQKFEAIISKNIEFYQES 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ N +I L + + LVVE+YSR Sbjct: 149 KVPNHLTYNSLGKKGLVNQI---LDRESIGLKINELLVVEYYSR 189 >gi|212004167|gb|ACJ15392.1| Rps4 [Pellaea breweri] Length = 187 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 7/172 (4%) Query: 38 GQRRKSKPSY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 G + SK + F ++L AKQ+++ YG ++E++ + A R+RG T + LE RL Sbjct: 18 GDQSASKKIFQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRL 76 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 77 DNVIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KV 135 Query: 157 SQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 136 ESFGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|328541066|gb|AEB21757.1| ribosomal protein S4 [Kurzia helophila] Length = 199 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T + LE RLD + R Sbjct: 37 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVSLQLLEMRLDNTILRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD+I +++K K + + + L + Sbjct: 96 GMASTIPGARQLVNHRHIPINNDIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNL 155 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + I ++ + + LVVE+YSR Sbjct: 156 KIPSHLTFDSIKLCGS---IDQTINRESIDLKINELLVVEYYSR 196 >gi|32401872|gb|AAP80924.1| small ribosomal protein 4 [Sequoiadendron giganteum] Length = 196 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 21/170 (12%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 35 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 93 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---V 164 +I ARQ VNHRH+L N R V+I SYRCK D I +K K + + ++D V Sbjct: 94 SIPEARQLVNHRHILXNNRIVDIPSYRCKPQDFISIKDKQRLRNIININIDNFQKDKMRV 153 Query: 165 PEYISV-----NHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++++ + +V + RI + ++ LVVE+YSR Sbjct: 154 PPHLNLIKKKSQYSGLVKKIIDNSRIGLKINEL---------LVVEYYSR 194 >gi|41323131|gb|AAR99795.1| small ribosomal protein 4 [Plagiochila semidecurrens] Length = 202 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNH H+ +N VNI SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHGHISINNDIVNIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSQSIVT 150 >gi|41323133|gb|AAR99796.1| small ribosomal protein 4 [Plagiochila sandei] Length = 202 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R PT+ ARQ VNH H+ +N V+I SY C+ GD I Sbjct: 78 GSTGQVLLQLLEMRLDNTILRLGMSPTVPGARQLVNHGHISINNDMVDIPSYNCEPGDSI 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 ++ + K + V + + + +P +++ + + + + + D + + +Q N Sbjct: 138 TIRNEQKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGSV----NQMIDREW-INLQINEL 192 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 193 LVVEYYSR 200 >gi|125662692|gb|ABN50296.1| small ribosomal protein 4 [Pseudolarix amabilis] Length = 195 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 15/169 (8%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 34 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 93 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 152 Query: 164 -VPEYI---SVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P ++ S+ + ++ + D + + ++ N LVVE+YSR Sbjct: 153 KLPNHLTFHSLQYKGLINQII-------DTKW-ITLKINELLVVEYYSR 193 >gi|23477330|gb|AAN34641.1| ribosomal protein small subunit 4 [Woodwardia kempii] Length = 185 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 8/188 (4%) Query: 21 GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS 80 GR K+P N + L Q K S ++ AKQ ++ YG ++E++ + A ++ Sbjct: 2 GRGKTP-NLGEFRVALD-QSXSRKISXGCVRXEAKQTLRLNYG-LTERQLLKYVRIARKT 58 Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 RG T LE RLD I++R TI AARQ VNHRH+LVN R V++ SYRCK D+ Sbjct: 59 RGSTGQVPPQLLEMRLDNIIFRLGMASTIPAARQLVNHRHILVNNRIVDVPSYRCKPKDI 118 Query: 141 IEVKQKSKQLASVLEASQLAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 I + + + L + P+++ S+ N V ++ + V + Sbjct: 119 ITARNRPTS-CNALRGESPGGSETPDHLTASLXEGNRPTGLVNRIANRESVNLDI--NEL 175 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 176 LVVEYYSR 183 >gi|26399188|sp|Q9M4C0|RR4_HAPHO RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017362|emb|CAB92130.1| small ribosomal protein 4 [Haplomitrium hookeri] Length = 202 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 40/223 (17%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSY------------F 48 MS+ + KI RR+G PGL + +SKP Y + Sbjct: 1 MSRYRGPRMKIIRRLGSL---------------PGLTNKVLRSKPGYTDQLISNKKVSQY 45 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 ++L KQK++ +YG ++E++ + A +++G T + L+ LE RLD +++R T Sbjct: 46 RIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGNVLLQLLEMRLDNVIFRLGMSST 104 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEY 167 I ARQ VNHRH+++N V+ Y CK D+I +K S+ + + + ++R P + Sbjct: 105 IPGARQLVNHRHIMINDEMVDTPGYNCKPRDIITLKNISESRSGIPKGIDSSQRSRTPNH 164 Query: 168 ISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 + + V +I SLK + LVVE+YSR Sbjct: 165 LVFDSSRGVGFVNQIIDREWISLK-------INELLVVEYYSR 200 >gi|66990662|emb|CAI29109.1| small ribosomal protein 4 [Plagiochila strictifolia] Length = 197 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 138 TIGNKQKSRAIV 149 >gi|212004243|gb|ACJ15430.1| Rps4 [Cheilanthes sieberi] Length = 188 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD Sbjct: 21 QSAXKKISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 80 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRLTSYNAA-KGKS 138 Query: 159 LAERDVPEYISV 170 +VP+++++ Sbjct: 139 FGRDEVPDHLTL 150 >gi|118724355|gb|ABL10751.1| ribosomal protein small subunit 4 [Pellaea mucronata subsp. californica] Length = 195 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARXTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|118724507|gb|ABL10827.1| ribosomal protein small subunit 4 [Notholaena standleyi] Length = 195 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + L + Sbjct: 92 GMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAA-KGKSLGRDE 150 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ + A V ++ + V + LVVE++SR Sbjct: 151 IPDHLTLSISKTSEPAGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|118625973|emb|CAL39308.1| small ribosomal protein 4 [Gongylanthus scariosus] Length = 202 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + K+ RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKVIRRLGVLPGLTNKTLKPKSGYIDRSIS--------NKKVSQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++E++ + A ++G T L+ LE R D ++R PTI ARQ Sbjct: 53 QKLRFHYG-LTERQLLKYVRIAREAKGSTGQVLLQLLEMRSDNTIFRLGMAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH H+ +N V+I SY C+ GD+I VK K K + + + L P +++++ Sbjct: 112 VNHGHISINNSIVDIPSYNCEPGDIITVKDKRKSRSVITKNINLFRNLRTPSHLTLDSTE 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + ++ + + LVVE+YSR Sbjct: 172 LRGS---VDQTINREWIDLKINELLVVEYYSR 200 >gi|119331574|gb|ABL63113.1| small ribosomal protein subunit 4 [Riccardia palmata] Length = 167 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ ++G ++E++ A +++G T L+ LE RLD ++R Sbjct: 6 KISQYRVRLEEKQKLRFHHG-LTERQLLKYVCVAKKAKGSTGQLLLQLLEMRLDNTIFRL 64 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLEASQLA 160 VPTI AARQ VNHRHVL+N V+I SY CK GD I +K + K +L S + + Q Sbjct: 65 GMVPTIPAARQLVNHRHVLINANMVDIPSYNCKTGDTITIKNRGKNRLKLESNINSVQ-- 122 Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +++ + R ++ + + LVVE+YSR Sbjct: 123 KPGIPNHLAFESMEFRGSVNR---TIDREGIDLKINELLVVEYYSR 165 >gi|46811016|gb|AAT01826.1| small ribosomal protein 4 [Hymenophyton leptopodum] Length = 176 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD IV+R Sbjct: 12 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIVFRL 70 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV-KQKSKQLASVLEASQLAER 162 PTI ARQ VNHRH+ +N V+I SY CK DVI ++ +L + ++ Sbjct: 71 GMAPTIPGARQLVNHRHIPINDDMVDIPSYNCKPEDVITTGNRRESRLIITRNINLFQKQ 130 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + LVVE+YSR Sbjct: 131 KIPNHLTFDSTQFRGS---VNQMIDRECINLKINELLVVEYYSR 171 >gi|16930543|gb|AAL31953.1| ribosomal protein small subunit 4 [Woodwardia areolata] Length = 184 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T LE RLD +++ Sbjct: 22 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNVIFHL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ NHRH+LVN R V+I SYRCK D+I + + + L + Sbjct: 81 GMASTIPAARQLANHRHILVNNRIVDIPSYRCKPKDIITARNRPTS-CNALRGESPRGGE 139 Query: 164 VPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+++ S++ FV ++ + V + LVVE+YSR Sbjct: 140 TPDHLTASLSEGGRPTGFVNRIANRESVNLNI--NELLVVEYYSR 182 >gi|118724437|gb|ABL10792.1| ribosomal protein small subunit 4 [Astrolepis windhamii] gi|118724439|gb|ABL10793.1| ribosomal protein small subunit 4 [Astrolepis windhamii] gi|118724441|gb|ABL10794.1| ribosomal protein small subunit 4 [Astrolepis windhamii] Length = 195 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 LGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|328541052|gb|AEB21750.1| ribosomal protein S4 [Lembidium nutans] Length = 195 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 3 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 53 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D + R TI ARQ VNHRH+ + Sbjct: 54 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPI 112 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + I Sbjct: 113 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGS---I 169 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 170 NQTINRESIDLKINELLVVEYYSR 193 >gi|306773486|emb|CBJ55319.1| putative ribosomal protein small subunit 4 [Sphaeropteris polypoda] Length = 150 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E+ + A +++G T + LE RLD I++ + Sbjct: 4 KISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHS 62 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 63 GMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 103 >gi|42405292|gb|AAS13472.1| rps4 small ribosomal protein [Benitotania elimbata] Length = 193 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD ++++ Sbjct: 32 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFQL 90 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + ++ ++ Sbjct: 91 GMATTIPGARQLVNHRHILVNNFIVDIPSYRCKPQDFITIKNQRKSEVIINKNTEFYKKY 150 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 151 KIPNHLTYSSLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 191 >gi|170516209|gb|ACB15106.1| small ribosomal protein 4 [Nothotsuga longibracteata] Length = 194 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 33 KISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 92 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++++ N +I S K + + LVVE+YSR Sbjct: 152 KLPKHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 192 >gi|63101069|gb|AAY33159.1| small ribosomal protein 4 [Muellerobryum whiteleggei] Length = 195 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN V+I SY+CK D I +K + K Sbjct: 93 GMASTIPGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRK 137 >gi|78102723|gb|ABB21575.1| small ribosomal protein 4 [Plagiochila trapezoidea] Length = 132 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R D ++R Sbjct: 11 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRL 69 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLAS 152 PTI ARQ VNHRH+ +N VNI SY C+ GD+I + KQKS+ + + Sbjct: 70 GMSPTIPGARQLVNHRHISINNDIVNIPSYNCEPGDIITIGNKQKSQSIVT 120 >gi|45271072|gb|AAS56924.1| ribosomal protein small subunit 4 [Bommeria ehrenbergiana] Length = 188 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRINYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + Sbjct: 80 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPNDIITIRNRPTSYNAA-KGES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L ++P++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 LGRNEIPDHLTLSISKTNESTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|306773476|emb|CBJ55314.1| putative ribosomal protein small subunit 4 [Sphaeropteris capitata] Length = 151 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E+ + A +++G T + LE RLD I++ + Sbjct: 5 KISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHS 63 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 64 GMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 104 >gi|49182780|gb|AAT57852.1| small ribosomal protein [Pleurozia purpurea] gi|75858240|gb|ABA28694.1| small ribosomal protein 4 [Pleurozia purpurea] Length = 189 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A + +G T L+ LE RLD ++R Sbjct: 28 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKIKGSTGQLLLQLLEMRLDNTIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 VPTI ARQ VNHRH+L+N V+I SY C+ GDVI +K K + + + +R Sbjct: 87 GMVPTIPGARQLVNHRHILINDNIVDIPSYNCEPGDVIAIKNPEKNQSIITKNMNSFQRP 146 Query: 163 DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P NH + +T R + ++ + + LVVEFYSR Sbjct: 147 KIP-----NHLVLDSTQFRGLVNKTIDRECIDLKINELLVVEFYSR 187 >gi|162423600|gb|ABX89572.1| small ribosomal protein 4 [Agathis dammara] gi|162423602|gb|ABX89573.1| small ribosomal protein 4 [Agathis robusta] Length = 216 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 5/119 (4%) Query: 34 PGLHGQRR----KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLI 89 PGL RR K K S + ++L KQK++ +YG +++++ + A R+ G T L+ Sbjct: 12 PGLTKYRRIDREKEKKSRYRIRLEEKQKLRFHYG-LTDRQLLQYVRIARRAEGSTGEVLL 70 Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 LE RLD I++R TI ARQ V HRH+LVN R V+ SYRC DVI +K + + Sbjct: 71 QLLEMRLDNIIFRLGMTLTIPGARQLVCHRHILVNSRIVDKPSYRCNPYDVITIKDQQR 129 >gi|227345127|gb|ACP28116.1| small ribosomal protein 4 [Chiloscyphus semiteres] Length = 191 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPAARQLVNHGHISINNYIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|78102649|gb|ABB21538.1| small ribosomal protein 4 [Pedinophyllopsis abdita] Length = 165 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 13/127 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 71 GSTGQVLXQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDVI 130 Query: 142 EVKQKSK 148 ++ K K Sbjct: 131 XIRNKQK 137 >gi|320455028|dbj|BAJ65661.1| small ribosomal protein 4 [Metzgeria pubescens] Length = 187 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 14/162 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTFKLKSSYIDRSAPNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 +K + + + ++E + L + +P ++ + + + R+ Sbjct: 131 TIKNQERYRSIIMERLNSLQKPGIPNHLVFDSTKFIGSVNRM 172 >gi|306773450|emb|CBJ55301.1| putative ribosomal protein small subunit 4 [Cyathea dregei] Length = 160 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93 PGL K S F ++L AKQ+++ YG ++E+ + A +++G T + LE Sbjct: 9 PGL-----TRKISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLE 62 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 RLD I++ + TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 63 MRLDNILFHSGMTSTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 113 >gi|118724443|gb|ABL10795.1| ribosomal protein small subunit 4 [Astrolepis sinuata] Length = 193 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 26 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 84 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 85 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 143 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 144 LERDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 191 >gi|23477326|gb|AAN34639.1| ribosomal protein small subunit 4 [Woodwardia harlandii] Length = 185 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 AKQ ++ YG ++E++ + A ++RG T LE RLD I++R TI AAR Sbjct: 33 AKQTLRLNYG-LTERQLLKYVRIARKTRGSTGQVPPQLLEMRLDNIIFRLGMASTIPAAR 91 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYI--SVN 171 Q VNHRH+LVN R V++ SYRCK D+I + + + L + P+++ S+ Sbjct: 92 QLVNHRHILVNNRIVDVPSYRCKPKDIITARNRPTS-CNALRGESPGGSETPDHLTASLX 150 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N V ++ + V + LVVE+YSR Sbjct: 151 EGNRPTGLVNRIANRESVNLDI--NELLVVEYYSR 183 >gi|212004233|gb|ACJ15425.1| Rps4 [Astrolepis windhamii] Length = 188 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 LGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|51458199|gb|AAU03446.1| ribosomal protein small subunit 4 [Asplenium affine] Length = 190 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q + S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 23 QSTSRRTSQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+ VN V+I SYRCK D I V+ + + L Sbjct: 82 VLFHLGMAXTIPAARQLVNHRHISVNNCIVDIPSYRCKPKDFITVRNRPTS-CNALRXKS 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 LVGGKTPBHLTVSLSEGDRPXGLVNRVANRESINLNINEL---------LVVEYYSR 188 >gi|328541050|gb|AEB21749.1| ribosomal protein S4 [Chloranthelia berggrenii] Length = 199 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + I Sbjct: 117 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGS---I 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 NQTINRESIDLKINELLVVEYYSR 197 >gi|328541044|gb|AEB21746.1| ribosomal protein S4 [Hygrolembidium rigidum] Length = 195 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 3 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 53 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D ++R TI ARQ VNHRH+ + Sbjct: 54 -LTERQSLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPI 112 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + I Sbjct: 113 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGS---I 169 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 170 DQTINRESINLKINELLVVEYYSR 193 >gi|306773484|emb|CBJ55318.1| putative ribosomal protein small subunit 4 [Sphaeropteris megalosora] Length = 148 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E+ + A +++G T + LE RLD I++ + Sbjct: 2 KISQFCVRLEAKQRLRFNYG-LTERXLLRYVRIARKTKGSTGQVPLQLLEMRLDNIIFHS 60 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 TI AARQ VNHRH+LVN R V++ SYRCK D+I V+ Sbjct: 61 GMASTIPAARQLVNHRHILVNDRIVDVPSYRCKPKDIITVE 101 >gi|32401791|gb|AAP80884.1| small ribosomal protein 4 [Picea smithiana] Length = 193 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 27/204 (13%) Query: 17 ENLWGRPKSPVNTRSYGPGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDI 65 E L GRPK+ PGL +R K+ K S + ++ KQK++ +YG + Sbjct: 1 ETLVGRPKT-------LPGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQKLRFHYG-L 52 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A R++G T L+ LE R D I+++ PTI ARQ VNH H+ VN Sbjct: 53 TERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNILFQLGMAPTIPGARQLVNHGHIRVND 112 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS 184 V+I SY CK DVI ++ + + + + L +RD +P +++ H F+ + Sbjct: 113 HMVDIPSYPCKPQDVITIRDQQRLRDIIRKNLDLFQRDKLPNHLTF-HSLQYKGFI---N 168 Query: 185 SLKDVPYPVIMQPN--LVVEFYSR 206 + D + + ++ N LVVE+YSR Sbjct: 169 QIIDSKW-ISLKINELLVVEYYSR 191 >gi|328541046|gb|AEB21747.1| ribosomal protein S4 [Hygrolembidium rigidum] gi|328541048|gb|AEB21748.1| ribosomal protein S4 [Hygrolembidium rigidum] Length = 199 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQSLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + I Sbjct: 117 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGS---I 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 DQTINRESINLKINELLVVEYYSR 197 >gi|320455024|dbj|BAJ65659.1| small ribosomal protein 4 [Metzgeria duricosta] gi|320455030|dbj|BAJ65662.1| small ribosomal protein 4 [Metzgeria senjoana] Length = 188 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 14/162 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A R++ Sbjct: 12 PGLTSKTFKLKSSYIDRSAPNKKISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARRTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRI 182 +K + + + ++E + L + +P ++ + + + R+ Sbjct: 131 TIKNQERYRSIIMERLNSLQKPGIPNHLVFDSTKFIGSVNRM 172 >gi|118175399|gb|ABK76262.1| ribosomal protein S4 [Adiantum aleuticum] Length = 195 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 2/163 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R++G T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTKGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + L + Sbjct: 92 GMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPRDIITIRNRPTS-CNAAKGESLGRDE 150 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++++ + + + + LVVE+YSR Sbjct: 151 VPDHLTLSLSKTGEPTGLVNHMVNRESVNLDINELLVVEYYSR 193 >gi|78102625|gb|ABB21526.1| small ribosomal protein 4 [Plagiochila abietina] Length = 175 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 131 AIGNKQKSRAIV 142 >gi|118175401|gb|ABK76263.1| ribosomal protein S4 [Adiantum pedatum] Length = 195 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 2/163 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R++G T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTKGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + L + Sbjct: 92 GMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPRDIITIRNRPTS-CNAAKGESLGRDE 150 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++++ + + + + LVVE+YSR Sbjct: 151 VPDHLTLSLSKTGEPTGLVNHMVNRESVNLDINELLVVEYYSR 193 >gi|118175403|gb|ABK76264.1| ribosomal protein S4 [Adiantum pedatum] Length = 195 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 2/163 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R++G T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTKGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + + + L + Sbjct: 92 GMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPRDIITIRNRPTS-CNAAKGESLGRDE 150 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++++++ + + + + LVVE+YSR Sbjct: 151 VPDHLTLSLSKTGEPTGLVNHMVNRESVNLDINELLVVEYYSR 193 >gi|118724475|gb|ABL10811.1| ribosomal protein small subunit 4 [Cheilanthes lanosa] Length = 195 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 2/128 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD ++++ Sbjct: 33 KISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+I ++ ++ ++ + + Sbjct: 92 NMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRTTS-SNAAKGESFGRDE 150 Query: 164 VPEYISVN 171 VP++++++ Sbjct: 151 VPDHLTLS 158 >gi|118625993|emb|CAL39318.1| small ribosomal protein 4 [Lophocolea concreta] Length = 202 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPAARQLVNHGHISINNYIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 138 TIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|320455048|dbj|BAJ65671.1| small ribosomal protein 4 [Metzgeria sp. Tsubota s.n.] Length = 187 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 14/158 (8%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTFKSKSSYIDRPASNKKISXYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD I++R VPTI AARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGLLLLQLLEMRLDNIIFRLGMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 +K + + + ++E ++ +P +++ + + + Sbjct: 131 TIKNQKRYRSILMETLNSVQKPGIPNHLAFDSTKFIGS 168 >gi|63101027|gb|AAY33138.1| small ribosomal protein 4 [Leptohymenium tenue] Length = 151 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG I+E++ + + A +++G T L+ +E RLD +++R PTI ARQ Sbjct: 1 KQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLIEMRLDNVIFRLGMAPTIPGARQ 59 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 60 LVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 93 >gi|67036046|gb|AAY62949.1| small ribosomal protein subunit 4 [Homalothecium sericeum] Length = 199 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLXEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|227345133|gb|ACP28119.1| small ribosomal protein 4 [Clasmatocolea ctenophylla] Length = 189 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 6 PGLTNKILKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTK 64 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 65 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 124 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ ++P ++ + + + + + + + LV Sbjct: 125 AIRNKHKSRSIITKNINLFQKLEIPSHLIFDSIKLRGS---VNQMINREWINLKINELLV 181 Query: 201 VEFYSR 206 VE+YSR Sbjct: 182 VEYYSR 187 >gi|212004217|gb|ACJ15417.1| Rps4 [Paragymnopteris marantae] Length = 189 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 27 KISPFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFQL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 V TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 86 GMVSTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KIESFGRDQ 144 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 145 VPDHLTLSISKANEPTGLVNHMANRESVNLDI--NELLVVEYHSR 187 >gi|75858228|gb|ABA28688.1| small ribosomal protein 4 [Brevianthus flavus] Length = 191 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE RLD ++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARRAKGSTGQVLLQLLEMRLDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C GD I ++ K K + + + L ++ Sbjct: 89 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCGPGDSITIRNKQKSQSIITKNINLFQKL 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + + + + + + LVVE+YSR Sbjct: 149 KVPSHLTFDSTQLRGS---VNQMINREWINLKINELLVVEYYSR 189 >gi|37992529|gb|AAR06443.1| small ribosomal protein 4 [Garovaglia powellii var. brevifolia] gi|37992533|gb|AAR06445.1| small ribosomal protein 4 [Garovaglia subelegans] Length = 194 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGGINKDGDFHQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 192 >gi|37992515|gb|AAR06436.1| small ribosomal protein 4 [Euptychium vitiense] Length = 194 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 92 GMAPTISGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKS 151 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 192 >gi|32401761|gb|AAP80869.1| small ribosomal protein 4 [Pseudolarix kaempferi] Length = 190 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 29 KISQYRIRPXEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +RD Sbjct: 88 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRD 147 Query: 164 -VPEYI---SVNHDNMVATFVRIPS-SLKDVPYPVIMQPNLVVEFYSR 206 +P ++ S+ + ++ + + +LK + LVVE+YSR Sbjct: 148 KLPNHLTFHSLQYKGLINQIIDLNGITLK-------INELLVVEYYSR 188 >gi|51458121|gb|AAU03410.1| ribosomal protein small subunit 4 [Asplenium normale] Length = 185 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A R+ G T + LE RLD Sbjct: 18 QSTSRKISQFCVRLEAKQRLRFNYG-LTERQLLRYVRIARRTXGSTGQVPLQLLEMRLDN 76 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + + L Sbjct: 77 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTS-CNALRNKF 135 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 136 IVGDKTPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 183 >gi|118625965|emb|CAL39304.1| small ribosomal protein 4 [Leptoscyphus ovatus] Length = 202 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 28/217 (12%) Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ + KI RR+G L G PKS RS K S + ++L Sbjct: 1 MSRYRGPRVKIIRRLGA-LPGLTSKTLEPKSSYIDRSTS--------NKKVSQYRIRLEE 51 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ Sbjct: 52 KQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQ 110 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ +P +++ + Sbjct: 111 LVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKLKIPSHLTFDPI 170 Query: 174 NMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 + + +I + +LK + LVVE+YSR Sbjct: 171 KLRGSVTQIINREWINLK-------INELLVVEYYSR 200 >gi|194738552|gb|ACF93833.1| small ribosomal protein 4 [Leptoscyphus sp. 2 ND-2008] Length = 177 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N +NI SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDILNIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|66990674|emb|CAI29115.1| small ribosomal protein 4 [Plagiochila colorans] Length = 195 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 15 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ G++I Sbjct: 74 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGNII 133 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 134 TIGNKQKSRSIVT 146 >gi|47606894|gb|AAT36367.1| ribosomal protein subunit 4 [Euptychium cuspidatum] Length = 199 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITEQQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 97 GMAPTISGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGVINKDGDFHQKS 156 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 157 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 197 >gi|49182669|gb|AAT57797.1| small ribosomal protein [Anthelia julacea] Length = 195 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCQPGDII 130 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K QL + + +P ++ + + + ++ + + LV Sbjct: 131 TVKNKQKSQLIIAKNINLFQKLKIPSHLIFDFTELRGV---VNQTINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|37548853|gb|AAO32695.1| ribosomal protein 4 [Pogonatum campylocarpon] Length = 190 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ + K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 7 PGLSGKTLRQKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 65 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 66 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYSCEPGDNI 125 Query: 142 EVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM-VATFVRIPSSLKDVPYPVIMQPNL 199 V+ + K + + + L +P +++ D+M + FV ++ + + L Sbjct: 126 TVRNRQKSQSIITKNINLFPNSKIPSHLTF--DSMKLRGFVN--QTINRELINLKINELL 181 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 182 VVEYYSR 188 >gi|75858226|gb|ABA28687.1| small ribosomal protein 4 [Anthelia julacea] Length = 191 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCQPGDII 126 Query: 142 EVKQKSK-QLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K QL + + +P ++ + + + ++ + + LV Sbjct: 127 TVKNKQKSQLIIAKNINLFQKLKIPSHLIFDFTELRGV---VNQTINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|328541064|gb|AEB21756.1| ribosomal protein S4 [Kurzia trichoclados] Length = 198 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 18/198 (9%) Query: 23 PKSPVNTRSYG-PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKK 69 P+ + R G PGL + K K Y + ++L KQK++ +YG ++E++ Sbjct: 2 PRVKIIRRXGGXPGLXSKTVKQKSGYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQ 60 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N V+ Sbjct: 61 LLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPXARQLVNHRHISINXDIVD 120 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SY C+ D+I +++K K + V + L + +P +++ + + + I ++ Sbjct: 121 IPSYNCEPDDIITIREKQKSQSVVTKNINLFQNLKIPSHLTFDSIKLCGS---INQTINR 177 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 178 ESIDLKINELLVVEYYSR 195 >gi|45271088|gb|AAS56928.1| ribosomal protein small subunit 4 [Asplenium juglandifolium] Length = 186 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +SE + + A ++RG T + LE RLD Sbjct: 23 QSTSRKISQFCVRLEAKQRLRFNYG-LSECQLLRYVRIARKTRGSTGQVPLQLLEMRLDN 81 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN V+I SYRC D+I V+ + + L+ Sbjct: 82 VLFQLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCNPKDIITVRNRPTS-CNALKNRS 140 Query: 159 LAERDVPEYISV 170 P+++SV Sbjct: 141 FVGYKTPDHLSV 152 >gi|118626057|emb|CAL41749.1| small ribosomal protein 4 [Southbya gollanii] Length = 192 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQ+++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKLKSSYIDRSVSNKKVSQYRIRLEEKQRLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQSVNHGHISINNSIVDIPSYDCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 V+ K K + + + L ++ + P +++ + + + + ++ + + LV Sbjct: 127 TVRNKRKSQSVITKNINLFKKLETPSHLTFDSTELRGS---VDQTINREWIDLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|328541062|gb|AEB21755.1| ribosomal protein S4 [Telaranea trilobata] Length = 200 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKQKSGYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRTARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVSLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHIPINYNIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P ++ + + + R ++ + + LV Sbjct: 135 TIRAKPKSQSVITKNINLFQNLKIPSHLIFDSTKLCGSINR---TINRESIDLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|118724501|gb|ABL10824.1| ribosomal protein small subunit 4 [Notholaena affinis] Length = 192 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + + A R+RG T + LE RLD ++++ Sbjct: 30 KISQFCVRLEAKQRLRLNYG-LTERQLLNYVRIARRTRGSTGQVPLQLLEMRLDNVIFQL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN V+I SYR K D+I ++ + + + L + Sbjct: 89 GLASTIPAARQLVSHRHILVNRHIVDIPSYRRKPKDIITIRNRPTSYNAA-KGKSLGRDE 147 Query: 164 VPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P++ +S++ N V ++ + V + LVVE++SR Sbjct: 148 IPDHLTLSISKTNETTGLVNHMANRESVNLDI--NELLVVEYHSR 190 >gi|37992531|gb|AAR06444.1| small ribosomal protein 4 [Dichelodontium nitidum] Length = 194 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGGINKDGDFHQKY 151 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 152 KIPNHLTYIFLEKKGLVNKILDRESIGLK-------INELLVVEYYSR 192 >gi|227345135|gb|ACP28120.1| small ribosomal protein 4 [Clasmatocolea humilis] Length = 191 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGEVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + E +P +++ + + + + + + + LV Sbjct: 127 TIRNKQKSQSIITKNINFFQELKIPSHLTFDSIKLRGS---VNQMINREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|67035935|gb|AAY62894.1| small ribosomal protein subunit 4 [Pseudoleskea andina] Length = 197 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A + +G T L+ LE R D ++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKXKGSTGEVLLQLLEMRXDNXIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 95 GMAXTIPGARQLVNHRHILVNDXIVDIPSYRCKPQDFITIKNQRKSEAIIXKNIEFYQKX 154 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 155 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 195 >gi|41323109|gb|AAR99784.1| small ribosomal protein 4 [Pedinophyllum interruptum] Length = 202 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK S+ + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTNKILKSKSSFIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GDVI Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDVI 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K + + + + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQQSQSIITKNINSFQKLKIPSHLTFDSTQLRGS---VNQMINREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|67035929|gb|AAY62891.1| small ribosomal protein subunit 4 [Entodon hampeanus] Length = 194 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDSIVDIPSYRCKPQDFITIKNQRK 136 >gi|63101065|gb|AAY33157.1| small ribosomal protein 4 [Horikawaea redfearnii] Length = 194 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGELLLQLLEMRLDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 PTI ARQ VNHRH+LVN V+I SY+CK D I +K +KSK + S Sbjct: 92 GMAPTILGARQLVNHRHILVNDCIVDIPSYQCKPQDFITIKNQRKSKTIIS 142 >gi|78102623|gb|ABB21525.1| small ribosomal protein 4 [Chiloscyphus profundus] Length = 176 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 14/149 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVGIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYIS 169 ++ K K + + + L ++ +P +++ Sbjct: 131 TIRNKQKSQSIITKNINLFQKLKIPSHLT 159 >gi|49182692|gb|AAT57808.1| small ribosomal protein [Chiloscyphus appalachianus] Length = 195 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRXDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 131 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 187 Query: 201 VEFYSR 206 VE+YSR Sbjct: 188 VEYYSR 193 >gi|93213402|gb|ABF01127.1| ribosomal protein subunit 4 [Entodon hampeanus] Length = 199 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDSIVDIPSYRCKPQDFITIKNQRK 141 >gi|212004181|gb|ACJ15399.1| Rps4 [Pellaea mucronata] Length = 188 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 21 QSASKKIXQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|118724329|gb|ABL10738.1| ribosomal protein small subunit 4 [Pellaea bridgesii] gi|118724331|gb|ABL10739.1| ribosomal protein small subunit 4 [Pellaea bridgesii] gi|118724333|gb|ABL10740.1| ribosomal protein small subunit 4 [Pellaea bridgesii] gi|118724335|gb|ABL10741.1| ribosomal protein small subunit 4 [Pellaea bridgesii] gi|118724391|gb|ABL10769.1| ribosomal protein small subunit 4 [Pellaea x glaciogena] Length = 195 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|111283698|gb|ABH09199.1| small ribosomal protein 4 [Tylimanthus saccatus] Length = 191 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+ +N V+I SY C GD+I VK + K + +++ L ++ Sbjct: 95 GMASTIPGARQLVNHRHISINNDIVDIPSYNCGPGDIITVKNERKSQSMIIKNINLFQKS 154 Query: 164 -VPEYISVNHDNM 175 +P +++ + + Sbjct: 155 KIPSHLTFDSTEL 167 >gi|48527417|gb|AAT45841.1| small ribosomal protein 4 [Plagiochila sciophila] Length = 202 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTFKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R PTI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHGHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSQSIVT 150 >gi|328541042|gb|AEB21745.1| ribosomal protein S4 [Lembidium nutans] Length = 199 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + I Sbjct: 117 NNNIVDIPSYNCEPGDIITIRDKQKSQSVITKNINLFQNLKIPSHLTFDSIKLSGS---I 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 NQTINRESIDLKINELLVVEYYSR 197 >gi|134274703|emb|CAL30293.1| small ribosomal protein 4 [Lejeunea cavifolia] Length = 160 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFCL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+ +N V+I SY C+ GD+I ++ K K Sbjct: 87 GMAPTIPGARQLVNHRHIFINDDIVDIPSYNCEPGDIITIRNKEK 131 >gi|41323139|gb|AAR99799.1| small ribosomal protein 4 [Plagiochila tabinensis] Length = 202 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLESKSNYMDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ +E RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLIEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K + V + + + +P ++ + + + + + + + LV Sbjct: 138 TIGNKKKSRSIVTKNINSFQKLKIPSHLIFDSTQLRGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|32401779|gb|AAP80878.1| small ribosomal protein 4 [Tsuga canadensis] Length = 188 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 13/182 (7%) Query: 34 PGLHGQRRKS--------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTS 85 PGL +R KS K S + ++ KQK++ YG ++E++ + A ++G T Sbjct: 9 PGLTSKRPKSRNDSINRRKISQYRIRPEEKQKLRFNYG-LTERQLLKYVRIARXTKGSTG 67 Query: 86 HNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 L+ LE R D I++R PTI ARQ VNH H+ VN V+I SY CK DVI ++ Sbjct: 68 QVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVITIRD 127 Query: 146 KSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFY 204 + + A + + L +RD +P++++ N +I S K + + LVVE+Y Sbjct: 128 QQRLRAIIRKNIDLFQRDKLPKHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYY 184 Query: 205 SR 206 SR Sbjct: 185 SR 186 >gi|78102643|gb|ABB21535.1| small ribosomal protein 4 [Plagiochila drepanophylla] Length = 189 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLSSKTLKSKSGYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY+C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYKCEPGDII 130 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 131 TIGNKQKSRAIV 142 >gi|111283694|gb|ABH09197.1| small ribosomal protein 4 [Jackiella curvata] Length = 198 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + L+L KQK++ +YG ++E++ + A +++ Sbjct: 15 PGLTSKTLKPKSSYVDRSTSNKKISQYRLRLEEKQKLRFHYG-LTEQQLLKYVRVARKAK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N VNI SY + GD+I Sbjct: 74 GSTGQILLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVNIPSYNRESGDII 133 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 VK K + + + + L ++ +P +++ + +T +R + K V ++ N Sbjct: 134 TVKNKLRSQSIITKNLNLFQKLKIPSHLTFD-----STKLRGYVNQKINREWVDLKINEL 188 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 189 LVVEYYSR 196 >gi|7576607|gb|AAF63916.1| ribosomal protein system 4 [Pylaisiadelpha tenuirostris] Length = 190 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 89 GMAATIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETMISKNIEFYQKS 148 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V V R LK + LVVE+YSR Sbjct: 149 KIPNHLTYSSLEKKGLVNQIVDRELIGLK-------INELLVVEYYSR 189 >gi|328541094|gb|AEB21771.1| ribosomal protein S4 [Bazzania intermedia] Length = 200 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A + +G T L+ E RLD ++R Sbjct: 39 KVSQYRIRLXXKQKLRFHYG-LTERQLLKYVRIARKXKGSTGQVLLQSXEMRLDNTIFRL 97 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AER 162 PTI ARQ VNH+HV +N V+I SY CK GD+I + K K + + + L Sbjct: 98 GMAPTIPGARQLVNHKHVAINNNIVDIPSYNCKPGDIITXRDKQKSQSIITKNINLFXNL 157 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++ + + + I ++ + + LVVE+YSR Sbjct: 158 KIPSXLTFDSIKLCGS---INQTINREWXNLKINELLVVEYYSR 198 >gi|307683593|dbj|BAJ19775.1| ribosomal protein S4 [Larix decidua] Length = 201 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 40 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK D I ++ + + + + L +RD Sbjct: 99 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDEITIRDQQRLRTIIRKNIDLLQRD 158 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 159 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 199 >gi|294337246|emb|CAQ52772.1| ribosomal protein S4 [Porotrichum fruticosum] Length = 202 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLESS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRK 144 >gi|118724321|gb|ABL10734.1| ribosomal protein small subunit 4 [Pellaea brachyptera] Length = 195 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLXAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ NHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQXGMASTIPAARQLXNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|48527423|gb|AAT45844.1| small ribosomal protein 4 [Plagiochila trabeculata] Length = 202 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKLKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMCIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI SY C+ GD+I Sbjct: 78 GSTGEVLLQLLEMRSDNTIFRLGMSPTIPGARQLVNHRHISINNDMVNIPSYNCESGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + K K + V + + + +P +++ + + + + + + + L Sbjct: 138 TIGNKKKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELLA 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|294337277|emb|CAQ52787.1| ribosomal protein S4 [Thamnobryum subserratum] Length = 202 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 +LVN V+I SYRCK D I +K + K Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRK 144 >gi|6002037|emb|CAA58926.1| ribosomal protein S4 [Coix lacryma-jobi] Length = 196 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 39 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 97 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLA 160 TI ARQ VNHRH+LVN R V+I S+RCK D+I K Q+SK+L AS Sbjct: 98 LGMASTIPGARQLVNHRHILVNDRIVDIPSFRCKPRDIITTKDNQRSKRLVQNYIASSDP 157 Query: 161 ERDVPEYISVN 171 + +P++++V+ Sbjct: 158 GK-LPKHLTVD 167 >gi|194738550|gb|ACF93832.1| small ribosomal protein 4 [Leptoscyphus sp. 1 ND-2008] Length = 177 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSITQIINREWINLK-------INELLVVEYYSR 175 >gi|42794685|gb|AAS45739.1| Rps4 [Satyria meiantha] Length = 211 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVY 101 K K S + ++L+ KQK +YG K +S+ + + +G L+ LE RL I + Sbjct: 40 KKKKSQYHIRLQKKQKXGFHYGLPKRKLLKSV-RFPGKXKGSPGQVLLQLLEMRLXNIXF 98 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------L 154 R TI ARQ VNHRHVLVNGR ++I S RCK D+I ++KS+ L L Sbjct: 99 RLGMASTIPGARQLVNHRHVLVNGRIIDIPSXRCKPRDIITAREKSRALIQNSFQNLFDL 158 Query: 155 EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VP ++++N +I ++ K V + + LVVE+YSR Sbjct: 159 PSRKRKRKRVPYHLTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|313573574|emb|CAT03209.1| ribosomal protein S4 [Touwia laticostata] Length = 196 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 35 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 94 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKDQRK 138 >gi|37992427|gb|AAR06392.1| small ribosomal protein 4 [Neodicladiella pendula] gi|255116234|gb|ACU01169.1| small ribosomal protein subunit 4 [Floribundaria setschwanica] Length = 186 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 25 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRL 83 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 84 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 128 >gi|294337070|emb|CAQ52685.1| ribosomal protein S4 [Anomodon giraldii] Length = 202 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|48527383|gb|AAT45824.1| small ribosomal protein 4 [Plagiochila integerrima] Length = 195 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 4/148 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLGALAGLTSKTLKSKSSY---IDRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD + R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 + +N V+I SY C+ GD+I + K K Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKKK 144 >gi|67035873|gb|AAY62863.1| small ribosomal protein subunit 4 [Clastobryella kusatsuensis] Length = 188 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 86 GMAATIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSETMISKNIEFYQKS 145 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V V R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVNQIVDRELIGLK-------INELLVVEYYSR 186 >gi|328488174|gb|AEB19900.1| small ribosomal protein 4 [Schistochila chlorophylla] gi|328488192|gb|AEB19909.1| small ribosomal protein 4 [Schistochila kirkiana] Length = 191 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N V+I SY C+ GD+I Sbjct: 67 GSTGQLLLQLLEMRLDNTIFRLGMTTTIPGARQLVNHRHILINNDIVDIPSYNCELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + L ++ +P +++ + + + + + + LV Sbjct: 127 AIKNKKKSQSMITRNLNLLQKLKIPNHLTFDSTQLRGL---VNQRIHRESINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|125662696|gb|ABN50298.1| small ribosomal protein 4 [Larix gmelinii var. principis-rupprechtii] Length = 189 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A R++G T L+ LE R D I++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK D I ++ + + + + L +RD Sbjct: 87 GMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDEITIRDQQRLRTIIRKNIDLLQRD 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I S K + + LVVE+YSR Sbjct: 147 KLPNHLTFNSLQYKGFINQIIDS-KWISLKI--NELLVVEYYSR 187 >gi|227345123|gb|ACP28114.1| small ribosomal protein 4 [Chiloscyphus leucophyllus] Length = 191 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQLLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L ++ +P +++ + + + +I + +LK + Sbjct: 127 TIRDKHKSQSMITKNINLFQKLKIPSHLTFDSIKLQGSVNQIINREWINLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|67035988|gb|AAY62920.1| small ribosomal protein subunit 4 [Neodicladiella pendula] Length = 199 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 97 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 141 >gi|12330490|gb|AAG52782.1| ribosomal protein 4 [Nyholmiella obtusifolia] Length = 189 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKF 105 S++ ++L KQK + +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 30 SHYRIRLEEKQKXRFHYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGM 88 Query: 106 VPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VN RH++ B R V+I SYRCK D I +K + K Sbjct: 89 APTIPGARQXVNXRHIIXBHRIVDIPSYRCKPXDFITIKNRQK 131 >gi|52788821|gb|AAU87383.1| ribosomal protein small subunit 4 [Todea barbara] Length = 188 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 81/136 (59%), Gaps = 6/136 (4%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S + ++L AKQ+++ YG +E++ + A +++G T L+ LE RLD Sbjct: 19 QSASKKISQYCIRLEAKQRLRFNYGS-TERQLLRYVRIARKAKGSTGQVLLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK---QLASVLE 155 IV PTI AARQ VNHRH+LVN V+I SYRCK D+ + ++ ++ +E Sbjct: 78 IVPELGMAPTIPAARQSVNHRHILVNDHIVDIPSYRCKPRDITTARDRTSSYDRITKEIE 137 Query: 156 ASQLAERDVPEYISVN 171 +SQ E+ +P++++++ Sbjct: 138 SSQ-GEK-IPDHLTLS 151 >gi|328541028|gb|AEB21738.1| ribosomal protein S4 [Zoopsis ceratophylla] Length = 199 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 16 PGLTSKTLKQKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVHVARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+L+N VNI SY C+ GD++ Sbjct: 75 GSTGQLLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHILINDDIVNIPSYNCEPGDIL 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L + +P +++ + + + +I + +LK + Sbjct: 135 AIRDKQKSQSIITKNINLFQNLKMPSHLTFDSTKLCGSINQIINREWINLK-------IN 187 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 188 ELLVVEYYSR 197 >gi|118724389|gb|ABL10768.1| ribosomal protein small subunit 4 [Pellaea x glaciogena] Length = 192 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 25 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 84 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 142 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 190 >gi|67035961|gb|AAY62907.1| small ribosomal protein subunit 4 [Thamnobryum ellipticum] Length = 188 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKDQRK 130 >gi|212004159|gb|ACJ15388.1| Rps4 [Pellaea brachyptera] Length = 186 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 7/172 (4%) Query: 38 GQRRKSKPSY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 G + SK + F ++L AKQ+++ YG ++E++ + A ++RG T + LE RL Sbjct: 17 GDQSASKKIFQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRL 75 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 76 DNVIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KV 134 Query: 157 SQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 135 ESFGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 184 >gi|311901206|gb|ADQ13153.1| small ribosomal protein 4 [Nephrolepis rivularis] Length = 177 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 15 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVLFHL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + Sbjct: 74 GMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPRDIITVRNR 116 >gi|118724509|gb|ABL10828.1| ribosomal protein small subunit 4 [Bommeria hispida] Length = 195 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRHVLVN R V+I SYR K D+I ++ + + + Sbjct: 87 VIFQLGMASTIPAARQLVSHRHVLVNRRIVDIPSYRRKPNDIITIRNRPTSYNAA-KGES 145 Query: 159 LAERDVPEYISVN 171 L +VP++++++ Sbjct: 146 LGRDEVPDHLTLS 158 >gi|328541154|gb|AEB21801.1| ribosomal protein S4 [Lepidozia microphylla] Length = 198 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 22 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I SY C+ D+I Sbjct: 73 GSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNIVDIPSYNCEPRDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + + L + +P +++ + + + I ++ + + LV Sbjct: 133 TIRDRQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGS---INQTINREWINLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|118627502|emb|CAL39385.1| small ribosomal protein 4 [Douinia ovata] Length = 202 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ VN +V+I SY + GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHISVNNDTVDIPSYNREPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 + + K + + + L ++ +P +++ + + + + ++ + + LV Sbjct: 138 TIGNRRKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGS---VNQTVNREWVNLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|212004207|gb|ACJ15412.1| Rps4 [Pellaea wrightiana] Length = 185 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 7/172 (4%) Query: 38 GQRRKSKPSY-FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRL 96 G + SK + F ++L AKQ+++ YG ++E++ + A ++RG T + LE RL Sbjct: 16 GDQSASKKIFQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRL 74 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA 156 D ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 75 DNVIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KV 133 Query: 157 SQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 134 ESFGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 183 >gi|37992505|gb|AAR06431.1| small ribosomal protein 4 [Duthiella flaccida] Length = 188 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 86 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 130 >gi|37992519|gb|AAR06438.1| small ribosomal protein 4 [Floribundaria floribunda] Length = 187 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 26 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRL 84 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 85 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 129 >gi|227345137|gb|ACP28121.1| small ribosomal protein 4 [Clasmatocolea obvoluta] Length = 191 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG +SE++ + A +++G T L+ LE R D ++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-MSERQLLKSMRIARKAKGSTGQVLLQLLEMRPDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQFVNHRH+ +N V+I SY C+ GD+I V+ K K + + + L ++ Sbjct: 89 GMSSTIPGARQFVNHRHISINNDIVDIPSYNCEPGDIITVRNKHKSQSIITKNINLFQKL 148 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ + + + + + D + + + LVVE+YSR Sbjct: 149 KIPSHLTFDSIKLRGSV----NQMIDREWINLKINELLVVEYYSR 189 >gi|67035992|gb|AAY62922.1| small ribosomal protein subunit 4 [Duthiella wallichii] Length = 194 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLPNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 136 >gi|16930584|gb|AAL31960.1| ribosomal protein small subunit 4 [Thelypteris palustris] Length = 156 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 6/158 (3%) Query: 51 QLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIF 110 +L AKQ+++ YG ++E++ + ++RG T + LE RLD +++R TI Sbjct: 1 RLEAKQRLRFNYG-LTERQLLKYVRIXRKTRGSTGQVPLQLLEMRLDNVIFRLGMASTIP 59 Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISV 170 A RQ VNHRH+LVN R V+I SYRCK D+I V+ + ++ S ++ P++++V Sbjct: 60 AXRQLVNHRHILVNNRIVDIPSYRCKPKDIITVRNRPTSYNALRGESPGGDK-TPDHLTV 118 Query: 171 N--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + N V ++ + V + LVVE+YSR Sbjct: 119 SLLEGNRPTGLVNRVANRESVNLNI--NELLVVEYYSR 154 >gi|118724365|gb|ABL10756.1| ribosomal protein small subunit 4 [Pellaea sp. UC1788706] gi|118724375|gb|ABL10761.1| ribosomal protein small subunit 4 [Pellaea ternifolia] gi|118724377|gb|ABL10762.1| ribosomal protein small subunit 4 [Pellaea ternifolia] gi|118724379|gb|ABL10763.1| ribosomal protein small subunit 4 [Pellaea ternifolia] Length = 195 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|194738530|gb|ACF93822.1| small ribosomal protein 4 [Leptoscyphus hexagonus] Length = 177 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDLVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|212004193|gb|ACJ15405.1| Rps4 [Pellaea ternifolia] Length = 186 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 19 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 78 VIFQLGMTSTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 136 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 137 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 184 >gi|118724381|gb|ABL10764.1| ribosomal protein small subunit 4 [Pellaea ternifolia] Length = 188 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|548864|sp|P36454|RR4_DENGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|439934|emb|CAA82434.1| ribosomal protein S4 [Dendrocalamus giganteus] gi|6002057|emb|CAA58935.1| ribosomal protein S4 [Gigantochloa verticillata] Length = 196 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVN 171 +LVN R V+I S+RCK D+I K Q + L + +A D +P++++++ Sbjct: 116 ILVNRRIVDIPSFRCKPRDIITT--KDNQRSKCLVQNSIASSDPGKLPKHLTID 167 >gi|7576535|gb|AAF63880.1| ribosomal protein system 4 [Garovaglia elegans] Length = 190 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD I++R Sbjct: 30 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVSLQLPEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNE 131 >gi|63191667|gb|AAY34795.1| small ribosomal protein subunit 4 [Noguchiodendron sphaerocarpum] Length = 190 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+LVN V+I SYRCK D+I +K + K Sbjct: 88 GMAHTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDLITIKDQRK 132 >gi|42556492|gb|AAS19841.1| small ribosomal protein 4 [Ptychanthus striatus] Length = 188 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 27 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGQLLLQLLEMRLDNTIFCL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI +ARQ VNHRH+ +N VNI SY CK GD+I +K K K + + + L+++ Sbjct: 86 GMATTIPSARQLVNHRHIFINDYIVNIPSYNCKPGDIITIKNKEKSQSIISKNINLSQKL 145 Query: 163 DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P NH +T +R + +++ + + LVVE+YSR Sbjct: 146 QIP-----NHLTFDSTQLRGLVNQTIRREWIDLKINELLVVEYYSR 186 >gi|32401892|gb|AAP80934.1| small ribosomal protein 4 [Thujopsis dolabrata] Length = 195 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 1/102 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 KPS + +L+ KQ+++ +YG + ++ + A R++G T + LE RLD I++R Sbjct: 30 KPSKYPXRLKEKQRLRFHYG-LPXRQLLQYVRIARRAKGSTGQVXLQLLEMRLDNILFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ VNHRH+LV GR VNI SYR K D+I +K+ Sbjct: 89 GMALTIPEARQLVNHRHILVXGRIVNIPSYRXKPQDLISIKE 130 >gi|194738548|gb|ACF93831.1| small ribosomal protein 4 [Leptoscyphus sp. 3 ND-2008] Length = 177 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|59803313|gb|AAX07765.1| Rps4 [Pellia endiviifolia] Length = 197 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K + SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 14 PGLTSKTLKLESSYINQSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKTK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+++N +V+I SY C+ DVI Sbjct: 73 GSTGEVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHGHIVINDYTVDIPSYNCEPRDVI 132 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K ++K + + + ++ +P +++ + + + ++ + + LV Sbjct: 133 TIKNRNKSQSLITKNMDSFRKQKIPNHLTFDFTKFRGS---VNKTIDRECIDLKINELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|125662698|gb|ABN50299.1| small ribosomal protein 4 [Metasequoia glyptostroboides] Length = 207 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 94/170 (55%), Gaps = 21/170 (12%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 46 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 104 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---V 164 ++ ARQ +NHRH+ VN R V+I SYRCK D+I +K K + + + + ++D V Sbjct: 105 SMPEARQLINHRHIRVNDRIVDIPSYRCKPQDLISIKDKQRLRNIINKNIDIFQKDKMRV 164 Query: 165 PEYISV-----NHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++++ + +V + RI + ++ LVVE+YSR Sbjct: 165 PPHLNLIKKKSQYSGLVKKIIDNNRIGLKINEL---------LVVEYYSR 205 >gi|194738510|gb|ACF93812.1| small ribosomal protein 4 [Leptoscyphus azoricus] gi|194738512|gb|ACF93813.1| small ribosomal protein 4 [Leptoscyphus azoricus] gi|194738514|gb|ACF93814.1| small ribosomal protein 4 [Leptoscyphus azoricus] gi|194738516|gb|ACF93815.1| small ribosomal protein 4 [Leptoscyphus azoricus] gi|194738538|gb|ACF93826.1| small ribosomal protein 4 [Leptoscyphus jackii] gi|194738540|gb|ACF93827.1| small ribosomal protein 4 [Leptoscyphus jackii] gi|194738542|gb|ACF93828.1| small ribosomal protein 4 [Leptoscyphus physocalyx] gi|194738546|gb|ACF93830.1| small ribosomal protein 4 [Leptoscyphus porphyrius] Length = 177 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|32401771|gb|AAP80874.1| small ribosomal protein 4 [Cathaya argyrophylla] Length = 189 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I+++ Sbjct: 28 KISQYRIRSEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFQL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +R+ Sbjct: 87 GMAPTIPGARQLVNHGHIQVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRN 146 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ H F+ + + D + + + LVVE+YSR Sbjct: 147 KLPNHLTF-HSLQCKGFI---NQIIDSKWISLKINELLVVEYYSR 187 >gi|7576519|gb|AAF63872.1| ribosomal protein system 4 [Thamnobryum allegrense] gi|7576521|gb|AAF63873.1| ribosomal protein system 4 [Neckeropsis disticha] Length = 190 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 30 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 89 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 133 >gi|111283700|gb|ABH09200.1| small ribosomal protein 4 [Lejeunea cavifolia] Length = 188 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++ Sbjct: 33 KISQYRIRLEEKQKLRFHYG-VTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFCL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 TI ARQ VNHRH+ +N VNI SY CK GD+I +K K K Sbjct: 92 GMATTIPNARQLVNHRHISINDYIVNIPSYNCKPGDIITIKNKEK 136 >gi|328541080|gb|AEB21764.1| ribosomal protein S4 [Chiloscyphus semiteres] Length = 200 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 17 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 76 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHGHISINNDIVDIPSYNCEPGDII 135 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 136 TIRNKQKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 192 Query: 201 VEFYSR 206 VE+YSR Sbjct: 193 VEYYSR 198 >gi|12330548|gb|AAG52811.1| ribosomal protein 4 [Brachelyma subulatum] Length = 189 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 28 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + + + ++ Sbjct: 87 GMALTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYKKY 146 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YIS+ +V + R LK + LVVE+YSR Sbjct: 147 KIPNHLTYISLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 187 >gi|212004171|gb|ACJ15394.1| Rps4 [Pellaea bridgesii] Length = 187 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F + L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 20 QSASKKISQFCVSLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|311223018|gb|ADP76591.1| small ribosomal protein 4 [Pellia neesiana] Length = 189 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILSQTLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+L+N +V+I SY C+ DVI V + Sbjct: 89 GMSPTIPGARQLVNHRHILINDNTVDIPSYNCEPKDVITVNNR 131 >gi|227345131|gb|ACP28118.1| small ribosomal protein 4 [Chiloscyphus sp. XHN-2009] Length = 191 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRPDNTIFRLGMSSTIPGARQLVNHRHISINNNIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP----YPVIMQ 196 ++ K K + + + L ++ +P +++ + +++ S+ + + + Sbjct: 127 TIRNKHKSQSIITKNINLFQKLKIPSHLTFD-------LIKLRGSVNQMINREWINLKIN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|290467479|gb|ADD25857.1| small ribosomal protein 4 [Hymenophyllum plicatum] Length = 186 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 10/173 (5%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +E+ + A +++G T L+ LE RLD Sbjct: 17 QSSSKKVSQFCVRLEAKQRLRFNYGS-TERPLLKYVRVARKTKGSTGQVLLPLLEMRLDN 75 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV---LE 155 IV++ TI AARQ VNHR +LVN V+I SYRCK D+I ++ +S + +E Sbjct: 76 IVFQLGMSTTIPAARQLVNHRPILVNNNIVDIPSYRCKPKDLITLRNRSSSYSGSNKNIE 135 Query: 156 ASQLAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S++ + +P+++ S + N+ V ++ + + + LVVE+YSR Sbjct: 136 FSRI--KKIPDHLTFSFSEGNIPKGLVNGIANRESINLNI--NELLVVEYYSR 184 >gi|141446682|gb|ABO87548.1| ribosomal protein S4 [Elymus repens] gi|141446684|gb|ABO87549.1| ribosomal protein S4 [Elymus repens] gi|141446686|gb|ABO87550.1| ribosomal protein S4 [Elymus repens] gi|141446688|gb|ABO87551.1| ribosomal protein S4 [Elymus repens] gi|141446690|gb|ABO87552.1| ribosomal protein S4 [Elymus repens] gi|141446692|gb|ABO87553.1| ribosomal protein S4 [Elymus repens] gi|141446694|gb|ABO87554.1| ribosomal protein S4 [Elymus repens] gi|141446696|gb|ABO87555.1| ribosomal protein S4 [Elymus repens] gi|141446698|gb|ABO87556.1| ribosomal protein S4 [Taeniatherum caput-medusae] gi|141446700|gb|ABO87557.1| ribosomal protein S4 [Elymus semicostatus] gi|141446702|gb|ABO87558.1| ribosomal protein S4 [Hordeum bogdanii] gi|141446704|gb|ABO87559.1| ribosomal protein S4 [Elymus sibiricus] gi|141446706|gb|ABO87560.1| ribosomal protein S4 [Elymus transhyrcanus] gi|141446708|gb|ABO87561.1| ribosomal protein S4 [Elymus alaskanus] gi|141446710|gb|ABO87562.1| ribosomal protein S4 [Elymus mutabilis] gi|141446712|gb|ABO87563.1| ribosomal protein S4 [Elymus fibrosus] gi|141446714|gb|ABO87564.1| ribosomal protein S4 [Elymus transbaicalensis] gi|141446716|gb|ABO87565.1| ribosomal protein S4 [Elymus repens] gi|141446718|gb|ABO87566.1| ribosomal protein S4 [Thinopyrum intermedium] gi|141446720|gb|ABO87567.1| ribosomal protein S4 [Pseudoroegneria spicata] gi|141446722|gb|ABO87568.1| ribosomal protein S4 [Thinopyrum junceum] gi|141446724|gb|ABO87569.1| ribosomal protein S4 [Thinopyrum intermedium] gi|141446726|gb|ABO87570.1| ribosomal protein S4 [Hordeum stenostachys] gi|141446728|gb|ABO87571.1| ribosomal protein S4 [Elymus repens] gi|141446730|gb|ABO87572.1| ribosomal protein S4 [Elymus repens] gi|141446732|gb|ABO87573.1| ribosomal protein S4 [Elymus repens] gi|141446734|gb|ABO87574.1| ribosomal protein S4 [Elymus repens] gi|141446736|gb|ABO87575.1| ribosomal protein S4 [Elymus repens] gi|141446738|gb|ABO87576.1| ribosomal protein S4 [Elymus repens] gi|141446740|gb|ABO87577.1| ribosomal protein S4 [Elymus repens] gi|141446742|gb|ABO87578.1| ribosomal protein S4 [Elymus repens] gi|141446745|gb|ABO87579.1| ribosomal protein S4 [Hordeum vulgare] gi|141446749|gb|ABO87581.1| ribosomal protein S4 [Elymus repens] gi|141446751|gb|ABO87582.1| ribosomal protein S4 [Elymus repens] gi|141446753|gb|ABO87583.1| ribosomal protein S4 [Elymus repens] Length = 99 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 1/99 (1%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 2 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 60 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 TI ARQ VNHRH+LVNGR VNI S+RCK D+I Sbjct: 61 LGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDII 99 >gi|118724435|gb|ABL10791.1| ribosomal protein small subunit 4 [Astrolepis cochisensis] Length = 195 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|80974148|gb|ABB53767.1| small ribosomal subunit protein 4 [Garovaglia baeuerlenii] Length = 176 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD I++R Sbjct: 15 KISQYRVRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVSLQLPEMRLDNIIFRL 73 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + + + ++ Sbjct: 74 GMAPTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIVKNEKNSEGIINKDGDFHQKY 133 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P YI + +V + R LK + LVVE+YSR Sbjct: 134 KIPNHLTYIFLEKKGLVNKLLDRESIGLK-------INELLVVEYYSR 174 >gi|67035875|gb|AAY62864.1| small ribosomal protein subunit 4 [Brotherella recurvans] Length = 192 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L E RLD +++R Sbjct: 31 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLSQLPEMRLDNVIFRL 89 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 90 GMAATIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRKSETMISKNIEFYQKY 149 Query: 163 DVPEYISVN---HDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N + +V V R LK + LVVE+YSR Sbjct: 150 KIPNHLTYNSLENKGLVNQIVDRELIGLK-------INELLVVEYYSR 190 >gi|50235356|gb|AAT70711.1| Rps4 [Brachythecium bolanderi] Length = 195 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 137 >gi|329118620|ref|ZP_08247324.1| 30S ribosomal protein S4 [Neisseria bacilliformis ATCC BAA-1200] gi|327465355|gb|EGF11636.1| 30S ribosomal protein S4 [Neisseria bacilliformis ATCC BAA-1200] Length = 118 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 8/122 (6%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 L+ LESRLD ++YR F T ARQ V+H+ V VNG+ VNI SY+ K GDV+ V++K+ Sbjct: 2 LLQLLESRLDNVIYRMGFGSTRAEARQLVSHKAVTVNGQVVNIPSYQVKAGDVVAVREKA 61 Query: 148 KQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP--SSLKDVPYPVIMQPNLVVEFY 204 K+ + EA LA + P ++SV+ M F +P S L + LVVEFY Sbjct: 62 KKQVRIQEALGLAAQIGFPGWVSVDTAKMEGIFKNMPDRSELSG-----DINEQLVVEFY 116 Query: 205 SR 206 S+ Sbjct: 117 SK 118 >gi|212004185|gb|ACJ15401.1| Rps4 [Pellaea ovata] Length = 195 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 28 QSASKKISQFCVRLEAKQRLRLNYG-MTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 86 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 87 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 145 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 146 FGKDQVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 193 >gi|212004237|gb|ACJ15427.1| Rps4 [Cheilanthes feei] Length = 183 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K F ++L AKQ+++ YG ++E++ + A R+RG T + LE RLD Sbjct: 16 QSASKKIXQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARRTRGSTGQVPLQLLEMRLDN 74 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ ++ +V + Sbjct: 75 VIFQLNMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRTTSYNAV-KGES 133 Query: 159 LAERDVPEYISVN 171 +VP++++++ Sbjct: 134 FGRDEVPDHLTLS 146 >gi|212004229|gb|ACJ15423.1| Rps4 [Astrolepis cochisensis subsp. cochisensis] Length = 188 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|212004189|gb|ACJ15403.1| Rps4 [Pellaea sagittata] Length = 178 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 11 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 69 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 70 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 128 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 129 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 176 >gi|49182776|gb|AAT57850.1| small ribosomal protein [Petalophyllum ralfsii] Length = 195 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD I++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAREAKGSTGRVLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH H+ ++G +V+I SY K GDVI +K + + + + +++ Sbjct: 93 GMAPTIPGARQLVNHGHIAIDGNTVDIPSYNRKPGDVITIKNRRESQSIITRNMSSSQKP 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++++ A F + D + + + LVVE+YSR Sbjct: 153 KIPNHLTLDS----AQFRGSVDQVIDRDWMNLKINELLVVEYYSR 193 >gi|46811038|gb|AAT01837.1| small ribosomal protein 4 [Petalophyllum ralfsii] Length = 197 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD I++R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIAREAKGSTGRVLLQLLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNH H+ ++G +V+I SY K GDVI +K + + + + +++ Sbjct: 95 GMAPTIPGARQLVNHGHIAIDGNTVDIPSYNRKPGDVITIKNRRESQSIITRNMSSSQKP 154 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++++ A F + D + + + LVVE+YSR Sbjct: 155 KIPNHLTLDS----AQFRGSVDQVIDRDWMNLKINELLVVEYYSR 195 >gi|328541038|gb|AEB21743.1| ribosomal protein S4 [Megalembidium insulanum] Length = 197 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 5 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 55 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D + R TI ARQ VNHRH+ + Sbjct: 56 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPI 114 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + L + +P +++ + + + I Sbjct: 115 NNNIVDIPSYNCEPGDIITIREKQKSQSVITRNINLFQNLKIPSHLTFDSIKLCGS---I 171 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 172 NQTINREWIDLKINELLVVEYYSR 195 >gi|118724433|gb|ABL10790.1| ribosomal protein small subunit 4 [Astrolepis cochisensis] Length = 192 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 25 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 83 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 84 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 142 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 143 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 190 >gi|78102653|gb|ABB21540.1| small ribosomal protein 4 [Plagiochila sciophila subsp. echinata] Length = 189 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + +L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTSKTFKSKSSYIDRSTPNKKVSQYRXRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R PTI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHGHISINNDIVDIPSYNCEPGDII 130 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 131 TIGNKQKSQSIVT 143 >gi|63101013|gb|AAY33131.1| small ribosomal protein 4 [Rhytidiopsis robusta] Length = 170 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 9 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 67 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 68 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRK 112 >gi|45271066|gb|AAS56921.1| ribosomal protein small subunit 4 [Acrostichum danaeifolium] Length = 197 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 21/190 (11%) Query: 34 PGLHGQRRKS---------------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 PGL G+ + S K S F ++L AKQ+++ YG ++E++ + A Sbjct: 10 PGLAGKNKTSNLGEFKVASDQSASKKISQFCIRLEAKQRLRFNYG-LTERQLLKYVRIAR 68 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 ++RG T L+ LE RLD ++++ TI AARQ VNHRH+LVN R +I SYR K Sbjct: 69 KTRGSTGQVLLQLLEMRLDNVIFQLGMASTIPAARQLVNHRHILVNRRIXDIPSYRRKPT 128 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQ 196 D+I ++ + + S +P++++++ A V ++ + V + Sbjct: 129 DMITIRNRPTSYNAXKRES-FGGHKIPDHLTLSLLETGESAGLVNHMANRESVDLN--LN 185 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 186 ELLVVEYYSR 195 >gi|118724371|gb|ABL10759.1| ribosomal protein small subunit 4 [Pellaea ovata] Length = 188 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F + L AKQ+++ YG ++E++ + + A ++RG T + LE RLD Sbjct: 21 QSASKKISQFCVGLEAKQRLRLNYG-LTERQLLNYIRIARKTRGSTGQVPLQLLEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 FGKDQVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|110456685|gb|ABG74794.1| ribosomal protein S4 [Jasminum abyssinicum] Length = 203 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 101/179 (56%), Gaps = 13/179 (7%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L + R K S + ++L KQK+ +YG + + + + A +++G T L+ L Sbjct: 29 GSDLRKKPRSRKKSQYRIRLEEKQKLCFHYG-LRDYQLLKYVRIAAKAKGPTGQVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQL 150 E RLD I++R TI AARQ V+ RH+LVNGR V+ SYRCK D+I K QKS+ L Sbjct: 88 EMRLDNILFRLGMASTIPAARQLVHRRHILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTL 147 Query: 151 -ASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 + L++S +++P ++++ H V + + D + V ++ N LVVE+YSR Sbjct: 148 IQNSLDSS--PHKELPNHLTL-HPFQYKGLV---NQIIDSKW-VGLKINELLVVEYYSR 199 >gi|309322363|ref|YP_003934443.1| ribosomal protein S4 [Cathaya argyrophylla] gi|307683289|dbj|BAJ19596.1| ribosomal protein S4 [Cathaya argyrophylla] Length = 203 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I+++ Sbjct: 40 KISQYRIRSEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFQL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +R+ Sbjct: 99 GMAPTIPGARQLVNHGHIQVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRN 158 Query: 164 ---VPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ H F+ + + D + + + LVVE+YSR Sbjct: 159 RDKLPNHLTF-HSLQCKGFI---NQIIDSKWISLKINELLVVEYYSR 201 >gi|118724347|gb|ABL10747.1| ribosomal protein small subunit 4 [Pellaea intermedia] Length = 182 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 15 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 73 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 74 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 132 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 133 FGKDQVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 180 >gi|51458078|gb|AAU03392.1| ribosomal protein small subunit 4 [Asplenium auritum] Length = 193 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG +SE++ + A ++RG T + LE RLD Sbjct: 30 QSTSRKISQFCVRLEAKQRLRFNYG-LSERQLLRYVRIARKTRGSTGQVSLQLLEMRLDN 88 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN +I SYRC D+I V+ + + L+ Sbjct: 89 VLFQLGMASTIPAARQLVNHRHILVNNWIADIPSYRCNPKDIITVRNRPTS-CNALKNRS 147 Query: 159 LAERDVPEYISV 170 P++++V Sbjct: 148 FVGYKTPDHLTV 159 >gi|67035887|gb|AAY62870.1| small ribosomal protein subunit 4 [Fauriella tenuis] Length = 188 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E RLD +++R Sbjct: 27 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRL 85 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 T+ ARQ VNHRH+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 86 GMASTVPGARQLVNHRHILVNDCIVDIPSYRCKPQDFISIKNQRKSETIISKNIEFYQKY 145 Query: 163 DVPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V V R LK + LVVE+YSR Sbjct: 146 KIPNHLTYSSLEKKGLVNQIVDRESIGLK-------INELLVVEYYSR 186 >gi|125662690|gb|ABN50295.1| small ribosomal protein 4 [Cathaya argyrophylla] Length = 198 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++ KQK++ +YG ++E++ + A R++G T L+ LE RLD I+++ Sbjct: 35 KISQYRIRSEEKQKLRFHYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFQL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+ VN V+I SY CK DVI ++ + + A + + L +R+ Sbjct: 94 GMAPTIPGARQLVNHGHIQVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRN 153 Query: 164 ---VPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 +P +++ H F+ + + D + + + LVVE+YSR Sbjct: 154 RDKLPNHLTF-HSLQCKGFI---NQIIDSKWISLKINELLVVEYYSR 196 >gi|212004191|gb|ACJ15404.1| Rps4 [Pellaea ternifolia] Length = 187 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 20 QSASKKISPFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 79 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|118626061|emb|CAL41751.1| small ribosomal protein 4 [Pachyschistochila carnosa] Length = 191 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 19/187 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKPKSSYIDRSTANKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE RLD ++R TI ARQ VNHRH+L+N V+I SY + GD+I Sbjct: 67 GSTGQVSLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDIVDIPSYNRELGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF-VRIPSSLKDVPYPVIMQPNL 199 +K K K + + L ++ +P +++ + + RI D+ + L Sbjct: 127 AIKNKKKSQSVITRNLNLLQKLKIPNHLTFDSTQLRGLVNQRIHRESIDLK----INELL 182 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 183 VVEYYSR 189 >gi|89147830|gb|ABD62763.1| ribosomal protein 4 [Lophocolea heterophylla] Length = 200 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 17 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 75 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD+I Sbjct: 76 GSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHGHISINNYIVDIPSYNCEPGDII 135 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 136 TIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 192 Query: 201 VEFYSR 206 VE+YSR Sbjct: 193 VEYYSR 198 >gi|75858220|gb|ABA28684.1| small ribosomal protein 4 [Acrobolbus ciliatus] Length = 191 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R D ++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRSDNTIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+ +N V+I SY C GD+I VK + K + +++ L ++ Sbjct: 89 GMASTIPGARQLVNHRHISINNDIVDIPSYNCGPGDIITVKNERKSQSMIIKNINLFQKS 148 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + FV ++ + + LVVE+YSR Sbjct: 149 KMPSHLTFDSTELRG-FVN--QTINREWIDLKINELLVVEYYSR 189 >gi|227345117|gb|ACP28111.1| small ribosomal protein 4 [Chiloscyphus austrigenus] Length = 191 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRPDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP----YPVIMQ 196 ++ K K + + + L ++ +P +++ + +++ S+ + + + Sbjct: 127 TIRNKHKSQSIITKNINLFQKLKIPSHLTFD-------LIKLRGSVNQMINREWINLKIN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|111283706|gb|ABH09203.1| small ribosomal protein 4 [Neogrollea notabilis] Length = 170 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 15/167 (8%) Query: 11 IDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 I RR+G N +PKS N RS K S + ++L KQK++ +YG + Sbjct: 1 IIRRLGALPGLTNKTLKPKSGYNDRSTS--------NRKVSQYRIRLEEKQKLRFHYG-L 51 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 52 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHITIND 111 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVN 171 V+I SY C+ GD I ++ K K + + + L + +P +++ + Sbjct: 112 NIVDIPSYNCQPGDFIIIRDKQKSQSIITKNFNLFQNSKIPSHLTFD 158 >gi|46810998|gb|AAT01817.1| small ribosomal protein 4 [Pellia sp. LLF-2004] Length = 195 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 1/107 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILSQTLEMRLDNIIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 PTI ARQ VNHRH+L+N +V+I SY C+ DVI V + + + Sbjct: 95 GMSPTIPGARQLVNHRHILINDDTVDIPSYNCEPKDVITVNNRKESV 141 >gi|49182756|gb|AAT57840.1| small ribosomal protein [Marsupidium latifolium] Length = 195 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R D ++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRSDNTIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+ +N V+I SY C GD+I VK + K + +++ L ++ Sbjct: 93 GMASTIPGARQLVNHRHISINNDIVDIPSYNCGPGDIITVKNERKSQSMIIKNINLFQKS 152 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + FV ++ + + LVVE+YSR Sbjct: 153 KMPSHLTFDSTELRG-FVN--QTINREWIDLKINELLVVEYYSR 193 >gi|212004173|gb|ACJ15395.1| Rps4 [Pellaea intermedia] Length = 179 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 12 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 70 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 71 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 129 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 130 FGKDQVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 177 >gi|227345121|gb|ACP28113.1| small ribosomal protein 4 [Chiloscyphus lentus] Length = 191 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKQKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 67 GSTGQVLLQLLEMRPDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWINLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|212004227|gb|ACJ15422.1| Rps4 [Astrolepis cochisensis] gi|212004231|gb|ACJ15424.1| Rps4 [Astrolepis integerrima] Length = 180 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 13 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 71 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 72 VIFQLGIASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 130 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 131 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 178 >gi|194738528|gb|ACF93821.1| small ribosomal protein 4 [Leptoscyphus gibbosus] gi|194738558|gb|ACF93836.1| small ribosomal protein 4 [Leptoscyphus gibbosus] Length = 177 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNTQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|118724405|gb|ABL10776.1| ribosomal protein small subunit 4 [Paragymnopteris vestita] Length = 180 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 13 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 71 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR D+I ++ + +V + Sbjct: 72 VIFQLGMASTIPAARQLVSHRHILVNCRIVDIPSYRRNPKDIITIRNRPTSYNAV-KVES 130 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 131 FGKDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 178 >gi|212004197|gb|ACJ15407.1| Rps4 [Pellaea truncata] Length = 186 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 19 QSASKKISQXCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ VNHRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 78 VIFQLGMASTIPAARQLVNHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 136 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 137 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 184 >gi|67035933|gb|AAY62893.1| small ribosomal protein subunit 4 [Erythrodontium longisetum] Length = 197 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 36 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNH+H+LVN V+I SYRCK D I +K + K Sbjct: 95 GMAPTIPGARQLVNHKHILVNDSIVDIPSYRCKPQDFITIKNQRK 139 >gi|46811044|gb|AAT01840.1| small ribosomal protein 4 [Porella navicularis] Length = 197 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PG + K K SY + ++L KQK++ +YG ++E++ + A ++ Sbjct: 14 PGFTAKTLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRTARNAK 72 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ TI ARQ VNH+H+ +N +V+I SY C+ GD+I Sbjct: 73 GSTGQILLQLLEMRLDNTIFCLGMASTIPGARQLVNHKHISINNDTVDIPSYNCEPGDII 132 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + L ++ ++P +++ + + + + + + + LV Sbjct: 133 TIRNREKSQSIITRNINLFQKLEIPNHLTFDSTQLRGS---VNQMINREWINLKVNELLV 189 Query: 201 VEFYSR 206 VE+YSR Sbjct: 190 VEYYSR 195 >gi|42556486|gb|AAS19838.1| small ribosomal protein 4 [Pleurozia gigantea] Length = 191 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A + + Sbjct: 8 PGLTNKTLKLKSSYLDRSMSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKIK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R V TI ARQ VNHRH+L+N V+I SY C+ GDVI Sbjct: 67 GSTGQLLLQLLEMRLDNTIFRLGMVSTIPGARQLVNHRHILINDNIVDIPSYNCEPGDVI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K K + + + +R +P ++ ++ F + + D + V ++ N Sbjct: 127 AIKNPEKNQSIITKNMNSFQRPKIPNHLVLDS----TQFRGLVNKTIDREW-VDLKINEL 181 Query: 199 LVVEFYSR 206 LVVEFYSR Sbjct: 182 LVVEFYSR 189 >gi|42556412|gb|AAS19801.1| small ribosomal protein 4 [Frullania tamarisci] Length = 191 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + L KQK++ +YG ++EK+ + A +G T LI LE RLD I++ Sbjct: 30 KISQYRYSLEEKQKLRFHYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV--IEVKQKSKQLASVLEASQLAE 161 PTI ARQ VNH+H ++N +VNI SY C+ GD+ I +QKSK + + + + Sbjct: 89 GLAPTIPGARQLVNHKHFVINNFTVNIPSYNCELGDMYTIRNRQKSKSIIT-RNMNSFQK 147 Query: 162 RDVPEYISVNHDNMVATF-VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + RI + + + + LVVE+YSR Sbjct: 148 LEIPNHLTFDSTQLRGSINQRIDCN--SINFKI--NELLVVEYYSR 189 >gi|42405298|gb|AAS13475.1| rps4 small ribosomal protein [Dichelodontium nitidum] Length = 195 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE R D I++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNILFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 TI ARQ VNHRH+LVN VNI SYRCK D I +K Sbjct: 93 GMASTIPGARQLVNHRHILVNDCIVNIPSYRCKPQDFIIIK 133 >gi|11878067|gb|AAG40782.1| small ribosomal protein 4 [Haplomitrium mnioides] Length = 197 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 12/167 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD +++R Sbjct: 37 KVSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+++N ++V+ Y C+ D+I K + + + + Sbjct: 96 GMASTIPEARQLVNHRHIMINYKTVDAPGYNCEPRDIITTKNPMESRLGMAKGMDFIQSK 155 Query: 164 VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P ++ ++ V +I SLK + LVVE+YSR Sbjct: 156 IPNHLFLDSSKGVGLVNQIIDREWISLK-------INELLVVEYYSR 195 >gi|194738536|gb|ACF93825.1| small ribosomal protein 4 [Leptoscyphus intermedius] Length = 177 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P ++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLIFDPIKLRGSITQIINREWINLK-------INELLVVEYYSR 175 >gi|39546759|gb|AAR28106.1| small ribosomal protein 4 [Pellia epiphylla] gi|46811036|gb|AAT01836.1| small ribosomal protein 4 [Pellia epiphylla] Length = 195 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 6/144 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKP-SYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + S G GQ +K S + ++L KQK++ +YG ++ Sbjct: 3 RTKIIRRLG-TLPGLTSKILELES---GYIGQSTPNKKVSQYRIRLEEKQKLRFHYG-LT 57 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L LE RLD I++R PTI ARQ VNHRH+L+N Sbjct: 58 ERQLLKYVRIARKAKGSTGQILSQPLEMRLDNIIFRLGMSPTIPGARQLVNHRHILINDD 117 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQL 150 +V+I SY C+ DVI V + + + Sbjct: 118 TVDIPSYNCEPKDVITVNNRKESV 141 >gi|194738498|gb|ACF93806.1| small ribosomal protein 4 [Leptoscyphus australis] Length = 177 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGEVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY CK GD++ ++ K K + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINNDIVDIPSYNCKPGDILTIRNKQKSQFIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGS---VNQMINREWINLKINELLVVEYYSR 175 >gi|46811010|gb|AAT01823.1| small ribosomal protein 4 [Haplomitrium mnioides] Length = 196 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 12/167 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD +++R Sbjct: 36 KVSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 94 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+++N ++V+ Y C+ D+I K + + + + Sbjct: 95 GMASTIPEARQLVNHRHIMINYKTVDAPGYNCEPRDIITTKNPMESRLGMAKGMDFIQSK 154 Query: 164 VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P ++ ++ V +I SLK + LVVE+YSR Sbjct: 155 IPNHLFLDSSKGVGLVNQIIDREWISLK-------INELLVVEYYSR 194 >gi|42556484|gb|AAS19837.1| small ribosomal protein 4 [Pleurozia conchifolia] Length = 191 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A + + Sbjct: 8 PGLTNKTLKLKSSYLDRSMSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKIK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R V TI ARQ VNHRHVL+N V+I SY C+ GDVI Sbjct: 67 GSTGQLLLQLLEMRLDNTIFRLGMVSTIPGARQLVNHRHVLINDNIVDIPSYNCEPGDVI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR--IPSSLKDVPYPVIMQPN 198 +K K + + + +R +P NH + +T R + ++ + + Sbjct: 127 AIKNPEKNKSIITKNMNSFQRPKIP-----NHLVLDSTQFRGLVNKTIDREWIDLKINEL 181 Query: 199 LVVEFYSR 206 LVVEFYSR Sbjct: 182 LVVEFYSR 189 >gi|32401789|gb|AAP80883.1| small ribosomal protein 4 [Picea orientalis] Length = 192 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 27/203 (13%) Query: 18 NLWGRPKSPVNTRSYGPGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDIS 66 L GRPK+ PGL +R K+ K S + ++ KQK++ +YG ++ Sbjct: 1 TLVGRPKT-------LPGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQKLRFHYG-LT 52 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A R++G T L+ LE R D I+++ PTI ARQ VNH H+ VN Sbjct: 53 ERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNILFQLGMAPTIPGARQLVNHGHIRVNDH 112 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSS 185 V+I SY CK DVI ++ + + + + L +RD +P +++ H F+ + Sbjct: 113 MVDIPSYPCKPQDVITIRDQQRLRDIIRKNLDLFQRDKLPNHLTF-HSLQYKGFI---NQ 168 Query: 186 LKDVPYPVIMQPN--LVVEFYSR 206 + D + + ++ N LVVE+YSR Sbjct: 169 IIDSKW-ISLKINELLVVEYYSR 190 >gi|67036064|gb|AAY62958.1| small ribosomal protein subunit 4 [Isopterygiopsis muelleriana] Length = 195 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E RLD +++R Sbjct: 34 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQSPEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K A + Sbjct: 93 GMAPTIPGARQLVNHRHILVNDCIVDIPSYRCKPQDFITIKNQRKSEAII 142 >gi|194738496|gb|ACF93805.1| small ribosomal protein 4 [Leptoscyphus antarcticus] Length = 177 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + + LVVE+YSR Sbjct: 135 KIPSHLTFDSIKLRGS---VNQMINREWINLKINELLVVEYYSR 175 >gi|39546763|gb|AAR28108.1| small ribosomal protein 4 [Porella pinnata] gi|49182782|gb|AAT57853.1| small ribosomal protein [Porella pinnata] Length = 195 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T L+ LE RLD ++ Sbjct: 34 KISQYRIRLEEKQKLRFHYG-LTERQLLKYIRTARNAKGSTGQILLQLLEMRLDNTIFCL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLAER 162 TI ARQ VNH+H+ +N +V+I SY CK GD+I ++ + K + + + + Sbjct: 93 GMASTIPGARQLVNHKHISINNDTVDIPSYNCKPGDIITIRNREKSQSIITRNINSFKKL 152 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P +++ + + + + + + + LVVE+YSR Sbjct: 153 EIPNHLTFDSTQLRGS---VNQMINREWINLKVNELLVVEYYSR 193 >gi|157689428|gb|ABV65270.1| ribosomal protein S4 [Bruguiera gymnorhiza] Length = 148 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 9/152 (5%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 M+ +YG ++E++ + A +++G T L+ +E RLD I++R TI ARQ VN Sbjct: 1 MRFHYG-LTERQLLKYVRIAAKAKGSTGQVLLQLVEMRLDNILFRLGMASTIPRARQLVN 59 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQLAERDVPEYISVNHDNM 175 HRH+LVNGR V+I SYRCK D+I + QKS+ + S + ++P ++++ H Sbjct: 60 HRHILVNGRIVDIPSYRCKPRDIITARDEQKSRTMIQNYLDS-FPQEELPNHLTL-HPFQ 117 Query: 176 VATFVRIPSSLKDVPYPVI-MQPNLVVEFYSR 206 V + + D + V+ + LVVE+YSR Sbjct: 118 YKGLV---NQIIDSKWVVLKINELLVVEYYSR 146 >gi|320455026|dbj|BAJ65660.1| small ribosomal protein 4 [Metzgeria kinabaluensis] Length = 187 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGLLLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 VPTI AARQ VNH H+ +N V+I SY C+ GD+I +K + + + ++E + L + Sbjct: 93 GMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDIITIKNQERYRSIIMERLNSLQKP 152 Query: 163 DVPEYISVNHDNMVATFVRI 182 +P ++ + + + R+ Sbjct: 153 GIPNHLVFDSTKFIGSVNRM 172 >gi|194738560|gb|ACF93837.1| small ribosomal protein 4 [Leptoscyphus porphyrius] Length = 177 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L + Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFPKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + +I + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQIINREWINLK-------INELLVVEYYSR 175 >gi|51458157|gb|AAU03427.1| ribosomal protein small subunit 4 [Asplenium yunnanense] Length = 194 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++ A+Q+ + YG ++E++ + A R+RG T + LE RLD Sbjct: 27 QSTSRKISQFCVRXEAQQRXRFNYG-LTERQLLRYVRIARRTRGSTGQVPLQLLEMRLDN 85 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ Sbjct: 86 VLFHLGIASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALGNKYL 145 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 146 LGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 192 >gi|320455022|dbj|BAJ65658.1| small ribosomal protein 4 [Metzgeria americana] Length = 188 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 34 KISQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKTKGSTGLLLLQLLEMRLDNIIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 VPTI AARQ VNH H+ +N V+I SY C+ GD+I +K + + + ++E + L + Sbjct: 93 GMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDIITIKNQERYRSIIMERLNSLQKP 152 Query: 163 DVPEYISVNHDNMVATFVRI 182 +P ++ + + + R+ Sbjct: 153 GIPNHLVFDSTKFIGSVNRM 172 >gi|59803311|gb|AAX07764.1| Rps4 [Pellia appalachiana] Length = 194 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 1/107 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 35 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILSQPLEMRLDNIIFRL 93 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 PTI ARQ VNHRH+L+N +V+I SY C+ DVI V + + + Sbjct: 94 GMSPTIPGARQLVNHRHILINDDTVDIPSYNCEPKDVITVNNRKESV 140 >gi|118724373|gb|ABL10760.1| ribosomal protein small subunit 4 [Pellaea sagittata] Length = 191 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + +E RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLIEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 83 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 141 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 142 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 189 >gi|212004151|gb|ACJ15384.1| Rps4 [Pellaea andromedifolia] Length = 178 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 6/161 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F ++L AKQ+ + YG ++E++ + A ++RG T + LE RLD ++++ Sbjct: 20 FCVRLEAKQRXRLNYG-LTERQXLKYIRIARKTRGSTGQVPLQLLEMRLDNVIFQLGIAS 78 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ VNHRH+LVN R V+I S RCK D+I ++ + + + +VP++ Sbjct: 79 TIPAARQLVNHRHILVNRRIVDIPSXRCKPKDIITIRNRPTSYNAA-KVESFGRDEVPDH 137 Query: 168 --ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S++ N V ++ + V + LVVE++SR Sbjct: 138 LTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 176 >gi|212004187|gb|ACJ15402.1| Rps4 [Pellaea sagittata] Length = 188 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + +E RLD Sbjct: 21 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLIEMRLDN 79 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 80 VIFQLGMASTIPAARQLVSHRHILVNHRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 138 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 139 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 186 >gi|311223008|gb|ADP76586.1| small ribosomal protein 4 [Pellia epiphylla] gi|311223010|gb|ADP76587.1| small ribosomal protein 4 [Pellia epiphylla] Length = 189 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILSQPLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+L+N +V+I SY C+ DVI V + Sbjct: 89 GMSPTIPGARQLVNHRHILINDDTVDIPSYNCEPKDVITVNNR 131 >gi|294337236|emb|CAQ52767.1| ribosomal protein S4 [Pinnatella mucronata] Length = 202 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLESS---SINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T + E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D+I +K + K + + + ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRKSETIISKNMEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|118625991|emb|CAL39317.1| small ribosomal protein 4 [Gongylanthus reniformis] Length = 202 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIG-----ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS+ + KI RR+G N +PKS RS K S + ++L K Sbjct: 1 MSRYRGPRVKIIRRLGVLPGSTNKTLKPKSGYIDRSIS--------NKKVSQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++E++ + A ++G T L+ E R D ++R PTI ARQ Sbjct: 53 QKLRFHYG-LTERQLLKYVRIAREAKGSTGQVLLQLPEMRSDNTIFRLGMAPTIPGARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNH H+ +N V+I SY C+ GD+I VK K K + + + L + P +++++ Sbjct: 112 VNHGHISINNSIVDIPSYNCEPGDIITVKDKRKSRSVITKNINLFKNLRTPSHLTLDSTE 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + ++ + + LVVE+YSR Sbjct: 172 LRGS---VDQTINREWIDLKVNELLVVEYYSR 200 >gi|194738522|gb|ACF93818.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] gi|194738524|gb|ACF93819.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] gi|194738526|gb|ACF93820.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] gi|194738554|gb|ACF93834.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] gi|194738556|gb|ACF93835.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] gi|194738562|gb|ACF93838.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] Length = 177 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 93/168 (55%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + ++ + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQMINREWINLK-------INELLVVEYYSR 175 >gi|118724395|gb|ABL10771.1| ribosomal protein small subunit 4 [Paragymnopteris bipinnata] Length = 186 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 19 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 77 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR D+I ++ + +V + Sbjct: 78 VIFQLGMASTIPAARQLVSHRHILVNCRIVDIPSYRRNPKDIITIRNRPTSYNAV-KVES 136 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 137 FVRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 184 >gi|92417449|gb|ABE76820.1| ribosomal protein subunit 4 [Pellia epiphylla] Length = 199 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNH H+++N +V+I SY C+ DVI +K ++K + + + + Sbjct: 97 GMSPTIPGARQLVNHGHIVINDYTVDIPSYNCEPRDVITIKNRNKSQSLITKNIDSFRKP 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + ++ + + LVVE+YSR Sbjct: 157 KIPNHLTFDFTKFRGS---VNQTIDRECIDLKINELLVVEYYSR 197 >gi|311223014|gb|ADP76589.1| small ribosomal protein 4 [Pellia neesiana] Length = 189 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILSQPLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+L+N +V+I SY C+ DVI V + Sbjct: 89 GMSPTIPGARQLVNHRHILINDDTVDIPSYNCEPKDVITVNNR 131 >gi|328541070|gb|AEB21759.1| ribosomal protein S4 [Zoopsis macrophylla] Length = 199 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKLKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLPEMRLDNTILRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 135 MIRDKPKSQSMITKNINLFQNLKIPSHLAFDPIKLCGS---VNQTIDRESVNLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|118724511|gb|ABL10829.1| ribosomal protein small subunit 4 [Bommeria hispida] Length = 180 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 13 QSASKKIXQFCVRLEAKQRLRLNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 71 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRHVLVN R V+I SYR K D+I ++ + + + Sbjct: 72 VIFQLGMASTIPAARQLVSHRHVLVNRRIVDIPSYRRKPNDIITIRNRPTSYNAA-KGES 130 Query: 159 LAERDVPEYISVN 171 L +VP++++++ Sbjct: 131 LGRDEVPDHLTLS 143 >gi|42556480|gb|AAS19835.1| small ribosomal protein 4 [Pellia sp. Koponen et al. 47823] gi|311223012|gb|ADP76588.1| small ribosomal protein 4 [Pellia endiviifolia] Length = 191 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K + SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKLESSYINQSTPNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+++N +V+I SY C+ DVI Sbjct: 67 GSTGEVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHGHIVINDYTVDIPSYNCEPRDVI 126 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K ++K + + + + +P +++ + + + ++ + + LV Sbjct: 127 TIKNRNKSQSLITKNIDSFRKPKIPNHLTFDFTKFRGS---VNQTIDRECIDLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|311223016|gb|ADP76590.1| small ribosomal protein 4 [Pellia neesiana] Length = 189 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L LE RLD I++R Sbjct: 30 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQILSQPLEMRLDNIIFRL 88 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+L+N +V+I SY C+ DVI V + Sbjct: 89 GMSPTIPGARQLVNHRHILINDDTVDIPSYNCEPKDVITVNNR 131 >gi|328541068|gb|AEB21758.1| ribosomal protein S4 [Zoopsis leitgebiana] Length = 199 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 16 PGLTSKTLKLKSSYNDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ E RLD + R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 75 GSTGQVLLQLPEMRLDNTILRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCELGDII 134 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + + ++ + + LV Sbjct: 135 MIRDKPKSQSMITKNINLFQNSKIPSHLAFDPIKLCGS---VNQTIDRESVNLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|51458153|gb|AAU03425.1| ribosomal protein small subunit 4 [Asplenium laciniatum] Length = 189 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A +RG T + LE RLD Sbjct: 22 QSTSRKISQFCVRLZAKQRLRFNYG-LTERQLLRYVRIARITRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ PTI AARQ VNHRH+LVN V+I SYR K D I V+ + ++ S Sbjct: 81 VLFHLGIAPTIPAARQLVNHRHILVNNFIVDIPSYRRKPKDSITVRNRPTSCNALGNKSL 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|283549378|dbj|BAI66351.1| small ribosomal protein 4 [Mizutania riccardioides] Length = 194 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 5/172 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G+ L G K + ++S +K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKVIRRLGD-LPGSTKKILESKSSSIDRSTSSKKV--SQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A + +G T + LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRLARKFKGSTGQVSLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVN 171 + +N V+I SY C+ GD+ VK + + +L+ L + +VP +++ + Sbjct: 117 ISINEDIVDIPSYNCEPGDITTVKGTERSQSIILKNINLFPKSEVPSHLTFD 168 >gi|116008993|gb|ABJ52165.1| ribosomal protein S4 [Phyllostachys edulis] Length = 198 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 6/142 (4%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L + K + ++L+ KQK++ +YG ++E++ A +++ T L+ L Sbjct: 27 GSNLKKKFHSGKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLL 85 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 E RLD I++R TI ARQ VNHRH+LVN R V+I S+RCK D+I K Q + Sbjct: 86 EMRLDNILFRLGMASTIPEARQLVNHRHILVNRRIVDIPSFRCKPRDIITT--KDNQRSK 143 Query: 153 VLEASQLAERD---VPEYISVN 171 L + +A D +P++++++ Sbjct: 144 CLVQNSIASSDPGKLPKHLTID 165 >gi|11467160|ref|NP_054461.1| ribosomal protein S4 [Marchantia polymorpha] gi|417729|sp|P26866|RT04_MARPO RecName: Full=Ribosomal protein S4, mitochondrial gi|250822|gb|AAB22414.1| ribosomal protein S4 [Marchantia polymorpha=liverwort, Peptide Mitochondrial, 196 aa] gi|786244|gb|AAC09458.1| rps4 [Marchantia polymorpha] Length = 196 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 102/192 (53%), Gaps = 8/192 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 +S+ K+ R+I EN+W K + + L Q++ K S F +QL+ +K+ +YG++ Sbjct: 3 ASRFKVCRQILENVWQTKKLTLKQKFLISELQKQKKNKKQSDFSIQLQTIKKLSLFYGNL 62 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 KK + + + D ++L+ +E RLD I+ R F T+F ARQ ++H+++ VN Sbjct: 63 PIKKMQ---RAKTHTYIDKKNSLLFNIEKRLDVILVRLNFCSTMFQARQLISHKNICVNY 119 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQL--ASVLEASQL--AERDVPEYISVNHDNMVATFVR 181 + VNI ++ GD+I +++ S +++ + Q R P ++ VN+ + A + Sbjct: 120 KKVNIPGFQVSNGDLISIQENSLDFFKSNIRKNFQTNRIRRMKPNHLEVNYKTLKAVVLY 179 Query: 182 IPSSLKDVPYPV 193 P ++ PY + Sbjct: 180 EPQQIQ-FPYKI 190 >gi|212004183|gb|ACJ15400.1| Rps4 [Pellaea sp. UC 1795070] Length = 180 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 13 QSASKKIXQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 71 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR K D+I ++ + +V + Sbjct: 72 VIFQLGMASTIPAARQLVSHRHILVNRRIVDIPSYRRKPKDIITIRNRPTSYNAV-KVES 130 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP++ +S++ N V ++ + V + LVVE++SR Sbjct: 131 FGRDEVPDHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 178 >gi|42556500|gb|AAS19845.1| small ribosomal protein 4 [Schiffneria hyalina] Length = 191 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N ++I SY + GD+I Sbjct: 67 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISINKNIIDIPSYIREAGDII 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K K + + + L ++ +P +++ + + + +I + +LK + Sbjct: 127 TMRDKQKSKSMITKNINLFQKLKIPSHLTFDLTQLQGSVNQIVNREWVNLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|326565699|gb|EGE15862.1| 30S ribosomal protein S4 [Moraxella catarrhalis 12P80B1] Length = 131 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 7/121 (5%) Query: 8 KHKIDRRIGENLW---GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 K K+ RR G +L G V T+ G PG HG ++K S + QLR KQK+K+ Y Sbjct: 8 KLKLSRREGTDLQLKSGVKPYDVKTKKAGRVPGQHGNS-QNKTSEYASQLREKQKVKRMY 66 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G + E++F + +KEA R RG T NL+ LE RLD +VYR F T ARQ V+HR ++ Sbjct: 67 G-VLERQFSNYYKEAARERGATGENLLVTLERRLDNVVYRMGFGATRAEARQLVSHRAIM 125 Query: 123 V 123 + Sbjct: 126 L 126 >gi|283824452|gb|ADB43042.1| small ribosomal protein 4 [Cyanolophocolea echinella] gi|283824454|gb|ADB43043.1| small ribosomal protein 4 [Cyanolophocolea echinella] gi|283824456|gb|ADB43044.1| small ribosomal protein 4 [Cyanolophocolea echinella] gi|283824458|gb|ADB43045.1| small ribosomal protein 4 [Cyanolophocolea echinella] gi|283824460|gb|ADB43046.1| small ribosomal protein 4 [Cyanolophocolea echinella] gi|283824464|gb|ADB43048.1| small ribosomal protein 4 [Cyanolophocolea echinella] gi|283824466|gb|ADB43049.1| small ribosomal protein 4 [Cyanolophocolea echinella] Length = 191 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKILKPKASYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ +N V+I SY C+ GD I Sbjct: 67 GSTGQILLQLLEMRPDNTIFRLGMSSTIPEARQLVNHRHISINNDIVDIPSYNCEPGDTI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K K + + + L ++ +P +++ + + + + + + + LV Sbjct: 127 TIKNKQKSQSVITKNINLFQKLKIPSHLTFDSIKLRGS---VNQMINREWVNLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|42556512|gb|AAS19851.1| small ribosomal protein 4 [Trichotemnoma corrugatum] Length = 187 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ ++G ++E++ + A +++ Sbjct: 4 PGLTSKTLKPKSSYIDRSTSTKKVSQYRIRLEEKQKLRFHHG-LTERQLLKYVRIARKAK 62 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ ++ V+I SY C+ G++I Sbjct: 63 GSTGQVLLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHISIDNDIVDIPSYNCEPGNII 122 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK K K + + + L ++ +P +++ + + FV S + V + LV Sbjct: 123 TVKNKQKSQSIIAKNIDLFQKSKIPSHLTFDSTKLQG-FVNQTISRELVNLKI--NELLV 179 Query: 201 VEFYSR 206 VE+YSR Sbjct: 180 VEYYSR 185 >gi|29422411|gb|AAO84601.1| small ribosomal protein 4 [Anacolia laevisphaera] Length = 144 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 3/93 (3%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+ Sbjct: 1 YG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHI 59 Query: 122 LVNGRSVNIGSYRCKEGDVIEVK--QKSKQLAS 152 LVN V+I SYRCK D I +K QKS+ + S Sbjct: 60 LVNDHIVDIPSYRCKPQDFITIKDRQKSQTIIS 92 >gi|194033318|ref|YP_002000439.1| ribosomal protein S4 [Oedogonium cardiacum] gi|156619064|gb|ABU88210.1| ribosomal protein S4 [Oedogonium cardiacum] gi|186968935|gb|ACC97258.1| ribosomal protein S4 [Oedogonium cardiacum] Length = 2801 Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 8/124 (6%) Query: 34 PGLHGQRR--KSKPSY-----FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSH 86 PG HG+ + K KP F ++L+ KQ+++ +YG I+EK+ + ++A + +G T Sbjct: 45 PGQHGRSKSFKKKPYESNEYDFLIRLKLKQRIRYHYG-ITEKQLVNYVRQARKIKGSTGR 103 Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 L+ LE RLD V+R PTI AARQ + H H+ VN + V+I SY CK D+I K Sbjct: 104 VLLRLLEMRLDNTVFRLHMAPTIRAARQLITHGHIYVNNKKVSIPSYSCKPKDIITPAPK 163 Query: 147 SKQL 150 ++ + Sbjct: 164 TRSI 167 >gi|294337218|emb|CAQ52758.1| ribosomal protein S4 [Neckera urnigera] Length = 202 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLG-TLPGLTNKTSQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R TI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMALTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN V+I SYRCK D I +K + K + + +L ++ +P Y S+ +V Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NQILDRESIGLK-------INELLVVEYYSR 200 >gi|63145913|gb|AAY33894.1| small ribosomal protein 4 [Pallavicinia xiphoides] Length = 192 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + S+P Y + ++L KQK++ +YG ++E++ + A ++ Sbjct: 9 PGLSYKMLGSRPGYTNRLTANKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARGAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD IV+R PTI AARQ VNHRH+++N VNI SY CK DVI Sbjct: 68 GSTGQILLQLLEMRLDNIVFRLGMAPTIPAARQLVNHRHIIINDNIVNIPSYNCKPKDVI 127 Query: 142 EV-KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 + ++ +L + ER +P +++ + + +I SLK + Sbjct: 128 TIGNRRESRLVITKNINLFRERRIPNHLTFDSTRFCGSVNQIIDREWISLK-------IN 180 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 181 ELLVVEYYSR 190 >gi|227345119|gb|ACP28112.1| small ribosomal protein 4 [Chiloscyphus helmsianus] Length = 183 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE R D ++R Sbjct: 22 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRL 80 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD+I ++ K K + + + L ++ Sbjct: 81 GMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIITIRDKHKSQSMITKNINLFQKL 140 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + + LVVE+YSR Sbjct: 141 KIPSHLTFDSIKLQGS---VNQMINREWINLKINELLVVEYYSR 181 >gi|16930564|gb|AAL31959.1| ribosomal protein small subunit 4 [Goniopteris poiteana] Length = 189 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S+F ++L AKQ+++ +YG ++E++ + A ++ G T + LE RLD Sbjct: 22 QSSSRKISHFCVRLEAKQRLRFHYG-LTERQLPRYVRIARKTTGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ + TI AARQ V +H+LVN V+I SYRCK D+I V+ + + L Sbjct: 81 VIFHLRMASTIPAARQLVYLKHILVNNHIVDIPSYRCKPKDIITVRNRPTS-HNALGGES 139 Query: 159 LAERDVPEYISVN--HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L P++++++ N V ++ + V + LVVE+YSR Sbjct: 140 LVGGKTPDHLTISLLEGNRPTGLVNRVANRESVNLSI--NELLVVEYYSR 187 >gi|32401874|gb|AAP80925.1| small ribosomal protein 4 [Metasequoia glyptostroboides] Length = 136 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 1/97 (1%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R ++ Sbjct: 1 LKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMALSMPE 59 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 ARQ +NHRH+ VN R V+I SYRCK D+I +K K + Sbjct: 60 ARQLINHRHIRVNDRIVDIPSYRCKPQDLISIKDKQR 96 >gi|194738518|gb|ACF93816.1| small ribosomal protein 4 [Leptoscyphus cleefii] Length = 177 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + + + + + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGS---VNQMINREWINLKINELLVVEYYSR 175 >gi|3098262|gb|AAC15579.1| small ribosomal protein 4 [Thamnobryum alopecurum] Length = 198 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D I++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH H+LVN V+I SYRCK D I +K + K + + + ++ Sbjct: 96 GMAPTIPGARQLVNHGHILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKS 155 Query: 164 -VPE---YISVNHDNMVATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + R LK + LVVE+YSR Sbjct: 156 KIPNHLTYSSLEKKGLVNQILDRESIGLK-------INELLVVEYYSR 196 >gi|294337242|emb|CAQ52770.1| ribosomal protein S4 [Porotrichum bigelovii] Length = 202 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 17/170 (10%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 41 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNHRH+ VN V+I SYRCK D I +K + K + + + ++ Sbjct: 100 GMAPTIPGARQLVNHRHISVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKS 159 Query: 164 -VPE---YISVNHDNMVATFV---RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P Y S+ +V + I S + ++ LVVE+YSR Sbjct: 160 KIPNHLTYSSLEKKGLVNQILDRESIGSKINEL---------LVVEYYSR 200 >gi|66990658|emb|CAI29107.1| small ribosomal protein 4 [Plagiochila heterostipa] Length = 197 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 13/132 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 19 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE R D ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRPDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASV 153 + K K A V Sbjct: 138 TIGNKQKSRAIV 149 >gi|42556462|gb|AAS19826.1| small ribosomal protein 4 [Nardia assamica] Length = 191 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTSKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD V+R PTI ARQ VNHRH+ +N ++I SY C+ GD I Sbjct: 67 GSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHRHISINNDIIDIPSYNCEPGDKI 126 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + + + ++ + +LK + Sbjct: 127 TIKNKQKSQSIITKNISLFQKLKIPSHLTFDLTQLQGSVNQMVNREWVNLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|51458148|gb|AAU03423.1| ribosomal protein small subunit 4 [Asplenium hallbergii] Length = 189 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 20/177 (11%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A +RG T + LE RLD Sbjct: 22 QSTSRKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARGTRGSTGQVPLQLLEMRLDN 80 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYR K D I V+ ++ ++ S Sbjct: 81 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRRKPRDFITVRNRATSCNALRSKSP 140 Query: 159 LAERDVPEYISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ P++++V+ N VA I ++ ++ LVVE+YSR Sbjct: 141 VGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL---------LVVEYYSR 187 >gi|67035947|gb|AAY62900.1| small ribosomal protein subunit 4 [Forsstroemia trichomitria] Length = 198 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 37 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 95 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+HVL+N V+I SYR K D I +K + K + + +L ++ Sbjct: 96 GMAPTIPGARQLVNHKHVLINDSMVDIPSYRRKPQDFITIKNQRKSETIISKNIELYQKS 155 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 156 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 196 >gi|37992523|gb|AAR06440.1| small ribosomal protein 4 [Garovaglia binsteadii var. mirabilis] Length = 194 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 1/103 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E R D I++R Sbjct: 33 KISQYRVRLEEKQKLRFHYG-ITERQLPNYVRIARKTKGSTGEVSLQLPEMRSDNIIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 PTI ARQ VNHRH+LVN VNI SYRCK D I VK + Sbjct: 92 GMAPTIPGARQLVNHRHILVNDCMVNIPSYRCKPQDFIIVKNE 134 >gi|45271076|gb|AAS56926.1| ribosomal protein small subunit 4 [Coniogramme fraxinea] Length = 198 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 31 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 89 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 I+++ TI AARQ VNHRH+LVN R V+I SYR K D++ ++ + Sbjct: 90 IIFQLGMASTIPAARQLVNHRHILVNHRVVDIPSYRRKPRDILTIRSR 137 >gi|328541036|gb|AEB21742.1| ribosomal protein S4 [Isolembidium anomalum] Length = 199 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 20/204 (9%) Query: 10 KIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI RR+G L G +PKS N RS K S + ++L KQK++ +YG Sbjct: 7 KIIRRLGA-LPGLTSKILKPKSGYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQSLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L +P +++ + + + I Sbjct: 117 NNNIVDIPSYNCELGDIITIREKQKSQSVITKNINLFRNLKIPSHLTFDSIKLCGS---I 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 NQTINREWIDLKINELLVVEYYSR 197 >gi|18027942|gb|AAL55895.1| ribosomal protein S4 [Coniogramme fraxinea] Length = 191 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 2/168 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 24 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ VNHRH+LVN R V+I SYR K D++ ++ + + ++ Sbjct: 83 IIFQLGMASTIPAARQLVNHRHILVNHRVVDIPSYRRKPRDILTIRSRPTS-RNAAKSEY 141 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L +P+++ ++ + + + LVVE+YSR Sbjct: 142 LGGNKIPDHLILSLPKTGEPVGLVNHMANRESVDLNINELLVVEYYSR 189 >gi|42556488|gb|AAS19839.1| small ribosomal protein 4 [Porella platyphylla] Length = 191 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PG + K K SY + ++L KQK++ +YG ++E++ + A ++ Sbjct: 8 PGFTAKTLKPKSSYIDRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRTARNAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++ TI ARQ VNH+H+ +N +V+I SY C+ GD+I Sbjct: 67 GSTGQILLQLLEMRLDNTIFCLGMASTIPGARQLVNHKHISINNDTVDIPSYNCEPGDII 126 Query: 142 EVKQKSKQLASVL-EASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ + K + + + + ++P +++ + + + + + + + LV Sbjct: 127 TIRNREKSQSIITRNINSFKKLEIPNHLTFDSTQLRGS---VNQMINREWINLKVNELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|52788794|gb|AAU87377.1| ribosomal protein small subunit 4 [Coniogramme fraxinea] gi|99640377|emb|CAJ45119.1| putative ribosomal protein S4 gene [Coniogramme fraxinea] Length = 199 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 1/108 (0%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 32 QSASKKISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDN 90 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 I+++ TI AARQ VNHRH+LVN R V+I SYR K D++ ++ + Sbjct: 91 IIFQLGMASTIPAARQLVNHRHILVNHRVVDIPSYRRKPRDILTIRSR 138 >gi|283549376|dbj|BAI66350.1| small ribosomal protein 4 [Mizutania riccardioides] Length = 194 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 5/172 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G L G K + ++S +K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKVIRRLGA-LPGSTKKILESKSSSIDRSTSSKKV--SQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A + +G T + LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRLARKFKGSTGQVSLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVN 171 + +N V+I SY C+ GD+ VK + + +L+ L + +VP +++ + Sbjct: 117 ISINEDIVDIPSYNCEPGDITTVKGTERSQSIILKNINLFPKSEVPSHLTFD 168 >gi|194738508|gb|ACF93811.1| small ribosomal protein 4 [Leptoscyphus amphibolius] Length = 177 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD + ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDTLTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VP +++ + + FV + + + + LVVE+YSR Sbjct: 135 KVPSHLTFDPIKLRG-FVNQMINRESINLKI--NELLVVEYYSR 175 >gi|141446755|gb|ABO87584.1| ribosomal protein S4 [Dasypyrum villosum] Length = 99 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 1/99 (1%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K + ++L+ KQK++ +YG ++E++ A +++ T L+ LE RLD I++R Sbjct: 2 GKKEQYRIRLQEKQKLRFHYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFR 60 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 TI ARQ VNHRH+LVNG VNI S+RCK D+I Sbjct: 61 LGMASTIPGARQLVNHRHILVNGHIVNIRSFRCKPRDII 99 >gi|310707258|gb|ADP08974.1| Rps4 [Lindsaea diplosora] Length = 136 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 9/134 (6%) Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A +++G T L+ LE RLD I+++ TI AARQ VNHRH+ VN R V++ SYRCK Sbjct: 6 ARKTKGSTGQVLLQLLEMRLDNILFQLGLASTIPAARQLVNHRHIFVNHRIVDVPSYRCK 65 Query: 137 EGDVIEVKQKSKQLASV--LEASQLAERDVPEYI--SVNHDNMVATFVRIPSSLKDVPYP 192 D+I ++ QL S + + E D+P ++ S++ +N FV ++ + V Sbjct: 66 PKDIITIRH---QLISYNKMSSKSFGEGDIPHHLTASLSENNRPVGFVNSIANRECVDLN 122 Query: 193 VIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 123 I--NELLVVEYYSR 134 >gi|37992517|gb|AAR06437.1| small ribosomal protein 4 [Floribundaria aurea] Length = 190 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T + E R D +++R Sbjct: 29 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRSDNVIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYRCK D I +K + K Sbjct: 88 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRCKPQDFITIKNQRK 132 >gi|67035945|gb|AAY62899.1| small ribosomal protein subunit 4 [Dozya japonica] Length = 194 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ E R D +++R Sbjct: 33 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 PTI ARQ VNH+HVL+N V+I SYR K D I +K + K + + +L ++ Sbjct: 92 GMAPTIPGARQLVNHKHVLINDSMVDIPSYRRKPQDFITIKNQRKSETIISKNIELYQKS 151 Query: 164 -VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 152 KIPNHLTYNSLEKKGLVNQI---LDRESIGLKINELLVVEYYSR 192 >gi|51458146|gb|AAU03422.1| ribosomal protein small subunit 4 [Asplenium monanthes] Length = 189 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQK++ YG ++E++ + A +RG T + LE RLD Sbjct: 24 QSTSRKISQFCVRLEAKQKLRFNYG-LTERQLLRYVRIARGTRGSTGQVPLQLLEMRLDN 82 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYR K D I V+ ++ + L + Sbjct: 83 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRRKPRDFITVRNRATS-CNALRSKS 141 Query: 159 LAERDVPEYISV 170 L P++++V Sbjct: 142 LVGDKTPDHLTV 153 >gi|6002031|emb|CAA58923.1| ribosomal protein S4 [Bambusa oldhamii] Length = 196 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 10/174 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLG----ALPGLTRKTPKPGSNLKNKSHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ +NHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLLNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVN 171 +LVN R V+I S+ CK D+I K Q + L + +A D +P++++++ Sbjct: 116 ILVNRRIVDIPSFCCKPRDIITT--KDNQRSKCLVQNSIASSDPGKLPKHLTID 167 >gi|32401773|gb|AAP80875.1| small ribosomal protein 4 [Picea rubens] Length = 191 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 18/186 (9%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 9 PGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKG 67 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D I+++ PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 68 STGQVLLQLLEMRSDNIIFQLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 127 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLV 200 ++ + + + + L +RD +P +++ H F+ + + D + + + LV Sbjct: 128 IRDQQRLRDIIRKNLDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKWISLKINELLV 183 Query: 201 VEFYSR 206 VE+YSR Sbjct: 184 VEYYSR 189 >gi|78102641|gb|ABB21534.1| small ribosomal protein 4 [Plagiochila divergens] Length = 178 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 12 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD-- 139 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD Sbjct: 71 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYTCEPGDNN 130 Query: 140 VIEVKQKSKQLAS 152 I KQKS+ + + Sbjct: 131 TIGNKQKSRAIVT 143 >gi|89147834|gb|ABD62765.1| ribosomal protein 4 [Metzgeria liebmanniana] Length = 126 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 70/112 (62%), Gaps = 1/112 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L +Q ++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 4 KISQYRVRLEGRQXLRFHYG-LTERQLLKYVRIARRTKGSTGLLLLQLLEMRLDNIIFRL 62 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 VPTI AARQ VNH H+ +N V+I SY C+ GD+I +K + + + ++E Sbjct: 63 GMVPTIPAARQLVNHGHISINKDIVDIPSYNCELGDIITIKNQERYRSXIME 114 >gi|66990656|emb|CAI29106.1| small ribosomal protein 4 [Plagiochila sp. Solga & Fischer s.n.] Length = 181 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ A +++ Sbjct: 15 PGLTSKTLKSKSSYIDRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTK 73 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD-- 139 G T L+ LE R D ++R PTI ARQ VNHRH+ +N V+I SY C+ GD Sbjct: 74 GSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIPSYTCEPGDNN 133 Query: 140 VIEVKQKSKQLAS 152 I KQKS+ + + Sbjct: 134 TIGNKQKSRAIVT 146 >gi|46811008|gb|AAT01822.1| small ribosomal protein 4 [Haplomitrium blumei] Length = 193 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 12/167 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD +++R Sbjct: 33 KVSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 91 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI ARQ VNHRH+++N ++V+ Y C+ D+I K + + + + Sbjct: 92 GMASTIPEARQLVNHRHIMINDKTVDAPGYNCEPRDIITTKNPMESRLGMAKGMDSIQSK 151 Query: 164 VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 P ++ ++ V +I SLK + LVVE+YSR Sbjct: 152 KPNHLFIDSSKGVGLVNQIIDREWISLK-------INELLVVEYYSR 191 >gi|194738500|gb|ACF93807.1| small ribosomal protein 4 [Leptoscyphus amphibolius] gi|194738502|gb|ACF93808.1| small ribosomal protein 4 [Leptoscyphus amphibolius] gi|194738504|gb|ACF93809.1| small ribosomal protein 4 [Leptoscyphus amphibolius] gi|194738506|gb|ACF93810.1| small ribosomal protein 4 [Leptoscyphus amphibolius] Length = 177 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD + ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDTLTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + FV + + + + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRG-FVNQMINRESINLKI--NELLVVEYYSR 175 >gi|118626119|emb|CAL39359.1| small ribosomal protein 4 [Odontoschisma denudatum] Length = 202 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSSYSDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD V+R PTI ARQ VNHRH+ +N ++I SY K GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHRHISINNDIIDIPSYDRKPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + + + +I + +LK + Sbjct: 138 TIKDKQKSRSIITKNVNLFQKFKIPSHLTFDLTQLQGSVNQIVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|37992561|gb|AAR06459.1| small ribosomal protein 4 [Hypnella pallescens] Length = 199 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD I++R Sbjct: 38 KISQYRIRLEEKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRL 96 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH++VN VNI SYRCK D I +K + K V + + ++ Sbjct: 97 GMAPTIPGARQLVNHRHIVVNNNIVNIPSYRCKPQDFITIKNQGKSDTIVSKNIEFYQKI 156 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +++ N +I L + + LVVE+YSR Sbjct: 157 KIPNHLTYNFLEKKGLIKQI---LDRESISLKINELLVVEYYSR 197 >gi|194738532|gb|ACF93823.1| small ribosomal protein 4 [Leptoscyphus infuscatus] gi|194738534|gb|ACF93824.1| small ribosomal protein 4 [Leptoscyphus infuscatus] Length = 177 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 21/172 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD + ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDTLTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI--------MQPNLVVEFYSR 206 +P +++ + P L+ +I + LVVE+YSR Sbjct: 135 KIPSHLTFD-----------PIKLRGFVNQMINREWINLKINELLVVEYYSR 175 >gi|212004223|gb|ACJ15420.1| Rps4 [Paragymnopteris vestita] Length = 187 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 20 QSASKKISQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR D+I ++ + + + Sbjct: 79 VIFQLGMASTIPAARQLVSHRHILVNCRIVDIPSYRRNPKDIITIRNRPTSYNAA-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP + +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPNHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|86438884|emb|CAJ55419.1| small ribosomal protein 4 [Plagiochila dependula] Length = 176 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + +SK +Y + ++L KQK +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLESKSNYIDRSTSNKKVSQYRIRLEEKQKXXXHYG-LTERQLLKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD PTI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTXXXXGMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EV--KQKSKQLAS 152 + KQKS+ + + Sbjct: 138 TIGNKQKSRSIVT 150 >gi|194738520|gb|ACF93817.1| small ribosomal protein 4 [Leptoscyphus cuneifolius] Length = 177 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 92/168 (54%), Gaps = 13/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G L+ LE RLD ++R Sbjct: 16 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSXGQVLLQLLEMRLDNTIFRL 74 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 TI ARQ VNHRH+ +N V+I SY C+ GD++ ++ + K + + + L ++ Sbjct: 75 GMSSTIPGARQLVNHRHISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKL 134 Query: 163 DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 +P +++ + + + ++ + +LK + LVVE+YSR Sbjct: 135 KIPSHLTFDPIKLRGSVTQMINREWINLK-------INELLVVEYYSR 175 >gi|307683687|dbj|BAJ19822.1| ribosomal protein S4 [Picea morrisonicola] Length = 201 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 20/187 (10%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T L+ LE R D I+++ PTI ARQ VNH H+ VN V+I SY CK DVI Sbjct: 78 STGQVLLQLLEMRSDNILFQLGMAPTIPGARQLVNHGHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--L 199 ++ + + + + L +RD +P +++ H F+ + + D + + ++ N L Sbjct: 138 IRDQQRLRDIIRKNLDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKW-ISLKINELL 192 Query: 200 VVEFYSR 206 VVE+YSR Sbjct: 193 VVEYYSR 199 >gi|37548851|gb|AAO32694.1| ribosomal protein 4 [Pogonatum aloides] Length = 157 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 74/129 (57%), Gaps = 2/129 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG +E++ + A +++G T L+ LE RLD ++R Sbjct: 29 KVSQYRIRLEEKQKLRFHYGX-TERQLLXYVRIARKAKGSTGQVLLQLLEMRLDNXIFRL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI ARQ VNHRH+LVN V+I SY + GD I V+++ A + + + + Sbjct: 88 GMAPTIPGARQLVNHRHILVNDAIVDIPSYXXEPGDFITVRKRXXSQAIIXKNXDXSXKY 147 Query: 163 DVPEYISVN 171 +P +++ + Sbjct: 148 KIPNHLTFD 156 >gi|32401880|gb|AAP80928.1| small ribosomal protein 4 [Glyptostrobus lineatus] Length = 179 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 1/100 (1%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L+ KQ+++ +YG ++E++ + A R++G T L+ LE RLD I++R Sbjct: 18 YPVRLKEKQRLRFHYG-LTERQLLQYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAL 76 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 TI ARQ VNHRH LVN R V I SYRCK + +K K Sbjct: 77 TIPEARQLVNHRHXLVNDRIVEIPSYRCKPQYFLSIKDKQ 116 >gi|16565361|gb|AAL26199.1|AF313592_1 small ribosomal protein 4 [Isoetes engelmannii] Length = 190 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T + LE R D I+ Sbjct: 29 KASKYRVRLEEKQKLRFHYG-LTERQLLEYVRIARGAKGSTGQVSLQSLEMRSDNIILGL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNH+H+LVN ++NI SYRCK D+I ++ + K A + Sbjct: 88 GMAPTIPGARQMVNHKHILVNSCTINIPSYRCKPKDIITMRNRPKSQAMI 137 >gi|118724515|gb|ABL10831.1| ribosomal protein small subunit 4 [Llavea cordifolia] Length = 187 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 2/168 (1%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K F ++L AKQ+++ YG ++E++ + A ++RG T L+ LE RLD Sbjct: 20 QSASKKIXQFCVRLEAKQRLRFNYG-LTERQLLKYVRVAKKTRGSTGQVLLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 I+++ TI AARQ V+HRH+LVN V+I SYR K D++ ++ + + ++ Sbjct: 79 IIFQLGMASTIPAARQLVSHRHILVNDHIVDIPSYRRKPKDILTIRNRPTS-RNAAKSES 137 Query: 159 LAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 L + P+++ ++ + + + + LVVE+YSR Sbjct: 138 LGGNETPDHLILSLPKNGEPTGLVNHMVNRESVDLNINELLVVEYYSR 185 >gi|229315915|ref|YP_002860141.1| ribosomal protein S4 [Micromonas sp. RCC299] gi|226431200|gb|ACO55605.1| ribosomal protein S4 [Micromonas sp. RCC299] Length = 239 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 8/140 (5%) Query: 10 KIDRRIGENLW-GRPKSPVNTRSYGPGLHGQ-------RRKSKPSYFGLQLRAKQKMKKY 61 K+ R+IG +LW R + + Q RK K + F QL+AKQ +K Sbjct: 11 KVLRKIGVSLWPWRHMTLKQVEKLDKIVQKQSKQTSLLERKKKRTQFAYQLQAKQIVKAL 70 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG+++ F S +K++ + G ++ N S LE RLD I+YRA FV + ARQ ++H+ V Sbjct: 71 YGNLNTSYFISFYKKSLKMIGKSNINFFSQLERRLDCILYRANFVTSFQEARQVISHQKV 130 Query: 122 LVNGRSVNIGSYRCKEGDVI 141 VN +N Y K GD+I Sbjct: 131 CVNTVKINKPGYIVKPGDII 150 >gi|270289723|ref|ZP_06196025.1| 30S ribosomal protein S4 [Chlamydia muridarum Weiss] Length = 147 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 10/147 (6%) Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I EK+ +KE +G+ + + E RLD IVYR F TIFAA+Q V+H HVLVN Sbjct: 2 ILEKQLVKAYKEVVHKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVSHGHVLVN 61 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVATFVR 181 G+ V+ S+ + G I +K+KS++LA V E+ L +D +P Y+S++ V Sbjct: 62 GKKVDRRSFFVRPGMQISLKEKSRRLAIVTES--LENKDQSSLPAYLSLDKAAFKGELVV 119 Query: 182 IPSSLK---DVPYPVIMQPNLVVEFYS 205 P + +P PV +++ EF S Sbjct: 120 SPELDQISSQLPLPV--NVSVICEFLS 144 >gi|78102701|gb|ABB21564.1| small ribosomal protein 4 [Plagiochila obtusa] Length = 176 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 3/111 (2%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ A +++G T L+ LE R D ++ Sbjct: 21 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFSL 79 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLAS 152 PTI ARQ VNHRH+ +N V+I SY C+ GD+I + KQKS+ + + Sbjct: 80 GMSPTIPGARQLVNHRHISINNDIVDIPSYNCEPGDIITIGNKQKSRAIVT 130 >gi|313199636|ref|YP_004021252.1| ribosomal protein S4 [Isoetes flaccida] gi|291575365|gb|ADE18078.1| ribosomal protein S4 [Isoetes flaccida] Length = 202 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 1/110 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A ++G T + LE R D I+ Sbjct: 41 KASKYRVRLEEKQKLRFHYG-LTERQLLEYVRIARGAKGSTGQVSLQSLEMRSDNIILGL 99 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV 153 PTI ARQ VNH+H+LVN ++NI SYRCK D+I ++ + K A + Sbjct: 100 GMAPTIPGARQMVNHKHILVNSCTINIPSYRCKPKDIITMRNRPKSQAMI 149 >gi|75858238|gb|ABA28693.1| small ribosomal protein 4 [Pleurozia paradoxa] Length = 190 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K +Y + ++L KQK++ +YG ++E++ + A + + Sbjct: 7 PGLTNKTLKLKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKIK 65 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R V TI ARQ VNHRH+L+N V+I SY C+ GDVI Sbjct: 66 GSTGQLLLQLLEMRLDNTIFRLGMVSTIPGARQLVNHRHILINDNVVDIPSYNCEPGDVI 125 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 +K K + + + +R +P ++ + + + ++ + + LV Sbjct: 126 TIKNPEKNKSIITKNINSFQRPKIPNHLVFDSTQFRGS---VNKTIDREWIDLKINELLV 182 Query: 201 VEFYSR 206 VE+YSR Sbjct: 183 VEYYSR 188 >gi|147767143|emb|CAN75644.1| hypothetical protein VITISV_031266 [Vitis vinifera] Length = 132 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++ L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLNYVHIARKAKWAIGRVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 E LD I++R TI ARQ VNHRH+LVNGR V+I SY CK Sbjct: 88 EMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPSYCCK 131 >gi|37548871|gb|AAO32704.1| ribosomal protein 4 [Pogonatum subulatum] Length = 137 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI SYRCK Sbjct: 8 ARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIPSYRCK 67 Query: 137 EGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVN 171 D I +K + + A + + ++ +P +++ N Sbjct: 68 PQDFITIKNRQESQAIITKNIDFFQKYKIPNHLTFN 103 >gi|49182712|gb|AAT57818.1| small ribosomal protein [Haplomitrium blumei] Length = 198 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 22/174 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD +++R Sbjct: 34 KVSQYRIRLEEKQKLRFHYG-LTERQLLRYVRIARKAKGSTGQVLLQLLEMRLDNVIFRL 92 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ-------LASVLEA 156 TI ARQ VNHRH+++N ++V+ Y C+ D+I K +K +A +++ Sbjct: 93 GMASTIPEARQLVNHRHIMINDKTVDAPGYNCEPRDIITTKITTKNPMESRLGMAKGMDS 152 Query: 157 SQLAERDVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQPNLVVEFYSR 206 Q +P ++ ++ V +I SLK + LVVE+YSR Sbjct: 153 IQYK---IPNHLFLDSSKGVGLVNQIIDREWISLK-------INELLVVEYYSR 196 >gi|26399120|sp|P59150|RR4_TAKLE RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504727|emb|CAC80628.1| small ribosomal protein 4 [Takakia lepidozioides] Length = 202 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKTLKSKSNYIDRSTSNKKVSQYRVRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R PTI ARQ VNH H+ +N ++I SY + GD+I Sbjct: 78 GSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISMNNNIIDIPSYNREPGDII 137 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 ++ K + + + + L ++ +P ++S + + + ++ + +LK + Sbjct: 138 TIRNKLESRSMISKNINLFQKLKMPSHLSFDLTGLQGSVNQMVNREWVNLK-------IN 190 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 191 ELLVVEYYSR 200 >gi|298204988|emb|CBI34295.3| unnamed protein product [Vitis vinifera] Length = 132 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 33 GPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL 92 G L Q R K S + ++L KQK++ +YG ++E++ + A +++ L+ L Sbjct: 29 GSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTERQLLNYVHIARKAKWAIGRVLLQLL 87 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 E LD I++R TI ARQ VNHRH+LVNGR V+I SY CK Sbjct: 88 EMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPSYCCK 131 >gi|77862521|gb|ABB04533.1| small ribosomal protein 4 [Corsinia coriandra] Length = 201 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 97/166 (58%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + + A +++G T L+ LE RLD I++R Sbjct: 40 KVSQYRIRLEEKQKLRFHYG-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N VNI SY CK DVI +K + K + + + + ++ Sbjct: 99 GMAPTIPGARQLVNHRHILINNNIVNIPSYTCKPKDVITIKNQLKSQSIITKNLNSFQKQ 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ + + + + D + ++++ N LVVE+YSR Sbjct: 159 KIPNHLTFDLMQVKGLI----NEIIDREW-ILLKINELLVVEYYSR 199 >gi|328541144|gb|AEB21796.1| ribosomal protein S4 [Sprucella succida] Length = 200 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 22 RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 +PKS N RS K S + ++L KQK++ +YG ++E++ + A +++ Sbjct: 24 KPKSSYNDRSTS--------NKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 74 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD + R TI ARQ VNHRH+ +N ++I SY C+ GD+I Sbjct: 75 GSTGQILLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNIIDIPSYNCEPGDII 134 Query: 142 EVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + L + +P +++ + + + I ++ + + LV Sbjct: 135 TIRNKQKSRSIITKNVNLFQNLKMPNHLTFDSTKLCGS---INQTINREWINLKINELLV 191 Query: 201 VEFYSR 206 VE+YSR Sbjct: 192 VEYYSR 197 >gi|283824462|gb|ADB43047.1| small ribosomal protein 4 [Cyanolophocolea echinella] Length = 158 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 5/160 (3%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 + ++L KQK++ +YG ++E++ + A +++G T L+ LE R D ++R Sbjct: 1 YRIRLEEKQKLRFHYG-LTERQLLKYMRIARKAKGSTGQILLQLLEMRPDNTIFRLGMSS 59 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE 166 TI ARQ VNHRH+ +N V+I SY C+ GD I +K K K + + + L ++ +P Sbjct: 60 TIPEARQLVNHRHISINNDIVDIPSYNCEPGDTITIKNKQKSQSVITKNINLFQKLKIPS 119 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ + + + + + + + LVVE+YSR Sbjct: 120 HLTFDSIKLRGS---VNQMINREWVNLKINELLVVEYYSR 156 >gi|41323101|gb|AAR99780.1| small ribosomal protein 4 [Chiastocaulon dendroides] gi|41323103|gb|AAR99781.1| small ribosomal protein 4 [Chiastocaulon dendroides] Length = 202 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK +Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 19 PGLTSKILKSKSNYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLVKYMRIARKAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ GD+I Sbjct: 78 GSTGQLLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSYNCEPGDII 137 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 ++ K K + + + + + +P +++ + + + + + + + LV Sbjct: 138 TIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLQGS---VNQMINREWINLKINELLV 194 Query: 201 VEFYSR 206 VE+YSR Sbjct: 195 VEYYSR 200 >gi|80974144|gb|ABB53765.1| small ribosomal subunit protein 4 [Euptychium setigerum] Length = 202 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 16/211 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G +S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLG-TLPGLTNKIPQLKS--SSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITEQQLLNYVRIARKTKGSTGEVLLQLPEMRSDNILFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPE---YISVNHDNMV 176 +LVN VN YRCK D I VK + + + ++ +P YI + +V Sbjct: 117 ILVNDCIVNKPRYRCKPQDFIIVKNEKNSEGIINKDGDFHQKSKIPNHLTYIFLEKKGLV 176 Query: 177 ATFV-RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R LK + LVVE+YSR Sbjct: 177 NKILDRESIGLK-------INELLVVEYYSR 200 >gi|150406488|ref|YP_001315127.1| ribosomal protein S4 [Chlorokybus atmophyticus] gi|126507725|gb|ABO15122.1| ribosomal protein S4 [Chlorokybus atmophyticus] Length = 267 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ---RRKSKPSYFGLQLRAKQK 57 M ++ K K RRI + +W K + + L Q R K S + +L A+QK Sbjct: 1 MVRKPILKFKTCRRIQKKIWDSRK--LTLKQENILLKAQVSPRGFEKQSNYSKELIARQK 58 Query: 58 MKKYYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 + YG++ F +FK+ R+R +S LE RLD ++ R K+ T+ ARQ + Sbjct: 59 LSAIYGNLKRDTFIKLFKKGRRARQVKLPDTFLSLLERRLDVVLLRLKYCSTLSEARQLI 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +H+ +LVN +VNI SY K GD+I + Sbjct: 119 SHKKILVNNETVNISSYLLKNGDLISI 145 >gi|212004221|gb|ACJ15419.1| Rps4 [Paragymnopteris marantae] Length = 187 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 6/170 (3%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD Sbjct: 20 QSASKKIXQFCVRLEAKQRLRLNYG-LTERQLLKYIRIARKTRGSTGQVPLQLLEMRLDN 78 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 ++++ TI AARQ V+HRH+LVN R V+I SYR D+I ++ + + + Sbjct: 79 VIFQLGMASTIPAARQLVSHRHILVNCRIVDIPSYRRNPKDIITIRNRPTSYNAA-KVES 137 Query: 159 LAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VP + +S++ N V ++ + V + LVVE++SR Sbjct: 138 FGRDEVPNHLTLSISKTNEPTGLVNHMANRESVNLDI--NELLVVEYHSR 185 >gi|42556472|gb|AAS19831.1| small ribosomal protein 4 [Odontoschisma sp. He-Nygren 702] Length = 191 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 8 PGLTGKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQSSKYVRIARKAK 66 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L LE RLD V+R PTI ARQ VNHRH+ +N ++I SY + GD+I Sbjct: 67 GSTGQVLPQLLEMRLDNTVFRLGMAPTIPGARQLVNHRHISINNDIIDIPSYDREPGDII 126 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + + L ++ +P +++ + + + +I + +LK + Sbjct: 127 TIKDKQKSRSIITKNINLFQKSKIPSHLTFDLTQLQGSVNQIVNREWVNLK-------IN 179 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 180 ELLVVEYYSR 189 >gi|50261300|ref|YP_052908.1| ribosomal protein S4 [Saprolegnia ferax] gi|48237613|gb|AAT40662.1| ribosomal protein S4 [Saprolegnia ferax] Length = 266 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 26/185 (14%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK--EADRSRGDTSHNLISFLESRL 96 +R + K + +L AKQ+ K +YG I E + +++F + + + H I LESRL Sbjct: 86 KRPEKKQKLYKERLFAKQQFKNFYGCIPEYQLKNLFNYLKNRNNNNNIIHKFIIVLESRL 145 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK------------ 144 D I++R+K TIF A+Q +NH + VN + + +Y K GD+I + Sbjct: 146 DMIIFRSKIAKTIFEAKQIINHGKIKVNNKIITSSNYILKRGDIITLNNFKILKKFYYLK 205 Query: 145 -----QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNL 199 QKS +L + +++ YI N+ + F+R P K++ YP + L Sbjct: 206 KKKNFQKSYELIKTVRKNKV------NYIQFNNKYNICIFLRQP-LFKEIKYPFDLDLKL 258 Query: 200 VVEFY 204 V EF+ Sbjct: 259 VDEFF 263 >gi|116335038|ref|YP_802533.1| ribosomal protein S4 [Candidatus Carsonella ruddii PV] gi|122940454|sp|Q05FK4|RS4_CARRP RecName: Full=30S ribosomal protein S4 gi|116235319|dbj|BAF35167.1| ribosomal protein S4 [Candidatus Carsonella ruddii PV] Length = 197 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 6/149 (4%) Query: 1 MSKRESSKHKIDRRIGENL--WGRPKSPVNTRS-YGPGLHGQRRKSKPSYFGLQLRAKQK 57 M+K++S K RR GENL + K +RS PG +G K K S FGL LR KQK Sbjct: 1 MTKKKSKNIKFCRREGENLEFFSEKKYLEKSRSNLTPGENGTE-KGKVSDFGLILRTKQK 59 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K+YY I EK+F+ I+ ++ + +LI+FLE RLD ++YR F + +RQ + Sbjct: 60 IKRYYC-IFEKEFKKIYFIIKKNFFNNI-DLINFLERRLDNVIYRFNFSISRKESRQLII 117 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 H +V VN I SY GDVI + +K Sbjct: 118 HGNVFVNYFKNKIPSYLLSPGDVITINKK 146 >gi|170516239|gb|ACB15121.1| small ribosomal protein 4 [Austrotaxus spicata] Length = 199 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 9/191 (4%) Query: 19 LWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEAD 78 L G K N + P + R KPS + ++L+ KQK+ +Y +E++ A Sbjct: 11 LLGLSKKSPNIKK--PRVKKHYRAPKPSKYPIRLKKKQKVGFHYK-FTERQLLQCSHIAR 67 Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 RS G L+ LE LD I+++ TI AR+ NHR +L+N R V+I SY CK Sbjct: 68 RSEGYIVEVLLQLLEINLDNIIFQLGMASTIPGARKLFNHRDILLNNRIVDIPSYHCKPQ 127 Query: 139 DVIEVKQKSKQLASVLEASQLAERD---VPEYISVNHDNMVATFVRIPSSLKDVPYPVI- 194 D+I +K + + + + LA+RD VP +++ + + ++ + + D + + Sbjct: 128 DLISIKDQQRSRNIINKNIDLAKRDKMRVPNLLNLKKEK--SQYIELVKKIIDSKWISLK 185 Query: 195 MQPNLVVEFYS 205 + LV+E+YS Sbjct: 186 INELLVIEYYS 196 >gi|77862529|gb|ABB04537.1| small ribosomal protein 4 [Exormotheca pustulosa] Length = 201 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 9/166 (5%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG ++E++ + A +++G T L+ LE RLD I++R Sbjct: 40 KVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRL 98 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAER 162 PTI ARQ VNHRH+L+N VNI SY CK DVI +K K + + + + ++ Sbjct: 99 GMAPTIPGARQLVNHRHILINNNIVNIPSYTCKPKDVITIKNGPKSQSIITKNLNSFQKQ 158 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 +P +++ + + + + + D + ++++ N LVVE+YSR Sbjct: 159 KIPNHLTFD----LMQVKGLVNEIIDREW-ILLKINELLVVEYYSR 199 >gi|259503648|ref|ZP_05746550.1| 30S ribosomal protein S4 [Lactobacillus antri DSM 16041] gi|259168367|gb|EEW52862.1| 30S ribosomal protein S4 [Lactobacillus antri DSM 16041] Length = 142 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 6/146 (4%) Query: 62 YGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH H Sbjct: 2 YG-MTERQFANLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHGH 60 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY VI V++KSK L +++ + A P Y+ + D + Sbjct: 61 ITVDGKRVDIPSYEVDVNQVIAVREKSKNL-DIIKNAVDAVVSRPSYVDFDADKLEGKLN 119 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ +D+ + L+VEFY++ Sbjct: 120 RIPAR-EDMDADI--DEALIVEFYNK 142 >gi|283549382|dbj|BAI66353.1| small ribosomal protein 4 [Metacalypogeia cordifolia] Length = 188 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 15/133 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + K K SY + ++L KQK++ +YG ++E++ + A + + Sbjct: 12 PGLTSKTLKPKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKVK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY + GD+I Sbjct: 71 GSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNREPGDII 130 Query: 142 EV--KQKSKQLAS 152 V KQKS+ + S Sbjct: 131 TVRNKQKSQSIIS 143 >gi|38638300|ref|NP_943664.1| ribosomal protein S4 [Chara vulgaris] gi|32966614|gb|AAP92197.1| ribosomal protein S4 [Chara vulgaris] Length = 189 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKS-KPSYFGLQLRAKQKMKKYYGDI 65 SK K R+I EN+W K T+ L R+K+ K F +L+A +K+ +YG++ Sbjct: 4 SKFKTCRQILENVWQTKKL---TQKQQKILSKARKKTNKAGEFSQKLQAIKKLSIFYGNL 60 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 KK + + D +L+ +E RLD ++ R F TIF ARQ ++H+ + VN Sbjct: 61 PVKKV----AKKTYTYLDKQKSLLLLMEKRLDILLVRMNFCSTIFTARQLISHKKICVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 + + S++ GD+I ++Q K ++ P ++ VN+ ++A + P Sbjct: 117 QIILRPSFQVSSGDLISIQQNCKSTIKQNIRYNRIFKNKPSHLEVNYQTLMAVLLYEPQQ 176 Query: 186 LKDVPYPV 193 ++ PY + Sbjct: 177 IQ-FPYHI 183 >gi|188012811|gb|ACD45544.1| ribosomal protein S4 [Oxymitra incrassata] Length = 195 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 21/188 (11%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL + KSK Y + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTNKTLKSKSGYINQSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G L+ LE RLD I++R PTI A Q VNHRH+L+N ++NI SY CK DVI Sbjct: 71 GSXGQVLLQLLEMRLDNIIFRLGMAPTIPGAXQLVNHRHILINNNTINIPSYNCKPKDVI 130 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN-- 198 +K++ K + + + + ++ +P +++ + + + S + D + V ++ N Sbjct: 131 TIKERPKSQSIIAKNLNSFQKQKIPNHLTFD----LMQVKGLVSQIIDREW-VYLKINEL 185 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 186 LVVEYYSR 193 >gi|291533602|emb|CBL06715.1| Ribosomal protein S4 and related proteins [Megamonas hypermegale ART12/1] Length = 125 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 4/126 (3%) Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T NL+ LE R+D +V+R T ARQ V+H H+ VNG+ ++I S K GDVI Sbjct: 3 GVTGENLLGLLERRIDNVVFRLGLASTRRQARQLVSHGHITVNGKRLDIPSALIKVGDVI 62 Query: 142 EVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLV 200 VK+KS+ A E A +VP +++ + N+ + R P+ ++ PV Q + Sbjct: 63 GVKEKSRGTALFKEIAESKNALNVPAWLTADIQNLSGSVTRFPNR-DEIDIPVDEQA--I 119 Query: 201 VEFYSR 206 VE YSR Sbjct: 120 VELYSR 125 >gi|45271070|gb|AAS56923.1| ribosomal protein small subunit 4 [Bolbitis heteroclita] Length = 191 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 12/168 (7%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L AKQ+++ YG ++E++ + A ++RG T + LE RLD +++ Sbjct: 29 KISQFCVRLEAKQRLRFNYG-LTERQLLKYVRIARKARGSTGQVPLQLLEMRLDNVIFHL 87 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 TI AARQ V+HRH+LVN R V+I SYR K D+ + + + + + Sbjct: 88 GMASTIPAARQLVSHRHILVNNRIVDIPSYRRKPRDITTTRNRPTSY-NAPKGKFPGGDN 146 Query: 164 VPEYISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 VP++++V+ D + RI + V + N LVVE+YSR Sbjct: 147 VPDHLAVSLSEGDRLTGLVNRIANR-----ESVNLNINELLVVEYYSR 189 >gi|42556422|gb|AAS19806.1| small ribosomal protein 4 [Herbertus dicranus] Length = 137 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 13/136 (9%) Query: 77 ADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY C+ Sbjct: 7 ARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIPSYNCE 66 Query: 137 EGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVN----HDNMVATFVRIPSSLKDVP 190 GD+I +K K K + + + L + + +P +++ + H ++ T R +LK Sbjct: 67 PGDIITIKNKQKSQSIITKNISLFQKLKKIPSHLTFDSIKLHGSINQTINRESINLK--- 123 Query: 191 YPVIMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 124 ----INELLVVEYYSR 135 >gi|29422381|gb|AAO84586.1| small ribosomal protein 4 [Conostomum pentastichum] Length = 146 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 2 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQXVNHRH 60 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVK 144 +LVN R V+I SYR K D I +K Sbjct: 61 ILVNDRIVDIPSYRXKPQDFITIK 84 >gi|119898662|ref|YP_933875.1| partiell 30S ribosomal protein S4, truncated [Azoarcus sp. BH72] gi|152060921|sp|A1K833|RS4L_AZOSB RecName: Full=Ribosomal protein S4-like protein gi|119671075|emb|CAL94988.1| partiell 30S ribosomal protein S4, truncated [Azoarcus sp. BH72] Length = 115 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 2/109 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 MS+ + KI R +G +L G + + R+ PG HG R+ ++ S FGLQL KQK++ Sbjct: 1 MSRYTGPRLKIMRALGVDLPGLGRKSMQERNQPPGQHGARKVAARKSEFGLQLMEKQKLR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 YG ++E++ R + +A R +G T ++ LE RLD +V+RA F PT Sbjct: 61 YNYG-VTERQLRRVVLDAKRQKGVTGGKIVELLERRLDNLVFRAGFAPT 108 >gi|253807610|gb|ACT36188.1| ribosomal protein S4 [Helicosporidium sp. ex Simulium jonesi] Length = 342 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 59/100 (59%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F +L QK+K +YG+IS K+ ++ ++A G N S +ESRLD I+YR+ F Sbjct: 50 FKNKLDCLQKLKIFYGNISTKQLLTLIRKAQNLPGFFDKNFFSLIESRLDVILYRSNFAK 109 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 +I+ ARQ H+ +L+N + + + S K GDV+ V + S Sbjct: 110 SIYHARQLCYHKKILLNSKFITVPSTLLKPGDVLVVHENS 149 >gi|328775223|gb|AEB40007.1| ribosomal protein S4 [Funaria hygrometrica] Length = 195 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 11/193 (5%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 +S+ K R+I EN+W K ++ L + K K S F +L+ QK+ +YG + Sbjct: 3 ASRFKTCRQISENVWQTKKLTQKQKAIILKLRKKTNK-KQSDFSKELQTIQKLSLFYGKL 61 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 KK + + ++ D ++L+ +E RLD I+ R F TIF ARQ ++H+ + VN Sbjct: 62 PIKKMQ---RSKTQTYLDKKNSLLFDIERRLDVILVRLNFCLTIFQARQLISHKKICVNY 118 Query: 126 RSVNIGSYRCKEGDVIEVKQK-----SKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNI ++ GD+I ++ ++ +++++ R P ++ VN+ + A + Sbjct: 119 KMVNIPGFQLSNGDLISIQDNFLYFIRSKIRQNFQSNRIW-RIKPTHLEVNYKTLKAVVL 177 Query: 181 RIPSSLKDVPYPV 193 P ++ PY + Sbjct: 178 YEPQQIQ-FPYSI 189 >gi|91208849|ref|YP_539010.1| Ribosomal protein S4 [Physcomitrella patens] gi|90991389|dbj|BAE93081.1| ribosomal protein S4 [Physcomitrella patens] Length = 195 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 11/193 (5%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 +S+ K R+I EN+W K ++ L + K K S F +L+ QK+ +YG + Sbjct: 3 ASRFKTCRQISENVWQTKKLTQKQKAIILKLRKKTNK-KQSDFSKELQTIQKLSLFYGKL 61 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 KK + + ++ D ++L+ +E RLD I+ R F TIF ARQ ++H+ + VN Sbjct: 62 PIKKMQ---RSKTQTYLDKKNSLLFDIERRLDVILVRLNFCLTIFQARQLISHKKICVNY 118 Query: 126 RSVNIGSYRCKEGDVIEVKQK-----SKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNI ++ GD+I ++ ++ +++++ R P ++ VN+ + A + Sbjct: 119 KMVNIPGFQLSNGDLISIQDNFIYFIRSKIRQNFQSNRIW-RIKPTHLEVNYKTLKAVVL 177 Query: 181 RIPSSLKDVPYPV 193 P ++ PY + Sbjct: 178 YEPQQIQ-FPYSI 189 >gi|307828442|gb|ADN95017.1| small ribosomal protein 4 [Fossombronia pusilla] Length = 189 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ YG + + + + A +++G T L+ E LB I+ R Sbjct: 28 KMSQYRIRLEEKQKLRXXYGLTXXQXLKYV-RVARKAKGSTGQILLQLXEMXLBXIIXRL 86 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER- 162 PTI RQ V H + V+ +VNI SY CK GDVI V+ + K + + ++ L ++ Sbjct: 87 GXAPTIXXXRQLVXHXXIXVDDDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKA 146 Query: 163 DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +++++ + + I ++ + + LVVE+YSR Sbjct: 147 KTPNHLTLDSTRLRGS---INQTIDRDWINLKINELLVVEYYSR 187 >gi|37992521|gb|AAR06439.1| small ribosomal protein 4 [Floribundaria sparsa var. pilifer] Length = 170 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 1/105 (0%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S F ++L KQK + +YG I++++ + + A +++G T + E R D +++R Sbjct: 9 KISQFRIRLEEKQKXRXHYG-ITDRQXLNYVRIARKAKGSTGEVSLQLPEMRSDNVIFRL 67 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 PTI ARQ VNHRH+LVN V+I SYR K D I +K + K Sbjct: 68 GMAPTIPGARQLVNHRHILVNDCMVDIPSYRXKPQDFITIKNQRK 112 >gi|226323041|ref|ZP_03798559.1| hypothetical protein COPCOM_00813 [Coprococcus comes ATCC 27758] gi|225208608|gb|EEG90962.1| hypothetical protein COPCOM_00813 [Coprococcus comes ATCC 27758] Length = 90 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/72 (51%), Positives = 46/72 (63%) Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T NL+ LESRLD +V+R F T ARQ V+H+ VLVNG+ VNI SY K GDVI Sbjct: 3 GMTGENLMVLLESRLDNVVFRLGFARTRREARQIVDHKQVLVNGKQVNIPSYLIKAGDVI 62 Query: 142 EVKQKSKQLASV 153 E+K+ K + Sbjct: 63 EIKEGKKIFTEI 74 >gi|59803318|gb|AAX07767.1| Rps4 [Symphyogyna brongniartii] Length = 153 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 5/153 (3%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ Sbjct: 3 KQKXXFHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTISGARQ 61 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 VNHRH+++N +++I SY CK DVI ++ + + + + + S ER +P +++ + Sbjct: 62 LVNHRHIIINDDTIDIPSYNCKPQDVITIRDRRESQSVITQNISLFRERRIPNHLTFDST 121 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +I + + + LVVE+YSR Sbjct: 122 RFCGSVNQI---IDREWIGLKINELLVVEYYSR 151 >gi|307579486|gb|ADN63455.1| 30S ribosomal protein S4 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 115 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 5/118 (4%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 LE+RLD ++YR F T AARQ V+HR VLVNG+ VN+ SY K GDV+ + Q++++ Sbjct: 1 MLETRLDNVIYRMGFAVTRPAARQLVSHRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKY 60 Query: 151 ASVLEASQLAER--DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V E+ + ++ +I V+ + F +P D+P + L+VE YS+ Sbjct: 61 LCVQESLTIKDQHGSAFSWIEVDSEKFSGVFKALPDR-ADLPSDI--NEALIVELYSK 115 >gi|51458136|gb|AAU03417.1| ribosomal protein small subunit 4 [Asplenium trichomanes subsp. trichomanes] gi|51458138|gb|AAU03418.1| ribosomal protein small subunit 4 [Asplenium trichomanes subsp. inexpectans] Length = 169 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 19/137 (13%) Query: 79 RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 R+RG T + LE RLD +++ TI AARQ VNHRH+LVN V+I SYRCK Sbjct: 41 RTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPK 100 Query: 139 DVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD---------NMVATFVRIPSSLKDV 189 D+I V+ + ++ S + ++ P++++V+ N VA I ++ ++ Sbjct: 101 DLITVRNRPTSCNALRNKSLVGDK-TPDHLTVSLSEGDRPTGLVNRVANRESINLNINEL 159 Query: 190 PYPVIMQPNLVVEFYSR 206 LVVE+YSR Sbjct: 160 ---------LVVEYYSR 167 >gi|197131012|gb|ACH47057.1| ribosomal protein S4 [Isoetes engelmannii] gi|205277648|gb|ACI02097.1| ribosomal protein S4 [Isoetes engelmannii] Length = 254 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RRI EN+W K + L +R++ K SYF +QLR Q++ +YG Sbjct: 21 KTCRRIEENVWVWQKLTEKQKHIISEL--RRKREKQSYFSVQLRTIQRLSLFYG------ 72 Query: 70 FRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +S+ ++A + + + +L+ +LE RLD I+ F TI ARQ ++H+ + VN +V Sbjct: 73 -KSLPRKAKKHTYLNKRKSLLYYLEKRLDVILVCTHFCSTICGARQLISHKKICVNSETV 131 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLE 155 N +R GD+I + +++ L + E Sbjct: 132 NTHGFRVSNGDLISIVEENFFLFDIRE 158 >gi|209916097|gb|ACI95892.1| ribosomal protein S4 [Isoetes engelmannii] gi|241912117|gb|ACS71780.1| ribosomal protein S4 [Isoetes engelmannii] Length = 254 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RRI EN+W K + L +R++ K SYF +QLR Q++ +YG Sbjct: 21 KTCRRIEENVWVWQKLTEKQKHIISEL--RRKREKQSYFSVQLRTIQRLSLFYG------ 72 Query: 70 FRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +S+ ++A + + + +L+ +LE RLD I+ F TI ARQ ++H+ + VN +V Sbjct: 73 -KSLPRKAKKHTYLNKRKSLLYYLEKRLDVILVCTHFCSTICGARQLISHKKICVNSETV 131 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLE 155 N +R GD+I + +++ L + E Sbjct: 132 NTHGFRVSNGDLISIVEENFFLFDIRE 158 >gi|42794687|gb|AAS45740.1| Rps4 [Satyria panurensis] Length = 211 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 10/154 (6%) Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +++ ++E++ + + +G L+ L RLD ++R TI ARQ VNHR Sbjct: 57 RFHXGLTERQLLKYVRIPGKPKGSPGQVLLXLLXMRLDKXLFRLGMASTIPGARQLVNHR 116 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEYISVNH 172 HVLVNGR ++I SYRCK D+I ++KS+ L L + + + VP ++++N Sbjct: 117 HVLVNGRIIDIPSYRCKPRDIITAREKSRALIQNSFQNLFDLPSRKRKRKRVPYHLTLNR 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I ++ K V + + LVVE+YSR Sbjct: 177 GQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|314908364|gb|ADT62129.1| ribosomal protein S4 [Isoetes engelmannii] Length = 254 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RRI EN+W K + L +R++ K SYF +QLR Q++ +YG Sbjct: 21 KTCRRIEENVWVWQKLTEKQKHIISEL--RRKREKQSYFSVQLRTIQRLSLFYG------ 72 Query: 70 FRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +S+ ++A + + + +L+ +LE RLD I+ F TI ARQ ++H+ + VN +V Sbjct: 73 -KSLPRKAKKHTYLNKRKSLLYYLEKRLDVILVCTHFCSTICGARQLISHKKICVNFETV 131 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLE 155 N +R GD+I + +++ L + E Sbjct: 132 NTHGFRVSNGDLISIVEENFFLFDIRE 158 >gi|49182772|gb|AAT57848.1| small ribosomal protein [Odontoschisma denudatum] Length = 195 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PGL G+ KSK SY + ++L KQK++ +YG ++E++ + A +++ Sbjct: 12 PGLTGKTLKSKSSYIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQSSKYVRIARKAK 70 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T L E RLD + R PTI ARQ VNHRH+ +N ++I SY + GD+I Sbjct: 71 GSTGQVLPQLPEMRLDNTILRLGMAPTIPGARQLVNHRHISINNDIIDIPSYDREPGDII 130 Query: 142 EVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS----SLKDVPYPVIMQ 196 +K K K + + L ++ +P +++ + + + ++ + +LK + Sbjct: 131 TIKDKQKSRSIITRNINLFQKSKIPSHLTFDLTQLQGSVNQMVNREWVNLK-------IN 183 Query: 197 PNLVVEFYSR 206 LVVE+YSR Sbjct: 184 ELLVVEYYSR 193 >gi|51458163|gb|AAU03430.1| ribosomal protein small subunit 4 [Asplenium fontanum] Length = 167 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 22/132 (16%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 Q K S F ++L AKQ+ R+RG T + LE RLD Sbjct: 13 QSTSRKISQFCVRLEAKQR---------------------RTRGSTGQVPLQLLEMRLDN 51 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 +++ TI AARQ VNHRH+LVN V+I SYRCK D I V+ + ++ S Sbjct: 52 VLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSYRCKPKDFITVRNRPTSCNALRNKSL 111 Query: 159 LAERDVPEYISV 170 + ++ P++++V Sbjct: 112 VGDK-TPDHLTV 122 >gi|42794730|gb|AAS45760.1| Rps4 [Thibaudia tomentosa] Length = 211 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ +YG ++E+ + + G T L+ LE R D I++R TI A Q Sbjct: 53 KQKLRFHYG-LTERPLLKYVRFPGKXXGSTGQVLLQLLEMRXDNILFRWGRAXTIPGAXQ 111 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-------LEASQLAERDVPEY 167 V RHVLVNGR +I SYRC D+ ++KS+ L L + + + VP + Sbjct: 112 LVTXRHVLVNGRLKDIPSYRCNPRDIXTAREKSRALIQNSFQNLFDLPSRKRKRKRVPYH 171 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++N +I ++ K V + + LVVE+YSR Sbjct: 172 LTLNRGQYKGLVKQIINT-KWVGLKI--KELLVVEYYSR 207 >gi|311223002|gb|ADP76583.1| small ribosomal protein 4 [Noteroclada confluens] Length = 122 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 11/129 (8%) Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T J+ LE RLD ++R TI ARQ VN RH+L+N V+I SY C+ GDVI Sbjct: 1 GSTGEXJLQLLEMRLDNTIFRLGMSSTIPGARQLVNXRHILINDNMVDIPSYNCEPGDVI 60 Query: 142 EVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDV----PYPVIMQP 197 VK + + + + + + +P ++++N ++ S+ V + + Sbjct: 61 TVKNRRESQSIIAKNMEFQRPXIPNHLTLNS-------IQFQGSVNQVINRECJDLKINE 113 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 114 LLVVEYYSR 122 >gi|292559409|gb|ADE32410.1| ribosomal protein S4 [Streptococcus suis GZ1] Length = 115 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 3/109 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPT 108 YG + EK+FR++F +A + +G N + LE RLD +VYR T Sbjct: 60 SYG-LGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRLGLATT 107 >gi|60202594|gb|AAX14686.1| 30S ribosomal protein S4 [Phaeodactylum tricornutum] Length = 140 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 8/143 (5%) Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+ KEA R +G T L+ LE RLDT+ + F ++ ARQ VNH H+ +N + Sbjct: 2 EKQLFRYVKEARRRQGVTGLILLQLLEMRLDTLCFTLGFAKSLAQARQLVNHGHITINKK 61 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASV---LEASQLAERDVPEYISVNHDNMVATFVRIP 183 V+I S++C+ D+I +K+KS V ++ +Q+ R++P ++ + + A + Sbjct: 62 VVSIPSFQCRLNDIISIKEKSSSKTLVETNIKNNQV--REIPTHLRFDTVKLGAIVLDYC 119 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 DV + LV+E YSR Sbjct: 120 DR-NDVSLQ--LDELLVIEHYSR 139 >gi|294663004|ref|YP_003579825.1| ribosomal protein S4 [Dictyostelium citrinum] gi|162416159|sp|P0C5Y3|RT04_DICCI RecName: Full=Ribosomal protein S4, mitochondrial gi|187479911|gb|ACD12712.1| ribosomal protein S4 [Dictyostelium citrinum] Length = 325 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 72/123 (58%), Gaps = 7/123 (5%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K+Y ++ K+F+ ++K + +G+ +I LE R+D I+ R+ FV +I+ ARQ +N Sbjct: 114 FRKFYINLKLKQFKRLYK---KYKGNEK-IIIQQLEKRIDMILLRSGFVRSIYEARQLIN 169 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVA 177 H+H+LVNG I SY GD+I +K+ S + + +L + +P+ + + N++ Sbjct: 170 HKHILVNGNIARIPSYTLNVGDIISIKEGSHKQNLI---HRLKKILLPKVVPEHKKNLIH 226 Query: 178 TFV 180 FV Sbjct: 227 RFV 229 >gi|226329505|ref|ZP_03805023.1| hypothetical protein PROPEN_03414 [Proteus penneri ATCC 35198] gi|225202691|gb|EEG85045.1| hypothetical protein PROPEN_03414 [Proteus penneri ATCC 35198] Length = 102 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 4/103 (3%) Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RD 163 F T ARQ V+H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LAE R+ Sbjct: 3 FGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQRE 62 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P ++ V+ M F RIP D+ + +L+VE YS+ Sbjct: 63 KPTWLEVDAAKMEGVFKRIPER-TDLSADI--NEHLIVELYSK 102 >gi|299830443|ref|YP_003734814.1| ribosomal protein S4 [Pythium ultimum] gi|299830496|ref|YP_003734867.1| ribosomal protein S4 [Pythium ultimum] gi|269810820|gb|ACZ43849.1| ribosomal protein S4 [Pythium ultimum] gi|269810873|gb|ACZ43902.1| ribosomal protein S4 [Pythium ultimum] gi|269812133|gb|ACZ44431.1| ribosomal protein S4 [Pythium ultimum] gi|269812186|gb|ACZ44484.1| ribosomal protein S4 [Pythium ultimum] Length = 153 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 2/99 (2%) Query: 47 YFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR--SRGDTSHNLISFLESRLDTIVYRAK 104 +F +L KQ+ K +YG I E + +++F ++ ++ +T N I LESRLD + R K Sbjct: 53 FFQKRLFEKQQFKNFYGCIPEYQLKNLFSNLNKKDNKINTFKNFILLLESRLDINIVRLK 112 Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 T+F ++Q +NH+ V +N + V+ ++ K+GDVI + Sbjct: 113 LAKTVFQSKQLINHKKVKINDKIVSKPNFLLKKGDVISI 151 >gi|84508556|ref|YP_448603.1| ribosomal protein S4 [Fucus vesiculosus] gi|39653279|gb|AAR29298.1| ribosomal protein S4 [Fucus vesiculosus] Length = 271 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+ KKF+ K +S+G +S LI LE RLD +YR F +I +RQ + Sbjct: 100 IRRFYGDLGHKKFKKSCKLLSKSKG-SSQKLIGNLEKRLDVTLYRLGFFHSILYSRQAIL 158 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEV 143 H ++VNG+ +N G++ ++GD +E Sbjct: 159 HNKIIVNGKFINNGNFMLRKGDFVEF 184 >gi|238021615|ref|ZP_04602041.1| hypothetical protein GCWU000324_01515 [Kingella oralis ATCC 51147] gi|237866229|gb|EEP67271.1| hypothetical protein GCWU000324_01515 [Kingella oralis ATCC 51147] Length = 102 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 4/103 (3%) Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-D 163 F T ARQ V+H+ ++VNG+ VNI S++ K GDV+ +++K+K+ + EA LA + Sbjct: 3 FASTRAEARQLVSHKAIMVNGQVVNIPSFQVKAGDVVAIREKAKKQVRIQEAMGLATQIG 62 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P ++SV+ + TF +P + Y I + LVVEFYS+ Sbjct: 63 LPSWVSVDATKLEGTFKNVPDRAE--LYSDINE-QLVVEFYSK 102 >gi|145932374|ref|YP_001165423.1| ribosomal protein S4 [Phytophthora sojae] gi|110169617|gb|ABG54083.1| ribosomal protein S4 [Phytophthora sojae] Length = 153 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 10/112 (8%) Query: 40 RRKSKPS----YFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL----ISF 91 R++ KP +F +L KQ+ + +YG I E + +++FK+ S+ D N+ + Sbjct: 42 RKEIKPEKRKKFFQKRLFEKQQFRNFYGCIHEYQLKNLFKKL--SKKDNKINIFKKFVIL 99 Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LESRLD + R K V TIF A+Q +NH+ + VN + +N ++ ++GD+I + Sbjct: 100 LESRLDINLVRLKLVKTIFQAKQLINHKKIKVNNKIINKPNFLLQKGDIIYI 151 >gi|16930560|gb|AAL31958.1| ribosomal protein small subunit 4 [Cyclosorus interruptus] Length = 120 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 + LE RLD +++ TI AARQ VNHRH+LVN V+I SYRCK D+I ++ + Sbjct: 2 LQLLEMRLDNVIFNLGMASTIPAARQLVNHRHILVNNHIVDIPSYRCKPRDIITIRNRPT 61 Query: 149 QLASVLEASQLAERDVPEY--ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + L + P++ IS+ N A V ++ + V + LVVE+YSR Sbjct: 62 S-HNALGGESSVGVETPDHLTISLMEGNRPAGLVNRVANRESVNLSI--NELLVVEYYSR 118 >gi|9695411|ref|NP_037633.1| ribosomal protein S4 [Phytophthora infestans] gi|6692663|gb|AAF24806.1|U17009_39 ribosomal protein S4 [Phytophthora infestans] gi|58012169|gb|AAW62577.1| ribosomal protein S4 [Phytophthora infestans] gi|58202008|gb|AAW67063.1| ribosomal protein S4 [Phytophthora infestans] gi|58202055|gb|AAW67109.1| ribosomal protein S4 [Phytophthora infestans] Length = 153 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 10/112 (8%) Query: 40 RRKSKPS----YFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL----ISF 91 R++ KP +F +L KQ+ + +YG I E + ++IF++ S+ D N+ I Sbjct: 42 RKEIKPEKRKKFFQKRLFEKQQFRNFYGCIHEYQLKNIFRKL--SKKDNKINIFKKFIIL 99 Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LESRLD + R K V TIF A+Q +NH+ + VN + ++ ++ ++GD+I + Sbjct: 100 LESRLDINLVRLKLVKTIFKAKQLINHKKIKVNNKIISKPNFILQKGDIIHI 151 >gi|301500949|ref|YP_003795414.1| ribosomal protein S4 [Alveolata sp. CCMP3155] gi|300069495|gb|ADJ66602.1| ribosomal protein S4 [Chromerida sp. RM11] Length = 207 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 19/166 (11%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ+++ Y+ +++ + + E + G + L+ L RLD+ +++ F +I ++RQ Sbjct: 46 KQRLR-YHHSLTQSQVKRYVAETRKYPGPSGLALLCELAMRLDSFLFQVGFAVSIRSSRQ 104 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEV---------------KQKSKQLASVLEASQL 159 + H HV VNGR V++ YRCK+GD+I + ++K+ A+ S Sbjct: 105 LIRHGHVFVNGRVVSLPGYRCKQGDLICIAPRVESRRLVSRHVLATRTKRAANTFNKSFS 164 Query: 160 AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 A V EY V N+ +R ++K + + P LV+E ++ Sbjct: 165 ALTPVSEYAKVCPRNLKILVLR---NIKPRELLLKVDPMLVLESFA 207 >gi|121730284|ref|ZP_01682658.1| topoisomerase IV subunit A [Vibrio cholerae V52] gi|121627964|gb|EAX60527.1| topoisomerase IV subunit A [Vibrio cholerae V52] Length = 102 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 4/103 (3%) Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RD 163 F T ARQ V+H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++AE R+ Sbjct: 3 FGATRAEARQLVSHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQRE 62 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +I V+ + M TF R+P D+ + Q L+VE YS+ Sbjct: 63 KPTWIEVDVNTMEGTFKRMPER-SDLSADINEQ--LIVELYSK 102 >gi|7525008|ref|NP_050106.1| ribosomal protein S4 [Dictyostelium discoideum] gi|74849891|sp|Q9XPI8|RT04_DICDI RecName: Full=Ribosomal protein S4, mitochondrial gi|4958911|dbj|BAA78088.1| ribosomal protein S4 [Dictyostelium discoideum] Length = 300 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 40/183 (21%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K+Y ++ K+F+ ++K + +G+ +I LE R+D ++ R+ FV +++ ARQ +N Sbjct: 114 FRKFYLNLKLKQFKLLYK---KYKGN-EKVIIQQLEKRVDMVLLRSGFVRSLYEARQIIN 169 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ----------LASVLEASQLAERDV--- 164 H+H+LVNG+ ++ Y GD+I K+ S + L S + R+ Sbjct: 170 HKHLLVNGKIASLPGYMINVGDIISFKEGSMKRKLLKRLKKGLISKKSRKRWTNRNFKFK 229 Query: 165 ----------------------PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 P Y+ ++H ++ + + P L + YP +QP ++ Sbjct: 230 RFQNYKRKRQKKKNKNKVRATGPNYLEISHSLLLISLIEEP-KLTAIKYPFTLQPEKNIK 288 Query: 203 FYS 205 F + Sbjct: 289 FIT 291 >gi|268053689|ref|YP_003289096.1| ribosomal protein S4 [Saccharina longipedalis] gi|262318309|dbj|BAI48630.1| ribosomal protein S4 [Saccharina longipedalis] Length = 265 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+S K F+++ K + + S LI LE RLD +YR F +I+++RQ + Sbjct: 94 IRRFYGDLSHKAFKNLCKPLV-ALKNPSQKLIGSLEGRLDISLYRLGFFHSIYSSRQAIL 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 H VLVNG+ + G + ++GD +E +Q Sbjct: 153 HSKVLVNGKKIGHGGFTLQKGDFVEFCPSHRQ 184 >gi|5442406|gb|AAD43332.1|AF155828_3 ribosomal protein S4 [Dictyostelium discoideum] Length = 283 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 40/183 (21%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K+Y ++ K+F+ ++K + +G+ +I LE R+D ++ R+ FV +++ ARQ +N Sbjct: 97 FRKFYLNLKLKQFKLLYK---KYKGN-EKVIIQQLEKRVDMVLLRSGFVRSLYEARQIIN 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ----------LASVLEASQLAERDV--- 164 H+H+LVNG+ ++ Y GD+I K+ S + L S + R+ Sbjct: 153 HKHLLVNGKIASLPGYMINVGDIISFKEGSMKRKLLKRLKKGLISKKSRKRWTNRNFKFK 212 Query: 165 ----------------------PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVE 202 P Y+ ++H ++ + + P L + YP +QP ++ Sbjct: 213 RFQNYKRKRQKKKNKNKVRATGPNYLEISHSLLLISLIEEP-KLTAIKYPFTLQPEKNIK 271 Query: 203 FYS 205 F + Sbjct: 272 FIT 274 >gi|224922583|emb|CAQ19274.1| ribosomal S4 protein [Lomariopsis sp. F042] Length = 100 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 5/101 (4%) Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ VNHRH+LVN V+I SYRCK D+I ++ +S + L + A +P++ Sbjct: 1 TIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITIRNRSTSY-NALRVTSPAGDKIPDH 59 Query: 168 --ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 IS++ DN A V ++ + V + LVVE+YSR Sbjct: 60 LTISLSEDNKPAGLVNCIANRESVNLNI--NELLVVEYYSR 98 >gi|11497481|ref|NP_042271.1| ribosomal protein S4 [Prototheca wickerhamii] gi|1173305|sp|P46743|RT04_PROWI RecName: Full=Ribosomal protein S4, mitochondrial gi|467872|gb|AAD12659.1| ribosomal protein S4 [Prototheca wickerhamii] Length = 511 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 51/101 (50%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 L +K+K +YG I K+ I +A G S N S +E RLD ++YR+ F TI A Sbjct: 160 LLCVKKLKMFYGFIPLKQLHKILVQAKAMPGYFSKNFFSLIEKRLDVVLYRSGFTKTIVA 219 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 ARQ H + VN + I S + GD+I K + L + Sbjct: 220 ARQACRHSQIYVNSKVCRIPSTILESGDIISYKNQLDSLKT 260 >gi|327195253|ref|YP_004339035.1| ribosomal protein S4 [Coccomyxa sp. C-169] gi|325070749|gb|ADY75477.1| ribosomal protein S4 [Coccomyxa sp. C-169] Length = 266 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 + K++ YG+++ ++ + + +RG S NL LESR+D + R F TI ARQ Sbjct: 3 RNKLRIMYGNLANREVDRLIERGLSTRGVLSDNLFRLLESRIDVFLCRIGFFATIPNARQ 62 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +++H +L+N + V S+ K GDV+ + Sbjct: 63 WIHHGKILINRKIVTTASHMLKPGDVVSI 91 >gi|268053533|ref|YP_003288892.1| ribosomal protein S4 [Saccharina japonica] gi|268053572|ref|YP_003288930.1| ribosomal protein S4 [Saccharina religiosa] gi|268053611|ref|YP_003288968.1| ribosomal protein S4 [Saccharina ochotensis] gi|268053650|ref|YP_003289045.1| ribosomal protein S4 [Saccharina diabolica] gi|262318153|dbj|BAI48478.1| ribosomal protein S4 [Saccharina japonica] gi|262318192|dbj|BAI48516.1| ribosomal protein S4 [Saccharina religiosa] gi|262318231|dbj|BAI48554.1| ribosomal protein S4 [Saccharina ochotensis] gi|262318270|dbj|BAI48592.1| ribosomal protein S4 [Saccharina diabolica] Length = 265 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+S K F+++ K + + S LI LE RLD +YR F +I+ +RQ + Sbjct: 94 IRRFYGDLSHKAFKNLCKPLV-ALKNPSQKLIGSLEGRLDISLYRLGFFHSIYYSRQAIL 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ 149 H VLVNG+ + G + ++GD +E +Q Sbjct: 153 HSKVLVNGKKIGHGGFTLQKGDFVEFCPSHRQ 184 >gi|187764107|ref|YP_001876556.1| ribosomal protein S4 [Dictyostelium fasciculatum] gi|160688815|gb|ABX45230.1| ribosomal protein S4 [Dictyostelium fasciculatum] Length = 276 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 6/128 (4%) Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +IS K+F+ +++ + + LE RLD+++ R++ V T++AAR F+ ++H Sbjct: 121 YYKNISIKQFKKLYR-ILKKKQQKLQKFWEILEGRLDSVLVRSQLVRTMYAARHFIKYKH 179 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-----PEYISVNHDNM 175 + VNG+ +Y K GD I +++K ++A+ ++ +L + + P Y+ + + Sbjct: 180 ISVNGKVKTRLNYLIKIGDFIGMRRKKMKVATKIKLFELVRKGLMIGIGPAYLETDFRLL 239 Query: 176 VATFVRIP 183 + T V P Sbjct: 240 LTTMVYKP 247 >gi|296399261|gb|ADH10436.1| ribosomal protein S4 [Selaginella moellendorffii] gi|296399281|gb|ADH10456.1| ribosomal protein S4 [Selaginella moellendorffii] Length = 193 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTR---SYGPGLHGQRRKS-KPSYFGLQLRAKQ 56 MS+ + KI RR G +SP TR + PG Q + K + ++ KQ Sbjct: 1 MSRHRGPRAKIVRRPG-------RSPGPTRKRPNKKPGYANQSTPTTKAPPYRIRSEEKQ 53 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 + + ++G ++ R + + A R++G T + LE+R D I+ R TI ARQ V Sbjct: 54 RSRFHHGPTEQQSLRYV-RLARRAKGSTGQVSLQSLETRSDNIIPRLGMASTIPGARQSV 112 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 H H N ++NI SYR + D I V+Q Sbjct: 113 THEHTPANDHAINIPSYRREPTDAIAVRQ 141 >gi|268164077|ref|YP_003288854.1| ribosomal protein S4 [Saccharina coriacea] gi|262318387|dbj|BAI48706.1| ribosomal protein S4 [Saccharina coriacea] Length = 265 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+S K F+++ K + + S LI LE RLD +YR F +I+ +RQ + Sbjct: 94 IRRFYGDLSHKAFKNLCKPLV-ALKNPSQKLIGSLEGRLDISLYRLGFFHSIYYSRQAIL 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIE 142 H VLVNG+ + G + ++GD +E Sbjct: 153 HSKVLVNGKKIGHGGFTLQKGDFVE 177 >gi|292559479|ref|YP_003540847.1| ribosomal protein S4 [Hartmannella vermiformis] gi|290775732|gb|ADD62231.1| ribosomal protein S4 [Hartmannella vermiformis] Length = 230 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 + Q +K +Y IS+++ K + S G N + +ESR+ TI+YR ++P I Sbjct: 77 SMQLVKLFYKGISQRRVYKFSKLSSASFGLWVDNFLLLIESRVSTILYRVNWIPNILFLN 136 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVI----EVKQKSKQLASVLEASQLAERDVPEYIS 169 QF+ H +L++ + ++ K +I ++ K + + + + + P YI Sbjct: 137 QFLAHGDILIDSKVPTTVNFMVKMFQLIRPLPSIQSKLRFNFHLRLINNMVYFNTPRYIF 196 Query: 170 VNHDNMVATFVRIPSSLKDVPYPVIM 195 +N M A R P SL D+ +PV++ Sbjct: 197 MNSKIMFACIFRNP-SLSDISFPVLL 221 >gi|15150718|ref|NP_150384.1| ribosomal protein S4 [Pylaiella littoralis] gi|15147724|emb|CAC50825.1| ribosomal protein S4 [Pylaiella littoralis] Length = 265 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+S K F+S+ + + + + + S +L+ LE RLD +YR F +I+ +RQ + Sbjct: 94 LRRFYGDLSHKSFKSLCQPSFKLK-NPSLDLLGTLEGRLDICLYRLGFFHSIYYSRQAIQ 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIE 142 H ++VNG+ + + K+GD +E Sbjct: 153 HNKIIVNGKKMGHSGFVLKKGDYVE 177 >gi|206587040|emb|CAQ17624.1| hypothetical 30s ribosomal protein s4 (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 668 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 11/102 (10%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 KQK+K+ YG + E++FR F EADR +G+T NL+ LESR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESR 98 >gi|316996026|dbj|BAD83538.2| ribosomal protein S4 [Nicotiana tabacum] Length = 349 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 17/127 (13%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ +YGD+ E R R TS+ I FL E+RLD I+ R F Sbjct: 57 IQLQTTRKLSLFYGDLP-------ITEMHRGRERTSY--IPFLLNLETRLDVILVRLHFC 107 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI-----EVKQKSKQLASVLEASQLAE 161 TI ARQ ++HR V VN VNI ++ GD+I +V+ + +++ L E Sbjct: 108 ETIPQARQLISHRRVCVNNGMVNITHFKLSHGDIISFQENDVRTRGEEIKRSFYIEILVE 167 Query: 162 RDVPEYI 168 + + +++ Sbjct: 168 KIIGKFL 174 >gi|289065161|ref|YP_003434213.1| ribosomal protein S4 [Chattonella marina] gi|288871873|dbj|BAI70560.1| ribosomal protein S4 [Chattonella marina] Length = 263 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 8/143 (5%) Query: 45 PSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAK 104 +Y+ L KQ++K +Y ++ K ++ K + N I+ E RLD +YR K Sbjct: 69 KNYYRQNLILKQQLKNFY-NLQNYKVKNFVKRELLEKD----NFINCFEKRLDVFLYRTK 123 Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV 164 F+ T+ RQ++N+ ++L+N + + SY+ K GD++E K + L S + Q + V Sbjct: 124 FLKTLLQIRQWINYNNILINRKKQSYISYQLKSGDLLEFKDQPTLLKSKINKQQ---KKV 180 Query: 165 PEYISVNHDNMVATFVRIPSSLK 187 Y+ +H +++I LK Sbjct: 181 NIYVKQHHLIKDLKYIKIVKKLK 203 >gi|7524703|ref|NP_042457.1| ribosomal protein S4 [Pinus thunbergii] gi|1173263|sp|P41638|RR4_PINTH RecName: Full=30S ribosomal protein S4, chloroplastic gi|1262697|dbj|BAA04412.1| ribosomal protein S4 [Pinus thunbergii] Length = 198 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 27/189 (14%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++L KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLD---TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 + I+ E RLD +I Y + ARQ VNH H+ VN V+I SY CK D Sbjct: 78 SRVRS-IAITEMRLDKSFSIGY-----GSTSGARQLVNHGHIRVNDHMVDIPSYPCKPQD 131 Query: 140 VIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQP 197 VI ++ + + A + + L +RD +P +++ H F+ + + D + + + Sbjct: 132 VITIRDQQRLRAIIKKNIDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKWINLKINE 187 Query: 198 NLVVEFYSR 206 LVVE+YSR Sbjct: 188 LLVVEYYSR 196 >gi|118577577|gb|ABL07154.1| small ribosomal protein 4 [Piper glabratum] Length = 101 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 4/100 (4%) Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPE 166 TI ARQ VNHRHVLVNGR V+I SYRCK D+I + + + V + A R ++P+ Sbjct: 3 TIPGARQLVNHRHVLVNGRIVDIPSYRCKPRDIITTRNEQRSKVLVQNSMDSASREELPK 62 Query: 167 YISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++++ +I S K V + LVVE+YSR Sbjct: 63 HLTLDSSQYKGVVNQIIDS-KGVGLKI--NELLVVEYYSR 99 >gi|84508596|ref|YP_448642.1| ribosomal protein S4 [Desmarestia viridis] gi|45925628|gb|AAS79029.1| ribosomal protein S4 [Desmarestia viridis] Length = 269 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD++ K F+ + S S L+ LE RLD +YR F +IF +RQ + Sbjct: 98 LRRFYGDLNHKAFKRLCHSVSSS-TTPSQKLLGILEGRLDISLYRLGFFHSIFYSRQAIL 156 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIE 142 H VLVNG + G + ++GD +E Sbjct: 157 HNKVLVNGEKIGHGGFILQKGDYVE 181 >gi|323435070|ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. maritima] gi|317905723|emb|CBJ14108.1| ribosomal protein S4 [Beta vulgaris subsp. maritima] gi|319439803|emb|CBJ17515.1| ribosomal protein S4 [Beta vulgaris subsp. maritima] Length = 315 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 8/105 (7%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 RK++ SY +QLR +K+ +YG++ I K R++ + + LE+RLD I+ Sbjct: 46 RKNRNSY--IQLRTTRKLSLFYGNLP------ITKMHRRTKRTSYIPFLLNLETRLDVIL 97 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 R F TI ARQ ++HR V VN VNI ++ GD+I ++ Sbjct: 98 VRLHFCETIPQARQLISHRKVCVNNGIVNISHFKVSHGDIISFQE 142 >gi|60117135|ref|YP_209598.1| ribosomal protein S4 [Polysphondylium pallidum] gi|51339699|gb|AAU00613.1| ribosomal protein S4 [Polysphondylium pallidum] Length = 268 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 73/137 (53%), Gaps = 14/137 (10%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 +K + +Y ++ K+ ++I+K+ R + + S +S +E RLD+I+ R+ T++AAR F Sbjct: 108 RKFRFHYKNLKLKQIKNIYKQVTR-KQNKSKLFMSIIERRLDSILVRSSLFQTMYAARHF 166 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV---------PE 166 + + H+ VNGR + +Y GD++ K+ + L+ ++ +R + P Sbjct: 167 IQYNHICVNGRIIKKLNYHVNIGDLVGFKKNKMR----LKIKKILKRLIRKHKFISISPA 222 Query: 167 YISVNHDNMVATFVRIP 183 Y+ ++ ++ T + P Sbjct: 223 YLETDYRLLLTTLIYTP 239 >gi|226348837|gb|ACO50741.1| ribosomal protein S4 [Micromonas pusilla CCMP1545] Length = 261 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 45 PSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAK 104 P+++G+ L + +K YG + F ++F +A ++ + + LE RLD I+YRA+ Sbjct: 54 PTFYGMTLL--RILKTVYGPSNTSTFVNLFSKAKKTSVPSLQAFLQLLEMRLDVILYRAR 111 Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 F + Q++ H V VNG+ V GDV+ + Sbjct: 112 FATSYLQLHQWIAHGKVCVNGQVVTTKGRLLSPGDVVSI 150 >gi|162279921|ref|NP_064046.2| ribosomal protein S4 [Beta vulgaris subsp. vulgaris] gi|87248052|gb|ABD36080.1| ribosomal protein S4 [Beta vulgaris subsp. vulgaris] gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1| ribosomal protein S4 [Beta vulgaris subsp. maritima] Length = 315 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 8/105 (7%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 RK++ SY +QLR +K+ +YG++ I K R++ + + LE+RLD I+ Sbjct: 46 RKNRNSY--IQLRTTRKLSLFYGNLP------ITKMHRRTKRTSYIPFLLNLETRLDVIL 97 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 R F TI ARQ ++HR V VN VNI ++ GD+I ++ Sbjct: 98 VRLHFCETIPQARQLISHRKVCVNNGIVNISHFKVSHGDIISFQE 142 >gi|255961340|ref|YP_003097522.1| ribosomal protein S4 [Selaginella moellendorffii] gi|255961359|ref|YP_003097541.1| ribosomal protein S4 [Selaginella moellendorffii] gi|254941512|gb|ACT89027.1| ribosomal protein S4 [Selaginella moellendorffii] gi|254941531|gb|ACT89046.1| ribosomal protein S4 [Selaginella moellendorffii] Length = 194 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 13/124 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PG +R KP Y + ++ KQ+ + ++G ++ R + + A R++ Sbjct: 19 PGPTRKRPNKKPGYANQSTPTTKAPPYRIRSEEKQRSRFHHGPTEQQSLRYV-RLARRAK 77 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE+R D I+ R TI ARQ V H H N ++NI SYR + D I Sbjct: 78 GSTGQVSLQSLETRSDNIIPRLGMASTIPGARQSVTHEHTPANDHAINIPSYRREPTDAI 137 Query: 142 EVKQ 145 V+Q Sbjct: 138 AVRQ 141 >gi|302824443|ref|XP_002993864.1| hypothetical protein SELMODRAFT_137695 [Selaginella moellendorffii] gi|302824531|ref|XP_002993908.1| hypothetical protein SELMODRAFT_137752 [Selaginella moellendorffii] gi|300138231|gb|EFJ05005.1| hypothetical protein SELMODRAFT_137695 [Selaginella moellendorffii] gi|300138275|gb|EFJ05049.1| hypothetical protein SELMODRAFT_137752 [Selaginella moellendorffii] Length = 204 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 13/124 (10%) Query: 34 PGLHGQRRKSKPSY------------FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR 81 PG +R KP Y + ++ KQ+ + ++G ++ R + + A R++ Sbjct: 9 PGPTRKRPNKKPGYANQSTPTTKAPPYRIRSEEKQRSRFHHGPTEQQSLRYV-RLARRAK 67 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 G T + LE+R D I+ R TI ARQ V H H N ++NI SYR + D I Sbjct: 68 GSTGQVSLQSLETRSDNIIPRLGMASTIPGARQSVTHEHTPANDHAINIPSYRREPTDAI 127 Query: 142 EVKQ 145 V+Q Sbjct: 128 AVRQ 131 >gi|33322067|gb|AAQ06752.1|AF496096_1 30s ribosomal protein S4 [Lactobacillus delbrueckii subsp. lactis] Length = 81 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 31 SYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSR-GDTSHNLI 89 SY PG HG + + S +G+QL KQK++ +G +SE++FR++F A + R G N + Sbjct: 1 SYVPGQHGPNHRGRLSEYGMQLHEKQKLRWMFG-LSERQFRTLFVRAGKIREGQHGINFM 59 Query: 90 SFLESRLDTIVYRAKFVPT 108 LE RLD +VYR T Sbjct: 60 ILLERRLDNVVYRLGLATT 78 >gi|21449991|ref|NP_659253.1| ribosomal protein S4 [Laminaria digitata] gi|21425316|emb|CAC87949.1| ribosomal protein S4 [Laminaria digitata] Length = 265 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+S K F+ F + S + LI LE RLD +YR F +I+ +RQ + Sbjct: 94 IRRFYGDLSHKAFKR-FCQPLVSLKNPPQKLIGALEGRLDISLYRLGFFHSIYYSRQSIF 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIE 142 H VLVNG+ + G + ++GD +E Sbjct: 153 HNKVLVNGKKIGHGGFILQKGDYVE 177 >gi|283795041|ref|YP_003359457.1| ribosomal protein S4 [Synedra acus] gi|261279697|gb|ACX62005.1| ribosomal protein S4 [Synedra acus] Length = 246 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 13/163 (7%) Query: 52 LRAKQKMKKYYGDISEKKFRSIF-------KEADRSRGDTSHNLISFLESRLDTIVYRAK 104 L KQK YYG + +K ++ K + + L+S LE RLD ++YRA Sbjct: 82 LHNKQKTSFYYGGLKKKFWKKQINHVLTRKKSFFKLKSFKHLALLSLLERRLDVLLYRAH 141 Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA-SVLEASQLAERD 163 F P+I ARQ + HV +N + S R K D + + + SK L L+ S L Sbjct: 142 FAPSIKYARQLIQQGHVNLNNSVITESSVRLKNNDKVSLNKISKNLVYDNLKNSTLWPLP 201 Query: 164 VPEYISVNHDNMVATFVRIPSSLK-DVPYPVIMQPN--LVVEF 203 P+Y+++N+ F S+ + +PV + PN L++ F Sbjct: 202 -PKYLAINYKTFEIIFTDTLSTYNYSMNFPVFL-PNFYLLIRF 242 >gi|268164038|ref|YP_003288803.1| ribosomal protein S4 [Saccharina angustata] gi|262318348|dbj|BAI48668.1| ribosomal protein S4 [Saccharina angustata] Length = 265 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 ++++YGD+S K F+++ K + + LI LE RLD +YR F +I+ +RQ + Sbjct: 94 VRRFYGDLSHKAFKNLCKPLV-ALKNPPQKLIGSLEGRLDISLYRLGFFHSIYYSRQAIL 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIE 142 H VLVNG+ + G + ++GD +E Sbjct: 153 HSKVLVNGKKIGHGGFILQKGDFVE 177 >gi|151944400|gb|EDN62678.1| nuclear accommodation of mitochondria [Saccharomyces cerevisiae YJM789] Length = 486 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 20/146 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ ++EK+++++FK + D S RG +T L +F Sbjct: 40 SLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETPFLLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 LE RLD ++RA F ++ ARQF+ H +V VNG + SY K GD+ VK Sbjct: 100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPD---- 155 Query: 151 ASVLEASQLAERDVPEYISVNHDNMV 176 VLEA + + E + ++ +V Sbjct: 156 -KVLEALGAKKPNFQEALKIDKTQIV 180 >gi|256273838|gb|EEU08760.1| Nam9p [Saccharomyces cerevisiae JAY291] Length = 486 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 20/146 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ ++EK+++++FK + D S RG +T L +F Sbjct: 40 SLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETPFLLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 LE RLD ++RA F ++ ARQF+ H +V VNG + SY K GD+ VK Sbjct: 100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKP----- 154 Query: 151 ASVLEASQLAERDVPEYISVNHDNMV 176 VLEA + E + ++ +V Sbjct: 155 VKVLEALGAKKPSFQEALKIDKTQIV 180 >gi|294669849|ref|ZP_06734908.1| hypothetical protein NEIELOOT_01742 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308242|gb|EFE49485.1| hypothetical protein NEIELOOT_01742 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 102 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 8/98 (8%) Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISV 170 ARQ V H+ ++VNG VNI S++ + GDV+ V++K+K+ + EA LA + +P +++V Sbjct: 10 ARQLVAHKAIVVNGHVVNIPSFQVQPGDVVAVREKAKKQVRIQEALGLAIQIGLPGWVAV 69 Query: 171 NHDNMVATFVRIP--SSLKDVPYPVIMQPNLVVEFYSR 206 + M F +P S L + LVVEFYS+ Sbjct: 70 DTGKMEGIFKNMPDRSELTG-----DINEQLVVEFYSK 102 >gi|224110334|ref|XP_002333103.1| predicted protein [Populus trichocarpa] gi|222834886|gb|EEE73335.1| predicted protein [Populus trichocarpa] Length = 305 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 14/104 (13%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ +YGD+ E R R TS+ I FL E RLD I+ R F Sbjct: 14 IQLQTTRKLSIFYGDLPE---------MHRGRERTSY--IPFLLNLERRLDVILVRLHFC 62 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 TI ARQ ++HR V VN R V+I + GD+I ++ ++ Sbjct: 63 ETIPQARQLISHRRVCVNNRMVSITHLKVSHGDIISFQENDARI 106 >gi|56554835|gb|AAV97983.1| Rps4 [Pteridium aquilinum subsp. feei] Length = 102 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 19/108 (17%) Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S L E+ +P++ Sbjct: 3 TIPAARQLVNHRHILVNNHVVDIPSYRCKPKDIITVRNRPTSYNALKGESLLGEK-IPDH 61 Query: 168 ISVNHD---------NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++++ N +A+ + ++ ++ LVVE+YSR Sbjct: 62 LTLSLSEGSRPTGLVNRIASRESVNLNINEL---------LVVEYYSR 100 >gi|190409124|gb|EDV12389.1| mitochondrial S4 ribosomal protein [Saccharomyces cerevisiae RM11-1a] gi|207341770|gb|EDZ69735.1| YNL137Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259149224|emb|CAY82466.1| Nam9p [Saccharomyces cerevisiae EC1118] gi|323307464|gb|EGA60737.1| Nam9p [Saccharomyces cerevisiae FostersO] gi|323331931|gb|EGA73343.1| Nam9p [Saccharomyces cerevisiae AWRI796] gi|323335936|gb|EGA77214.1| Nam9p [Saccharomyces cerevisiae Vin13] gi|323346867|gb|EGA81146.1| Nam9p [Saccharomyces cerevisiae Lalvin QA23] Length = 486 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 15/114 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ ++EK+++++FK + D S RG +T L +F Sbjct: 40 SLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETPFLLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD ++RA F ++ ARQF+ H +V VNG + SY K GD+ VK Sbjct: 100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVK 153 >gi|6324192|ref|NP_014262.1| Nam9p [Saccharomyces cerevisiae S288c] gi|1346661|sp|P27929|NAM9_YEAST RecName: Full=37S ribosomal protein NAM9, mitochondrial; AltName: Full=Nuclear accommodation of mitochondria protein 9; Flags: Precursor gi|507139|gb|AAA19439.1| NAM9+ protein [Saccharomyces cerevisiae] gi|854500|emb|CAA86888.1| mitochondrial ribosomal protein (putative) [Saccharomyces cerevisiae] gi|1302082|emb|CAA96019.1| NAM9 [Saccharomyces cerevisiae] gi|285814517|tpg|DAA10411.1| TPA: Nam9p [Saccharomyces cerevisiae S288c] Length = 486 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 15/114 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ ++EK+++++FK + D S RG +T L +F Sbjct: 40 SLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETPFLLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD ++RA F ++ ARQF+ H +V VNG + SY K GD+ VK Sbjct: 100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVK 153 >gi|323352538|gb|EGA85037.1| Nam9p [Saccharomyces cerevisiae VL3] Length = 486 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 15/114 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ ++EK+++++FK + D S RG +T L +F Sbjct: 40 SLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETPFLLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD ++RA F ++ ARQF+ H +V VNG + SY K GD+ VK Sbjct: 100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVK 153 >gi|118577552|gb|ABL07142.1| small ribosomal protein 4 [Peperomia rhomboidea] Length = 101 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 36 LHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 L Q K S + + L K+ YG + E++ + +++G L+ LE R Sbjct: 12 LKSQXXSXKRSQYRIXLEEXXKLXFXYG-LGERQLLRYVRIXGKAKGSXGQVLLQILEMR 70 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 LD I++R TI ARQ VNHRH+LVNG Sbjct: 71 LDNILFRLGMASTIPGARQLVNHRHILVNG 100 >gi|323303395|gb|EGA57191.1| Nam9p [Saccharomyces cerevisiae FostersB] Length = 486 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 15/114 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ ++EK+++++FK + D S RG +T L +F Sbjct: 40 SLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETPFLLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD ++RA F ++ ARQF+ H +V VNG + SY K GD+ VK Sbjct: 100 VLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVK 153 >gi|295311707|ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1| ribosomal protein S4 [Cucurbita pepo] Length = 356 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 20/153 (13%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFG-------LQLRAKQKMKK 60 + K R + N+W R + + R L +RR K + +QL+ +K+ Sbjct: 12 RFKTCRLLLGNVWNRELTIIQRRILR-KLRNKRRSIKRKIYSRENLNSYIQLQTTRKLSL 70 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAARQFVN 117 +YGD+ E R R T N I FL E+RLD I+ R F T+ ARQ ++ Sbjct: 71 FYGDLP-------ITEMHRGRERT--NYIPFLLNLETRLDVILVRLHFSSTLPQARQLIS 121 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 HR V VN V I ++ GD+I +K+ ++ Sbjct: 122 HRRVCVNKGMVPITHFKVSHGDLISLKENDARI 154 >gi|74325180|ref|YP_316600.1| ribosomal protein S4 [Thalassiosira pseudonana] gi|74100246|gb|AAZ99407.1| ribosomal protein S4 [Thalassiosira pseudonana] Length = 248 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHN----LISFLESRLDTIVYRAKFVP 107 L+ KQ++ +YG++ + + + KE+ + + LI LE+RLDTI+YR F Sbjct: 89 LQNKQRLSLFYGNLRKSYLKKLVKESLKESKHINSQATVLLIEKLETRLDTILYRTHFCH 148 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV-KQKSKQLASVLEASQLAERDVPE 166 + +A+Q ++H+ + VN + V + K+GD+I + K + +AS + S++ P+ Sbjct: 149 SFRSAKQLISHQKIYVNNKIVKHNFHALKKGDIITLDKSITNFVASNILKSEMWPIP-PK 207 Query: 167 YISVNHDNMVATFVR-IPSSLKDVPYPVIMQPNLVVEFYSR 206 + +N+ + + I S YP + N + FY + Sbjct: 208 HFYINYRTLQILIIEDIKYSNCFSYYPFWIDFNSFIRFYEK 248 >gi|84508517|ref|YP_448680.1| ribosomal protein S4 [Dictyota dichotoma] gi|45925685|gb|AAS79066.1| ribosomal protein S4 [Dictyota dichotoma] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 16/155 (10%) Query: 47 YFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFV 106 YF L ++++YGD+ + +S+ +A T + + LESRL +YR F Sbjct: 74 YFKNSLSNGVCVRRFYGDLRFEMLKSMCNKAK-----TVDSFMKCLESRLGINLYRLGFF 128 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV------KQKSKQLA---SVLEAS 157 ++F ++Q + H VLVNG + Y K GD+IE K KS+ + ++ + Sbjct: 129 SSVFESKQAILHGKVLVNGVKITFDHYILKPGDLIEFCPKFRSKLKSRMITRRKNINYSD 188 Query: 158 QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 +L P +I ++ N+ +F+ + + V YP Sbjct: 189 RLKLNPTPFWIQTDYSNL--SFIILCETNNAVFYP 221 >gi|157154427|gb|ABV24920.1| ribosomal protein small subunit 4 [Asplenium viride] Length = 101 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 11/104 (10%) Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 TI AARQ VNHRH+LVN V+I SYRCK D+I V+ + ++ S + ++ P++ Sbjct: 2 TIPAARQLVNHRHILVNNCIVDIPSYRCKPKDLITVRNRPTSCNAMRNKSLVGDK-TPDH 60 Query: 168 ISVN---HDNMVATFVRIPSSLKDVPYPVIMQPN--LVVEFYSR 206 ++V+ D R+ + +++ N LVVE+YSR Sbjct: 61 LTVSLSEGDRATGLVNRVANR-----ESIVLNINELLVVEYYSR 99 >gi|110598112|ref|ZP_01386390.1| Ribosomal protein S4 [Chlorobium ferrooxidans DSM 13031] gi|110340244|gb|EAT58741.1| Ribosomal protein S4 [Chlorobium ferrooxidans DSM 13031] Length = 84 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALTPKAEKYLERRPFPPGQHGQSRKGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIF 74 YG I EK+FR+ F Sbjct: 61 IYG-ILEKQFRNYF 73 >gi|54606786|dbj|BAD66809.1| ribosomal protein S4 [Beta vulgaris subsp. vulgaris] Length = 315 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 + +RI W K + + Y RK++ SY +QLR +K+ ++G++ K Sbjct: 23 LSQRIALRKWRMEKKSIKKKMYP-------RKNRNSY--IQLRTTRKLSLFHGNLPITKM 73 Query: 71 RSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 R TS+ I FL E+RLD I+ R F TI ARQ ++HR V VN Sbjct: 74 -------HRRTKRTSY--IPFLLNPETRLDVILVRLHFCETIPQARQPISHRKVCVNNGI 124 Query: 128 VNIGSYRCKEGDVIEVKQ 145 VNI ++ GD+I ++ Sbjct: 125 VNISHFKVSHGDIISFQE 142 >gi|197941028|gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] Length = 362 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ +YGD+ E R TS+ I FL E+R D I+ R F+ Sbjct: 67 IQLQTTRKLSLFYGDLP-------ITEMHRGTKRTSY--IPFLLNLETRFDVILLRLHFL 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I ++ GD+I ++ Sbjct: 118 ETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQE 156 >gi|22550361|ref|NP_689354.1| ribosomal protein S4 [Chaetosphaeridium globosum] gi|22417027|gb|AAM96626.1|AF494279_31 ribosomal protein S4 [Chaetosphaeridium globosum] Length = 176 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 38/200 (19%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 K KI R+IGEN+W K + TR L +R +K ++F + + +K++ +YG Sbjct: 2 KFKISRQIGENIWQTKK--LTTRQKRILLKIRRPSAKSNFFQ-RFQTFRKLRIFYGT--- 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 +L++ +E RLD I+ R F + ARQ++NH + VN Sbjct: 56 ---------------KPKQSLLN-MEKRLDVILVRMNFCSNLSTARQWINHGFIKVNFSK 99 Query: 128 VNIGSYRCKEGDVIEVK-------QKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V I S GD++ V +K+ Q V + +L+ ++ VN+ + + Sbjct: 100 VTIPSMLLTNGDIVSVCKNFIPFVKKNMQKIRVFKKHKLS------HLEVNYKLCIGILL 153 Query: 181 RIPSSLKDVPYPVIMQPNLV 200 P S V +P + N++ Sbjct: 154 FEPQS---VIFPSYFERNII 170 >gi|67968333|dbj|BAE00233.1| ribosomal protein S4 [Selaginella uncinata] gi|67968354|dbj|BAE00254.1| ribosomal protein S4 [Selaginella uncinata] Length = 196 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 21 GRPKSPVNTRSYG--PGLHGQRRKSKPSYFGLQLR----AKQKMKKYYGDISEKKFRSIF 74 GR P R G PG Q S P+ Q R KQ+ + ++G ++ R + Sbjct: 16 GRSPGPTRKRPAGRKPGYANQ---STPTTKAPQYRIRSEEKQRSRLHHGPTEQQSLRYV- 71 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 + A R++G T + E+R D I+ R T ARQ V H N R++++ SYR Sbjct: 72 RIAKRAKGSTGQVSLQSPETRSDNIIPRLGAASTTPGARQSVTHERAPANDRAISVPSYR 131 Query: 135 CKEGDVIEVKQ 145 K D I +Q Sbjct: 132 RKPADAIAARQ 142 >gi|160688766|gb|ABX45182.1| ribosomal protein S4 [Polysphondylium pallidum] Length = 268 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 +K + YY ++ ++ ++I+ + R++ + LE RLD+I+ R+ F T+++AR F Sbjct: 108 RKFRYYYKNLKIRQIKNIYSQLKRNKKKVKI-FMEILECRLDSILVRSNFFQTMYSARHF 166 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVI 141 + + H+ VNG +N +Y GD+I Sbjct: 167 IKYNHISVNGILINKINYNTNIGDLI 192 >gi|254569396|ref|XP_002491808.1| Mitochondrial ribosomal component of the small subunit [Pichia pastoris GS115] gi|238031605|emb|CAY69528.1| Mitochondrial ribosomal component of the small subunit [Pichia pastoris GS115] gi|328351692|emb|CCA38091.1| 37S ribosomal protein NAM9, mitochondrial [Pichia pastoris CBS 7435] Length = 469 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 26/146 (17%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK---------EADRSRGD 83 PG +GQ S + + +K + + Y+G+ + E K++ IF +A G+ Sbjct: 34 PGFNGQ------SLYQQKWNSKAETRAYHGEHLRESKWQHIFSPKLQGVAQLDASLQGGN 87 Query: 84 TSHN-----LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 T + LE RLD ++RA F ++ ARQ++ H++V VNG + +Y K G Sbjct: 88 TDETPMMLQTFAVLEKRLDVALFRAMFASSVRQARQYIIHKYVSVNGVVMRHPNYELKPG 147 Query: 139 DVIEVKQKSKQLASVLEASQLAERDV 164 DV V+ VLEA A+ D+ Sbjct: 148 DVFSVRPD-----KVLEALGKAKPDL 168 >gi|319738222|emb|CBJ17998.1| ribosomal protein S4 [Ectocarpus siliculosus] Length = 265 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +K++YGD+ K F+ F ++ D+S L+S LE RLD +YR F +I+ +RQ + Sbjct: 94 LKRFYGDLGHKAFKG-FCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAIL 152 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIE 142 H VLVNG+ + G + ++GD +E Sbjct: 153 HNKVLVNGKKIGHGGFVLQKGDFVE 177 >gi|11467052|ref|NP_042528.1| ribosomal protein S4 [Acanthamoeba castellanii] gi|1173304|sp|P46755|RT04_ACACA RecName: Full=Ribosomal protein S4, mitochondrial gi|562033|gb|AAD11821.1| ribosomal protein S4 [Acanthamoeba castellanii] Length = 374 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 4/152 (2%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDT 98 +++ K S F L+ +K+ ++G F ++ A S + LE RL+ Sbjct: 204 KKKTKKWSLFALKNIYYKKVSLFFGFRKVVDFFKVYNLAGALAKGNSFAVFLMLEGRLEN 263 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 + R P+I+ ++F+ + +V VN + +N SY +++ +K + S+ Sbjct: 264 FLMRLNLFPSIYFIKKFIEYGNVFVNNKIINYTSYHLNFNEIVSFNKKYYKKLYFFIKSK 323 Query: 159 LAERDV----PEYISVNHDNMVATFVRIPSSL 186 L +R V P ++ V++ +VA +R P L Sbjct: 324 LRQRKVIINAPSFVEVDYKLLVAMLIRNPDEL 355 >gi|239811700|gb|ACS27186.1| ribosomal protein S4 [Heterosigma akashiwo] Length = 268 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F L KQ++ +Y S K FK R N + LE RLD I+YR FV Sbjct: 75 FKENLLTKQRLATFYKLQSYK-----FKTLIRQNAKKQINFLYLLERRLDVILYRTGFVK 129 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 ++ +RQ ++H+ V VN + ++ K+GD+IE++ K Sbjct: 130 SLSQSRQLISHKKVSVNKHFLTQPNFLVKKGDLIEIQMHPK 170 >gi|288871915|dbj|BAI70601.1| ribosomal protein S4 [Heterosigma akashiwo] Length = 268 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F L KQ++ +Y S K FK R N + LE RLD I+YR FV Sbjct: 75 FKENLLTKQRLATFYKLQSYK-----FKTLIRQNAKKQINFLYLLERRLDVILYRTGFVK 129 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 ++ +RQ ++H+ V VN + ++ K+GD+IE++ Sbjct: 130 SLSQSRQLISHKKVSVNKHFLTQPNFLVKKGDLIEIQ 166 >gi|194033241|ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza sativa Japonica Group] Length = 352 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 ++L+ +K+ YYGD+ +E R R TS+ I FL E+RLD I+ R F Sbjct: 53 IKLQTTRKLSLYYGDLP-------IREMHRGRERTSY--IPFLLNQETRLDVILVRLHFC 103 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 T+ ARQ ++HR V +N V I + GD+I ++ Sbjct: 104 DTLPQARQLISHRRVCLNNGLVTITHLKVSHGDLISFQE 142 >gi|239811660|gb|ACS27147.1| ribosomal protein S4 [Heterosigma akashiwo] Length = 268 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F L KQ++ +Y S K FK R N + LE RLD I+YR FV Sbjct: 75 FKENLLTKQRLATFYKLQSYK-----FKTLIRQNAKRQINFLYLLERRLDVILYRTGFVK 129 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 ++ +RQ ++H+ V VN + ++ K+GD+IE++ K Sbjct: 130 SLSQSRQLISHKKVSVNKHFLTQPNFLVKKGDLIEIQMHPK 170 >gi|112253922|ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1| ribosomal protein S4 [Brassica napus] Length = 362 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ +YGD+ E R TS+ I FL E+R D I+ R F+ Sbjct: 67 IQLQTTRKLSLFYGDLP-------ITEMHRGTKRTSY--IPFLLNLETRFDVILLRLHFL 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I + GD+I ++ Sbjct: 118 ETIPQARQLISHRRVCVNKGMVSITHLKLSHGDIISFQE 156 >gi|315427190|dbj|BAJ48804.1| small subunit ribosomal protein S4 [Candidatus Caldiarchaeum subterraneum] gi|315428157|dbj|BAJ49742.1| small subunit ribosomal protein S4 [Candidatus Caldiarchaeum subterraneum] Length = 170 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 32/54 (59%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 FLE RL TIV+R TIF ARQ + H VLV G+ V SY K G+ E++ Sbjct: 106 FLERRLQTIVFRTGLARTIFHARQLITHGKVLVGGKKVRAPSYHVKRGEEEEIR 159 >gi|50292421|ref|XP_448643.1| hypothetical protein [Candida glabrata CBS 138] gi|49527955|emb|CAG61606.1| unnamed protein product [Candida glabrata] Length = 484 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 15/114 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------EADRS-RG----DTSHNLISF- 91 S + + AKQ+ + Y+G+ I+E +++++F + D S RG +T + +F Sbjct: 40 SLYQQKWSAKQETRAYHGEHITESRWQTMFSPKLDSVAQLDASLRGGVTKETPFLMQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD V+RA F ++ ARQF+ H +V VNG + Y K GD VK Sbjct: 100 TLEKRLDFAVFRAMFASSVRQARQFILHGNVYVNGVKIKHPGYTLKPGDTFNVK 153 >gi|255711504|ref|XP_002552035.1| KLTH0B05698p [Lachancea thermotolerans] gi|238933413|emb|CAR21597.1| KLTH0B05698p [Lachancea thermotolerans] Length = 480 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 15/106 (14%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFK---------EADRSRGDTSHNLI-----SFLESRLDT 98 AKQ+ + Y+G+ ++E ++++ F +A G+ I + LE RLD Sbjct: 48 AKQETRAYHGEHMTEGRWQTTFTPKLDSVAQLDASLKGGEIDQTPILLQTFAVLEKRLDF 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 ++RA F ++ ARQF+ H +V VNG + Y K GDV VK Sbjct: 108 ALFRAMFASSVRQARQFILHGNVFVNGIKITQPGYPLKAGDVFNVK 153 >gi|50303139|ref|XP_451507.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640638|emb|CAH03095.1| KLLA0A11660p [Kluyveromyces lactis] Length = 482 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 15/106 (14%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFK---------EADRSRGDTSHNLI-----SFLESRLDT 98 +KQ+ + Y+G+ ++E +++S+F+ +A GD I + LE RLD Sbjct: 48 SKQETRAYHGEHLTESRWQSVFEPQLNSVAQLDASLRGGDIEPTPILLQTYAVLEKRLDF 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 ++RA F ++ ARQF+ H +V VNG + Y K GDV V+ Sbjct: 108 ALFRAMFASSVRQARQFILHGNVHVNGVKITSPGYALKAGDVFNVR 153 >gi|328774061|gb|EGF84098.1| hypothetical protein BATDEDRAFT_4674 [Batrachochytrium dendrobatidis JAM81] Length = 216 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV-------- 143 LE R D +++R+ F +I+ ARQ V R VLVNG + R ++GD++ V Sbjct: 91 LERRPDVVLFRSHFADSIWKARQMVASRCVLVNGERCRYAARRLQDGDMVTVIPKAIPTL 150 Query: 144 -KQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIP---SSLKDVPYPV 193 QK Q+ +A P Y+ V+++ F+R P + ++P P+ Sbjct: 151 KGQKGTQMKFHPKAYMSPWMFTPAYLEVDYNTCSTVFLRSPVVQPNAMEIPSPL 204 >gi|156841474|ref|XP_001644110.1| hypothetical protein Kpol_505p29 [Vanderwaltozyma polyspora DSM 70294] gi|156114745|gb|EDO16252.1| hypothetical protein Kpol_505p29 [Vanderwaltozyma polyspora DSM 70294] Length = 482 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 15/106 (14%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFKEADRSRGDTSHNL--------------ISFLESRLDT 98 AKQ+ + Y+G+ I E +++S+F+ S +L S LE RLD Sbjct: 48 AKQETRSYHGEHIREGRWQSMFQSKLDSVAQLDASLRGSAVQETPFLLQTYSVLEKRLDF 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 ++R+ F +I ARQF+ H +V VNG V Y K GD+ VK Sbjct: 108 ALFRSMFASSIRQARQFIIHGNVYVNGTKVKHPGYTLKPGDMFNVK 153 >gi|260944778|ref|XP_002616687.1| hypothetical protein CLUG_03928 [Clavispora lusitaniae ATCC 42720] gi|238850336|gb|EEQ39800.1| hypothetical protein CLUG_03928 [Clavispora lusitaniae ATCC 42720] Length = 468 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 24/153 (15%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKEADRSRGDTSHNL--------------IS 90 S F + AKQ+ + Y+G+ ++E++++++F + S +L + Sbjct: 40 SLFQQKWTAKQETRAYHGEHLTERRWKTLFNPSLESVAQLDASLKGVDVAPTPMPLQTFA 99 Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 LE RL+ ++R+ F ++ AR+F+ + HV VNG ++ ++ K GD+ V + L Sbjct: 100 ALEKRLEFALFRSMFASSVRQAREFIKNGHVKVNGVTIKHPAFPLKSGDIFSVNPEKVML 159 Query: 151 A------SVLEASQLAERDVP---EYISVNHDN 174 A SV EA ++ ++ + +Y+S N Sbjct: 160 AMGRVKPSVAEAIKVDKKQIGVWNKYVSAAKQN 192 >gi|302660531|ref|XP_003021944.1| hypothetical protein TRV_03930 [Trichophyton verrucosum HKI 0517] gi|291185865|gb|EFE41326.1| hypothetical protein TRV_03930 [Trichophyton verrucosum HKI 0517] Length = 509 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 75 KEADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 KE R DT + L++F LE RLD ++RA F + ARQFV H V VNG+ + Sbjct: 116 KEDGRQVQDTPYMLMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGGVTVNGKKMQYPG 175 Query: 133 YRCKEGDVIEV 143 Y GD+ +V Sbjct: 176 YLLNPGDMFQV 186 >gi|2500402|sp|Q31708|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial Length = 362 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ +YGD+ E R TS+ I FL E+R D I R F+ Sbjct: 67 IQLQTTRKLPFFYGDLP-------ITEMHRGTKRTSY--IPFLLNLETRFDVIPLRLYFL 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I ++ GD+I ++ Sbjct: 118 ETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQE 156 >gi|321268723|gb|ADW79172.1| ribosomal protein S4 [Cyanophora paradoxa] Length = 447 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 10/113 (8%) Query: 43 SKPSYFGLQLRAKQKMKKYYGDISEKKFR-----SIFKEADRSRGDTSHN-----LISFL 92 S+ +F ++L K+ K +Y +++E + + +I++ + + S N + L Sbjct: 43 SRNIWFNMKLYIKKIFKNFYPNLTEIQLKKYIGENIYQYLTKDKIKHSQNTQIIKIYHIL 102 Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 ESRLDT++ R V T AARQ + H++V V+ R + Y G +I +K+ Sbjct: 103 ESRLDTMLIRTNLVKTPKAARQLIMHKNVFVDNRLITNPGYLLSNGQIIHIKK 155 >gi|110598113|ref|ZP_01386391.1| 30S ribosomal protein S4 [Chlorobium ferrooxidans DSM 13031] gi|110340245|gb|EAT58742.1| 30S ribosomal protein S4 [Chlorobium ferrooxidans DSM 13031] Length = 83 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 10/89 (11%) Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFV 180 ++NG+ VNI SY GD+IE +Q+SK + +V ++ ++ E +P +I V+ N + F+ Sbjct: 1 MINGKKVNIPSYLVSPGDLIEFRQRSKNMDAVTDSLNKAPESRIPTWIQVDKANQKSVFL 60 Query: 181 RIPSSLKDVPYPVIMQP---NLVVEFYSR 206 +P ++ I +P LVVE YS+ Sbjct: 61 SVPERVE------IQEPYNEQLVVELYSK 83 >gi|295311663|ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|259156791|gb|ACV96653.1| ribosomal protein S4 [Citrullus lanatus] Length = 355 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 12/104 (11%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ YGD+ E R TS+ I FL E+RLD I+ R F Sbjct: 60 IQLQTTRKLSLNYGDLP-------ITEMHRGTERTSY--IPFLLNLETRLDVILVRLHFS 110 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 TI ARQ ++HR V VN V+I ++ GD+I ++ ++ Sbjct: 111 ETIPQARQLISHRRVCVNKGMVSITHFKVSHGDLISFQENDARI 154 >gi|57014001|ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum] Length = 349 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +Q + +K+ +YGD+ E R R TS+ I FL E+R D I R F Sbjct: 57 IQSQTTRKLSLFYGDLP-------ITEMHRGRERTSY--IPFLLNPETRSDVIPVRLHFC 107 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN VNI ++ GD+I ++ Sbjct: 108 ETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQE 146 >gi|322712486|gb|EFZ04059.1| 30S ribosomal subunit S4 [Metarhizium anisopliae ARSEF 23] Length = 489 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 77 ADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 +D+ G T + ++F LE RLDT V+RA F ++ ARQFV H V VNG+ + SY+ Sbjct: 99 SDQFTGMTPYMQMTFAPLERRLDTAVFRALFASSVRQARQFVIHGAVKVNGKKMIHPSYQ 158 Query: 135 CKEGDVIEV 143 GD+ +V Sbjct: 159 LNPGDMFQV 167 >gi|326472324|gb|EGD96333.1| 30S ribosomal subunit S4 [Trichophyton tonsurans CBS 112818] Length = 483 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 75 KEADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 +E R DT + L++F LE RLD ++RA F + ARQFV H V VNG+ + Sbjct: 103 REDGRQVQDTPYMLMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGGVTVNGKKMQYPG 162 Query: 133 YRCKEGDVIEV 143 Y GD+ +V Sbjct: 163 YLLNPGDMFQV 173 >gi|324309734|gb|ADY18515.1| ribosomal protein S4 [Phaeodactylum tricornutum] Length = 249 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Query: 52 LRAKQKMKKYYGDISE---KKFRSIFKEADRSRGDTSHNLISFL-----ESRLDTIVYRA 103 L +K+ YG I+ KK+ ++ K+ + + + + L ESRLD +++RA Sbjct: 82 LHTTKKLALLYGGITSRQLKKYLNLMKKENGRKNNEKKETFNLLPLKKFESRLDIVLHRA 141 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 KFV +I AARQ + H +V VN + S+ + GD IE+ Q + L + Sbjct: 142 KFVFSIKAARQLIVHGNVYVNQVKIKSKSHILRPGDSIEMNSSYSQRINESSFQTLKSKP 201 Query: 164 V----PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVV 201 P ++ +N+ M F I S + +Q VV Sbjct: 202 FWPLPPNHLHINYRTMQIIFGTIDLSGFSTAFTFHLQLKNVV 243 >gi|302510661|ref|XP_003017282.1| hypothetical protein ARB_04161 [Arthroderma benhamiae CBS 112371] gi|291180853|gb|EFE36637.1| hypothetical protein ARB_04161 [Arthroderma benhamiae CBS 112371] Length = 526 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 75 KEADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 +E R DT + L++F LE RLD ++RA F + ARQFV H V VNG+ + Sbjct: 113 REDGRQVPDTPYMLMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGGVTVNGKKMQYPG 172 Query: 133 YRCKEGDVIEV 143 Y GD+ +V Sbjct: 173 YLLNPGDMFQV 183 >gi|11466324|ref|NP_051152.1| ribosomal protein S4 [Cafeteria roenbergensis] gi|6180106|gb|AAF05803.1|AF193903_26 ribosomal protein S4 [Cafeteria roenbergensis] Length = 1641 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFK-EADRSRGDTSHNLISFLESRLDTIVYRAKFV 106 + ++L K+ +Y + + K R+ FK + ++SR N E+RLD I +R K Sbjct: 90 YKVELYRKKGFLSFYRKLDDSKIRNWFKHQYNKSRQFKIINFFKMFETRLDVISFRMKLT 149 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIG-----SYRCKEGDVI 141 PTIF A F+ R G +N G SYR + GD+I Sbjct: 150 PTIFLANMFIKTR-----GLQINYGLKKEPSYRLQIGDLI 184 >gi|327295753|ref|XP_003232571.1| 30S ribosomal subunit S4 [Trichophyton rubrum CBS 118892] gi|326464882|gb|EGD90335.1| 30S ribosomal subunit S4 [Trichophyton rubrum CBS 118892] Length = 500 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 75 KEADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 +E R DT + L++F LE RLD ++RA F + ARQFV H V VNG+ + Sbjct: 103 REDGRQVPDTPYMLMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGGVTVNGKKMQYPG 162 Query: 133 YRCKEGDVIEV 143 Y GD+ +V Sbjct: 163 YLLNPGDMFQV 173 >gi|254585373|ref|XP_002498254.1| ZYRO0G05918p [Zygosaccharomyces rouxii] gi|238941148|emb|CAR29321.1| ZYRO0G05918p [Zygosaccharomyces rouxii] Length = 479 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 20/133 (15%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFK-------EADRS-----RGDTSHNLISF--LESRLDT 98 AKQ+ + Y+G+ ++EK+++ F + D S +T L +F LE RLD Sbjct: 48 AKQETRAYHGEHLTEKRWQFFFNPKLDSVAQLDASLKGGKEEETPFLLQTFAVLEKRLDF 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ 158 V+RA F ++ ARQF+ +V VNG + +Y K GDV V+ + VLEA Sbjct: 108 AVFRAMFASSVRQARQFILQGNVFVNGIKIAHPNYTLKPGDVFRVRP-----SKVLEALG 162 Query: 159 LAERDVPEYISVN 171 + V E + V+ Sbjct: 163 AKKPSVQESLKVD 175 >gi|302348808|ref|YP_003816446.1| 30S ribosomal protein S4P [Acidilobus saccharovorans 345-15] gi|302329220|gb|ADL19415.1| 30S ribosomal protein S4P [Acidilobus saccharovorans 345-15] Length = 177 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Query: 78 DRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC-- 135 D G T+ N+ LE RL T+VYR TI+ ARQ V H H+ +NGR V Y Sbjct: 90 DDVLGLTAENV---LERRLQTLVYRKGLAKTIYQARQLVTHGHIAINGRRVTSPGYIVPR 146 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAERDVPE 166 E D IE+ S AS ++ E+DV + Sbjct: 147 DEEDRIEIAPGSPLRASAQQSG--GEQDVAQ 175 >gi|45198580|ref|NP_985609.1| AFR062Cp [Ashbya gossypii ATCC 10895] gi|44984531|gb|AAS53433.1| AFR062Cp [Ashbya gossypii ATCC 10895] Length = 473 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 15/106 (14%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFK---------EADRSRGDTSHNLI-----SFLESRLDT 98 +KQ+ + Y+G+ ++E +++S F +A GD + I + LE RL+ Sbjct: 48 SKQETRAYHGEHLTESRWQSTFSPRLTSVAQLDASLKGGDVAPTPILMQTYAVLEKRLEF 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 ++RA F ++ ARQF+ H +V VNG ++ Y K GD+ V+ Sbjct: 108 ALFRAMFASSVRQARQFILHGNVYVNGVTMKHPGYPLKAGDMFSVR 153 >gi|189197847|ref|XP_001935261.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187981209|gb|EDU47835.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 426 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 36/143 (25%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK----------------------------- 75 +YF + AK + Y+G+ I EKK++ +F+ Sbjct: 40 TYFQQKWTAKASTRAYHGEHIREKKWKHMFRRNLPAVVAMDHRYLARHDGSEQAAGRGMG 99 Query: 76 --EADRSRGD--TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 +A+++R T + +++ LE RLDT ++RA F ++ ARQFV H V VNG+ + Sbjct: 100 ADQAEKARTPPMTPYMQMAYYPLERRLDTAIFRALFASSVRQARQFVVHGLVKVNGKKMI 159 Query: 130 IGSYRCKEGDVIEVKQKSKQLAS 152 Y GD+ +V+ S A+ Sbjct: 160 YPGYALNPGDMFQVEPSSVMFAT 182 >gi|134045318|ref|YP_001096804.1| 30S ribosomal protein S4P [Methanococcus maripaludis C5] gi|172044139|sp|A4FWL4|RS4_METM5 RecName: Full=30S ribosomal protein S4P gi|132662943|gb|ABO34589.1| SSU ribosomal protein S4P [Methanococcus maripaludis C5] Length = 178 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIE 142 S N+ S LE RL TIVYR T ARQF+ H H+ VNG+ V +Y E D IE Sbjct: 95 SLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIE 154 >gi|310796626|gb|EFQ32087.1| S4 domain-containing protein [Glomerella graminicola M1.001] Length = 539 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + A+QF H V VNG+ + G+Y+ GD+ +V Sbjct: 172 LERRLDVAIFRAMFASSTLQAKQFCTHGAVKVNGKPMRYGAYKLNPGDMFQV 223 >gi|322695401|gb|EFY87210.1| 30S ribosomal subunit S4, putative [Metarhizium acridum CQMa 102] Length = 525 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 9/84 (10%) Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHR 119 +GD++ KF S D+ T + ++F LE RLDT V+RA F ++ ARQFV H Sbjct: 127 FGDVN--KFLS-----DQFTSMTPYMQMTFAPLERRLDTAVFRALFASSVRQARQFVIHG 179 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEV 143 V VNG+ + SY+ GD+ +V Sbjct: 180 AVKVNGKKMVHPSYQLNPGDMFQV 203 >gi|116754908|ref|YP_844026.1| 30S ribosomal protein S4P [Methanosaeta thermophila PT] gi|121694237|sp|A0B9L2|RS4_METTP RecName: Full=30S ribosomal protein S4P gi|116666359|gb|ABK15386.1| SSU ribosomal protein S4P [Methanosaeta thermophila PT] Length = 183 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 32/59 (54%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 S + LE RL T VYR TI ARQF+ H H+ V G+ V + SY K GD + + Sbjct: 97 SLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTI 155 >gi|224542511|ref|ZP_03683050.1| hypothetical protein CATMIT_01694 [Catenibacterium mitsuokai DSM 15897] gi|224524568|gb|EEF93673.1| hypothetical protein CATMIT_01694 [Catenibacterium mitsuokai DSM 15897] Length = 91 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 5/94 (5%) Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDV-PEYISVNH 172 V+HR V VNG+SVN+ SY+ K GD+I + +++++ V E+ + ++ D+ P ++ V+ Sbjct: 1 MVSHRGVTVNGKSVNLPSYQVKAGDIIALSERAQKQLRVQESLTVSSQMDLSPSWVEVDS 60 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P D+P + L+VE YS+ Sbjct: 61 KKFSGVFKAVPDR-ADLPADI--NEALIVELYSK 91 >gi|301500901|ref|YP_003795313.1| ribosomal protein S4 [Chromera velia] gi|300069447|gb|ADJ66555.1| ribosomal protein S4 [Chromera velia] Length = 2072 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 F +L+ KQK++ YY ++++ + ++ + D + + L++ LE RLD+++YR F P Sbjct: 1893 FLHRLKLKQKIQFYY-NLTDHQLKNYLRRRDSVKANFKLKLLAKLELRLDSLIYRLGFAP 1951 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEY 167 +I AAR+ + +H+LVN + C D + V L +L+ L +++ +Y Sbjct: 1952 SILAARKLITQKHILVNNCMTYAPNLVCSIYDTVRVAPYRASLNHILKNIYL-NKELVKY 2010 Query: 168 I 168 I Sbjct: 2011 I 2011 >gi|46121899|ref|XP_385503.1| hypothetical protein FG05327.1 [Gibberella zeae PH-1] Length = 514 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 LE RLDT V+RA F ++ ARQFV H V VNG+ + SY GD+ +V + Sbjct: 160 LERRLDTAVFRAMFASSVRQARQFVIHGAVKVNGKKMVHPSYALNPGDMFQV-----DIE 214 Query: 152 SVLEASQLAERDVPEYISVNHD 173 VL + E+ P I +HD Sbjct: 215 KVLYGT--GEQKKPNSIQESHD 234 >gi|320581194|gb|EFW95415.1| Mitochondrial ribosomal component of the small subunit [Pichia angusta DL-1] Length = 476 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 15/114 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKE------------ADRSRGDTSHNLISF- 91 S F + +KQK + Y+G+ I E ++ +F++ + ++ +T L +F Sbjct: 40 SMFMQKWDSKQKTRGYHGEHIPEGRWLKLFQKKLDGVAQMDASLSGKANDETPMVLQTFA 99 Query: 92 -LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD V+RA F ++ ARQF+ V VNG + SY GDV V+ Sbjct: 100 VLEKRLDVAVFRAMFASSVRQARQFILAGDVKVNGVPIKHPSYPLSPGDVFSVE 153 >gi|170291191|ref|YP_001738007.1| 30S ribosomal protein S4P [Candidatus Korarchaeum cryptofilum OPF8] gi|226699077|sp|B1L795|RS4_KORCO RecName: Full=30S ribosomal protein S4P gi|170175271|gb|ACB08324.1| ribosomal protein S4 [Candidatus Korarchaeum cryptofilum OPF8] Length = 166 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK--EGDVIEV 143 FLE RL TIV+R F + + ARQ + H H+ VNGR + SY K E D IE Sbjct: 98 QFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIEC 153 >gi|330946008|ref|XP_003306674.1| hypothetical protein PTT_19866 [Pyrenophora teres f. teres 0-1] gi|311315724|gb|EFQ85225.1| hypothetical protein PTT_19866 [Pyrenophora teres f. teres 0-1] Length = 426 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 36/143 (25%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK----------------------------- 75 +YF + AK + Y+G+ I EKK++ +F+ Sbjct: 40 TYFQQKWTAKASTRAYHGEHIREKKWKHMFRRNLPAVVAMDHRYLARNDGSEQAAGRGMG 99 Query: 76 ----EADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 E R+ T + +++ LE RLDT ++RA F ++ ARQFV H V VNG+ + Sbjct: 100 ADVPEKVRTPPMTPYMQMAYYPLERRLDTAIFRALFASSVRQARQFVVHGLVKVNGKKMI 159 Query: 130 IGSYRCKEGDVIEVKQKSKQLAS 152 Y GD+ +V+ S A+ Sbjct: 160 YPGYALNPGDMFQVEPSSVMFAT 182 >gi|167463872|ref|ZP_02328961.1| RpsD [Paenibacillus larvae subsp. larvae BRL-230010] Length = 82 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 10/87 (11%) Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVR 181 VNG+ V+I SY+ GDVI ++++S+ L S+ EA L R+ +P Y+ N + F+R Sbjct: 3 VNGKKVDIASYQVSVGDVIGLRERSRNLKSIKEA--LENRNFLPAYLEFNEQALEGKFIR 60 Query: 182 IP--SSLKDVPYPVIMQPNLVVEFYSR 206 +P S L + +VEFYSR Sbjct: 61 LPERSELAQE-----IDEKQIVEFYSR 82 >gi|118626063|emb|CAL41752.1| small ribosomal protein 4 [Acrobolbus wilsonii] Length = 97 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 4/97 (4%) Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYIS 169 ARQ VNHRH+ +N V+I SY C GD+I VK + K + +++ L ++ +P +++ Sbjct: 2 GARQLVNHRHISINNDIVDIPSYNCGPGDIITVKNERKSQSMIIKNINLFQKSKMPSHLT 61 Query: 170 VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + FV ++ + + LVVE+YSR Sbjct: 62 FDSTELRG-FVN--QTINREWIDLKINELLVVEYYSR 95 >gi|302882319|ref|XP_003040070.1| hypothetical protein NECHADRAFT_72284 [Nectria haematococca mpVI 77-13-4] gi|256720937|gb|EEU34357.1| hypothetical protein NECHADRAFT_72284 [Nectria haematococca mpVI 77-13-4] Length = 511 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 15/91 (16%) Query: 59 KKYYGDISE---KKFRSIFKEADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAAR 113 K YGD++E + F ++ T + ++F LE RLDT V+RA F ++ AR Sbjct: 132 KSGYGDVNEMLSQHFENM----------TPYMQMTFAPLERRLDTAVFRAMFASSVRQAR 181 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 QF+ H V VNG+ + SY GD+ +V+ Sbjct: 182 QFIIHGAVKVNGKKMVHPSYALNPGDMFQVQ 212 >gi|31442364|ref|NP_852621.1| ribosomal protein S4 [Eimeria tenella strain Penn State] gi|74810536|sp|Q7YN81|RR4_EIMTE RecName: Full=Apicoplast 30S ribosomal protein S4 gi|31322456|gb|AAO40222.1| ribosomal protein S4 [Eimeria tenella] Length = 200 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 29 TRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL 88 T+ + + K S++ L+L KQK+K + +SEK + + NL Sbjct: 25 TKYFILNTNKYNNKMILSFYLLELFEKQKLK-FTFSLSEKIIKKYILFMHKYNYK-KFNL 82 Query: 89 ISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 I+ +E RLD ++ + TI A+Q + H + VN + + I S+ K+GD+I + KS Sbjct: 83 INIIEIRLDNTIFNLGYSITIAQAKQLIIHGYFFVNFKLIKIPSFLLKKGDIITLSPKS 141 >gi|50546507|ref|XP_500723.1| YALI0B10494p [Yarrowia lipolytica] gi|49646589|emb|CAG82968.1| YALI0B10494p [Yarrowia lipolytica] Length = 571 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 LE RLD V+R+ F +I A QF+ +V VNG + SY K GD+I VK + A Sbjct: 121 LEKRLDFAVFRSMFAASIRQAGQFIRQGNVTVNGVKIKHASYTLKPGDLISVKPEKVLFA 180 Query: 152 ------SVLEASQLAERDVPEY 167 SV EA ++ R + +Y Sbjct: 181 AGKAKPSVEEAVKIDNRQIKKY 202 >gi|10802791|gb|AAG23617.1|AF244668_1 ribosomal protein S4 [Carboxydothermus hydrogenoformans] Length = 155 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 23/146 (15%) Query: 10 KIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 KI R G NL+ + + R+ GP G R P+ + + R K K K YG Sbjct: 14 KICSREGXNLFSKXDRXDTDXXSMARRNKGPXQXGXTR-PMPTEYAPRXRXKLKAKXIYG 72 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLD--------TIVYRAKFVPTIFAARQF 115 + E +F++ A+R G T N + LE R D T++ RA ARQ Sbjct: 73 -VZEVQFQTXXVMAERXXGTTGENXVVLLERRSDKHGRSDRTTLMSRA-------LARQV 124 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVI 141 V +N R VNI SY K G+VI Sbjct: 125 VRLNLTPLNXRQVNILSYVVKXGEVI 150 >gi|288931230|ref|YP_003435290.1| ribosomal protein S4 [Ferroglobus placidus DSM 10642] gi|288893478|gb|ADC65015.1| ribosomal protein S4 [Ferroglobus placidus DSM 10642] Length = 171 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 9/92 (9%) Query: 51 QLRAKQKMKKYYGDISEKKFRSIFKEADR-------SRGDTSHNLI--SFLESRLDTIVY 101 +L AK + G+I++ K + I K+ +R + D NL FLE RL TIVY Sbjct: 57 ELLAKVNLPGREGEIAKAKAQQIIKKLNRIGVLPENATLDDILNLTVEDFLERRLQTIVY 116 Query: 102 RAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 R TI ARQ + H H+ + GR V SY Sbjct: 117 RMGLANTIKQARQLIVHGHIAIAGRRVTSPSY 148 >gi|315045031|ref|XP_003171891.1| 37S ribosomal protein NAM9 [Arthroderma gypseum CBS 118893] gi|311344234|gb|EFR03437.1| 37S ribosomal protein NAM9 [Arthroderma gypseum CBS 118893] Length = 475 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 83 DTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 +T + L++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 109 ETPYMLMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGGVTVNGKKMQYPGYLLNPGDM 168 Query: 141 IEV 143 +V Sbjct: 169 FQV 171 >gi|70605931|ref|YP_254801.1| 30S ribosomal protein S4P [Sulfolobus acidocaldarius DSM 639] gi|73920776|sp|P39467|RS4_SULAC RecName: Full=30S ribosomal protein S4P gi|68566579|gb|AAY79508.1| 30S ribosomal protein S4P [Sulfolobus acidocaldarius DSM 639] Length = 176 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 67 EKKFRSIFKEADRSRGDTSHNLI--SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 +K +R E D S D +L ++LE RL TIVY+ TI+ ARQ + H H+ ++ Sbjct: 75 QKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAIS 134 Query: 125 GRSVNIGSYRCKEGD 139 GR V Y G+ Sbjct: 135 GRKVTSPGYVVLRGE 149 >gi|150401523|ref|YP_001325289.1| 30S ribosomal protein S4 [Methanococcus aeolicus Nankai-3] gi|171460892|sp|A6UW05|RS4_META3 RecName: Full=30S ribosomal protein S4P gi|150014226|gb|ABR56677.1| ribosomal protein S4 [Methanococcus aeolicus Nankai-3] Length = 177 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 30/49 (61%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 S NL S LE RL T+V+R T ARQF+ H H+ VNG+ +N SY Sbjct: 95 SLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSY 143 >gi|11496535|ref|NP_044545.1| ribosomal protein S4 [Toxoplasma gondii RH] gi|74828576|sp|Q9XQQ7|RR4_TOXGO RecName: Full=Apicoplast 30S ribosomal protein S4 gi|5231238|gb|AAD41132.1|U87145_1 ribosomal protein S4 [Toxoplasma gondii] Length = 198 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 +K K S F +QL KQK+K Y + E + + FK + NLI +E RLD + Sbjct: 36 KKGKTSSFRIQLLEKQKLK-YNYRLKENQIKKYFKYIKLLK---IFNLIQIIELRLDATI 91 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +R F +I ARQ + H + +N V S+ E D+I + Sbjct: 92 FRLGFAKSINQARQLITHGFIFINSILVKKPSFILTEKDLIYI 134 >gi|159905736|ref|YP_001549398.1| 30S ribosomal protein S4 [Methanococcus maripaludis C6] gi|226699087|sp|A9A9Z3|RS4_METM6 RecName: Full=30S ribosomal protein S4P gi|159887229|gb|ABX02166.1| ribosomal protein S4 [Methanococcus maripaludis C6] Length = 178 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIE 142 S ++ S LE RL TIVYR T ARQF+ H H+ VNG+ V +Y E D IE Sbjct: 95 SLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIE 154 >gi|145932464|ref|YP_001165376.1| ribosomal protein S4 [Phytophthora ramorum] gi|110169662|gb|ABG54127.1| ribosomal protein S4 [Phytophthora ramorum] gi|188038025|gb|ACD46643.1| ribosomal protein S4 [Phytophthora ramorum] Length = 153 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 40 RRKSKPS----YFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR--SRGDTSHNLISFLE 93 R++ KP +F +L KQ+ + +YG I E + +++FK+ + ++ + N + LE Sbjct: 42 RKEIKPEKRKKFFQKRLFEKQQFRNFYGCIHEYQLKNLFKKLSKKDNKINIFKNFVVLLE 101 Query: 94 SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 SRLD + R K V TIF A+Q +NH+ + +N + +N + ++GD+I++ Sbjct: 102 SRLDINLVRLKLVKTIFQAKQLINHKKIKINNKIINKPNLILQKGDIIQI 151 >gi|114151620|ref|YP_740450.1| ribosomal protein S4 [Zea luxurians] gi|110287616|gb|ABG65662.1| ribosomal protein S4 [Zea luxurians] Length = 358 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +E R R TS+ I FL E+R D I R +F T+ A Sbjct: 59 RKLSLYYGDLP-------IREMHRGRERTSY--IPFLLNQETRSDVIPVRLRFSDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I ++ GD+I K+ Sbjct: 110 RQPISHRRVCLNNGLVTITHFKVSHGDLISFKE 142 >gi|150402490|ref|YP_001329784.1| 30S ribosomal protein S4P [Methanococcus maripaludis C7] gi|171472890|sp|A6VGQ7|RS4_METM7 RecName: Full=30S ribosomal protein S4P gi|150033520|gb|ABR65633.1| ribosomal protein S4 [Methanococcus maripaludis C7] Length = 178 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIE 142 S N+ S LE RL T+VY+ T ARQF+ H H+ VNG+ V SY E D IE Sbjct: 95 SLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIE 154 >gi|115278626|ref|YP_762497.1| ribosomal protein S4 [Tripsacum dactyloides] gi|114432117|gb|ABI74666.1| ribosomal protein S4 [Tripsacum dactyloides] Length = 356 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +E R R TS+ I FL E+R D I R +F T+ A Sbjct: 59 RKLSLYYGDLP-------IREMHRGRERTSY--IPFLLNQETRSDVIPVRLRFSDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I ++ GD+I K+ Sbjct: 110 RQPISHRRVCLNNGLVTITHFKVSHGDLISFKE 142 >gi|94502571|ref|YP_588274.1| ribosomal protein S4 [Zea mays subsp. mays] gi|114151588|ref|YP_740375.1| ribosomal protein S4 [Zea perennis] gi|114151655|ref|YP_740407.1| ribosomal protein S4 [Zea mays subsp. parviglumis] gi|40795010|gb|AAR91054.1| ribosomal protein S4 [Zea mays] gi|93116061|gb|ABE98694.1| ribosomal protein S4 [Zea mays subsp. mays] gi|93116105|gb|ABE98737.1| ribosomal protein S4 [Zea mays subsp. mays] gi|93116154|gb|ABE98785.1| ribosomal protein S4 [Zea mays subsp. mays] gi|102567922|gb|ABF70839.1| ribosomal protein S4 [Zea perennis] gi|102567988|gb|ABF70872.1| ribosomal protein S4 [Zea mays subsp. parviglumis] gi|102579654|gb|ABF70934.1| ribosomal protein S4 [Zea mays subsp. mays] Length = 358 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +E R R TS+ I FL E+R D I R +F T+ A Sbjct: 59 RKLSLYYGDLP-------IREMHRGRERTSY--IPFLLNQETRSDVIPVRLRFSDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I ++ GD+I K+ Sbjct: 110 RQPISHRRVCLNNGLVTITHFKVSHGDLISFKE 142 >gi|629415|pir||S47021 ribosomal protein S4 - Sulfolobus acidocaldarius gi|517288|emb|CAA56478.1| ribosomal protein S4 [Sulfolobus acidocaldarius] Length = 160 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 67 EKKFRSIFKEADRSRGDTSHNLI--SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 +K +R E D S D +L ++LE RL TIVY+ TI+ ARQ + H H+ ++ Sbjct: 64 QKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAIS 123 Query: 125 GRSVNIGSYRCKEGD 139 GR V Y G+ Sbjct: 124 GRKVTSPGYVVLRGE 138 >gi|110225704|ref|YP_665709.1| ribosomal protein S4 [Mesostigma viride] gi|17222575|gb|AAL36748.1|AF353999_28 ribosomal protein S4 [Mesostigma viride] Length = 270 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 11/118 (9%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF---LESRLDTIVYR 102 S FG +L+ K+ ++ YG +S ++++I + ++ + + SF LE RLD ++ + Sbjct: 42 SSFGKRLQTKKALEAIYGKLSIPQWKNIISKKNKPK------VTSFFLNLERRLDRVICQ 95 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK--QKSKQLASVLEASQ 158 A+F + ARQ++ H + VN + V K GD+I + S +S+LE S+ Sbjct: 96 ARFASSSNMARQWILHEKIFVNNQLVTYPGTILKNGDIISLSPDMFSLMWSSLLENSK 153 >gi|45358883|ref|NP_988440.1| 30S ribosomal protein S4P [Methanococcus maripaludis S2] gi|61215572|sp|Q6LXN0|RS4_METMP RecName: Full=30S ribosomal protein S4P gi|45047749|emb|CAF30876.1| SSU ribosomal protein S4P (S9E) [Methanococcus maripaludis S2] Length = 178 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIE 142 S N+ S LE RL TIV+R T ARQF+ H H+ VNG+ V +Y E D IE Sbjct: 95 SLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIE 154 >gi|255721325|ref|XP_002545597.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240136086|gb|EER35639.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 461 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 21/124 (16%) Query: 41 RKSKPSYFGLQL-----RAKQKMKKYYGD-ISEKKFRSIFKEAD-------------RSR 81 RK SYFG L AK + +KY+G+ + EK F+++ + D R Sbjct: 30 RKDPLSYFGKTLYQQKWAAKSETRKYHGEHLREKHFKNVLFDKDLKTYSQLDASLKGRDV 89 Query: 82 GDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 T L +F LE RL+ ++R+ F ++ ARQF+ V VNG + S+ + GD Sbjct: 90 APTPITLQTFGTLEKRLEVALFRSMFASSLRQARQFILGGFVKVNGVVMKYPSFPLQSGD 149 Query: 140 VIEV 143 V V Sbjct: 150 VFSV 153 >gi|225555459|gb|EEH03751.1| NAM9+ protein [Ajellomyces capsulatus G186AR] Length = 490 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T H ++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 113 TPHMQMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNPGDLF 172 Query: 142 EV 143 +V Sbjct: 173 QV 174 >gi|50425337|ref|XP_461262.1| DEHA2F20988p [Debaryomyces hansenii CBS767] gi|49656931|emb|CAG89651.1| DEHA2F20988p [Debaryomyces hansenii] Length = 467 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 15/113 (13%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFKEADRSRGDTSHNL--------------ISFLESRLDT 98 AK + + Y+G+ ++E +++ IFK S +L + LE RL+ Sbjct: 48 AKAETRAYHGEHLTESRWKQIFKPNLESVAQLDASLKGVEVAPTPMPLQTYAALEKRLEF 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 ++RA F ++ ARQF+ HV VNG V S+ + GDV VK + LA Sbjct: 108 ALFRAMFASSVRQARQFILGGHVKVNGVVVKHPSFPLQSGDVFNVKPEKVLLA 160 >gi|240273798|gb|EER37317.1| NAM9+ protein [Ajellomyces capsulatus H143] gi|325094771|gb|EGC48081.1| NAM9+ protein [Ajellomyces capsulatus H88] Length = 490 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T H ++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 113 TPHMQMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNPGDLF 172 Query: 142 EV 143 +V Sbjct: 173 QV 174 >gi|154287040|ref|XP_001544315.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150407956|gb|EDN03497.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 453 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T H ++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 152 TPHMQMTFAPLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNSGDLF 211 Query: 142 EVKQKSKQLAS 152 +V + A+ Sbjct: 212 QVDPERVMFAT 222 >gi|12330478|gb|AAG52776.1| ribosomal protein 4 [Pleurophascum occidentale] Length = 96 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S + ++L KQK++ +YG I+E++ + + A +++G T L+ LE RLD +++R Sbjct: 28 KISQYRIRLEXKQKLRFHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRL 86 Query: 104 KFVPTIFAA 112 PTI A Sbjct: 87 GMAPTIPGA 95 >gi|296810354|ref|XP_002845515.1| 37S ribosomal protein NAM9 [Arthroderma otae CBS 113480] gi|238842903|gb|EEQ32565.1| 37S ribosomal protein NAM9 [Arthroderma otae CBS 113480] Length = 477 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 83 DTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 DT + ++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 117 DTPYMQMTFAPLERRLDVAIFRALFASSTRQARQFVIHGGVTVNGKKMQYPGYLLNPGDM 176 Query: 141 IEV 143 +V Sbjct: 177 FQV 179 >gi|20271154|gb|AAM18532.1|AF375591_1 ribosomal protein S4 [Helianthus annuus] Length = 331 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLD 97 RK+ SY +QL+ +K+ ++GD+ + RG + I F E+R D Sbjct: 46 RKNLNSY--IQLQTTRKLPLFHGDLPI---------TEMHRGTERTSYIPFPLNPETRSD 94 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 I R F T+ ARQ ++HR + VN V+I S++ +GD I +K+ + S + S Sbjct: 95 VIPVRLHFSETLPQARQPISHRRLCVNNVIVSITSFQVSQGDFISLKENDAIIYSEIRRS 154 Query: 158 QLAERDVPEYISVNHDNMVATFVR 181 E V + I + D+ V + R Sbjct: 155 FYIEISVSKIIGKSLDSPVRMWRR 178 >gi|224365672|ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209954196|emb|CAQ77661.1| ribosomal protein S4 [Vitis vinifera] gi|239764730|gb|ACS15201.1| ribosomal protein S4 [Vitis vinifera] Length = 362 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF---LESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ + RG ++ I F LE+R D I R F Sbjct: 67 IQSQTTRKLPLFHGDLPI---------TEMHRGTERNSYILFPLNLETRSDVIPVRLHFC 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 TI ARQ ++HR V VN R V+I + GD+I ++ ++ Sbjct: 118 ETIPQARQPISHRRVCVNNRMVSITHLKVSHGDIISFQENDARI 161 >gi|297741847|emb|CBI33207.3| unnamed protein product [Vitis vinifera] Length = 327 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF---LESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ + RG ++ I F LE+R D I R F Sbjct: 67 IQSQTTRKLPLFHGDLPI---------TEMHRGTERNSYILFPLNLETRSDVIPVRLHFC 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 TI ARQ ++HR V VN R V+I + GD+I ++ ++ Sbjct: 118 ETIPQARQPISHRRVCVNNRMVSITHLKVSHGDIISFQENDARI 161 >gi|255948696|ref|XP_002565115.1| Pc22g11690 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592132|emb|CAP98457.1| Pc22g11690 [Penicillium chrysogenum Wisconsin 54-1255] Length = 457 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +H + LE RLD ++RA F + ARQFV H V VNG+ + SY GD+ +V Sbjct: 114 THMTFAPLERRLDVAIFRALFASSARQARQFVIHGAVTVNGQKMKHPSYLLNPGDLFQV 172 >gi|225444268|ref|XP_002280433.1| PREDICTED: similar to ribosomal protein S4 [Vitis vinifera] Length = 362 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF---LESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ + RG ++ I F LE+R D I R F Sbjct: 67 IQSQTTRKLPLFHGDLPI---------TEMHRGTERNSYILFPLNLETRSDVIPVRLHFC 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 TI ARQ ++HR V VN R V+I + GD+I ++ ++ Sbjct: 118 ETIPQARQPISHRRVCVNNRMVSITHLKVSHGDIISFQENDARI 161 >gi|6172228|dbj|BAA85896.1| ribosomal protein HS4 [Halobacterium salinarum] Length = 169 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 53 RAKQKMKKYYGDISEKKFRS------IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFV 106 R ++++ G +S ++F + I E +R S + LE RL T+VYR Sbjct: 52 RRERQLLGQTGTVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLA 111 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSY 133 T+ ARQFV+H HV V+G V SY Sbjct: 112 NTMGQARQFVSHGHVTVDGSRVTEPSY 138 >gi|11499865|ref|NP_071109.1| 30S ribosomal protein S4 [Archaeoglobus fulgidus DSM 4304] gi|3914900|sp|O28000|RS4_ARCFU RecName: Full=30S ribosomal protein S4P gi|2648246|gb|AAB88980.1| SSU ribosomal protein S4P (rps4P) [Archaeoglobus fulgidus DSM 4304] Length = 172 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%) Query: 63 GDISEKKFRSIFKEADR-------SRGDTSHNLI--SFLESRLDTIVYRAKFVPTIFAAR 113 G+I++ K +++ K+ ++ + D NL FLE RL T+VYR TI AR Sbjct: 69 GEIAKAKAQTVIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYRQGLARTIKQAR 128 Query: 114 QFVNHRHVLVNGRSVNIGSY 133 QF+ H H+ V+GR V S+ Sbjct: 129 QFITHGHIAVDGRRVTSPSF 148 >gi|78102651|gb|ABB21539.1| small ribosomal protein 4 [Plagiochila ericicola] Length = 68 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%) Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV--KQKSKQLAS 152 ARQ VNHRH+ +N V+I SY C+ GD+I + KQKS+ + + Sbjct: 2 GARQLVNHRHISINNDIVDIPSYNCEPGDIITIGNKQKSQSIVT 45 >gi|153799850|gb|ABS50656.1| ribosomal protein S4 [Arabidopsis thaliana] gi|153799852|gb|ABS50657.1| ribosomal protein S4 [Arabidopsis thaliana] Length = 314 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ ++GD+ E R TS+ I F E+R D I R F+ Sbjct: 37 IQLQTTRKLPLFHGDLP-------ITEMHRGTKRTSY--IPFPLNPETRFDVIPLRLHFL 87 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I ++ GD+I ++ Sbjct: 88 ETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQE 126 >gi|13449315|ref|NP_085497.1| ribosomal protein S4 [Arabidopsis thaliana] gi|15226130|ref|NP_178806.1| ribosomal protein S4 (RPS4) [Arabidopsis thaliana] gi|1460051|emb|CAA65380.1| small ribosomal protein 4 [Arabidopsis thaliana] gi|6851017|emb|CAA69772.3| ribosomal protein S4 [Arabidopsis thaliana] gi|20197644|gb|AAM15172.1| hypothetical protein [Arabidopsis thaliana] gi|330251018|gb|AEC06112.1| ribosomal protein S4 [Arabidopsis thaliana] Length = 362 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ ++GD+ E R TS+ I F E+R D I R F+ Sbjct: 67 IQLQTTRKLPLFHGDLP-------ITEMHRGTKRTSY--IPFPLNPETRFDVIPLRLHFL 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I ++ GD+I ++ Sbjct: 118 ETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQE 156 >gi|15790214|ref|NP_280038.1| 30S ribosomal protein S4P [Halobacterium sp. NRC-1] gi|169235943|ref|YP_001689143.1| 30S ribosomal protein S4P [Halobacterium salinarum R1] gi|26399499|sp|Q9HQJ6|RS4_HALSA RecName: Full=30S ribosomal protein S4P gi|226699070|sp|B0R4Y0|RS4_HALS3 RecName: Full=30S ribosomal protein S4P gi|10580672|gb|AAG19518.1| 30S ribosomal protein S4P [Halobacterium sp. NRC-1] gi|167727009|emb|CAP13795.1| ribosomal protein S4 [Halobacterium salinarum R1] Length = 170 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Query: 53 RAKQKMKKYYGDISEKKFRS------IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFV 106 R +++ G +S ++F + I E +R S + LE RL T+VYR Sbjct: 53 REARRLLGQTGTVSGEEFVARLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLA 112 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSY 133 T+ ARQFV+H HV V+G V SY Sbjct: 113 NTMGQARQFVSHGHVTVDGSRVTEPSY 139 >gi|307352910|ref|YP_003893961.1| 30S ribosomal protein S4 [Methanoplanus petrolearius DSM 11571] gi|307156143|gb|ADN35523.1| ribosomal protein S4 [Methanoplanus petrolearius DSM 11571] Length = 182 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 LE RL TIVYR + ARQF+ H H+ VNGR + I YR + Sbjct: 106 LERRLQTIVYRKGLARSPKQARQFITHGHIAVNGRKLTIPGYRVR 150 >gi|119196147|ref|XP_001248677.1| hypothetical protein CIMG_02448 [Coccidioides immitis RS] gi|303321920|ref|XP_003070954.1| S4 domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240110651|gb|EER28809.1| S4 domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 463 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 79 RSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 RS T + ++F LE RLD ++RA F + ARQFV H V VNG+ + Y Sbjct: 114 RSLPPTPYMQMTFAPLERRLDVAIFRAMFASSTRQARQFVVHGAVTVNGKKMQYPGYLLN 173 Query: 137 EGDVIEV 143 GD+ +V Sbjct: 174 PGDLFQV 180 >gi|320040475|gb|EFW22408.1| 30S ribosomal subunit S4 [Coccidioides posadasii str. Silveira] Length = 463 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 79 RSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 RS T + ++F LE RLD ++RA F + ARQFV H V VNG+ + Y Sbjct: 114 RSLPPTPYMQMTFAPLERRLDVAIFRAMFASSTRQARQFVVHGAVTVNGKKMQYPGYLLN 173 Query: 137 EGDVIEV 143 GD+ +V Sbjct: 174 PGDLFQV 180 >gi|327400270|ref|YP_004341109.1| 30S ribosomal protein S4 [Archaeoglobus veneficus SNP6] gi|327315778|gb|AEA46394.1| ribosomal protein S4 [Archaeoglobus veneficus SNP6] Length = 179 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%) Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADR----SRGDTSHNLIS-----FLESRLDTIVYR 102 L AK M G+ ++ K + + K+ R S G T ++++ FLE RL T+VYR Sbjct: 58 LLAKVDMPGREGEYAKAKAQMVIKKLIRMGVLSEGATLDDILNLSVEDFLERRLQTMVYR 117 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 TI ARQ + H H+ V+GR V Y Sbjct: 118 QGLANTIKQARQLIVHGHIAVDGRRVTAPGY 148 >gi|212538099|ref|XP_002149205.1| 30S ribosomal subunit S4, putative [Penicillium marneffei ATCC 18224] gi|210068947|gb|EEA23038.1| 30S ribosomal subunit S4, putative [Penicillium marneffei ATCC 18224] Length = 439 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V+ Sbjct: 120 LERRLDVAIFRAMFASSTRQARQFVVHGAVTVNGKKMQFPGYLLNPGDLFQVE 172 >gi|242807612|ref|XP_002484992.1| 30S ribosomal subunit S4, putative [Talaromyces stipitatus ATCC 10500] gi|218715617|gb|EED15039.1| 30S ribosomal subunit S4, putative [Talaromyces stipitatus ATCC 10500] Length = 443 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V+ Sbjct: 120 LERRLDVAIFRAMFASSTRQARQFVVHGAVTVNGKKMQFPGYLLNPGDLFQVE 172 >gi|327311847|ref|YP_004338744.1| 30S ribosomal protein S4 [Thermoproteus uzoniensis 768-20] gi|326948326|gb|AEA13432.1| ribosomal protein S4 [Thermoproteus uzoniensis 768-20] Length = 171 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 S ++ + LE RL TIVYR F T + ARQ + H H+ +NGR V Sbjct: 97 SLDVRAILERRLQTIVYRKGFAKTPYQARQLITHGHIAINGRRV 140 >gi|303244310|ref|ZP_07330647.1| ribosomal protein S4 [Methanothermococcus okinawensis IH1] gi|302485437|gb|EFL48364.1| ribosomal protein S4 [Methanothermococcus okinawensis IH1] Length = 177 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 11/109 (10%) Query: 68 KKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 K++ + KE D S D S N+ S L RL T+V+R T ARQF+ H H+ VNGR Sbjct: 78 KRYGILIKE-DASLDDVLSLNVESILNRRLQTLVFRKGLAKTPKQARQFIVHGHIAVNGR 136 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYIS-VNHDN 174 V SY V + L + + S LA PE + V+ DN Sbjct: 137 RVTSPSYL--------VPSDEEDLITYMPTSPLASESHPERTNVVSEDN 177 >gi|115278556|ref|YP_762343.1| ribosomal protein S4 [Sorghum bicolor] gi|114309677|gb|ABI60894.1| ribosomal protein S4 [Sorghum bicolor] Length = 383 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +K R R TS+ I FL E+R D I R +F T+ A Sbjct: 59 RKLSLYYGDLPIRKM-------HRGRERTSY--IPFLLNQETRSDVIPVRLRFSDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I ++ GD+I K+ Sbjct: 110 RQPISHRRVCLNNGLVTITHFKVSHGDLISFKE 142 >gi|48478292|ref|YP_023998.1| 30S ribosomal protein S4P [Picrophilus torridus DSM 9790] gi|61215561|sp|Q6KZP7|RS4_PICTO RecName: Full=30S ribosomal protein S4P gi|48430940|gb|AAT43805.1| small subunit ribosomal protein S4P [Picrophilus torridus DSM 9790] Length = 183 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 30/49 (61%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 S N+ LE RL+T+VY+ T+ ARQF+ H H+ VN R V I S+ Sbjct: 97 SLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSF 145 >gi|147919300|ref|YP_686964.1| 30S ribosomal protein S4P [uncultured methanogenic archaeon RC-I] gi|121685291|sp|Q0W1V5|RS4_UNCMA RecName: Full=30S ribosomal protein S4P gi|110622360|emb|CAJ37638.1| 30S ribosomal protein S4P [uncultured methanogenic archaeon RC-I] Length = 205 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 I KE + + + +E RL TI+YR F +I ARQF+ H H+ +NGR + + Sbjct: 88 GILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVP 147 Query: 132 SY 133 Y Sbjct: 148 GY 149 >gi|70991196|ref|XP_750447.1| 30S ribosomal subunit S4 [Aspergillus fumigatus Af293] gi|66848079|gb|EAL88409.1| 30S ribosomal subunit S4, putative [Aspergillus fumigatus Af293] gi|159130921|gb|EDP56034.1| 30S ribosomal subunit S4, putative [Aspergillus fumigatus A1163] Length = 469 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T + ++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 117 TPYTQMTFAPLERRLDVAIFRAMFASSTRQARQFVVHGAVTVNGKKMRYPGYLLNPGDLF 176 Query: 142 EVK 144 +V+ Sbjct: 177 QVE 179 >gi|19113342|ref|NP_596550.1| mitochondrial ribosomal protein subunit S4 [Schizosaccharomyces pombe 972h-] gi|48474754|sp|O60063|YBB1_SCHPO RecName: Full=Putative 40S ribosomal protein S4-like gi|3080526|emb|CAA18654.1| mitochondrial ribosomal protein subunit S4 [Schizosaccharomyces pombe] Length = 327 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 +FLESRLD ++RA F + ARQ V H V VNG+ + GD++ V QKS Sbjct: 92 AFLESRLDMSIHRALFASSALQARQLVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKS 149 >gi|134076525|emb|CAK39720.1| unnamed protein product [Aspergillus niger] Length = 436 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 22/121 (18%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFK-------------------EADRSRGDTS 85 ++F + AK + Y+G+ +SEK + +F +AD+ Sbjct: 38 THFQQKWDAKSIARGYHGEQVSEKHWVRMFSPRIRSVVPMDPAKLAKDDADADQLERPFP 97 Query: 86 HNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 + +F LE RLD V+RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 98 YTQATFAPLERRLDVAVFRAMFASSTRQARQFVIHGAVTVNGKKMRYPGYLLNPGDLFQV 157 Query: 144 K 144 + Sbjct: 158 E 158 >gi|317030176|ref|XP_001392029.2| S4 domain containing protein [Aspergillus niger CBS 513.88] Length = 465 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 LE RLD V+RA F + ARQFV H V VNG+ + Y GD+ +V+ Sbjct: 135 LERRLDVAVFRAMFASSTRQARQFVIHGAVTVNGKKMRYPGYLLNPGDLFQVE 187 >gi|119496387|ref|XP_001264967.1| 30S ribosomal subunit S4, putative [Neosartorya fischeri NRRL 181] gi|119413129|gb|EAW23070.1| 30S ribosomal subunit S4, putative [Neosartorya fischeri NRRL 181] Length = 469 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T + ++F LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ Sbjct: 117 TPYTQMTFAPLERRLDVAIFRAMFASSTRQARQFVVHGAVTVNGKKMRYPGYLLNPGDLF 176 Query: 142 EVK 144 +V+ Sbjct: 177 QVE 179 >gi|225682980|gb|EEH21264.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 513 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 123 LERRLDVAIFRAMFASSTRQARQFVLHGSVTVNGKKMKYPGYLLNPGDLFQV 174 >gi|150399382|ref|YP_001323149.1| 30S ribosomal protein S4P [Methanococcus vannielii SB] gi|171460838|sp|A6UPW5|RS4_METVS RecName: Full=30S ribosomal protein S4P gi|150012085|gb|ABR54537.1| ribosomal protein S4 [Methanococcus vannielii SB] Length = 178 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 28/49 (57%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 S N+ S LE RL T+VYR T ARQ + H H+ VNGR V SY Sbjct: 95 SLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSY 143 >gi|226290430|gb|EEH45914.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 512 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 123 LERRLDVAIFRAMFASSTRQARQFVLHGSVTVNGKKMKYPGYLLNPGDLFQV 174 >gi|115388607|ref|XP_001211809.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195893|gb|EAU37593.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 457 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 77 ADRSRGDTSHNLISF-------LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 A+ +G ++ L F LE RLD ++RA F + ARQFV H V VNG+ + Sbjct: 102 ANADQGRSAGRLTPFTQMTFAPLERRLDVAIFRAMFASSARQARQFVVHGAVTVNGKKMR 161 Query: 130 IGSYRCKEGDVIEVK 144 Y GD+ +V+ Sbjct: 162 YPGYLLNPGDMFQVE 176 >gi|67537988|ref|XP_662768.1| hypothetical protein AN5164.2 [Aspergillus nidulans FGSC A4] gi|40743155|gb|EAA62345.1| hypothetical protein AN5164.2 [Aspergillus nidulans FGSC A4] gi|259484618|tpe|CBF80996.1| TPA: 30S ribosomal subunit S4, putative (AFU_orthologue; AFUA_1G06980) [Aspergillus nidulans FGSC A4] Length = 457 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 81 RGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 R T + ++F LE RLD ++RA F + ARQFV H V VNG+ + Y G Sbjct: 110 RTKTPYTNMTFAPLERRLDVAIFRALFASSARQARQFVLHGAVTVNGKKMRYPGYLLNPG 169 Query: 139 DVIEV 143 D+ +V Sbjct: 170 DMFQV 174 >gi|218176246|ref|YP_002364503.1| ribosomal protein S4 [Festuca arundinacea] gi|215882330|gb|ACJ70760.1| ribosomal protein S4 [Festuca arundinacea] Length = 144 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G P T G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLG----ALPGLTRKTPKSGSNLKNKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH-R 119 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ V R Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVKPIR 115 Query: 120 HVL 122 H+L Sbjct: 116 HIL 118 >gi|154293126|ref|XP_001547113.1| hypothetical protein BC1G_14515 [Botryotinia fuckeliana B05.10] gi|150845660|gb|EDN20853.1| hypothetical protein BC1G_14515 [Botryotinia fuckeliana B05.10] Length = 423 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +E RLDT ++RA F + ARQFV H V VNG+ ++ Y GD+ +V Sbjct: 122 IERRLDTAIFRALFASSARQARQFVVHGKVKVNGKKMSYPGYLLNPGDMFQV 173 >gi|124027413|ref|YP_001012733.1| 30S ribosomal protein S4P [Hyperthermus butylicus DSM 5456] gi|152060953|sp|A2BK77|RS4_HYPBU RecName: Full=30S ribosomal protein S4P gi|123978107|gb|ABM80388.1| 30S ribosomal protein S4p [Hyperthermus butylicus DSM 5456] Length = 176 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 83 DTSHNLIS--FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK--EG 138 D NL + FLE RL TIVY+ TI+ ARQ + H H+ + GR + Y K E Sbjct: 90 DDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEE 149 Query: 139 DVIE 142 D+++ Sbjct: 150 DLVD 153 >gi|258569883|ref|XP_002543745.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237904015|gb|EEP78416.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 467 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 129 LERRLDVAIFRALFASSTRQARQFVVHGWVTVNGKKMQYPGYLLNPGDLFQV 180 >gi|238489961|ref|XP_002376218.1| 30S ribosomal subunit S4, putative [Aspergillus flavus NRRL3357] gi|220698606|gb|EED54946.1| 30S ribosomal subunit S4, putative [Aspergillus flavus NRRL3357] Length = 455 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 118 LERRLDVAIFRAMFASSARQARQFVVHGAVTVNGKQMRYPGYLLNPGDLFQV 169 >gi|3025872|gb|AAC26507.1| ribosomal protein S4 [Brassica napus] Length = 362 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +QL+ +K+ ++GD+ E R TS+ I F E+R D I R F+ Sbjct: 67 IQLQTTRKLPLFHGDLP-------ITEMHRGTKRTSY--IPFPLNPETRFDVIPLRLHFL 117 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I + GD+I ++ Sbjct: 118 ETIPQARQPISHRRVCVNKGMVSITHLKLSHGDIISFQE 156 >gi|121702393|ref|XP_001269461.1| 30S ribosomal subunit S4, putative [Aspergillus clavatus NRRL 1] gi|119397604|gb|EAW08035.1| 30S ribosomal subunit S4, putative [Aspergillus clavatus NRRL 1] Length = 464 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 77 ADRSRGDTSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 +D T ++F LE RLD ++RA F + ARQFV H V VNG+ + Y Sbjct: 105 SDSKSSTTPFTQMTFAPLERRLDVAIFRAMFASSARQARQFVVHGAVTVNGKKMRYPGYL 164 Query: 135 CKEGDVIEVK 144 GD+ +V+ Sbjct: 165 LNPGDLFQVE 174 >gi|169763980|ref|XP_001727890.1| S4 domain containing protein [Aspergillus oryzae RIB40] gi|83770918|dbj|BAE61051.1| unnamed protein product [Aspergillus oryzae] Length = 455 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 118 LERRLDVAIFRAMFASSARQARQFVVHGAVTVNGKQMRYPGYLLNPGDLFQV 169 >gi|284162136|ref|YP_003400759.1| ribosomal protein S4 [Archaeoglobus profundus DSM 5631] gi|284012133|gb|ADB58086.1| ribosomal protein S4 [Archaeoglobus profundus DSM 5631] Length = 169 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+VYR TI ARQ + H H+ ++GR V SY Sbjct: 105 DFLERRLQTVVYRQGLARTIKQARQLITHGHIAIDGRRVTSPSY 148 >gi|291498623|gb|ADE08097.1| rps4-1 [Triticum aestivum] gi|291498624|gb|ADE08098.1| rps4-2 [Triticum aestivum] Length = 357 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +E R R TS+ I FL E+R D I R F T+ A Sbjct: 59 RKLSLYYGDLP-------IREMHRGRERTSY--IPFLLNQETRSDVIPVRLHFSDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I + GD+I K+ Sbjct: 110 RQPISHRRVCLNNGLVTITHLKVSHGDLISFKE 142 >gi|261193076|ref|XP_002622944.1| 30S ribosomal subunit S4 [Ajellomyces dermatitidis SLH14081] gi|239589079|gb|EEQ71722.1| 30S ribosomal subunit S4 [Ajellomyces dermatitidis SLH14081] gi|327352581|gb|EGE81438.1| 30S ribosomal subunit S4 [Ajellomyces dermatitidis ATCC 18188] Length = 498 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T H ++F LE RLD ++RA F + ARQFV H V VNG + Y GD+ Sbjct: 113 TPHMQMTFAPLERRLDVAIFRAMFASSTRQARQFVVHGFVTVNGTKMRHPGYLLNPGDLF 172 Query: 142 EV 143 +V Sbjct: 173 QV 174 >gi|239613660|gb|EEQ90647.1| 30S ribosomal subunit S4 [Ajellomyces dermatitidis ER-3] Length = 498 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 84 TSHNLISF--LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 T H ++F LE RLD ++RA F + ARQFV H V VNG + Y GD+ Sbjct: 113 TPHMQMTFAPLERRLDVAIFRAMFASSTRQARQFVVHGFVTVNGTKMRHPGYLLNPGDLF 172 Query: 142 EV 143 +V Sbjct: 173 QV 174 >gi|89280731|ref|YP_514660.1| ribosomal protein S4 [Oryza sativa Indica Group] gi|289065037|ref|YP_003433848.1| ribosomal protein small subunit 4 [Oryza rufipogon] gi|3025870|gb|AAC26506.1| ribosomal protein S4 [Oryza sativa] gi|74100098|gb|AAZ99262.1| ribosomal protein S4 [Oryza sativa Indica Group] gi|74100153|gb|AAZ99316.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|74100207|gb|AAZ99369.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|285026119|dbj|BAI67952.1| ribosomal protein small subunit 4 [Oryza rufipogon] gi|285026169|dbj|BAI68001.1| ribosomal protein small subunit 4 [Oryza sativa Indica Group] Length = 352 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +E R R TS+ I FL E+R D I R F T+ A Sbjct: 59 RKLSLYYGDLP-------IREMHRGRERTSY--IPFLLNQETRSDVIPVRLHFCDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I + GD+I ++ Sbjct: 110 RQPISHRRVCLNNGLVTITHLKVSHGDLISFQE 142 >gi|296243121|ref|YP_003650608.1| 30S ribosomal protein S4P [Thermosphaera aggregans DSM 11486] gi|296095705|gb|ADG91656.1| SSU ribosomal protein S4P [Thermosphaera aggregans DSM 11486] Length = 173 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + KE R + + LE RL TIVY+ TI+ ARQ + H H+ V GR + Sbjct: 81 GLLKEGSRLEDALNLKVEDLLERRLQTIVYKKGLANTIYQARQLIVHGHIAVAGRRITSP 140 Query: 132 SY 133 Y Sbjct: 141 GY 142 >gi|322369536|ref|ZP_08044101.1| 30S ribosomal protein S4P [Haladaptatus paucihalophilus DX253] gi|320551268|gb|EFW92917.1| 30S ribosomal protein S4P [Haladaptatus paucihalophilus DX253] Length = 173 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 ++ LE RL T+ YR T ARQF+ H HV V+G+ V++ SY+ + Sbjct: 96 DITDVLERRLQTVAYRKGLAHTPKQARQFITHGHVTVDGQRVSVPSYKVE 145 >gi|20094908|ref|NP_614755.1| 30S ribosomal protein S4 [Methanopyrus kandleri AV19] gi|26399409|sp|Q8TVC0|RS4_METKA RecName: Full=30S ribosomal protein S4P gi|19888144|gb|AAM02685.1| Ribosomal protein related to S4 [Methanopyrus kandleri AV19] Length = 186 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVYR T ARQ V HRH+ + R V + SY Sbjct: 102 DVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSY 145 >gi|297618743|ref|YP_003706848.1| ribosomal protein S4 [Methanococcus voltae A3] gi|297377720|gb|ADI35875.1| ribosomal protein S4 [Methanococcus voltae A3] Length = 177 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVI 141 S N+ + L+ RL TIVY T ARQF+ H H+ VNGR V+ SY +E D I Sbjct: 95 SLNIENILDRRLQTIVYEKGLARTPKQARQFIVHGHIAVNGRKVSSPSYLVELEESDAI 153 >gi|156034805|ref|XP_001585821.1| hypothetical protein SS1G_13338 [Sclerotinia sclerotiorum 1980] gi|154698741|gb|EDN98479.1| hypothetical protein SS1G_13338 [Sclerotinia sclerotiorum 1980 UF-70] Length = 425 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +E RLDT ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 123 IERRLDTAIFRALFASSTRQARQFVVHGKVKVNGKKMPYPGYLLNPGDMFQV 174 >gi|81176536|ref|YP_398420.1| rps4 [Triticum aestivum] gi|78675260|dbj|BAE47685.1| rps4 [Triticum aestivum] gi|169649069|gb|ACA62630.1| rps4 [Triticum aestivum] Length = 357 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ YYGD+ +E R R TS+ I FL E+R D I R F T+ A Sbjct: 59 RKLSLYYGDLP-------IREMHRGRELTSY--IPFLLNQETRSDVIPVRLHFSDTLPQA 109 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 RQ ++HR V +N V I + GD+I K+ Sbjct: 110 RQPISHRRVCLNNGLVTITHLKVSHGDLISFKE 142 >gi|41615041|ref|NP_963539.1| 30S ribosomal protein S4P [Nanoarchaeum equitans Kin4-M] gi|61215657|sp|Q74NF7|RS4_NANEQ RecName: Full=30S ribosomal protein S4P gi|40068765|gb|AAR39100.1| NEQ247 [Nanoarchaeum equitans Kin4-M] Length = 180 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 10/89 (11%) Query: 64 DISEKKFRSIFKE------ADRSRGDTSHNLI--SFLESRLDTIVYRAKFVPTIFAARQF 115 DISE+K R + K ++ + D +L LE RL T++ R T+ ARQF Sbjct: 64 DISEEKERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQF 123 Query: 116 VNHRHVLVNGRSVNIGSYRCK--EGDVIE 142 + H H++VNG V+ SY K E D IE Sbjct: 124 IVHGHIMVNGEVVDAPSYLVKKEEEDKIE 152 >gi|15922390|ref|NP_378059.1| 30S ribosomal protein S4P [Sulfolobus tokodaii str. 7] gi|26399447|sp|Q96YV8|RS4_SULTO RecName: Full=30S ribosomal protein S4P gi|15623179|dbj|BAB67168.1| 177aa long hypothetical 30S ribosomal protein S4 [Sulfolobus tokodaii str. 7] Length = 177 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 67 EKKFRSIFKEADRSRGD--TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 +K +R E D + D N ++LE RL TIVY+ TI+ ARQ + H H+ + Sbjct: 75 QKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIG 134 Query: 125 GRSVNIGSYRCKEGD 139 GR V Y G+ Sbjct: 135 GRRVTSPGYIVMRGE 149 >gi|15897040|ref|NP_341645.1| 30S ribosomal protein S4P [Sulfolobus solfataricus P2] gi|284173384|ref|ZP_06387353.1| 30S ribosomal protein S4P [Sulfolobus solfataricus 98/2] gi|2500401|sp|P95987|RS4_SULSO RecName: Full=30S ribosomal protein S4P gi|1707821|emb|CAA69529.1| ribosomal protein S4 [Sulfolobus solfataricus P2] gi|13813205|gb|AAK40435.1| SSU ribosomal protein S4AB (rps4AB) [Sulfolobus solfataricus P2] gi|261601694|gb|ACX91297.1| ribosomal protein S4 [Sulfolobus solfataricus 98/2] Length = 181 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVY+ TI+ ARQ + H H+ VNG+ V Y Sbjct: 101 LLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGY 143 >gi|257053587|ref|YP_003131420.1| 30S ribosomal protein S4P [Halorhabdus utahensis DSM 12940] gi|256692350|gb|ACV12687.1| ribosomal protein S4 [Halorhabdus utahensis DSM 12940] Length = 169 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 3/100 (3%) Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+ K I E D S ++ LE RL T+ YR T ARQF++H HV V+ Sbjct: 71 IARLKRYGILDEGDALDDVLSLDVTDVLERRLQTVAYRKGLANTAQQARQFISHGHVTVD 130 Query: 125 GRSVNIGS--YRCKEGDVIEVKQKSKQLASVLEASQLAER 162 G V+I S +E IE + S LA L + ER Sbjct: 131 GERVSIPSKTVAVEEEGAIEFDENSP-LADDLHPERAEER 169 >gi|295658597|ref|XP_002789859.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226283003|gb|EEH38569.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 453 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 165 LERRLDVAIFRAMFASSTRQARQFVLHGSVTVNGKKMKHPGYLLNPGDLFQV 216 >gi|237688497|ref|YP_002905116.1| ribosomal protein S4 [Picea sitchensis] gi|226875325|gb|ACO89064.1| ribosomal protein S4 [Picea sitchensis] Length = 201 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 34 PGLHGQRRKS-----------KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRG 82 PGL +R K+ K S + ++ KQK++ +YG ++E++ + A R++G Sbjct: 19 PGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQKLRFHYG-LTERQLLKYVRIARRAKG 77 Query: 83 DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 T NH H+ VN V+I SY CK DVI Sbjct: 78 STGQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHVHIRVNDHMVDIPSYPCKPQDVIT 137 Query: 143 VKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPSSLKDVPYPVI-MQPNLV 200 ++ + + A + + L +RD +P +++ H F+ + + D + + + LV Sbjct: 138 IRDQQRLRAIIRKNLDLFQRDKLPNHLTF-HSLQYKGFI---NQIIDSKWISLKINELLV 193 Query: 201 VEFYSR 206 VE+YSR Sbjct: 194 VEYYSR 199 >gi|307594976|ref|YP_003901293.1| 30S ribosomal protein S4 [Vulcanisaeta distributa DSM 14429] gi|307550177|gb|ADN50242.1| ribosomal protein S4 [Vulcanisaeta distributa DSM 14429] Length = 182 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 S ++ + L+ RL TIVYR TI+ ARQ V H H+ V+GR V Y Sbjct: 97 SLDVRAVLDRRLQTIVYRKGLARTIYEARQLVTHGHIAVDGRVVRSPGY 145 >gi|116196236|ref|XP_001223930.1| hypothetical protein CHGG_04716 [Chaetomium globosum CBS 148.51] gi|88180629|gb|EAQ88097.1| hypothetical protein CHGG_04716 [Chaetomium globosum CBS 148.51] Length = 382 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 + + +E RLD ++RA F + ARQFV H V VNG+ + Y GD+ +V+ Sbjct: 49 MFAPMERRLDIAIFRALFASSARQARQFVLHGAVTVNGKKMTYPGYLLNPGDMFQVE 105 >gi|156936976|ref|YP_001434772.1| 30S ribosomal protein S4P [Ignicoccus hospitalis KIN4/I] gi|172044459|sp|A8A8W3|RS4_IGNH4 RecName: Full=30S ribosomal protein S4P gi|156565960|gb|ABU81365.1| SSU ribosomal protein S4P [Ignicoccus hospitalis KIN4/I] Length = 166 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+VY+ +I+ ARQ V H H+ +NGR V Y Sbjct: 99 DLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGY 142 >gi|325969209|ref|YP_004245401.1| 30S ribosomal protein S4 [Vulcanisaeta moutnovskia 768-28] gi|323708412|gb|ADY01899.1| 30S ribosomal protein S4 [Vulcanisaeta moutnovskia 768-28] Length = 179 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 S ++ + L+ RL +IVYR TI+ ARQ V H H+ V+GR V Y G Sbjct: 97 SLDVRAILDRRLQSIVYRRGLAKTIYEARQLVTHGHIAVDGRVVKSPGYLVPRG 150 >gi|57231037|gb|AAW47279.1| ribosomal protein S4 [Amborella trichopoda] Length = 321 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 21/146 (14%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLD 97 RK+ SY LQ +K+ ++GD+ E R TS+ I F E+R D Sbjct: 43 RKNLNSYIKLQ--TTRKLSLFHGDLP-------ITEMHRGTERTSY--IPFPLNPETRSD 91 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 I R F T+ ARQ ++HR + VN V+I + GD+I +K+ + + Sbjct: 92 VIPVRLHFRETLPQARQPISHRRLCVNNGMVSITRLKVSHGDLISLKENYAR-------T 144 Query: 158 QLAERDVPEYISVNHDNMVATFVRIP 183 + ER YI ++ + M+ F+ P Sbjct: 145 RGEERRRSFYIEISVEKMIGKFLDHP 170 >gi|331252013|ref|XP_003338582.1| hypothetical protein PGTG_20023 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309317572|gb|EFP94163.1| hypothetical protein PGTG_20023 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 399 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 22/135 (16%) Query: 30 RSYGPGLHGQR--RKSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKEAD-------- 78 RS+GP R SK Y+ + R+K + Y+GD I EKKF+ + A Sbjct: 30 RSFGPENKDTNFLRSSKTVYWQ-KWRSKAVTRAYHGDWIQEKKFKRHYLPASLPALAVKS 88 Query: 79 ---RSRGDTSHNLISF-------LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +SR + LE RLD ++R+ F +++ AR+ V H V +NG Sbjct: 89 SLKKSRYGNREEKVPLAALMYQELERRLDVAIFRSCFADSVYEARRIVIHGAVKLNGVKC 148 Query: 129 NIGSYRCKEGDVIEV 143 N R GD+ V Sbjct: 149 NAPWTRLHPGDMFTV 163 >gi|164422223|gb|ABY55196.1| ribosomal protein S4 [Bambusa oldhamii] Length = 344 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 12/95 (12%) Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIF 110 +K+ YYGD+ + E R R TS+ I FL E+R D I R F T+ Sbjct: 57 TTRKLSLYYGDLPRR-------EMHRGRERTSY--IPFLLNQETRSDVIPVRLHFSDTLP 107 Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 ARQ ++HR V +N V I + GD+I ++ Sbjct: 108 QARQPISHRRVCLNNGLVTITHLKVSHGDLISFQE 142 >gi|298674773|ref|YP_003726523.1| 30S ribosomal protein S4 [Methanohalobium evestigatum Z-7303] gi|298287761|gb|ADI73727.1| ribosomal protein S4 [Methanohalobium evestigatum Z-7303] Length = 184 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + LE RL T V++ T+ ARQF+ H H+ VNGR V + S Sbjct: 104 AILERRLQTQVHKLGLARTLLQARQFITHGHIAVNGRKVTVPS 146 >gi|282164926|ref|YP_003357311.1| 30S ribosomal protein S4P [Methanocella paludicola SANAE] gi|282157240|dbj|BAI62328.1| 30S ribosomal protein S4P [Methanocella paludicola SANAE] Length = 208 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + KE + + + LE +L TIV+R + ++ ARQF+ H HV +NGR + + Sbjct: 88 GVLKEDSKLEDILALKVEDLLERQLQTIVFRKGYANSMKQARQFIVHGHVSLNGRKITVP 147 Query: 132 SY 133 SY Sbjct: 148 SY 149 >gi|150866939|ref|XP_001386705.2| hypothetical protein PICST_50481 [Scheffersomyces stipitis CBS 6054] gi|149388195|gb|ABN68676.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 471 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 15/113 (13%) Query: 54 AKQKMKKYYGD-ISEKKFRSIFKEADRSRGDTSHNL--------------ISFLESRLDT 98 AK + + Y+G+ ++EK++++IF + + +L + LE RL+ Sbjct: 48 AKAETRAYHGEHLTEKRWKAIFDPSLETVAQLDASLKGSKVAPTPMTLQTYASLEKRLEL 107 Query: 99 IVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 V+R+ F ++ AR+F+ V VNG + S+ K GD+ VK + LA Sbjct: 108 AVFRSMFASSVRQAREFILGGSVSVNGVVIKHPSFPLKSGDIFHVKPEKVLLA 160 >gi|323649909|ref|YP_004237282.1| ribosomal protein S4 [Ricinus communis] gi|322394289|gb|ADW96046.1| ribosomal protein S4 [Ricinus communis] Length = 352 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 12/98 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ + RG + I FL E+R D I R F Sbjct: 57 IQSQTTRKLPLFHGDLPI---------TEMHRGTERTSYIPFLLNPETRSDVIPVRLHFC 107 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 TI ARQ ++HR V VN V+I + GD+I K Sbjct: 108 ETIPQARQPISHRRVCVNNGMVSITHLKVSHGDIISFK 145 >gi|76802057|ref|YP_327065.1| 30S ribosomal protein S4P [Natronomonas pharaonis DSM 2160] gi|90101697|sp|Q3IQT8|RS4_NATPD RecName: Full=30S ribosomal protein S4P gi|76557922|emb|CAI49506.1| ribosomal protein S4 [Natronomonas pharaonis DSM 2160] Length = 174 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR---CKEGDV 140 S ++ LE RL T+ YR T ARQF+ H HV VNG V+ SY+ +EG++ Sbjct: 96 SLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEI 154 >gi|328850294|gb|EGF99460.1| hypothetical protein MELLADRAFT_40240 [Melampsora larici-populina 98AG31] Length = 335 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 30 RSYGPGLHGQR--RKSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKEAD-------- 78 R+YGP R SK Y+ + +++ + Y+GD I EKKF+ + A Sbjct: 30 RTYGPESKETNFTRTSKTVYWQ-RCKSRAVTRAYHGDWIQEKKFKRHYLPASLPKLSIQP 88 Query: 79 ----------RSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 S+ + + + +E RLD +++R+ F +++ AR+ V H V +NG Sbjct: 89 YQKINKSNPQESKVPLAAMMYTEVERRLDVVLFRSCFADSVYEARRMVLHNAVKLNGVRC 148 Query: 129 NIGSYRCKEGDVIEVKQKS-------KQLASVLEASQLAERDVPEYISVNHDNMVATFVR 181 R GD+I V S K + L + + + D P+ S + + T + Sbjct: 149 IAPWTRLHPGDMITVHPASIPLLNPGKTWPAGLGEAYVVDIDTPKKPS--EPSPITTSLH 206 Query: 182 IPSSLKDVPYPVI-MQPNLVVEF 203 +P L P + + P L V F Sbjct: 207 LPFRLPAYASPFLFIPPYLEVSF 229 >gi|219852959|ref|YP_002467391.1| 30S ribosomal protein S4P [Methanosphaerula palustris E1-9c] gi|254764598|sp|B8GEG7|RS4_METPE RecName: Full=30S ribosomal protein S4P gi|219547218|gb|ACL17668.1| ribosomal protein S4 [Methanosphaerula palustris E1-9c] Length = 181 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 8/80 (10%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 LE RL T+VYR + ARQ V H H+ + GR V+I SYR V + + L Sbjct: 106 LERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYR--------VPRDQETLI 157 Query: 152 SVLEASQLAERDVPEYISVN 171 S S L PE +N Sbjct: 158 SYYGTSPLTSEGHPEIERIN 177 >gi|300711113|ref|YP_003736927.1| 30S ribosomal protein S4P [Halalkalicoccus jeotgali B3] gi|299124796|gb|ADJ15135.1| 30S ribosomal protein S4P [Halalkalicoccus jeotgali B3] Length = 174 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 S + LE RL T+ YR T ARQF+ H HV V+G+ V + SY ++EV Sbjct: 96 SLEVTDLLERRLQTVAYRKGVGNTPKQARQFIAHGHVTVDGQRVTVPSY------MVEVS 149 Query: 145 QKSKQLASVLEASQLAERDVPE 166 Q+ S E S LA+ PE Sbjct: 150 QEDS--VSFDENSPLADELHPE 169 >gi|242223228|ref|XP_002477270.1| predicted protein [Postia placenta Mad-698-R] gi|220723290|gb|EED77530.1| predicted protein [Postia placenta Mad-698-R] Length = 345 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%) Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 D ++K+ + + E ++ + +E R+D +++RA F +++ AR+ V H VL+ Sbjct: 105 DAAQKEAKRLQNEREKGLAPVGSLMFREVERRIDVLLFRACFAHSVYEARRMVVHGDVLL 164 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKS 147 NG+ + R GD+ V K+ Sbjct: 165 NGKKHTNPNTRLAPGDMFSVDPKA 188 >gi|171690318|ref|XP_001910084.1| hypothetical protein [Podospora anserina S mat+] gi|170945107|emb|CAP71218.1| unnamed protein product [Podospora anserina S mat+] Length = 449 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 71 RSIFKEADRSRGDTSHNLISFL--ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 +++ + + G T + ++F E RLD V+RA F + ARQFV H V VNG+ + Sbjct: 111 KNVARNTGNAEGMTPYMQMTFAPQERRLDISVFRALFASSARQARQFVIHGAVKVNGKKM 170 Query: 129 NIGSYRCKEGDVIEVKQKSKQLAS 152 Y GD+ +V + +A+ Sbjct: 171 QHPGYLLNPGDLFQVDPEKVMIAT 194 >gi|238879875|gb|EEQ43513.1| conserved hypothetical protein [Candida albicans WO-1] Length = 461 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 21/124 (16%) Query: 41 RKSKPSYFGLQL-----RAKQKMKKYYGD-ISEKKFRSI--------FKEADRS-RG-DT 84 RK YFG L AK + + Y+G I EK+F+++ + + D S +G D Sbjct: 30 RKDPLQYFGKTLYQQKWAAKTETRNYHGQQIKEKRFKNVLFDSNLKTYSQLDASLKGHDV 89 Query: 85 SHNLISF-----LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 + I+ LE RL+ ++R+ F ++ ARQF+ +V VNG + S+ + GD Sbjct: 90 APTPITLQTYGTLEKRLEIALFRSMFASSVRQARQFILGGYVKVNGVVIKHPSFPLQSGD 149 Query: 140 VIEV 143 V V Sbjct: 150 VFSV 153 >gi|296420306|ref|XP_002839716.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635910|emb|CAZ83907.1| unnamed protein product [Tuber melanosporum] Length = 366 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 36/139 (25%) Query: 43 SKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKEADRS--------------------- 80 S+ ++F + AK +++ Y+G+ ++ +++++IF+ ++ Sbjct: 90 SQKTFFQQKWAAKAEVRHYHGEHLTNRQWQNIFRHTMKASVPMQNTRLAQNNGSDMAMGR 149 Query: 81 ----RGDTSHN----------LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 +GD + L +E RLD V+RA F + ARQFV H V VNG+ Sbjct: 150 GSGLQGDEGYGRVRTVPYMSQLFWPMERRLDMAVHRAMFASSARQARQFVVHGFVKVNGK 209 Query: 127 SVNIGSYRCKEGDVIEVKQ 145 + Y GD+ V Q Sbjct: 210 KMVHPGYMLNPGDMFSVNQ 228 >gi|68476945|ref|XP_717450.1| likely mitochondrial ribosomal protein S4 [Candida albicans SC5314] gi|68477136|ref|XP_717361.1| likely mitochondrial ribosomal protein S4 [Candida albicans SC5314] gi|46439070|gb|EAK98392.1| likely mitochondrial ribosomal protein S4 [Candida albicans SC5314] gi|46439163|gb|EAK98484.1| likely mitochondrial ribosomal protein S4 [Candida albicans SC5314] Length = 461 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 21/124 (16%) Query: 41 RKSKPSYFGLQL-----RAKQKMKKYYGD-ISEKKFRSI--------FKEADRS-RG-DT 84 RK YFG L AK + + Y+G I EK+F+++ + + D S +G D Sbjct: 30 RKDPLQYFGKTLYQQKWAAKTETRNYHGQQIKEKRFKNVLFDSNLKTYSQLDASLKGHDV 89 Query: 85 SHNLISF-----LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 + I+ LE RL+ ++R+ F ++ ARQF+ +V VNG + S+ + GD Sbjct: 90 APTPITLQTYGTLEKRLEIALFRSMFASSVRQARQFILGGYVKVNGVVIKHPSFPLQSGD 149 Query: 140 VIEV 143 V V Sbjct: 150 VFSV 153 >gi|330506854|ref|YP_004383282.1| 30S ribosomal protein S4 [Methanosaeta concilii GP-6] gi|328927662|gb|AEB67464.1| ribosomal protein S4 [Methanosaeta concilii GP-6] Length = 178 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RL T VYR ++ ARQF+ H H+ V+GR V++ Y G+ + + Sbjct: 101 VLERRLQTQVYRQGLANSLKQARQFIVHGHIQVSGRRVDVPGYLVPRGEEMSI 153 >gi|146422017|ref|XP_001486951.1| hypothetical protein PGUG_00328 [Meyerozyma guilliermondii ATCC 6260] gi|146388072|gb|EDK36230.1| hypothetical protein PGUG_00328 [Meyerozyma guilliermondii ATCC 6260] Length = 465 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 20/147 (13%) Query: 46 SYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKEADRSRGDTSHNL--------------IS 90 + F + AK + + Y+G+ ++E +++ +FK S +L + Sbjct: 40 TLFQQKWTAKAETRAYHGEHLTEGRWKQLFKPNLESVAQLDASLKGMDVALTPMPLQTYA 99 Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 LE RL+ ++RA F ++ ARQ++ + +V VNG + S+ K GD+ V + Sbjct: 100 ALEKRLEFAMFRAMFASSVRQARQYILNGYVKVNGVIIKHPSFPLKSGDIFSVIPE---- 155 Query: 151 ASVLEASQLAERDVPEYISVNHDNMVA 177 VL A + V + ISV+ + A Sbjct: 156 -KVLTAMGRTKPSVQKAISVDSTQIAA 181 >gi|241958516|ref|XP_002421977.1| mitochondrial ribosome protein precursor, small subunit [Candida dubliniensis CD36] gi|223645322|emb|CAX39978.1| mitochondrial ribosome protein precursor, small subunit [Candida dubliniensis CD36] Length = 461 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 21/124 (16%) Query: 41 RKSKPSYFGLQL-----RAKQKMKKYYGD-ISEKKFRSI--------FKEADRS-RG-DT 84 RK YFG L AK + + Y+G I EK+F+++ + + D S +G D Sbjct: 30 RKDPLQYFGKTLYQQKWAAKTETRNYHGQQIKEKRFKNVLFDSNLKTYSQLDASLKGHDV 89 Query: 85 SHNLISF-----LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 + I+ LE RL+ ++R+ F ++ ARQF+ +V VNG + S+ + GD Sbjct: 90 APTPITLQTYGTLEKRLEIALFRSMFASSVRQARQFILGGYVKVNGVVIKHPSFPLQSGD 149 Query: 140 VIEV 143 V V Sbjct: 150 VFSV 153 >gi|118431573|ref|NP_148135.2| 30S ribosomal protein S4 [Aeropyrum pernix K1] gi|7388201|sp|Q9YB58|RS4_AERPE RecName: Full=30S ribosomal protein S4P gi|116062898|dbj|BAA80740.2| 30S ribosomal protein S4P [Aeropyrum pernix K1] Length = 171 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 25/47 (53%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 N LE RL TIVY+ TI+ ARQ V H H+ + GR V Y Sbjct: 97 NAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGY 143 >gi|126179744|ref|YP_001047709.1| 30S ribosomal protein S4P [Methanoculleus marisnigri JR1] gi|152112229|sp|A3CWH7|RS4_METMJ RecName: Full=30S ribosomal protein S4P gi|125862538|gb|ABN57727.1| SSU ribosomal protein S4P [Methanoculleus marisnigri JR1] Length = 182 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+ RL T+V R F + ARQF+ H H+ + GR V I YR + + E+ Sbjct: 106 LDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGYRVERAEEAEI 157 >gi|119872421|ref|YP_930428.1| 30S ribosomal protein S4P [Pyrobaculum islandicum DSM 4184] gi|152112252|sp|A1RT03|RS4_PYRIL RecName: Full=30S ribosomal protein S4P gi|119673829|gb|ABL88085.1| SSU ribosomal protein S4P [Pyrobaculum islandicum DSM 4184] Length = 159 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 27/45 (60%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S ++ + LE RL TIVYR +I+ ARQ V H HV V GR V Sbjct: 97 SLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVT 141 >gi|57231021|gb|AAW47271.1| ribosomal protein S4 [Eichhornia crassipes] Length = 311 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 12/89 (13%) Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAA 112 +K+ +YGD+ +E R R TS+ I FL E+R D I R F T+ A Sbjct: 56 RKLPLFYGDLP-------IREMHRGRERTSY--IPFLLNQETRSDVIPVRLHFSDTLPQA 106 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 RQ ++HR V VN V+I ++ GD I Sbjct: 107 RQPISHRRVCVNNGLVSITHFQVSHGDQI 135 >gi|119719176|ref|YP_919671.1| 30S ribosomal protein S4P [Thermofilum pendens Hrk 5] gi|152112271|sp|A1RWT8|RS4_THEPD RecName: Full=30S ribosomal protein S4P gi|119524296|gb|ABL77668.1| SSU ribosomal protein S4P [Thermofilum pendens Hrk 5] Length = 172 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPT 108 L L A++++K +S + D S D S + LE RL TIVYR T Sbjct: 59 LALPAEERIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATT 118 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSY 133 I ARQ + H H+ VN R V Y Sbjct: 119 IRHARQLITHGHIAVNSRRVRSPGY 143 >gi|160331211|ref|XP_001712313.1| rps9 [Hemiselmis andersenii] gi|159765760|gb|ABW97988.1| rps9 [Hemiselmis andersenii] Length = 181 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL TIV++ K +I +R + RH+ V+ R V++ S+ R K D IE KS Sbjct: 104 FLERRLQTIVFKKKLAESIHHSRVLIKQRHISVDKRLVDVPSFLVRLKSQDKIEYFSKS 162 >gi|323149057|ref|YP_004222821.1| ribosomal protein S4 [Vigna radiata] gi|308206763|gb|ADO19900.1| ribosomal protein S4 [Vigna radiata] Length = 346 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSH-NLISFLESRLDTI 99 RK+ SY +Q + +K+ ++ D+ E R TS+ LI E+R D I Sbjct: 43 RKNMNSY--IQSQTTRKLPLFHADLP-------ITEMHRGTERTSYIPLILNPETRSDVI 93 Query: 100 VYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL 159 R F T+ ARQ ++HR V VN R V+I + GD+I ++ ++ Sbjct: 94 PVRLHFRETLPQARQPISHRRVCVNNRIVSITRLKVSHGDLISFQENDARIRG------- 146 Query: 160 AERDVPEYISVNHDNMVATFVRIP 183 E YI ++ D ++ F+ P Sbjct: 147 EEIRRSFYIEISVDKIIGKFLDHP 170 >gi|227828305|ref|YP_002830085.1| 30S ribosomal protein S4P [Sulfolobus islandicus M.14.25] gi|227831063|ref|YP_002832843.1| 30S ribosomal protein S4P [Sulfolobus islandicus L.S.2.15] gi|229579944|ref|YP_002838343.1| 30S ribosomal protein S4P [Sulfolobus islandicus Y.G.57.14] gi|229581395|ref|YP_002839794.1| 30S ribosomal protein S4P [Sulfolobus islandicus Y.N.15.51] gi|229585535|ref|YP_002844037.1| 30S ribosomal protein S4P [Sulfolobus islandicus M.16.27] gi|238620497|ref|YP_002915323.1| 30S ribosomal protein S4P [Sulfolobus islandicus M.16.4] gi|284998559|ref|YP_003420327.1| ribosomal protein S4 [Sulfolobus islandicus L.D.8.5] gi|259495293|sp|C3N052|RS4_SULIA RecName: Full=30S ribosomal protein S4P gi|259495294|sp|C4KJ91|RS4_SULIK RecName: Full=30S ribosomal protein S4P gi|259495295|sp|C3MJP5|RS4_SULIL RecName: Full=30S ribosomal protein S4P gi|259495296|sp|C3MZ03|RS4_SULIM RecName: Full=30S ribosomal protein S4P gi|259495297|sp|C3NMQ2|RS4_SULIN RecName: Full=30S ribosomal protein S4P gi|259495298|sp|C3N8R6|RS4_SULIY RecName: Full=30S ribosomal protein S4P gi|227457511|gb|ACP36198.1| ribosomal protein S4 [Sulfolobus islandicus L.S.2.15] gi|227460101|gb|ACP38787.1| ribosomal protein S4 [Sulfolobus islandicus M.14.25] gi|228010659|gb|ACP46421.1| ribosomal protein S4 [Sulfolobus islandicus Y.G.57.14] gi|228012111|gb|ACP47872.1| ribosomal protein S4 [Sulfolobus islandicus Y.N.15.51] gi|228020585|gb|ACP55992.1| ribosomal protein S4 [Sulfolobus islandicus M.16.27] gi|238381567|gb|ACR42655.1| ribosomal protein S4 [Sulfolobus islandicus M.16.4] gi|284446455|gb|ADB87957.1| ribosomal protein S4 [Sulfolobus islandicus L.D.8.5] gi|323475375|gb|ADX85981.1| ribosomal protein S4 [Sulfolobus islandicus REY15A] Length = 181 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVY+ T + ARQ + H H+ VNG+ V Y Sbjct: 101 LLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGY 143 >gi|21228258|ref|NP_634180.1| 30S ribosomal protein S4P [Methanosarcina mazei Go1] gi|26399388|sp|Q8PV18|RS4_METMA RecName: Full=30S ribosomal protein S4P gi|20906715|gb|AAM31852.1| SSU ribosomal protein S4P [Methanosarcina mazei Go1] Length = 219 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI-GSYRCKEGDV 140 + LE RL T V R T+ ARQF+ H H+ +NGR I G KE ++ Sbjct: 108 NILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEM 159 >gi|323478100|gb|ADX83338.1| ribosomal protein S4 [Sulfolobus islandicus HVE10/4] Length = 181 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVY+ T + ARQ + H H+ VNG+ V Y Sbjct: 101 LLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGY 143 >gi|268324995|emb|CBH38583.1| 30S ribosomal protein S4P [uncultured archaeon] Length = 166 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 29/50 (58%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 LE RL T VY+ + +I ARQ + H H+ V+GR V I SY +E + Sbjct: 107 DVLERRLQTRVYKKELANSIKHARQLIVHGHIAVDGRRVTIPSYIIREDE 156 >gi|255590109|ref|XP_002535173.1| Mitochondrial ribosomal protein S4, putative [Ricinus communis] gi|223523829|gb|EEF27209.1| Mitochondrial ribosomal protein S4, putative [Ricinus communis] Length = 276 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 81 RGDTSHNLISFL---ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKE 137 RG + I FL E+R D I R F TI ARQ ++HR V VN V+I + Sbjct: 3 RGTERTSYIPFLLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVSITHLKVSH 62 Query: 138 GDVIEVK 144 GD+I K Sbjct: 63 GDIISFK 69 >gi|20089978|ref|NP_616053.1| 30S ribosomal protein S4P [Methanosarcina acetivorans C2A] gi|26399405|sp|Q8TRR1|RS4_METAC RecName: Full=30S ribosomal protein S4P gi|19914941|gb|AAM04533.1| ribosomal protein S4p [Methanosarcina acetivorans C2A] Length = 218 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI-GSYRCKEGDV 140 + LE RL T V R T+ ARQF+ H H+ +NGR I G KE ++ Sbjct: 107 NILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEM 158 >gi|325958563|ref|YP_004290029.1| 30S ribosomal protein S4 [Methanobacterium sp. AL-21] gi|325329995|gb|ADZ09057.1| ribosomal protein S4 [Methanobacterium sp. AL-21] Length = 178 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 L RL+TIVY+ T AR F+ H H+ +NGR +N Y K G+ Sbjct: 101 LRRRLETIVYKRGLSNTAKQARLFIVHGHIAMNGRKINAPGYLVKSGE 148 >gi|171185874|ref|YP_001794793.1| 30S ribosomal protein S4P [Thermoproteus neutrophilus V24Sta] gi|226695089|sp|B1Y9B8|RS4_THENV RecName: Full=30S ribosomal protein S4P gi|170935086|gb|ACB40347.1| ribosomal protein S4 [Thermoproteus neutrophilus V24Sta] Length = 159 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S ++ + LE RL TIVYR +I+ ARQ + H H+ V GR V+ Sbjct: 97 SLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVS 141 >gi|124486066|ref|YP_001030682.1| 30S ribosomal protein S4P [Methanocorpusculum labreanum Z] gi|152112228|sp|A2SSV9|RS4_METLZ RecName: Full=30S ribosomal protein S4P gi|124363607|gb|ABN07415.1| SSU ribosomal protein S4P [Methanocorpusculum labreanum Z] Length = 181 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVYR + ARQ + H H+ +NG+ V++ SY Sbjct: 105 ILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSY 147 >gi|200004057|ref|YP_002221391.1| putative ribosomal protein S4 [Blastocystis sp. NandII] gi|198385479|gb|ACH86072.1| putative ribosomal protein S4 [Blastocystis sp. NandII] Length = 1017 Score = 43.1 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 11/89 (12%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ ++KY ++ +F+ I K N ++F E RLD +Y A FV +I+AA+ Sbjct: 63 KQILRKYLAIYNDNEFKLILKR----------NYLNF-EKRLDFNLYHANFVNSIYAAKF 111 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 F+ V VN + + +Y K+ D++E+ Sbjct: 112 FITKGCVFVNKKKITSFNYILKKNDIVEI 140 >gi|145592094|ref|YP_001154096.1| 30S ribosomal protein S4 [Pyrobaculum arsenaticum DSM 13514] gi|152112250|sp|A4WM27|RS4_PYRAR RecName: Full=30S ribosomal protein S4P gi|145283862|gb|ABP51444.1| SSU ribosomal protein S4P [Pyrobaculum arsenaticum DSM 13514] Length = 159 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S ++ + LE RL TIVYR +I+ ARQ + H H+ + GR V Sbjct: 97 SLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVT 141 >gi|73667629|ref|YP_303644.1| 30S ribosomal protein S4P [Methanosarcina barkeri str. Fusaro] gi|90101692|sp|Q46GC8|RS4_METBF RecName: Full=30S ribosomal protein S4P gi|72394791|gb|AAZ69064.1| SSU ribosomal protein S4P [Methanosarcina barkeri str. Fusaro] Length = 216 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 13/90 (14%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV------ 143 + LE RL T V R T+ ARQF+ H H+ +NGR + + D + + Sbjct: 107 NILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATS 166 Query: 144 -------KQKSKQLASVLEASQLAERDVPE 166 ++ Q+ASVL S R V E Sbjct: 167 PLVSESHPERPVQVASVLADSTTTLRAVAE 196 >gi|224020959|ref|YP_002608192.1| ribosomal protein S4 [Carica papaya] gi|170522371|gb|ACB20481.1| ribosomal protein S4 [Carica papaya] Length = 352 Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLD 97 RK+ SY +Q + +K+ ++GD+ E R TS+ I F E+RLD Sbjct: 50 RKNLNSY--IQSQTTRKLSLFHGDLP-------ITEMHRGTERTSY--IPFPLNPETRLD 98 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQL 150 I R F T+ ARQ ++HR V VN V+I + GD+I ++ ++ Sbjct: 99 VIPVRLHFRETLPQARQPISHRRVCVNNGMVSITRLKLSHGDIISFQENDARI 151 >gi|297527614|ref|YP_003669638.1| ribosomal protein S4 [Staphylothermus hellenicus DSM 12710] gi|297256530|gb|ADI32739.1| ribosomal protein S4 [Staphylothermus hellenicus DSM 12710] Length = 168 Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVY+ TI+ ARQ + H H+ + GR V Y Sbjct: 100 LLERRLQTIVYKKGLARTIYHARQLIVHGHIAIAGRRVTSPGY 142 >gi|290559362|gb|EFD92695.1| ribosomal protein S4 [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 177 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 16/150 (10%) Query: 2 SKRESSKHKIDRRIGENLWGRPK---SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ-- 56 +KR+S K++ +I W +P+ V + YG + K + L+LRA+ Sbjct: 4 AKRQSKKYRSPLKI----WDKPRIERDKVLRKKYGFKNKKELWKVESVLRNLRLRARDLV 59 Query: 57 KMKKY-YGDISEKKFRSIFKEADRSRGDTS------HNLISFLESRLDTIVYRAKFVPTI 109 +K G EK+F + K+ D + N+ + L+ RL T V + +I Sbjct: 60 GLKALNLGQEEEKEFIATLKKRGLVGNDATIDDVLELNIENLLDRRLQTFVLNKEMARSI 119 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 ARQ + HRH+ V+G+ ++ SY K+ + Sbjct: 120 REARQIITHRHITVDGKLIDSPSYMVKKDE 149 >gi|57231035|gb|AAW47278.1| ribosomal protein S4 [Lonicera sp. Bergthorsson 0301] Length = 318 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ E R TS+ I F E+R D I R F Sbjct: 45 IQSQTTRKLPLFHGDLP-------ITEMHRGTERTSY--IPFPLNPETRSDVIPVRLHFR 95 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE 166 TI ARQ ++HR V VN V+I ++ GD+I ++ + + L + R Sbjct: 96 ETIPQARQPISHRRVCVNNGMVSITHFKVSHGDLISFQENDARTPNCL--GEEIRRSF-- 151 Query: 167 YISVNHDNMVATFVRIP 183 YI ++ + ++ F+ P Sbjct: 152 YIEISVEKIIGKFLDHP 168 >gi|269986618|gb|EEZ92900.1| ribosomal protein S4 [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 176 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK--EGDVIEVK 144 NL +F++ RL T V + +I +RQ + HRH+ V+G+ ++ SY K E D I+ Sbjct: 97 NLENFMDRRLQTFVLKKGMARSIRESRQVITHRHIAVDGKIIDSPSYMVKKEEEDKIDFA 156 Query: 145 QKS 147 + S Sbjct: 157 ETS 159 >gi|296109382|ref|YP_003616331.1| ribosomal protein S4 [Methanocaldococcus infernus ME] gi|295434196|gb|ADG13367.1| ribosomal protein S4 [Methanocaldococcus infernus ME] Length = 183 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+V+R T ARQ + H H+ +NGR V + SY Sbjct: 101 DILERRLQTLVFRKGLARTPRQARQLIVHGHIAINGRRVTVPSY 144 >gi|332157866|ref|YP_004423145.1| 30S ribosomal protein S4 [Pyrococcus sp. NA2] gi|331033329|gb|AEC51141.1| 30S ribosomal protein S4 [Pyrococcus sp. NA2] Length = 180 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVYR T+ ARQ + H H+ VNG+ + SY Sbjct: 99 DILERRLQTIVYRKGLARTMRQARQLIVHGHIEVNGQIIRSPSY 142 >gi|110668836|ref|YP_658647.1| 30S ribosomal protein S4P [Haloquadratum walsbyi DSM 16790] gi|121687159|sp|Q18G54|RS4_HALWD RecName: Full=30S ribosomal protein S4P gi|109626583|emb|CAJ53047.1| ribosomal protein S4 [Haloquadratum walsbyi DSM 16790] Length = 175 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 24/43 (55%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 ++ LE RL TIVYR T ARQF+ H H+ VNG V Sbjct: 98 DVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVT 140 >gi|126459584|ref|YP_001055862.1| 30S ribosomal protein S4P [Pyrobaculum calidifontis JCM 11548] gi|152112251|sp|A3MUS9|RS4_PYRCJ RecName: Full=30S ribosomal protein S4P gi|126249305|gb|ABO08396.1| SSU ribosomal protein S4P [Pyrobaculum calidifontis JCM 11548] Length = 159 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S ++ + LE RL T+V+R +I ARQ V H HVLV GR V Sbjct: 97 SLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVT 141 >gi|57231019|gb|AAW47270.1| ribosomal protein S4 [Calycanthus floridus] Length = 319 Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 ++L+ +K+ ++GD+ + RG + I F E+R D I R F Sbjct: 50 IKLQTTRKLPLFHGDLPI---------TEMHRGTERTSYIPFPLNPETRSDVIPVRLHFR 100 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I + GD+I K+ Sbjct: 101 ETIPQARQPISHRRVCVNNGMVSITHLKVSHGDLISFKE 139 >gi|302423224|ref|XP_003009442.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261352588|gb|EEY15016.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 470 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LE RL+ ++RA F + ARQF H V VNG+ + Y GD+ +V Sbjct: 152 LERRLEVAIFRAMFASSTLQARQFCIHGAVRVNGQLMRSPGYLLNPGDMFQV 203 >gi|126465713|ref|YP_001040822.1| 30S ribosomal protein S4P [Staphylothermus marinus F1] gi|152112263|sp|A3DMQ4|RS4_STAMF RecName: Full=30S ribosomal protein S4P gi|126014536|gb|ABN69914.1| SSU ribosomal protein S4P [Staphylothermus marinus F1] Length = 168 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVY+ TI+ ARQ + H H+ + GR + Y Sbjct: 100 LLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGY 142 >gi|200004029|ref|YP_002221364.1| putative ribosomal protein S4 [Blastocystis sp. DMP/02-328] gi|198385453|gb|ACH86047.1| putative ribosomal protein S4 [Blastocystis sp. DMP/02-328] Length = 922 Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 18/111 (16%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISF----LESR 95 R+ + ++ + KQ +KKY + E F++ ++IS +E R Sbjct: 58 RKLNIKRFYYYKFNNKQFLKKYLVNYKEYNFKT--------------HIISLNFKTIERR 103 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 LD +Y+AKFVP++FAA ++ + ++ VN + + ++ + D + + K Sbjct: 104 LDYNLYKAKFVPSLFAAHFYITNGYIFVNQKCIKNCNFILQTNDRVTIHSK 154 >gi|261403747|ref|YP_003247971.1| ribosomal protein S4 [Methanocaldococcus vulcanius M7] gi|261370740|gb|ACX73489.1| ribosomal protein S4 [Methanocaldococcus vulcanius M7] Length = 186 Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 73 IFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 I K D + D S + LE RL T+V+R T ARQ + HRH+ V+GR V Sbjct: 83 ILKIEDPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIIHRHIAVDGRVVTSP 142 Query: 132 SY 133 SY Sbjct: 143 SY 144 >gi|320590340|gb|EFX02783.1| 30S ribosomal subunit [Grosmannia clavigera kw1407] Length = 450 Score = 42.0 bits (97), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 +E RLD V+R+ F + ARQFV H V VNG+ + Y GD+ +V Sbjct: 137 MERRLDIAVFRSLFASSARQARQFVVHGAVRVNGKKMVYPGYLLNPGDLFQV 188 >gi|154151763|ref|YP_001405381.1| 30S ribosomal protein S4P [Candidatus Methanoregula boonei 6A8] gi|171769717|sp|A7IAH7|RS4_METB6 RecName: Full=30S ribosomal protein S4P gi|154000315|gb|ABS56738.1| ribosomal protein S4 [Methanoregula boonei 6A8] Length = 185 Score = 42.0 bits (97), Expect = 0.056, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 25/48 (52%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 LE RL T+VYR + ARQ V H H+ + GR V + Y G+ Sbjct: 106 LERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGE 153 >gi|18313809|ref|NP_560476.1| 30S ribosomal protein S4P [Pyrobaculum aerophilum str. IM2] gi|26399437|sp|Q8ZTV1|RS4_PYRAE RecName: Full=30S ribosomal protein S4P gi|18161370|gb|AAL64658.1| ribosomal protein S4 [Pyrobaculum aerophilum str. IM2] Length = 159 Score = 42.0 bits (97), Expect = 0.056, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S ++ + LE RL TIVYR +I ARQ + H HV V GR V Sbjct: 97 SLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVT 141 >gi|218884676|ref|YP_002429058.1| 30S ribosomal protein S4P [Desulfurococcus kamchatkensis 1221n] gi|218766292|gb|ACL11691.1| 30S ribosomal protein S4P [Desulfurococcus kamchatkensis 1221n] Length = 147 Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 28/57 (49%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + KE R + + LE RL TIVY+ T+ ARQ + H H+ + GR V Sbjct: 58 GLLKEGARLDDVLNLKIEDLLERRLQTIVYKKGLAKTLHEARQLIVHGHIAIGGRRV 114 >gi|288560163|ref|YP_003423649.1| ribosomal protein S4P Rps4p [Methanobrevibacter ruminantium M1] gi|288542873|gb|ADC46757.1| ribosomal protein S4P Rps4p [Methanobrevibacter ruminantium M1] Length = 178 Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 L RL TIV++ T AR FV H H+ +NG+ +N SY K G+ Sbjct: 100 ILRRRLQTIVFQKGLARTAKEARMFVVHGHIALNGKKINSPSYVVKRGE 148 >gi|299739156|ref|XP_001835093.2| nam9 protein [Coprinopsis cinerea okayama7#130] gi|298403647|gb|EAU86735.2| nam9 protein [Coprinopsis cinerea okayama7#130] Length = 390 Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 11/91 (12%) Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQ+ K + +I EK + + +E R+D ++R F +++ A Sbjct: 105 RRKQREKSFDEEIEEKGMAPV-----------GSLMFQEVERRIDVFLFRCCFAHSVYEA 153 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 R+ V H VL+NGR + R GD++ V Sbjct: 154 RRMVIHGDVLLNGRKHTNANTRLAPGDMVTV 184 >gi|289580105|ref|YP_003478571.1| ribosomal protein S4 [Natrialba magadii ATCC 43099] gi|289529658|gb|ADD04009.1| ribosomal protein S4 [Natrialba magadii ATCC 43099] Length = 173 Score = 41.6 bits (96), Expect = 0.074, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 8/95 (8%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 I EAD S + LE RL T+ YR T ARQF+ H HV+V + + Sbjct: 82 GILDEADELGDILSLEVEDVLERRLQTVAYRKGLANTPQQARQFIIHGHVVVGDQRHRVP 141 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE 166 SY V++V ++ L + E S LA+ PE Sbjct: 142 SY------VVDVDEED--LVAFDETSPLADDLHPE 168 >gi|321248591|ref|XP_003191176.1| nam9 protein, mitochondrial precursor [Cryptococcus gattii WM276] gi|317457643|gb|ADV19389.1| nam9 protein, mitochondrial precursor, putative [Cryptococcus gattii WM276] Length = 317 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 R L + +E RLD +++R+ F ++ AR++V HV +NG+ + + GDV Sbjct: 129 RAPVGTMLFADVERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVIRNPNIMLNPGDV 188 Query: 141 IEVKQKSKQL--ASVLEASQLAERDV 164 V + A ++ Q AE DV Sbjct: 189 FTVNPSQIVMLQAPKSKSQQSAEGDV 214 >gi|149239088|ref|XP_001525420.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146450913|gb|EDK45169.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 460 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 16/106 (15%) Query: 54 AKQKMKKYYGD-ISEKKFRSI--------FKEADRS-RGD----TSHNLISF--LESRLD 97 AK + + Y+G+ + EK+F+ + + + D S +G+ T L ++ LE RL+ Sbjct: 48 AKSETRAYHGEHLKEKRFKKVLFDPELKTYSQLDASLKGEAVAPTPITLQTYAALEKRLE 107 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 V+R+ F ++ ARQF+ V VNG + S+ K GDV V Sbjct: 108 FAVFRSMFASSVRQARQFILGGFVKVNGVKIRHPSFPLKSGDVFSV 153 >gi|148643486|ref|YP_001273999.1| 30S ribosomal protein S4P [Methanobrevibacter smithii ATCC 35061] gi|222445015|ref|ZP_03607530.1| hypothetical protein METSMIALI_00631 [Methanobrevibacter smithii DSM 2375] gi|261350415|ref|ZP_05975832.1| ribosomal protein S4 [Methanobrevibacter smithii DSM 2374] gi|172048097|sp|A5UN53|RS4_METS3 RecName: Full=30S ribosomal protein S4P gi|148552503|gb|ABQ87631.1| ribosomal protein S4p [Methanobrevibacter smithii ATCC 35061] gi|222434580|gb|EEE41745.1| hypothetical protein METSMIALI_00631 [Methanobrevibacter smithii DSM 2375] gi|288861198|gb|EFC93496.1| ribosomal protein S4 [Methanobrevibacter smithii DSM 2374] Length = 178 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L RL TIVY+ T AR FV H H+ +NG+ +N SY +G E+ Sbjct: 99 DILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEI 152 >gi|289191582|ref|YP_003457523.1| ribosomal protein S4 [Methanocaldococcus sp. FS406-22] gi|288938032|gb|ADC68787.1| ribosomal protein S4 [Methanocaldococcus sp. FS406-22] Length = 186 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+V+R T ARQ + H H+ VNGR V SY Sbjct: 101 DILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSY 144 >gi|88604134|ref|YP_504312.1| 30S ribosomal protein S4P [Methanospirillum hungatei JF-1] gi|121721493|sp|Q2FT97|RS4_METHJ RecName: Full=30S ribosomal protein S4P gi|88189596|gb|ABD42593.1| SSU ribosomal protein S4P [Methanospirillum hungatei JF-1] Length = 181 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 24/42 (57%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L+ RL T VYR F + ARQF+ H H+ + GR V I Y Sbjct: 106 LDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGY 147 >gi|57231029|gb|AAW47275.1| ribosomal protein S4 [Piper betle] Length = 326 Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 21/146 (14%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLD 97 RK+ SY Q +K+ +YGD+ E R TS+ I F E+R D Sbjct: 39 RKNLNSYIKSQ--TTRKLPLFYGDLP-------ITEMHRGTERTSY--IPFPLNPETRSD 87 Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS 157 I R F T+ ARQ ++HR V VN V+I + GD+I ++ + Sbjct: 88 VIPVRLHFRETLPQARQPISHRRVCVNNGMVSITHLKVSHGDLISFQENEARTGG----- 142 Query: 158 QLAERDVPEYISVNHDNMVATFVRIP 183 E YI ++ +N++ F+ P Sbjct: 143 --EEIRRSFYIDISIENIIGKFLDHP 166 >gi|15668362|ref|NP_247158.1| 30S ribosomal protein S4P [Methanocaldococcus jannaschii DSM 2661] gi|1710769|sp|P54020|RS4_METJA RecName: Full=30S ribosomal protein S4P gi|1498964|gb|AAB98170.1| SSU ribosomal protein S4P (rpsD) [Methanocaldococcus jannaschii DSM 2661] Length = 187 Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+V+R T ARQ + H H+ VNGR V SY Sbjct: 101 DILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSY 144 >gi|224116676|ref|XP_002317362.1| predicted protein [Populus trichocarpa] gi|118482733|gb|ABK93285.1| unknown [Populus trichocarpa] gi|222860427|gb|EEE97974.1| predicted protein [Populus trichocarpa] Length = 197 Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 SFLE RL T+V++A +I AR + RH+ V ++VNI S+ + Sbjct: 105 SFLERRLQTLVFKAGMAKSIHHARVLIKQRHIRVGRQAVNIPSFMVR 151 >gi|315229893|ref|YP_004070329.1| 30S ribosomal protein S9e (S4p) [Thermococcus barophilus MP] gi|315182921|gb|ADT83106.1| SSU ribosomal protein S9e (S4p) [Thermococcus barophilus MP] Length = 181 Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 S + LE RL T+VY+ TI ARQ + H H+ VNG+ + SY Sbjct: 94 SLTIEDILERRLQTLVYKKGLARTIKQARQLIVHGHIEVNGQIIRSPSY 142 >gi|14591410|ref|NP_143490.1| 30S ribosomal protein S4 [Pyrococcus horikoshii OT3] gi|6647790|sp|O59306|RS4_PYRHO RecName: Full=30S ribosomal protein S4P gi|3258069|dbj|BAA30752.1| 180aa long hypothetical 30S ribosomal protein S4 [Pyrococcus horikoshii OT3] Length = 180 Score = 41.2 bits (95), Expect = 0.097, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVY+ T+ ARQ + H H+ VNG+ + SY Sbjct: 99 DILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSY 142 >gi|222480229|ref|YP_002566466.1| ribosomal protein S4 [Halorubrum lacusprofundi ATCC 49239] gi|222453131|gb|ACM57396.1| ribosomal protein S4 [Halorubrum lacusprofundi ATCC 49239] Length = 175 Score = 41.2 bits (95), Expect = 0.098, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 25/45 (55%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 S ++ LE RL T+ YR F + ARQF+ H H+ V+G V Sbjct: 96 SLDVTDLLERRLQTVAYRQGFASSTQQARQFIVHGHITVDGARVT 140 >gi|256810445|ref|YP_003127814.1| ribosomal protein S4 [Methanocaldococcus fervens AG86] gi|256793645|gb|ACV24314.1| ribosomal protein S4 [Methanocaldococcus fervens AG86] Length = 184 Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+V+R T ARQ + H H+ VNGR V SY Sbjct: 101 DILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSY 144 >gi|14520744|ref|NP_126219.1| 30S ribosomal protein S4P [Pyrococcus abyssi GE5] gi|18978021|ref|NP_579378.1| 30S ribosomal protein S4 [Pyrococcus furiosus DSM 3638] gi|48429105|sp|P61992|RS4_PYRAB RecName: Full=30S ribosomal protein S4P gi|48429106|sp|P61993|RS4_PYRFU RecName: Full=30S ribosomal protein S4P gi|5457960|emb|CAB49450.1| rps4P SSU ribosomal protein S4P [Pyrococcus abyssi GE5] gi|18893804|gb|AAL81773.1| SSU ribosomal protein S4P [Pyrococcus furiosus DSM 3638] Length = 180 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 85 SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC--KEGDVI 141 S + LE RL TIVY+ T+ ARQ + H H+ VNG+ + SY +E D I Sbjct: 94 SLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTI 152 >gi|302674230|ref|XP_003026800.1| hypothetical protein SCHCODRAFT_258801 [Schizophyllum commune H4-8] gi|300100484|gb|EFI91897.1| hypothetical protein SCHCODRAFT_258801 [Schizophyllum commune H4-8] Length = 335 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 + + +E R+D +++R+ P+++ AR+ V H V +NG+ + R GD++ V Sbjct: 127 MFADVERRIDVLIFRSCLAPSVYEARRLVVHGKVKLNGKQHQNANTRLAPGDMVTV 182 >gi|164657864|ref|XP_001730058.1| hypothetical protein MGL_3044 [Malassezia globosa CBS 7966] gi|159103952|gb|EDP42844.1| hypothetical protein MGL_3044 [Malassezia globosa CBS 7966] Length = 431 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 27/130 (20%) Query: 42 KSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIF----------------------KEAD 78 K+ + + + R+K+ ++ Y+GD I E++F+ F E+D Sbjct: 43 KTSMTMYQQRWRSKRMLRGYHGDWIPERRFKRWFLPTSLPSYAPSFLSTVKPLSDADESD 102 Query: 79 RSRGDTSHNLISF----LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 + + + S +E R+DT V+R F +++ AR V H V +NG Y Sbjct: 103 HALDSPTPPVKSLFMRDVERRIDTAVFRCCFAHSVYYARSLVLHGKVSLNGNVHRDPGYL 162 Query: 135 CKEGDVIEVK 144 + GD++ V+ Sbjct: 163 LQPGDLLSVE 172 >gi|57641440|ref|YP_183918.1| 30S ribosomal protein S4 [Thermococcus kodakarensis KOD1] gi|73919022|sp|Q5JJF2|RS4_PYRKO RecName: Full=30S ribosomal protein S4P gi|57159764|dbj|BAD85694.1| SSU ribosomal protein S4P [Thermococcus kodakarensis KOD1] Length = 180 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIVYR T+ ARQ + H H+ VNG+ + Y Sbjct: 99 DVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGY 142 >gi|166895637|ref|YP_001661430.1| ribosomal protein S4 [Cycas taitungensis] gi|166706969|dbj|BAF98433.1| ribosomal protein S4 [Cycas taitungensis] Length = 348 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Query: 82 GDTSHNLISFL---ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG 138 G + I FL E+R D I R F TI ARQ ++HR + N VNI + G Sbjct: 76 GTERTSYIPFLFNPETRSDVIPVRPHFRETIPQARQPISHRKIRANNEMVNITRSKVSHG 135 Query: 139 DVIEVK 144 D I +K Sbjct: 136 DPIPIK 141 >gi|233162|gb|AAB19387.1| ribosomal protein S4 [Bacillus subtilis] Length = 57 Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK+ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKL 57 >gi|304314285|ref|YP_003849432.1| 30S ribosomal protein S4p [Methanothermobacter marburgensis str. Marburg] gi|302587744|gb|ADL58119.1| 30S ribosomal protein S4p [Methanothermobacter marburgensis str. Marburg] Length = 171 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSK 148 L RL T+V++ T+ ARQ V H H+ ++GR ++ Y K G+ ++ S Sbjct: 99 DVLRRRLQTLVHKRGLARTVNEARQMVVHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSS 158 Query: 149 QLASVLEASQLAE 161 + +EA+Q AE Sbjct: 159 PMKKQIEAAQDAE 171 >gi|58263106|ref|XP_568963.1| nam9 protein, mitochondrial precursor [Cryptococcus neoformans var. neoformans JEC21] gi|57223613|gb|AAW41656.1| nam9 protein, mitochondrial precursor, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 317 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 R L + +E RLD +++R+ F ++ AR++V HV +NG+ + + GDV Sbjct: 129 RAPVGTMLFADIERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIMLNPGDV 188 Query: 141 IEV 143 V Sbjct: 189 FTV 191 >gi|15678065|ref|NP_275179.1| 30S ribosomal protein S4P [Methanothermobacter thermautotrophicus str. Delta H] gi|6647786|sp|O26142|RS4_METTH RecName: Full=30S ribosomal protein S4P gi|2621071|gb|AAB84543.1| ribosomal protein S9 (E.coli ) [Methanothermobacter thermautotrophicus str. Delta H] Length = 171 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK-QKSK 148 L RL T+V++ T+ ARQ V H H+ ++GR ++ Y K G+ ++ S Sbjct: 99 DVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSS 158 Query: 149 QLASVLEASQLAE 161 + +EA+Q AE Sbjct: 159 PMKKQIEAAQDAE 171 >gi|301353221|ref|YP_003795218.1| ribosomal protein S4 [Proteromonas lacertae] gi|290573169|gb|ADD46356.1| ribosomal protein S4 [Proteromonas lacertae] Length = 490 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 13/104 (12%) Query: 44 KPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYR 102 K ++ L+ +KQ +KK G +E+ FR RS +T++ + +R D ++YR Sbjct: 77 KRQFYSLKFISKQFLKKNSGAYFTERLFR-------RSLYNTNY-----IYNRFDLVLYR 124 Query: 103 AKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 F ++ +ARQ + H +N S+ ++ GD+IE+ K Sbjct: 125 TGFASSLKSARQLILHGFFFINHISIRNPNFLLSCGDLIEINLK 168 >gi|134107834|ref|XP_777299.1| hypothetical protein CNBB1020 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259989|gb|EAL22652.1| hypothetical protein CNBB1020 [Cryptococcus neoformans var. neoformans B-3501A] Length = 317 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 81 RGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDV 140 R L + +E RLD +++R+ F ++ AR++V HV +NG+ + + GDV Sbjct: 129 RAPVGTMLFADIERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIMLNPGDV 188 Query: 141 IEV 143 V Sbjct: 189 FTV 191 >gi|254167741|ref|ZP_04874591.1| ribosomal protein S4 [Aciduliprofundum boonei T469] gi|289597070|ref|YP_003483766.1| ribosomal protein S4 [Aciduliprofundum boonei T469] gi|197623269|gb|EDY35834.1| ribosomal protein S4 [Aciduliprofundum boonei T469] gi|289534857|gb|ADD09204.1| ribosomal protein S4 [Aciduliprofundum boonei T469] Length = 187 Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIE 142 L RL TIVY T ARQF+ H H+ + R V I SY R +E D+++ Sbjct: 103 DILRRRLQTIVYLKGLARTPKQARQFIVHGHIAIGDRKVTIPSYLVRKEEEDLVD 157 >gi|284165824|ref|YP_003404103.1| ribosomal protein S4 [Haloterrigena turkmenica DSM 5511] gi|284015479|gb|ADB61430.1| ribosomal protein S4 [Haloterrigena turkmenica DSM 5511] Length = 173 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 8/95 (8%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 I E D S + LE RL T+VYR T ARQ++ H H+++ + + Sbjct: 82 GILDETDELGDILSLEIEDILERRLQTVVYRNGLANTTQQARQYIIHGHIVIGDQRHRVP 141 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE 166 SY V++V ++ L E S LA+ PE Sbjct: 142 SY------VVDVDEED--LVDFDENSPLADELHPE 168 >gi|1749714|dbj|BAA13914.1| unnamed protein product [Schizosaccharomyces pombe] Length = 327 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 +FLESRLD ++RA F AR V H V V+G+ GD++ V QKS Sbjct: 92 AFLESRLDMSIHRAFFASYALQARLLVLHGKVHVDGKPERRAYRPLLPGDLVTVDQKS 149 >gi|112799402|gb|ABI23026.1| ribosomal protein small subunit S9 [Candidatus Micrarchaeum acidiphilum ARMAN-2] gi|255513948|gb|EET90213.1| ribosomal protein S4 [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 187 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++ TI ARQ + H + VN + V+I Y Sbjct: 97 AFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGY 140 >gi|257388630|ref|YP_003178403.1| 30S ribosomal protein S4P [Halomicrobium mukohataei DSM 12286] gi|257170937|gb|ACV48696.1| ribosomal protein S4 [Halomicrobium mukohataei DSM 12286] Length = 173 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 16/110 (14%) Query: 17 ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD--ISEKKFRSIF 74 E LW R +S + RSY RR+++ L RA+ + ++ D ++ K + Sbjct: 38 EELW-RAQSEL--RSY-------RREARK----LLGRAEGEGSRFEADEFLTRLKRLGVL 83 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 E D S ++ LE RL T+VYR + T ARQF++H H+++ Sbjct: 84 NETDALDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFISHGHIVLG 133 >gi|292656900|ref|YP_003536797.1| 30S ribosomal protein S4 [Haloferax volcanii DS2] gi|291372709|gb|ADE04936.1| ribosomal protein S4 [Haloferax volcanii DS2] Length = 175 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK--EGDVIEVK 144 ++ LE R T+ YR T ARQF+ H HV V+G + S + + E D + Sbjct: 98 DVTDILERRFQTVAYRKGLAQTPQQARQFIVHGHVTVDGARTTVPSRKVEVDEEDTVAFD 157 Query: 145 QKSK 148 + SK Sbjct: 158 ETSK 161 >gi|57231031|gb|AAW47276.1| ribosomal protein S4 [Platanus occidentalis] Length = 320 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ E R TS+ I F E+R D I R F Sbjct: 50 IQSQTTRKLPLFHGDLP-------ITEMHRGTERTSY--IPFPLNPETRSDVIPVRLHFR 100 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I + GD+I ++ Sbjct: 101 ETIPQARQPISHRRVCVNNGMVSITHLKVSHGDLISFQE 139 >gi|16082066|ref|NP_394492.1| 30S ribosomal protein S4P [Thermoplasma acidophilum DSM 1728] gi|26399492|sp|Q9HJD7|RS4_THEAC RecName: Full=30S ribosomal protein S4P gi|10640347|emb|CAC12161.1| probable 30S ribosomal protein S4 [Thermoplasma acidophilum] Length = 199 Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 + L+ RL TIV+R ++ ARQ + H H+ V GR V + K+ D I ++ S Sbjct: 102 NILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENS 161 >gi|406283|emb|CAA81389.1| ribosomal protein RpsD [Bordetella pertussis Tohama I] Length = 72 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPV 193 K GDVI +++K+K+ + E+ LA +P+++ V+ M TF P DV V Sbjct: 3 VKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDASKMTGTFKSAPDR-ADVARDV 61 Query: 194 IMQPNLVVEFYSR 206 ++VVE YSR Sbjct: 62 --NESMVVELYSR 72 >gi|213402771|ref|XP_002172158.1| 37S ribosomal protein NAM9 [Schizosaccharomyces japonicus yFS275] gi|212000205|gb|EEB05865.1| 37S ribosomal protein NAM9 [Schizosaccharomyces japonicus yFS275] Length = 307 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 29/151 (19%) Query: 34 PGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD-ISEKKFRSIFKE-----------ADRSR 81 P L+G+ + F + AK++ + ++G + E +F++ F+ A+ S+ Sbjct: 32 PNLNGK------TLFQKKWIAKRETRSFHGPHLREYQFKNYFESKLLGMTSVNSPAENSK 85 Query: 82 GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 L + LESRLD ++RA F ++ A + + V VNG R + GDV+ Sbjct: 86 IPFMSQLYAPLESRLDIALHRAMFASSVEQAHKIIVSNKVSVNGIREKRAHLRLEPGDVV 145 Query: 142 EVK-----------QKSKQLASVLEASQLAE 161 V + +K AS EA+Q A+ Sbjct: 146 TVDPATVMRSVSSFKPTKSSASSAEATQDAQ 176 >gi|57231033|gb|AAW47277.1| ribosomal protein S4 [Eschscholzia californica] Length = 319 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFL---ESRLDTIVYRAKFV 106 +Q + +K+ ++GD+ E R TS+ I F E+R D I R F Sbjct: 50 IQSQTTRKLPLFHGDLP-------ITEMHRRTERTSY--IPFPLNPETRSDVIPVRLHFR 100 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 TI ARQ ++HR V VN V+I ++ GD+I ++ Sbjct: 101 ETIPQARQPISHRRVCVNNGMVSITHWKVCYGDLISFQE 139 >gi|240104025|ref|YP_002960334.1| 30S ribosomal protein S4P [Thermococcus gammatolerans EJ3] gi|259495300|sp|C5A251|RS4_THEGJ RecName: Full=30S ribosomal protein S4P gi|239911579|gb|ACS34470.1| SSU ribosomal protein S4P (rps4P) [Thermococcus gammatolerans EJ3] Length = 180 Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 77 ADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 AD + D S + LE RL T+VY+ TI ARQ + H H+ VNG+ + Y Sbjct: 85 ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGY 142 >gi|242398331|ref|YP_002993755.1| 30S ribosomal protein S4P [Thermococcus sibiricus MM 739] gi|259495301|sp|C6A1B1|RS4_THESM RecName: Full=30S ribosomal protein S4P gi|242264724|gb|ACS89406.1| 30S ribosomal protein S4P [Thermococcus sibiricus MM 739] Length = 180 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+V++ TI ARQ + H H+ VNG+ + SY Sbjct: 99 DILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSY 142 >gi|257076681|ref|ZP_05571042.1| 30S ribosomal protein S4 [Ferroplasma acidarmanus fer1] Length = 195 Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 11/113 (9%) Query: 46 SYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRS----RGDTSHNLISF-----LESRL 96 S + Q R Q +Y I+EK+F+ + K+ D+ G T ++++ L+ RL Sbjct: 49 SSYRAQARTLQAKVRYNDPIAEKQFQLLLKKLDKLSLLSEGATLDDILALNIENILDRRL 108 Query: 97 DTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKS 147 T+VY+ T+ ARQ + H H+ V V I S +G D I +KS Sbjct: 109 QTLVYQLNMATTMKQARQLITHGHIKVGDHIVTIPSIAVLKGQEDSITYSEKS 161 >gi|254172951|ref|ZP_04879625.1| ribosomal protein S4 [Thermococcus sp. AM4] gi|214033107|gb|EEB73935.1| ribosomal protein S4 [Thermococcus sp. AM4] Length = 180 Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T+VY+ TI ARQ + H H+ VNG+ + Y Sbjct: 99 DVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGY 142 >gi|300521574|gb|ADK25998.1| r-protein S4p [Candidatus Nitrososphaera gargensis] Length = 170 Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL TIV + + + ARQ V+H HV + R VNI Y Sbjct: 100 LLERRLQTIVMKKSGTKSPYQARQMVSHGHVSIGSRKVNIPGY 142 >gi|320101540|ref|YP_004177132.1| 30S ribosomal protein S4P [Desulfurococcus mucosus DSM 2162] gi|319753892|gb|ADV65650.1| SSU ribosomal protein S4P [Desulfurococcus mucosus DSM 2162] Length = 170 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 LE RL T+VY+ T+ ARQ + H H+ + GR + Sbjct: 99 DLLERRLQTLVYKKGLAKTLHEARQLIVHGHIAIGGRRI 137 >gi|312863507|ref|ZP_07723745.1| 30S ribosomal protein S4 domain protein [Streptococcus vestibularis F0396] gi|311101043|gb|EFQ59248.1| 30S ribosomal protein S4 domain protein [Streptococcus vestibularis F0396] Length = 64 Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G+ + N Y PG G +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGKELARCN---YVPGQQGPNNRSKLSEYGLQLAEKQKLRF 57 Query: 61 YYG 63 YG Sbjct: 58 SYG 60 >gi|49147180|ref|YP_025773.1| ribosomal protein S4 [Pseudendoclonium akinetum] gi|33439195|gb|AAQ18732.1| ribosomal protein S4 [Pseudendoclonium akinetum] Length = 420 Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 +++ LESRLD I+++ +F +I +ARQ + + VLVNG S++ GDV Sbjct: 364 IVNLLESRLDVILWKNQFAGSIKSARQNL-RQGVLVNGGLQKKTSFQALPGDVF 416 >gi|302754856|ref|XP_002960852.1| hypothetical protein SELMODRAFT_74302 [Selaginella moellendorffii] gi|302767484|ref|XP_002967162.1| hypothetical protein SELMODRAFT_144850 [Selaginella moellendorffii] gi|300165153|gb|EFJ31761.1| hypothetical protein SELMODRAFT_144850 [Selaginella moellendorffii] gi|300171791|gb|EFJ38391.1| hypothetical protein SELMODRAFT_74302 [Selaginella moellendorffii] Length = 198 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++A +I AR V RH+ V + VN+ S+ Sbjct: 105 NFLERRLQTLVFKAGMAKSIHHARVLVRQRHIRVGKQMVNVPSF 148 >gi|20271156|gb|AAM18533.1|AF375592_1 ribosomal protein S4 [Magnolia x soulangeana] Length = 352 Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 E+R D I R F TI ARQ ++HR V VN V+I + GD+I ++ Sbjct: 90 ETRSDVIPVRLHFRETIPQARQPISHRRVCVNNGMVSITHLKVSHGDLISFQE 142 >gi|224142783|ref|XP_002324730.1| predicted protein [Populus trichocarpa] gi|118483013|gb|ABK93418.1| unknown [Populus trichocarpa] gi|118487957|gb|ABK95800.1| unknown [Populus trichocarpa] gi|118489692|gb|ABK96647.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866164|gb|EEF03295.1| predicted protein [Populus trichocarpa] Length = 197 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V++A +I AR + RH+ V + VNI S+ + Sbjct: 105 NFLERRLQTLVFKAGMAKSIHHARVLIKQRHIRVGRQVVNIPSFMVR 151 >gi|302807245|ref|XP_002985335.1| hypothetical protein SELMODRAFT_157263 [Selaginella moellendorffii] gi|302810984|ref|XP_002987182.1| hypothetical protein SELMODRAFT_235178 [Selaginella moellendorffii] gi|300145079|gb|EFJ11758.1| hypothetical protein SELMODRAFT_235178 [Selaginella moellendorffii] gi|300146798|gb|EFJ13465.1| hypothetical protein SELMODRAFT_157263 [Selaginella moellendorffii] Length = 198 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++A +I AR V RH+ V + VN+ S+ Sbjct: 105 NFLERRLQTLVFKAGMAKSIHHARVLVRQRHIRVGKQMVNVPSF 148 >gi|159041669|ref|YP_001540921.1| 30S ribosomal protein S4P [Caldivirga maquilingensis IC-167] gi|189045367|sp|A8MDS5|RS4_CALMQ RecName: Full=30S ribosomal protein S4P gi|157920504|gb|ABW01931.1| ribosomal protein S4 [Caldivirga maquilingensis IC-167] Length = 181 Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 ++ + LE RL T+VYR +I ARQ + H H+ +NG V Y Sbjct: 99 DVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGY 145 >gi|167044120|gb|ABZ08803.1| putative S4 domain protein [uncultured marine crenarchaeote HF4000_APKG5C13] Length = 204 Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 18/143 (12%) Query: 12 DRRIGENLWGRPKSPVN-------TRSYGP-GLHGQRR----KSKPSYFGLQLRA----K 55 D + +W +PK P+N ++ G GL +R ++K S LQ R+ + Sbjct: 3 DPKTPRRVWKKPKRPLNYDLLMDELKTLGAFGLKTKRELWKTQTKLSRVRLQARSLLALR 62 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL--ISFLESRLDTIVYRAKFVPTIFAAR 113 Q++++ I + I S D NL L RL TI + + T + AR Sbjct: 63 QEIRERKEPILIQSLSKIGLVDQNSTLDDVLNLQVTDLLSRRLQTIAQKKLYFKTPYQAR 122 Query: 114 QFVNHRHVLVNGRSVNIGSYRCK 136 Q + H HV++ V I SY K Sbjct: 123 QAIVHGHVMIEDSVVTIPSYIVK 145 >gi|57231023|gb|AAW47272.1| ribosomal protein S4 [Laurus nobilis] Length = 311 Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 E+R D I R F TI ARQ ++HR V VN V+I + GD+I ++ Sbjct: 83 ETRSDVIPVRLHFRETIPQARQPISHRRVCVNNGMVSITHLKVSHGDLISFQE 135 >gi|57231025|gb|AAW47273.1| ribosomal protein S4 [Liriodendron tulipifera] Length = 320 Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 E+R D I R F TI ARQ ++HR V VN V+I + GD+I ++ Sbjct: 83 ETRSDVIPVRLHFRETIPQARQPISHRRVCVNNGMVSITHLKVSHGDLISFQE 135 >gi|55376997|ref|YP_134847.1| 30S ribosomal protein S4P [Haloarcula marismortui ATCC 43049] gi|266976|sp|Q00862|RS4_HALMA RecName: Full=30S ribosomal protein S4P; AltName: Full=HmaS4 gi|148771|gb|AAA73210.1| ribosomal protein HmaS4 [Haloarcula marismortui] gi|55229722|gb|AAV45141.1| 30S ribosomal protein S4P [Haloarcula marismortui ATCC 43049] Length = 171 Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I E D+ S ++ LE RL T+VYR + T ARQF+ H H++++ Sbjct: 79 GILNEQDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLD 131 >gi|91772119|ref|YP_564811.1| 30S ribosomal protein S4 [Methanococcoides burtonii DSM 6242] gi|121689437|sp|Q12ZR5|RS4_METBU RecName: Full=30S ribosomal protein S4P gi|91711134|gb|ABE51061.1| SSU ribosomal protein S4P [Methanococcoides burtonii DSM 6242] Length = 184 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + LE RL T V+R T ARQF+ H H+ ++G+ V + Sbjct: 104 AILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTV 144 >gi|305662632|ref|YP_003858920.1| SSU ribosomal protein S4P [Ignisphaera aggregans DSM 17230] gi|304377201|gb|ADM27040.1| SSU ribosomal protein S4P [Ignisphaera aggregans DSM 17230] Length = 168 Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + L+ RL T+V++ TI ARQ + H H+ + GR V Y Sbjct: 100 AILDRRLQTLVWKKGLAKTIHQARQLIVHGHIAIKGRRVTSPGY 143 >gi|71000429|ref|XP_754909.1| 40S ribosomal protein S9 [Aspergillus fumigatus Af293] gi|66852546|gb|EAL92871.1| 40S ribosomal protein S9 [Aspergillus fumigatus Af293] gi|159127923|gb|EDP53038.1| 40S ribosomal protein S9 [Aspergillus fumigatus A1163] Length = 237 Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 148 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSY 190 >gi|294495900|ref|YP_003542393.1| 30S ribosomal protein S4P [Methanohalophilus mahii DSM 5219] gi|292666899|gb|ADE36748.1| SSU ribosomal protein S4P [Methanohalophilus mahii DSM 5219] Length = 184 Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 LE RL T+V+R T ARQF+ H H+ ++G+ + + Sbjct: 105 ILERRLQTLVHRLGLARTPKQARQFITHGHIAIDGKKLTV 144 >gi|242812657|ref|XP_002486003.1| 40S ribosomal protein S9 [Talaromyces stipitatus ATCC 10500] gi|218714342|gb|EED13765.1| 40S ribosomal protein S9 [Talaromyces stipitatus ATCC 10500] Length = 192 Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSY 146 >gi|309798829|ref|ZP_07693092.1| ribosomal protein S4 [Streptococcus infantis SK1302] gi|308117555|gb|EFO54968.1| ribosomal protein S4 [Streptococcus infantis SK1302] Length = 64 Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQK 56 >gi|315047058|ref|XP_003172904.1| 40S ribosomal protein S9 [Arthroderma gypseum CBS 118893] gi|311343290|gb|EFR02493.1| 40S ribosomal protein S9 [Arthroderma gypseum CBS 118893] Length = 191 Score = 38.5 bits (88), Expect = 0.61, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYRLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 144 >gi|13541394|ref|NP_111082.1| 30S ribosomal protein S4P [Thermoplasma volcanium GSS1] gi|26399451|sp|Q97B95|RS4_THEVO RecName: Full=30S ribosomal protein S4P gi|14324777|dbj|BAB59704.1| ribosomal protein small subunit S9 [Thermoplasma volcanium GSS1] Length = 200 Score = 38.5 bits (88), Expect = 0.64, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + L+ RL TIV++ + ARQ + H H+ VNGR V + Sbjct: 102 NILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTV 142 >gi|296804202|ref|XP_002842953.1| 40S ribosomal protein S9 [Arthroderma otae CBS 113480] gi|238845555|gb|EEQ35217.1| 40S ribosomal protein S9 [Arthroderma otae CBS 113480] Length = 191 Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYRLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 144 >gi|145234288|ref|XP_001400515.1| 40S ribosomal protein S9 [Aspergillus niger CBS 513.88] gi|134057460|emb|CAK37968.1| unnamed protein product [Aspergillus niger] Length = 193 Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSY 146 >gi|119492999|ref|XP_001263755.1| 40S ribosomal protein S9 [Neosartorya fischeri NRRL 181] gi|119411915|gb|EAW21858.1| 40S ribosomal protein S9 [Neosartorya fischeri NRRL 181] Length = 193 Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSY 146 >gi|115402469|ref|XP_001217311.1| 40S ribosomal protein S9 [Aspergillus terreus NIH2624] gi|114189157|gb|EAU30857.1| 40S ribosomal protein S9 [Aspergillus terreus NIH2624] Length = 193 Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSY 146 >gi|170756305|ref|YP_001780828.1| tyrosyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] gi|169121517|gb|ACA45353.1| tyrosyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] Length = 400 Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 6/97 (6%) Query: 54 AKQKMKKYYGD----ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 AK+ ++ Y+G+ +E+ F++IF++ + D ++ E+ + ++ +AKF P+ Sbjct: 297 AKEIVRLYHGEEASIKAEENFKNIFQQGNIPE-DIDTIKVNLTETNIVDLIVKAKFAPSK 355 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 AR+ V V +NG V+ + K D+++V +K Sbjct: 356 NEARRLVKQGAVKINGEKVD-EECKVKNEDILQVGKK 391 >gi|326471518|gb|EGD95527.1| ribosomal protein S9 [Trichophyton tonsurans CBS 112818] gi|326481818|gb|EGE05828.1| ribosomal protein S9 [Trichophyton equinum CBS 127.97] Length = 191 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|327305937|ref|XP_003237660.1| ribosomal protein S4 [Trichophyton rubrum CBS 118892] gi|326460658|gb|EGD86111.1| ribosomal protein S4 [Trichophyton rubrum CBS 118892] Length = 191 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|212544526|ref|XP_002152417.1| 40S ribosomal protein S9 [Penicillium marneffei ATCC 18224] gi|210065386|gb|EEA19480.1| 40S ribosomal protein S9 [Penicillium marneffei ATCC 18224] Length = 191 Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSY 146 >gi|162605936|ref|XP_001713483.1| 40S ribosomal protein S9 [Guillardia theta] gi|13794408|gb|AAK39785.1|AF083031_149 40S ribosomal protein S9 [Guillardia theta] Length = 181 Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T+V++ +I AR V H+H+ VN + V+I S K Sbjct: 104 FLERRLQTLVFKNGLARSIHHARILVRHKHISVNDQLVDIPSVMVK 149 >gi|67537266|ref|XP_662407.1| RS9_PODAN 40S ribosomal protein S9 (S7) [Aspergillus nidulans FGSC A4] gi|40741183|gb|EAA60373.1| RS9_PODAN 40S ribosomal protein S9 (S7) [Aspergillus nidulans FGSC A4] gi|259482350|tpe|CBF76749.1| TPA: hypothetical protein similar to 40S ribosomal protein S9 (Broad) [Aspergillus nidulans FGSC A4] Length = 193 Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ SY Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSY 146 >gi|322805525|emb|CBZ03089.1| tyrosyl-tRNA synthetase [Clostridium botulinum H04402 065] Length = 400 Score = 38.1 bits (87), Expect = 0.79, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYGD----ISEKKFRSIFKEADRSRGDTSHNLISFLES 94 + K P ++L AK+ ++ Y+G+ +E F++IF++ + D ++ E+ Sbjct: 283 EEEKVNPRDIKMEL-AKEIVRLYHGEEASVKAEVNFKNIFQQGNIPE-DIDTIKVNLTET 340 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 + ++ +AKF P+ AR+ V V +NG V+ + K D+++V +K Sbjct: 341 NIVDLIIKAKFAPSKNEARRLVKQGAVKINGEKVD-EECKVKNEDILQVGKK 391 >gi|242040777|ref|XP_002467783.1| hypothetical protein SORBIDRAFT_01g033980 [Sorghum bicolor] gi|241921637|gb|EER94781.1| hypothetical protein SORBIDRAFT_01g033980 [Sorghum bicolor] Length = 177 Score = 38.1 bits (87), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 + EK R IF+ ++ + + +FL+ RL TIV++ +I AR + RH+ V Sbjct: 64 LDEKNPRRIFEGENKLDYVLALTVENFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVG 123 Query: 125 GRSVNIGSY 133 + VNI S+ Sbjct: 124 RQLVNIPSF 132 >gi|57231027|gb|AAW47274.1| ribosomal protein S4 [Philodendron hederaceum var. oxycardium] Length = 271 Score = 38.1 bits (87), Expect = 0.79, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ 145 E+R D I R F TI ARQ ++HR + VN V++ ++ GD+I ++ Sbjct: 54 ETRSDVIPVRLHFRETISQARQPISHRRLCVNNGIVSMTHFKVSHGDLISFQE 106 >gi|254167203|ref|ZP_04874056.1| ribosomal protein S4 [Aciduliprofundum boonei T469] gi|197624059|gb|EDY36621.1| ribosomal protein S4 [Aciduliprofundum boonei T469] Length = 187 Score = 38.1 bits (87), Expect = 0.80, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIE 142 L RL TIVY T ARQF+ H H+ + R V I SY R +E ++++ Sbjct: 103 DILRRRLQTIVYLKGLARTPKQARQFIVHGHIAIGDRKVTIPSYLVRKEEEELVD 157 >gi|302668072|ref|XP_003025614.1| hypothetical protein TRV_00254 [Trichophyton verrucosum HKI 0517] gi|291189729|gb|EFE45003.1| hypothetical protein TRV_00254 [Trichophyton verrucosum HKI 0517] Length = 271 Score = 38.1 bits (87), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 182 FLERRLQTCVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 224 >gi|330318726|gb|AEC11023.1| 40S ribosomal protein s9 [Camellia sinensis] Length = 148 Score = 38.1 bits (87), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++ +I AR + RH+ V + VNI S+ Sbjct: 56 NFLERRLQTLVFKTGMAKSIHHARVLIRQRHIRVGRQVVNIASF 99 >gi|225848540|ref|YP_002728703.1| ribosomal large subunit pseudouridine synthase D [Sulfurihydrogenibium azorense Az-Fu1] gi|225644519|gb|ACN99569.1| ribosomal large subunit pseudouridine synthase D [Sulfurihydrogenibium azorense Az-Fu1] Length = 271 Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQ----KSKQLASVLEASQLAERDVP 165 A+ ++ R+VLVN + V I S+ KEGDV+E+ Q +K+L + E + + P Sbjct: 28 AKDIIDSRNVLVNNKRVWIASHTLKEGDVVEILQPQQPATKELKIIYEDEYIVAVNKP 85 >gi|15242498|ref|NP_198801.1| 40S ribosomal protein S9 (RPS9C) [Arabidopsis thaliana] gi|75309179|sp|Q9FLF0|RS92_ARATH RecName: Full=40S ribosomal protein S9-2 gi|10176977|dbj|BAB10209.1| 40S ribosomal protein S9 [Arabidopsis thaliana] gi|21593688|gb|AAM65655.1| 40S ribosomal protein S9-like [Arabidopsis thaliana] gi|90568002|gb|ABD94071.1| At5g39850 [Arabidopsis thaliana] gi|332007100|gb|AED94483.1| 40S ribosomal protein S9-2 [Arabidopsis thaliana] Length = 197 Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL TIV+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|297805734|ref|XP_002870751.1| 40S ribosomal protein S9 [Arabidopsis lyrata subsp. lyrata] gi|297316587|gb|EFH47010.1| 40S ribosomal protein S9 [Arabidopsis lyrata subsp. lyrata] Length = 197 Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL TIV+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|1710780|sp|P52810|RS9_PODAN RecName: Full=40S ribosomal protein S9; AltName: Full=S7 gi|1321917|emb|CAA65433.1| cytoplasmic ribosomal protein S7 [Podospora anserina] Length = 190 Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+VY+ +I AR + RH+ V + VN+ S+ Sbjct: 101 DFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|168183056|ref|ZP_02617720.1| tyrosine--tRNA ligase [Clostridium botulinum Bf] gi|237794488|ref|YP_002862040.1| tyrosyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657] gi|182673865|gb|EDT85826.1| tyrosine--tRNA ligase [Clostridium botulinum Bf] gi|229260524|gb|ACQ51557.1| tyrosine--tRNA ligase [Clostridium botulinum Ba4 str. 657] Length = 400 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Query: 39 QRRKSKPSYFGLQLRAKQKMKKYYG----DISEKKFRSIFKEADRSRGDTSHNLISFLES 94 + K P ++L AK+ ++ Y+G +E F++IF++ + D ++ E+ Sbjct: 283 EEEKVNPRDIKMEL-AKEIVRLYHGKEASTKAEANFKNIFQQGNIPE-DIDTIKVNLTET 340 Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 + ++ +AKF P+ AR+ V V +NG V+ + K D+++V +K Sbjct: 341 NIVDLIVKAKFAPSKNEARRLVKQGAVKINGEKVD-EECKVKNEDILQVGKK 391 >gi|320592633|gb|EFX05063.1| 40S ribosomal protein s9 [Grosmannia clavigera kw1407] Length = 191 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQVVNVPSF 144 >gi|224071319|ref|XP_002303402.1| predicted protein [Populus trichocarpa] gi|222840834|gb|EEE78381.1| predicted protein [Populus trichocarpa] Length = 197 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V++A +I AR + RH V + VNI S+ + Sbjct: 105 NFLERRLQTLVFKAGMAKSIHHARVLIKQRHTRVGRQVVNIPSFMVR 151 >gi|171676139|ref|XP_001903023.1| hypothetical protein [Podospora anserina S mat+] gi|170936135|emb|CAP60795.1| unnamed protein product [Podospora anserina S mat+] Length = 220 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|112984022|ref|NP_001037265.1| ribosomal protein S9 [Bombyx mori] gi|54609299|gb|AAV34865.1| ribosomal protein S9 [Bombyx mori] Length = 194 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL T V++A +I AR + RH+ V + VNI S+ R G I+ KS Sbjct: 105 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 164 >gi|53793731|gb|AAU93594.1| 40S ribosomal protein S9 , putative [Solanum demissum] Length = 197 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++ +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLERRLQTLVFKTGMAKSIHHARVLIRQRHIRVGRQVVNVASF 148 >gi|315115339|gb|ADT80642.1| ribosomal protein S9 [Euphydryas aurinia] Length = 194 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL T V++A +I AR + RH+ V + VNI S+ R G I+ KS Sbjct: 105 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 164 >gi|268306404|gb|ACY95323.1| ribosomal protein S9 [Manduca sexta] Length = 194 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL T V++A +I AR + RH+ V + VNI S+ R G I+ KS Sbjct: 105 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 164 >gi|76573325|gb|ABA46767.1| unknown [Solanum tuberosum] Length = 197 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++ +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLERRLQTLVFKTGMAKSIHHARVLIRQRHIRVGRQVVNVASF 148 >gi|49532932|dbj|BAD26701.1| ribosomal protein S9 [Plutella xylostella] Length = 194 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL T V++A +I AR + RH+ V + VNI S+ R G I+ KS Sbjct: 105 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 164 >gi|302505130|ref|XP_003014786.1| hypothetical protein ARB_07347 [Arthroderma benhamiae CBS 112371] gi|291178092|gb|EFE33883.1| hypothetical protein ARB_07347 [Arthroderma benhamiae CBS 112371] Length = 247 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 158 FLERRLQTCVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 200 >gi|116193753|ref|XP_001222689.1| 40S ribosomal protein S9 [Chaetomium globosum CBS 148.51] gi|88182507|gb|EAQ89975.1| 40S ribosomal protein S9 [Chaetomium globosum CBS 148.51] Length = 191 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|224140087|ref|XP_002323418.1| predicted protein [Populus trichocarpa] gi|118482457|gb|ABK93151.1| unknown [Populus trichocarpa] gi|118489211|gb|ABK96412.1| unknown [Populus trichocarpa x Populus deltoides] gi|222868048|gb|EEF05179.1| predicted protein [Populus trichocarpa] Length = 197 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V++A +I AR + +H+ V + VNI S+ + Sbjct: 105 NFLERRLQTLVFKAGMAKSIHHARVLIKQKHIRVGRQVVNIPSFMVR 151 >gi|309951484|gb|ADO95157.1| ribosomal protein S9 [Antheraea yamamai] Length = 194 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL T V++A +I AR + RH+ V + VNI S+ R G I+ KS Sbjct: 105 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 164 >gi|258573477|ref|XP_002540920.1| 40S ribosomal protein S9 [Uncinocarpus reesii 1704] gi|237901186|gb|EEP75587.1| 40S ribosomal protein S9 [Uncinocarpus reesii 1704] Length = 188 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 100 FLERRLQTCVYRLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 142 >gi|58699943|ref|ZP_00374527.1| ribosomal protein S4 [Wolbachia endosymbiont of Drosophila ananassae] gi|58533543|gb|EAL57958.1| ribosomal protein S4 [Wolbachia endosymbiont of Drosophila ananassae] Length = 45 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 161 ERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ER P+Y+ + ++R P +VPY M+ NLVVEFYSR Sbjct: 1 ERKAPDYLEADSKEHSVKYLRSPQ-YSEVPYSADMEVNLVVEFYSR 45 >gi|329765795|ref|ZP_08257361.1| 30S ribosomal protein S4 [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137638|gb|EGG41908.1| 30S ribosomal protein S4 [Candidatus Nitrosoarchaeum limnia SFB1] Length = 189 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L RL T+V + T + ARQ V H H+++ R VNI SY Sbjct: 100 LLSRRLQTLVTKKLGFKTPYQARQAVIHGHIMIGDRKVNIPSY 142 >gi|71025925|ref|XP_762670.1| ribosomal protein S4 [Theileria parva strain Muguga] gi|68349619|gb|EAN30387.1| ribosomal protein S4, putative [Theileria parva] Length = 205 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 41 RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIV 100 +K K Y +L K+ K D+ +KK + F ++ + + L+SRLD ++ Sbjct: 31 KKKKHIYKEYKLPTNIKILKILYDVKDKKLKYSF---NKFLFVNIYKFLKILKSRLDFVL 87 Query: 101 YRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 + TI ++Q ++H+H+ +N SY K D+I + Sbjct: 88 FNNNLFSTINQSKQNISHKHIFLNNTIARHPSYCVKNLDIIHL 130 >gi|330834007|ref|YP_004408735.1| 30S ribosomal protein S4P [Metallosphaera cuprina Ar-4] gi|329566146|gb|AEB94251.1| 30S ribosomal protein S4P [Metallosphaera cuprina Ar-4] Length = 180 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 21/39 (53%) Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 TIV+R TI+ ARQ + H H+ V GR V Y K Sbjct: 108 TIVHRKGLARTIYQARQLIVHGHIAVGGRKVTSPGYIVK 146 >gi|330039004|ref|XP_003239760.1| 40S ribosomal protein S9 [Cryptomonas paramecium] gi|327206685|gb|AEA38862.1| 40S ribosomal protein S9 [Cryptomonas paramecium] Length = 185 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL TIV+++ ++ AR + RH+ + + V + SY Sbjct: 104 FLERRLQTIVFKSHLAKSVHHARTIILQRHISIKDKVVTVPSY 146 >gi|116780962|gb|ABK21901.1| unknown [Picea sitchensis] gi|224284852|gb|ACN40156.1| unknown [Picea sitchensis] Length = 197 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ + Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVR 151 >gi|255552894|ref|XP_002517490.1| 40S ribosomal protein S9, putative [Ricinus communis] gi|223543501|gb|EEF45032.1| 40S ribosomal protein S9, putative [Ricinus communis] Length = 196 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|255540985|ref|XP_002511557.1| 40S ribosomal protein S9, putative [Ricinus communis] gi|223550672|gb|EEF52159.1| 40S ribosomal protein S9, putative [Ricinus communis] Length = 197 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|148908089|gb|ABR17162.1| unknown [Picea sitchensis] gi|224284136|gb|ACN39805.1| unknown [Picea sitchensis] gi|224284446|gb|ACN39957.1| unknown [Picea sitchensis] gi|224286025|gb|ACN40724.1| unknown [Picea sitchensis] gi|294463673|gb|ADE77363.1| unknown [Picea sitchensis] Length = 197 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ + Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVR 151 >gi|297811659|ref|XP_002873713.1| 40S ribosomal protein S9 [Arabidopsis lyrata subsp. lyrata] gi|297319550|gb|EFH49972.1| 40S ribosomal protein S9 [Arabidopsis lyrata subsp. lyrata] Length = 198 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL TIV+++ +I +R + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSF 148 >gi|119192000|ref|XP_001246606.1| 40S ribosomal protein S9 [Coccidioides immitis RS] gi|303313185|ref|XP_003066604.1| 40S ribosomal protein S9, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106266|gb|EER24459.1| 40S ribosomal protein S9, putative [Coccidioides posadasii C735 delta SOWgp] gi|320036503|gb|EFW18442.1| 40S ribosomal protein S9 [Coccidioides posadasii str. Silveira] Length = 190 Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VYR +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTQVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|255562786|ref|XP_002522398.1| 40S ribosomal protein S9, putative [Ricinus communis] gi|223538283|gb|EEF39890.1| 40S ribosomal protein S9, putative [Ricinus communis] Length = 196 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|255629938|gb|ACU15321.1| unknown [Glycine max] Length = 222 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|255073869|ref|XP_002500609.1| predicted protein [Micromonas sp. RCC299] gi|226515872|gb|ACO61867.1| predicted protein [Micromonas sp. RCC299] Length = 194 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL TIV++ ++ AR + RH+ V + VNI S+ Sbjct: 106 FLERRLQTIVFKLGLAKSVHHARVLIKQRHIRVGKQIVNIPSF 148 >gi|15242241|ref|NP_197024.1| 40S ribosomal protein S9 (RPS9B) [Arabidopsis thaliana] gi|75311670|sp|Q9LXG1|RS91_ARATH RecName: Full=40S ribosomal protein S9-1 gi|7671489|emb|CAB89330.1| 40S ribosomal protein-like [Arabidopsis thaliana] gi|38566648|gb|AAR24214.1| At5g15200 [Arabidopsis thaliana] gi|40824134|gb|AAR92351.1| At5g15200 [Arabidopsis thaliana] gi|110736816|dbj|BAF00367.1| 40S ribosomal protein - like [Arabidopsis thaliana] gi|332004745|gb|AED92128.1| 40S ribosomal protein S9-1 [Arabidopsis thaliana] Length = 198 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL TIV+++ +I +R + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSF 148 >gi|225452773|ref|XP_002283256.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|225456733|ref|XP_002275166.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082890|emb|CBI22191.3| unnamed protein product [Vitis vinifera] gi|297733997|emb|CBI15244.3| unnamed protein product [Vitis vinifera] Length = 197 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|226948471|ref|YP_002803562.1| tyrosine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] gi|226843127|gb|ACO85793.1| tyrosine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] Length = 400 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 6/97 (6%) Query: 54 AKQKMKKYYGD----ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 AK+ ++ Y+G+ +E F++IF++ + D ++ E+ + ++ +AKF P+ Sbjct: 297 AKEIVRLYHGEEASVKAEVNFKNIFQQGNIPE-DIDTIKVNLTETNIVDLIVKAKFAPSK 355 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 AR+ V V +NG V+ + K D+++V +K Sbjct: 356 NEARRLVKQGAVKINGEKVD-EECKVKNEDILQVGKK 391 >gi|255640554|gb|ACU20562.1| unknown [Glycine max] Length = 197 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSF 148 >gi|187780180|ref|ZP_02996653.1| hypothetical protein CLOSPO_03776 [Clostridium sporogenes ATCC 15579] gi|187773805|gb|EDU37607.1| hypothetical protein CLOSPO_03776 [Clostridium sporogenes ATCC 15579] Length = 400 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 16/102 (15%) Query: 54 AKQKMKKYYGD----ISEKKFRSIFKEADRSRGDTSHNLISFLESRLD-----TIVYRAK 104 AK+ ++ Y+G+ +E+ F++IF++ + I LE+ LD ++ +A+ Sbjct: 297 AKEIVRLYHGEEASIKAEENFKNIFQQGNMPED------IDTLEANLDETNIVDLIVKAE 350 Query: 105 FVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 F P+ AR+ V V VNG V+ + K D+++V +K Sbjct: 351 FAPSKNEARRLVKQGAVKVNGEKVD-EECKVKNEDILQVGKK 391 >gi|27260898|gb|AAN86049.1| ribosomal protein S9 [Spodoptera frugiperda] Length = 113 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVIEVKQKS 147 FLE RL T V++A +I AR + RH+ V + VNI S+ R G I+ KS Sbjct: 24 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 83 >gi|169780348|ref|XP_001824638.1| 40S ribosomal protein S9 [Aspergillus oryzae RIB40] gi|238505532|ref|XP_002383988.1| 40S ribosomal protein S9 [Aspergillus flavus NRRL3357] gi|83773378|dbj|BAE63505.1| unnamed protein product [Aspergillus oryzae] gi|220690102|gb|EED46452.1| 40S ribosomal protein S9 [Aspergillus flavus NRRL3357] Length = 193 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 103 DFLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 146 >gi|255626239|gb|ACU13464.1| unknown [Glycine max] Length = 197 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|212223249|ref|YP_002306485.1| 30S ribosomal protein S4 [Thermococcus onnurineus NA1] gi|226695090|sp|B6YSQ1|RS4_THEON RecName: Full=30S ribosomal protein S4P gi|212008206|gb|ACJ15588.1| SSU ribosomal protein S4P [Thermococcus onnurineus NA1] Length = 180 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 92 LESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L+ RL TIV++ TI ARQ + H H+ VNG+ + Y Sbjct: 101 LDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGY 142 >gi|225425738|ref|XP_002276284.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086394|emb|CBI31983.3| unnamed protein product [Vitis vinifera] Length = 197 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|192913000|gb|ACF06608.1| ribosomal protein [Elaeis guineensis] Length = 197 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|160347070|gb|ABX26127.1| ribosomal protein S9 [Haliotis discus discus] Length = 191 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 25/46 (54%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 101 LEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSY 146 >gi|121704904|ref|XP_001270715.1| 40S ribosomal protein S9 [Aspergillus clavatus NRRL 1] gi|119398861|gb|EAW09289.1| 40S ribosomal protein S9 [Aspergillus clavatus NRRL 1] Length = 193 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 104 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 146 >gi|322709543|gb|EFZ01119.1| 40S ribosomal protein S9 (S7) [Metarhizium anisopliae ARSEF 23] Length = 204 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 112 LEDFLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 157 >gi|322696803|gb|EFY88590.1| 40S ribosomal protein S9 [Metarhizium acridum CQMa 102] Length = 191 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 99 LEDFLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|264667325|gb|ACY71248.1| ribosomal protein S9 [Chrysomela tremulae] Length = 194 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 106 FLERRLQTLVFQSGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 148 >gi|188572472|gb|ACD65142.1| putative 40S ribosomal protein RPS9 [Phoronis muelleri] Length = 191 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 25/46 (54%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 101 LEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSY 146 >gi|85375453|ref|YP_459515.1| S4 domain-containing protein [Erythrobacter litoralis HTCC2594] gi|84788536|gb|ABC64718.1| S4 domain protein [Erythrobacter litoralis HTCC2594] Length = 103 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 R+D ++ R +F T AAR + H+ NGR V S+ EGD++ V + V+ Sbjct: 2 RIDLVLCRLRFFKTRSAARNLIEAGHLRANGRRVVQVSHPVAEGDILTVPLGKSVV--VI 59 Query: 155 EASQLAERDVP 165 E L ER P Sbjct: 60 EILHLPERRGP 70 >gi|225378090|ref|ZP_03755311.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM 16841] gi|225210091|gb|EEG92445.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM 16841] Length = 249 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 A +F V VNG+ V SYRCKE D+I V+ Sbjct: 190 ALEFFKAEKVFVNGKCVQNPSYRCKEADIISVR 222 >gi|158187832|gb|ABW23205.1| ribosomal protein rps9 [Eurythoe complanata] Length = 180 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 25/46 (54%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 89 LDDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSY 134 >gi|217075114|gb|ACJ85917.1| unknown [Medicago truncatula] Length = 197 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSF 148 >gi|160550153|gb|ABX44781.1| putative 40S ribosomal protein RPS9 [Flustra foliacea] Length = 194 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 103 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNIPSY 146 >gi|255944121|ref|XP_002562828.1| Pc20g02740 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587563|emb|CAP85603.1| Pc20g02740 [Penicillium chrysogenum Wisconsin 54-1255] Length = 190 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 144 >gi|312214837|emb|CBX94791.1| similar to 40S ribosomal protein S9 [Leptosphaeria maculans] Length = 192 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|189202214|ref|XP_001937443.1| 40S ribosomal protein S9 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984542|gb|EDU50030.1| 40S ribosomal protein S9 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 193 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 103 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 145 >gi|148379187|ref|YP_001253728.1| tyrosyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|153933038|ref|YP_001383564.1| tyrosyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|153936237|ref|YP_001387113.1| tyrosyl-tRNA synthetase [Clostridium botulinum A str. Hall] gi|148288671|emb|CAL82752.1| tyrosyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|152929082|gb|ABS34582.1| tyrosyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|152932151|gb|ABS37650.1| tyrosine--tRNA ligase [Clostridium botulinum A str. Hall] Length = 400 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Query: 40 RRKSKPSYFGLQLRAKQKMKKYYGD----ISEKKFRSIFKEADRSRGDTSHNLISFLESR 95 K P ++L AK+ ++ Y+G+ +E F++IF++ + D ++ E+ Sbjct: 284 EEKVNPRDIKMEL-AKEIVRLYHGEEASVKAEVNFKNIFQQGNIPE-DIDIIKVNLTETN 341 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 + ++ +AKF P+ AR+ V V +NG V+ + K D+++V +K Sbjct: 342 IVDLIVKAKFAPSKNEARRLVKQGAVKINGEKVD-EECKVKNEDILQVGKK 391 >gi|50310015|ref|XP_455021.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644156|emb|CAH00108.1| KLLA0E23673p [Kluyveromyces lactis] Length = 188 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR ++ RH+ V + VNI S+ + Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVR 149 >gi|328874713|gb|EGG23078.1| ribosomal protein [Dictyostelium fasciculatum] Length = 187 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 F+E RL T+V++ +I AR + RH+ V + VN+ SY Sbjct: 101 FMERRLQTLVFKQGLAKSIHHARVLIKGRHIRVGKQLVNVPSY 143 >gi|49524072|emb|CAG47084.1| 40S ribosomal protein S9 [Catharanthus roseus] Length = 197 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQVVNVPSF 148 >gi|302419927|ref|XP_003007794.1| 40S ribosomal protein S9 [Verticillium albo-atrum VaMs.102] gi|261353445|gb|EEY15873.1| 40S ribosomal protein S9 [Verticillium albo-atrum VaMs.102] Length = 191 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|39970971|ref|XP_366876.1| hypothetical protein MGG_02952 [Magnaporthe oryzae 70-15] gi|145017216|gb|EDK01579.1| hypothetical protein MGG_02952 [Magnaporthe oryzae 70-15] Length = 191 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|149210501|ref|XP_001522625.1| hypothetical protein MGCH7_ch7g725 [Magnaporthe oryzae 70-15] gi|86196680|gb|EAQ71318.1| hypothetical protein MGCH7_ch7g725 [Magnaporthe oryzae 70-15] Length = 180 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 91 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 133 >gi|117926972|ref|YP_867589.1| RNA-binding S4 domain-containing protein [Magnetococcus sp. MC-1] gi|117610728|gb|ABK46183.1| heat shock protein Hsp15 [Magnetococcus sp. MC-1] Length = 130 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 R+D ++ A+F T A VN HV +NG+ + S++ K GD +E+ + Q A V+ Sbjct: 10 RIDKWLWAARFFKTRALATDAVNGGHVHLNGQRIK-ASHQVKVGDRLEITKGPVQFALVI 68 Query: 155 EA 156 E Sbjct: 69 EG 70 >gi|313126019|ref|YP_004036289.1| SSU ribosomal protein s4p [Halogeometricum borinquense DSM 11551] gi|312292384|gb|ADQ66844.1| SSU ribosomal protein S4P [Halogeometricum borinquense DSM 11551] Length = 175 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 ++ LE RL T+ YR T +RQF+ H HV+V+G V Sbjct: 98 DVTDILERRLQTVAYRKGLGHTPDQSRQFIVHGHVVVDGARVT 140 >gi|50294438|ref|XP_449630.1| hypothetical protein [Candida glabrata CBS 138] gi|49528944|emb|CAG62606.1| unnamed protein product [Candida glabrata] Length = 194 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR + RH+ V + VNI S+ + Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVR 149 >gi|50289209|ref|XP_447035.1| hypothetical protein [Candida glabrata CBS 138] gi|49526344|emb|CAG59968.1| unnamed protein product [Candida glabrata] Length = 194 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR + RH+ V + VNI S+ + Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVR 149 >gi|289616625|emb|CBI56575.1| unnamed protein product [Sordaria macrospora] Length = 190 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|159488620|ref|XP_001702303.1| ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit [Chlamydomonas reinhardtii] gi|158271208|gb|EDO97033.1| ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit [Chlamydomonas reinhardtii] Length = 190 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T+V++ +I AR + RH+ V + VN+ S+ + Sbjct: 105 DFLERRLQTLVFKQGLAKSIHHARVLIRQRHIRVGKQVVNVPSFMVR 151 >gi|209892902|ref|YP_002290875.1| hypothetical protein BBOV_V000540 [Babesia bovis T2Bo] gi|154795911|gb|EDO05095.1| hypothetical protein BBOV_V000540 [Babesia bovis] Length = 214 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 88 LISFLE---SRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 LI FL+ SR+D I+ ++ T+ RQ + HRH+L+N +++ SY D+I + Sbjct: 70 LIDFLKILKSRVDYILLESELFLTLNHIRQNIIHRHILLNNKTIINYSYIISTNDIIHL 128 >gi|302853414|ref|XP_002958222.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] gi|300256410|gb|EFJ40676.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] Length = 190 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T+V++ +I AR + RH+ V + VN+ S+ + Sbjct: 105 DFLERRLQTLVFKQGLAKSIHHARVLIRQRHIRVGKQVVNVPSFMVR 151 >gi|281500810|pdb|3JYV|D Chain D, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 158 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR + RH+ V + VNI S+ + Sbjct: 99 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVR 144 >gi|146403788|gb|ABQ32300.1| putative 40S ribosomal protein S9 [Artemisia annua] Length = 197 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++ +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLERRLQTLVFKTGMAKSIHHARVLIKQRHIRVGRQVVNVPSF 148 >gi|115744096|ref|XP_791000.2| PREDICTED: similar to Rps9-prov protein [Strongylocentrotus purpuratus] gi|115972878|ref|XP_001177022.1| PREDICTED: similar to Rps9-prov protein [Strongylocentrotus purpuratus] Length = 192 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 101 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSY 144 >gi|6325176|ref|NP_015244.1| Rps9ap [Saccharomyces cerevisiae S288c] gi|6094198|sp|O13516|RS9A_YEAST RecName: Full=40S ribosomal protein S9-A; AltName: Full=RP21; AltName: Full=S13; AltName: Full=YP28; AltName: Full=YS11 gi|313103667|pdb|3IZB|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome gi|315113452|pdb|3O2Z|E Chain E, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The First 80s In The Asymmetric Unit. gi|315113480|pdb|3O30|E Chain E, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The Second 80s In The Asymmetric Unit. gi|218515|dbj|BAA00626.1| YS11 [Saccharomyces cerevisiae] gi|2347168|gb|AAB68268.1| Ypl081wp [Saccharomyces cerevisiae] gi|151942716|gb|EDN61062.1| ribosomal protein S9A [Saccharomyces cerevisiae YJM789] gi|259150077|emb|CAY86880.1| Rps9ap [Saccharomyces cerevisiae EC1118] gi|285815460|tpg|DAA11352.1| TPA: Rps9ap [Saccharomyces cerevisiae S288c] Length = 197 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ ++ AR + RH+ V + VNI S+ Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSF 146 >gi|151946577|gb|EDN64799.1| ribosomal protein S9B [Saccharomyces cerevisiae YJM789] gi|190408660|gb|EDV11925.1| ribosomal protein S9B [Saccharomyces cerevisiae RM11-1a] gi|290878203|emb|CBK39262.1| Rps9bp [Saccharomyces cerevisiae EC1118] Length = 195 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ ++ AR + RH+ V + VNI S+ Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSF 146 >gi|169596444|ref|XP_001791646.1| hypothetical protein SNOG_00985 [Phaeosphaeria nodorum SN15] gi|111071360|gb|EAT92480.1| hypothetical protein SNOG_00985 [Phaeosphaeria nodorum SN15] Length = 192 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|254577891|ref|XP_002494932.1| ZYRO0A13200p [Zygosaccharomyces rouxii] gi|238937821|emb|CAR25999.1| ZYRO0A13200p [Zygosaccharomyces rouxii] Length = 198 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 104 FLERRLQTQVYKLGLAKSIHHARVLITQRHIAVGKQIVNVPSF 146 >gi|6319666|ref|NP_009748.1| Rps9bp [Saccharomyces cerevisiae S288c] gi|585935|sp|P05755|RS9B_YEAST RecName: Full=40S ribosomal protein S9-B; AltName: Full=RP21; AltName: Full=S13; AltName: Full=YP28; AltName: Full=YS11 gi|172795|gb|AAB59327.1| ribosomal protein S13 [Saccharomyces cerevisiae] gi|536552|emb|CAA85151.1| SUP46 [Saccharomyces cerevisiae] gi|575916|gb|AAB60283.1| ribosomal protein S13 [Saccharomyces cerevisiae] gi|285810519|tpg|DAA07304.1| TPA: Rps9bp [Saccharomyces cerevisiae S288c] Length = 195 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR + RH+ V + VNI S+ + Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVR 149 >gi|146304894|ref|YP_001192210.1| 30S ribosomal protein S4P [Metallosphaera sedula DSM 5348] gi|172046964|sp|A4YIN4|RS4_METS5 RecName: Full=30S ribosomal protein S4P gi|145703144|gb|ABP96286.1| SSU ribosomal protein S4P [Metallosphaera sedula DSM 5348] Length = 180 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 21/39 (53%) Query: 98 TIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 TIV+R TI+ ARQ + H H+ V GR + Y K Sbjct: 108 TIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVK 146 >gi|218192116|gb|EEC74543.1| hypothetical protein OsI_10067 [Oryza sativa Indica Group] Length = 292 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL RL T+V++A +I AR + RH+ V + VNI S+ Sbjct: 202 NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSF 245 >gi|51458159|gb|AAU03428.1| ribosomal protein small subunit 4 [Asplenium petrarchae subsp. bivalens] Length = 92 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 25/102 (24%) Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS------------QLAERDV 164 NHR++LVN + +I SYRCK D I V+ + ++ S L+E D Sbjct: 2 NHRNILVNNCNGDIPSYRCKPKDFITVRNRPTSCNALRNKSMVGDKTPGALDRSLSEGDR 61 Query: 165 PEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P + N VA I ++ ++ LVVE+YSR Sbjct: 62 PTGLV----NRVANRESINLNINEL---------LVVEYYSR 90 >gi|209735814|gb|ACI68776.1| 40S ribosomal protein S9 [Salmo salar] Length = 194 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V ++VNI S+ Sbjct: 104 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQAVNIPSF 147 >gi|37784188|gb|AAP44415.1| 40S ribosomal protein S9 [Lactuca sativa] gi|37784190|gb|AAP44416.1| 40S ribosomal protein S9 [Lactuca sativa] gi|37784192|gb|AAP44417.1| 40S ribosomal protein S9 [Lactuca sativa] gi|37784194|gb|AAP44418.1| 40S ribosomal protein S9 [Lactuca serriola] gi|37784196|gb|AAP44419.1| 40S ribosomal protein S9 [Lactuca saligna] gi|37784198|gb|AAP44420.1| 40S ribosomal protein S9 [Lactuca saligna] Length = 143 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 27/47 (57%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V++ +I AR + RH+ V + VN+ S+ + Sbjct: 55 NFLERRLQTLVFKTGMAKSIHHARVLIKQRHIRVGRQVVNVPSFMVR 101 >gi|49258824|pdb|1S1H|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 179 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR + RH+ V + VNI S+ + Sbjct: 86 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVR 131 >gi|260817473|ref|XP_002603611.1| hypothetical protein BRAFLDRAFT_126921 [Branchiostoma floridae] gi|229288931|gb|EEN59622.1| hypothetical protein BRAFLDRAFT_126921 [Branchiostoma floridae] Length = 193 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 102 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNIPSY 145 >gi|159145756|gb|ABW90415.1| putative ribosomal protein S9 [Barentsia elongata] Length = 194 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 103 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSY 146 >gi|85112053|ref|XP_964233.1| 40S ribosomal protein S9 [Neurospora crassa OR74A] gi|28926006|gb|EAA34997.1| 40S ribosomal protein S9 [Neurospora crassa OR74A] gi|88866507|gb|ABD57302.1| unknown [Neurospora crassa] Length = 190 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|310794041|gb|EFQ29502.1| ribosomal protein S4 [Glomerella graminicola M1.001] Length = 191 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|284073116|gb|ADB77797.1| 40S ribosomal protein S9 [Chlamydomonas reinhardtii] Length = 178 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T+V++ +I AR + RH+ V + VN+ S+ + Sbjct: 105 DFLERRLQTLVFKQGLAKSIHHARVLIRQRHIRVGKQVVNVPSFMVR 151 >gi|313103652|pdb|3IZ6|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 195 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL RL T+V++A +I AR + RH+ V + VNI S+ Sbjct: 105 NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSF 148 >gi|44969159|gb|AAS49601.1| ribosomal protein S9 [Scyliorhinus canicula] Length = 173 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 93 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSY 136 >gi|330931906|ref|XP_003303583.1| hypothetical protein PTT_15843 [Pyrenophora teres f. teres 0-1] gi|311320337|gb|EFQ88321.1| hypothetical protein PTT_15843 [Pyrenophora teres f. teres 0-1] Length = 270 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 180 FLERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 222 >gi|118576780|ref|YP_876523.1| ribosomal protein S4 [Cenarchaeum symbiosum A] gi|152060942|sp|A0RY02|RS4_CENSY RecName: Full=30S ribosomal protein S4P gi|118195301|gb|ABK78219.1| ribosomal protein S4 [Cenarchaeum symbiosum A] Length = 205 Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC---KEGDVIEVKQKS 147 L RL TIV + T + ARQ V H H+ ++ R V I SY +EGD+ + Sbjct: 100 LLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSA 159 Query: 148 KQLASVLEASQ 158 A++LE S+ Sbjct: 160 --FATILEKSK 168 >gi|161527832|ref|YP_001581658.1| 30S ribosomal protein S4P [Nitrosopumilus maritimus SCM1] gi|254764603|sp|A9A436|RS4_NITMS RecName: Full=30S ribosomal protein S4P gi|160339133|gb|ABX12220.1| ribosomal protein S4 [Nitrosopumilus maritimus SCM1] Length = 201 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%) Query: 84 TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY--RCKEGDVI 141 T+++L+S RL TIV + T + ARQ V H H+++ R V+I SY +E + I Sbjct: 96 TANDLLS---RRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSI 152 Query: 142 EVKQKSKQLASVLEASQ 158 +SK + VLE ++ Sbjct: 153 HFAPESK-IPQVLEKTK 168 >gi|253748055|gb|EET02423.1| Ribosomal protein S9 [Giardia intestinalis ATCC 50581] Length = 190 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + RL ++V +K ++ AR + RH+ V GR VNI SY Sbjct: 106 IFKRRLQSVVVESKLAKSVHHARNIIKARHISVGGRIVNIPSY 148 >gi|255715507|ref|XP_002554035.1| KLTH0E12826p [Lachancea thermotolerans] gi|238935417|emb|CAR23598.1| KLTH0E12826p [Lachancea thermotolerans] Length = 193 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ ++ AR + RH+ V + VN+ S+ Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQLVNVPSF 146 >gi|172057962|ref|YP_001814422.1| RNA-binding S4 domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990483|gb|ACB61405.1| RNA-binding S4 domain protein [Exiguobacterium sibiricum 255-15] Length = 257 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%) Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R +Q ++ G F F+ A+R R + + + D +YR + PT Sbjct: 40 REQQITRELVGTKCALFFEGGFEGAERQRALIAPDYYELDANDFDIAIYRIHY-PT---- 94 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNH 172 +FV H V G +N+G R K GDV+ ++ + Q A ++V YI N Sbjct: 95 -KFVELSHRQVTGTLLNVGLKRGKFGDVV-IQDQLVQFA--------VAKEVASYIEANV 144 Query: 173 DNMVATFVRI 182 D T +R+ Sbjct: 145 DRAGKTKIRL 154 >gi|296284815|ref|ZP_06862813.1| S4 domain-containing protein [Citromicrobium bathyomarinum JL354] Length = 100 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 RLD + R +FV AAR+ V H+ VNG V S GDV+ + + S L + Sbjct: 2 RLDLALCRLRFVRARSAARRLVESGHLRVNGTRVERVSREITVGDVLTIPRTSGVLVIRI 61 Query: 155 EASQLAERDVP 165 EA L ER P Sbjct: 62 EA--LPERRGP 70 >gi|37784200|gb|AAP44421.1| 40S ribosomal protein S9 [Lactuca saligna] Length = 124 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 27/47 (57%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V++ +I AR + RH+ V + VN+ S+ + Sbjct: 36 NFLERRLQTLVFKTGMAKSIHHARVLIKQRHIRVGRQVVNVPSFMVR 82 >gi|326500076|dbj|BAJ90873.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326515032|dbj|BAJ99877.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 195 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 16/88 (18%) Query: 65 ISEKKFRSIFKEADRSRGDTSHNLIS----------------FLESRLDTIVYRAKFVPT 108 + EK R IF+ A R + L+S FL+ RL TIV++ + Sbjct: 64 LDEKSPRRIFEGAALLRRMNRYGLLSEDQNKLDYVLALTVENFLQRRLQTIVFKNGMAKS 123 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCK 136 I AR + RH+ V + VNI S+ + Sbjct: 124 IHHARVLIRQRHIRVGKQLVNIPSFMVR 151 >gi|242210417|ref|XP_002471051.1| ribosomal protein S9 [Postia placenta Mad-698-R] gi|242217357|ref|XP_002474479.1| 40S ribosomal protein S9 [Postia placenta Mad-698-R] gi|220726394|gb|EED80345.1| 40S ribosomal protein S9 [Postia placenta Mad-698-R] gi|220729841|gb|EED83708.1| ribosomal protein S9 [Postia placenta Mad-698-R] Length = 192 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++A +I AR + RH+ V + VN+ S+ Sbjct: 103 DFLERRLQTQVFKAGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 146 >gi|45190352|ref|NP_984606.1| AEL255Wp [Ashbya gossypii ATCC 10895] gi|44983248|gb|AAS52430.1| AEL255Wp [Ashbya gossypii ATCC 10895] Length = 188 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 25/46 (54%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T VY+ ++ AR + RH+ V + VN+ S+ + Sbjct: 104 FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNVPSFMVR 149 >gi|168050227|ref|XP_001777561.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671046|gb|EDQ57604.1| predicted protein [Physcomitrella patens subsp. patens] Length = 197 Score = 36.2 bits (82), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL TIV+++ +I AR + RH+ V + V++ S+ + Sbjct: 105 NFLERRLQTIVFKSGMAKSIHHARVLIKQRHIRVGKQIVDVPSFMVR 151 >gi|167042196|gb|ABZ06928.1| putative S4 domain protein [uncultured marine crenarchaeote HF4000_ANIW93I24] Length = 204 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 18/143 (12%) Query: 12 DRRIGENLWGRPKSPVN-------TRSYGP-GLHGQRR----KSKPSYFGLQLRA----K 55 D + +W RPK P+N + G GL +R +++ S LQ R+ + Sbjct: 3 DPKTPRRVWKRPKRPLNYDLMMDELKILGTFGLKTKRELWKTQTELSRVRLQARSLLALR 62 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNL--ISFLESRLDTIVYRAKFVPTIFAAR 113 Q++++ I + I S D NL L RL TI + + T + AR Sbjct: 63 QEIRERKEPILIQSLSKIGLVDQNSTLDDVLNLQVTDLLSRRLQTITQKKLYFKTPYQAR 122 Query: 114 QFVNHRHVLVNGRSVNIGSYRCK 136 Q + H H+++ V I SY K Sbjct: 123 QAIVHGHIMIGDSVVTIPSYIVK 145 >gi|281202989|gb|EFA77190.1| ribosomal protein 1024 [Polysphondylium pallidum PN500] Length = 217 Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 25/43 (58%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 F+E RL T+V++ +I AR + RH+ V + VN+ S+ Sbjct: 132 FMERRLQTMVFKQGLAKSIHHARCLIKGRHIRVGKQLVNVASF 174 >gi|156056563|ref|XP_001594205.1| 40S ribosomal protein S9 [Sclerotinia sclerotiorum 1980] gi|154701798|gb|EDO01537.1| 40S ribosomal protein S9 [Sclerotinia sclerotiorum 1980 UF-70] Length = 191 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 F+E RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FMERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|115450807|ref|NP_001049004.1| Os03g0154700 [Oryza sativa Japonica Group] gi|115486179|ref|NP_001068233.1| Os11g0602600 [Oryza sativa Japonica Group] gi|77551802|gb|ABA94599.1| 40S ribosomal protein S9, putative, expressed [Oryza sativa Japonica Group] gi|77551804|gb|ABA94601.1| 40S ribosomal protein S9, putative, expressed [Oryza sativa Japonica Group] gi|108706253|gb|ABF94048.1| 40S ribosomal protein S9, putative, expressed [Oryza sativa Japonica Group] gi|108864567|gb|ABG22548.1| 40S ribosomal protein S9, putative, expressed [Oryza sativa Japonica Group] gi|113547475|dbj|BAF10918.1| Os03g0154700 [Oryza sativa Japonica Group] gi|113645455|dbj|BAF28596.1| Os11g0602600 [Oryza sativa Japonica Group] gi|125534929|gb|EAY81477.1| hypothetical protein OsI_36650 [Oryza sativa Indica Group] gi|125577658|gb|EAZ18880.1| hypothetical protein OsJ_34422 [Oryza sativa Japonica Group] gi|149390861|gb|ABR25448.1| 40S ribosomal protein S9 [Oryza sativa Indica Group] gi|215678994|dbj|BAG96424.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692450|dbj|BAG87870.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704252|dbj|BAG93092.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737426|dbj|BAG96556.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737741|dbj|BAG96871.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740779|dbj|BAG96935.1| unnamed protein product [Oryza sativa Japonica Group] gi|218186015|gb|EEC68442.1| hypothetical protein OsI_36651 [Oryza sativa Indica Group] gi|222616230|gb|EEE52362.1| hypothetical protein OsJ_34424 [Oryza sativa Japonica Group] gi|222624211|gb|EEE58343.1| hypothetical protein OsJ_09456 [Oryza sativa Japonica Group] Length = 195 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL RL T+V++A +I AR + RH+ V + VNI S+ Sbjct: 105 NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSF 148 >gi|46129441|ref|XP_389072.1| RS9_PODAN 40S ribosomal protein S9 (S7) [Gibberella zeae PH-1] Length = 191 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE------------ADRSRG 82 G +G R K + GL L ++ + + EK + +F+ D SR Sbjct: 30 GEYGLRNKREVWRVGLTLSKIRRAARQLLTLDEKDPKRLFEGNALIRRLVRVGVLDESRM 89 Query: 83 DTSHNLI----SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + L FLE RL T V++ +I AR + RH+ V + VN+ S+ Sbjct: 90 KLDYVLALKIEDFLERRLQTCVWKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|226503021|ref|NP_001149705.1| 40S ribosomal protein S9 [Zea mays] gi|195629612|gb|ACG36447.1| 40S ribosomal protein S9 [Zea mays] Length = 193 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL+ RL TIV++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|166952357|gb|ABZ04261.1| ribosomal protein rps9 [Lineus viridis] Length = 194 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 L F+E RL T V++ +I AR + RH+ V + VNI SY Sbjct: 101 LEDFMERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRTQVVNIPSY 146 >gi|154291725|ref|XP_001546443.1| 40S ribosomal protein S9 [Botryotinia fuckeliana B05.10] gi|150846653|gb|EDN21846.1| 40S ribosomal protein S9 [Botryotinia fuckeliana B05.10] Length = 191 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 F+E RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FMERRLQTCVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|302919108|ref|XP_003052792.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256733732|gb|EEU47079.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 191 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 16/115 (13%) Query: 35 GLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKE------------ADRSRG 82 G +G R K + GL L ++ + + EK + +F+ D SR Sbjct: 30 GEYGLRNKREVWRVGLTLSKIRRAARQLLTLDEKDPKRLFEGNALIRRLVRVGVLDESRM 89 Query: 83 DTSHNLI----SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + L FLE RL T V++ +I AR + RH+ V + VN+ S+ Sbjct: 90 KLDYVLALKIEDFLERRLQTCVWKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|121544013|gb|ABM55670.1| putative ribosomal protein S9 [Maconellicoccus hirsutus] Length = 195 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL+T V++ +I AR + RH+ V+ + VN+ S+ Sbjct: 105 DFLERRLETQVFKLGLAKSIHHARVLIRQRHIRVHKQVVNVPSF 148 >gi|7707685|dbj|BAA95356.1| ribosomal protein S4 [Clostridium perfringens] Length = 80 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE--RDVPEYISVNHDNMVATFV 180 VNG+ V+I S++ DVI V +KS+ AE + +P+++ N +N V Sbjct: 1 VNGKKVDIASFKVSVNDVITVCEKSRGSERF---KMFAENPKALPKWLEANVENFEGKVV 57 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ +D+ PV L+VE YS+ Sbjct: 58 AEPAR-EDIDVPV--NETLIVELYSK 80 >gi|303274947|ref|XP_003056784.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461136|gb|EEH58429.1| predicted protein [Micromonas pusilla CCMP1545] Length = 196 Score = 35.8 bits (81), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V++ ++ AR + RH+ V + VN+ S+ Sbjct: 105 AFLERRLQTLVFKLGLAKSVHHARVLIRQRHIRVGKQIVNVPSF 148 >gi|153939021|ref|YP_001390553.1| tyrosyl-tRNA synthetase [Clostridium botulinum F str. Langeland] gi|152934917|gb|ABS40415.1| tyrosine--tRNA ligase [Clostridium botulinum F str. Langeland] gi|295318634|gb|ADF99011.1| tyrosine--tRNA ligase [Clostridium botulinum F str. 230613] Length = 400 Score = 35.8 bits (81), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 6/97 (6%) Query: 54 AKQKMKKYYGD----ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 AK+ ++ Y+G+ +E F++IF++ + D ++ ++ + ++ +AKF P+ Sbjct: 297 AKEIVRLYHGEEASVKAEANFKNIFQQGNIPE-DIDTIKVNLTKTNIVDLIVKAKFAPSK 355 Query: 110 FAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 AR+ V V +NG V+ + K D+++V +K Sbjct: 356 NEARRLVKQGAVKINGEKVD-EECKVKNEDILQVGKK 391 >gi|308080984|ref|NP_001183701.1| hypothetical protein LOC100502294 [Zea mays] gi|238014008|gb|ACR38039.1| unknown [Zea mays] Length = 112 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FL+ RL TIV++ +I AR + RH+ V + VNI S+ + Sbjct: 24 NFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVR 70 >gi|149391809|gb|ABR25839.1| 40S ribosomal protein S9 [Oryza sativa Indica Group] Length = 116 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FL RL T+V++A +I AR + RH+ V + VNI S+ + Sbjct: 26 NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVR 72 >gi|212721578|ref|NP_001131442.1| hypothetical protein LOC100192774 [Zea mays] gi|195617050|gb|ACG30355.1| 40S ribosomal protein S9 [Zea mays] Length = 193 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL+ RL TIV++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|242050970|ref|XP_002463229.1| hypothetical protein SORBIDRAFT_02g040120 [Sorghum bicolor] gi|241926606|gb|EER99750.1| hypothetical protein SORBIDRAFT_02g040120 [Sorghum bicolor] Length = 194 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL+ RL TIV++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|242050962|ref|XP_002463225.1| hypothetical protein SORBIDRAFT_02g040080 [Sorghum bicolor] gi|241926602|gb|EER99746.1| hypothetical protein SORBIDRAFT_02g040080 [Sorghum bicolor] Length = 194 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL+ RL TIV++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|224000067|ref|XP_002289706.1| RS9, ribosomal protein 9 [Thalassiosira pseudonana CCMP1335] gi|220974914|gb|EED93243.1| RS9, ribosomal protein 9 [Thalassiosira pseudonana CCMP1335] Length = 190 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 LE RL T V++ +I AR + RH+ V G+ VN+ S+ Sbjct: 106 LLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSF 148 >gi|296423828|ref|XP_002841454.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637694|emb|CAZ85645.1| unnamed protein product [Tuber melanosporum] Length = 195 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 106 FLERRLQTQVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 148 >gi|84489670|ref|YP_447902.1| 30S ribosomal protein S4P [Methanosphaera stadtmanae DSM 3091] gi|121697850|sp|Q2NFZ4|RS4_METST RecName: Full=30S ribosomal protein S4P gi|84372989|gb|ABC57259.1| 30S ribosomal protein S4P [Methanosphaera stadtmanae DSM 3091] Length = 182 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 N+ L RL ++V++ T AR FV H H+ +NG+ +N + ++ D Sbjct: 96 NVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKAD 148 >gi|167526531|ref|XP_001747599.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774045|gb|EDQ87679.1| predicted protein [Monosiga brevicollis MX1] Length = 196 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 25/47 (53%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 FLE RL T V++ +I AR + RH+ V + VN+ SY + Sbjct: 109 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNVPSYMVR 155 >gi|194691526|gb|ACF79847.1| unknown [Zea mays] Length = 112 Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FL+ RL TIV++ +I AR + RH+ V + VNI S+ + Sbjct: 24 NFLQRRLQTIVFKNGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVR 70 >gi|226531716|ref|NP_001149240.1| 40S ribosomal protein S9 [Zea mays] gi|195622330|gb|ACG32995.1| 40S ribosomal protein S9 [Zea mays] gi|195625718|gb|ACG34689.1| 40S ribosomal protein S9 [Zea mays] gi|219885117|gb|ACL52933.1| unknown [Zea mays] Length = 194 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL RL T+V++A +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLARRLQTLVFKAGMAKSIHHARVLIKQRHIRVGRQIVNVPSF 148 >gi|313219379|emb|CBY16469.1| unnamed protein product [Oikopleura dioica] Length = 100 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VN+ SY Sbjct: 13 DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNVPSY 56 >gi|225559283|gb|EEH07566.1| 40S ribosomal protein S9 [Ajellomyces capsulatus G186AR] Length = 191 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTQVYQLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 144 >gi|195623226|gb|ACG33443.1| 40S ribosomal protein S9 [Zea mays] Length = 194 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL RL T+V++A +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLARRLQTLVFKAGMAKSIHHARVLIKQRHIRVGRQIVNVPSF 148 >gi|261204665|ref|XP_002629546.1| 40S ribosomal protein S9 [Ajellomyces dermatitidis SLH14081] gi|239587331|gb|EEQ69974.1| 40S ribosomal protein S9 [Ajellomyces dermatitidis SLH14081] gi|239614129|gb|EEQ91116.1| 40S ribosomal protein S9 [Ajellomyces dermatitidis ER-3] gi|327353900|gb|EGE82757.1| 40S ribosomal protein S9 [Ajellomyces dermatitidis ATCC 18188] Length = 191 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTQVYQLGLAKSIHHARVLIRQRHIRVGKQIVNVPSF 144 >gi|242083466|ref|XP_002442158.1| hypothetical protein SORBIDRAFT_08g015270 [Sorghum bicolor] gi|241942851|gb|EES15996.1| hypothetical protein SORBIDRAFT_08g015270 [Sorghum bicolor] Length = 195 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FL RL T+V++A +I AR + RH+ V + VN+ S+ Sbjct: 105 NFLARRLQTLVFKAGMAKSIHHARVLIKQRHIRVGRQIVNVPSF 148 >gi|91983770|gb|ABE68882.1| 40S ribosomal protein S9 [Rhizoctonia solani] Length = 203 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSI-FKEADRSRGD--TSHNLISFLESRLDTIVYRAKFV 106 L+L AK + + G+ ++ I + +R R D + + FLE RL T V+++ Sbjct: 60 LKLEAKDPKRLFEGNALIRRLVRIGVLDENRMRLDYVLALKIEDFLERRLQTQVFKSGLA 119 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSY 133 +I AR + RH+ V + VN+ S+ Sbjct: 120 KSIHHARVLIRQRHIRVGKQIVNVPSF 146 >gi|145350813|ref|XP_001419792.1| Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] gi|144580024|gb|ABO98085.1| Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] Length = 194 Score = 35.4 bits (80), Expect = 5.1, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T+V++ ++ AR + RH+ V + VN+ S+ Sbjct: 105 QFLERRLQTLVFKLGLAKSVHHARVLIRQRHIRVGKQIVNVPSF 148 >gi|326632112|gb|ADZ99058.1| ribosomal protein S4 [Physarum polycephalum] Length = 273 Score = 35.4 bits (80), Expect = 5.3, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 24/120 (20%) Query: 91 FLESRLDTIVYRAKFVPTIFAAR-------------------QFVNHRHVLVNGRSVNIG 131 FLE R D + +RA FV I AR FV + +L + I Sbjct: 141 FLEHRADVLFFRANFVDNINQARLFLKTKQLSYLVPKHRKKNSFVTQKIILKPYTQIPIF 200 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPY 191 ++ K ++ K+K K L L + + P+++ VN+ M+A F+R + +D+ Y Sbjct: 201 TF-FKLSPLLAFKRK-KTLYHALRSRNKLIANAPKWLYVNYKLMIALFIR---NARDIKY 255 >gi|295667371|ref|XP_002794235.1| 40S ribosomal protein S9 [Paracoccidioides brasiliensis Pb01] gi|225680017|gb|EEH18301.1| 40S ribosomal protein S9-2 [Paracoccidioides brasiliensis Pb03] gi|226286341|gb|EEH41907.1| 40S ribosomal protein S9 [Paracoccidioides brasiliensis Pb01] gi|226291800|gb|EEH47228.1| 40S ribosomal protein S9 [Paracoccidioides brasiliensis Pb18] Length = 191 Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTQVYQLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 144 >gi|168003592|ref|XP_001754496.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694117|gb|EDQ80466.1| predicted protein [Physcomitrella patens subsp. patens] Length = 198 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + V++ S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGKQIVDVPSF 148 >gi|154273951|ref|XP_001537827.1| 40S ribosomal protein S9 [Ajellomyces capsulatus NAm1] gi|150415435|gb|EDN10788.1| 40S ribosomal protein S9 [Ajellomyces capsulatus NAm1] Length = 178 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 24/43 (55%) Query: 91 FLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T VY+ +I AR + RH+ V + VN+ S+ Sbjct: 102 FLERRLQTQVYQLGLAKSIHHARVLIKQRHIRVGKQIVNVPSF 144 >gi|168003337|ref|XP_001754369.1| predicted protein [Physcomitrella patens subsp. patens] gi|168017417|ref|XP_001761244.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687584|gb|EDQ73966.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694471|gb|EDQ80819.1| predicted protein [Physcomitrella patens subsp. patens] Length = 198 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V+++ +I AR + RH+ V + V++ S+ + Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGKQIVDVPSFMVR 151 >gi|168029425|ref|XP_001767226.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681481|gb|EDQ67907.1| predicted protein [Physcomitrella patens subsp. patens] Length = 198 Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 28/47 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T+V+++ +I AR + RH+ V + V++ S+ + Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGKQIVDVPSFMVR 151 >gi|168019716|ref|XP_001762390.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686468|gb|EDQ72857.1| predicted protein [Physcomitrella patens subsp. patens] Length = 198 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 27/44 (61%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T+V+++ +I AR + RH+ V + V++ S+ Sbjct: 105 NFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGKQIVDVPSF 148 >gi|70721338|dbj|BAE07008.1| PHA synthase [uncultured bacterium] Length = 161 Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +GL+ ++ +K ++ K +S+ S G T L+S+L ++ DT V A F+ Sbjct: 41 WGLEAYVREIIKAIDATLAITKQKSLNVSGACSGGITQAMLLSYLAAKKDTRVNAATFMV 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 + AR + ++ RS+ + R K+ ++ + S+ A Sbjct: 101 CVLDARPEDSEVRAFISPRSIKLAKARSKQKGILTGQDLSRTFA 144 >gi|47027041|gb|AAT08735.1| 40S ribosomal protein S9 [Hyacinthus orientalis] Length = 197 Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCK 136 +FLE RL T V++ +I AR + RH+ V + VN+ S+ K Sbjct: 105 NFLERRLQTQVFKTGMAKSIHHARVLIRQRHIRVGRQVVNVPSFLVK 151 >gi|158563818|gb|ABW74360.1| ribosomal protein S9 [Modiolus modiolus] Length = 120 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 FLE RL T V++ +I AR + RH+ V + VNI SY Sbjct: 74 DFLERRLQTQVFKLGLAKSIHHARVVIRQRHIRVRKQVVNIPSY 117 >gi|70721278|dbj|BAE06978.1| PHA synthase [uncultured bacterium] Length = 161 Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +GL+ ++ +K ++ K +S+ S G T L+S+L ++ DT V A F+ Sbjct: 41 WGLEAYVREIIKAIDATLAITKQKSLNVSGACSGGITQAMLLSYLAAKKDTRVNAATFMV 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 + AR + ++ RS+ + R K+ ++ + S+ A Sbjct: 101 CVLDARPEDSEVGAFISPRSIKLAKARSKQKGILTGQDLSRTFA 144 >gi|70721344|dbj|BAE07011.1| PHA synthase [uncultured bacterium] Length = 161 Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +GL+ ++ +K ++ K +S+ S G T L+S+L ++ DT V A F+ Sbjct: 41 WGLEAYVREIIKAIDATLAITKQKSLNVSGACSGGITQAMLLSYLAAKKDTRVNAATFMV 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 + AR + ++ RS+ + R K+ ++ + S+ A Sbjct: 101 CVLDARPEDSEVGAFISPRSIKLAKARSKQKGILTGQDLSRTFA 144 >gi|192913014|gb|ACF06615.1| 40S ribosomal protein S9 [Elaeis guineensis] Length = 197 Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 +FLE RL T V+++ +I AR + RH+ V + VNI S+ Sbjct: 105 NFLERRLQTQVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148 >gi|91983753|gb|ABE68880.1| 40S ribosomal protein S9 [Rhizoctonia solani] Length = 176 Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Query: 50 LQLRAKQKMKKYYGD-ISEKKFRSIFKEADRSRGD--TSHNLISFLESRLDTIVYRAKFV 106 L+L AK + + G+ + + R + +R R D + + FLE RL T V+++ Sbjct: 60 LKLEAKDPKRLFEGNALIHRLVRIGVLDENRMRLDYVLALKIEDFLERRLQTQVFKSGLA 119 Query: 107 PTIFAARQFVNHRHVLVNGRSVNIGSY 133 +I AR + RH+ V + VN+ S+ Sbjct: 120 KSIHHARVLIRQRHIRVGKQIVNVPSF 146 >gi|70721264|dbj|BAE06971.1| PHA synthase [uncultured bacterium] Length = 161 Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +GL+ ++ +K ++ K +S+ S G T L+S+L ++ DT V A F+ Sbjct: 41 WGLEAYVREIIKAIDATLAITKQKSLNVSGACSGGITQAMLLSYLAAKKDTRVNAATFMV 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 + AR + ++ RS+ + R K+ ++ + S+ A Sbjct: 101 CVLDARPEDSEVGAFISPRSIKLAKARSKQKGILTGQDLSRTFA 144 >gi|70721334|dbj|BAE07006.1| PHA synthase [uncultured bacterium] Length = 161 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +GL+ ++ +K ++ K +S+ S G T L+S+L ++ DT V A F+ Sbjct: 41 WGLEAYVREIIKAIDATLAITKQKSLNVSGACSGGITQAMLLSYLAAKKDTRVNAATFMV 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 + AR + ++ RS+ + R K+ ++ + S+ A Sbjct: 101 CVLDARPEDSEVGAFISPRSIKLAKARSKQKGILTGQDLSRTFA 144 >gi|70721202|dbj|BAE06940.1| PHA synthase [uncultured bacterium] Length = 161 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 49/104 (47%) Query: 48 FGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVP 107 +GL+ ++ +K ++ K +S+ S G T L+S+L ++ DT V A F+ Sbjct: 41 WGLEAYVREIIKAIDATLAITKQKSLNVSGACSGGITQAMLLSYLAAKKDTRVNAATFMV 100 Query: 108 TIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLA 151 + AR + ++ RS+ + R K+ ++ + S+ A Sbjct: 101 CVLDARPEDSEVGAFISPRSIKLAKARSKQKGILTGQDLSRTFA 144 >gi|71021869|ref|XP_761165.1| hypothetical protein UM05018.1 [Ustilago maydis 521] gi|46100645|gb|EAK85878.1| hypothetical protein UM05018.1 [Ustilago maydis 521] Length = 464 Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 10/105 (9%) Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 K Y ++++K + +E D T+ + +E RLD +V+R+ F + + +R V Sbjct: 130 KSYATVTQQK---VVEEMDPM--PTASLFMRDVERRLDVVVFRSCFARSAYESRSMVVQG 184 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQK-----SKQLASVLEASQL 159 V +NG + + + GD+I V+ S++LA +A +L Sbjct: 185 KVTLNGVKCSNPNQLLEPGDLISVQPSAVPMLSEELAKRAKAQKL 229 Searching..................................................done Results from round 2 >gi|239831713|ref|ZP_04680042.1| ribosomal protein S4 [Ochrobactrum intermedium LMG 3301] gi|239823980|gb|EEQ95548.1| ribosomal protein S4 [Ochrobactrum intermedium LMG 3301] Length = 263 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 150/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 59 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 118 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 119 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 178 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQL VLEA QLAERDVP+YI V+H+ +VAT+ Sbjct: 179 VNVNGRRVNIQSYRLKAGDVVEVREKSKQLVIVLEAVQLAERDVPDYIEVDHNKLVATYS 238 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V M+PNLVVEFYSR Sbjct: 239 RVP-TLTDVPYAVQMEPNLVVEFYSR 263 >gi|13470363|ref|NP_101930.1| 30S ribosomal protein S4 [Mesorhizobium loti MAFF303099] gi|26399462|sp|Q98NP5|RS4_RHILO RecName: Full=30S ribosomal protein S4 gi|14021103|dbj|BAB47716.1| 30S ribosomal protein S4 [Mesorhizobium loti MAFF303099] Length = 205 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 154/206 (74%), Positives = 176/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD+SEK+FR +++EADR +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVSEKQFRKVYEEADRRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCK GDVIEV++KSKQL VLE+ LAERDVP+YI +H+ MVATF Sbjct: 121 VNVNGKRVNIGSYRCKPGDVIEVREKSKQLVIVLESVGLAERDVPDYIEADHNKMVATFS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+PNLVVEFYSR Sbjct: 181 RIPG-LADVPFAVQMEPNLVVEFYSR 205 >gi|190891998|ref|YP_001978540.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 652] gi|218509562|ref|ZP_03507440.1| 30S ribosomal protein S4 [Rhizobium etli Brasil 5] gi|218516811|ref|ZP_03513651.1| 30S ribosomal protein S4 [Rhizobium etli 8C-3] gi|218679612|ref|ZP_03527509.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 894] gi|226699110|sp|B3PPT3|RS4_RHIE6 RecName: Full=30S ribosomal protein S4 gi|190697277|gb|ACE91362.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 652] gi|327190532|gb|EGE57626.1| 30S ribosomal protein S4 [Rhizobium etli CNPAF512] Length = 205 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 157/206 (76%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL +VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVTVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|260432821|ref|ZP_05786792.1| ribosomal protein S4 [Silicibacter lacuscaerulensis ITI-1157] gi|260416649|gb|EEX09908.1| ribosomal protein S4 [Silicibacter lacuscaerulensis ITI-1157] Length = 206 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 150/206 (72%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ KSKQLA VLEA LAERDVP+Y+ V+H M ATFV Sbjct: 121 VKVNGKRVNIPSYRVKEGDVIEVRDKSKQLAVVLEAVALAERDVPDYLDVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P SL DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-SLGDVPYPVMMEPNLVVEFYAK 205 >gi|209549541|ref|YP_002281458.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226699111|sp|B5ZRF1|RS4_RHILW RecName: Full=30S ribosomal protein S4 gi|209535297|gb|ACI55232.1| RNA-binding S4 domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 205 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 157/206 (76%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|86357927|ref|YP_469819.1| 30S ribosomal protein S4 [Rhizobium etli CFN 42] gi|123511793|sp|Q2K7U4|RS4_RHIEC RecName: Full=30S ribosomal protein S4 gi|86282029|gb|ABC91092.1| 30S ribosomal protein S4 [Rhizobium etli CFN 42] Length = 205 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 156/206 (75%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EA R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEAARRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL +VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVTVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|319784054|ref|YP_004143530.1| ribosomal protein S4 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169942|gb|ADV13480.1| ribosomal protein S4 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 205 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 176/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD+SEK+FR +++EADR +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVSEKQFRKVYEEADRRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCK GDV+E+++KSKQL VLEA LAERDVP+YI +H+ MVATF Sbjct: 121 VNVNGKRVNIGSYRCKPGDVVEIREKSKQLVIVLEAVGLAERDVPDYIEADHNKMVATFS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+PNLVVEFYSR Sbjct: 181 RIPG-LADVPFAVQMEPNLVVEFYSR 205 >gi|241204876|ref|YP_002975972.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858766|gb|ACS56433.1| ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 205 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 157/206 (76%), Positives = 177/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLEA LAERDVP+YI V+H MVATF Sbjct: 121 VSVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLEAVSLAERDVPDYIEVDHSKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|116252370|ref|YP_768208.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. viciae 3841] gi|152112254|sp|Q1MG11|RS4_RHIL3 RecName: Full=30S ribosomal protein S4 gi|115257018|emb|CAK08112.1| putative 30S ribosomal protein S4 [Rhizobium leguminosarum bv. viciae 3841] Length = 205 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 157/206 (76%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EADR +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEADRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLEA LAERDVP+YI V+H+ MVATF Sbjct: 121 VSVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLEAVSLAERDVPDYIEVDHNKMVATFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|260460839|ref|ZP_05809089.1| ribosomal protein S4 [Mesorhizobium opportunistum WSM2075] gi|259033416|gb|EEW34677.1| ribosomal protein S4 [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 297 bits (761), Expect = 6e-79, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 176/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD+SEK+FR +++EADR +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVSEKQFRKVYEEADRRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCK GDV+EV++KSKQL VLE+ LAERDVP+YI +H+ MVATF Sbjct: 121 VNVNGKRVNIGSYRCKPGDVVEVREKSKQLVIVLESVGLAERDVPDYIEADHNKMVATFS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+PNLVVEFYSR Sbjct: 181 RIPG-LADVPFAVQMEPNLVVEFYSR 205 >gi|254466555|ref|ZP_05079966.1| ribosomal protein S4 [Rhodobacterales bacterium Y4I] gi|206687463|gb|EDZ47945.1| ribosomal protein S4 [Rhodobacterales bacterium Y4I] Length = 206 Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV+ KSKQ+ +VLEA QLAERDVP+YI +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVRDKSKQMVAVLEAVQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ L DVPYPVIM+PNLVVEFY++ Sbjct: 181 RTPA-LGDVPYPVIMEPNLVVEFYAK 205 >gi|99081947|ref|YP_614101.1| 30S ribosomal protein S4 [Ruegeria sp. TM1040] gi|122984198|sp|Q1GES7|RS4_SILST RecName: Full=30S ribosomal protein S4 gi|99038227|gb|ABF64839.1| SSU ribosomal protein S4P [Ruegeria sp. TM1040] Length = 206 Score = 296 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ +VLEA QLAERDVP+YI V+H + ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQNVAVLEAVQLAERDVPDYIEVDHSKLTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAPG-LADVPYPVVMEPNLVVEFYAK 205 >gi|259416699|ref|ZP_05740619.1| ribosomal protein S4 [Silicibacter sp. TrichCH4B] gi|259348138|gb|EEW59915.1| ribosomal protein S4 [Silicibacter sp. TrichCH4B] Length = 206 Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ +VLEA QLAERDVP+YI V+H + ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQNVAVLEAVQLAERDVPDYIEVDHSKLTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAPG-LADVPYPVMMEPNLVVEFYAK 205 >gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] gi|254039864|gb|ACT56660.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] Length = 206 Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK Sbjct: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH Sbjct: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV Sbjct: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIPSSLKDVPYPVIMQPNLVVEFYSR Sbjct: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 >gi|56698013|ref|YP_168384.1| 30S ribosomal protein S4 [Ruegeria pomeroyi DSS-3] gi|62287189|sp|Q5LNM2|RS4_SILPO RecName: Full=30S ribosomal protein S4 gi|56679750|gb|AAV96416.1| ribosomal protein S4 [Ruegeria pomeroyi DSS-3] Length = 206 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV+++SKQLASVLEA LAERDVP+Y+ V+H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVRERSKQLASVLEAVSLAERDVPDYLEVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPY V+M+PNLVVE+Y++ Sbjct: 181 RTPH-LGDVPYAVVMEPNLVVEYYAK 205 >gi|222148432|ref|YP_002549389.1| 30S ribosomal protein S4 [Agrobacterium vitis S4] gi|254764562|sp|B9JVV3|RS4_AGRVS RecName: Full=30S ribosomal protein S4 gi|221735420|gb|ACM36383.1| 30S ribosomal protein S4 [Agrobacterium vitis S4] Length = 205 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 158/206 (76%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRASSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+ + EA+R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRATYDEANRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV+QKSKQLA VLEA+QLAERDVP+YI V+H+ MVATFV Sbjct: 121 VSVNGVKVNIGSYRCKAGDVIEVRQKSKQLAIVLEATQLAERDVPDYIEVDHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY VIM+P LVVEFYSR Sbjct: 181 RVP-TLSDVPYAVIMEPQLVVEFYSR 205 >gi|218462357|ref|ZP_03502448.1| 30S ribosomal protein S4 [Rhizobium etli Kim 5] Length = 205 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 155/206 (75%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+IF EA R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRAIFAEASRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL +VLEA LAERDVP+YI V+H+ MVAT+ Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVTVLEAVSLAERDVPDYIEVDHNKMVATYG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVP+PV+M+P+LVVEFYSR Sbjct: 181 RVP-TLSDVPFPVVMEPHLVVEFYSR 205 >gi|254475661|ref|ZP_05089047.1| ribosomal protein S4 [Ruegeria sp. R11] gi|214029904|gb|EEB70739.1| ribosomal protein S4 [Ruegeria sp. R11] Length = 206 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+ ++LEA QLAERDVP+YI +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQMTALLEAVQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAPG-LADVPYPVVMEPNLVVEFYAK 205 >gi|15965540|ref|NP_385893.1| 30S ribosomal protein S4 [Sinorhizobium meliloti 1021] gi|307302660|ref|ZP_07582416.1| ribosomal protein S4 [Sinorhizobium meliloti BL225C] gi|307318507|ref|ZP_07597941.1| ribosomal protein S4 [Sinorhizobium meliloti AK83] gi|26399445|sp|Q92PG9|RS4_RHIME RecName: Full=30S ribosomal protein S4 gi|15074721|emb|CAC46366.1| Probable 30S ribosomal subunit protein S4 [Sinorhizobium meliloti 1021] gi|306895847|gb|EFN26599.1| ribosomal protein S4 [Sinorhizobium meliloti AK83] gi|306903024|gb|EFN33615.1| ribosomal protein S4 [Sinorhizobium meliloti BL225C] Length = 205 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 159/206 (77%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI EK+FR+IF EA R +GDT NL+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDIREKQFRAIFAEASRRKGDTPENLVGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEVK+KSKQL +VLEA QLAERDVP+YI +H+ MVATFV Sbjct: 121 VKVNGVRVNIGSYRCKPGDVIEVKEKSKQLVTVLEAVQLAERDVPDYIEADHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYPV+M+P+LVVEFYSR Sbjct: 181 RVPA-LSDVPYPVVMEPHLVVEFYSR 205 >gi|126725806|ref|ZP_01741648.1| 30S ribosomal protein S4 [Rhodobacterales bacterium HTCC2150] gi|126705010|gb|EBA04101.1| 30S ribosomal protein S4 [Rhodobacterales bacterium HTCC2150] Length = 206 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFSEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR K+GDVIEV+ +SKQ A+V+EASQLAERDVP+Y+ V+H MVATF Sbjct: 121 VKVNGKKVNIPSYRVKDGDVIEVRDRSKQNATVIEASQLAERDVPDYVDVDHSKMVATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P S DVPYPVIM+PNLVVEFY++ Sbjct: 181 RTP-SFSDVPYPVIMEPNLVVEFYAK 205 >gi|89070850|ref|ZP_01158095.1| 30S ribosomal protein S4 [Oceanicola granulosus HTCC2516] gi|89043588|gb|EAR49797.1| 30S ribosomal protein S4 [Oceanicola granulosus HTCC2516] Length = 206 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 172/204 (84%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFSEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDV+ V++KS+Q+AS+LEA+QL ERDVP+Y+ V+H + AT+V Sbjct: 121 VTVNGKRVNIPSYRVKEGDVVAVREKSRQMASILEATQLPERDVPDYLDVDHSKLTATYV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPVIM+PNLV+E+Y Sbjct: 181 RAPG-LADVPYPVIMEPNLVIEYY 203 >gi|84686195|ref|ZP_01014090.1| 30S ribosomal protein S4 [Maritimibacter alkaliphilus HTCC2654] gi|84665722|gb|EAQ12197.1| 30S ribosomal protein S4 [Rhodobacterales bacterium HTCC2654] Length = 206 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 151/204 (74%), Positives = 173/204 (84%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDMTEKQFRRIFAEAERLKGDTGENLIGLLERRLDAVVYRAKFVPTIFAARQFVNHAH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V+VNG+ VNI SYR KEGDVIEV++KSKQLA VLEASQL ERDVP+Y+ V+H M ATFV Sbjct: 121 VMVNGQRVNIPSYRVKEGDVIEVREKSKQLAIVLEASQLPERDVPDYLEVDHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+EFY Sbjct: 181 RTPG-LSDVPYPVMMEPNLVIEFY 203 >gi|163737823|ref|ZP_02145240.1| RNA-binding S4 [Phaeobacter gallaeciensis BS107] gi|163742871|ref|ZP_02150255.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis 2.10] gi|161383835|gb|EDQ08220.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis 2.10] gi|161389349|gb|EDQ13701.1| RNA-binding S4 [Phaeobacter gallaeciensis BS107] Length = 206 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 145/206 (70%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYSEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+ ++LEA QLAERDVP+Y+ +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQMTALLEAVQLAERDVPDYVEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAPG-LSDVPYPVVMEPNLVVEFYAK 205 >gi|254718936|ref|ZP_05180747.1| 30S ribosomal protein S4 [Brucella sp. 83/13] gi|265983924|ref|ZP_06096659.1| SSU ribosomal protein S4P [Brucella sp. 83/13] gi|306838833|ref|ZP_07471664.1| ribosomal protein S4 [Brucella sp. NF 2653] gi|264662516|gb|EEZ32777.1| SSU ribosomal protein S4P [Brucella sp. 83/13] gi|306406117|gb|EFM62365.1| ribosomal protein S4 [Brucella sp. NF 2653] Length = 205 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIEVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|222086151|ref|YP_002544683.1| ribosomal protein S4 [Agrobacterium radiobacter K84] gi|254764561|sp|B9JFR5|RS4_AGRRK RecName: Full=30S ribosomal protein S4 gi|221723599|gb|ACM26755.1| ribosomal protein S4 [Agrobacterium radiobacter K84] Length = 205 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 154/206 (74%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR+ F EA+R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLREKQFRATFDEANRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV++KSKQL VLE+ LAERDVP+YI V+H+ MVATF Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVREKSKQLVIVLESVSLAERDVPDYIEVDHNKMVATFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V+M+P LVVEFYSR Sbjct: 181 RVP-TLADVPYAVVMEPQLVVEFYSR 205 >gi|17987416|ref|NP_540050.1| 30S ribosomal protein S4 [Brucella melitensis bv. 1 str. 16M] gi|148560413|ref|YP_001258806.1| 30S ribosomal protein S4 [Brucella ovis ATCC 25840] gi|161618794|ref|YP_001592681.1| 30S ribosomal protein S4 [Brucella canis ATCC 23365] gi|163843102|ref|YP_001627506.1| 30S ribosomal protein S4 [Brucella suis ATCC 23445] gi|225627323|ref|ZP_03785360.1| ribosomal protein S4 [Brucella ceti str. Cudo] gi|225852343|ref|YP_002732576.1| 30S ribosomal protein S4 [Brucella melitensis ATCC 23457] gi|254693567|ref|ZP_05155395.1| 30S ribosomal protein S4 [Brucella abortus bv. 3 str. Tulya] gi|254701596|ref|ZP_05163424.1| 30S ribosomal protein S4 [Brucella suis bv. 5 str. 513] gi|254704143|ref|ZP_05165971.1| 30S ribosomal protein S4 [Brucella suis bv. 3 str. 686] gi|254708561|ref|ZP_05170389.1| 30S ribosomal protein S4 [Brucella pinnipedialis M163/99/10] gi|254709936|ref|ZP_05171747.1| 30S ribosomal protein S4 [Brucella pinnipedialis B2/94] gi|254713936|ref|ZP_05175747.1| 30S ribosomal protein S4 [Brucella ceti M644/93/1] gi|254717006|ref|ZP_05178817.1| 30S ribosomal protein S4 [Brucella ceti M13/05/1] gi|256031429|ref|ZP_05445043.1| 30S ribosomal protein S4 [Brucella pinnipedialis M292/94/1] gi|256159551|ref|ZP_05457318.1| 30S ribosomal protein S4 [Brucella ceti M490/95/1] gi|256254837|ref|ZP_05460373.1| 30S ribosomal protein S4 [Brucella ceti B1/94] gi|256264157|ref|ZP_05466689.1| 30S ribosomal protein S4 [Brucella melitensis bv. 2 str. 63/9] gi|260168563|ref|ZP_05755374.1| 30S ribosomal protein S4 [Brucella sp. F5/99] gi|260563860|ref|ZP_05834346.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. 16M] gi|260566609|ref|ZP_05837079.1| SSU ribosomal protein S4P [Brucella suis bv. 4 str. 40] gi|261213831|ref|ZP_05928112.1| SSU ribosomal protein S4P [Brucella abortus bv. 3 str. Tulya] gi|261218812|ref|ZP_05933093.1| SSU ribosomal protein S4P [Brucella ceti M13/05/1] gi|261222017|ref|ZP_05936298.1| SSU ribosomal protein S4P [Brucella ceti B1/94] gi|261316061|ref|ZP_05955258.1| SSU ribosomal protein S4P [Brucella pinnipedialis M163/99/10] gi|261317482|ref|ZP_05956679.1| SSU ribosomal protein S4P [Brucella pinnipedialis B2/94] gi|261321689|ref|ZP_05960886.1| SSU ribosomal protein S4P [Brucella ceti M644/93/1] gi|261752148|ref|ZP_05995857.1| SSU ribosomal protein S4P [Brucella suis bv. 5 str. 513] gi|261754809|ref|ZP_05998518.1| SSU ribosomal protein S4P [Brucella suis bv. 3 str. 686] gi|261758035|ref|ZP_06001744.1| SSU ribosomal protein S4P [Brucella sp. F5/99] gi|265988517|ref|ZP_06101074.1| SSU ribosomal protein S4P [Brucella pinnipedialis M292/94/1] gi|265997981|ref|ZP_06110538.1| SSU ribosomal protein S4P [Brucella ceti M490/95/1] gi|306841935|ref|ZP_07474613.1| ribosomal protein S4 [Brucella sp. BO2] gi|306843765|ref|ZP_07476364.1| ribosomal protein S4 [Brucella sp. BO1] gi|26399431|sp|Q8YGM5|RS4_BRUME RecName: Full=30S ribosomal protein S4 gi|172048262|sp|A5VQ09|RS4_BRUO2 RecName: Full=30S ribosomal protein S4 gi|189045365|sp|A9MAK7|RS4_BRUC2 RecName: Full=30S ribosomal protein S4 gi|189045366|sp|B0CLF6|RS4_BRUSI RecName: Full=30S ribosomal protein S4 gi|254764573|sp|C0RIG4|RS4_BRUMB RecName: Full=30S ribosomal protein S4 gi|17983107|gb|AAL52314.1| ssu ribosomal protein s4p [Brucella melitensis bv. 1 str. 16M] gi|148371670|gb|ABQ61649.1| ribosomal protein S4 [Brucella ovis ATCC 25840] gi|161335605|gb|ABX61910.1| ribosomal protein S4 [Brucella canis ATCC 23365] gi|163673825|gb|ABY37936.1| ribosomal protein S4 [Brucella suis ATCC 23445] gi|225617328|gb|EEH14373.1| ribosomal protein S4 [Brucella ceti str. Cudo] gi|225640708|gb|ACO00622.1| ribosomal protein S4 [Brucella melitensis ATCC 23457] gi|260153876|gb|EEW88968.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. 16M] gi|260156127|gb|EEW91207.1| SSU ribosomal protein S4P [Brucella suis bv. 4 str. 40] gi|260915438|gb|EEX82299.1| SSU ribosomal protein S4P [Brucella abortus bv. 3 str. Tulya] gi|260920601|gb|EEX87254.1| SSU ribosomal protein S4P [Brucella ceti B1/94] gi|260923901|gb|EEX90469.1| SSU ribosomal protein S4P [Brucella ceti M13/05/1] gi|261294379|gb|EEX97875.1| SSU ribosomal protein S4P [Brucella ceti M644/93/1] gi|261296705|gb|EEY00202.1| SSU ribosomal protein S4P [Brucella pinnipedialis B2/94] gi|261305087|gb|EEY08584.1| SSU ribosomal protein S4P [Brucella pinnipedialis M163/99/10] gi|261738019|gb|EEY26015.1| SSU ribosomal protein S4P [Brucella sp. F5/99] gi|261741901|gb|EEY29827.1| SSU ribosomal protein S4P [Brucella suis bv. 5 str. 513] gi|261744562|gb|EEY32488.1| SSU ribosomal protein S4P [Brucella suis bv. 3 str. 686] gi|262552449|gb|EEZ08439.1| SSU ribosomal protein S4P [Brucella ceti M490/95/1] gi|263094376|gb|EEZ18221.1| 30S ribosomal protein S4 [Brucella melitensis bv. 2 str. 63/9] gi|264660714|gb|EEZ30975.1| SSU ribosomal protein S4P [Brucella pinnipedialis M292/94/1] gi|306275956|gb|EFM57669.1| ribosomal protein S4 [Brucella sp. BO1] gi|306287968|gb|EFM59376.1| ribosomal protein S4 [Brucella sp. BO2] gi|326408851|gb|ADZ65916.1| 30S ribosomal protein S4 [Brucella melitensis M28] gi|326538567|gb|ADZ86782.1| ribosomal protein S4 [Brucella melitensis M5-90] Length = 205 Score = 294 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|150396726|ref|YP_001327193.1| 30S ribosomal protein S4 [Sinorhizobium medicae WSM419] gi|171460831|sp|A6U9M8|RS4_SINMW RecName: Full=30S ribosomal protein S4 gi|150028241|gb|ABR60358.1| RNA-binding S4 domain protein [Sinorhizobium medicae WSM419] Length = 205 Score = 294 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 159/206 (77%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI EK+FR+IF EA R +GDT NL+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDIREKQFRAIFAEASRRKGDTPENLVGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEVK+ SKQL +VLEA QLAERDVP+YI +H+ MVATFV Sbjct: 121 VKVNGVRVNIGSYRCKPGDVIEVKESSKQLVTVLEAVQLAERDVPDYIEADHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYPVIM+P+LVVEFYSR Sbjct: 181 RVPA-LADVPYPVIMEPHLVVEFYSR 205 >gi|62289777|ref|YP_221570.1| 30S ribosomal protein S4 [Brucella abortus bv. 1 str. 9-941] gi|82699705|ref|YP_414279.1| 30S ribosomal protein S4 [Brucella melitensis biovar Abortus 2308] gi|189024020|ref|YP_001934788.1| Ribosomal protein S4 [Brucella abortus S19] gi|237815263|ref|ZP_04594261.1| ribosomal protein S4 [Brucella abortus str. 2308 A] gi|254689084|ref|ZP_05152338.1| 30S ribosomal protein S4 [Brucella abortus bv. 6 str. 870] gi|254697217|ref|ZP_05159045.1| 30S ribosomal protein S4 [Brucella abortus bv. 2 str. 86/8/59] gi|254730116|ref|ZP_05188694.1| 30S ribosomal protein S4 [Brucella abortus bv. 4 str. 292] gi|256257333|ref|ZP_05462869.1| 30S ribosomal protein S4 [Brucella abortus bv. 9 str. C68] gi|260545474|ref|ZP_05821215.1| ribosomal protein S4 [Brucella abortus NCTC 8038] gi|260754581|ref|ZP_05866929.1| SSU ribosomal protein S4P [Brucella abortus bv. 6 str. 870] gi|260757804|ref|ZP_05870152.1| SSU ribosomal protein S4P [Brucella abortus bv. 4 str. 292] gi|260761627|ref|ZP_05873970.1| SSU ribosomal protein S4P [Brucella abortus bv. 2 str. 86/8/59] gi|260883608|ref|ZP_05895222.1| 30S ribosomal protein S4 [Brucella abortus bv. 9 str. C68] gi|297248181|ref|ZP_06931899.1| 30S ribosomal protein S4 [Brucella abortus bv. 5 str. B3196] gi|75505300|sp|Q57DS5|RS4_BRUAB RecName: Full=30S ribosomal protein S4 gi|90101677|sp|Q2YNH2|RS4_BRUA2 RecName: Full=30S ribosomal protein S4 gi|226697812|sp|B2S567|RS4_BRUA1 RecName: Full=30S ribosomal protein S4 gi|62195909|gb|AAX74209.1| RpsD, ribosomal protein S4 [Brucella abortus bv. 1 str. 9-941] gi|82615806|emb|CAJ10807.1| Ribosomal protein S4:RNA-binding S4:Ribosomal protein S4, bacterial and organelle form [Brucella melitensis biovar Abortus 2308] gi|189019592|gb|ACD72314.1| Ribosomal protein S4 [Brucella abortus S19] gi|237790100|gb|EEP64310.1| ribosomal protein S4 [Brucella abortus str. 2308 A] gi|260096881|gb|EEW80756.1| ribosomal protein S4 [Brucella abortus NCTC 8038] gi|260668122|gb|EEX55062.1| SSU ribosomal protein S4P [Brucella abortus bv. 4 str. 292] gi|260672059|gb|EEX58880.1| SSU ribosomal protein S4P [Brucella abortus bv. 2 str. 86/8/59] gi|260674689|gb|EEX61510.1| SSU ribosomal protein S4P [Brucella abortus bv. 6 str. 870] gi|260873136|gb|EEX80205.1| 30S ribosomal protein S4 [Brucella abortus bv. 9 str. C68] gi|297175350|gb|EFH34697.1| 30S ribosomal protein S4 [Brucella abortus bv. 5 str. B3196] Length = 205 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKHKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|77462835|ref|YP_352339.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides 2.4.1] gi|126461727|ref|YP_001042841.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides ATCC 17029] gi|221638705|ref|YP_002524967.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides KD131] gi|90101713|sp|Q3J446|RS4_RHOS4 RecName: Full=30S ribosomal protein S4 gi|152112256|sp|A3PIA3|RS4_RHOS1 RecName: Full=30S ribosomal protein S4 gi|254764608|sp|B9KPH3|RS4_RHOSK RecName: Full=30S ribosomal protein S4 gi|77387253|gb|ABA78438.1| SSU ribosomal protein S4P [Rhodobacter sphaeroides 2.4.1] gi|126103391|gb|ABN76069.1| SSU ribosomal protein S4P [Rhodobacter sphaeroides ATCC 17029] gi|221159486|gb|ACM00466.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides KD131] Length = 206 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 150/206 (72%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT L+ LE RLD IVYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIFAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCKEGDVI+V++KS+QLA VLEA+QLAERDVP+YI V++ M ATFV Sbjct: 121 VTVNGQRVNIGSYRCKEGDVIQVREKSRQLALVLEATQLAERDVPDYIEVDYSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTPG-LGDVPYPVQMEPNLVVEFYAK 205 >gi|325293260|ref|YP_004279124.1| 30S ribosomal protein S4 [Agrobacterium sp. H13-3] gi|325061113|gb|ADY64804.1| 30S ribosomal protein S4 [Agrobacterium sp. H13-3] Length = 205 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 178/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG++ EK+FR+ + EA+R +GDTS NLI LESRLD IVYRAKFVPT+FA+RQF+NH H Sbjct: 61 YYGELREKQFRATYDEANRRKGDTSENLIGLLESRLDAIVYRAKFVPTVFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV+QKSKQL +VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VTVNGVRVNIGSYRCKPGDVIEVRQKSKQLVTVLEAVQLAERDVPDYIEVDHNKMVATYA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVPYPV+M+P+LVVEFYSR Sbjct: 181 RIPA-LSDVPYPVVMEPHLVVEFYSR 205 >gi|86136443|ref|ZP_01055022.1| ribosomal protein S4 [Roseobacter sp. MED193] gi|85827317|gb|EAQ47513.1| ribosomal protein S4 [Roseobacter sp. MED193] Length = 206 Score = 293 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 145/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDITEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVI V+ KSKQLA +LEA L ERDVP+YI +H M ATFV Sbjct: 121 VTVNGKRVNIASYRVKEGDVIAVRDKSKQLAVLLEAVALPERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLADVPYPVVMEPNLVVEFYAK 205 >gi|84500119|ref|ZP_00998385.1| 30S ribosomal protein S4 [Oceanicola batsensis HTCC2597] gi|84392053|gb|EAQ04321.1| 30S ribosomal protein S4 [Oceanicola batsensis HTCC2597] Length = 206 Score = 293 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 171/204 (83%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ I+ EA R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFKRIYSEAARVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KS+Q+A VLEA+QL ERDVP+Y+ +H M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSRQMALVLEAAQLPERDVPDYLDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+E+Y Sbjct: 181 RTPG-LSDVPYPVMMEPNLVIEYY 203 >gi|126739832|ref|ZP_01755523.1| 30S ribosomal protein S4 [Roseobacter sp. SK209-2-6] gi|126719064|gb|EBA15775.1| 30S ribosomal protein S4 [Roseobacter sp. SK209-2-6] Length = 206 Score = 293 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA R GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDMTEKQFRRIYAEAVRVNGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVI V+ KSKQLA ++EA+QLAERDVP+YI +H M ATFV Sbjct: 121 VTVNGKRVNIPSYRVKEGDVIAVRDKSKQLAVLIEATQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-GLGDVPYPVVMEPNLVVEFYAK 205 >gi|158423848|ref|YP_001525140.1| 30S ribosomal protein S4 [Azorhizobium caulinodans ORS 571] gi|189045363|sp|A8I889|RS4_AZOC5 RecName: Full=30S ribosomal protein S4 gi|158330737|dbj|BAF88222.1| ribosomal protein S4 [Azorhizobium caulinodans ORS 571] Length = 205 Score = 293 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 145/206 (70%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+KHKIDRR+GEN+WGR KSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRISAKHKIDRRMGENIWGRSKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I EK+F +++ EA R +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGSIGEKQFHAVYVEASRLKGDTGANLIGLLERRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GDVIEV++ SKQ+A VLEA QLAERDVP+Y+ V+H+ + A F Sbjct: 121 VKVNGRRVNIPSYQVKVGDVIEVREASKQMALVLEAVQLAERDVPDYLEVDHNRLTAKFN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLVVEFYSR Sbjct: 181 RIPE-LNEVPYPVQMEPNLVVEFYSR 205 >gi|294852185|ref|ZP_06792858.1| 30S ribosomal protein S4 [Brucella sp. NVSL 07-0026] gi|294820774|gb|EFG37773.1| 30S ribosomal protein S4 [Brucella sp. NVSL 07-0026] Length = 205 Score = 293 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYVVQMEPNLVVEFYSR 205 >gi|84514475|ref|ZP_01001839.1| 30S ribosomal protein S4 [Loktanella vestfoldensis SKA53] gi|84511526|gb|EAQ07979.1| 30S ribosomal protein S4 [Loktanella vestfoldensis SKA53] Length = 206 Score = 293 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+QKSKQL VL A+QLAERDVP+Y+ V+H+ M+ATFV Sbjct: 121 VTVNGQRVNIPSYRVKEGDVIEVRQKSKQLEIVLVAAQLAERDVPDYMEVDHNKMIATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-TLGDVPYPVTMEPNLVVEFYAK 205 >gi|23501717|ref|NP_697844.1| 30S ribosomal protein S4 [Brucella suis 1330] gi|26399355|sp|P59128|RS4_BRUSU RecName: Full=30S ribosomal protein S4 gi|23347642|gb|AAN29759.1| ribosomal protein S4 [Brucella suis 1330] Length = 205 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 152/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVPGLL-DVPYAVQMEPNLVVEFYSR 205 >gi|294678498|ref|YP_003579113.1| 30S ribosomal protein S4 [Rhodobacter capsulatus SB 1003] gi|294477318|gb|ADE86706.1| 30S ribosomal protein S4 [Rhodobacter capsulatus SB 1003] Length = 206 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 144/206 (69%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGR KSP+N R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRAKSPLNKRDYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD IVYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIYGEAERVKGDTGENLIGLLERRLDAIVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYR KEGDVI V+ +SKQLA VLEA+Q ERDVP+Y+ V+H M ATFV Sbjct: 121 VTVNGARVNIASYRVKEGDVIAVRDRSKQLAIVLEAAQSGERDVPDYLEVDHGKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTP-GLSDVPYPVHMEPNLVVEFYAK 205 >gi|256369260|ref|YP_003106768.1| 30S ribosomal protein S4 [Brucella microti CCM 4915] gi|255999420|gb|ACU47819.1| 30S ribosomal protein S4 [Brucella microti CCM 4915] Length = 205 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 151/206 (73%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MV T+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVTTYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVEFYSR 205 >gi|260429241|ref|ZP_05783218.1| ribosomal protein S4 [Citreicella sp. SE45] gi|260419864|gb|EEX13117.1| ribosomal protein S4 [Citreicella sp. SE45] Length = 206 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 148/204 (72%), Positives = 172/204 (84%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFGEAERIKGDTGELLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+A VLEA+QL ERDVP+Y+ V+H M ATFV Sbjct: 121 VLVNGQRVNIPSYRVKEGDVIEVREKSKQMALVLEAAQLPERDVPDYLEVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R+P L DVPYPV M+PNLV+EFY Sbjct: 181 RMPG-LADVPYPVQMEPNLVIEFY 203 >gi|256060939|ref|ZP_05451097.1| 30S ribosomal protein S4 [Brucella neotomae 5K33] gi|261324939|ref|ZP_05964136.1| 30S ribosomal protein S4 [Brucella neotomae 5K33] gi|261300919|gb|EEY04416.1| 30S ribosomal protein S4 [Brucella neotomae 5K33] Length = 205 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 151/206 (73%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAVVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V +PNLVVEFYSR Sbjct: 181 RVP-GLSDVPYAVQTEPNLVVEFYSR 205 >gi|255261708|ref|ZP_05341050.1| ribosomal protein S4 [Thalassiobium sp. R2A62] gi|255104043|gb|EET46717.1| ribosomal protein S4 [Thalassiobium sp. R2A62] Length = 206 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQLA VLEA QLAERDVP+Y+ +H M ATFV Sbjct: 121 VKVNGKKVNIPSYRVKEGDVIEVRDRSKQLAVVLEAVQLAERDVPDYVDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTPG-LGDVPYPVMMEPNLVVEFYAK 205 >gi|254486907|ref|ZP_05100112.1| ribosomal protein S4 [Roseobacter sp. GAI101] gi|214043776|gb|EEB84414.1| ribosomal protein S4 [Roseobacter sp. GAI101] Length = 206 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+A++LEA+QL ERDVP+Y+ V+H M ATFV Sbjct: 121 VKVNGKKVNIPSYRVKEGDVIEVRDRSKQMAALLEATQLPERDVPDYMEVDHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTPA-LGDVPYPVVMEPNLVVEFYAK 205 >gi|89053445|ref|YP_508896.1| 30S ribosomal protein S4 [Jannaschia sp. CCS1] gi|122499375|sp|Q28TU1|RS4_JANSC RecName: Full=30S ribosomal protein S4 gi|88862994|gb|ABD53871.1| SSU ribosomal protein S4P [Jannaschia sp. CCS1] Length = 206 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R RGDT LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERLRGDTGEFLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVI V+ KSKQLA VLEA LAERDVP+Y+ +H M ATFV Sbjct: 121 VTVNGQKVNIPSYRVKEGDVIAVRDKSKQLAVVLEAVGLAERDVPDYVDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-GLSDVPYPVVMEPNLVVEFYAK 205 >gi|254470314|ref|ZP_05083718.1| ribosomal protein S4 [Pseudovibrio sp. JE062] gi|211960625|gb|EEA95821.1| ribosomal protein S4 [Pseudovibrio sp. JE062] Length = 205 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 150/206 (72%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+KIDRR+GEN+WGRPKSP N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRQSAKYKIDRRMGENIWGRPKSPANRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKVYDEASRQRGDTSENLIGLLECRLDAIVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNIGSY CK GDVIEV++KSKQLA VLEA Q AERD P+YI V+ + +VAT+ Sbjct: 121 VNVNGRRVNIGSYMCKPGDVIEVREKSKQLAIVLEAVQSAERDTPDYIDVDTNKLVATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPYPV M+PNLVVEFYSR Sbjct: 181 RIPA-FGDVPYPVQMEPNLVVEFYSR 205 >gi|146278250|ref|YP_001168409.1| 30S ribosomal protein S4 [Rhodobacter sphaeroides ATCC 17025] gi|172046018|sp|A4WUP0|RS4_RHOS5 RecName: Full=30S ribosomal protein S4 gi|145556491|gb|ABP71104.1| SSU ribosomal protein S4P [Rhodobacter sphaeroides ATCC 17025] Length = 206 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 177/206 (85%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT L+ LE RLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIYAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSYRCKEGDVI+V+++S+QLA VLEA+QLAERDVP+YI V++ M ATFV Sbjct: 121 VTVNGQRVNIGSYRCKEGDVIQVRERSRQLAIVLEATQLAERDVPDYIEVDYSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P SL DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTP-SLGDVPYPVVMEPNLVVEFYAK 205 >gi|240850639|ref|YP_002972039.1| 30S ribosomal protein S4 [Bartonella grahamii as4aup] gi|240267762|gb|ACS51350.1| 30S ribosomal protein S4 [Bartonella grahamii as4aup] Length = 205 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+F ++EA R RGDT NLI LESRLD +VYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFHKTYEEAARRRGDTGENLIGLLESRLDAVVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVP+YI +H M ATF Sbjct: 121 VSVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPDYIEADHKQMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVQMEPNLVVEFYSR 205 >gi|15889161|ref|NP_354842.1| 30S ribosomal protein S4 [Agrobacterium tumefaciens str. C58] gi|26399422|sp|Q8UEA0|RS4_AGRT5 RecName: Full=30S ribosomal protein S4 gi|15156975|gb|AAK87627.1| 30S ribosomal protein S4 [Agrobacterium tumefaciens str. C58] Length = 205 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 155/206 (75%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG++ EK+FR+ F EA+R +GDTS NLIS LESRLD IVYRAKFVPT+FA+RQF+NH H Sbjct: 61 YYGELREKQFRATFDEANRRKGDTSENLISLLESRLDAIVYRAKFVPTVFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEV+QKSKQL +VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VTVNGVRVNIGSYRCKAGDVIEVRQKSKQLVTVLEAVQLAERDVPDYIEVDHNKMVATYA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P SL DVPYPV+M+P+LVVEFYSR Sbjct: 181 RVP-SLSDVPYPVVMEPHLVVEFYSR 205 >gi|163759587|ref|ZP_02166672.1| 30S ribosomal protein S4 [Hoeflea phototrophica DFL-43] gi|162283184|gb|EDQ33470.1| 30S ribosomal protein S4 [Hoeflea phototrophica DFL-43] Length = 205 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 154/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDISEK+FR I+ EA+R +GDT NLI LESRLD IVYRAKFV TIFAARQFVNH H Sbjct: 61 YYGDISEKQFRKIYDEANRMKGDTPENLIGLLESRLDAIVYRAKFVATIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NIGSYRCK GDVIEVK+KSKQL VLE+ LAERDVPEY+ +H+ MVAT+ Sbjct: 121 VKVNGVRTNIGSYRCKPGDVIEVKEKSKQLTLVLESVGLAERDVPEYVEADHNKMVATYT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYPV M+PNLVVEFYSR Sbjct: 181 RVPN-LSDVPYPVQMEPNLVVEFYSR 205 >gi|254451859|ref|ZP_05065296.1| ribosomal protein S4 [Octadecabacter antarcticus 238] gi|198266265|gb|EDY90535.1| ribosomal protein S4 [Octadecabacter antarcticus 238] Length = 206 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 142/204 (69%), Positives = 168/204 (82%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGMQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIFTEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGD+IEV+ SKQ +VL+A LAERDVP+Y+ V+H M ATFV Sbjct: 121 VTVNGKKVNIPSYRVKEGDIIEVRDSSKQNVAVLDAIGLAERDVPDYMDVDHSKMSATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+E+Y Sbjct: 181 RTP-GLGDVPYPVMMEPNLVIEYY 203 >gi|83854847|ref|ZP_00948377.1| 30S ribosomal protein S4 [Sulfitobacter sp. NAS-14.1] gi|83941370|ref|ZP_00953832.1| 30S ribosomal protein S4 [Sulfitobacter sp. EE-36] gi|83842690|gb|EAP81857.1| 30S ribosomal protein S4 [Sulfitobacter sp. NAS-14.1] gi|83847190|gb|EAP85065.1| 30S ribosomal protein S4 [Sulfitobacter sp. EE-36] Length = 206 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 144/206 (69%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+ ++LEA+QLAERDVP+YI +H M ATFV Sbjct: 121 VKVNGKKVNIPSYRVKEGDVIEVRDRSKQMVALLEATQLAERDVPDYIEADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTPA-LGDVPYPVMMEPNLVVEFYAK 205 >gi|163745685|ref|ZP_02153045.1| 30S ribosomal protein S4 [Oceanibulbus indolifex HEL-45] gi|161382503|gb|EDQ06912.1| 30S ribosomal protein S4 [Oceanibulbus indolifex HEL-45] Length = 206 Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 144/206 (69%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHK+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQLASVLEA QL ERDVP+Y+ +H + ATFV Sbjct: 121 VRVNGKKVNIPSYRVKEGDVIEVRDRSKQLASVLEAVQLPERDVPDYLETDHSKLTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTPG-LSDVPYPVVMEPNLVVEFYAK 205 >gi|319404221|emb|CBI77814.1| 30S ribosomal protein S4 [Bartonella rochalimae ATCC BAA-1498] Length = 205 Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 150/206 (72%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD +VYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAVVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERD+PEYI V+H+ M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESIQLAERDIPEYIDVDHNKMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVHMEPNLVVEFYSR 205 >gi|227822183|ref|YP_002826154.1| 30S ribosomal protein S4 [Sinorhizobium fredii NGR234] gi|254764606|sp|C3MD82|RS4_RHISN RecName: Full=30S ribosomal protein S4 gi|227341183|gb|ACP25401.1| 30S ribosomal protein S4 [Sinorhizobium fredii NGR234] Length = 205 Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 160/206 (77%), Positives = 179/206 (86%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRESSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKSKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI EK+FR+IF EA R +GDT NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDIREKQFRAIFAEASRRKGDTPENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNIGSYRCK GDVIEVK+KSKQL SVLE+ QLAERDVP+YI +H+ MVATFV Sbjct: 121 VKVNGVRVNIGSYRCKAGDVIEVKEKSKQLVSVLESVQLAERDVPDYIEADHNKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYPV+M+P+LVVEFYSR Sbjct: 181 RVPA-LTDVPYPVVMEPHLVVEFYSR 205 >gi|126733337|ref|ZP_01749084.1| 30S ribosomal protein S4 [Roseobacter sp. CCS2] gi|126716203|gb|EBA13067.1| 30S ribosomal protein S4 [Roseobacter sp. CCS2] Length = 206 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+QKSKQL VL ASQL ERDVP+Y+ V+H+ M ATF Sbjct: 121 VTVNGKKVNIPSYRVKEGDVIEVRQKSKQLELVLVASQLPERDVPDYMDVDHNKMTATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTPG-LGDVPYPVTMEPNLVVEFYAK 205 >gi|319407231|emb|CBI80870.1| 30S ribosomal protein S4 [Bartonella sp. 1-1C] Length = 205 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 152/206 (73%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI V+H+ M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPEYIDVDHNKMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVHMEPNLVVEFYSR 205 >gi|254510000|ref|ZP_05122067.1| ribosomal protein S4 [Rhodobacteraceae bacterium KLH11] gi|221533711|gb|EEE36699.1| ribosomal protein S4 [Rhodobacteraceae bacterium KLH11] Length = 206 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA R GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAVRVNGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ KSKQLA VLEA LAERDVP+YI +H M ATFV Sbjct: 121 VKVNGKRVNIPSYRVKEGDVIEVRDKSKQLAVVLEAVALAERDVPDYIDADHSKMAATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RAP-GLGDVPYPVVMEPNLVVEFYAK 205 >gi|114766790|ref|ZP_01445724.1| 30S ribosomal protein S4 [Pelagibaca bermudensis HTCC2601] gi|114540984|gb|EAU44042.1| 30S ribosomal protein S4 [Roseovarius sp. HTCC2601] Length = 206 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 147/204 (72%), Positives = 171/204 (83%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGR KSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRAKSPVNRREYGPGQHGQRRKGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT +LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFGEAERLKGDTGEHLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQLA VLEA+QL ERDVP+Y+ V+H M A+FV Sbjct: 121 VLVNGKRVNIPSYRVKEGDVIEVREKSKQLAVVLEAAQLPERDVPDYLEVDHSKMTASFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV M+PNLV+EFY Sbjct: 181 RTPG-LADVPYPVQMEPNLVIEFY 203 >gi|49474224|ref|YP_032266.1| 30S ribosomal protein S4 [Bartonella quintana str. Toulouse] gi|61215536|sp|Q6FZU4|RS4_BARQU RecName: Full=30S ribosomal protein S4 gi|49239728|emb|CAF26110.1| 30s ribosomal protein s4 [Bartonella quintana str. Toulouse] Length = 205 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD ++YRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAVIYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI +H+ M ATFV Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPEYIEADHNQMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVQMEPNLVVEFYSR 205 >gi|110633623|ref|YP_673831.1| 30S ribosomal protein S4 [Mesorhizobium sp. BNC1] gi|123353737|sp|Q11IV9|RS4_MESSB RecName: Full=30S ribosomal protein S4 gi|110284607|gb|ABG62666.1| SSU ribosomal protein S4P [Chelativorans sp. BNC1] Length = 205 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 146/206 (70%), Positives = 173/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRQSAKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGQQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+SEK+FR I+ EA+R +G+T+ NLI LESRLD IV+RAKFVPT FAARQFVNH H Sbjct: 61 YYGDLSEKQFRRIYDEANRRKGETTENLIGLLESRLDAIVFRAKFVPTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYRCK GDVIEV++KSKQL VLE+ LAERDVP+YI V+H+ M A +V Sbjct: 121 VKVNGRRVNIPSYRCKPGDVIEVREKSKQLTVVLESVALAERDVPDYIEVDHNKMTAKYV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPY V M+PNLV+E+YSR Sbjct: 181 RMPA-LADVPYAVHMEPNLVIEYYSR 205 >gi|126728329|ref|ZP_01744145.1| 30S ribosomal protein S4 [Sagittula stellata E-37] gi|126711294|gb|EBA10344.1| 30S ribosomal protein S4 [Sagittula stellata E-37] Length = 206 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 143/204 (70%), Positives = 175/204 (85%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTTAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKQKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF +A+R++GDT LI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFSDAERAKGDTGELLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR KEGDVIEV++KSKQ+A++LEA+QL ERDVP+YI V+H+ + A+FV Sbjct: 121 VLVNGQRVNIPSYRVKEGDVIEVREKSKQMAAILEATQLPERDVPDYIEVDHNKLTASFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+E+Y Sbjct: 181 RTPG-LSDVPYPVMMEPNLVIEYY 203 >gi|163868316|ref|YP_001609525.1| 30S ribosomal protein S4 [Bartonella tribocorum CIP 105476] gi|189045364|sp|A9IU99|RS4_BART1 RecName: Full=30S ribosomal protein S4 gi|161017972|emb|CAK01530.1| 30S ribosomal protein S4 [Bartonella tribocorum CIP 105476] Length = 205 Score = 290 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+F + EA R RGDT NLI LESRLD +VYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFHKTYVEAARRRGDTGENLIGLLESRLDAVVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVP+YI +H M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESVQLAERDVPDYIEADHKQMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVQMEPNLVVEFYSR 205 >gi|153009724|ref|YP_001370939.1| 30S ribosomal protein S4 [Ochrobactrum anthropi ATCC 49188] gi|171704561|sp|A6X1K6|RS4_OCHA4 RecName: Full=30S ribosomal protein S4 gi|151561612|gb|ABS15110.1| RNA-binding S4 domain protein [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 290 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VN+ SYR K GDV+EV++KSKQL VLEA QLAERDVP+YI V+H+ +VAT+ Sbjct: 121 VNVNGRRVNVQSYRLKTGDVVEVREKSKQLVIVLEAVQLAERDVPDYIEVDHNKLVATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L DVPY V M+PNLVVEFYSR Sbjct: 181 RVP-TLTDVPYAVQMEPNLVVEFYSR 205 >gi|110680562|ref|YP_683569.1| 30S ribosomal protein S4 [Roseobacter denitrificans OCh 114] gi|122972607|sp|Q163G0|RS4_ROSDO RecName: Full=30S ribosomal protein S4 gi|109456678|gb|ABG32883.1| ribosomal protein S4 [Roseobacter denitrificans OCh 114] Length = 206 Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH+H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVATVFAARQFVNHKH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+ +++EA+QLAERDVP+YI +H M ATFV Sbjct: 121 VRVNGKIVNIPSYRVKEGDVIEVRDRSKQMVALIEATQLAERDVPDYIEADHSKMQATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTPA-LGDVPYPVMMEPNLVVEFYAK 205 >gi|319405659|emb|CBI79282.1| 30S ribosomal protein S4 [Bartonella sp. AR 15-3] Length = 205 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 175/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLEA QLAERDVPEYI+V+H+ M+ATF+ Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLEAVQLAERDVPEYINVDHNKMIATFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVHMEPNLVVEFYSR 205 >gi|254459623|ref|ZP_05073039.1| ribosomal protein S4 [Rhodobacterales bacterium HTCC2083] gi|206676212|gb|EDZ40699.1| ribosomal protein S4 [Rhodobacteraceae bacterium HTCC2083] Length = 206 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 172/204 (84%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKAKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ IFKEADR +GDT NLI LE RLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFKKIFKEADRVKGDTGENLIGLLERRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDV+EV+ +SKQ+A++LEA QL ERDVP+Y+ V+H + ATF Sbjct: 121 VRVNGKKVNIASYRVKEGDVVEVRDRSKQMAAILEAVQLPERDVPDYMDVDHSKLTATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+E+Y Sbjct: 181 RTPG-LSDVPYPVLMEPNLVIEYY 203 >gi|119387008|ref|YP_918063.1| 30S ribosomal protein S4 [Paracoccus denitrificans PD1222] gi|152112241|sp|A1BA23|RS4_PARDP RecName: Full=30S ribosomal protein S4 gi|119377603|gb|ABL72367.1| SSU ribosomal protein S4P [Paracoccus denitrificans PD1222] Length = 206 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+GEN+WGR KSP+N R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRTAAKYKIDRRMGENIWGRAKSPLNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD ++YRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVIYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDV+ ++++S+QLA VLE+ LAERDVP+Y+ V+H+ M ATFV Sbjct: 121 VEVNGKRVNIASYRVKEGDVVSIRERSRQLAIVLESVGLAERDVPDYLEVDHNKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ L DVPY V M+PNLVVEFY++ Sbjct: 181 RTPA-LGDVPYAVQMEPNLVVEFYAK 205 >gi|114704639|ref|ZP_01437547.1| 30S ribosomal protein S4 [Fulvimarina pelagi HTCC2506] gi|114539424|gb|EAU42544.1| 30S ribosomal protein S4 [Fulvimarina pelagi HTCC2506] Length = 205 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRRQYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FR +++EA R +GDTS NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDVREKQFRKVYEEAARRKGDTSENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG N+ SYRCK GDVIEV++KSKQL SVLE+ LAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGVRTNVQSYRCKPGDVIEVREKSKQLTSVLESVGLAERDVPDYIEVDHNKMVATYQ 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYPV M+PNLVVEFYSR Sbjct: 181 RVPA-LHDVPYPVQMEPNLVVEFYSR 205 >gi|159045488|ref|YP_001534282.1| 30S ribosomal protein S4 [Dinoroseobacter shibae DFL 12] gi|189045378|sp|A8LK98|RS4_DINSH RecName: Full=30S ribosomal protein S4 gi|157913248|gb|ABV94681.1| 30S ribosomal protein S4 [Dinoroseobacter shibae DFL 12] Length = 206 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 173/204 (84%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKQKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG VNI SYR KEGDVIEV++KS+Q+A++LEA+QL ERDVP+Y+ +H+ M ATFV Sbjct: 121 VLVNGERVNIPSYRVKEGDVIEVREKSRQMAALLEATQLPERDVPDYVDADHNKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+E+Y Sbjct: 181 RTPG-LADVPYPVMMEPNLVIEYY 203 >gi|256044506|ref|ZP_05447410.1| 30S ribosomal protein S4 [Brucella melitensis bv. 1 str. Rev.1] gi|265990930|ref|ZP_06103487.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. Rev.1] gi|263001714|gb|EEZ14289.1| SSU ribosomal protein S4P [Brucella melitensis bv. 1 str. Rev.1] Length = 205 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 151/206 (73%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPY V M+PNLVV+FYSR Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVKFYSR 205 >gi|319898918|ref|YP_004159011.1| 30S ribosomal protein S4 [Bartonella clarridgeiae 73] gi|319402882|emb|CBI76433.1| 30S ribosomal protein S4 [Bartonella clarridgeiae 73] Length = 205 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 154/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRESTKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDTS NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTSENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI V+H+ M ATF+ Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESIQLAERDVPEYIDVDHNKMKATFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FTDVPYAVHMEPNLVVEFYSR 205 >gi|90420933|ref|ZP_01228838.1| 30S ribosomal protein S4 [Aurantimonas manganoxydans SI85-9A1] gi|90334908|gb|EAS48680.1| 30S ribosomal protein S4 [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRASAKYKIDRRMGENIWGRPKSPVNRRQYGPGQHGQRRKGKVSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+SEK+FR I++EA R +GDTS NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 YYGDVSEKQFRKIYEEAARRKGDTSENLIGLLESRLDAVVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI SY CK GDVIEV+QKSKQL +LE+ QLAERDVPEYI V+H MVAT+ Sbjct: 121 VNVNGVRTNIQSYVCKPGDVIEVRQKSKQLTIILESVQLAERDVPEYIEVDHQKMVATYQ 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-GLHDVPYPVQMEPNLVVEFYSR 205 >gi|49475604|ref|YP_033645.1| 30S ribosomal protein S4 [Bartonella henselae str. Houston-1] gi|61215542|sp|Q6G5E2|RS4_BARHE RecName: Full=30S ribosomal protein S4 gi|49238411|emb|CAF27638.1| 30S ribosomal protein s4 [Bartonella henselae str. Houston-1] Length = 205 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRE++K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRETTKYKIDRRMGENIWGRPKSPVNRRDYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R RGDT NLI LESRLD ++YRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRRGDTGENLIGLLESRLDAVIYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIE+++KSKQL VLE+ QL ERDVPEYI +H+ M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEIREKSKQLVLVLESVQLVERDVPEYIEADHNQMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FADVPYAVQMEPNLVVEFYSR 205 >gi|319408557|emb|CBI82210.1| 30S ribosomal protein S4 [Bartonella schoenbuchensis R1] Length = 205 Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 172/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRESTKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR I++EA R RGDTS NLI LESRLD IVYRAKFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKIYEEAVRRRGDTSENLIGLLESRLDAIVYRAKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIEV++KSKQL VLE+ QLAERDVPEYI +H M ATF Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEVREKSKQLVLVLESIQLAERDVPEYIEADHSKMKATFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FSDVPYAVHMEPNLVVEFYSR 205 >gi|197104460|ref|YP_002129837.1| ribosomal protein S4 [Phenylobacterium zucineum HLK1] gi|226699100|sp|B4RHE8|RS4_PHEZH RecName: Full=30S ribosomal protein S4 gi|196477880|gb|ACG77408.1| ribosomal protein S4 [Phenylobacterium zucineum HLK1] Length = 205 Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 140/204 (68%), Positives = 170/204 (83%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN+R+YGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKLDRRMGENIWGRPKSPVNSRAYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F I+ EA R +G+TS NLI+ LESRLD +VYRAKFVPT FAARQFVNH H Sbjct: 61 YYGNITEKQFVRIYTEAARRKGNTSENLIALLESRLDAVVYRAKFVPTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR K GDV+ V+++S+ +A VLEA Q +ERD P+YI+++ M ATFV Sbjct: 121 VLVNGKRVNIPSYRVKPGDVVSVRERSRNMALVLEALQSSERDTPDYITLDAKGMSATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L +VPYPV M+PNLVVEFY Sbjct: 181 RAPE-LAEVPYPVKMEPNLVVEFY 203 >gi|307945603|ref|ZP_07660939.1| ribosomal protein S4 [Roseibium sp. TrichSKD4] gi|307771476|gb|EFO30701.1| ribosomal protein S4 [Roseibium sp. TrichSKD4] Length = 205 Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 141/206 (68%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGRPKSP N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKYKIDRRMGENIWGRPKSPANKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F ++ EA R +GDTS NLI LE RLD I+YRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFHKVYVEASRMKGDTSENLIGLLERRLDAIIYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SYR + GDVIEV++KSKQ+ VLEA Q AERDVP+Y+ +H M AT+ Sbjct: 121 IKVNGKRVNIPSYRVRPGDVIEVREKSKQMGLVLEAVQSAERDVPDYVDADHAKMTATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P S DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-SFADVPYPVQMEPNLVVEFYSR 205 >gi|149202433|ref|ZP_01879406.1| 30S ribosomal protein S4 [Roseovarius sp. TM1035] gi|149144531|gb|EDM32562.1| 30S ribosomal protein S4 [Roseovarius sp. TM1035] Length = 206 Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 169/204 (82%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK+K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKAKISDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYAEAERLKGDTGENLIGLLERRLDAVVYRAKFVVTMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+ +LEA QLAERDVP+YI +H M ATFV Sbjct: 121 VTVNGQRVNIPSYRVKEGDVIEVRDRSKQMTVLLEAVQLAERDVPDYIEADHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+EFY Sbjct: 181 RQPG-LSDVPYPVMMEPNLVIEFY 203 >gi|163732311|ref|ZP_02139757.1| 30S ribosomal protein S4 [Roseobacter litoralis Och 149] gi|161394609|gb|EDQ18932.1| 30S ribosomal protein S4 [Roseobacter litoralis Och 149] Length = 206 Score = 288 bits (738), Expect = 3e-76, Method: Composition-based stats. Identities = 144/206 (69%), Positives = 174/206 (84%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH+H Sbjct: 61 YYGDLTEKQFRRIYAEAERVKGDTGENLIGLLERRLDAVVYRAKFVSTVFAARQFVNHKH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+A+++EA+QLAERDVP+YI +H M A FV Sbjct: 121 VRVNGQIVNIPSYRVKEGDVIEVRDRSKQMAALIEATQLAERDVPDYIEADHSKMHAKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ L DVPYPV+M+PNLVVEFY++ Sbjct: 181 RTPA-LGDVPYPVMMEPNLVVEFYAK 205 >gi|118588602|ref|ZP_01546010.1| 30S ribosomal protein S4 [Stappia aggregata IAM 12614] gi|118438588|gb|EAV45221.1| 30S ribosomal protein S4 [Stappia aggregata IAM 12614] Length = 205 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 145/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGRPKSP N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKYKIDRRMGENIWGRPKSPANKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++ EA R +GDTS NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKVYAEASRMKGDTSENLIGLLERRLDAIVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ + GDVIEV++KSKQLA VLEA Q AERDVP+Y+ V+H+ M AT+ Sbjct: 121 VKVNGKRVNISSYQIRPGDVIEVREKSKQLALVLEAVQSAERDVPDYLDVDHNKMTATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P DVPYPV M+PNLVVEFYSR Sbjct: 181 RVP-GFSDVPYPVQMEPNLVVEFYSR 205 >gi|121602011|ref|YP_989114.1| 30S ribosomal protein S4 [Bartonella bacilliformis KC583] gi|152060935|sp|A1UT11|RS4_BARBK RecName: Full=30S ribosomal protein S4 gi|120614188|gb|ABM44789.1| ribosomal protein S4 [Bartonella bacilliformis KC583] Length = 205 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRRIGEN+WGRPKSPVN R YGPG HGQRRK K S +G+QL AKQK+K Sbjct: 1 MSKRESAKYKIDRRIGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLCAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR I++EA R RGDT NLI LESRLD IVYR+KFVPTIFA+RQF+NH H Sbjct: 61 FYGDISEKQFRKIYQEAVRRRGDTGENLIGLLESRLDAIVYRSKFVPTIFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR NI SYRCK GDVIE++++SKQL VLEA+QL ERDVP+YI +H M ATFV Sbjct: 121 VNVNGRRTNIQSYRCKPGDVIEIRERSKQLLLVLEATQLNERDVPDYIEADHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY V M+PNLVVEFYSR Sbjct: 181 RIPA-FSDVPYAVQMEPNLVVEFYSR 205 >gi|329113307|ref|ZP_08242088.1| 30S ribosomal protein S4 [Acetobacter pomorum DM001] gi|326697132|gb|EGE48792.1| 30S ribosomal protein S4 [Acetobacter pomorum DM001] Length = 236 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 32 MSKRLESKYKINRRLGVNLWGRAKSPVNRREYGPGQHGQRRKGKPSDFSVQLMAKQKLKG 91 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR ++EA R +GDTS NLI+ LE RLD +VYR KF T FA+RQF++H H Sbjct: 92 YYGNITEKQFRRYYQEAVRRKGDTSENLINLLERRLDAVVYRMKFAITPFASRQFISHGH 151 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ +NI SY K+GDVIEV++KSKQLA VL+A+Q AERDVPEY+ V+H M T++ Sbjct: 152 ILVNGKKMNIPSYLVKDGDVIEVREKSKQLAIVLDAAQSAERDVPEYMEVDHRQMKGTYL 211 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVE+YSR Sbjct: 212 RGP-QLSDVPYPVQMEPNLVVEYYSR 236 >gi|148256683|ref|YP_001241268.1| 30S ribosomal protein S4 [Bradyrhizobium sp. BTAi1] gi|172047313|sp|A5EMG8|RS4_BRASB RecName: Full=30S ribosomal protein S4 gi|146408856|gb|ABQ37362.1| SSU ribosomal protein S4P [Bradyrhizobium sp. BTAi1] Length = 205 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F I+ EA R +GDT NLI LE RLDT+V+RAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHGIYVEAGRLKGDTGENLIGILERRLDTVVFRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ SKQLA VLEA+QLAERDVP+YI +H M A F+ Sbjct: 121 IKVNGRKVNIASYQVKPGDVIEVKEASKQLAIVLEATQLAERDVPDYIEADHSKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPA-LSDVPFAVQMEPHLIVEFYSR 205 >gi|146339797|ref|YP_001204845.1| 30S ribosomal protein S4 [Bradyrhizobium sp. ORS278] gi|172046996|sp|A4YRT2|RS4_BRASO RecName: Full=30S ribosomal protein S4 gi|146192603|emb|CAL76608.1| 30S ribosomal subunit protein S4 [Bradyrhizobium sp. ORS278] Length = 205 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F I+ EA R +GDT NLI LE RLDT+V+RAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHGIYVEAGRLKGDTGENLIGILERRLDTVVFRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ SKQLA VLEA+QLAERDVP+YI +H M A F+ Sbjct: 121 IKVNGRKVNIASYQVKPGDVIEVKEASKQLAVVLEATQLAERDVPDYIEADHSKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPA-LSDVPFAVQMEPHLIVEFYSR 205 >gi|304391422|ref|ZP_07373364.1| ribosomal protein S4 [Ahrensia sp. R2A130] gi|303295651|gb|EFL90009.1| ribosomal protein S4 [Ahrensia sp. R2A130] Length = 205 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 140/206 (67%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR++SK+K+DRR+GEN+WGRPKSPVN R YGPG HGQ RK K S FG+QLRAKQK+K Sbjct: 1 MSKRQASKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQGRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR IF +A+ +GDT NLI LE RLDTI+YRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFRKIFDQANAQKGDTGENLIGLLERRLDTIIYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG NI SYRCK GDVIE+++KSKQLA VLE+ LAERDVPEY++ +H M + V Sbjct: 121 LLVNGVRTNIPSYRCKPGDVIEIREKSKQLAIVLESVGLAERDVPEYVTADHSKMTCSLV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ DVP+PV+M+PNL VEFYSR Sbjct: 181 TVPA-FGDVPFPVLMEPNLTVEFYSR 205 >gi|114327192|ref|YP_744349.1| 30S ribosomal protein S4 [Granulibacter bethesdensis CGDNIH1] gi|114315366|gb|ABI61426.1| SSU ribosomal protein S4P [Granulibacter bethesdensis CGDNIH1] Length = 231 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK KI+RR+G NLWGR KSP+N R Y PG HGQRRK KPS FG+QL AKQK+K Sbjct: 27 MTKRAESKFKINRRLGVNLWGRAKSPLNKRDYAPGQHGQRRKGKPSDFGIQLMAKQKLKG 86 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++EA R +GDTS NLI LE RLD ++YR KF T FAARQFVNH H Sbjct: 87 YYGNISEKQFRKYYEEAVRRKGDTSENLIELLERRLDAVIYRMKFALTPFAARQFVNHGH 146 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SY K GDV+EV++KSKQLA VL+A+Q ERDVPEY+ V+H M T+ Sbjct: 147 VLVNGKRVNIPSYLVKVGDVVEVREKSKQLAMVLDATQSGERDVPEYLHVDHRLMKGTYA 206 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+E+YSR Sbjct: 207 RYP-KLSDVPYPVQMEPNLVIEYYSR 231 >gi|254504798|ref|ZP_05116949.1| ribosomal protein S4 [Labrenzia alexandrii DFL-11] gi|222440869|gb|EEE47548.1| ribosomal protein S4 [Labrenzia alexandrii DFL-11] Length = 205 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 141/206 (68%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++ EA R +GDTS NLI LE RLD ++YRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKVYAEASRLKGDTSENLIGLLERRLDAVIYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ + GDV+EV+++SKQLA VLEA Q AERDVP+Y+ +H M AT+ Sbjct: 121 VKVNGKRVNIPSYQLRPGDVVEVRERSKQLAIVLEAVQSAERDVPDYVDADHAKMTATYS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ DVPYPV M+PNLVVEFYSR Sbjct: 181 RVPA-FSDVPYPVQMEPNLVVEFYSR 205 >gi|312112941|ref|YP_004010537.1| ribosomal protein S4 [Rhodomicrobium vannielii ATCC 17100] gi|311218070|gb|ADP69438.1| ribosomal protein S4 [Rhodomicrobium vannielii ATCC 17100] Length = 205 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 141/206 (68%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GENLWGRPKSP+N R YGPG HGQRR+ K S FG QL+AKQK+K Sbjct: 1 MTKRASAKHKIDRRLGENLWGRPKSPLNKREYGPGQHGQRRRGKTSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+E++FR I+ EA R RGDTS NLI LE RLD +VYRAKFV T FAARQF++H H Sbjct: 61 YYGNITERQFRLIYAEATRLRGDTSENLIGLLERRLDAVVYRAKFVATPFAARQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SYRC+ GDVIEV++K+K LA VLEA+Q AERDVP+Y+ V+H + A Sbjct: 121 ISVNGRRVNIPSYRCRAGDVIEVREKAKPLAFVLEATQSAERDVPDYLEVDHGKLTARLS 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVPYPV+M+PNLVVEFYSR Sbjct: 181 RIP-QLSDVPYPVVMEPNLVVEFYSR 205 >gi|85704146|ref|ZP_01035249.1| 30S ribosomal protein S4 [Roseovarius sp. 217] gi|85671466|gb|EAQ26324.1| 30S ribosomal protein S4 [Roseovarius sp. 217] Length = 206 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 146/204 (71%), Positives = 167/204 (81%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT LI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFAEAERIKGDTGETLIGLLERRLDAVVYRAKFVATMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYR KEGDVIEV+ +SKQ+A +LEA QLAERDVP+YI +H M ATFV Sbjct: 121 VTVNGNRVNIPSYRVKEGDVIEVRDRSKQIAVLLEAVQLAERDVPDYIDADHSKMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPVIM+PNLV+EFY Sbjct: 181 RQPG-LSDVPYPVIMEPNLVIEFY 203 >gi|58040211|ref|YP_192175.1| 30S ribosomal protein S4 [Gluconobacter oxydans 621H] gi|81672625|sp|Q5FQ27|RS4_GLUOX RecName: Full=30S ribosomal protein S4 gi|58002625|gb|AAW61519.1| SSU ribosomal protein S4P [Gluconobacter oxydans 621H] Length = 205 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 137/206 (66%), Positives = 157/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNRREYGPGQHGQRRKQKPSDFSIQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GDTS NLI LE RLD +VYR KF T FA+RQF++H H Sbjct: 61 YYGNISEKQFRKYYDEAVRRKGDTSENLIGLLERRLDAVVYRLKFAITPFASRQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY KEGDVIEV+ SKQLA VL+A Q ERD PEY+ V+H M TF+ Sbjct: 121 VTVNGKKVNIPSYLVKEGDVIEVRDSSKQLAIVLDAVQTGERDTPEYVEVDHRQMKGTFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFYSR Sbjct: 181 RTPV-LSDVPYPVQMEPNLVVEFYSR 205 >gi|298292130|ref|YP_003694069.1| ribosomal protein S4 [Starkeya novella DSM 506] gi|296928641|gb|ADH89450.1| ribosomal protein S4 [Starkeya novella DSM 506] Length = 205 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+KHK+DRR+GEN+WGRPKSP+N R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRVSAKHKLDRRMGENIWGRPKSPINKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY I EK+F +++ EA R +GDT NLI LE RLD ++YRAKFVPT+FAARQFV+H H Sbjct: 61 YYASIGEKQFYAVYVEASRLKGDTGANLIGLLERRLDAVIYRAKFVPTVFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ SKQL VLEA ERDVP+Y+ V+H M A F Sbjct: 121 IKVNGRRVNIPSYQVKVGDVIEVKEASKQLVLVLEAVASGERDVPDYLEVDHSKMTAKFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV+M+PNLVVE+YSR Sbjct: 181 RIPE-LNEVPYPVVMEPNLVVEYYSR 205 >gi|315500061|ref|YP_004088864.1| ribosomal protein s4 [Asticcacaulis excentricus CB 48] gi|315418073|gb|ADU14713.1| ribosomal protein S4 [Asticcacaulis excentricus CB 48] Length = 205 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 141/205 (68%), Positives = 172/205 (83%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DR +GENLWGRPKSPVN RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKLDRAMGENLWGRPKSPVNKRSYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F I++EADR +G+TS NLI+ LESRLD IVYR KFVPT++AARQFVNH H Sbjct: 61 YYGNITEKQFSKIYEEADRRKGNTSENLIALLESRLDAIVYRCKFVPTVWAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYR K GDVIEV+++S+ +A VLEA Q ERDVP+YI ++ M AT++ Sbjct: 121 VLVNGKKVNIASYRVKVGDVIEVRERSRNMALVLEALQSPERDVPDYIELDAKAMKATYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L +VPYPV M+PNL+VE+YS Sbjct: 181 RLPE-LSEVPYPVKMEPNLIVEYYS 204 >gi|149913680|ref|ZP_01902213.1| 30S ribosomal protein S4 [Roseobacter sp. AzwK-3b] gi|149812800|gb|EDM72629.1| 30S ribosomal protein S4 [Roseobacter sp. AzwK-3b] Length = 206 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 148/204 (72%), Positives = 172/204 (84%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKISDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF++A+R RGDT L+ LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFRDAERQRGDTGELLVGLLERRLDAVVYRAKFVPTMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR +EGDVIEV+ +SKQLA +LEA QLAERDVP+Y+ V+H MVATFV Sbjct: 121 VRVNGRKVNIPSYRVQEGDVIEVRNRSKQLAVLLEAVQLAERDVPDYLEVDHSKMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPVIM+PNLV+EFY Sbjct: 181 RTPG-LADVPYPVIMEPNLVIEFY 203 >gi|328543189|ref|YP_004303298.1| 30S ribosomal protein S4 [Polymorphum gilvum SL003B-26A1] gi|326412935|gb|ADZ69998.1| 30S ribosomal protein S4 [Polymorphum gilvum SL003B-26A1] Length = 205 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 146/206 (70%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S KHKIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSVKHKIDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F+ ++ EA R +GDTS NLI LE RLD IVYRAKFVPT+FAARQFV+H H Sbjct: 61 YYGNISEKQFQKVYTEASRMKGDTSENLIGLLERRLDAIVYRAKFVPTVFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V IGSYRC+ GDVIEV+++SKQ+ VLEA+Q ERDVP+YI +H M ATF Sbjct: 121 VKVNGKRVTIGSYRCRPGDVIEVRERSKQMVLVLEAAQSGERDVPDYIDADHGKMTATFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP S +VPYPV M+PNLVVEFYSR Sbjct: 181 RIP-SFSEVPYPVQMEPNLVVEFYSR 205 >gi|16126750|ref|NP_421314.1| 30S ribosomal protein S4 [Caulobacter crescentus CB15] gi|221235532|ref|YP_002517969.1| 30S ribosomal protein S4 [Caulobacter crescentus NA1000] gi|26399478|sp|Q9A5D9|RS4_CAUCR RecName: Full=30S ribosomal protein S4 gi|254764577|sp|B8H053|RS4_CAUCN RecName: Full=30S ribosomal protein S4 gi|13424068|gb|AAK24482.1| ribosomal protein S4 [Caulobacter crescentus CB15] gi|220964705|gb|ACL96061.1| SSU ribosomal protein S4P [Caulobacter crescentus NA1000] Length = 205 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 143/204 (70%), Positives = 170/204 (83%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GENLWGRPKSPVN+RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKIDRRMGENLWGRPKSPVNSRSYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++EK+F ++EA R +G+TS NLI+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNLTEKQFSRTYEEAARRKGNTSENLIALLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYRCK GDVI+V++KS+ +A VLEA ERD EY+SV+ ++ ATFV Sbjct: 121 VTVNGKRVNIPSYRCKAGDVIQVREKSRNMALVLEAVASNERDFAEYVSVDAKSLSATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L +VPYPV M+PNLVVEFY Sbjct: 181 RAPE-LSEVPYPVKMEPNLVVEFY 203 >gi|212638314|ref|YP_002314834.1| 30S ribosomal protein S4 [Anoxybacillus flavithermus WK1] gi|212559794|gb|ACJ32849.1| Ribosomal protein S4 [Anoxybacillus flavithermus WK1] Length = 219 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +G+QL+ KQK++ Sbjct: 20 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRKKLSEYGMQLQEKQKLRH 78 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR F T ARQ VNH H Sbjct: 79 MYG-VNERQFRKTFEEAGKMAGKHGENFMILLESRLDNLVYRLGFARTRRQARQLVNHGH 137 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SYR K G I V++KS+ L + EA ++ VP+Y++++ D + T+ Sbjct: 138 ILVDGSRVDIPSYRVKPGQTISVREKSRNLQIIKEALEV-NSFVPDYLTLDADKLEGTYT 196 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 197 RLPERSE---LPAEINEALIVEFYSR 219 >gi|152060950|sp|Q0BUS6|RS4_GRABC RecName: Full=30S ribosomal protein S4 Length = 205 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK KI+RR+G NLWGR KSP+N R Y PG HGQRRK KPS FG+QL AKQK+K Sbjct: 1 MTKRAESKFKINRRLGVNLWGRAKSPLNKRDYAPGQHGQRRKGKPSDFGIQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR ++EA R +GDTS NLI LE RLD ++YR KF T FAARQFVNH H Sbjct: 61 YYGNISEKQFRKYYEEAVRRKGDTSENLIELLERRLDAVIYRMKFALTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SY K GDV+EV++KSKQLA VL+A+Q ERDVPEY+ V+H M T+ Sbjct: 121 VLVNGKRVNIPSYLVKVGDVVEVREKSKQLAMVLDATQSGERDVPEYLHVDHRLMKGTYA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+E+YSR Sbjct: 181 RYP-KLSDVPYPVQMEPNLVIEYYSR 205 >gi|258542135|ref|YP_003187568.1| 30S ribosomal protein S4 [Acetobacter pasteurianus IFO 3283-01] gi|256633213|dbj|BAH99188.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-01] gi|256636272|dbj|BAI02241.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-03] gi|256639325|dbj|BAI05287.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-07] gi|256642381|dbj|BAI08336.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-22] gi|256645436|dbj|BAI11384.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-26] gi|256648489|dbj|BAI14430.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-32] gi|256651542|dbj|BAI17476.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654533|dbj|BAI20460.1| SSU ribosomal protein S4P [Acetobacter pasteurianus IFO 3283-12] Length = 205 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 134/206 (65%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNRREYGPGQHGQRRKGKPSDFSVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR ++EA R +GDTS NLI+ LE RLD +VYR KF T FA+RQF++H H Sbjct: 61 YYGNITEKQFRRYYQEAVRRKGDTSENLINLLERRLDAVVYRMKFAITPFASRQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ +NI SY K+GDVIEV++KSKQLA VL+A+Q +ERDVPEY+ V+H M T++ Sbjct: 121 ILVNGKKMNIPSYLVKDGDVIEVREKSKQLAIVLDAAQSSERDVPEYMEVDHRQMKGTYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVE+YSR Sbjct: 181 RGP-QLSDVPYPVQMEPNLVVEYYSR 205 >gi|315122617|ref|YP_004063106.1| 30S ribosomal protein S4 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496019|gb|ADR52618.1| 30S ribosomal protein S4 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 206 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 180/206 (87%), Positives = 192/206 (93%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSKHKIDRRI ENLWGRPKSPVN RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK Sbjct: 1 MSKRESSKHKIDRRISENLWGRPKSPVNVRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FRSIFKEADR +GDTS NLISFLESRLDTIVYRAKFVPT+FAARQFVNHRH Sbjct: 61 YYGDVGEKQFRSIFKEADRCKGDTSQNLISFLESRLDTIVYRAKFVPTVFAARQFVNHRH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG SVNIGSYRCK GDVIEVK KSK+L SVL + QL ERDVPEYIS +H+NMVATFV Sbjct: 121 VLVNGFSVNIGSYRCKAGDVIEVKSKSKKLTSVLGSVQLPERDVPEYISADHENMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +IP+SL +VPYPVIM+PNLVVEFYSR Sbjct: 181 KIPTSLSEVPYPVIMEPNLVVEFYSR 206 >gi|295688620|ref|YP_003592313.1| 30S ribosomal protein S4 [Caulobacter segnis ATCC 21756] gi|295430523|gb|ADG09695.1| ribosomal protein S4 [Caulobacter segnis ATCC 21756] Length = 205 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 167/204 (81%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GENLWGRPKSPVN+RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKIDRRMGENLWGRPKSPVNSRSYGPGQHGQRRKSKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++EK+F ++EA R +G+TS NLI LESRLD IVYRAKFVPT FAARQFVNH H Sbjct: 61 YYGNLTEKQFSRTYEEAARRKGNTSENLIGLLESRLDAIVYRAKFVPTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ VNI SYRCK GDVI V++KS+ +A VLE+ ERD EY+SV +M ATFV Sbjct: 121 VLVNGKRVNIPSYRCKPGDVISVREKSRNMALVLESLASNERDFCEYVSVEAKSMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L +VPYPV M+PNLVVEFY Sbjct: 181 RAPE-LSEVPYPVKMEPNLVVEFY 203 >gi|167647476|ref|YP_001685139.1| 30S ribosomal protein S4 [Caulobacter sp. K31] gi|189045368|sp|B0T660|RS4_CAUSK RecName: Full=30S ribosomal protein S4 gi|167349906|gb|ABZ72641.1| RNA-binding S4 domain protein [Caulobacter sp. K31] Length = 205 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 138/204 (67%), Positives = 167/204 (81%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDRR+GENLWGRPKSPVN RSYGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRHSAKYKIDRRMGENLWGRPKSPVNQRSYGPGQHGQRRKQKVSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++EK+F ++EA R +G+T+ NL+ LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNLTEKQFSRTYEEAARRKGNTAENLVGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYRCK GDVI V++KS+ +A VLEA +ERD EYI+V+ + A+F+ Sbjct: 121 VTVNGKRVNIASYRCKIGDVIAVREKSRNMALVLEAVASSERDFCEYITVDAKGLEASFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R+P L +VPYPV M+PNLVVEFY Sbjct: 181 RVPE-LSEVPYPVKMEPNLVVEFY 203 >gi|27380817|ref|NP_772346.1| 30S ribosomal protein S4 [Bradyrhizobium japonicum USDA 110] gi|41017838|sp|Q89ID3|RS4_BRAJA RecName: Full=30S ribosomal protein S4 gi|27353982|dbj|BAC50971.1| 30S ribosomal protein S4 [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 284 bits (727), Expect = 5e-75, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F I+ EA R +GDT NLI LE RLD +VYRAKFV TIFAARQF+NH H Sbjct: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDAVVYRAKFVSTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDV+EVK+ SKQLA VLEASQL ERD P+Y+ V+H M A ++ Sbjct: 121 IKVNGRKVNISSYQLKVGDVVEVKEASKQLAHVLEASQLPERDTPDYLDVDHGKMTAKYI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+PV M+P+LVVEFYSR Sbjct: 181 RIPG-LSDVPFPVQMEPHLVVEFYSR 205 >gi|330993329|ref|ZP_08317264.1| 30S ribosomal protein S4 [Gluconacetobacter sp. SXCC-1] gi|329759359|gb|EGG75868.1| 30S ribosomal protein S4 [Gluconacetobacter sp. SXCC-1] Length = 205 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR + EA R +GDTS NLI LE RLD +VYR KF T FAARQF++H H Sbjct: 61 YYGNIGEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRLKFAITPFAARQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY ++GDVIEV++KSKQLA VL+A+Q ERDVPEY+ V+H M +F+ Sbjct: 121 ITVNGRKVNIPSYLVRDGDVIEVREKSKQLAIVLDAAQSGERDVPEYLEVDHRQMKGSFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 181 RSP-KLSDVPYPVQMEPNLVIEFYSR 205 >gi|83949926|ref|ZP_00958659.1| 30S ribosomal protein S4 [Roseovarius nubinhibens ISM] gi|83837825|gb|EAP77121.1| 30S ribosomal protein S4 [Roseovarius nubinhibens ISM] Length = 206 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 143/204 (70%), Positives = 169/204 (82%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+K+KIDRR+GEN+WGRPKSPVN R PG HG RRK+K S FGLQLRAKQK+K Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVNRRENAPGQHGARRKAKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF+EA+R +GDT NLI LE RLD +VYRAKFV T+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIFREAERVKGDTGENLIGLLERRLDAVVYRAKFVATMFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV+ +SKQ+A +LEA+QLAERDVP+YI +H M ATFV Sbjct: 121 VKVNGQRVNIPSYRVKEGDVIEVRDRSKQIAVLLEATQLAERDVPDYIDADHSKMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R P L DVPYPV+M+PNLV+EFY Sbjct: 181 RTPG-LSDVPYPVMMEPNLVIEFY 203 >gi|154248016|ref|YP_001418974.1| 30S ribosomal protein S4 [Xanthobacter autotrophicus Py2] gi|226701078|sp|A7IMS4|RS4_XANP2 RecName: Full=30S ribosomal protein S4 gi|154162101|gb|ABS69317.1| RNA-binding S4 domain protein [Xanthobacter autotrophicus Py2] Length = 205 Score = 283 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR ++KHKIDRR+GEN+WGR KSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRIAAKHKIDRRMGENIWGRSKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG I EK+F ++ EA R +GDT NLI LE RLD +VYRAKFVPTIFAARQFV+H H Sbjct: 61 YYGSIGEKQFHKVYVEASRLKGDTGANLIGLLERRLDAVVYRAKFVPTIFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDV+EVK+ S+Q+ VLEA QL ERDVP+YI ++ + A F Sbjct: 121 VKVNGQRVNIPSYLVKVGDVVEVKEASRQMTLVLEAQQLGERDVPDYIELDAGKLAARFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLVVEFYSR Sbjct: 181 RIPE-LNEVPYPVQMEPNLVVEFYSR 205 >gi|256113362|ref|ZP_05454220.1| 30S ribosomal protein S4 [Brucella melitensis bv. 3 str. Ether] gi|265994768|ref|ZP_06107325.1| SSU ribosomal protein S4P [Brucella melitensis bv. 3 str. Ether] gi|262765881|gb|EEZ11670.1| SSU ribosomal protein S4P [Brucella melitensis bv. 3 str. Ether] Length = 201 Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 148/202 (73%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRES+K+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGDISEK+FR ++EA R +GDT NLI LESRLD +VYRAKFVPTIFAARQF+NH H Sbjct: 61 FYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SYR K GDV+EV++KSKQLA VLEA QLAERDVP+YI V+H+ MVAT+ Sbjct: 121 VNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAERDVPDYIDVDHNKMVATYK 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVE 202 R+P L DVPY V M+PNLVVE Sbjct: 181 RVP-GLSDVPYAVQMEPNLVVE 201 >gi|295399544|ref|ZP_06809526.1| ribosomal protein S4 [Geobacillus thermoglucosidasius C56-YS93] gi|312109901|ref|YP_003988217.1| ribosomal protein S4 [Geobacillus sp. Y4.1MC1] gi|294979010|gb|EFG54606.1| ribosomal protein S4 [Geobacillus thermoglucosidasius C56-YS93] gi|311215002|gb|ADP73606.1| ribosomal protein S4 [Geobacillus sp. Y4.1MC1] Length = 200 Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR F T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGFARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA +L VP+Y++++ D + T+ Sbjct: 119 ILVDGNRVNIPSYRVKPGQTISVREKSRNLQVIKEALEL-NNFVPDYLTLDADKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + +L+VEFYSR Sbjct: 178 RLPERSE---LPAEINESLIVEFYSR 200 >gi|114569567|ref|YP_756247.1| 30S ribosomal protein S4 [Maricaulis maris MCS10] gi|122316382|sp|Q0AQX8|RS4_MARMM RecName: Full=30S ribosomal protein S4 gi|114340029|gb|ABI65309.1| SSU ribosomal protein S4P [Maricaulis maris MCS10] Length = 205 Score = 283 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 138/205 (67%), Positives = 164/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GENLWGRPKSPVN+RSYGPG HGQRRK+K S FGLQL AKQK+K Sbjct: 1 MSKRHSQKYKIDRRMGENLWGRPKSPVNSRSYGPGQHGQRRKTKMSDFGLQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R +G+T+ LI LESRLD IVYR KFVPT+FA+RQFVNH H Sbjct: 61 YYGNITEKQFRRTYDEASRRKGNTAELLIGLLESRLDAIVYRCKFVPTVFASRQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYRCK GDVIEV+++S+ +A VLEA ERD+PEYI ++ M ATFV Sbjct: 121 VKVNGIKVNIPSYRCKPGDVIEVRERSRSMALVLEALDSPERDLPEYIDLDAKAMKATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P +VPY V M+PNLV+EFYS Sbjct: 181 RMPE-FSEVPYAVQMEPNLVIEFYS 204 >gi|260576499|ref|ZP_05844489.1| ribosomal protein S4 [Rhodobacter sp. SW2] gi|259021382|gb|EEW24688.1| ribosomal protein S4 [Rhodobacter sp. SW2] Length = 206 Score = 283 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 139/206 (67%), Positives = 164/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+GEN+WGR KSP+N R YGPG HGQRRK+K S FG QLRAKQK+K Sbjct: 1 MTKRTSAKHKIDRRMGENIWGRAKSPLNKREYGPGQHGQRRKNKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR IF EA+R +GDT L+ LE RLD + YRAK V TIFAARQFVNH H Sbjct: 61 YYGDLTEKQFRKIFAEAERVKGDTGEMLVGLLERRLDAVCYRAKLVATIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SYR KEGD+IEV+QKSKQLA +LEASQL ERD+P+Y+ V+ + FV Sbjct: 121 VTVNGVRVNIASYRVKEGDIIEVRQKSKQLALILEASQLTERDIPDYLEVDQSKLTVKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFY++ Sbjct: 181 RTPG-LGDVPYPVQMEPNLVVEFYAK 205 >gi|114771201|ref|ZP_01448621.1| 30S ribosomal protein S4 [alpha proteobacterium HTCC2255] gi|114548126|gb|EAU51013.1| 30S ribosomal protein S4 [alpha proteobacterium HTCC2255] Length = 206 Score = 283 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 139/206 (67%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++KHK+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRTAAKHKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKQKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR I+ EA R GDT NL+ LE RLD +VYR+KFVPT+FAARQFVNH H Sbjct: 61 YYGDLTEKQFRRIYGEAVRVNGDTGENLVGLLERRLDAVVYRSKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR KEGDVIEV++KS+Q+A V+EA AERD EYI+V+ M A FV Sbjct: 121 VTVNGKKVNIPSYRVKEGDVIEVREKSRQMALVIEALASAERDFAEYINVDASKMKAEFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPVIM+PNLVVE+Y++ Sbjct: 181 RTPV-LADVPYPVIMEPNLVVEYYAK 205 >gi|83858775|ref|ZP_00952297.1| 30S ribosomal protein S4 [Oceanicaulis alexandrii HTCC2633] gi|83853598|gb|EAP91450.1| 30S ribosomal protein S4 [Oceanicaulis alexandrii HTCC2633] Length = 205 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 137/205 (66%), Positives = 162/205 (79%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S K+KIDRR+GEN+WGR KSPVN RSYGPG HGQRR K S FGLQLRAKQK+K Sbjct: 1 MSKRHSQKYKIDRRMGENIWGRAKSPVNKRSYGPGQHGQRRAGKLSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F+ I+ EA R +G+T+ NLI LESRLD IVYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNITEKQFKRIYTEAQRLKGNTAENLIGLLESRLDAIVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDV+EV++KS+ +A VLEA ERDVP+YI ++ M AT+ Sbjct: 121 VRVNGKRVNIASYMVKPGDVVEVREKSRSMALVLEALGSPERDVPDYIDLDPKAMKATYT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P +VPYPV M+PNLVVEFYS Sbjct: 181 RKPE-FNEVPYPVKMEPNLVVEFYS 204 >gi|239828057|ref|YP_002950681.1| 30S ribosomal protein S4 [Geobacillus sp. WCH70] gi|259495282|sp|C5D699|RS4_GEOSW RecName: Full=30S ribosomal protein S4 gi|239808350|gb|ACS25415.1| ribosomal protein S4 [Geobacillus sp. WCH70] Length = 200 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYPPGQHGPSQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR F T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGFARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA +L VP+Y++++ + + T+ Sbjct: 119 ILVDGNRVNIPSYRVKPGQTISVREKSRNLQVIKEALEL-NNFVPDYLTLDAEKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPSEINEALIVEFYSR 200 >gi|163793622|ref|ZP_02187597.1| Ribosomal protein S4 [alpha proteobacterium BAL199] gi|159181424|gb|EDP65939.1| Ribosomal protein S4 [alpha proteobacterium BAL199] Length = 204 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 134/206 (65%), Positives = 167/206 (81%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KRE +KHKIDRR+G NLWGRPKSP+N R YGPG HGQRR+ KPS +G+QL AKQK+K Sbjct: 1 MAKREQAKHKIDRRLGVNLWGRPKSPLNNREYGPGQHGQRRR-KPSDYGIQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR + EA R RGDT NL+ LESRLD ++YR KFVPT+FAARQFV+H H Sbjct: 60 YYGNIGEKQFRKYYAEAVRRRGDTGENLVGILESRLDAVIYRMKFVPTVFAARQFVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VN+ S+ K+GDVIEVK+KS++L VLEA Q +ERD+P+Y+ V+H M TF+ Sbjct: 120 VKVNGRRVNVPSFMVKDGDVIEVKEKSRELPMVLEAVQSSERDLPDYMEVDHSAMKGTFL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L+DVPYPV M+PNLV+E+YSR Sbjct: 180 RLP-KLEDVPYPVQMEPNLVIEYYSR 204 >gi|296115002|ref|ZP_06833646.1| 30S ribosomal protein S4 [Gluconacetobacter hansenii ATCC 23769] gi|295978464|gb|EFG85198.1| 30S ribosomal protein S4 [Gluconacetobacter hansenii ATCC 23769] Length = 205 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 134/206 (65%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSIQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR + EA R +GDTS NLI LE RLD +VYR KF T FAARQF++H H Sbjct: 61 YYGNIGEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRMKFAITPFAARQFISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY ++GDVIEV++KSKQLA VL+A+Q ER+VPEY+ V+H M TF Sbjct: 121 ITVNGRKVNIPSYLVRDGDVIEVREKSKQLAIVLDAAQSGEREVPEYMEVDHRQMKGTFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + L DVPYPV M+PNLV+EFYSR Sbjct: 181 RT-AKLSDVPYPVQMEPNLVIEFYSR 205 >gi|329851321|ref|ZP_08266078.1| ribosomal protein S4 [Asticcacaulis biprosthecum C19] gi|328840167|gb|EGF89739.1| ribosomal protein S4 [Asticcacaulis biprosthecum C19] Length = 205 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 130/205 (63%), Positives = 165/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DR +GENLWGRPKSPVN RSYGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRHSAKYKLDRVMGENLWGRPKSPVNKRSYGPGQHGQRRKQKISDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F ++EA R +G+TS NLI+ LE+RLD +VYRAKFVPT++AARQFVNH H Sbjct: 61 YYGNITEKQFLRTYEEASRRKGNTSENLIALLETRLDALVYRAKFVPTVWAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SYR K DV+EV+++S+ +A VLEA Q ERDVP+YI ++ A + Sbjct: 121 VTVNGQRVNIPSYRVKPDDVVEVRERSRSMALVLEALQSPERDVPDYIELDAKGQKARLI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L +VPYPV M+P+L+VE+YS Sbjct: 181 RLPE-LAEVPYPVKMEPHLIVEYYS 204 >gi|154253024|ref|YP_001413848.1| 30S ribosomal protein S4 [Parvibaculum lavamentivorans DS-1] gi|171769617|sp|A7HWA8|RS4_PARL1 RecName: Full=30S ribosomal protein S4 gi|154156974|gb|ABS64191.1| RNA-binding S4 domain protein [Parvibaculum lavamentivorans DS-1] Length = 206 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 146/206 (70%), Positives = 171/206 (83%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR+ SK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MTKRQESKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG+ISEK+FR I+KEA+R RGDTS LI LE RLD +VYRAKFV T FAARQFV H H Sbjct: 61 FYGNISEKQFRGIYKEANRLRGDTSEILIGLLERRLDAVVYRAKFVMTPFAARQFVGHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ VN+ SYR +EGDVIEV++KSKQLA VLEASQ AERD P+YI V+HD MVA FV Sbjct: 121 ILVNGKRVNVPSYRVREGDVIEVREKSKQLAIVLEASQSAERDTPDYIEVDHDKMVAKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ DVPY M+PNLV+EFYSR Sbjct: 181 RIPA-FSDVPYAAHMEPNLVIEFYSR 205 >gi|39934659|ref|NP_946935.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris CGA009] gi|192290175|ref|YP_001990780.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris TIE-1] gi|61215592|sp|Q6N9G0|RS4_RHOPA RecName: Full=30S ribosomal protein S4; AltName: Full=RRP-S4 gi|226699113|sp|B3Q7H1|RS4_RHOPT RecName: Full=30S ribosomal protein S4 gi|39648509|emb|CAE27030.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris CGA009] gi|192283924|gb|ACF00305.1| RNA-binding S4 domain protein [Rhodopseudomonas palustris TIE-1] Length = 205 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 137/206 (66%), Positives = 168/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLD +VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDAVVYRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GDVIEVK+ SKQLA VLEASQLAERDVP+YI V+H+ M A F Sbjct: 121 IKVNGKRVNIPSYKVRVGDVIEVKEASKQLAFVLEASQLAERDVPDYIEVDHNKMTAKFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPA-LSDVPFAVQMEPHLIVEFYSR 205 >gi|138896341|ref|YP_001126794.1| 30S ribosomal protein S4 [Geobacillus thermodenitrificans NG80-2] gi|196249964|ref|ZP_03148659.1| ribosomal protein S4 [Geobacillus sp. G11MC16] gi|172044188|sp|A4IRU5|RS4_GEOTN RecName: Full=30S ribosomal protein S4 gi|134267854|gb|ABO68049.1| Ribosomal protein S4 (BS4) [Geobacillus thermodenitrificans NG80-2] gi|196210478|gb|EDY05242.1| ribosomal protein S4 [Geobacillus sp. G11MC16] Length = 200 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFDEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA ++ VP+Y++ + + + T+ Sbjct: 119 ILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEAIEV-NNFVPDYLTFDPEKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|319651867|ref|ZP_08005992.1| 30S ribosomal protein S4 [Bacillus sp. 2_A_57_CT2] gi|317396519|gb|EFV77232.1| 30S ribosomal protein S4 [Bacillus sp. 2_A_57_CT2] Length = 200 Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRNLFDKAGKMPGKHGENFMILLESRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR G I +++KS+ L V EA ++ VP+++S + D + TF Sbjct: 119 IMVDGSRVDIPSYRVAPGQTITLREKSRSLDIVKEAIEV-NNFVPDFVSFDADKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + +L+VEFYSR Sbjct: 178 RMPERSE---LPAEINESLIVEFYSR 200 >gi|89100095|ref|ZP_01172964.1| 30S ribosomal protein S4 [Bacillus sp. NRRL B-14911] gi|89085185|gb|EAR64317.1| 30S ribosomal protein S4 [Bacillus sp. NRRL B-14911] Length = 200 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRRKISEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VTERQFRNLFDKAGKMAGKHGENFMVLLESRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR + G I +++KS+ L V EA ++ VP++++ + D + +F Sbjct: 119 IIVDGGRVDIPSYRVQPGQTITLREKSRGLDIVKEAIEV-NNFVPDFLTFDADKLEGSFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|205374494|ref|ZP_03227290.1| 30S ribosomal protein S4 [Bacillus coahuilensis m4-4] Length = 200 Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + +G N + LE RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRNLFDKAAKIQGKHGENFMVLLECRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG V+I S+R + G VI V++KS+ L + EA ++ VPEY++ + D + TF Sbjct: 119 VLVNGSRVDIPSFRVQPGQVIGVREKSRNLDIIKEAIEV-NNFVPEYLTFDADKLEGTFN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|209964302|ref|YP_002297217.1| 30S ribosomal protein S4 [Rhodospirillum centenum SW] gi|226699112|sp|B6ISG8|RS4_RHOCS RecName: Full=30S ribosomal protein S4 gi|209957768|gb|ACI98404.1| ribosomal protein S4 [Rhodospirillum centenum SW] Length = 204 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 128/206 (62%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+ +K+KIDRR+G NLWGR KSPVN R YGPG HGQRRK KPS +G+QL AKQK+K Sbjct: 1 MSKRQEAKYKIDRRLGVNLWGRAKSPVNKREYGPGQHGQRRK-KPSDYGMQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR +++EA R +GD+ NLI LE RLD +VYR KF T FA+RQ +NH H Sbjct: 60 YYGNIGEKQFRRLYQEAVRRKGDSGENLIQLLERRLDAVVYRMKFAATPFASRQLINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR VNI SY K+GD IEV+ K+KQ A V+EA+ ERD+P+Y+SV+ + T+V Sbjct: 120 ILVNGRRVNIPSYTVKDGDSIEVRSKAKQFAFVMEAAASGERDIPDYLSVDSQALKGTYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 180 RAPG-LADVPYPVQMEPNLVIEFYSR 204 >gi|148259677|ref|YP_001233804.1| 30S ribosomal protein S4 [Acidiphilium cryptum JF-5] gi|326403353|ref|YP_004283434.1| 30S ribosomal protein S4 [Acidiphilium multivorum AIU301] gi|172047761|sp|A5FWA3|RS4_ACICJ RecName: Full=30S ribosomal protein S4 gi|146401358|gb|ABQ29885.1| SSU ribosomal protein S4P [Acidiphilium cryptum JF-5] gi|325050214|dbj|BAJ80552.1| 30S ribosomal protein S4 [Acidiphilium multivorum AIU301] Length = 204 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 140/206 (67%), Positives = 164/206 (79%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK+KI+RR+G NLWGRPKSP+N R YGPG HGQRRK KPS FG+QL AKQK++ Sbjct: 1 MTKRTESKYKINRRLGVNLWGRPKSPINKREYGPGQHGQRRK-KPSDFGVQLMAKQKLRG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F ++EA R RGDTS NLI LE RLD +VYR KF T FAARQFV+H H Sbjct: 60 YYGNISEKQFYKYYEEAVRRRGDTSENLIELLERRLDAVVYRMKFAITPFAARQFVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNGR VNI SY+ ++GDV+EV++KSKQLA VL++ Q AERDVPEYI V+H M TF Sbjct: 120 VLVNGRRVNISSYQVRDGDVVEVREKSKQLAMVLDSVQSAERDVPEYIEVDHRAMKGTFA 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLVVEFYSR Sbjct: 180 RAP-KLADVPYPVQMEPNLVVEFYSR 204 >gi|316935241|ref|YP_004110223.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris DX-1] gi|315602955|gb|ADU45490.1| ribosomal protein S4 [Rhodopseudomonas palustris DX-1] Length = 205 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 136/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLD +VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDAVVYRAKFVATMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GDVIEVK+ SKQLA VLEASQL ERDVP+YI V+H+ M A F Sbjct: 121 IRVNGKRVNIPSYKLRVGDVIEVKEASKQLAFVLEASQLGERDVPDYIEVDHNKMTAKFA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPA-LSDVPFAVQMEPHLIVEFYSR 205 >gi|56421337|ref|YP_148655.1| 30S ribosomal protein S4 [Geobacillus kaustophilus HTA426] gi|61215360|sp|Q5KW49|RS4_GEOKA RecName: Full=30S ribosomal protein S4 gi|56381179|dbj|BAD77087.1| 30S ribosomal protein S4 [Geobacillus kaustophilus HTA426] Length = 200 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA + A +P+Y++ N + M T+ Sbjct: 119 ILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLTFNPEKMEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|26454648|sp|P81288|RS4_BACST RecName: Full=30S ribosomal protein S4; AltName: Full=BS5 Length = 200 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SYR K G I V++KS+ L + EA + A +P+Y+S + + M T+ Sbjct: 119 IIVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|323137934|ref|ZP_08073009.1| ribosomal protein S4 [Methylocystis sp. ATCC 49242] gi|322396937|gb|EFX99463.1| ribosomal protein S4 [Methylocystis sp. ATCC 49242] Length = 205 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 133/206 (64%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+K+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S +G QL+AKQK+K Sbjct: 1 MTKRAEAKYKLDRRLGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDYGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GD+ NLI LE RLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFRKYYAEAIRMKGDSGDNLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY K GDVIEVK+ SKQ +VLE+ LAERD PEY V+H M A Sbjct: 121 IRVNGRRVNIPSYLVKVGDVIEVKEASKQAVTVLESVALAERDTPEYYDVDHSKMTAKLT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + VPYPV M+PNLV+EFYSR Sbjct: 181 RVPHATE-VPYPVQMEPNLVIEFYSR 205 >gi|75675508|ref|YP_317929.1| 30S ribosomal protein S4 [Nitrobacter winogradskyi Nb-255] gi|90101700|sp|Q3ST14|RS4_NITWN RecName: Full=30S ribosomal protein S4 gi|74420378|gb|ABA04577.1| SSU ribosomal protein S4P [Nitrobacter winogradskyi Nb-255] Length = 205 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFVPTIFAARQF+NH H Sbjct: 61 YYGNISERQFYAIYVEATRMKGDSGENLIGLLERRLDTVVYRAKFVPTIFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GD +EVK SKQLA VLEA+QLAERDVP++I +H+ A F+ Sbjct: 121 VKVNGRRVNIPSYKLKVGDTVEVKDASKQLALVLEANQLAERDVPDFIDADHNKQSAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-QLADVPFAVQMEPHLIVEFYSR 205 >gi|261418186|ref|YP_003251868.1| 30S ribosomal protein S4 [Geobacillus sp. Y412MC61] gi|297529040|ref|YP_003670315.1| ribosomal protein S4 [Geobacillus sp. C56-T3] gi|319767854|ref|YP_004133355.1| ribosomal protein S4 [Geobacillus sp. Y412MC52] gi|261374643|gb|ACX77386.1| ribosomal protein S4 [Geobacillus sp. Y412MC61] gi|297252292|gb|ADI25738.1| ribosomal protein S4 [Geobacillus sp. C56-T3] gi|317112720|gb|ADU95212.1| ribosomal protein S4 [Geobacillus sp. Y412MC52] Length = 200 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPMWKVSRRLGISLSGTGKE-LQKRPYPPGQHGPGQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H Sbjct: 60 MYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SYR K G I V++KS+ L + EA + A +P+Y++ N + M T+ Sbjct: 119 ILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLTFNPEKMEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|299131719|ref|ZP_07024914.1| ribosomal protein S4 [Afipia sp. 1NLS2] gi|298591856|gb|EFI52056.1| ribosomal protein S4 [Afipia sp. 1NLS2] Length = 205 Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 134/206 (65%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +++ EA R +GD+ NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYANISERQFYAVYVEATRLKGDSGENLIGLLERRLDAIVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ K GDVIEVK SKQLA+VLEA+QLAERDVP++I V+H A F Sbjct: 121 IKVNGKRVNIPSYKVKVGDVIEVKDASKQLATVLEANQLAERDVPDFIEVDHGKQTAKFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L +VP+PV M+P+L++EFYSR Sbjct: 181 RVPN-LSEVPFPVQMEPHLIIEFYSR 205 >gi|162147980|ref|YP_001602441.1| 30S ribosomal protein S4 [Gluconacetobacter diazotrophicus PAl 5] gi|209542598|ref|YP_002274827.1| 30S ribosomal protein S4 [Gluconacetobacter diazotrophicus PAl 5] gi|189045383|sp|A9HL98|RS4_GLUDA RecName: Full=30S ribosomal protein S4 gi|161786557|emb|CAP56139.1| 30S ribosomal protein S4 [Gluconacetobacter diazotrophicus PAl 5] gi|209530275|gb|ACI50212.1| RNA-binding S4 domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 205 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SK+KI+RR+G NLWGR KSPVN R YGPG HGQRRK KPS F +QL AKQK+K Sbjct: 1 MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GDTS NLI LE RLD +VYR KF T FAARQFV+H H Sbjct: 61 YYGNISEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRLKFAMTPFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY ++ DVIEV++KSK LA VL+A+Q ERDVPEY+ V+H M F+ Sbjct: 121 ITVNGRKVNIPSYIVRDEDVIEVREKSKHLAIVLDAAQSGERDVPEYMEVDHRQMKGRFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 181 RAP-KLSDVPYPVQMEPNLVIEFYSR 205 >gi|149181086|ref|ZP_01859586.1| 30S ribosomal protein S4 [Bacillus sp. SG-1] gi|148851173|gb|EDL65323.1| 30S ribosomal protein S4 [Bacillus sp. SG-1] Length = 200 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKISEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + +G N ++ LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VTERQFRNLFDRAGKMQGKHGENFMALLESRLDNVVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G V+I SYR + G I V++KS+ L V EA ++ VP++++ + D + +F Sbjct: 119 VTVDGSRVDIPSYRLQAGQTIGVREKSRNLNIVKEALEV-NSFVPDFLTFDADKLEGSFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|209884598|ref|YP_002288455.1| ribosomal protein S4 [Oligotropha carboxidovorans OM5] gi|226699096|sp|B6JDU6|RS4_OLICO RecName: Full=30S ribosomal protein S4 gi|209872794|gb|ACI92590.1| ribosomal protein S4 [Oligotropha carboxidovorans OM5] Length = 205 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +++ EA R +GD+ NLI LE RLD IVYRAKFVPT+FAARQF+NH H Sbjct: 61 YYANISERQFYAVYVEATRLKGDSGENLIGLLERRLDAIVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ K GDVIEVK SKQLA VLEA+QLAERDVP+++ V+H A F Sbjct: 121 IKVNGKRVNIPSYKVKVGDVIEVKDASKQLALVLEANQLAERDVPDFLDVDHGKQTAKFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP SL +VP+PV M+P+L++EFYSR Sbjct: 181 RIP-SLSEVPFPVQMEPHLIIEFYSR 205 >gi|254292960|ref|YP_003058983.1| 30S ribosomal protein S4 [Hirschia baltica ATCC 49814] gi|254041491|gb|ACT58286.1| ribosomal protein S4 [Hirschia baltica ATCC 49814] Length = 205 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 128/205 (62%), Positives = 156/205 (76%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+R S+K+K+DRR+GEN+WGR KSP+N R PG HG RK K S FGLQL AKQK+K Sbjct: 1 MSRRSSAKYKLDRRVGENVWGRAKSPINKRQSRPGQHGAARKGKLSDFGLQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YGD++EK+FR + EA R +G+T+ NLI LESRLD +VYRAKFVPTIFAARQFVNH H Sbjct: 61 HYGDVTEKQFRRTYDEAARRKGNTAENLIGLLESRLDALVYRAKFVPTIFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG N+ SYR + GDV++VK KS+ +A VLEA AERD+P+YI V M ATFV Sbjct: 121 VTVNGVKANVPSYRLRPGDVVQVKDKSRSMALVLEALGSAERDIPDYIEVEPKAMTATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L DVPY M+PNLVVE+YS Sbjct: 181 RLPE-LADVPYACRMEPNLVVEYYS 204 >gi|188584461|ref|YP_001927906.1| 30S ribosomal protein S4 [Methylobacterium populi BJ001] gi|226699088|sp|B1ZAP8|RS4_METPB RecName: Full=30S ribosomal protein S4 gi|179347959|gb|ACB83371.1| RNA-binding S4 domain protein [Methylobacterium populi BJ001] Length = 205 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 139/206 (67%), Positives = 162/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRVQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R RGD+ NLI LE RLD +VYR+KFV T FAARQFVNH H Sbjct: 61 YYGNITEKQFRRYYAEAIRLRGDSGENLIGLLERRLDAVVYRSKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ S+QL V+ ASQLAERDVP+YI V+H M A Sbjct: 121 IKVNGRRVNIPSYQVKAGDVIEVKEASRQLEIVVVASQLAERDVPDYIEVDHQKMSARVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLV+EFYSR Sbjct: 181 RIPG-LSEVPYPVQMEPNLVIEFYSR 205 >gi|85715178|ref|ZP_01046162.1| Ribosomal protein S4 [Nitrobacter sp. Nb-311A] gi|85698093|gb|EAQ35966.1| Ribosomal protein S4 [Nitrobacter sp. Nb-311A] Length = 205 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 137/206 (66%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISERQFYAIYVEATRMKGDSGENLIGLLERRLDTVVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GD +EVK SKQLA VLEA+QLAERDVP++I +H+ A F+ Sbjct: 121 VKVNGRRVNIPSYKLKVGDTVEVKDASKQLALVLEANQLAERDVPDFIDADHNKQSAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIP-QLADVPFAVQMEPHLIVEFYSR 205 >gi|228999440|ref|ZP_04159019.1| 30S ribosomal protein S4 [Bacillus mycoides Rock3-17] gi|229006996|ref|ZP_04164624.1| 30S ribosomal protein S4 [Bacillus mycoides Rock1-4] gi|228754235|gb|EEM03652.1| 30S ribosomal protein S4 [Bacillus mycoides Rock1-4] gi|228760385|gb|EEM09352.1| 30S ribosomal protein S4 [Bacillus mycoides Rock3-17] Length = 200 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + ATF Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERAE---LAAEINEALIVEFYSR 200 >gi|163854133|ref|YP_001642176.1| 30S ribosomal protein S4 [Methylobacterium extorquens PA1] gi|218533078|ref|YP_002423894.1| 30S ribosomal protein S4 [Methylobacterium chloromethanicum CM4] gi|240141590|ref|YP_002966070.1| 30S ribosomal protein S4 [Methylobacterium extorquens AM1] gi|254564101|ref|YP_003071196.1| 30S ribosomal protein S4 [Methylobacterium extorquens DM4] gi|226699086|sp|A9W966|RS4_METEP RecName: Full=30S ribosomal protein S4 gi|254764596|sp|B7KVN1|RS4_METC4 RecName: Full=30S ribosomal protein S4 gi|163665738|gb|ABY33105.1| RNA-binding S4 domain protein [Methylobacterium extorquens PA1] gi|218525381|gb|ACK85966.1| RNA-binding S4 domain protein [Methylobacterium chloromethanicum CM4] gi|240011567|gb|ACS42793.1| 30S ribosomal protein S4 [Methylobacterium extorquens AM1] gi|254271379|emb|CAX27392.1| 30S ribosomal protein S4 [Methylobacterium extorquens DM4] Length = 205 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 139/206 (67%), Positives = 162/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRVQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R RGD+ NLI LE RLD +VYR+KFV T FAARQFVNH H Sbjct: 61 YYGNITEKQFRRYYAEAIRLRGDSGENLIGLLERRLDAVVYRSKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ K GDVIEVK+ S+QL V+ ASQLAERDVP+YI V+H M A Sbjct: 121 IKVNGRRVNIPSYQVKAGDVIEVKEASRQLEIVVVASQLAERDVPDYIEVDHHKMTARVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L +VPYPV M+PNLV+EFYSR Sbjct: 181 RIPG-LTEVPYPVQMEPNLVIEFYSR 205 >gi|152112255|sp|Q07R54|RS4_RHOP5 RecName: Full=30S ribosomal protein S4 Length = 205 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVATMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ K GD+IEVK+ SKQLA VLEASQL ERD P+Y+ V+H M A F+ Sbjct: 121 VKVNGKRVNISSYKVKVGDLIEVKESSKQLAFVLEASQLGERDTPDYVEVDHSKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVP+ V M+P+L+VEFYSR Sbjct: 181 RVPH-LSDVPFAVQMEPHLIVEFYSR 205 >gi|52081461|ref|YP_080252.1| 30S ribosomal protein S4 [Bacillus licheniformis ATCC 14580] gi|52786836|ref|YP_092665.1| 30S ribosomal protein S4 [Bacillus licheniformis ATCC 14580] gi|319647367|ref|ZP_08001589.1| 30S ribosomal protein S4 [Bacillus sp. BT1B_CT2] gi|81690928|sp|Q65G42|RS4_BACLD RecName: Full=30S ribosomal protein S4 gi|52004672|gb|AAU24614.1| ribosomal protein S4 [Bacillus licheniformis ATCC 14580] gi|52349338|gb|AAU41972.1| RpsD [Bacillus licheniformis ATCC 14580] gi|317390714|gb|EFV71519.1| 30S ribosomal protein S4 [Bacillus sp. BT1B_CT2] Length = 200 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LESRLD IVYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRNLFDKAAKMAGKHGENFMILLESRLDNIVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G V+I SY+ K G I +++KS+ L+ V EA ++ VPEY++ + + + + Sbjct: 119 VLVDGSRVDIPSYQVKPGQTISLREKSQNLSVVKEAVEV-NNFVPEYLTFDAEKLEGSLT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEINEALIVEFYSR 200 >gi|91976243|ref|YP_568902.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisB5] gi|123735552|sp|Q13A88|RS4_RHOPS RecName: Full=30S ribosomal protein S4 gi|91682699|gb|ABE39001.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisB5] Length = 205 Score = 276 bits (708), Expect = 9e-73, Method: Composition-based stats. Identities = 136/206 (66%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYR+KFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GDVIEVK+ SKQLA VLEA+QLAERDVP+YI V+H+ M A F Sbjct: 121 IKVNGKRVNISSYKVRVGDVIEVKEASKQLAIVLEANQLAERDVPDYIDVDHNKMTAKFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPA-LSDVPFAVQMEPHLIVEFYSR 205 >gi|228993388|ref|ZP_04153304.1| 30S ribosomal protein S4 [Bacillus pseudomycoides DSM 12442] gi|228766456|gb|EEM15099.1| 30S ribosomal protein S4 [Bacillus pseudomycoides DSM 12442] Length = 200 Score = 276 bits (708), Expect = 9e-73, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + ATF Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLAATFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERAE---LAAEINEALIVEFYSR 200 >gi|296532411|ref|ZP_06895138.1| 30S ribosomal protein S4 [Roseomonas cervicalis ATCC 49957] gi|296267254|gb|EFH13152.1| 30S ribosomal protein S4 [Roseomonas cervicalis ATCC 49957] Length = 205 Score = 276 bits (708), Expect = 9e-73, Method: Composition-based stats. Identities = 130/206 (63%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK+KI+RR+G NLWGR KSPV R YGPG HGQRRK KP+ FG+QL AKQK+K Sbjct: 1 MTKRAESKYKINRRLGVNLWGRAKSPVAKREYGPGQHGQRRKQKPTDFGVQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR ++EA R +GDTS NLI LE RLD +VYR K T FAARQFVNH H Sbjct: 61 YYGNIGEKQFRKYYEEAVRRKGDTSENLIELLERRLDAVVYRLKLAVTPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY ++ DVIEVK+KSKQL +VL+A+Q ER+VPEY+ ++H M F+ Sbjct: 121 ITVNGKRVNIPSYLVRDNDVIEVKEKSKQLVAVLDAAQSGEREVPEYLEIDHRQMKGRFL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 181 RAP-KLSDVPYPVQMEPNLVIEFYSR 205 >gi|254418524|ref|ZP_05032248.1| ribosomal protein S4 [Brevundimonas sp. BAL3] gi|196184701|gb|EDX79677.1| ribosomal protein S4 [Brevundimonas sp. BAL3] Length = 205 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 133/204 (65%), Positives = 164/204 (80%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDR +GENLWGR KSPVN RSYGPG HGQRRKSK S FGLQL+AKQK+K Sbjct: 1 MSKRHSAKYKIDRAMGENLWGRAKSPVNKRSYGPGQHGQRRKSKVSDFGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F + EA R +G+TS NLI LESRLD IVYRAKFVPT++AARQFV+H H Sbjct: 61 YYGNITEKQFAKTYDEAARRKGNTSENLIGLLESRLDAIVYRAKFVPTVWAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG+ V+I SYR K DV+ VK+KS+ +A V+EA Q +ERDVP+Y+ ++ + +V Sbjct: 121 VLVNGKKVDISSYRVKPEDVVTVKEKSRNMALVIEAQQSSERDVPDYLELSDRSFSVRYV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R+P L DVPYPV M+PNLVVE+Y Sbjct: 181 RVPE-LTDVPYPVKMEPNLVVEYY 203 >gi|229543523|ref|ZP_04432583.1| ribosomal protein S4 [Bacillus coagulans 36D1] gi|229327943|gb|EEN93618.1| ribosomal protein S4 [Bacillus coagulans 36D1] Length = 200 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + F +A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-LNERQFHNTFLKAGKMQGKHGENFMVLLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SYR + G I V++KS+ L + EA + VP+Y+S + D + T+ Sbjct: 119 ILVDGKRVDIPSYRVEPGQTIGVREKSRNLDVIKEAIETTTF-VPDYLSFDADKLEGTYS 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + +L+VEFYSR Sbjct: 178 RLPERSE---LPAEINESLIVEFYSR 200 >gi|86750809|ref|YP_487305.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris HaA2] gi|123407656|sp|Q2ITR6|RS4_RHOP2 RecName: Full=30S ribosomal protein S4 gi|86573837|gb|ABD08394.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris HaA2] Length = 205 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 169/206 (82%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F SI+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHSIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY+ + GD+IEVK+ SKQLA VLEASQLAERDVP+YI V+H+ M A F Sbjct: 121 IKVNGKRVNISSYKVRVGDLIEVKESSKQLAFVLEASQLAERDVPDYIEVDHNKMTAKFG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPA-LTDVPFAVQMEPHLIVEFYSR 205 >gi|294501546|ref|YP_003565246.1| ribosomal protein S4 [Bacillus megaterium QM B1551] gi|295706894|ref|YP_003599969.1| 30S ribosomal protein S4 [Bacillus megaterium DSM 319] gi|294351483|gb|ADE71812.1| ribosomal protein S4 [Bacillus megaterium QM B1551] gi|294804553|gb|ADF41619.1| 30S ribosomal protein S4 [Bacillus megaterium DSM 319] Length = 200 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGLSLSGTGKE-LEKRPYAPGPHGPGQRKKISEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VTERQFRNLFVAAGKLTGKHGENFMILLEARLDNLVYRMGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SYR + G VI V++KS+ L+ V EA ++ VP+Y++V+ + + TF Sbjct: 119 VLVDGKRVDIPSYRVQPGQVIGVREKSRNLSIVKEALEV-NNFVPDYLTVDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERSE---LSAEINEALIVEFYSR 200 >gi|313901705|ref|ZP_07835135.1| SSU ribosomal protein S4P [Thermaerobacter subterraneus DSM 13965] gi|313468023|gb|EFR63507.1| SSU ribosomal protein S4P [Thermaerobacter subterraneus DSM 13965] Length = 201 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KH + RR+G L G PK P R Y PG HG R+ K S +G +L KQK++ Sbjct: 1 MARYTGPKHAMCRRVGRPLCGSPKCPALKRPYPPGQHGPGRRQKLSEYGRRLLEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F+ A RS+G+T L+ LE+RLD +VYR F PTI+AARQ V H H Sbjct: 61 MYG-VLERQFRRYFERAQRSKGNTGERLLQLLETRLDNLVYRMGFAPTIWAARQLVVHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR V+ SY+ + GDVI V++KS+++ + E+ + A+R PEY+SV + T + Sbjct: 120 IQVNGRKVDRPSYQVRPGDVIAVREKSRRIPLIQESLENAQRA-PEYLSVEPERFQGTLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ + P+ ++ +L+VEFYSR Sbjct: 179 RVPARDE---IPIDIEESLIVEFYSR 201 >gi|90423114|ref|YP_531484.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisB18] gi|122476766|sp|Q218M1|RS4_RHOPB RecName: Full=30S ribosomal protein S4 gi|90105128|gb|ABD87165.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisB18] Length = 205 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 136/206 (66%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F SI+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 61 YYANISERQFHSIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVSTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ K GD++EVK+ SKQL VLEA+QLAERDVP++I V+H M A F+ Sbjct: 121 VKVNGKRVNIASYKVKVGDLVEVKESSKQLTFVLEANQLAERDVPDFIEVDHGKMTAKFI 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPH-LSDVPFAVQMEPHLIVEFYSR 205 >gi|170748158|ref|YP_001754418.1| 30S ribosomal protein S4 [Methylobacterium radiotolerans JCM 2831] gi|226699089|sp|B1M7L0|RS4_METRJ RecName: Full=30S ribosomal protein S4 gi|170654680|gb|ACB23735.1| RNA-binding S4 domain protein [Methylobacterium radiotolerans JCM 2831] Length = 205 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 136/206 (66%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRIQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR + EA R RGD+ NL+ LE RLD +VYRAKFV T FAARQFVNH H Sbjct: 61 YYGNITEKQFRRYYAEAIRLRGDSGENLVGLLERRLDAVVYRAKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG VNI SY+ K GD+IEVK+ S+QL V+ A+QL+ERDVP+YI +H M A Sbjct: 121 VKVNGVRVNIPSYQVKAGDLIEVKESSRQLEIVIVATQLSERDVPDYIEADHAKMTARVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP SL +VPYPV M+PNLV+EFYSR Sbjct: 181 RIP-SLSEVPYPVQMEPNLVIEFYSR 205 >gi|152977022|ref|YP_001376539.1| 30S ribosomal protein S4 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|171769250|sp|A7GTT6|RS4_BACCN RecName: Full=30S ribosomal protein S4 gi|152025774|gb|ABS23544.1| ribosomal protein S4 [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS+ LA + EA ++ VPEY++ + D + ATF Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSRNLAVIKEAMEV-NNFVPEYLTFDADKLEATFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RHAERAE---LPAEINEALIVEFYSR 200 >gi|329888167|ref|ZP_08266765.1| ribosomal protein S4 [Brevundimonas diminuta ATCC 11568] gi|328846723|gb|EGF96285.1| ribosomal protein S4 [Brevundimonas diminuta ATCC 11568] Length = 205 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 134/205 (65%), Positives = 165/205 (80%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DR +GENLWGR KSPVN RSYGPG HGQRRKSK S FGLQL+AKQK+K Sbjct: 1 MSKRHSAKYKLDRAMGENLWGRAKSPVNKRSYGPGQHGQRRKSKVSDFGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+F + + EA R +G+TS NLI LESRLD IVYRAKFVPT++AARQFV+H H Sbjct: 61 YYGNITEKQFAATYAEAARRKGNTSENLIGLLESRLDAIVYRAKFVPTVWAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+IGSYR K GDV+EVK+KS+ +A VLEA Q +ERD+P+Y+ + + Sbjct: 121 VTVNGKKVDIGSYRVKVGDVVEVKEKSRNMALVLEAQQSSERDLPDYLELGDRGFSVRYG 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P L DVPYPV M+PNLVVE+YS Sbjct: 181 RVPE-LSDVPYPVKMEPNLVVEYYS 204 >gi|115523649|ref|YP_780560.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisA53] gi|115517596|gb|ABJ05580.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisA53] Length = 222 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 18 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 77 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFV T+FAARQF+NH H Sbjct: 78 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVATMFAARQFINHGH 137 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY+ K GD+IEVK+ SKQLA VLEASQL ERD P+Y+ V+H M A F+ Sbjct: 138 VKVNGKRVNISSYKVKVGDLIEVKESSKQLAFVLEASQLGERDTPDYVEVDHSKMTAKFI 197 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L DVP+ V M+P+L+VEFYSR Sbjct: 198 RVPH-LSDVPFAVQMEPHLIVEFYSR 222 >gi|83311227|ref|YP_421491.1| 30S ribosomal protein S4 [Magnetospirillum magneticum AMB-1] gi|123542029|sp|Q2W5E3|RS4_MAGMM RecName: Full=30S ribosomal protein S4 gi|82946068|dbj|BAE50932.1| Ribosomal protein S4 and related protein [Magnetospirillum magneticum AMB-1] Length = 205 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 136/207 (65%), Positives = 157/207 (75%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT-RSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MSKR +K+KI+RR+G NLWGR KSP+N + PG HGQRRK KPS FG QL AKQK+K Sbjct: 1 MSKRIEAKYKINRRLGANLWGRSKSPLNRGKENPPGQHGQRRK-KPSDFGTQLMAKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD +VYR KF PT FAARQ VNH Sbjct: 60 GYYGNISEKQFRRLYDEAVRRRGDTSENLIGLLECRLDAVVYRLKFAPTPFAARQLVNHC 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LVNG+ VNI SYR EGDVI VK KSK +A +LEA+Q ERDVP+Y+ V+H M F Sbjct: 120 HILVNGKRVNIPSYRVNEGDVISVKTKSKDMALILEAAQSGERDVPDYMEVDHKEMKGKF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VRIP L DVPY V M+PNLVVEFYSR Sbjct: 180 VRIP-KLGDVPYAVQMEPNLVVEFYSR 205 >gi|317122229|ref|YP_004102232.1| 30S ribosomal protein S4P [Thermaerobacter marianensis DSM 12885] gi|315592209|gb|ADU51505.1| SSU ribosomal protein S4P [Thermaerobacter marianensis DSM 12885] Length = 201 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 131/206 (63%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KH + RR+G L G PK P R Y PG HG R+ K S +G +L KQK++ Sbjct: 1 MARYTGPKHAMCRRVGRPLCGSPKCPALKRPYPPGQHGPGRRQKLSEYGRRLLEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F+ A RS+G+T L+ LE+RLD +VYR F P+I+AARQ V H H Sbjct: 61 MYG-VLERQFRRYFERAQRSKGNTGERLLQLLETRLDNLVYRMGFAPSIWAARQLVVHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR V+ SY+ + GDVI V++KS+++ + E+ A+R P+Y+SV + T + Sbjct: 120 IQVNGRKVDRPSYQVRPGDVIAVREKSRRIPLIQESLANAQRA-PDYLSVEPERFQGTLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+PS + P+ ++ +L+VEFYSR Sbjct: 179 RVPSRDE---IPIDIEESLIVEFYSR 201 >gi|299535430|ref|ZP_07048752.1| 30S ribosomal protein S4 [Lysinibacillus fusiformis ZC1] gi|298729191|gb|EFI69744.1| 30S ribosomal protein S4 [Lysinibacillus fusiformis ZC1] Length = 200 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IEKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + +G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFRTLFNRAGKMKGVHGENFMILLETRLDNLVYRLGLARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I +++KS+ LA V+EA ++ VP+Y++ + D TF Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISLREKSQNLAVVVEAIEV-NNFVPDYLTFDADKKEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VE+YSR Sbjct: 178 RLPERSE---LSAEINEAFIVEYYSR 200 >gi|182678240|ref|YP_001832386.1| 30S ribosomal protein S4 [Beijerinckia indica subsp. indica ATCC 9039] gi|226697805|sp|B2IJM5|RS4_BEII9 RecName: Full=30S ribosomal protein S4 gi|182634123|gb|ACB94897.1| RNA-binding S4 domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGR KSPVN R YGPG HGQRRK K S FG QL+AKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRSKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GD+ NLI LE RLD +VYRAKFVPT+FA+RQF+NH H Sbjct: 61 YYGNISEKQFRKYYAEAIRMKGDSGDNLIGLLERRLDAVVYRAKFVPTVFASRQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY+ + GDVIEVK+ S+QL VLEASQLAERDVPEY V+H M A Sbjct: 121 IKVNGRRVNIASYQVRVGDVIEVKEASRQLTLVLEASQLAERDVPEYYDVDHGKMSAKVT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +VPYPVIM+PNLV+EFYSR Sbjct: 181 RIPL-PNEVPYPVIMEPNLVIEFYSR 205 >gi|297172490|gb|ADI23462.1| hypothetical protein [uncultured nuHF1 cluster bacterium HF0770_35I22] Length = 204 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 163/206 (79%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +K+KI+RR+G NLWGRPKSPVN R Y PG GQRR+ KPS +GLQL AKQK+K Sbjct: 1 MSKRIKAKYKINRRLGVNLWGRPKSPVNIREYPPGEQGQRRR-KPSDYGLQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+EK+FR ++EA + RGDTS NL+ LE RLD+++YR KFVPT+F+ARQFVNH H Sbjct: 60 YYGNITEKQFRKYYQEATKRRGDTSENLVGILERRLDSVIYRMKFVPTVFSARQFVNHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNGR+VNI SY K D+I V++KS+Q+ VL A + ERDVPEY++VN M TF+ Sbjct: 120 IMVNGRTVNIPSYVVKVDDIISVREKSRQMPLVLLAMESPERDVPEYLTVNPSKMEGTFL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P SL ++PYPV M+PNLV+EFYSR Sbjct: 180 HVP-SLAEIPYPVQMEPNLVIEFYSR 204 >gi|114798436|ref|YP_760657.1| 30S ribosomal protein S4 [Hyphomonas neptunium ATCC 15444] gi|123323195|sp|Q0C0T6|RS4_HYPNA RecName: Full=30S ribosomal protein S4 gi|114738610|gb|ABI76735.1| ribosomal protein S4 [Hyphomonas neptunium ATCC 15444] Length = 205 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 128/205 (62%), Positives = 161/205 (78%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+R S+K+KIDRR+GEN+WGR KSP N R+Y PG HGQ R++K S FG+QL AKQK+K Sbjct: 1 MSRRHSAKYKIDRRVGENIWGRAKSPFNKRNYKPGQHGQNRRNKVSDFGMQLMAKQKLKA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F + EA R +G+++ NLI LESRLD +VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGDITEKQFAKTYVEAARMKGNSAENLIGLLESRLDAVVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V+VNGR NIGS R K GDV++V++KS+ LA VLEA ERD+PEY+ V+ M AT+ Sbjct: 121 VMVNGRRCNIGSARLKPGDVVQVREKSRNLALVLEALGSPERDIPEYVEVDPKAMTATYK 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P+ L DVPYPV M+P VVEFYS Sbjct: 181 RVPA-LADVPYPVKMEPAQVVEFYS 204 >gi|167036828|ref|YP_001664406.1| 30S ribosomal protein S4 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039547|ref|YP_001662532.1| 30S ribosomal protein S4 [Thermoanaerobacter sp. X514] gi|256752659|ref|ZP_05493511.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus CCSD1] gi|300915202|ref|ZP_07132517.1| ribosomal protein S4 [Thermoanaerobacter sp. X561] gi|307725126|ref|YP_003904877.1| 30S ribosomal protein S4 [Thermoanaerobacter sp. X513] gi|320115250|ref|YP_004185409.1| 30S ribosomal protein S4 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226695091|sp|B0KCM7|RS4_THEP3 RecName: Full=30S ribosomal protein S4 gi|226695092|sp|B0K5S0|RS4_THEPX RecName: Full=30S ribosomal protein S4 gi|166853787|gb|ABY92196.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514] gi|166855662|gb|ABY94070.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748479|gb|EEU61531.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus CCSD1] gi|300888926|gb|EFK84073.1| ribosomal protein S4 [Thermoanaerobacter sp. X561] gi|307582187|gb|ADN55586.1| ribosomal protein S4 [Thermoanaerobacter sp. X513] gi|319928341|gb|ADV79026.1| ribosomal protein S4 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 206 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + K P R Y PG HGQ K K + +G+QLR Sbjct: 1 MGRYTGPTCRLCRREGMKLYLKGDKCYTDKCPFARRGYAPGQHGQE-KKKLTNYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+YYG + E++F +++EA+R +G T NL+ LE RLD +V+R F + ARQ Sbjct: 60 KQKLKRYYG-VLERQFERLYEEAERMKGITGENLLQLLERRLDNVVFRLGFAASRPQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V+H H+ VNG+ V+I S+ K GDVI V++KS+ + + +++ R+VP+++ +N D Sbjct: 119 LVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSRSMELIKNNLEVS-RNVPDWLELNKDA 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + + P +Q +L+VE YS+ Sbjct: 178 FEGRVVSLP-RREHIDLP--IQEHLIVELYSK 206 >gi|304319733|ref|YP_003853376.1| 30S ribosomal protein S4 [Parvularcula bermudensis HTCC2503] gi|303298636|gb|ADM08235.1| 30S ribosomal protein S4 [Parvularcula bermudensis HTCC2503] Length = 205 Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 128/204 (62%), Positives = 159/204 (77%), Gaps = 1/204 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+++K+KIDRR+GEN+WGRPKSP N R Y PG+HGQRR K S FG QL AKQK+K Sbjct: 1 MSKRQNAKYKIDRRVGENIWGRPKSPFNRREYKPGMHGQRRAGKMSDFGQQLMAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+F+ I+ EA + +G+T+ +I LESRLD +VYRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFQRIYDEAAKRKGNTAELMIGILESRLDAVVYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI SYR K GDV+EV+++SK +A VLEA QL ERD+P+Y+ V+ M AT V Sbjct: 121 VKVNGVRTNIPSYRLKPGDVVEVRERSKNMALVLEALQLPERDIPDYVDVDPKKMTATLV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFY 204 R+P DVPY M+PNLVVE+Y Sbjct: 181 RVPE-FSDVPYAATMEPNLVVEYY 203 >gi|323488432|ref|ZP_08093679.1| 30S ribosomal protein S4 [Planococcus donghaensis MPA1U2] gi|323397939|gb|EGA90738.1| 30S ribosomal protein S4 [Planococcus donghaensis MPA1U2] Length = 200 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLTGTGKE-LEKRPYAPGQHGANQRRKVSEYGLQLQEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F+++F +A + G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFKTLFNKAGKMPGKHGENFMILLEARLDNVVYRLGLARTRRQARQIVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I S+ K G I ++KS L V EA ++ VPEY++++ D+ TFV Sbjct: 119 ILVDGKRVDIPSFSVKPGQTIAFREKSSNLDVVNEAIEV-NNFVPEYVTIDTDSKTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RLPERSE---LSAEINEQLIVEYYSR 200 >gi|92117193|ref|YP_576922.1| 30S ribosomal protein S4 [Nitrobacter hamburgensis X14] gi|122418035|sp|Q1QMT5|RS4_NITHX RecName: Full=30S ribosomal protein S4 gi|91800087|gb|ABE62462.1| SSU ribosomal protein S4P [Nitrobacter hamburgensis X14] Length = 205 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 138/206 (66%), Positives = 165/206 (80%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MTKRNEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +ISE++F +I+ EA R +GD+ NLI LE RLDT+VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYANISERQFYAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVPTMFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNGR VNI SY+ K GD IEVK SKQLA VLEA+QLAERDVP++I +H+ A FV Sbjct: 121 VKVNGRRVNIPSYKLKVGDAIEVKDASKQLALVLEANQLAERDVPDFIDADHNKQTAKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP L DVP+ V M+P+L+VEFYSR Sbjct: 181 RIPH-LADVPFAVQMEPHLIVEFYSR 205 >gi|302384228|ref|YP_003820051.1| ribosomal protein S4 [Brevundimonas subvibrioides ATCC 15264] gi|302194856|gb|ADL02428.1| ribosomal protein S4 [Brevundimonas subvibrioides ATCC 15264] Length = 205 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 131/205 (63%), Positives = 157/205 (76%), Gaps = 1/205 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+KIDR +GENLWGR KSPVN RSYGPG HGQRRKSK S FGLQL+AKQK+K Sbjct: 1 MSKRHSAKYKIDRAMGENLWGRAKSPVNKRSYGPGQHGQRRKSKVSDFGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +++EK+FR + EA R +G+TS LI LE+RLD VYRAKFVPT +AARQFVNH H Sbjct: 61 YYANLTEKQFRKTYDEAARRKGNTSETLIGLLEARLDATVYRAKFVPTPWAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDV+EVK+KS+ +A VLEA Q ERD+P+Y+ + FV Sbjct: 121 VTVNGKKVNIASYTLKPGDVVEVKEKSRNMALVLEAQQSGERDIPDYLELGDRGFSVRFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R P L DVP+ V M+PNLVVE+YS Sbjct: 181 RFPE-LADVPFAVKMEPNLVVEYYS 204 >gi|220920404|ref|YP_002495705.1| 30S ribosomal protein S4 [Methylobacterium nodulans ORS 2060] gi|254764597|sp|B8IB09|RS4_METNO RecName: Full=30S ribosomal protein S4 gi|219945010|gb|ACL55402.1| RNA-binding S4 domain protein [Methylobacterium nodulans ORS 2060] Length = 205 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 136/206 (66%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRIQAKHKLDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +I+EK+FR + EA R RGD+ NLI LE RLD ++YRAKFV T FAARQFVNH H Sbjct: 61 YYANITEKQFRRYYAEAIRLRGDSGENLIGLLERRLDAVIYRAKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI S+ K GDVIEVK+ SKQL V+ ASQLAERDVP+YI V+H M A F Sbjct: 121 IKVNGQRVNIPSFLVKPGDVIEVKESSKQLEIVVVASQLAERDVPDYIEVDHGKMTARFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PN V+EFYSR Sbjct: 181 RVP-TLSEVPYPVHMEPNQVIEFYSR 205 >gi|170740488|ref|YP_001769143.1| 30S ribosomal protein S4 [Methylobacterium sp. 4-46] gi|226699090|sp|B0UDI8|RS4_METS4 RecName: Full=30S ribosomal protein S4 gi|168194762|gb|ACA16709.1| RNA-binding S4 domain protein [Methylobacterium sp. 4-46] Length = 205 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR +KHK+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRIQAKHKLDRRLGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YY +I+EK+FR + EA R RGD+ NL+ LE RLD +VYR+KFV T FAARQFVNH H Sbjct: 61 YYANITEKQFRRYYAEAIRLRGDSGENLVGLLERRLDAVVYRSKFVATPFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY K GDVIEVK+ SKQL V+ ASQLAERDVP+YI +H M A F Sbjct: 121 IRVNGQRVNIPSYLVKPGDVIEVKESSKQLEIVVVASQLAERDVPDYIEADHGKMTARFT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PN V+EFYSR Sbjct: 181 RVP-TLSEVPYPVHMEPNQVIEFYSR 205 >gi|26399200|sp|Q9SMG1|RR4_FUNHY RecName: Full=30S ribosomal protein S4, chloroplastic gi|6015522|emb|CAB57798.1| small ribosomal protein 4 [Funaria hygrometrica] Length = 201 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGVLPGLTNKTPQLKSSSP----NQSAAKKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVN V+I SYRCK D I VK + K A + + +++ VP +++ + Sbjct: 116 VLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKAKVPNHLTFDSTQKKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 NQI---LDRESIGLKINELLVVEYYSR 199 >gi|311031300|ref|ZP_07709390.1| 30S ribosomal protein S4 [Bacillus sp. m3-13] Length = 200 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGVSLSGTGKE-LEKRPYAPGQHGPNQRRKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FRSIF A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRSIFDAAGKMQGKHGENFMILLESRLDNLVYRLGLARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I S+R K G VI V++KS+ L+SV E+ ++ VPEY++ D + TF Sbjct: 119 ITVDGSRVDIPSFRVKPGQVIGVREKSRNLSSVKESVEV-NNFVPEYLTFTADALEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFYSR Sbjct: 178 RLPERSE---LAAEINEALIVEFYSR 200 >gi|307266987|ref|ZP_07548503.1| ribosomal protein S4 [Thermoanaerobacter wiegelii Rt8.B1] gi|326390634|ref|ZP_08212189.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus JW 200] gi|306917972|gb|EFN48230.1| ribosomal protein S4 [Thermoanaerobacter wiegelii Rt8.B1] gi|325993312|gb|EGD51749.1| ribosomal protein S4 [Thermoanaerobacter ethanolicus JW 200] Length = 206 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + K PV R Y PG HGQ K K + +G+QLR Sbjct: 1 MGRYIGPTCRLCRREGMKLYLKGDKCYTDKCPVARRGYAPGQHGQE-KKKLTNYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+YYG + E++F ++EA+R +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKLKRYYG-VLERQFVRYYEEAERMKGITGENLLQLLERRLDNVVYRLGFAASRPQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V+H H+ VNG+ V+I S+ K GDVI V++KS+ + + +++ R+VP+++ +N D Sbjct: 119 LVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSRSMELIKNNLEVS-RNVPDWLELNKDA 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + + P +Q +L+VE YS+ Sbjct: 178 FEGRVVSLP-RREHIDLP--IQEHLIVELYSK 206 >gi|228941836|ref|ZP_04104383.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960923|ref|ZP_04122556.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974761|ref|ZP_04135327.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981356|ref|ZP_04141656.1| 30S ribosomal protein S4 [Bacillus thuringiensis Bt407] gi|229048362|ref|ZP_04193930.1| 30S ribosomal protein S4 [Bacillus cereus AH676] gi|229087217|ref|ZP_04219364.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-44] gi|229112121|ref|ZP_04241664.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-15] gi|229147216|ref|ZP_04275574.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST24] gi|228636326|gb|EEK92798.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST24] gi|228671444|gb|EEL26745.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-15] gi|228696098|gb|EEL48936.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-44] gi|228723087|gb|EEL74464.1| 30S ribosomal protein S4 [Bacillus cereus AH676] gi|228778556|gb|EEM26823.1| 30S ribosomal protein S4 [Bacillus thuringiensis Bt407] gi|228785164|gb|EEM33177.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798819|gb|EEM45799.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818048|gb|EEM64126.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942441|gb|AEA18337.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar chinensis CT-43] Length = 200 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RHAERAE---LPAEINEALIVEFYSR 200 >gi|222098129|ref|YP_002532186.1| 30S ribosomal protein s4 [Bacillus cereus Q1] gi|254764569|sp|B9J159|RS4_BACCQ RecName: Full=30S ribosomal protein S4 gi|221242187|gb|ACM14897.1| ribosomal protein S4 (30S ribosomal protein S4) [Bacillus cereus Q1] Length = 200 Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 ITVDGSRVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RHAERAE---LPAEINEALIVEFYSR 200 >gi|228910481|ref|ZP_04074296.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 200] gi|228849247|gb|EEM94086.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 200] Length = 200 Score = 273 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVIVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RH---AERSELPAEINEALIVEFYSR 200 >gi|30022730|ref|NP_834361.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 14579] gi|206969984|ref|ZP_03230938.1| 30S ribosomal protein S4 [Bacillus cereus AH1134] gi|218235372|ref|YP_002369450.1| 30S ribosomal protein S4 [Bacillus cereus B4264] gi|228923404|ref|ZP_04086692.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954925|ref|ZP_04116943.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072158|ref|ZP_04205367.1| 30S ribosomal protein S4 [Bacillus cereus F65185] gi|229081908|ref|ZP_04214400.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-2] gi|229129939|ref|ZP_04258905.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-Cer4] gi|229152850|ref|ZP_04281033.1| 30S ribosomal protein S4 [Bacillus cereus m1550] gi|229180974|ref|ZP_04308309.1| 30S ribosomal protein S4 [Bacillus cereus 172560W] gi|229192859|ref|ZP_04319817.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 10876] gi|296505124|ref|YP_003666824.1| 30S ribosomal protein S4 [Bacillus thuringiensis BMB171] gi|38372409|sp|Q817A4|RS4_BACCR RecName: Full=30S ribosomal protein S4 gi|226697802|sp|B7H711|RS4_BACC4 RecName: Full=30S ribosomal protein S4 gi|29898289|gb|AAP11562.1| SSU ribosomal protein S4P [Bacillus cereus ATCC 14579] gi|206735672|gb|EDZ52840.1| 30S ribosomal protein S4 [Bacillus cereus AH1134] gi|218163329|gb|ACK63321.1| ribosomal protein S4 [Bacillus cereus B4264] gi|228590698|gb|EEK48559.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 10876] gi|228602531|gb|EEK60017.1| 30S ribosomal protein S4 [Bacillus cereus 172560W] gi|228630670|gb|EEK87316.1| 30S ribosomal protein S4 [Bacillus cereus m1550] gi|228653630|gb|EEL09502.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-Cer4] gi|228701496|gb|EEL53990.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-2] gi|228711092|gb|EEL63058.1| 30S ribosomal protein S4 [Bacillus cereus F65185] gi|228804746|gb|EEM51347.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836358|gb|EEM81711.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326176|gb|ADH09104.1| 30S ribosomal protein S4 [Bacillus thuringiensis BMB171] Length = 200 Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RH---AERSELPAEINEALIVEFYSR 200 >gi|23099660|ref|NP_693126.1| 30S ribosomal protein S4 [Oceanobacillus iheyensis HTE831] gi|26399359|sp|P59130|RS4_OCEIH RecName: Full=30S ribosomal protein S4 gi|22777890|dbj|BAC14161.1| 30S ribosomal protein S4 [Oceanobacillus iheyensis HTE831] Length = 200 Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K ++ R Y PG HG ++ K S +GLQ++ KQK++ Sbjct: 1 MARYTGSVWKKSRRLGISLTGTGKE-LDKRPYAPGQHGPNQRRKLSEYGLQMQEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-LNERQFRTLFDKAGKMKGIHGENFMILLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G V+I SY K G VI +++KSK L V EA + A VPEY S + D M ++ Sbjct: 119 VTVDGGRVDIPSYAIKPGQVIGLREKSKNLDVVKEALE-ANSFVPEYTSFDADKMEGSYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VEFYSR Sbjct: 178 RFPERSE---LPAEINEQLIVEFYSR 200 >gi|85373950|ref|YP_458012.1| 30S ribosomal protein S4 [Erythrobacter litoralis HTCC2594] gi|122544575|sp|Q2NAS6|RS4_ERYLH RecName: Full=30S ribosomal protein S4 gi|84787033|gb|ABC63215.1| ribosomal protein S4 [Erythrobacter litoralis HTCC2594] Length = 204 Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKGKTSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR + EA R +GDT NLI LE RLD +VYRAKF PT+FAARQ VNH H Sbjct: 61 YYGDVTEKQFRRTYAEASRMKGDTGQNLIGLLEQRLDMVVYRAKFAPTVFAARQIVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R K GDVI + K+K++A V+EA L ER++P+Y++ + ++ V TF Sbjct: 121 IYVNGVKTNIPSARVKVGDVISLGNKAKEMALVIEAQSLPEREIPDYVAPDGNDKV-TFT 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLVVEFYSR 204 >gi|126651345|ref|ZP_01723552.1| 30S ribosomal protein S4 [Bacillus sp. B14905] gi|169829591|ref|YP_001699749.1| 30S ribosomal protein S4 [Lysinibacillus sphaericus C3-41] gi|226699085|sp|B1HX43|RS4_LYSSC RecName: Full=30S ribosomal protein S4 gi|126591874|gb|EAZ85957.1| 30S ribosomal protein S4 [Bacillus sp. B14905] gi|168994079|gb|ACA41619.1| 30S ribosomal protein S4 [Lysinibacillus sphaericus C3-41] Length = 200 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IEKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F A + +G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFRTLFNRAGKMKGVHGENFMILLETRLDNLVYRLGLARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I S+ K G I +++KS+ LA V EA ++ VP+Y++ + D TF Sbjct: 119 ILVDGKRVDIPSFSVKPGQTISLREKSQNLAVVGEAIEV-NNFVPDYLTFDADKKEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + + +VE+YSR Sbjct: 178 RLPERSE---LSAEINESFIVEYYSR 200 >gi|94497376|ref|ZP_01303947.1| 30S ribosomal protein S4 [Sphingomonas sp. SKA58] gi|94423239|gb|EAT08269.1| 30S ribosomal protein S4 [Sphingomonas sp. SKA58] Length = 204 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 126/206 (61%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTI++ARQ V+H H Sbjct: 61 YYGDITEKQFKKNYVEAARMKGDTGQNLIGLLERRLDALVYRAKFAPTIWSARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S K GD I + +K++++A VLEA L ERD+P+Y+S + V T+V Sbjct: 121 IYVNGVKCNIASRLVKPGDEITLGKKAQEMALVLEAQNLPERDIPDYVSPDGAAKV-TYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|294012169|ref|YP_003545629.1| ribosomal protein S4 [Sphingobium japonicum UT26S] gi|292675499|dbj|BAI97017.1| ribosomal protein S4 [Sphingobium japonicum UT26S] Length = 204 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 124/206 (60%), Positives = 158/206 (76%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTI+++RQ V+H H Sbjct: 61 YYGDITEKQFKKNYTEAARMKGDTGQNLIGLLERRLDAVVYRAKFAPTIWSSRQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S K GD I + +K++++A VLEA L ERD+P+Y+ + V T+V Sbjct: 121 IYVNGVKCNIASRLVKPGDEITLGKKAQEMALVLEAQGLPERDIPDYVVADGAAKV-TYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|310815406|ref|YP_003963370.1| ribosomal protein S4 [Ketogulonicigenium vulgare Y25] gi|308754141|gb|ADO42070.1| ribosomal protein S4 [Ketogulonicigenium vulgare Y25] Length = 192 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 131/192 (68%), Positives = 159/192 (82%), Gaps = 1/192 (0%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +GEN+WGRPKSP+N R YGPG HGQRRK K S FG QLRAKQK+K YYGD++EK+FR I+ Sbjct: 1 MGENIWGRPKSPLNRREYGPGQHGQRRKGKLSDFGTQLRAKQKLKGYYGDLTEKQFRRIY 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 +A+R++GDT NL+ LE RLD +VYRAK+V T+FAARQFVNH HV VNG SVNI SYR Sbjct: 61 SDAERTKGDTGENLVGLLERRLDAVVYRAKWVATVFAARQFVNHGHVTVNGVSVNIPSYR 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 KEGDVIE++ KSKQLA VLEA LAER+VP+YI V++ + AT+VR P SL DVPYPVI Sbjct: 121 VKEGDVIEIRAKSKQLAVVLEAINLAERNVPDYIEVDNSKLTATYVRTP-SLADVPYPVI 179 Query: 195 MQPNLVVEFYSR 206 M+PNL+VEFY++ Sbjct: 180 MEPNLIVEFYAK 191 >gi|154687087|ref|YP_001422248.1| 30S ribosomal protein S4 [Bacillus amyloliquefaciens FZB42] gi|308174649|ref|YP_003921354.1| 30S ribosomal protein S4 (BS4) [Bacillus amyloliquefaciens DSM 7] gi|171855002|sp|A7Z7P1|RS4_BACA2 RecName: Full=30S ribosomal protein S4 gi|154352938|gb|ABS75017.1| RpsD [Bacillus amyloliquefaciens FZB42] gi|307607513|emb|CBI43884.1| ribosomal protein S4 (BS4) [Bacillus amyloliquefaciens DSM 7] gi|328554576|gb|AEB25068.1| 30S ribosomal protein S4 [Bacillus amyloliquefaciens TA208] gi|328912981|gb|AEB64577.1| 30S ribosomal protein S4 [Bacillus amyloliquefaciens LL3] Length = 200 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L++RLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAAKMTGKHGENFMILLDARLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY+ K G I V++KS+ L+ + E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYQVKPGQTIGVREKSRNLSIIKESVEV-NNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EINEALIVEFYSR 200 >gi|30264729|ref|NP_847106.1| 30S ribosomal protein S4 [Bacillus anthracis str. Ames] gi|42783839|ref|NP_981086.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 10987] gi|47530203|ref|YP_021552.1| 30S ribosomal protein S4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187548|ref|YP_030801.1| 30S ribosomal protein S4 [Bacillus anthracis str. Sterne] gi|49481409|ref|YP_038704.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140852|ref|YP_085977.1| 30S ribosomal protein S4 [Bacillus cereus E33L] gi|65322027|ref|ZP_00394986.1| COG0522: Ribosomal protein S4 and related proteins [Bacillus anthracis str. A2012] gi|118479796|ref|YP_896947.1| 30S ribosomal protein S4 [Bacillus thuringiensis str. Al Hakam] gi|165869836|ref|ZP_02214494.1| ribosomal protein S4 [Bacillus anthracis str. A0488] gi|167633851|ref|ZP_02392174.1| ribosomal protein S4 [Bacillus anthracis str. A0442] gi|167638038|ref|ZP_02396316.1| ribosomal protein S4 [Bacillus anthracis str. A0193] gi|170685670|ref|ZP_02876893.1| ribosomal protein S4 [Bacillus anthracis str. A0465] gi|170705531|ref|ZP_02895995.1| ribosomal protein S4 [Bacillus anthracis str. A0389] gi|177651189|ref|ZP_02934020.1| ribosomal protein S4 [Bacillus anthracis str. A0174] gi|190568368|ref|ZP_03021276.1| ribosomal protein S4 [Bacillus anthracis Tsiankovskii-I] gi|196032907|ref|ZP_03100320.1| ribosomal protein S4 [Bacillus cereus W] gi|196040797|ref|ZP_03108095.1| ribosomal protein S4 [Bacillus cereus NVH0597-99] gi|218905885|ref|YP_002453719.1| ribosomal protein S4 [Bacillus cereus AH820] gi|225866636|ref|YP_002752014.1| 30S ribosomal protein S4 [Bacillus cereus 03BB102] gi|227817448|ref|YP_002817457.1| 30S ribosomal protein S4 [Bacillus anthracis str. CDC 684] gi|228917301|ref|ZP_04080856.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929709|ref|ZP_04092726.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935965|ref|ZP_04098775.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948386|ref|ZP_04110669.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987906|ref|ZP_04148014.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093753|ref|ZP_04224852.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-42] gi|229124225|ref|ZP_04253417.1| 30S ribosomal protein S4 [Bacillus cereus 95/8201] gi|229158263|ref|ZP_04286330.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 4342] gi|229186914|ref|ZP_04314069.1| 30S ribosomal protein S4 [Bacillus cereus BGSC 6E1] gi|229602554|ref|YP_002868937.1| 30S ribosomal protein S4 [Bacillus anthracis str. A0248] gi|254687468|ref|ZP_05151324.1| 30S ribosomal protein S4 [Bacillus anthracis str. CNEVA-9066] gi|254725030|ref|ZP_05186813.1| 30S ribosomal protein S4 [Bacillus anthracis str. A1055] gi|254736768|ref|ZP_05194474.1| 30S ribosomal protein S4 [Bacillus anthracis str. Western North America USA6153] gi|254741805|ref|ZP_05199492.1| 30S ribosomal protein S4 [Bacillus anthracis str. Kruger B] gi|254754597|ref|ZP_05206632.1| 30S ribosomal protein S4 [Bacillus anthracis str. Vollum] gi|254757429|ref|ZP_05209456.1| 30S ribosomal protein S4 [Bacillus anthracis str. Australia 94] gi|300118469|ref|ZP_07056212.1| 30S ribosomal protein S4 [Bacillus cereus SJ1] gi|301056163|ref|YP_003794374.1| 30S ribosomal protein S4 [Bacillus anthracis CI] gi|38372415|sp|Q81KT2|RS4_BACAN RecName: Full=30S ribosomal protein S4 gi|61215457|sp|Q633E0|RS4_BACCZ RecName: Full=30S ribosomal protein S4 gi|61215551|sp|Q6HCM2|RS4_BACHK RecName: Full=30S ribosomal protein S4 gi|61215626|sp|Q72Z76|RS4_BACC1 RecName: Full=30S ribosomal protein S4 gi|152060934|sp|A0RJP7|RS4_BACAH RecName: Full=30S ribosomal protein S4 gi|226697800|sp|B7JS31|RS4_BACC0 RecName: Full=30S ribosomal protein S4 gi|254764566|sp|C3PBC1|RS4_BACAA RecName: Full=30S ribosomal protein S4 gi|254764567|sp|C3L9W4|RS4_BACAC RecName: Full=30S ribosomal protein S4 gi|254764568|sp|C1EV03|RS4_BACC3 RecName: Full=30S ribosomal protein S4 gi|30259404|gb|AAP28592.1| 30S ribosomal protein S4 [Bacillus anthracis str. Ames] gi|42739769|gb|AAS43694.1| ribosomal protein S4 [Bacillus cereus ATCC 10987] gi|47505351|gb|AAT34027.1| ribosomal protein S4 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181475|gb|AAT56851.1| ribosomal protein S4 [Bacillus anthracis str. Sterne] gi|49332965|gb|AAT63611.1| ribosomal protein S4 (30S ribosomal protein S4) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974321|gb|AAU15871.1| ribosomal protein S4 (30S ribosomal protein S4) [Bacillus cereus E33L] gi|118419021|gb|ABK87440.1| SSU ribosomal protein S4P [Bacillus thuringiensis str. Al Hakam] gi|164714665|gb|EDR20184.1| ribosomal protein S4 [Bacillus anthracis str. A0488] gi|167513855|gb|EDR89223.1| ribosomal protein S4 [Bacillus anthracis str. A0193] gi|167530652|gb|EDR93354.1| ribosomal protein S4 [Bacillus anthracis str. A0442] gi|170129656|gb|EDS98519.1| ribosomal protein S4 [Bacillus anthracis str. A0389] gi|170670134|gb|EDT20874.1| ribosomal protein S4 [Bacillus anthracis str. A0465] gi|172083015|gb|EDT68077.1| ribosomal protein S4 [Bacillus anthracis str. A0174] gi|190560624|gb|EDV14601.1| ribosomal protein S4 [Bacillus anthracis Tsiankovskii-I] gi|195994336|gb|EDX58291.1| ribosomal protein S4 [Bacillus cereus W] gi|196028251|gb|EDX66860.1| ribosomal protein S4 [Bacillus cereus NVH0597-99] gi|218535551|gb|ACK87949.1| ribosomal protein S4 [Bacillus cereus AH820] gi|225790794|gb|ACO31011.1| 30S ribosomal protein S4 [Bacillus cereus 03BB102] gi|227006605|gb|ACP16348.1| 30S ribosomal protein S4 [Bacillus anthracis str. CDC 684] gi|228596651|gb|EEK54316.1| 30S ribosomal protein S4 [Bacillus cereus BGSC 6E1] gi|228625221|gb|EEK81981.1| 30S ribosomal protein S4 [Bacillus cereus ATCC 4342] gi|228659527|gb|EEL15175.1| 30S ribosomal protein S4 [Bacillus cereus 95/8201] gi|228689638|gb|EEL43446.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-42] gi|228771829|gb|EEM20287.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811373|gb|EEM57711.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823733|gb|EEM69555.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829888|gb|EEM75508.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842342|gb|EEM87435.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266962|gb|ACQ48599.1| 30S ribosomal protein S4 [Bacillus anthracis str. A0248] gi|298724141|gb|EFI64840.1| 30S ribosomal protein S4 [Bacillus cereus SJ1] gi|300378332|gb|ADK07236.1| 30S ribosomal protein S4 [Bacillus cereus biovar anthracis str. CI] Length = 200 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RHAERAE---LPAEINEALIVEFYSR 200 >gi|222151637|ref|YP_002560793.1| 30S ribosomal protein S4 [Macrococcus caseolyticus JCSC5402] gi|254764595|sp|B9E7C9|RS4_MACCJ RecName: Full=30S ribosomal protein S4 gi|222120762|dbj|BAH18097.1| 30S ribosomal protein S4 [Macrococcus caseolyticus JCSC5402] Length = 200 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 125/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LERRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++FR+IF A + +G N ++ L SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-INERQFRTIFDRAGKMKGIHGANFMALLASRLDAVVYQLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SY+ K G VI V++KS++L + E+ +L+ VPEY++ + D + TFV Sbjct: 119 IMVDGARVDIPSYQLKPGQVISVREKSQKLNIIAESVELSNH-VPEYLTFDADKLEGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RVPERSE---LSAEINEQLIVEYYSR 200 >gi|206977164|ref|ZP_03238063.1| 30S ribosomal protein S4 [Bacillus cereus H3081.97] gi|217962143|ref|YP_002340713.1| 30S ribosomal protein S4 [Bacillus cereus AH187] gi|229141392|ref|ZP_04269930.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST26] gi|229198816|ref|ZP_04325510.1| 30S ribosomal protein S4 [Bacillus cereus m1293] gi|226697803|sp|B7HSJ2|RS4_BACC7 RecName: Full=30S ribosomal protein S4 gi|206744649|gb|EDZ56057.1| 30S ribosomal protein S4 [Bacillus cereus H3081.97] gi|217062938|gb|ACJ77188.1| ribosomal protein S4 [Bacillus cereus AH187] gi|228584652|gb|EEK42776.1| 30S ribosomal protein S4 [Bacillus cereus m1293] gi|228642173|gb|EEK98466.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST26] Length = 200 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSSNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RHAERAE---LPAEINEALIVEFYSR 200 >gi|304315968|ref|YP_003851113.1| ribosomal protein S4 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777470|gb|ADL68029.1| ribosomal protein S4 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 206 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S K+ RR G L+ + K P R Y PG HGQ K K + +G QLR Sbjct: 1 MARYTESTCKLCRREGMKLFLKGDKCYTEKCPFARRPYAPGQHGQN-KKKLTNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++YYG + E++F F+EA+R +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKLRRYYG-VLERQFERYFEEAERMKGITGDNLLQLLERRLDNVVYRLSIASSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 FV H H+LVNG+ V+I SY K GDVI VK SK L + + A ++P+++ N D+ Sbjct: 119 FVAHGHILVNGKKVDIPSYLVKAGDVISVKDSSKSLEVIKNNVE-ASTNIPDWLDFNKDS 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ + + PV + +L+VE YSR Sbjct: 178 LEGKVLSLPTR-EHIDLPV--EEHLIVELYSR 206 >gi|196044058|ref|ZP_03111295.1| ribosomal protein S4 [Bacillus cereus 03BB108] gi|196025394|gb|EDX64064.1| ribosomal protein S4 [Bacillus cereus 03BB108] gi|324328549|gb|ADY23809.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 200 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RH---AERSELPAEINEALIVEFYSR 200 >gi|87200259|ref|YP_497516.1| 30S ribosomal protein S4 [Novosphingobium aromaticivorans DSM 12444] gi|123488982|sp|Q2G641|RS4_NOVAD RecName: Full=30S ribosomal protein S4 gi|87135940|gb|ABD26682.1| SSU ribosomal protein S4P [Novosphingobium aromaticivorans DSM 12444] Length = 203 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 126/206 (61%), Positives = 162/206 (78%), Gaps = 3/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR++SK+KIDRR+GEN+WGRPKS VN RSYGPG HGQRRKSK S FG+QLRAKQK+K Sbjct: 1 MSKRKASKYKIDRRLGENIWGRPKSSVNRRSYGPGQHGQRRKSKVSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ ++EA + +GDT NLI LE RLD +VYRAKF PTIF+ARQ V+H H Sbjct: 61 YYGDVTEKQFKRTYQEASKMKGDTGQNLIGLLEQRLDMVVYRAKFAPTIFSARQVVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R + GDV+ + +K+K++A + EA L ER+VP+Y++ + D TF Sbjct: 121 IYVNGVKCNIASRRVRPGDVVSLGKKAKEMALIAEAQALPEREVPDYVAADGDK--VTFT 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 179 RVP-TLDEVPYPVKMEPNLVVEFYSR 203 >gi|15615771|ref|NP_244075.1| 30S ribosomal protein S4 [Bacillus halodurans C-125] gi|26399508|sp|Q9K7Z8|RS4_BACHD RecName: Full=30S ribosomal protein S4 gi|10175832|dbj|BAB06928.1| 30S ribosomal protein S4 [Bacillus halodurans C-125] Length = 200 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPTWKISRRLGISLSGTGKE-LQKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR IF +A + G N + LESRLD +VYR T AARQ VNH H Sbjct: 60 MYG-VNERQFRRIFNDAGKMAGIHGENFMILLESRLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SYR K G VI V++KS+ L + E+ + + VP Y++ + D + T+ Sbjct: 119 ITVDGQRVDIPSYRVKPGQVIGVREKSRNLQVIKESLE-SNDFVPAYVTFDADKLEGTYS 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VEFYSR Sbjct: 178 RFPERSE---LPAEITEALIVEFYSR 200 >gi|260435631|ref|ZP_05789601.1| ribosomal protein S4 [Synechococcus sp. WH 8109] gi|260413505|gb|EEX06801.1| ribosomal protein S4 [Synechococcus sp. WH 8109] Length = 241 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 40 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 96 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 97 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 155 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ + +VP ++ ++ + A Sbjct: 156 VTVNGRVTDIASYQCKPGDVIAIRERKCSKKLAEANLEFPGLANVPSHLELDKSKLSAKV 215 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 216 T---ARCEREWVALEINELLVVEYYSR 239 >gi|217976302|ref|YP_002360449.1| 30S ribosomal protein S4 [Methylocella silvestris BL2] gi|254764599|sp|B8EL92|RS4_METSB RecName: Full=30S ribosomal protein S4 gi|217501678|gb|ACK49087.1| RNA-binding S4 domain protein [Methylocella silvestris BL2] Length = 205 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 137/206 (66%), Positives = 163/206 (79%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +K+KIDRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QL+AKQK+K Sbjct: 1 MTKRAEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R RGD+ NLI LE RLD ++YRAKFVPT+FAARQFVNH H Sbjct: 61 YYGNISEKQFRKYYAEAIRLRGDSGDNLIGLLERRLDAVIYRAKFVPTVFAARQFVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI SY K GDVIEVK+ S+++ VLEA QLAERDVP+Y V+H+ M A Sbjct: 121 VKVNGKRVNIASYLVKVGDVIEVKESSREILIVLEAKQLAERDVPDYYEVDHNKMTAKIT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP DVPYPV+M+PNLV+EFYSR Sbjct: 181 RIPL-PADVPYPVLMEPNLVIEFYSR 205 >gi|326387399|ref|ZP_08209008.1| 30S ribosomal protein S4 [Novosphingobium nitrogenifigens DSM 19370] gi|326208055|gb|EGD58863.1| 30S ribosomal protein S4 [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 130/206 (63%), Positives = 162/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR++SK+KIDRR+GEN+WGRPKS VN RSYGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRKASKYKIDRRLGENIWGRPKSSVNRRSYGPGQHGQRRKGKLSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+S ++EA R +GDT NL+ LE RLD +VYR+KF PTIFAARQ VNH H Sbjct: 61 YYGDVTEKQFKSTYQEASRMKGDTGQNLVGLLEQRLDMVVYRSKFAPTIFAARQIVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R + GDVI + K+K++A + EA L ERDVP+Y+ ++ + V TFV Sbjct: 121 IRVNGVKCNIASRRVRPGDVITLGTKAKEMALIAEAQALPERDVPDYVLIDGTDKV-TFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVKMEPNLVVEFYSR 204 >gi|307292704|ref|ZP_07572550.1| ribosomal protein S4 [Sphingobium chlorophenolicum L-1] gi|306880770|gb|EFN11986.1| ribosomal protein S4 [Sphingobium chlorophenolicum L-1] Length = 204 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 158/206 (76%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTIF+ARQ V+H H Sbjct: 61 YYGDITEKQFKKSYIEAARMKGDTGQNLIGLLERRLDAVVYRAKFAPTIFSARQIVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S K GD I + +K++++A VLEA L ERD+P+Y+S + T+V Sbjct: 121 IYVNGVKCNIASRLVKPGDEITLGKKAQEMALVLEAQSLPERDIPDYVSPDGAA-KITYV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P SL +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-SLDEVPYPVKMEPNLVVEFYSR 204 >gi|121534659|ref|ZP_01666480.1| ribosomal protein S4 [Thermosinus carboxydivorans Nor1] gi|121306679|gb|EAX47600.1| ribosomal protein S4 [Thermosinus carboxydivorans Nor1] Length = 208 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + RR G L+ + K P + R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGPVCRQCRREGLKLYLKGDKCYSDKCPFSRRGYAPGQHGQARK-KLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F++ADR +G T NL+ LE RLD +VYR ARQ Sbjct: 60 KQKARRIYG-ILEGQFRNYFEKADRQKGITGENLLIMLERRLDNVVYRLGLAANRTQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H VNGR V+I S++ K GDVI+V++ SK E A LA + VP ++ ++ + Sbjct: 119 LVRHGHFTVNGRRVDIPSFQVKVGDVIQVRESSKDSPLFKEIAEGLAHKTVPAWLELSAN 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +M VR P+ + V +Q +L+VE YSR Sbjct: 179 DMSGKVVRYPTREE---IDVPIQEHLIVELYSR 208 >gi|229019885|ref|ZP_04176683.1| 30S ribosomal protein S4 [Bacillus cereus AH1273] gi|229026111|ref|ZP_04182488.1| 30S ribosomal protein S4 [Bacillus cereus AH1272] gi|229032307|ref|ZP_04188280.1| 30S ribosomal protein S4 [Bacillus cereus AH1271] gi|229175366|ref|ZP_04302881.1| 30S ribosomal protein S4 [Bacillus cereus MM3] gi|228608198|gb|EEK65505.1| 30S ribosomal protein S4 [Bacillus cereus MM3] gi|228729087|gb|EEL80090.1| 30S ribosomal protein S4 [Bacillus cereus AH1271] gi|228735189|gb|EEL85807.1| 30S ribosomal protein S4 [Bacillus cereus AH1272] gi|228741405|gb|EEL91607.1| 30S ribosomal protein S4 [Bacillus cereus AH1273] Length = 200 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 ITVDGSRVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 RH---AERSELAAEINEALIVEFYSR 200 >gi|296444481|ref|ZP_06886446.1| ribosomal protein S4 [Methylosinus trichosporium OB3b] gi|296258128|gb|EFH05190.1| ribosomal protein S4 [Methylosinus trichosporium OB3b] Length = 205 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 131/206 (63%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SK+K+DRR+G+N+WGRPKSPVN R YGPG HGQRRK K S FG QL+AKQK+K Sbjct: 1 MTKRAESKYKLDRRLGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGTQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK+FR + EA R +GD+ NLI LE RLD +VYRAKFVPT+FAARQF+NH H Sbjct: 61 YYGNISEKQFRKYYAEAIRLKGDSGDNLIGLLERRLDAVVYRAKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNGR VNI SY K DV+EVK+ SKQ +VLE+ L ERDVP+Y V+H+ M A Sbjct: 121 IRVNGRRVNIPSYLVKLDDVVEVKESSKQAITVLESVALGERDVPDYYEVDHNKMTAKLN 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +VPYPV M+PNLV+EFYSR Sbjct: 181 RVPL-PNEVPYPVQMEPNLVIEFYSR 205 >gi|34501413|ref|NP_904200.1| ribosomal protein S4 protein [Physcomitrella patens subsp. patens] gi|52783338|sp|Q6YXP3|RR4_PHYPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|34494783|dbj|BAC85050.1| ribosomal protein S4 protein [Physcomitrella patens subsp. patens] Length = 201 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVN V+I SYRCK D I VK + K A + + +++ VP +++ + Sbjct: 116 VLVNDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 NQI---LDRESIGLKINELLVVEYYSR 199 >gi|103486278|ref|YP_615839.1| 30S ribosomal protein S4 [Sphingopyxis alaskensis RB2256] gi|123380035|sp|Q1GV16|RS4_SPHAL RecName: Full=30S ribosomal protein S4 gi|98976355|gb|ABF52506.1| SSU ribosomal protein S4P [Sphingopyxis alaskensis RB2256] Length = 203 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 129/206 (62%), Positives = 160/206 (77%), Gaps = 3/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG+QLRAKQK+K Sbjct: 1 MSKRQSAKYKLDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGIQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGDI+EK+F+ + EA R +GDT NLI LE RLD +VYRAKF PTIF+ARQ V+H H Sbjct: 61 YYGDITEKQFKKNYIEASRMKGDTGQNLIGLLERRLDAVVYRAKFTPTIFSARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI S K GD I + +K++++A V EA L ERD+PEY++V+ AT+V Sbjct: 121 VYVNGVKCNIASRLVKPGDEITLGKKAQEMALVAEAQSLPERDLPEYLAVDGTK--ATYV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 179 RVP-TLDEVPYPVKMEPNLVVEFYSR 203 >gi|288553742|ref|YP_003425677.1| 30S ribosomal protein S4 [Bacillus pseudofirmus OF4] gi|288544902|gb|ADC48785.1| 30S ribosomal protein S4 [Bacillus pseudofirmus OF4] Length = 200 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LAKRPYAPGQHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++E++FR IF +A + G N + LESRLD +VYR T AARQ VNH H Sbjct: 60 MFG-VNERQFRRIFDDAGKMPGIHGENFMILLESRLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I +++KS+ L+ V EA + A P Y++ + + + TF Sbjct: 119 IMVDGGRVDIPSYRVKPGQTIALREKSRDLSVVKEALE-ANDFTPAYVTFDAEKLEGTFS 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEITEALIVEFYSR 200 >gi|158319571|ref|YP_001512078.1| ribosomal protein S4 [Alkaliphilus oremlandii OhILAs] gi|172048249|sp|A8MLG8|RS4A_ALKOO RecName: Full=30S ribosomal protein S4 A gi|158139770|gb|ABW18082.1| ribosomal protein S4 [Alkaliphilus oremlandii OhILAs] Length = 207 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K ++ R+Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTEAVCRLCRREGMKLYLKGDRCYTDKCAISKRTYAPGQHGQSRK-KLSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K++YG + E +FR F+ AD+ G T NL+ LE+RLD + YR F + ARQ Sbjct: 60 KQKAKRFYG-VLESQFRKYFEIADKQAGITGENLLRLLETRLDNVAYRLGFGSSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H VNG+ V+I SY GD I V +KSK A ++ A+ + P +++V+ + Sbjct: 119 LVVHGHFTVNGKKVDIPSYLVSAGDTIAVAEKSKSSAKFKALAENAKGNTPNWLTVDVEK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + V +PS + + NL+VE YS+ Sbjct: 179 LEGKVVALPSR---EDIDLEIAENLIVELYSK 207 >gi|296332057|ref|ZP_06874521.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675548|ref|YP_003867220.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii str. W23] gi|296150828|gb|EFG91713.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413792|gb|ADM38911.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. spizizenii str. W23] Length = 200 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L+SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY+ K G I V++KS+ L+ + E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYQVKPGQTIGVREKSRNLSIIKESVEV-NNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EINEALIVEFYSR 200 >gi|218899810|ref|YP_002448221.1| ribosomal protein S4 [Bacillus cereus G9842] gi|228903174|ref|ZP_04067308.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 4222] gi|228967755|ref|ZP_04128771.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar sotto str. T04001] gi|229163648|ref|ZP_04291596.1| 30S ribosomal protein S4 [Bacillus cereus R309803] gi|226697801|sp|B7IKS0|RS4_BACC2 RecName: Full=30S ribosomal protein S4 gi|218544223|gb|ACK96617.1| ribosomal protein S4 [Bacillus cereus G9842] gi|228619785|gb|EEK76663.1| 30S ribosomal protein S4 [Bacillus cereus R309803] gi|228791909|gb|EEM39495.1| 30S ribosomal protein S4 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856456|gb|EEN00982.1| 30S ribosomal protein S4 [Bacillus thuringiensis IBL 4222] Length = 200 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPNQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + P + L+VEFYSR Sbjct: 178 RHAERAE---LPAEINEALIVEFYSR 200 >gi|229076157|ref|ZP_04209125.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-18] gi|229099115|ref|ZP_04230049.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-29] gi|229105283|ref|ZP_04235932.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-28] gi|229118145|ref|ZP_04247504.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-3] gi|228665368|gb|EEL20851.1| 30S ribosomal protein S4 [Bacillus cereus Rock1-3] gi|228678209|gb|EEL32437.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-28] gi|228684343|gb|EEL38287.1| 30S ribosomal protein S4 [Bacillus cereus Rock3-29] gi|228707020|gb|EEL59225.1| 30S ribosomal protein S4 [Bacillus cereus Rock4-18] Length = 200 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 RH---AERSELAAEINEALIVEFYSR 200 >gi|148554062|ref|YP_001261644.1| 30S ribosomal protein S4 [Sphingomonas wittichii RW1] gi|172048096|sp|A5V5E0|RS4_SPHWW RecName: Full=30S ribosomal protein S4 gi|148499252|gb|ABQ67506.1| SSU ribosomal protein S4P [Sphingomonas wittichii RW1] Length = 204 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S +G+QL+AKQK+K Sbjct: 1 MSKRTSAKYKLDRRMGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDYGIQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ + EA R +GDTS NLI LE RLD +VYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFKRNYTEASRMKGDTSQNLIGLLERRLDAVVYRAKFAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S + K GD I + K++++A VLEA L+ERDVPEYI+ + V TFV Sbjct: 121 IRVNGVKCNIASRQVKPGDEISLGSKAQEMALVLEAQGLSERDVPEYIAQDGGAKV-TFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|288959195|ref|YP_003449536.1| small subunit ribosomal protein S4 [Azospirillum sp. B510] gi|288911503|dbj|BAI72992.1| small subunit ribosomal protein S4 [Azospirillum sp. B510] Length = 204 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 131/206 (63%), Positives = 157/206 (76%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+ SK+KIDRR+G NLWGR KSP+N R YGPG HGQRRK KPS +GLQL AKQK+K Sbjct: 1 MSKRQESKYKIDRRLGVNLWGRAKSPLNKREYGPGQHGQRRK-KPSDYGLQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I EK+FR I+ EA R +GDT NLI LE RLD +VYR KF PT FAARQ +NH H Sbjct: 60 YYGNIGEKQFRRIYAEAVRRKGDTGENLIGLLERRLDAVVYRMKFAPTPFAARQLINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR +NI S R K+ D +EV+ KSKQ+A VLEA+ ERD+P+Y+ V+ + FV Sbjct: 120 ILVNGRRLNIASARIKDNDTVEVRAKSKQMALVLEAAASGERDIPDYLEVDSSALKGRFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L DVPYPV M+PNLV+EFYSR Sbjct: 180 RAPL-LADVPYPVQMEPNLVIEFYSR 204 >gi|300023627|ref|YP_003756238.1| ribosomal protein S4 [Hyphomicrobium denitrificans ATCC 51888] gi|299525448|gb|ADJ23917.1| ribosomal protein S4 [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 133/206 (64%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +KHKIDRR+GEN+WGRPKSP+N R PG HG+RR K S FG QL+AKQK+K Sbjct: 1 MTKRIRAKHKIDRRLGENIWGRPKSPLNRRESRPGQHGERRSGKLSDFGQQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ISE++FR+ + EA R +G TS LI LE RLD +VYRAKFVPT+FAARQFV+H H Sbjct: 61 YYGSISERQFRAAYDEASRLKGSTSELLIGLLERRLDALVYRAKFVPTVFAARQFVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V I SYR + GDVIEV +K+KQLA VLEA + AERDVP+Y++ +H+ M A Sbjct: 121 VTVNGKRVTIPSYRLRIGDVIEVTEKAKQLALVLEAIKSAERDVPDYVNADHNKMTAALT 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ L DVPYPV M+PNLVVEFYSR Sbjct: 181 RIPA-LSDVPYPVQMEPNLVVEFYSR 205 >gi|16080018|ref|NP_390844.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. 168] gi|221315235|ref|ZP_03597040.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320153|ref|ZP_03601447.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324434|ref|ZP_03605728.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312503|ref|YP_004204790.1| 30S ribosomal protein S4 [Bacillus subtilis BSn5] gi|133949|sp|P21466|RS4_BACSU RecName: Full=30S ribosomal protein S4; Short=BS4 gi|143467|gb|AAA22717.1| ribosomal protein S4 [Bacillus subtilis] gi|2293319|gb|AAC00397.1| ribosomal protein S4 [Bacillus subtilis] gi|2635450|emb|CAB14944.1| ribosomal protein S4 (BS4) [Bacillus subtilis subsp. subtilis str. 168] gi|291485397|dbj|BAI86472.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. natto BEST195] gi|320018777|gb|ADV93763.1| 30S ribosomal protein S4 [Bacillus subtilis BSn5] Length = 200 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L+SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY K G I V++KS+ L+ + E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYLVKPGQTIGVREKSRNLSIIKESVEV-NNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EINEALIVEFYSR 200 >gi|226313743|ref|YP_002773637.1| 30S ribosomal protein S4 [Brevibacillus brevis NBRC 100599] gi|254764572|sp|C0ZHK9|RS4_BREBN RecName: Full=30S ribosomal protein S4 gi|226096691|dbj|BAH45133.1| 30S ribosomal protein S4 [Brevibacillus brevis NBRC 100599] Length = 199 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +HK+ RR+G +L G K R++ PG HG + K S +G+QL+ KQK++ Sbjct: 1 MSRYTGPRHKLARRLGISLDGTGKDI--KRNFPPGQHGHNNRRKLSEYGIQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR F A + G N + LESRLD +VYR F PT AARQ VNH H Sbjct: 59 MFG-LNEKQFRRTFDNASKMAGVVGENFMKLLESRLDNLVYRMGFAPTRPAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG+ VNI SYR + GDVI +++KS+ L + +A + +P Y++ N TF Sbjct: 118 FLVNGKKVNIPSYRVQPGDVISIREKSRGLQLIKDALE-GRTFLPNYVTFNDAAAEGTFT 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 177 RLPDREE---MPAEINEVLIVEFYSR 199 >gi|323706478|ref|ZP_08118039.1| ribosomal protein S4 [Thermoanaerobacterium xylanolyticum LX-11] gi|323534198|gb|EGB23988.1| ribosomal protein S4 [Thermoanaerobacterium xylanolyticum LX-11] Length = 206 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 122/212 (57%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S K+ RR G L+ + K P R Y PG HGQ K K + +G QLR Sbjct: 1 MARYTESTCKLCRREGMKLFLKGDKCYTEKCPFARRPYAPGQHGQN-KKKLTNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++YYG + E++F F+EA+R +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKLRRYYG-VLERQFERYFEEAERMKGITGDNLLQLLERRLDNVVYRLSIASSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 FV+H H+LVNG+ V+I SY K GDV+ VK SK L + + A ++P+++ N D+ Sbjct: 119 FVSHGHILVNGKKVDIPSYLVKAGDVVSVKDSSKSLDVIKNNVE-ASTNIPDWLDFNRDS 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ + ++ +L+VE YSR Sbjct: 178 LEGKVLSLPTR---EHIDLPIEEHLIVELYSR 206 >gi|243180|gb|AAB21091.1| ribosomal protein S4 [Bacillus stearothermophilus, Peptide, 198 aa] Length = 198 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 119/205 (58%), Gaps = 7/205 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 ++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 ARYTGPMWKISRRLGISLSGTGKE-LQKRPYPPGQHGPGQR-KLSEYGLQLQEKQKLRHM 58 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++FR F+EA + G N + LESRLD +VYR T ARQ V H H+ Sbjct: 59 YG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHI 117 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVR 181 +V+G VNI SYR K G I V++KS+ L + EA + A +P+Y+S + + M T+ R Sbjct: 118 IVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNYIPDYLSFDPEKMEGTYTR 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + P + L+VEFYSR Sbjct: 177 LPERSE---LPAEINEALIVEFYSR 198 >gi|289579115|ref|YP_003477742.1| ribosomal protein S4 [Thermoanaerobacter italicus Ab9] gi|297545302|ref|YP_003677604.1| ribosomal protein S4 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528828|gb|ADD03180.1| ribosomal protein S4 [Thermoanaerobacter italicus Ab9] gi|296843077|gb|ADH61593.1| ribosomal protein S4 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 206 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 125/212 (58%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + K PV R Y PG HGQ RK K + +G+QLR Sbjct: 1 MGRYLGPSCRLCRREGMKLYLKGDKCYTDKCPVVRRGYAPGQHGQERK-KLTSYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+YYG + E++F +++A+R +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKLKRYYG-LLERQFERFYEKAERMKGITGENLLQLLERRLDNVVYRLGFAVSRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V+H H+ VNG+ V+I S+ K GDVI V++KS+ + + + A R+VP+++ +N D Sbjct: 119 LVSHGHIEVNGKKVDIPSFLVKPGDVISVREKSRSMELIKNNLEAA-RNVPDWLELNKDA 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + + P +Q +L+VE YS+ Sbjct: 178 FEGRVVSLP-RREHIDLP--IQEHLIVELYSK 206 >gi|47565070|ref|ZP_00236113.1| ribosomal protein S4 [Bacillus cereus G9241] gi|47557856|gb|EAL16181.1| ribosomal protein S4 [Bacillus cereus G9241] Length = 200 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K G I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPGQTISVREKSNNLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 RH---AERSELAAEINEALIVEFYSR 200 >gi|118626141|emb|CAL39368.1| small ribosomal protein 4 [Lophozia ventricosa var. silvicola] Length = 202 Score = 270 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKMKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|291280122|ref|YP_003496957.1| 30S ribosomal protein S4 [Deferribacter desulfuricans SSM1] gi|290754824|dbj|BAI81201.1| 30S ribosomal protein S4 [Deferribacter desulfuricans SSM1] Length = 208 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 92/213 (43%), Positives = 128/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGPVCKLCRREGMKLYLKGERCFKDKCAFEKKGYPPGQHGQMRK-KISDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E++FR F A R +G T NL+ LE RLD +VYR+ F + ARQ Sbjct: 60 KQKVKRIYG-VLERQFRRYFDRATRMQGITGENLLQLLERRLDNVVYRSGFARSRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 + H H LVNGR VNI S+ CKEGDV+EVK+KS+ +A++ E+ + AE R +PE+IS++ Sbjct: 119 LIRHNHFLVNGRKVNIPSFLCKEGDVVEVKEKSRDIAAIKESVETAEGRGLPEWISLDKT 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N AT R+P +Q +L+VE YS+ Sbjct: 179 NFKATVNRLPVR---SDINYDVQEHLIVELYSK 208 >gi|315303380|ref|ZP_07873992.1| ribosomal protein S4 [Listeria ivanovii FSL F6-596] gi|313628248|gb|EFR96769.1| ribosomal protein S4 [Listeria ivanovii FSL F6-596] Length = 200 Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ ++ VP+Y++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLDVSSF-VPDYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + + +VEFYSR Sbjct: 178 RIPERSE---LAAEINEAFIVEFYSR 200 >gi|296283999|ref|ZP_06861997.1| 30S ribosomal protein S4 [Citromicrobium bathyomarinum JL354] Length = 204 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 129/206 (62%), Positives = 159/206 (77%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRK K S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKGKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ ++EA R +GDT NLI LE RLD +VYRAKF PTIFAARQ VNH H Sbjct: 61 YYGDVTEKQFKRTYQEAARIKGDTGQNLIGLLEQRLDMVVYRAKFAPTIFAARQLVNHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R GDVI + K+K +A V+EA L ERD+P+Y++ + + V TF Sbjct: 121 ITVNGGKCNIPSRRVVVGDVIGLGAKAKDMALVIEAQSLPERDIPDYVAPDGTDKV-TFT 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNL+VEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLIVEFYSR 204 >gi|315225425|ref|ZP_07867239.1| 30S ribosomal protein S4 [Capnocytophaga ochracea F0287] gi|314944698|gb|EFS96733.1| 30S ribosomal protein S4 [Capnocytophaga ochracea F0287] Length = 201 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FERKNYPPGQHGLARRRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+F +++++A RS+ T L+ ESRLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L+ + E S A V E+I+ N + M TF Sbjct: 119 HITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVI-ENSLAAHSAVYEWITWNPEKMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + P ++ L+VE YS+ Sbjct: 178 VAVPQR---IQIPENIKEQLIVELYSK 201 >gi|170078686|ref|YP_001735324.1| 30S ribosomal protein S4 [Synechococcus sp. PCC 7002] gi|226695087|sp|B1XI84|RS4_SYNP2 RecName: Full=30S ribosomal protein S4 gi|169886355|gb|ACB00069.1| ribosomal protein S4 [Synechococcus sp. PCC 7002] Length = 202 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ +I RR+GE KS R Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MARYRGARLRITRRLGELPGLTRKSA--RREYPPGQHGQGRR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T ++ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRKARRTTGSTGQTILQLLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SY+C+ GDVI V+ + + + + ++P ++ + + Sbjct: 117 ILVNGRVVDIPSYQCRPGDVITVRDRDRSRKLIEANMEFPGLANIPSHLEFDKPTLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + LVVE+YSR Sbjct: 177 NGIIER---EWVALQINELLVVEYYSR 200 >gi|20808633|ref|NP_623804.1| 30S ribosomal protein S4 [Thermoanaerobacter tengcongensis MB4] gi|26399396|sp|Q8R7Y1|RS4_THETN RecName: Full=30S ribosomal protein S4 gi|20517267|gb|AAM25408.1| Ribosomal protein S4 and related proteins [Thermoanaerobacter tengcongensis MB4] Length = 206 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + K P+ R Y PG HGQ K K + +G+QLR Sbjct: 1 MGRYLGPSCRLCRREGIKLYLKGEKCYTDKCPLAKRGYAPGQHGQE-KKKLTQYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+YYG I E++F ++ A+R RG T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKLKRYYG-ILERQFVRYYERAERMRGITGENLLQLLERRLDNVVYRLGFAVSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V+H H+ VNG+ V+I SY K GDVI VK+ S+ + + ++ R+VP+++ +N D Sbjct: 119 LVSHGHIEVNGKKVDIPSYLVKPGDVISVKESSRSMELIKNNLEMG-RNVPDWLELNKDA 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + + PV Q +L+VE YS+ Sbjct: 178 FEGRVVSLP-RREHIDLPV--QEHLIVELYSK 206 >gi|163942386|ref|YP_001647270.1| 30S ribosomal protein S4 [Bacillus weihenstephanensis KBAB4] gi|229013860|ref|ZP_04170988.1| 30S ribosomal protein S4 [Bacillus mycoides DSM 2048] gi|229062341|ref|ZP_04199659.1| 30S ribosomal protein S4 [Bacillus cereus AH603] gi|229135493|ref|ZP_04264279.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST196] gi|229169382|ref|ZP_04297092.1| 30S ribosomal protein S4 [Bacillus cereus AH621] gi|226697804|sp|A9VKG5|RS4_BACWK RecName: Full=30S ribosomal protein S4 gi|163864583|gb|ABY45642.1| ribosomal protein S4 [Bacillus weihenstephanensis KBAB4] gi|228614145|gb|EEK71260.1| 30S ribosomal protein S4 [Bacillus cereus AH621] gi|228647958|gb|EEL04007.1| 30S ribosomal protein S4 [Bacillus cereus BDRD-ST196] gi|228716946|gb|EEL68630.1| 30S ribosomal protein S4 [Bacillus cereus AH603] gi|228747529|gb|EEL97404.1| 30S ribosomal protein S4 [Bacillus mycoides DSM 2048] Length = 200 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 ITVDGARVDIPSYRVKPNQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R + + L+VEFYSR Sbjct: 178 RH---AERSELAAEINEALIVEFYSR 200 >gi|262383848|ref|ZP_06076984.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_33B] gi|301312006|ref|ZP_07217928.1| ribosomal protein S4 [Bacteroides sp. 20_3] gi|262294746|gb|EEY82678.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_33B] gi|300830108|gb|EFK60756.1| ribosomal protein S4 [Bacteroides sp. 20_3] Length = 201 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNMVYRLGMAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V++KSK + + +A +I + +M + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSKYPWIEWDQSSMSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HLPERTD---IPENIKEQLIVELYSK 201 >gi|320451274|ref|YP_004203370.1| 30S ribosomal protein S4 [Thermus scotoductus SA-01] gi|320151443|gb|ADW22821.1| 30S ribosomal protein S4 [Thermus scotoductus SA-01] Length = 209 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 125/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + PK + R Y PG HGQ+R +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRTRRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG ISE +FR++F+EA R +G T + LESRLD +VYR F + ARQ Sbjct: 61 KQKLRRIYG-ISETQFRNLFEEASRKKGVTGTVFLGLLESRLDNVVYRLGFAASRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H+ VNGR V++ +YR K GD I + + S+ LA + E + + R V ++S++ + Sbjct: 120 MVRHGHITVNGRRVDLPAYRVKPGDEIAIAEGSRNLAFIRENLEAMKGRKVGPWLSLDVE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R+P +D+ PV LVVEFYSR Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVVEFYSR 209 >gi|118626149|emb|CAL39372.1| small ribosomal protein 4 [Lophozia longidens] Length = 202 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSMITKNLNLFQKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|116873025|ref|YP_849806.1| 30S ribosomal protein S4 [Listeria welshimeri serovar 6b str. SLCC5334] gi|289434877|ref|YP_003464749.1| ribosomal protein S4 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|123466377|sp|A0AJ45|RS4_LISW6 RecName: Full=30S ribosomal protein S4 gi|116741903|emb|CAK21027.1| 30S ribosomal protein S4 [Listeria welshimeri serovar 6b str. SLCC5334] gi|289171121|emb|CBH27663.1| ribosomal protein S4 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633056|gb|EFR99970.1| ribosomal protein S4 [Listeria seeligeri FSL N1-067] gi|313638010|gb|EFS03298.1| ribosomal protein S4 [Listeria seeligeri FSL S4-171] Length = 200 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ ++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLDVSSF-VPEYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP + + +VEFYSR Sbjct: 178 RIPERSE---LAAEINEAFIVEFYSR 200 >gi|256820007|ref|YP_003141286.1| 30S ribosomal protein S4 [Capnocytophaga ochracea DSM 7271] gi|256581590|gb|ACU92725.1| ribosomal protein S4 [Capnocytophaga ochracea DSM 7271] Length = 201 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FERKNYPPGQHGLARRRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+F +++++A RS+ T L+ ESRLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFHNLYEKAKRSKSITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L+ + E S A V E+I+ N + + TF Sbjct: 119 HITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVI-ENSLAAHSAVYEWITWNPEKLEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + P ++ L+VE YS+ Sbjct: 178 VAVPQR---IQIPENIKEQLIVELYSK 201 >gi|294084244|ref|YP_003551002.1| 30S ribosomal protein S4:RNA-binding S4:30S ribosomal protein S4, bacterial and organelle form [Candidatus Puniceispirillum marinum IMCC1322] gi|292663817|gb|ADE38918.1| Ribosomal protein S4:RNA-binding S4:Ribosomal protein S4, bacterial and organelle form [Candidatus Puniceispirillum marinum IMCC1322] Length = 208 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 126/204 (61%), Positives = 157/204 (76%), Gaps = 2/204 (0%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 KR S+KHKIDRR+G NLWGRPKSPVN R YGPG HGQRRK KP+ FG+QL AKQK+K YY Sbjct: 7 KRHSAKHKIDRRLGVNLWGRPKSPVNAREYGPGQHGQRRK-KPTDFGVQLMAKQKLKGYY 65 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G+I EK+F+ ++ A R +GDT NLI LE RLD I+YR+K VPT+FAARQ +NH H++ Sbjct: 66 GNIGEKQFKKYYQAAARGKGDTGQNLIGILECRLDAILYRSKMVPTVFAARQIINHGHIM 125 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRI 182 +NG+ NI S K GD I +K+K+K + +VL+A ERDVPEY+ VNHD A F+RI Sbjct: 126 LNGKRCNIASVMLKPGDEIALKEKAKTIPAVLDAIASVERDVPEYVDVNHDKFTAKFIRI 185 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P +L +VPYPV M+PNLVVE+YSR Sbjct: 186 P-TLDEVPYPVQMEPNLVVEYYSR 208 >gi|255014789|ref|ZP_05286915.1| 30S ribosomal protein S4 [Bacteroides sp. 2_1_7] gi|256841040|ref|ZP_05546547.1| ribosomal protein S4 [Parabacteroides sp. D13] gi|298375808|ref|ZP_06985764.1| ribosomal protein S4 [Bacteroides sp. 3_1_19] gi|256736883|gb|EEU50210.1| ribosomal protein S4 [Parabacteroides sp. D13] gi|298266845|gb|EFI08502.1| ribosomal protein S4 [Bacteroides sp. 3_1_19] Length = 201 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V++KSK + + +A +I + +M + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSKYPWIEWDQSSMSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HLPERAD---IPENIKEQLIVELYSK 201 >gi|118626013|emb|CAL39324.1| small ribosomal protein 4 [Diplophyllum albicans] Length = 202 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTFKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNNTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPNHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMVNR---EWVNLKINELLVVEYYSR 200 >gi|16800706|ref|NP_470974.1| 30S ribosomal protein S4 [Listeria innocua Clip11262] gi|226224197|ref|YP_002758304.1| ribosomal protein S4 [Listeria monocytogenes Clip81459] gi|26399441|sp|Q92BB2|RS4_LISIN RecName: Full=30S ribosomal protein S4 gi|259495285|sp|C1KVP3|RS4_LISMC RecName: Full=30S ribosomal protein S4 gi|16414125|emb|CAC96869.1| ribosomal protein S4 [Listeria innocua Clip11262] gi|225876659|emb|CAS05368.1| ribosomal protein S4 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|313618704|gb|EFR90630.1| ribosomal protein S4 [Listeria innocua FSL S4-378] Length = 200 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF-VPEYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSE---LAAEINEAFIVEFYSR 200 >gi|242242984|ref|ZP_04797429.1| 30S ribosomal protein S4 [Staphylococcus epidermidis W23144] gi|242233585|gb|EES35897.1| 30S ribosomal protein S4 [Staphylococcus epidermidis W23144] gi|319401032|gb|EFV89251.1| ribosomal protein S4 [Staphylococcus epidermidis FRI909] Length = 200 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + DN+ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQDLDIIKESVEI-NNFVPEYLDFDADNLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|144900824|emb|CAM77688.1| 30S ribosomal protein S4 [Magnetospirillum gryphiswaldense MSR-1] Length = 205 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 124/207 (59%), Positives = 152/207 (73%), Gaps = 3/207 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNT-RSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 M+KR +K KI+RR+G NLWGR KSP+ + PG HG RRK KPS FG QL AKQK+K Sbjct: 1 MTKRIEAKFKINRRLGVNLWGRGKSPLARGKETPPGQHGARRK-KPSDFGTQLMAKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+ISEK+FR ++ EA R RGDTS NLI LE RLD +VYR K + F ARQ +NH Sbjct: 60 GYYGNISEKQFRKLYDEAVRRRGDTSENLIGLLERRLDAVVYRMKMAVSPFQARQVINHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +NI SY+ K+GD+I VKQKSK LA +LEA+Q ERDVP+Y+ V+H M TF Sbjct: 120 HIHVNGKRLNIASYQVKDGDIITVKQKSKDLAIILEAAQSPERDVPDYLEVDHKEMKGTF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R P L DVPYP M+PNLV+EFYSR Sbjct: 180 IRAP-KLSDVPYPCQMEPNLVIEFYSR 205 >gi|118626163|emb|CAL39379.1| small ribosomal protein 4 [Tritomaria scitula] Length = 202 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNNTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|27468314|ref|NP_764951.1| 30S ribosomal protein S4 [Staphylococcus epidermidis ATCC 12228] gi|57867241|ref|YP_188856.1| 30S ribosomal protein S4 [Staphylococcus epidermidis RP62A] gi|251811109|ref|ZP_04825582.1| 30S ribosomal protein S4 [Staphylococcus epidermidis BCM-HMP0060] gi|282875859|ref|ZP_06284726.1| ribosomal protein S4 [Staphylococcus epidermidis SK135] gi|293366334|ref|ZP_06613014.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W2(grey)] gi|38258357|sp|Q8CS54|RS4_STAES RecName: Full=30S ribosomal protein S4 gi|81674196|sp|Q5HNI5|RS4_STAEQ RecName: Full=30S ribosomal protein S4 gi|27315860|gb|AAO04995.1|AE016748_229 30S ribosomal protein S4 [Staphylococcus epidermidis ATCC 12228] gi|57637899|gb|AAW54687.1| ribosomal protein S4 [Staphylococcus epidermidis RP62A] gi|251805329|gb|EES57986.1| 30S ribosomal protein S4 [Staphylococcus epidermidis BCM-HMP0060] gi|281294884|gb|EFA87411.1| ribosomal protein S4 [Staphylococcus epidermidis SK135] gi|291319572|gb|EFE59938.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W2(grey)] gi|329727885|gb|EGG64335.1| ribosomal protein S4 [Staphylococcus epidermidis VCU144] gi|329737374|gb|EGG73628.1| ribosomal protein S4 [Staphylococcus epidermidis VCU028] gi|329737515|gb|EGG73768.1| ribosomal protein S4 [Staphylococcus epidermidis VCU045] Length = 200 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + DN+ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLDIIKESVEI-NNFVPEYLDFDADNLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|172049036|sp|A6LEG6|RS4_PARD8 RecName: Full=30S ribosomal protein S4 Length = 201 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPRTRIARKFGEAIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +VYR PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVYRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V++KSK + + +A +I + +M + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVREKSKSMEVIADALSGFNHSQYPWIEWDQSSMSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HLPERAD---IPENIKEQLIVELYSK 201 >gi|319892767|ref|YP_004149642.1| SSU ribosomal protein S4p (S9e) [Staphylococcus pseudintermedius HKU10-03] gi|317162463|gb|ADV06006.1| SSU ribosomal protein S4p (S9e) [Staphylococcus pseudintermedius HKU10-03] gi|323464199|gb|ADX76352.1| ribosomal protein S4 [Staphylococcus pseudintermedius ED99] Length = 200 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K ++ R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSSWKKSRRLGISLSGTGKE-LDKRPYAPGQHGPTQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A + G N + L SRLD IVY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFQTAGKQGGVHGENFMILLASRLDAIVYALGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G+ V+I SY K G V+ V++KS++LA + E+ ++ VP+Y+ + DN+ TFV Sbjct: 119 VEVDGKRVDIPSYTLKPGQVVTVREKSRKLAIIEESVEI-NNFVPDYLDFDADNLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|85708538|ref|ZP_01039604.1| 30S ribosomal protein S4 [Erythrobacter sp. NAP1] gi|85690072|gb|EAQ30075.1| 30S ribosomal protein S4 [Erythrobacter sp. NAP1] Length = 204 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 132/206 (64%), Positives = 163/206 (79%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKSKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FRS +K+A R +GDT NLI LE RLD IVYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFRSTYKDATRMKGDTGQNLIGLLERRLDMIVYRAKFAPTIFAARQIVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S RC GDVI + K+K++A V+EA L ER++P+Y++ + ++ V F Sbjct: 121 IYVNGVKCNIASRRCDVGDVISLGNKAKEMALVIEAQSLPEREIPDYVAPDGNDKV-QFT 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLVVEFYSR 204 >gi|118627504|emb|CAL39386.1| small ribosomal protein 4 [Diplophyllum taxifolium] Length = 202 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTFKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I V+ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITVRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMVNR---EWVNLKINELLVVEYYSR 200 >gi|289550525|ref|YP_003471429.1| SSU ribosomal protein S4p (S9e) [Staphylococcus lugdunensis HKU09-01] gi|315658019|ref|ZP_07910892.1| 30S ribosomal protein S4 [Staphylococcus lugdunensis M23590] gi|289180057|gb|ADC87302.1| SSU ribosomal protein S4p (S9e) [Staphylococcus lugdunensis HKU09-01] gi|315496909|gb|EFU85231.1| 30S ribosomal protein S4 [Staphylococcus lugdunensis M23590] Length = 200 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +G+QLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGMQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFDIAAKQYGVHGENFMILLASRLDAVVYALGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+GR V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + DN+ TFV Sbjct: 119 IEVDGRRVDIPSYSLKPGQVITVREKSQNLDIIKESVEI-NNFVPEYLDFDADNLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|51894183|ref|YP_076874.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] gi|81691984|sp|Q67JX0|RS4A_SYMTH RecName: Full=30S ribosomal protein S4 A gi|51857872|dbj|BAD42030.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] Length = 207 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 122/212 (57%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K P+ R+ PG HG R+ KP+ + +QLR Sbjct: 1 MARYTGPVCRLCRREGVKLYLKGEKCYSDKCPIVKRATPPGQHGASRR-KPTEYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG + E++F F+ A R +G T L+ LE RLD +VYR F + ARQ Sbjct: 60 KQKARRYYG-VLERQFERYFEMASRKKGVTGEVLLQTLERRLDNVVYRMGFAASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H+ VNGR VNI SY +EGDV+ V++ S++ + E + A R VP ++SV+ + Sbjct: 119 IVKHSHIEVNGRKVNIPSYLVREGDVVAVRESSREHKRIKELAAAATRTVPAWLSVDPEA 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T +R+P+ + +Q L+VEFYSR Sbjct: 179 LRGTVLRLPNRDE---IDTPVQEQLIVEFYSR 207 >gi|47093459|ref|ZP_00231223.1| ribosomal protein S4 [Listeria monocytogenes str. 4b H7858] gi|47096809|ref|ZP_00234391.1| ribosomal protein S4 [Listeria monocytogenes str. 1/2a F6854] gi|217964250|ref|YP_002349928.1| ribosomal protein S4 [Listeria monocytogenes HCC23] gi|224499177|ref|ZP_03667526.1| 30S ribosomal protein S4 [Listeria monocytogenes Finland 1988] gi|224501464|ref|ZP_03669771.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL R2-561] gi|254824345|ref|ZP_05229346.1| ribosomal protein S4 [Listeria monocytogenes FSL J1-194] gi|254828169|ref|ZP_05232856.1| ribosomal protein S4 [Listeria monocytogenes FSL N3-165] gi|254831997|ref|ZP_05236652.1| 30S ribosomal protein S4 [Listeria monocytogenes 10403S] gi|254898237|ref|ZP_05258161.1| 30S ribosomal protein S4 [Listeria monocytogenes J0161] gi|254912270|ref|ZP_05262282.1| ribosomal protein S4 [Listeria monocytogenes J2818] gi|254931536|ref|ZP_05264895.1| ribosomal protein S4 [Listeria monocytogenes HPB2262] gi|254936597|ref|ZP_05268294.1| ribosomal protein S4 [Listeria monocytogenes F6900] gi|254993888|ref|ZP_05276078.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL J2-064] gi|255026363|ref|ZP_05298349.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL J2-003] gi|255522552|ref|ZP_05389789.1| 30S ribosomal protein S4 [Listeria monocytogenes FSL J1-175] gi|284801988|ref|YP_003413853.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5578] gi|284995130|ref|YP_003416898.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5923] gi|290893191|ref|ZP_06556178.1| ribosomal protein S4 [Listeria monocytogenes FSL J2-071] gi|300765979|ref|ZP_07075950.1| ribosomal protein S4 [Listeria monocytogenes FSL N1-017] gi|315282534|ref|ZP_07870925.1| ribosomal protein S4 [Listeria marthii FSL S4-120] gi|254764594|sp|B8DHE5|RS4_LISMH RecName: Full=30S ribosomal protein S4 gi|47014842|gb|EAL05793.1| ribosomal protein S4 [Listeria monocytogenes str. 1/2a F6854] gi|47018187|gb|EAL08956.1| ribosomal protein S4 [Listeria monocytogenes str. 4b H7858] gi|217333520|gb|ACK39314.1| ribosomal protein S4 [Listeria monocytogenes HCC23] gi|258600556|gb|EEW13881.1| ribosomal protein S4 [Listeria monocytogenes FSL N3-165] gi|258609194|gb|EEW21802.1| ribosomal protein S4 [Listeria monocytogenes F6900] gi|284057550|gb|ADB68491.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5578] gi|284060597|gb|ADB71536.1| 30S ribosomal protein S4 [Listeria monocytogenes 08-5923] gi|290557173|gb|EFD90700.1| ribosomal protein S4 [Listeria monocytogenes FSL J2-071] gi|293583091|gb|EFF95123.1| ribosomal protein S4 [Listeria monocytogenes HPB2262] gi|293590249|gb|EFF98583.1| ribosomal protein S4 [Listeria monocytogenes J2818] gi|293593579|gb|EFG01340.1| ribosomal protein S4 [Listeria monocytogenes FSL J1-194] gi|300513297|gb|EFK40373.1| ribosomal protein S4 [Listeria monocytogenes FSL N1-017] gi|307571182|emb|CAR84361.1| ribosomal protein S4 [Listeria monocytogenes L99] gi|313608550|gb|EFR84435.1| ribosomal protein S4 [Listeria monocytogenes FSL F2-208] gi|313613822|gb|EFR87575.1| ribosomal protein S4 [Listeria marthii FSL S4-120] gi|313623582|gb|EFR93757.1| ribosomal protein S4 [Listeria innocua FSL J1-023] gi|328464963|gb|EGF36242.1| 30S ribosomal protein S4 [Listeria monocytogenes 1816] gi|328474830|gb|EGF45634.1| 30S ribosomal protein S4 [Listeria monocytogenes 220] Length = 200 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF-VPEYVTFDAEKLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSE---LAAEINEAFIVEFYSR 200 >gi|118626115|emb|CAL39357.1| small ribosomal protein 4 [Mesoptychia sahlbergii] gi|118626159|emb|CAL39377.1| small ribosomal protein 4 [Leiocolea rutheana] gi|118627550|emb|CAL39408.1| small ribosomal protein 4 [Leiocolea collaris] Length = 202 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKALKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I V+ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|48527411|gb|AAT45838.1| small ribosomal protein 4 [Plagiochila retrospectans] Length = 202 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K +++ + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSAITKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|71083832|ref|YP_266552.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1062] gi|91763131|ref|ZP_01265095.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1002] gi|90101703|sp|Q4FLJ0|RS4_PELUB RecName: Full=30S ribosomal protein S4 gi|71062945|gb|AAZ21948.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1062] gi|91717544|gb|EAS84195.1| 30S ribosomal protein S4 [Candidatus Pelagibacter ubique HTCC1002] Length = 205 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 125/206 (60%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR S+KHKIDRR+ NLWGRPKSP N R YGPG HGQ RK KPS +G+QL+AKQK+K Sbjct: 1 MTKRISAKHKIDRRLKINLWGRPKSPFNKRDYGPGQHGQGRKGKPSDYGIQLQAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+E++FR+I+K+A +GDT NLI LE RLD++VYRA+F T+F+ARQ +NH H Sbjct: 61 YYGNINERQFRNIYKKATMLKGDTGENLIGLLERRLDSVVYRARFSTTVFSARQLINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSY KE D+IE++ KSKQLA + A ER+ PEYI+++ N TFV Sbjct: 121 VRVNGKKVNIGSYVVKEEDIIEIRDKSKQLAIIDIALASKERETPEYINLDEKNKKVTFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPYPVIM+PNLV+E+YSR Sbjct: 181 RTP-KFDEVPYPVIMEPNLVIEYYSR 205 >gi|213962933|ref|ZP_03391193.1| ribosomal protein S4 [Capnocytophaga sputigena Capno] gi|213954590|gb|EEB65912.1| ribosomal protein S4 [Capnocytophaga sputigena Capno] Length = 201 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FERKNYPPGQHGLARRRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+F +++++A RS+ T L+ ESRLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFHNLYEKAKRSKHITGEVLLQLCESRLDNVVYRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L+ + E S A V E+I+ N + + TF Sbjct: 119 HITVNGNIVNIPSYSLKPGDVVGVREKSKSLSVI-ENSLAAHSTVYEWITWNPEKLEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + P ++ L+VE YS+ Sbjct: 178 VAVPQR---IQIPENIKEQLIVELYSK 201 >gi|149371654|ref|ZP_01891070.1| 30S ribosomal protein S4 [unidentified eubacterium SCB49] gi|149355281|gb|EDM43841.1| 30S ribosomal protein S4 [unidentified eubacterium SCB49] Length = 201 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIYGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++FK+A + G T L+ ESRLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILEKQFRNLFKKATAAPGITGQVLLQLCESRLDNVVYRMGIAPSRPAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L ++ ++ + +V E+I+ N + TF Sbjct: 119 HITVNGEKVNIPSYQLKAGDVVAVREKSKSLEAIQDSLANSS-NVYEWITWNSETKQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P + +VE YS+ Sbjct: 178 VTIPQRLQ---IPENINEQFIVELYSK 201 >gi|154494405|ref|ZP_02033725.1| hypothetical protein PARMER_03760 [Parabacteroides merdae ATCC 43184] gi|154085849|gb|EDN84894.1| hypothetical protein PARMER_03760 [Parabacteroides merdae ATCC 43184] Length = 201 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGPDKV-LSKKNYPPGQHGNARKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LESRLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLESRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G VI V++KSK L + +A +I + ++ + Sbjct: 119 ITVDGKVVNIPSYSVKAGQVIGVREKSKSLEVIADALSGFNHSKYPWIEWDQSSLSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HLPERAD---IPENIKEQLIVELYSK 201 >gi|118627522|emb|CAL39395.1| small ribosomal protein 4 [Lophozia ciliata] Length = 202 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKIKIPSHLTFDLPQLKGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|46907827|ref|YP_014216.1| 30S ribosomal protein S4 [Listeria monocytogenes str. 4b F2365] gi|61215605|sp|Q71Z71|RS4_LISMF RecName: Full=30S ribosomal protein S4 gi|46881096|gb|AAT04393.1| ribosomal protein S4 [Listeria monocytogenes serotype 4b str. F2365] Length = 200 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + +G N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF-VPEYVTFDAETLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSER---AAEINEAFIVEFYSR 200 >gi|254468445|ref|ZP_05081851.1| ribosomal protein S4 [beta proteobacterium KB13] gi|207087255|gb|EDZ64538.1| ribosomal protein S4 [beta proteobacterium KB13] Length = 209 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K RR GE L+ + K + RSY PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCKQCRREGEKLFLKGEKCFTDKCGIEKRSYPPGQHGQRRGGRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++K YG I EK+FRS + EADR +G T NL+ LESRLD +VYR + +RQ Sbjct: 61 KQKLRKIYG-ILEKQFRSYYAEADRLKGVTGENLLQLLESRLDNVVYRMGIGVSRSESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H + VNG VNI SY+ K GD + V + SK + A++ A ER PE++ V+ Sbjct: 120 LVRHNSITVNGNRVNIPSYQVKPGDQVAVAEASKNQLRIKAATEAADERGFPEWVEVDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 KLSGTFKNKPQRDD---LPPTINESLIVELYSK 209 >gi|16803636|ref|NP_465121.1| 30S ribosomal protein S4 [Listeria monocytogenes EGD-e] gi|26399430|sp|Q8Y6T6|RS4_LISMO RecName: Full=30S ribosomal protein S4 gi|16411025|emb|CAC99674.1| ribosomal protein S4 [Listeria monocytogenes EGD-e] Length = 200 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + RG N + LE RLD IVYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFNKAGKLRGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +++ E+ +++ VPEY++ + + + + Sbjct: 119 ITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF-VPEYVTFDAEKLTGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSE---LAAEINEAFIVEFYSR 200 >gi|118626103|emb|CAL39353.1| small ribosomal protein 4 [Lophozia setosa] Length = 202 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMALTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSVITKNLNLFQKLKIPSHLTFDFTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|118625941|emb|CAL39292.1| small ribosomal protein 4 [Lophozia jamesonii] gi|118626113|emb|CAL39356.1| small ribosomal protein 4 [Lophozia stolonifera] Length = 202 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNRKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKSKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|228474508|ref|ZP_04059241.1| ribosomal protein S4 [Staphylococcus hominis SK119] gi|314936181|ref|ZP_07843528.1| ribosomal protein S4 [Staphylococcus hominis subsp. hominis C80] gi|228271537|gb|EEK12899.1| ribosomal protein S4 [Staphylococcus hominis SK119] gi|313654800|gb|EFS18545.1| ribosomal protein S4 [Staphylococcus hominis subsp. hominis C80] Length = 200 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFDIAGKQHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGKRVDIPSYALKPGQVISVREKSQNLDIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|194017389|ref|ZP_03056001.1| ribosomal protein S4 [Bacillus pumilus ATCC 7061] gi|194011257|gb|EDW20827.1| ribosomal protein S4 [Bacillus pumilus ATCC 7061] Length = 200 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +AD+ G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKADKLPGKQGENFMILLETRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I S+ K G I +++KS+ LA V E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSFSVKPGQTIALREKSQNLAVVKESVEV-NSFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EISEQLIVEFYSR 200 >gi|118626117|emb|CAL39358.1| small ribosomal protein 4 [Barbilophozia quadriloba var. glareosa] gi|118627546|emb|CAL39406.1| small ribosomal protein 4 [Barbilophozia quadriloba var. quadriloba] Length = 202 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNNTVDIPSYNCEPGDIITIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|297583620|ref|YP_003699400.1| 30S ribosomal protein S4 [Bacillus selenitireducens MLS10] gi|297142077|gb|ADH98834.1| ribosomal protein S4 [Bacillus selenitireducens MLS10] Length = 200 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K ++ R YGPG HG + K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LSKRPYGPGQHGPNSRRKVSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F+ A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFNTLFEAAGKLQGIHGENFMILLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G+ V+I SYR G I +++KS+ L V A ++ + +P Y+ + + + F Sbjct: 119 VTVDGKRVDIPSYRVAPGQSISLREKSRNLDVVKSAIEMNDF-LPSYLEFDAEKLEGKFA 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RYPERSE---LPAEINEQLIVEWYSR 200 >gi|317129954|ref|YP_004096236.1| ribosomal protein S4 [Bacillus cellulosilyticus DSM 2522] gi|315474902|gb|ADU31505.1| ribosomal protein S4 [Bacillus cellulosilyticus DSM 2522] Length = 200 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R YGPG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LQKRPYGPGEHGPNQRKKMSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR +F +A + +G N + LESRLD +VYR T ARQ VNH H Sbjct: 60 MYG-MNERQFRKLFDQAGKIQGIHGENFMILLESRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+G V+I SYR K G VI +++KS+ L +V A ++ + VP Y+ N D + TF Sbjct: 119 VTVDGGRVDIASYRVKPGQVIGLREKSRNLDAVKNAVEVNDF-VPAYLDFNADALEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSE---LPAEITEQLIVEFYSR 200 >gi|118627524|emb|CAL39396.1| small ribosomal protein 4 [Crossocalyx hellerianus] Length = 202 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I V+ K + + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITVRNKQESQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|327439214|dbj|BAK15579.1| ribosomal protein S4 [Solibacillus silvestris StLB046] Length = 200 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSGTGKE-IAKRPYAPGQHGPNSRGKKSEYGLQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ + A + +G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFKNTYLRAGKLQGVHGENFMILLETRLDNLVYRLGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY K G I +++KS L+ V E+ ++ VPEY+S + D+ V TFV Sbjct: 119 ILVDGNRVDIPSYSVKPGQTISLREKSANLSVVAESIEV-NSFVPEYLSFDADSKVGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSE---LSSEINEQFIVEFYSR 200 >gi|118625943|emb|CAL39293.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118625945|emb|CAL39294.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625951|emb|CAL39297.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625953|emb|CAL39298.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118625955|emb|CAL39299.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625977|emb|CAL39310.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118625979|emb|CAL39311.1| small ribosomal protein 4 [Anastrophyllum auritum] gi|118625983|emb|CAL39313.1| small ribosomal protein 4 [Anastrophyllum tubulosum] gi|118626001|emb|CAL41738.1| small ribosomal protein 4 [Anastrophyllum tubulosum] Length = 202 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|157693366|ref|YP_001487828.1| 30S ribosomal protein S4 [Bacillus pumilus SAFR-032] gi|172046056|sp|A8FGA1|RS4_BACP2 RecName: Full=30S ribosomal protein S4 gi|157682124|gb|ABV63268.1| ribosomal protein S4 [Bacillus pumilus SAFR-032] Length = 200 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LE+RLD +VYR T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAAKLPGKQGENFMILLETRLDNLVYRLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I S+ K G I +++KS+ LA V E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSFSVKPGQTIALREKSQNLAVVKESVEV-NSFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EISEQLIVEFYSR 200 >gi|314933871|ref|ZP_07841236.1| ribosomal protein S4 [Staphylococcus caprae C87] gi|313654021|gb|EFS17778.1| ribosomal protein S4 [Staphylococcus caprae C87] Length = 200 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A + G N + L SRLD +V+ T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFEIAGKQYGVHGENFMILLASRLDAVVFSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLNIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|221310909|ref|ZP_03592756.1| 30S ribosomal protein S4 [Bacillus subtilis subsp. subtilis str. 168] Length = 200 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSVTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L+SRLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY K G I V++KS+ L+ + E+ ++ VPEY++ + + + TF Sbjct: 119 ILVDGSRVDIPSYLVKPGQTIGVREKSRNLSIIKESVEV-NNFVPEYLTFDAEKLEGTFT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EINEALIVEFYSR 200 >gi|83648828|ref|YP_437263.1| ribosomal protein S4 [Hahella chejuensis KCTC 2396] gi|123530606|sp|Q2S936|RS4_HAHCH RecName: Full=30S ribosomal protein S4 gi|83636871|gb|ABC32838.1| ribosomal protein S4 [Hahella chejuensis KCTC 2396] Length = 206 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HGQRR + S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCNMET---APGQHGQRR-GRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARIKGATGENLLQLLERRLDNVVYRMGFGSTRSEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ +LVNG++VNI SY+ K GDV+ +++KSK + + +L A+R E+I V+ Sbjct: 116 QLVSHKAILVNGKAVNIPSYQVKPGDVVSIREKSKNQLRIKGSLELAAQRATLEWIEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +P P + NL+VE YS+ Sbjct: 176 AKMSGTFKSVPERTDLSP---DINENLIVELYSK 206 >gi|118627526|emb|CAL39397.1| small ribosomal protein 4 [Lophozia longiflora] Length = 202 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|70726207|ref|YP_253121.1| 30S ribosomal protein S4 [Staphylococcus haemolyticus JCSC1435] gi|82581621|sp|Q4L760|RS4_STAHJ RecName: Full=30S ribosomal protein S4 gi|68446931|dbj|BAE04515.1| 30S ribosomal protein S4 [Staphylococcus haemolyticus JCSC1435] Length = 200 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ V H H Sbjct: 60 LYG-MTERQFRNTFDIAGKQHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V V+GR V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 VEVDGRRVDIPSYSLKPGQVITVREKSQNLDIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|218262262|ref|ZP_03476785.1| hypothetical protein PRABACTJOHN_02459 [Parabacteroides johnsonii DSM 18315] gi|218223485|gb|EEC96135.1| hypothetical protein PRABACTJOHN_02459 [Parabacteroides johnsonii DSM 18315] Length = 201 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGPDKV-LSKKNYPPGQHGNARKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A RS+G T L+ LE RLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKASRSKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G VI V++KSK L + +A +I + ++ + Sbjct: 119 ITVDGKVVNIPSYSVKAGQVIGVREKSKSLEVIADALSGFNHSKYPWIEWDQSSLSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HLPERAD---IPENIKEQLIVELYSK 201 >gi|223043626|ref|ZP_03613671.1| ribosomal protein S4 [Staphylococcus capitis SK14] gi|222443114|gb|EEE49214.1| ribosomal protein S4 [Staphylococcus capitis SK14] Length = 200 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFEIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLNIIKESVEI-NNFVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|118627514|emb|CAL39391.1| small ribosomal protein 4 [Lophozia obtusa] Length = 202 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKXIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118627506|emb|CAL39387.1| small ribosomal protein 4 [Isopaches bicrenatus] Length = 202 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIKNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118626047|emb|CAL41748.1| small ribosomal protein 4 [Scapania obcordata] Length = 202 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN +V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + Sbjct: 117 ILVNNDTVDIPSYNCEPGDIITIKNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWINLKINELLVVEYYSR 200 >gi|229496321|ref|ZP_04390041.1| ribosomal protein S4 [Porphyromonas endodontalis ATCC 35406] gi|229316899|gb|EEN82812.1| ribosomal protein S4 [Porphyromonas endodontalis ATCC 35406] Length = 209 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR GE ++G K ++ ++Y PG HG+ R+ K S +G+QL KQK K Sbjct: 9 MARYTGPKSKVARRFGEPIFGPDKV-LSKKNYPPGQHGEGRRRKSSEYGIQLAEKQKAKY 67 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++FK A RS+G T L+ LE RLD IVYR PT AARQ V+HRH Sbjct: 68 TYG-VLERQFRNLFKAAQRSKGVTGEVLLQLLECRLDNIVYRLGIAPTRAAARQIVSHRH 126 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G +I V+++ K + + + +I ++ +M F+ Sbjct: 127 ITVDGNVVNIPSYSVKPGQIIAVRERDKSMEVIANSLAGFNHGKYSWIEWDNSSMSGKFL 186 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ L+VE YS+ Sbjct: 187 NIPQRAD---IPENIKEQLIVELYSK 209 >gi|15924709|ref|NP_372243.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu50] gi|15927296|ref|NP_374829.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus N315] gi|21283391|ref|NP_646479.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MW2] gi|49486544|ref|YP_043765.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57652018|ref|YP_186603.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus COL] gi|82751307|ref|YP_417048.1| 30S ribosomal protein S4 [Staphylococcus aureus RF122] gi|87159914|ref|YP_494360.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195529|ref|YP_500334.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268198|ref|YP_001247141.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus JH9] gi|150394266|ref|YP_001316941.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus JH1] gi|151221825|ref|YP_001332647.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980036|ref|YP_001442295.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu3] gi|161509934|ref|YP_001575593.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253315106|ref|ZP_04838319.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732369|ref|ZP_04866534.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006504|ref|ZP_05145105.2| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794103|ref|ZP_05643082.1| 30S ribosomal protein S4 [Staphylococcus aureus A9781] gi|258415807|ref|ZP_05682078.1| 30S ribosomal protein S4 [Staphylococcus aureus A9763] gi|258424134|ref|ZP_05687016.1| SSU ribosomal protein S4 [Staphylococcus aureus A9635] gi|258438286|ref|ZP_05689570.1| ribosomal protein S4 [Staphylococcus aureus A9299] gi|258443744|ref|ZP_05692083.1| ribosomal protein S4 [Staphylococcus aureus A8115] gi|258445955|ref|ZP_05694131.1| 30S ribosomal protein S4 [Staphylococcus aureus A6300] gi|258448365|ref|ZP_05696482.1| ribosomal protein S4 [Staphylococcus aureus A6224] gi|258450886|ref|ZP_05698939.1| 30S ribosomal protein S4 [Staphylococcus aureus A5948] gi|258454155|ref|ZP_05702126.1| SSU ribosomal protein S4P [Staphylococcus aureus A5937] gi|262049033|ref|ZP_06021911.1| 30S ribosomal protein S4 [Staphylococcus aureus D30] gi|262051784|ref|ZP_06024001.1| 30S ribosomal protein S4 [Staphylococcus aureus 930918-3] gi|269203358|ref|YP_003282627.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ED98] gi|282893214|ref|ZP_06301448.1| 30S ribosomal protein S4 [Staphylococcus aureus A8117] gi|282916980|ref|ZP_06324738.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus D139] gi|282924410|ref|ZP_06332083.1| 30S ribosomal protein S4 [Staphylococcus aureus A9765] gi|282927849|ref|ZP_06335460.1| 30S ribosomal protein S4 [Staphylococcus aureus A10102] gi|283770798|ref|ZP_06343690.1| small subunit ribosomal protein S4 [Staphylococcus aureus subsp. aureus H19] gi|284024766|ref|ZP_06379164.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 132] gi|294849881|ref|ZP_06790620.1| 30S ribosomal protein S4 [Staphylococcus aureus A9754] gi|295406030|ref|ZP_06815838.1| 30S ribosomal protein S4 [Staphylococcus aureus A8819] gi|296276442|ref|ZP_06858949.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MR1] gi|297207568|ref|ZP_06924003.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245044|ref|ZP_06928921.1| 30S ribosomal protein S4 [Staphylococcus aureus A8796] gi|300911649|ref|ZP_07129093.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH70] gi|304380688|ref|ZP_07363359.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039510|sp|P66563|RS4_STAAN RecName: Full=30S ribosomal protein S4 gi|54039511|sp|P66564|RS4_STAAW RecName: Full=30S ribosomal protein S4 gi|54041963|sp|P66562|RS4_STAAM RecName: Full=30S ribosomal protein S4 gi|56749380|sp|Q6G8K8|RS4_STAAS RecName: Full=30S ribosomal protein S4 gi|62287184|sp|Q5HF54|RS4_STAAC RecName: Full=30S ribosomal protein S4 gi|90101727|sp|Q2YTH0|RS4_STAAB RecName: Full=30S ribosomal protein S4 gi|122539301|sp|Q2FXK6|RS4_STAA8 RecName: Full=30S ribosomal protein S4 gi|123485448|sp|Q2FG18|RS4_STAA3 RecName: Full=30S ribosomal protein S4 gi|171769945|sp|A7X3F0|RS4_STAA1 RecName: Full=30S ribosomal protein S4 gi|172048947|sp|A6QHQ3|RS4_STAAE RecName: Full=30S ribosomal protein S4 gi|189045401|sp|A6U2I6|RS4_STAA2 RecName: Full=30S ribosomal protein S4 gi|189045402|sp|A5ITP2|RS4_STAA9 RecName: Full=30S ribosomal protein S4 gi|189045403|sp|A8Z2N6|RS4_STAAT RecName: Full=30S ribosomal protein S4 gi|13701514|dbj|BAB42808.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus N315] gi|14247491|dbj|BAB57881.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu50] gi|21204831|dbj|BAB95527.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MW2] gi|49244987|emb|CAG43448.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MSSA476] gi|57286204|gb|AAW38298.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus COL] gi|82656838|emb|CAI81267.1| 30S ribosomal protein S4 [Staphylococcus aureus RF122] gi|87125888|gb|ABD20402.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203087|gb|ABD30897.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741267|gb|ABQ49565.1| SSU ribosomal protein S4P [Staphylococcus aureus subsp. aureus JH9] gi|149946718|gb|ABR52654.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus JH1] gi|150374625|dbj|BAF67885.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. Newman] gi|156722171|dbj|BAF78588.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Mu3] gi|160368743|gb|ABX29714.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723891|gb|EES92620.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257788075|gb|EEV26415.1| 30S ribosomal protein S4 [Staphylococcus aureus A9781] gi|257839400|gb|EEV63873.1| 30S ribosomal protein S4 [Staphylococcus aureus A9763] gi|257845755|gb|EEV69787.1| SSU ribosomal protein S4 [Staphylococcus aureus A9635] gi|257848330|gb|EEV72321.1| ribosomal protein S4 [Staphylococcus aureus A9299] gi|257851150|gb|EEV75093.1| ribosomal protein S4 [Staphylococcus aureus A8115] gi|257855197|gb|EEV78136.1| 30S ribosomal protein S4 [Staphylococcus aureus A6300] gi|257858333|gb|EEV81218.1| ribosomal protein S4 [Staphylococcus aureus A6224] gi|257861422|gb|EEV84230.1| 30S ribosomal protein S4 [Staphylococcus aureus A5948] gi|257863607|gb|EEV86364.1| SSU ribosomal protein S4P [Staphylococcus aureus A5937] gi|259160278|gb|EEW45305.1| 30S ribosomal protein S4 [Staphylococcus aureus 930918-3] gi|259162850|gb|EEW47414.1| 30S ribosomal protein S4 [Staphylococcus aureus D30] gi|262075648|gb|ACY11621.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ED98] gi|269941198|emb|CBI49586.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TW20] gi|282319467|gb|EFB49819.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus D139] gi|282590359|gb|EFB95438.1| 30S ribosomal protein S4 [Staphylococcus aureus A10102] gi|282592911|gb|EFB97914.1| 30S ribosomal protein S4 [Staphylococcus aureus A9765] gi|282764532|gb|EFC04658.1| 30S ribosomal protein S4 [Staphylococcus aureus A8117] gi|283460945|gb|EFC08035.1| small subunit ribosomal protein S4 [Staphylococcus aureus subsp. aureus H19] gi|283470985|emb|CAQ50196.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus ST398] gi|285817402|gb|ADC37889.1| 30S ribosomal protein S4 [Staphylococcus aureus 04-02981] gi|294823220|gb|EFG39650.1| 30S ribosomal protein S4 [Staphylococcus aureus A9754] gi|294969027|gb|EFG45048.1| 30S ribosomal protein S4 [Staphylococcus aureus A8819] gi|296887585|gb|EFH26483.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178124|gb|EFH37372.1| 30S ribosomal protein S4 [Staphylococcus aureus A8796] gi|298694988|gb|ADI98210.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ED133] gi|300887070|gb|EFK82271.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH70] gi|302333384|gb|ADL23577.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus JKD6159] gi|304340795|gb|EFM06724.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830098|emb|CBX34940.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130645|gb|EFT86631.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus CGS03] gi|315197186|gb|EFU27525.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus CGS01] gi|320141663|gb|EFW33498.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA131] gi|320143817|gb|EFW35590.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA177] gi|323440736|gb|EGA98445.1| 30S ribosomal protein S4 [Staphylococcus aureus O11] gi|323442976|gb|EGB00598.1| 30S ribosomal protein S4 [Staphylococcus aureus O46] gi|329314393|gb|AEB88806.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus T0131] gi|329726987|gb|EGG63444.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus 21189] gi|329727555|gb|EGG64011.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus 21172] gi|329733129|gb|EGG69466.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus 21193] Length = 200 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|311069452|ref|YP_003974375.1| 30S ribosomal protein S4 [Bacillus atrophaeus 1942] gi|310869969|gb|ADP33444.1| 30S ribosomal protein S4 [Bacillus atrophaeus 1942] Length = 200 Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + L++RLD +VY+ T ARQ VNH H Sbjct: 60 MYG-VNERQFRTLFDKAAKLTGKHGENFMILLDARLDNLVYKLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G V+I SY+ K G I V++KS+ L+ V E+ ++ VPEY++ + + + + Sbjct: 119 ILVDGSRVDIPSYQVKPGQTIGVREKSRNLSIVKESVEV-NNFVPEYLTFDAEKLEGSLT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VEFYSR Sbjct: 178 RLPERSELAP---EINEALIVEFYSR 200 >gi|118626019|emb|CAL39327.1| small ribosomal protein 4 [Cryptochila paludosa] Length = 202 Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD I +K K K + + + + L ++ +P +++ + + Sbjct: 117 ISVNNGIVDIPSYNCEPGDTITIKNKQKSQSIITKNTNLFQKVKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|120437150|ref|YP_862836.1| 30S ribosomal protein S4 [Gramella forsetii KT0803] gi|152060951|sp|A0M574|RS4_GRAFK RecName: Full=30S ribosomal protein S4 gi|117579300|emb|CAL67769.1| 30S ribosomal protein S4 [Gramella forsetii KT0803] Length = 201 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F++A R++G T L+ ESRLD +VYR P+ AARQ V HR Sbjct: 60 YTYG-ILERQFRNMFEKATRAQGITGEVLLQLCESRLDNVVYRMGVAPSRRAARQLVGHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK LA V E+ V E+IS N + TF Sbjct: 119 HITVNGELVNIPSYHLKAGDVVGVREKSKSLAVVQESLS-NNSSVYEWISWNSEKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P V P + +VE YS+ Sbjct: 178 VAVPGR---VQIPENINEQFIVELYSK 201 >gi|46199603|ref|YP_005270.1| 30S ribosomal protein S4 [Thermus thermophilus HB27] gi|55981634|ref|YP_144931.1| 30S ribosomal protein S4 [Thermus thermophilus HB8] gi|7404455|sp|P80373|RS4_THET8 RecName: Full=30S ribosomal protein S4 gi|50401228|sp|P62664|RS4_THET2 RecName: Full=30S ribosomal protein S4 gi|10120567|pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution gi|13399795|pdb|1HNW|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Tetracycline gi|13399817|pdb|1HNX|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Pactamycin gi|13399839|pdb|1HNZ|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Hygromycin B gi|14278059|pdb|1IBK|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotic Paromomycin gi|14278080|pdb|1IBL|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With A Messenger Rna Fragment And Cognate Transfer Rna Anticodon Stem-Loop Bound At The A Site And With The Antibiotic Paromomycin gi|14278104|pdb|1IBM|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With A Messenger Rna Fragment And Cognate Transfer Rna Anticodon Stem-Loop Bound At The A Site gi|58177403|pdb|1XMO|D Chain D, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed With Aag-Mrna In The Decoding Center gi|58177426|pdb|1XMQ|D Chain D, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The Decoding Center gi|58177467|pdb|1XNQ|D Chain D, Structure Of An Inosine-Adenine Wobble Base Pair Complex In The Context Of The Decoding Center gi|58177490|pdb|1XNR|D Chain D, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair In The Context Of The Decoding Center gi|66361057|pdb|1YL4|G Chain G, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. 30s Subunit. The Coordinates For The 50s Subunit Are In The Pdb Entry 1yl3 gi|88192239|pdb|2B64|D Chain D, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. gi|88192302|pdb|2B9M|D Chain D, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400. gi|88192358|pdb|2B9O|D Chain D, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal Structure Of The Whole Ribosomal Complex With A Stop Codon In The A-Site. This File Contains The 30s Subunit, Trnas And Mrna From A Crystal Structure Of The Whole Ribosomal Complex With A Stop Codon In The A-Site And Is Described In Remark 400. gi|116667657|pdb|2HHH|D Chain D, Crystal Structure Of Kasugamycin Bound To The 30s Ribosomal Subunit gi|116668200|pdb|2J00|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, A-, P- And E-Site Trnas And Paromomycin For Molecule I. gi|116668261|pdb|2J02|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4) This File Contains The 30s Subunit, Mrna, A-, P- And E-Site Trnas And Paromomycin For Molecule Ii. gi|119389715|pdb|2HGI|G Chain G, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgj. gi|119389772|pdb|2HGP|G Chain G, Crystal Structure Of The 70s Thermus Thermophilus Ribosome With Translocated And Rotated Shine-Dalgarno Duplex. This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgq. gi|119389828|pdb|2HGR|G Chain G, 70s T.Th. Ribosome Functional Complex With Mrna And E- And P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgu. gi|149242711|pdb|2OW8|EE Chain e, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 2ow8, Contains The 30s Ribosome Subunit, Two Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1vsa. gi|149243621|pdb|2UU9|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Gug-Codon In The A-Site And Paromomycin. gi|149243648|pdb|2UUA|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Guc-Codon In The A-Site And Paromomycin. gi|149243675|pdb|2UUB|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Guu-Codon In The A-Site And Paromomycin. gi|149243702|pdb|2UUC|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Complexed With A Valine-Asl With Cmo5u In Position 34 Bound To An Mrna With A Gua-Codon In The A-Site And Paromomycin. gi|149243841|pdb|2UXC|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop In Complex With Its Cognate Mrna Ucgu In The Context Of The Thermus Thermophilus 30s Subunit. gi|157836411|pdb|2UXB|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop In Complex With Its Cognate Mrna Gggu In The Context Of The Thermus Thermophilus 30s Subunit. gi|157836488|pdb|2V46|D Chain D, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 1 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 1. gi|157836544|pdb|2V48|D Chain D, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 3 Of 4). This File Contains The 30s Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For Molecule 2. gi|158430903|pdb|2UXD|D Chain D, Crystal Structure Of An Extended Trna Anticodon Stem Loop In Complex With Its Cognate Mrna Cggg In The Context Of The Thermus Thermophilus 30s Subunit. gi|160285942|pdb|2QNH|EE Chain e, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 2qnh, Contains The 30s Ribosome Subunit, Two Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1vsp. gi|186972852|pdb|2VQE|D Chain D, Modified Uridines With C5-Methylene Substituents At The First Position Of The Trna Anticodon Stabilize U-G Wobble Pairing During Decoding gi|186972875|pdb|2VQF|D Chain D, Modified Uridines With C5-Methylene Substituents At The First Position Of The Trna Anticodon Stabilize U-G Wobble Pairing During Decoding gi|187609258|pdb|2ZKQ|DD Chain d, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map gi|209156499|pdb|3D5A|D Chain D, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|209156555|pdb|3D5C|D Chain D, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|211938822|pdb|2JL5|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 1 Of 4). This File Contains The 30s Subunit. gi|211938880|pdb|2JL7|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 3 Of 4). This File Contains The 30s Subunit. gi|218766776|pdb|3F1E|D Chain D, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766832|pdb|3F1G|D Chain D, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|226887377|pdb|2WDG|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule I. gi|226887402|pdb|2WDH|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A-Site Trna, Deacylated P-Site Trna, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule Ii. gi|226887491|pdb|2WDK|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule I. gi|226887548|pdb|2WDM|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Mrna, Paromomycin, Acylated A- And P-Site Trnas, And E-Site Trna. This File Contains The 30s Subunit A-,P-, And E-Site Trnas And Paromomycin For Molecule Ii. gi|237823532|pdb|2WH1|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|237823591|pdb|2WH3|D Chain D, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome). This File Contains The 30s Subunit. gi|260099989|pdb|3HUW|D Chain D, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For Molecule I. gi|260100045|pdb|3HUY|D Chain D, Structure Of Ef-P Bound To The 70s Ribosome; This File Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For Molecule Ii. gi|261824487|pdb|2WRI|D Chain D, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 1 Of 4). gi|261824549|pdb|2WRK|D Chain D, The Structure Of The Ribosome With Elongation Factor G Trapped In The Post-Translocational State (Part 3 Of 4). gi|261824611|pdb|2WRN|D Chain D, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). gi|261824670|pdb|2WRQ|D Chain D, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 3 Of 4). gi|281307170|pdb|3KIQ|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 1 Of 4) gi|281307228|pdb|3KIS|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Precleavage State; Part 3 Of 4) gi|281307286|pdb|3KIU|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 1 Of 4) gi|281307344|pdb|3KIX|DD Chain d, Structure Of Rele Nuclease Bound To The 70s Ribosome (Postcleavage State; Part 3 Of 4) gi|288965607|pdb|3KNH|D Chain D, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule I gi|289526685|pdb|3KNJ|D Chain D, The Structures Of Viomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule Ii' gi|289526710|pdb|3KNL|D Chain D, The Structures Of Capreomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule I gi|289526735|pdb|3KNN|D Chain D, The Structures Of Capreomycin Bound To The 70s Ribosome. This File Contains The 30s Subunit For Molecule Ii gi|294979507|pdb|3I8G|G Chain G, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f (50s). gi|294979532|pdb|3I8H|G Chain G, Elongation Complex Of The 70s Ribosome With Three Trnas And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g (30s). gi|294979591|pdb|3I9B|G Chain G, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B. The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule A In The S Asymmetric Unit Is Deposited As 3i9d (30s) And 3i9e (50s) gi|294979645|pdb|3I9D|G Chain G, Initiation Complex Of 70s Ribosome With Two Trnas And Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A. The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule B In The S Asymmetric Unit Is Deposited As 3i9b (30s) And 3i9c (50s) gi|295982078|pdb|2X9R|D Chain D, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|295982137|pdb|2X9T|D Chain D, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|307567965|pdb|2XFZ|D Chain D, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 1 Of 4) gi|307568023|pdb|2XG1|D Chain D, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The 70s Ribosome (Part 3 Of 4) gi|307776615|pdb|3OTO|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga Mutant Of Thermus Thermophilus (Hb8) gi|309320238|pdb|3OGE|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Chloramphenicol. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320259|pdb|3OGY|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Chloramphenicol. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320340|pdb|3OHC|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320361|pdb|3OHD|D Chain D, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320442|pdb|3OHY|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320493|pdb|3OI0|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Azithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320544|pdb|3OI2|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|309320595|pdb|3OI4|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Telithromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|312207676|pdb|2XQD|D Chain D, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s Ribosome With A Gtp Analog gi|313754002|pdb|2XSY|D Chain D, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) gi|313754117|pdb|2XUY|D Chain D, Trna Tranlocation On The 70s Ribosome: The Post- Translocational Translocation Intermediate Ti(Post) gi|325533405|pdb|2Y0U|D Chain D, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533464|pdb|2Y0W|D Chain D, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533523|pdb|2Y0Y|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533582|pdb|2Y10|D Chain D, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533641|pdb|2Y12|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome gi|325533700|pdb|2Y14|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533759|pdb|2Y16|D Chain D, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|325533818|pdb|2Y18|D Chain D, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A Cognate Codon On The 70s Ribosome. gi|4519422|dbj|BAA75548.1| ribosomal protein S4 [Thermus thermophilus] gi|46197229|gb|AAS81643.1| SSU ribosomal protein S4P [Thermus thermophilus HB27] gi|55773047|dbj|BAD71488.1| 30S ribosomal protein S4 [Thermus thermophilus HB8] Length = 209 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + PK + R Y PG HGQ+R +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ Sbjct: 61 KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S++ + Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R+P +D+ PV LV+EFYSR Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209 >gi|328951209|ref|YP_004368544.1| ribosomal protein S4 [Marinithermus hydrothermalis DSM 14884] gi|328451533|gb|AEB12434.1| ribosomal protein S4 [Marinithermus hydrothermalis DSM 14884] Length = 205 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + +I RR+G N+ K ++ R Y PG HGQRR +PS + ++LR KQK+ Sbjct: 1 MGRYRGPVVRIARRLGINIAETEKVQRYMDRRPYPPGQHGQRRSRRPSDYAVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++EK+FR++F+EA R +G T + LESRLD +V+R T ARQFV H Sbjct: 61 RYLYG-LNEKQFRNLFEEATRKKGVTGTVFLQLLESRLDNVVFRLGIATTRRQARQFVVH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVA 177 RH+LVNG+ V+ SYR K GDVI V ++SK+L E ++ A+ R +P ++ + + M Sbjct: 120 RHILVNGKRVDRPSYRVKPGDVISVAERSKKLVVFQENAEAAKRRKLPMWLEYDPETMTG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FVR+P + + + LV+E+YSR Sbjct: 180 KFVRLPERDE---LAIPVNEQLVIEYYSR 205 >gi|118627536|emb|CAL39401.1| small ribosomal protein 4 [Tetralophozia setiformis] Length = 202 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNINLFXKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|330814238|ref|YP_004358477.1| SSU ribosomal protein S4p (S9e) [Candidatus Pelagibacter sp. IMCC9063] gi|327487333|gb|AEA81738.1| SSU ribosomal protein S4p (S9e) [Candidatus Pelagibacter sp. IMCC9063] Length = 206 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 118/207 (57%), Positives = 162/207 (78%), Gaps = 2/207 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 M+KR +KHK+DRR+G NLWGRPKSP NTR++GPG HGQ R + KPS + +QL+AKQK+K Sbjct: 1 MTKRIQAKHKVDRRLGVNLWGRPKSPFNTRAFGPGQHGQTRARGKPSDYKIQLQAKQKLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YYG+++E++FR++F+EA+R RG+T NL+ LESRLD +VYRAKF T+F ARQ +NH Sbjct: 61 GYYGNLNERQFRNVFQEAERVRGNTGENLVGILESRLDAVVYRAKFALTVFQARQIINHG 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ VN+GSY KE D IEV+ SKQL ++L + ER+VPEY+ V+H + A + Sbjct: 121 HIKVNGKKVNVGSYSLKENDEIEVRDSSKQLTTILSSVASKEREVPEYVVVDHKQLTAKY 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++++PYP IM+PNLVVE+YSR Sbjct: 181 TRVP-KMEEIPYPAIMEPNLVVEYYSR 206 >gi|118625949|emb|CAL39296.1| small ribosomal protein 4 [Anastrophyllum auritum] Length = 202 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRXKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|48527361|gb|AAT45813.1| small ribosomal protein 4 [Plagiochila bicuspidata] Length = 202 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRXKIIRRLGTLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I +K K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIKNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|149184798|ref|ZP_01863116.1| 30S ribosomal protein S4 [Erythrobacter sp. SD-21] gi|148832118|gb|EDL50551.1| 30S ribosomal protein S4 [Erythrobacter sp. SD-21] Length = 204 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 126/206 (61%), Positives = 162/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR+S+K+K+DRR+GEN+WGRP SPVN RSYGPG HGQRRKSK S FGLQLRAKQK+K Sbjct: 1 MSKRKSAKYKLDRRMGENIWGRPNSPVNKRSYGPGQHGQRRKSKMSDFGLQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ +KEA +GDT NLI LE RLD +VYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFKRTYKEASAMKGDTGQNLIGLLEQRLDMVVYRAKFAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG NI S R + GDV+ + K+K++A V+EA L ER++P+Y++ + ++ V T+ Sbjct: 121 IFLNGVKTNIASARVRVGDVVSLGSKAKEMALVIEAQSLPEREIPDYVAPDGNDKV-TYN 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P L +VPYPV M+PNLVVEFYSR Sbjct: 180 RVP-KLDEVPYPVTMEPNLVVEFYSR 204 >gi|77019135|emb|CAH60174.1| chloroplast 30S ribosomal protein S4 [Funaria hygrometrica] Length = 198 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S Q K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGVLPGLTNKTPQLKSSSP----NQSAAKKISQYRIRLEEKQKLRFHYG 56 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLV Sbjct: 57 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLV 115 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I VK + K A + + +++ VP +++ + +I Sbjct: 116 NDCIVDIPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKAKVPNHLTFDSTQKKGLVNQI 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ---LDRESIGLKINELLVVEYYSR 196 >gi|48527351|gb|AAT45808.1| small ribosomal protein 4 [Plagiochila alternans] Length = 202 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K +++ + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSQSAITKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWIDLKINELLVVEYYSR 200 >gi|218294781|ref|ZP_03495635.1| RNA-binding S4 domain protein [Thermus aquaticus Y51MC23] gi|218244689|gb|EED11213.1| RNA-binding S4 domain protein [Thermus aquaticus Y51MC23] Length = 209 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + PK + R Y PG HGQRR +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQRRARRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG ISE +FR++F+EA R +G T L+ LESRLD +VYR F + ARQ Sbjct: 61 KQKLRRIYG-ISETQFRNLFEEASRKKGVTGTVLLGLLESRLDNVVYRLGFAQSRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H+ VNGR V++ +YR K GD I + ++S+ L + E + + R V ++S++ + Sbjct: 120 MVRHGHITVNGRRVDLPAYRVKPGDEIAIAERSRNLTFIRENLEAMKGRKVGPWLSLDVE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R+P +D+ PV LV+EFYSR Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209 >gi|118626107|emb|CAL41756.1| small ribosomal protein 4 [Anastrophyllum donnianum] Length = 202 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVELKINELLVVEYYSR 200 >gi|16331506|ref|NP_442234.1| 30S ribosomal protein S4 [Synechocystis sp. PCC 6803] gi|1350999|sp|P48939|RS4_SYNY3 RecName: Full=30S ribosomal protein S4 gi|1001162|dbj|BAA10304.1| 30S ribosomal protein S4 [Synechocystis sp. PCC 6803] Length = 202 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE KSP R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLSRKSP--RRAYPPGQHGQARR-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+EK+ K+A R+ G T L+ LE RLD V+R TI ARQ V H H Sbjct: 58 NYG-ITEKQLVRYVKKARRATGSTGQALLELLEMRLDNTVFRLGMAGTIPGARQLVCHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+ V+I SY+C+ GD++ V+ + + V + +VP ++ + + Sbjct: 117 ITVNGQVVDIPSYQCRPGDIVSVRDRDRSRKLVETNMEFPGLANVPSHLEFDKNTFTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LV+E+YSR Sbjct: 177 NSVIDR---EWVALQINELLVIEYYSR 200 >gi|118625981|emb|CAL39312.1| small ribosomal protein 4 [Syzygiella setulosa] Length = 202 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY CK GD I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISINNGIVDIPSYNCKPGDAITIRNKEKSQSIITQNTNLFQKVKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWVNLKINELLVVEYYSR 200 >gi|242374009|ref|ZP_04819583.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W1] gi|242348260|gb|EES39862.1| 30S ribosomal protein S4 [Staphylococcus epidermidis M23864:W1] Length = 200 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SY K G VI V++KS+ L + E+ ++ VPEY+ + D++ TFV Sbjct: 119 IEVDGGRVDIPSYSLKPGQVITVREKSQNLNIIKESVEI-NNYVPEYLDFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|225010541|ref|ZP_03701012.1| ribosomal protein S4 [Flavobacteria bacterium MS024-3C] gi|225005370|gb|EEG43321.1| ribosomal protein S4 [Flavobacteria bacterium MS024-3C] Length = 201 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI RR GE ++G KS R++ PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARRFGEAIFGEDKS-FEKRNFPPGQHGNNRRRGKESEYKVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR+IF +A+RS+G T L+ F ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILEKQFRNIFAKANRSKGVTGEVLLQFCESRLDNVVYRMGVSTSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L ++ +A ++ +V E+I+ N + M +F Sbjct: 119 HITVNGSIVNIPSYSLKAGDVVGVREKSKSLQTISDALSVSS-NVYEWITWNSEKMEGSF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VAVPERLQ---IPENIKEQLIVELYSK 201 >gi|253998040|ref|YP_003050103.1| 30S ribosomal protein S4 [Methylovorus sp. SIP3-4] gi|313200105|ref|YP_004038763.1| 30S ribosomal protein S4 [Methylovorus sp. MP688] gi|253984719|gb|ACT49576.1| ribosomal protein S4 [Methylovorus sp. SIP3-4] gi|312439421|gb|ADQ83527.1| ribosomal protein S4 [Methylovorus sp. MP688] Length = 209 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R++ PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FRS + EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 61 KQKVRRIYG-ILEGQFRSYYAEADRLKGITGENLLQLLECRLDNVAYRMGLGSSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNG+ VNI SY+ + GDV++V + SK + A + A +R PE++ V+ Sbjct: 120 IVRHNSILVNGKRVNIPSYQVRPGDVVQVAEASKSQLRIKGALEAAEQRGFPEWLEVDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P + P + +LVVE YS+ Sbjct: 180 ALKGTFKAKPQRDE---LPATINESLVVELYSK 209 >gi|118627544|emb|CAL39405.1| small ribosomal protein 4 [Lophozia perssonii] Length = 202 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCELGDIITIRNKQKSQSIITKNLNLFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|239996313|ref|ZP_04716837.1| 30S ribosomal protein S4 [Alteromonas macleodii ATCC 27126] gi|332142182|ref|YP_004427920.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Deep ecotype'] gi|226697796|sp|B4RT52|RS4_ALTMD RecName: Full=30S ribosomal protein S4 gi|327552204|gb|AEA98922.1| 30S ribosomal protein S4 [Alteromonas macleodii str. 'Deep ecotype'] Length = 206 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R+ + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARRGRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI S+ DV+ V++K+K+ A ++ A +LA +R+ P +I V+ Sbjct: 116 QLVSHKAIMVNGQVVNIPSFNVSAEDVVSVREKAKKQARIVAALELADQREKPTWIEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R+P + L+VE YS+ Sbjct: 176 SKMEGTFKRVPERTD---LSAEINEQLIVELYSK 206 >gi|118626153|emb|CAL39374.1| small ribosomal protein 4 [Saccobasis polita] gi|118627548|emb|CAL39407.1| small ribosomal protein 4 [Saccobasis polita] Length = 202 Score = 266 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIKNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118626139|emb|CAL39367.1| small ribosomal protein 4 [Tritomaria quinquedentata subsp. quinquedentata] gi|118626151|emb|CAL39373.1| small ribosomal protein 4 [Tritomaria quinquedentata subsp. turgida] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|86438886|emb|CAJ55411.1| small ribosomal protein 4 [Plagiochila dusenii] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLESKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCQPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|48527367|gb|AAT45816.1| small ribosomal protein 4 [Plagiochila deltoidea] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKALKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPNHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118626105|emb|CAL39354.1| small ribosomal protein 4 [Barbilophozia floerkei] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + V L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRSKQKSQSIVTRNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|118627532|emb|CAL39399.1| small ribosomal protein 4 [Lophozia ventricosa var. confusa] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLXINELLVVEYYSR 200 >gi|284049864|ref|ZP_06380074.1| 30S ribosomal protein S4 [Arthrospira platensis str. Paraca] gi|291571495|dbj|BAI93767.1| 30S ribosomal protein S4 [Arthrospira platensis NIES-39] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ K+ R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVARRLGDLPGLTRKTA--RRAYPPGQHGQARR-KRSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R+ G T L+ +LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LSERQLLRYVRKARRASGSTGQVLLQYLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+ V+I SY+C+ G++I V+ + K V Q +VP ++ ++ +N+ AT Sbjct: 117 ITVNGKVVDIASYQCRPGEIIGVRNRDKSREMVKANLQYPGLANVPSHLELDKNNLTATV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWVALSINELLVVEYYSR 200 >gi|253734496|ref|ZP_04868661.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH130] gi|253727550|gb|EES96279.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH130] Length = 200 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TF+ Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIIESVEI-NNFVPEYLNFDADSLTGTFI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|159027856|emb|CAO87069.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+ R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLTRKNA--RRAYAPGQHGQARK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VSEKQLVRYVRKARRATGSTGQVLLQLLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY+C+ GDVI V+ + + V + ++P ++ + + +V Sbjct: 117 VTVNGRVVDIASYQCRPGDVIGVRNQERSQDLVKRNMEYPGLANLPSHLEFDKNTLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NGV---VEREWIALSINELLVVEYYSR 200 >gi|118626043|emb|CAL41746.1| small ribosomal protein 4 [Lophozia ventricosa var. confertifolia] gi|118627540|emb|CAL39403.1| small ribosomal protein 4 [Lophozia ventricosa var. ventricosa] Length = 202 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118626097|emb|CAL39350.1| small ribosomal protein 4 [Jamesoniella colorata] Length = 202 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 YYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISINNGIVDIPSYNCEPGDTITIRNKQKSQSIITQNTNLFQKVKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWVNLKINELLVVEYYSR 200 >gi|225011671|ref|ZP_03702109.1| ribosomal protein S4 [Flavobacteria bacterium MS024-2A] gi|225004174|gb|EEG42146.1| ribosomal protein S4 [Flavobacteria bacterium MS024-2A] Length = 201 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEPIFGDDKS-FEKRNYPPGQHGNARRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F++A R++G T L+ ESRLD +VYR PT ARQ V+HR Sbjct: 60 FTYG-ILERQFRNLFEKASRNKGVTGEVLLQLCESRLDNVVYRLGLSPTRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ +NG +NI SY+ K GDV+ V++KSK L ++EA + + E++S N + + TF Sbjct: 119 HITINGSILNIPSYQVKVGDVVGVREKSKSLNVIIEA-KGKDASAYEWLSWNKEQLQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P ++ L+VE YS+ Sbjct: 178 VSIPERLQ---IPENIKEQLIVELYSK 201 >gi|118627528|emb|CAL39398.1| small ribosomal protein 4 [Schistochilopsis incisa] Length = 202 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNTIFRLGMALTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSVITKNLNLFQKLKIPNHLTFDFTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118595311|ref|ZP_01552658.1| 30S ribosomal protein S4 [Methylophilales bacterium HTCC2181] gi|118441089|gb|EAV47716.1| 30S ribosomal protein S4 [Methylophilales bacterium HTCC2181] Length = 209 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQRR S+ S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIEKRNYPPGQHGQRRASRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR + EADR +G T NL+ LESRLD +VY+ + +RQ Sbjct: 61 KQKLRRMYG-VLEKQFRGYYAEADRRKGITGENLLQLLESRLDNVVYKMGLGASRTESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNG+ VNI S++ GD + V + +K + A + A ER PE++ V+ Sbjct: 120 IVKHNAILVNGKRVNIPSFQVSPGDEVSVVESAKSQLRIKGAIEAAVERGFPEWLEVDSK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P P + +LVVE YS+ Sbjct: 180 AFKGVFKNKPQRDD---LPSTINESLVVELYSK 209 >gi|83591248|ref|YP_431257.1| 30S ribosomal protein S4 [Moorella thermoacetica ATCC 39073] gi|123725621|sp|Q2RFS5|RS4_MOOTA RecName: Full=30S ribosomal protein S4 gi|83574162|gb|ABC20714.1| SSU ribosomal protein S4P [Moorella thermoacetica ATCC 39073] Length = 208 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + S ++ RR G L+ + K V RSY PG HGQ RK K S +GLQLR Sbjct: 1 MARYKDSTCRLCRREGTKLFLKGDRCYSDKCAVARRSYPPGQHGQGRK-KVSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++FR+ F++A+R +G T NL+ LE RLD +VYR F + AR Sbjct: 60 KQKVRRIYG-ILERQFRNYFEKAERQKGVTGENLLILLERRLDNVVYRLGFADSRAEART 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 V H H LVNGR VNI SY + GD I V++KSK E A A R+VP ++ + Sbjct: 119 LVRHGHFLVNGRKVNIPSYLVRPGDTISVREKSKASPKFKEIAEAAAHRNVPAWLKADSS 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ Q +L+VE YSR Sbjct: 179 TLEGHVLALPTR---EQIDTPAQEHLIVELYSR 208 >gi|118625957|emb|CAL39300.1| small ribosomal protein 4 [Lethocolea glossophylla] gi|118625959|emb|CAL39301.1| small ribosomal protein 4 [Lethocolea glossophylla] Length = 202 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ +Y H K K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKAKSTYI--DHSTSNK-KVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ E RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-VTERQLLKYVRIARKAKGSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GDVI VK K K + +++ L ++ VP +++ + + Sbjct: 117 ISINNDIVDIPSYNCEPGDVITVKDKQKSQSIIIKNIDLFQKSKVPSHLTFDPTELRGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQTINRD---LINLKINELLVVEYYSR 200 >gi|118626157|emb|CAL39376.1| small ribosomal protein 4 [Barbilophozia attenuata] Length = 202 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ FLE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQFLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + V + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRSKQKSQSIVTKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|120553676|ref|YP_958027.1| ribosomal protein S4 [Marinobacter aquaeolei VT8] gi|152060959|sp|A1TYM1|RS4_MARAV RecName: Full=30S ribosomal protein S4 gi|120323525|gb|ABM17840.1| SSU ribosomal protein S4P [Marinobacter aquaeolei VT8] Length = 206 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HG R+ + S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIET---PPGMHG-ARRGRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARGKGATGENLLQLLEGRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNH 172 Q V+H+ VLVN + VNI SY+ K GDV+ V++K+K V A LA P ++ V+ Sbjct: 116 QLVSHKAVLVNDKPVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASSRAPVSWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M + +P + P + NL+VE YS+ Sbjct: 176 NKMSGVYKSVPERTE---LPADINENLIVELYSK 206 >gi|56552262|ref|YP_163101.1| 30S ribosomal protein S4 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761673|ref|ZP_04759760.1| RNA-binding S4 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260754038|ref|YP_003226931.1| 30S ribosomal protein S4 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|7388203|sp|Q9Z5U7|RS4_ZYMMO RecName: Full=30S ribosomal protein S4 gi|4378846|gb|AAD19714.1| 30S ribosomal protein S4 [Zymomonas mobilis subsp. mobilis ZM4] gi|56543836|gb|AAV89990.1| RNA-binding S4 domain protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241373981|gb|EER63514.1| RNA-binding S4 domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553401|gb|ACV76347.1| ribosomal protein S4 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 204 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 132/206 (64%), Positives = 161/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR SSK+KIDRR+GEN+WGRPKSPVN R YGPG HGQRR+SK S +GLQL+AKQK+K Sbjct: 1 MSKRHSSKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRRSKISDYGLQLKAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+FR + +A + +GDTS NLI LE RLD IVYRAKF PTIFAARQ V+H H Sbjct: 61 YYGDVTEKQFRRSYDDASKLKGDTSQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG NI S R GD I + K++++A VLEA LAERD+P+Y+ + + V TFV Sbjct: 121 IRVNGVKCNIASRRVNPGDEISLGSKAQEMALVLEAQSLAERDIPDYVLPDGNTKV-TFV 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP +L +VPYPV M+PNLVVEFYSR Sbjct: 180 RIP-TLDEVPYPVKMEPNLVVEFYSR 204 >gi|108802645|ref|YP_636301.1| ribosomal protein S4 [Eucalyptus globulus subsp. globulus] gi|309322451|ref|YP_003933964.1| ribosomal protein S4 [Eucalyptus grandis] gi|90101659|sp|Q49KZ6|RR4_EUCGG RecName: Full=30S ribosomal protein S4, chloroplastic gi|60460811|gb|AAX21031.1| ribosomal protein S4 [Eucalyptus globulus subsp. globulus] gi|308223285|gb|ADO23593.1| ribosomal protein S4 [Eucalyptus grandis] Length = 201 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I + K A + +VP++++++ Sbjct: 116 ILVNGCIVDIPSYRCKPRDIITARDDQKSRAMIQNYFDSSPHEEVPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|118626137|emb|CAL39366.1| small ribosomal protein 4 [Leiocolea heterocolpos] gi|118626143|emb|CAL39369.1| small ribosomal protein 4 [Leiocolea heterocolpos] gi|118626155|emb|CAL39375.1| small ribosomal protein 4 [Leiocolea heterocolpos] Length = 202 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKALKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I V+ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCESGDIITVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|118625993|emb|CAL39318.1| small ribosomal protein 4 [Lophocolea concreta] Length = 202 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI AARQ VNH H Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNYIVDIPSYNCEPGDIITIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|258420636|ref|ZP_05683575.1| SSU ribosomal protein S4 [Staphylococcus aureus A9719] gi|257843240|gb|EEV67650.1| SSU ribosomal protein S4 [Staphylococcus aureus A9719] Length = 200 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + P + L+VE+YSR Sbjct: 178 CLPERSE---LPAEINEQLIVEYYSR 200 >gi|10835588|pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin gi|13096397|pdb|1HR0|D Chain D, Crystal Structure Of Initiation Factor If1 Bound To The 30s Ribosomal Subunit gi|14278013|pdb|1GIX|G Chain G, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1gix, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|15826123|pdb|1JGO|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File, 1jgo, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|15826148|pdb|1JGP|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File, 1jgp, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|15826173|pdb|1JGQ|G Chain G, The Path Of Messenger Rna Through The Ribosome. This File, 1jgq, Contains The 30s Ribosome Subunit, Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy gi|28373702|pdb|1ML5|G Chain G, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 gi|110591326|pdb|2F4V|D Chain D, 30s Ribosome + Designer Antibiotic Length = 209 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 128/213 (60%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + PK + R Y PG HGQ+R +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ Sbjct: 61 KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S++ + Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R+P +D+ PV Q NLV+EFYSR Sbjct: 180 GMKGKFLRLPDR-EDLALPV--QENLVIEFYSR 209 >gi|118627500|emb|CAL39384.1| small ribosomal protein 4 [Lophocolea difformis] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|166365984|ref|YP_001658257.1| 30S ribosomal protein S4 [Microcystis aeruginosa NIES-843] gi|189045386|sp|B0JLP1|RS4_MICAN RecName: Full=30S ribosomal protein S4 gi|166088357|dbj|BAG03065.1| 30S ribosomal protein S4 [Microcystis aeruginosa NIES-843] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+ R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLTRKNA--RRAYAPGQHGQARK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRKARRATGSTGQVLLQLLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY+C+ GDVI V+ + + V + ++P ++ + + +V Sbjct: 117 VTVNGRVVDIASYQCRPGDVIGVRNQERSQDLVKRNMEYPGLANLPSHLEFDKNTLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NGV---VEREWIALSINELLVVEYYSR 200 >gi|118626071|emb|CAL39339.1| small ribosomal protein 4 [Anastrophyllum cavifolium] gi|118626167|emb|CAL39381.1| small ribosomal protein 4 [Barbilophozia atlantica] gi|118626169|emb|CAL39382.1| small ribosomal protein 4 [Barbilophozia atlantica] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ + K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNRHKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|322418390|ref|YP_004197613.1| 30S ribosomal protein S4 [Geobacter sp. M18] gi|320124777|gb|ADW12337.1| ribosomal protein S4 [Geobacter sp. M18] Length = 208 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + RSY PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGR-IKVSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFESADRMKGVTGENLLFLLERRLDNVVYRLGFATSRDEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR NI S + K GDVI++++KS+++A + E+ + + R +P+++ ++ D Sbjct: 119 LVRHSHFTLNGRKANIPSIQVKAGDVIQLREKSRKIAVITESLEAVVRRGIPQWLELDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P +D+ P +Q L+VE YS+ Sbjct: 179 AFKGTVKTSPVR-EDITMP--IQEQLIVELYSK 208 >gi|118627510|emb|CAL39389.1| small ribosomal protein 4 [Harpanthus flotovianus] gi|118627530|emb|CAL41760.1| small ribosomal protein 4 [Geocalyx graveolens] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G K+ SY + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKVIRRLGALPGLTSKTLKPKSSY---VDRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I VK K K + + + L ++ +P +++ N + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFNSIELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|325126867|ref|YP_004286104.1| ribosomal protein S4 [Fragaria vesca subsp. vesca] gi|324022779|gb|ADY15353.1| ribosomal protein S4 [Fragaria vesca subsp. vesca] Length = 201 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKP----RAGSDLRTQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I V+ + K A + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVRDEQKSKALIQNYLGSSPPEELPKHLTLDPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118626035|emb|CAL41744.1| small ribosomal protein 4 [Scapania hyperborea] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNRECINLKINELLVVEYYSR 200 >gi|118625963|emb|CAL39303.1| small ribosomal protein 4 [Syzygiella rubricaulis] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD +YR PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQILLQLLEMRLDNTIYRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY CK GD I +K K K + + + + L ++ +P +++ + + Sbjct: 117 ISINNSIVDIPSYNCKPGDTITIKNKEKSQSIITQNTNLFQKVKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWVNLKINELLVVEYYSR 200 >gi|48527413|gb|AAT45839.1| small ribosomal protein 4 [Plagiochila rutilans] Length = 202 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRIKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLNINELLVVEYYSR 200 >gi|302388739|ref|YP_003824560.1| SSU ribosomal protein S4P [Thermosediminibacter oceani DSM 16646] gi|302199367|gb|ADL06937.1| SSU ribosomal protein S4P [Thermosediminibacter oceani DSM 16646] Length = 208 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + PK ++ R Y PG HGQ K K S +GLQLR Sbjct: 1 MARYTGPVCRLCRREGMKLYLKGERCYTPKCAIDRRGYAPGQHGQM-KRKLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E++F+ F+EA R +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKAKRIYG-VLERQFKIYFEEAIRRKGVTGENLLRLLECRLDNVVYRLGFAKSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+ VNGR V I SY+ +E DVI V++KS+ L E ++ + R VPE++SVN+D Sbjct: 119 IVRHGHIEVNGRKVTIPSYQVREKDVIAVREKSRSLDFFKEMAEAGKGRIVPEWLSVNYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + VR+P+ V +Q +L+VE YS+ Sbjct: 179 TLTGEVVRMPNR---EDIDVPIQEHLIVELYSK 208 >gi|209524168|ref|ZP_03272718.1| ribosomal protein S4 [Arthrospira maxima CS-328] gi|209495259|gb|EDZ95564.1| ribosomal protein S4 [Arthrospira maxima CS-328] Length = 202 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ K+ R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVARRLGDLPGLTRKTA--RRAYPPGQHGQARR-KRSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R+ G T L+ +LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LSERQLLRYVRKARRASGSTGQVLLQYLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+ V+I SY+C+ G+ I V+ + K V Q +VP ++ ++ +N+ AT Sbjct: 117 ITVNGKVVDIASYQCRPGETIGVRNRDKSREMVKANLQYPGLANVPSHLELDKNNLTATV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWVALSINELLVVEYYSR 200 >gi|189219451|ref|YP_001940092.1| Ribosomal protein S4 [Methylacidiphilum infernorum V4] gi|189186309|gb|ACD83494.1| Ribosomal protein S4 [Methylacidiphilum infernorum V4] Length = 228 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 114/207 (55%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K KI RR L+G P + + Y PG+HGQR K S + + L KQK++ Sbjct: 27 MAKYIGPKTKISRRFNVALFG-PNKALERKPYPPGIHGQRAGKKKSDYAIALGEKQKLRF 85 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++F F A + +G T L+ LE RLD +VYR F + ARQ VNH H Sbjct: 86 MYG-ITERQFSRYFNIAHKKKGVTGEVLLQILEERLDNVVYRLCFATSRMEARQLVNHGH 144 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 + VNG+ VNI SYR K GDVIEV K + L + + +P+++++ DN+ Sbjct: 145 IYVNGKKVNIPSYRTKPGDVIEVCPKPQSRKLALRNLEAMKGVKIPDWLALEPDNLKGVV 204 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ + P + LVVEFYS+ Sbjct: 205 KRVPTRDEIQPI---VNEQLVVEFYSK 228 >gi|126666789|ref|ZP_01737766.1| ribosomal protein S4 [Marinobacter sp. ELB17] gi|126628834|gb|EAZ99454.1| ribosomal protein S4 [Marinobacter sp. ELB17] Length = 206 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 122/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HG R+ + S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDTKCNLET---PPGMHG-ARRGRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE+RLD + YR F T R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGVTGENLLQLLEARLDNVAYRMGFGSTRAECR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V+H+ +LVN + VNI SY+ K GDV+ V++K+K V A LA R ++ V+ Sbjct: 116 QLVSHKAILVNDKVVNIPSYQVKPGDVVSVREKAKNQLRVKGALDLASGRAAVSWVDVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + +P+ ++ P + NL+VE YS+ Sbjct: 176 TKMSGVYSSVPTRIE---LPADINENLIVELYSK 206 >gi|313680488|ref|YP_004058227.1| SSU ribosomal protein s4p [Oceanithermus profundus DSM 14977] gi|313153203|gb|ADR37054.1| SSU ribosomal protein S4P [Oceanithermus profundus DSM 14977] Length = 209 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + PK + R Y PG HGQRR +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGDRCYSPKCAIERRPYAPGQHGQRRARRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQKM++ YG ISEK+FR++F+EA + +G T + LESRLD +VYR + ARQ Sbjct: 61 KQKMRRIYG-ISEKQFRNLFEEASKKKGVTGTVFLRLLESRLDNVVYRLGIASSRKQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+ V GR V + SYR + GDVI V + K++ ++ ++ A+ R ++ + + Sbjct: 120 LVRHGHIAVGGRKVTVPSYRVRPGDVIAVTEAGKKIGAIQANAEAAKGRKTGPWLEFDPE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 MV F+R+P +D+ PV LV+E+YSR Sbjct: 180 KMVGKFLRLPER-EDLALPV--NEQLVIEYYSR 209 >gi|228472245|ref|ZP_04057011.1| ribosomal protein S4 [Capnocytophaga gingivalis ATCC 33624] gi|228276448|gb|EEK15172.1| ribosomal protein S4 [Capnocytophaga gingivalis ATCC 33624] Length = 201 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG R+++K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FAKKNYPPGQHGINRKRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F++++++A RS+G T L+ E+RLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFQNMYEKARRSKGVTGEVLLQLCEARLDNVVYRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD++ V+ KS+ L + E S + V E+I+ N + + TF Sbjct: 119 HITVNGEVVNIPSYSLKPGDIVGVRHKSQSLTVI-ENSLASNSSVYEWITWNPEKLEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + P ++ L+VE YS+ Sbjct: 178 VALPQR---IQIPENIKEQLIVELYSK 201 >gi|297618356|ref|YP_003703515.1| ribosomal protein S4 [Syntrophothermus lipocalidus DSM 12680] gi|297146193|gb|ADI02950.1| ribosomal protein S4 [Syntrophothermus lipocalidus DSM 12680] Length = 209 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 120/213 (56%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + K + + Y PG HG+ R+ KPS +G QLR Sbjct: 1 MGRYTGPACRLCRREGIKLYLKAERCYSEKCALERKPYIPGQHGRGRRGKPSEYGSQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR+ F++A+R G T NL++ LE RLD +VYR F + ARQ Sbjct: 61 KQKAKRIYG-ILERQFRNYFEKAERQPGITGENLLALLERRLDNVVYRLGFAGSRPEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHD 173 + H H L+NGR VNI S K GDVI+VK+KS + A E Q A + PE++ VN D Sbjct: 120 LITHGHFLLNGRKVNIPSILVKVGDVIQVKEKSMESAKFKELQAQAAYKTPPEWLEVNAD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + +P + + +L+VE YSR Sbjct: 180 NLSGRVLALPRRDQ---IDAPIDEHLIVELYSR 209 >gi|48527409|gb|AAT45837.1| small ribosomal protein 4 [Plagiochila retrorsa] Length = 202 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|253995743|ref|YP_003047807.1| 30S ribosomal protein S4 [Methylotenera mobilis JLW8] gi|253982422|gb|ACT47280.1| ribosomal protein S4 [Methylotenera mobilis JLW8] Length = 209 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R++ PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKAEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FRS + EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 61 KQKVRRIYG-VLEGQFRSYYAEADRQKGITGENLLQLLECRLDNVTYRMGLGGSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNG+ VNI SY+ K GDVI V + SK + A + A +R PE++ V+ Sbjct: 120 IVRHNSILVNGKRVNIPSYQVKAGDVISVAEASKTQLRIKGALEAAEQRGFPEWLDVDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P + P + +LVVE YS+ Sbjct: 180 ALKGTFKAKPQRDE---LPPTINESLVVELYSK 209 >gi|118627534|emb|CAL39400.1| small ribosomal protein 4 [Jungermannia exsertifolia] Length = 202 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I VK K K + + + L + +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCELGDIITVKNKQKSQSIITKNINLFQESKIPSHLTFDSTKLQGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKVNELLVVEYYSR 200 >gi|296936673|gb|ADH94345.1| ribosomal protein S4 [Syzygium cumini] Length = 201 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I + K + +VP++++++ Sbjct: 116 ILVNGCIVDIPSYRCKPRDIITARDDQKSRTMIQNYFDSSPHEEVPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|157689454|gb|ABV65283.1| ribosomal protein S4 [Cornus florida] Length = 201 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + + + ++P++++V+ Sbjct: 116 ILVNGRIVDIPSYRCKPQDIITARDEQKSRALIQNSLESSPHEELPKHLTVHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|218131301|ref|ZP_03460105.1| hypothetical protein BACEGG_02912 [Bacteroides eggerthii DSM 20697] gi|317476331|ref|ZP_07935580.1| ribosomal protein S4 [Bacteroides eggerthii 1_2_48FAA] gi|217986518|gb|EEC52854.1| hypothetical protein BACEGG_02912 [Bacteroides eggerthii DSM 20697] gi|316907357|gb|EFV29062.1| ribosomal protein S4 [Bacteroides eggerthii 1_2_48FAA] Length = 201 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNAKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|83592040|ref|YP_425792.1| 30S ribosomal protein S4 [Rhodospirillum rubrum ATCC 11170] gi|90101712|sp|Q2RWJ0|RS4_RHORT RecName: Full=30S ribosomal protein S4 gi|83574954|gb|ABC21505.1| SSU ribosomal protein S4P [Rhodospirillum rubrum ATCC 11170] Length = 204 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M KR +SKHKIDRR+G NLWGRPKSP+N R YGPG HGQRR+ KPS FG+QL AKQK+K Sbjct: 1 MGKRLNSKHKIDRRLGVNLWGRPKSPINKREYGPGEHGQRRR-KPSDFGIQLMAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISEK FR ++EA RGDTS NLIS LE+RLD +VYR K VPT+F++RQ +NH H Sbjct: 60 YYGNISEKAFRKYYEEASSRRGDTSENLISILETRLDAVVYRMKIVPTVFSSRQIINHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNGR V++ SYR +EGDVIEVK+KS+Q+ +LEA Q ERD+PEYI+++ + TF+ Sbjct: 120 ILVNGRRVSVASYRVQEGDVIEVKEKSRQMPLILEALQSHERDIPEYITMDLAHAKGTFL 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P L+DVPYPV M+PNLVVEFYSR Sbjct: 180 RAP-KLEDVPYPVQMEPNLVVEFYSR 204 >gi|118626079|emb|CAL39343.1| small ribosomal protein 4 [Delavayella serrata] Length = 202 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKVLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I VK K K + + + L ++ +P ++ + N+ + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITVKNKQKSQSIITKNINLFQKSKIPSHLIFDSTNLSGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINRESINLKINELLVVEYYSR 200 >gi|11465958|ref|NP_054500.1| ribosomal protein S4 [Nicotiana tabacum] gi|78102536|ref|YP_358677.1| ribosomal protein S4 [Nicotiana sylvestris] gi|133960|sp|P06359|RR4_TOBAC RecName: Full=30S ribosomal protein S4, chloroplastic gi|90101663|sp|Q3C1H5|RR4_NICSY RecName: Full=30S ribosomal protein S4, chloroplastic gi|11834|emb|CAA77354.1| ribosomal protein S4 [Nicotiana tabacum] gi|77799563|dbj|BAE46652.1| ribosomal protein S4 [Nicotiana sylvestris] gi|225202|prf||1211235AG ribosomal protein S4 Length = 201 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P N G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKPRN----GSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118626041|emb|CAL39332.1| small ribosomal protein 4 [Scapania undulata] Length = 202 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I + K K + + + L ++ +P +++ + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIGNKQKSQSIITKNLNLFQKLKIPSHLTFDLAQLQGYV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWINLKINELLVVEYYSR 200 >gi|118625969|emb|CAL39306.1| small ribosomal protein 4 [Syzygiella rubricaulis] Length = 202 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY CK GD I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISINNGIVDIPSYNCKPGDTITIRNKEKSQSIITQNTNLLQKVKIPSHLTFDLTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWVNLKINELLVVEYYSR 200 >gi|299822736|ref|ZP_07054622.1| 30S ribosomal protein S4 [Listeria grayi DSM 20601] gi|299816265|gb|EFI83503.1| 30S ribosomal protein S4 [Listeria grayi DSM 20601] Length = 200 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQ KQK++ Sbjct: 1 MARYTGPSWKVSRRLGISLSGTGKE-LERRPYAPGQHGPNQRKKLSEYGLQQAEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F++ F +A + G N + LE RLD +VYR T AARQ VNH H Sbjct: 60 MYG-LTERQFKNTFDKAGKLPGKQGENFMILLEQRLDNVVYRFGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY+ G VI V++KS + +S+ E+ ++ VPEY++ + + + + Sbjct: 119 IQVDGKRVDIPSYQVSVGQVITVREKSAKNSSIAESLDVSNF-VPEYVTFDAEKLEGSLN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERSE---LAAEINEAFIVEFYSR 200 >gi|118626111|emb|CAL39355.1| small ribosomal protein 4 [Gymnocolea inflata] Length = 202 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G + K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGASPGLTSKTLKLKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNGQKSQSIITKNINLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 DQMVNR---EWVNLKINELLVVEYYSR 200 >gi|295135677|ref|YP_003586353.1| 30S ribosomal protein S4 [Zunongwangia profunda SM-A87] gi|294983692|gb|ADF54157.1| 30S ribosomal protein S4 [Zunongwangia profunda SM-A87] Length = 201 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F++A RS+G T L+ ESRLD +V+R P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFRNMFEKATRSQGITGEVLLQLCESRLDNVVFRLGVAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L V ++ +V E+I+ N++ TF Sbjct: 119 HITVNGELVNIPSYQLKAGDVVGVREKSKSLQVVQDSLA-NNSNVYEWITWNNETKQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P V P + +VE YS+ Sbjct: 178 VSVPGR---VQIPENINEQFIVELYSK 201 >gi|167764347|ref|ZP_02436472.1| hypothetical protein BACSTE_02731 [Bacteroides stercoris ATCC 43183] gi|167697752|gb|EDS14331.1| hypothetical protein BACSTE_02731 [Bacteroides stercoris ATCC 43183] Length = 201 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNAKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +L+VE YS+ Sbjct: 179 HVPERAD---IPENIKEHLIVELYSK 201 >gi|221142354|ref|ZP_03566847.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751546|gb|ADL65723.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 200 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHSH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|153012223|ref|YP_001381738.1| ribosomal protein S4 [Medicago truncatula] Length = 201 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKGP----TVGSELKNQSRSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K + K + + + A R +P +++++ Sbjct: 116 VLVNGRIVDIPSYRCKPEDIITAKDEQKSRTLIQNSLESAPREKLPIHLTLDPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|86141165|ref|ZP_01059711.1| 30S ribosomal protein S4 [Leeuwenhoekiella blandensis MED217] gi|85831724|gb|EAQ50179.1| 30S ribosomal protein S4 [Leeuwenhoekiella blandensis MED217] Length = 201 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL+ KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E +FR++F++A + G T L+ ESRLD +V+R P+ AARQ V+HR Sbjct: 60 YTYG-ILENQFRNMFEKATSATGITGVVLLQLCESRLDNVVFRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L+++ ++ A V E+IS N+D+ TF Sbjct: 119 HITVNGELVNIPSYQLKAGDVVAVREKSKSLSAIQDSLANASH-VYEWISWNNDSKQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + P + +VE YS+ Sbjct: 178 VSVPER---IQIPENINEQFIVELYSK 201 >gi|118625975|emb|CAL39309.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626005|emb|CAL39320.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626121|emb|CAL39360.1| small ribosomal protein 4 [Anastrophyllum minutum] Length = 202 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDISSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|41323125|gb|AAR99792.1| small ribosomal protein 4 [Plagiochila subplana] Length = 202 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD + R PTI ARQ VNH H Sbjct: 58 HYG-LTEQQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GDVI V K K + V + ++ +P +++ N + + Sbjct: 117 ISINNDIVDIPSYNCEPGDVITVGNKQKSQSIVTKNINSFQKLKIPSHLTFNLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWIDLKINELLVVEYYSR 200 >gi|34499616|ref|NP_903831.1| 30S ribosomal protein S4 [Chromobacterium violaceum ATCC 12472] gi|41017823|sp|Q7NQH6|RS4_CHRVO RecName: Full=30S ribosomal protein S4 gi|34105467|gb|AAQ61822.1| 30S ribosomal protein S4 [Chromobacterium violaceum ATCC 12472] Length = 206 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRALDSKCKLDAAPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ F EA R +G T NL+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRNYFAEAVRRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI SY+ K GDV+ V++K+K+ A ++E LAE+ P ++SV+ M Sbjct: 119 SHKAIVVNGQVVNIPSYQVKAGDVVSVREKAKKQARIVEGLALAEQGGFPSWVSVDSKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + + LVVEFYS+ Sbjct: 179 EGTFKSAPERSE---LSSDINEQLVVEFYSK 206 >gi|297537555|ref|YP_003673324.1| 30S ribosomal protein S4 [Methylotenera sp. 301] gi|297256902|gb|ADI28747.1| ribosomal protein S4 [Methylotenera sp. 301] Length = 209 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 118/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R++ PG HGQRR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKAEKCFTDKCAIEKRNFPPGQHGQRRNQRLSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FRS + EADR +G T NL+ LE RLD + YR + ARQ Sbjct: 61 KQKVRRIYG-VLEAQFRSYYAEADRQKGITGENLLQLLECRLDNVTYRMGLGGSRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNGR VNI SY+ K GDV+ V + SK + A + A +R P +I V+ Sbjct: 120 IVRHNSILVNGRRVNIPSYQVKAGDVVSVAESSKTQLRIKGALEAAEQRGFPAWIEVDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P + P + +LVVE YS+ Sbjct: 180 ALKGTFKAKPQRDE---LPPTINESLVVELYSK 209 >gi|41323135|gb|AAR99797.1| small ribosomal protein 4 [Plagiochila stricta] Length = 202 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I +K K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIKNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|28261719|ref|NP_783234.1| ribosomal protein S4 [Atropa belladonna] gi|26399142|sp|Q8S8X2|RR4_ATRBE RecName: Full=30S ribosomal protein S4, chloroplastic gi|20068333|emb|CAC88046.1| ribosomal protein S4 [Atropa belladonna] Length = 201 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKP----RTGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|330684381|gb|EGG96107.1| ribosomal protein S4 [Staphylococcus epidermidis VCU121] Length = 200 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAAKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+GR V+I SY K G I V++KS++L + E+ ++ VPEY++ + D++ TFV Sbjct: 119 IEVDGRRVDIPSYSLKPGQEIAVREKSQKLNIITESVEI-NNFVPEYLNFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|118626029|emb|CAL39330.1| small ribosomal protein 4 [Scapania lingulata] Length = 202 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLRQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWINLKINELLVVEYYSR 200 >gi|290487060|gb|ADD29914.1| ribosomal protein S4 [Antirrhinum majus] Length = 201 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + + +VP Y++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRTLIQNSLNSSPHEEVPNYLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|41323115|gb|AAR99787.1| small ribosomal protein 4 [Plagiochila frondescens] Length = 202 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---ERSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMCIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSQSVVTKNINSFQKLKIPSHLTFDSTQLPGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118626123|emb|CAL41758.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626127|emb|CAL39361.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626129|emb|CAL39362.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626131|emb|CAL39363.1| small ribosomal protein 4 [Anastrophyllum minutum] gi|118626133|emb|CAL39364.1| small ribosomal protein 4 [Anastrophyllum minutum var. weberi] Length = 202 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDISSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118579144|ref|YP_900394.1| 30S ribosomal protein S4 [Pelobacter propionicus DSM 2379] gi|152112242|sp|A1ALW6|RS4_PELPD RecName: Full=30S ribosomal protein S4 gi|118501854|gb|ABK98336.1| SSU ribosomal protein S4P [Pelobacter propionicus DSM 2379] Length = 208 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R +K S +G+QLR Sbjct: 1 MARYTGPSCRLCRRENMELFLKGDRCYTDKCAIKRRNYPPGQHGQGR-TKNSAYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR F EADR +G T NL+S LE RLD +VYR F + +RQ Sbjct: 60 KQKVRRIYG-LMENQFRGYFAEADRMKGVTGENLLSLLERRLDNVVYRLGFASSRSESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG+ V+I S + + GDVIE+++KS+++ S+ +A +A R +P+++ ++ D Sbjct: 119 LVRHGHFTLNGKKVDIPSIQTRVGDVIELREKSRKIVSINDALDAVARRGIPQWLELDRD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +DV P +Q LVVE YS+ Sbjct: 179 AFKGNLKALPVR-EDVTTP--IQEQLVVELYSK 208 >gi|41323089|gb|AAR99774.1| small ribosomal protein 4 [Plagiochila bifaria] Length = 202 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYSCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118625937|emb|CAL39290.1| small ribosomal protein 4 [Schistochilopsis incisa] Length = 202 Score = 264 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAVTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P ++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSVITKNLNLFQKLKIPSHLIFDFTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|172058242|ref|YP_001814702.1| ribosomal protein S4 [Exiguobacterium sibiricum 255-15] gi|226699065|sp|B1YKD2|RS4_EXIS2 RecName: Full=30S ribosomal protein S4 gi|171990763|gb|ACB61685.1| ribosomal protein S4 [Exiguobacterium sibiricum 255-15] Length = 199 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L K + R Y PG HG R+ K S +GLQL+AKQ ++ Sbjct: 1 MARYTGPAWKLSRRLGISLTETGKE-IAKRPYAPGQHGNSRR-KMSEYGLQLQAKQTLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F IF +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 59 MYG-VNERQFNRIFNDAGKMPGIHGENFMFLLEARLDNVVYRMGMARTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I S+R K G I V++KSK + EA ++A ++++ + + + TFV Sbjct: 118 IQVDGARVDIPSFRVKPGQTISVREKSKNFVVIKEALEVAPATK-DFVTFDAEKLEGTFV 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + +Q LVVE+YSR Sbjct: 177 RLPERSE---LNDQIQEQLVVEYYSR 199 >gi|81301567|ref|YP_398864.1| ribosomal protein S4 [Nicotiana tomentosiformis] gi|90101664|sp|Q33C33|RR4_NICTO RecName: Full=30S ribosomal protein S4, chloroplastic gi|80750926|dbj|BAE48002.1| ribosomal protein S4 [Nicotiana tomentosiformis] Length = 201 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSKALIQISLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|202958458|dbj|BAG71117.1| ribosomal protein S4 [Petunia integrifolia] gi|202958473|dbj|BAG71118.1| ribosomal protein S4 [Petunia integrifolia subsp. inflata] gi|202958481|dbj|BAG71119.1| ribosomal protein S4 [Petunia integrifolia subsp. inflata] Length = 201 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDEQKSRALIQISLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118627516|emb|CAL39392.1| small ribosomal protein 4 [Anastrophyllum saxicola] Length = 202 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNNTVDISSYNCEPGDIITIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|169632374|ref|YP_001706110.1| 30S ribosomal protein S4 [Acinetobacter baumannii SDF] gi|169794618|ref|YP_001712411.1| 30S ribosomal protein S4 [Acinetobacter baumannii AYE] gi|213158811|ref|YP_002320809.1| ribosomal protein S4 [Acinetobacter baumannii AB0057] gi|215482207|ref|YP_002324389.1| ribosomal protein S4 [Acinetobacter baumannii AB307-0294] gi|239503210|ref|ZP_04662520.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB900] gi|260557051|ref|ZP_05829268.1| ribosomal protein S4 [Acinetobacter baumannii ATCC 19606] gi|293610848|ref|ZP_06693148.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|294839723|ref|ZP_06784406.1| 30S ribosomal protein S4 [Acinetobacter sp. 6013113] gi|294842677|ref|ZP_06787360.1| 30S ribosomal protein S4 [Acinetobacter sp. 6014059] gi|294860401|ref|ZP_06798170.1| 30S ribosomal protein S4 [Acinetobacter sp. 6013150] gi|301345034|ref|ZP_07225775.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB056] gi|301512035|ref|ZP_07237272.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB058] gi|301595208|ref|ZP_07240216.1| 30S ribosomal protein S4 [Acinetobacter baumannii AB059] gi|152060924|sp|A3M960|RS4_ACIBT RecName: Full=30S ribosomal protein S4 gi|226697785|sp|B7GW26|RS4_ACIB3 RecName: Full=30S ribosomal protein S4 gi|226697786|sp|B7IA15|RS4_ACIB5 RecName: Full=30S ribosomal protein S4 gi|226697788|sp|B0VQU2|RS4_ACIBS RecName: Full=30S ribosomal protein S4 gi|226697789|sp|B0V6U6|RS4_ACIBY RecName: Full=30S ribosomal protein S4 gi|169147545|emb|CAM85406.1| 30S ribosomal protein S4 [Acinetobacter baumannii AYE] gi|169151166|emb|CAO99838.1| 30S ribosomal protein S4 [Acinetobacter baumannii] gi|193078463|gb|ABO13454.2| 30S ribosomal protein S4 [Acinetobacter baumannii ATCC 17978] gi|213057971|gb|ACJ42873.1| ribosomal protein S4 [Acinetobacter baumannii AB0057] gi|213986640|gb|ACJ56939.1| ribosomal protein S4 [Acinetobacter baumannii AB307-0294] gi|260409657|gb|EEX02958.1| ribosomal protein S4 [Acinetobacter baumannii ATCC 19606] gi|292827192|gb|EFF85557.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|322509484|gb|ADX04938.1| 30S ribosomal protein S4 [Acinetobacter baumannii 1656-2] gi|323519505|gb|ADX93886.1| 30S ribosomal protein S4 [Acinetobacter baumannii TCDC-AB0715] gi|325123580|gb|ADY83103.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus PHEA-2] Length = 208 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|313183995|ref|YP_004021152.1| ribosomal protein S4 [Castanea mollissima] gi|309321522|gb|ADO65062.1| ribosomal protein S4 [Castanea mollissima] Length = 202 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 107/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVNHDNMVAT 178 +LVNGR V+I SYRCK D+I + + K A + + R ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPQDIITARDEQKSRALIQNCLDSSPRDEELPKHLTFHPFQYKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 VNQIIDSK---WVGLKINELLVVEYYSR 200 >gi|122893992|ref|YP_001004188.1| ribosomal protein S4 [Ranunculus macranthus] gi|69216108|gb|AAZ03892.1| ribosomal protein S4 [Ranunculus macranthus] gi|85540806|gb|ABC70758.1| ribosomal protein S4 [Ranunculus macranthus] Length = 201 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRP----TPGSDLRNQSRPGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNFMDSSPHEELPKHLTLHPSQYKGSV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|299768690|ref|YP_003730716.1| 30S ribosomal protein S4 [Acinetobacter sp. DR1] gi|298698778|gb|ADI89343.1| 30S ribosomal protein S4 [Acinetobacter sp. DR1] Length = 208 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDRAD---LPAEINESLIVELYSK 208 >gi|222103442|gb|ACM44250.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum] Length = 202 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R VNI SYRCK D I +K + K A +++ +++ VP +++ N Sbjct: 117 ILVNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKYKVPNHLTFNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESINLKINELLVVEYYSR 200 >gi|118625967|emb|CAL39305.1| small ribosomal protein 4 [Jamesoniella undata] Length = 202 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY CK D I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISINNGIVDIPSYNCKPDDTITIRNKEKSQSIITQNTNLFQKVKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWVNLKINELLVVEYYSR 200 >gi|262373497|ref|ZP_06066775.1| ribosomal protein S4 [Acinetobacter junii SH205] gi|262311250|gb|EEY92336.1| ribosomal protein S4 [Acinetobacter junii SH205] Length = 208 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|167629495|ref|YP_001679994.1| 30S ribosomal protein s4 [Heliobacterium modesticaldum Ice1] gi|226699071|sp|B0TC84|RS4_HELMI RecName: Full=30S ribosomal protein S4 gi|167592235|gb|ABZ83983.1| 30S ribosomal protein s4 [Heliobacterium modesticaldum Ice1] Length = 208 Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K V+ R+Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGPVCRLCRREGAKLYLKGERCYTGKCAVDRRTYAPGQHGQGRK-KISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F EADR +G T NL+ LE+RLD +V+R F + ARQ Sbjct: 60 KQKARRVYG-ILEGQFRAYFAEADRQQGVTGENLLRLLETRLDNVVFRLGFARSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 FV H H +NG+ VNI S + + GDVI++K+KSK E L ++ P ++ ++ + Sbjct: 119 FVLHNHFTLNGKKVNIPSIQLRVGDVIQLKEKSKDTPLFKEIVDGLGQKTPPAWLELDVN 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P K +Q +L+VE YSR Sbjct: 179 TLSGRVIALP---KREDIDTNLQEHLIVELYSR 208 >gi|254456438|ref|ZP_05069867.1| ribosomal protein S4 [Candidatus Pelagibacter sp. HTCC7211] gi|207083440|gb|EDZ60866.1| ribosomal protein S4 [Candidatus Pelagibacter sp. HTCC7211] Length = 205 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 122/206 (59%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR +SKHK+DRR+ NLWGRPKSP NTR+YGPG HGQ R+ KPS +G+QL+AKQK+K Sbjct: 1 MTKRLNSKHKVDRRLKVNLWGRPKSPFNTRAYGPGQHGQSRQGKPSDYGIQLQAKQKLKA 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+I+E++FR+I+K+A +GDT NLI LE RLD ++YRAKF TIF+ARQ +NH H Sbjct: 61 YYGNINERQFRNIYKKAVMLKGDTGENLIGLLERRLDAVIYRAKFATTIFSARQLINHNH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNIGSY KE D IE++ KSKQLA + A ER+ PEYI ++ N FV Sbjct: 121 VRVNGKKVNIGSYLVKEEDSIEIRDKSKQLAIIDIALANKEREAPEYIQMDEKNKKFKFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++VPYP++M+PNLV+E+YSR Sbjct: 181 RTP-KFEEVPYPIVMEPNLVIEYYSR 205 >gi|7440168|pir||JE0399 ribosomal protein S4 - Thermus aquaticus (strain HB8) Length = 209 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ + PK + R Y PG HGQ+R +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ Sbjct: 61 KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S+ + Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLEVE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R+P +D+ PV LV+EFYSR Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209 >gi|139388096|ref|YP_001123288.1| ribosomal protein S4 [Barbarea verna] gi|139388912|ref|YP_001123639.1| ribosomal protein S4 [Lepidium virginicum] gi|139389098|ref|YP_001123816.1| ribosomal protein S4 [Nasturtium officinale] gi|152060546|sp|A4QKA7|RR4_BARVE RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060553|sp|A4QLA8|RR4_LEPVR RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060555|sp|A4QLT5|RR4_NASOF RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286487|dbj|BAF50112.1| ribosomal protein S4 [Barbarea verna] gi|134286842|dbj|BAF50463.1| ribosomal protein S4 [Lepidium virginicum] gi|134287021|dbj|BAF50640.1| ribosomal protein S4 [Nasturtium officinale] Length = 201 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|118627520|emb|CAL39394.1| small ribosomal protein 4 [Lophozia ascendens] Length = 202 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQXLLQLLEMRLDNTIFRLGMAXTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFXKMKIPSHLTFDLTQLQGXV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118626011|emb|CAL39323.1| small ribosomal protein 4 [Gymnocolea inflata] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKLKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNGQKSQSIITKNINLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 DQMVNR---EWVNLKINELLVVEYYSR 200 >gi|41323093|gb|AAR99776.1| small ribosomal protein 4 [Plagiochila buchtiniana] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNYIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118626021|emb|CAL41740.1| small ribosomal protein 4 [Syzygiella autumnalis] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + S+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTFKSKSSFI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRFGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISVNNGIVDIPSYNCEPGDTITIRNKQKSQSIITKNTNLFQKIKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|300721390|ref|YP_003710661.1| 30S ribosomal subunit protein S4 [Xenorhabdus nematophila ATCC 19061] gi|297627878|emb|CBJ88424.1| 30S ribosomal subunit protein S4 [Xenorhabdus nematophila ATCC 19061] Length = 206 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LESRLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLNLLESRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNGR VNI SY+ DV+ V++K+K+ A + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAITVNGRVVNIASYQVSPNDVVSVREKAKKQARIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|118626145|emb|CAL39370.1| small ribosomal protein 4 [Barbilophozia hatcheri] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRSKQKSQSIITQNINLFQKLKIPSHLTFELAQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|118625933|emb|CAL39288.1| small ribosomal protein 4 [Jamesoniella purpurascens] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD I ++ K K + + + + L ++ +P ++ + + Sbjct: 117 ISVNNGIVDIPSYNCEPGDTITIRNKQKSQSIITKNTNLFQKVKIPSHLIFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWVNLKINELLVVEYYSR 200 >gi|156598368|gb|ABU85444.1| ribosomal protein S4 [Musa acuminata] Length = 201 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + L+ ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIALSPPEELPKHLTFDSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIDLKINELLVVEYYSR 199 >gi|114329970|ref|YP_740652.1| ribosomal protein S4 [Nandina domestica] gi|122165959|sp|Q09FV9|RR4_NANDO RecName: Full=30S ribosomal protein S4, chloroplastic gi|114054472|gb|ABI49865.1| ribosomal protein S4 [Nandina domestica] Length = 201 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----TPGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSPHEELPKHLTLHSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|81428454|ref|YP_395454.1| 30S ribosomal protein S4 [Lactobacillus sakei subsp. sakei 23K] gi|90101691|sp|Q38XD6|RS4_LACSS RecName: Full=30S ribosomal protein S4 gi|78610096|emb|CAI55145.1| 30S Ribosomal protein S4 [Lactobacillus sakei subsp. sakei 23K] Length = 201 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K K+ RR+G +L G K + R Y PG HG R+ K S +G+QL KQK++ Sbjct: 1 MSRYTGPKWKLSRRLGISLSGTGKE-LARRPYAPGQHGNDRRGKISEYGMQLSEKQKLRL 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G NL+ LE RLD IVYR T ARQ VNH Sbjct: 60 MYG-LTERQFRNLFARAGKIREGKHGVNLMILLEQRLDNIVYRLGLASTRAQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV V+G+ V+I SY K G I +++KSK L + +A + P ++ + DN+ + Sbjct: 119 HVTVDGKRVDIPSYEVKPGQEISIREKSKNLVIIKDAIE-GTVGRPSFVEFDADNLKGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + L+VEFY+R Sbjct: 178 VRLPERSELEP---EIDEALIVEFYNR 201 >gi|66990678|emb|CAI29117.1| small ribosomal protein 4 [Plagiochila rubescens] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNLNSFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118626147|emb|CAL39371.1| small ribosomal protein 4 [Anastrepta orcadensis] Length = 202 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGLRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNNTVDIPSYNCEPGDIITIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|114329748|ref|YP_740567.1| ribosomal protein S4 [Platanus occidentalis] gi|122166033|sp|Q09G44|RR4_PLAOC RecName: Full=30S ribosomal protein S4, chloroplastic gi|114054386|gb|ABI49780.1| ribosomal protein S4 [Platanus occidentalis] Length = 201 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKSP----KAGSDLRNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSSHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLQINELLVVEYYSR 199 >gi|48527399|gb|AAT45832.1| small ribosomal protein 4 [Plagiochila patzschkei] Length = 202 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRXKIIRRLGSLPGLTSKTLKSKSNYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNIHSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|166092841|gb|ABY82372.1| ribosomal protein S4 [Silene uniflora] Length = 201 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K +A + + +VP++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSIALIQNFIDSSPPEEVPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|11467355|ref|NP_043212.1| ribosomal protein S4 [Cyanophora paradoxa] gi|1350893|sp|P48133|RR4_CYAPA RecName: Full=Cyanelle 30S ribosomal protein S4 gi|1016156|gb|AAA81243.1| ribosomal protein S4 [Cyanophora paradoxa] Length = 201 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + V R Y PG HGQ + K S + ++L KQK++ Sbjct: 1 MSRYKGPSLRIIRRLGE-LPGLTRKVVKKRKYPPGQHGQ-KSRKRSEYAIRLEEKQKLRY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + A + +G T L+ LE RLD IV+R PTI A+RQ VNH H Sbjct: 59 NYG-LTERQLVQCVRRAKQMKGSTGQILLQLLEMRLDNIVFRLGMAPTIPASRQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN + V+I SY+CK GD+I VK+++ V ++P ++ + + Sbjct: 118 ICVNNKVVSIPSYQCKPGDIITVKERNASKKIVETNLLFPGLANLPSHLEFDKSKLQGKV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + L+VEFYSR Sbjct: 178 NDIIQR---EWVALEVNELLIVEFYSR 201 >gi|257425833|ref|ZP_05602257.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428499|ref|ZP_05604897.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431133|ref|ZP_05607510.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 68-397] gi|257433815|ref|ZP_05610173.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus E1410] gi|257436732|ref|ZP_05612776.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus M876] gi|282911345|ref|ZP_06319147.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WBG10049] gi|282914514|ref|ZP_06322300.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M899] gi|282924860|ref|ZP_06332526.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C101] gi|293503592|ref|ZP_06667439.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 58-424] gi|293510608|ref|ZP_06669313.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus M809] gi|293537149|ref|ZP_06671829.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M1015] gi|257271527|gb|EEV03673.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275340|gb|EEV06827.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 65-1322] gi|257278081|gb|EEV08729.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 68-397] gi|257281908|gb|EEV12045.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus E1410] gi|257284083|gb|EEV14206.1| SSU ribosomal protein S4 [Staphylococcus aureus subsp. aureus M876] gi|282313226|gb|EFB43622.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C101] gi|282321695|gb|EFB52020.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M899] gi|282325040|gb|EFB55350.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WBG10049] gi|290919994|gb|EFD97062.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus M1015] gi|291095258|gb|EFE25523.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus 58-424] gi|291466499|gb|EFF09020.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus M809] gi|312437824|gb|ADQ76895.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus TCH60] Length = 200 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPSQTISVREKSQKLNIIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|118626091|emb|CAL41754.1| small ribosomal protein 4 [Cephalozia lunulifolia] gi|118626099|emb|CAL39351.1| small ribosomal protein 4 [Cephalozia lunulifolia] Length = 202 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGVLPGLTGKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQSLKYVRIARKAKGSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISMNNNIVDIPSYNCEPGDIITIRNKQKSKSMITKNLNLFQKLKMPSHLTFDLTQLEGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMVNR---EWVNLKINELLVVEYYSR 200 >gi|239637962|ref|ZP_04678923.1| ribosomal protein S4 [Staphylococcus warneri L37603] gi|239596525|gb|EEQ79061.1| ribosomal protein S4 [Staphylococcus warneri L37603] Length = 200 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAAKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+GR V+I SY K G + V++KS++L + E+ ++ VPEY++ + D++ TFV Sbjct: 119 IEVDGRRVDIPSYSLKPGQEVAVREKSQKLNIITESVEI-NNFVPEYLNFDADSLKGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RFPERSE---LPAEINEQLIVEYYSR 200 >gi|254421878|ref|ZP_05035596.1| ribosomal protein S4 [Synechococcus sp. PCC 7335] gi|196189367|gb|EDX84331.1| ribosomal protein S4 [Synechococcus sp. PCC 7335] Length = 202 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ KS ++Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGDLPGLTRKSA--RKAYPPGQHGQARKKK-SEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ K+A R+ G T ++ LE RLD ++R PTI AARQ VNH H Sbjct: 58 NYG-VTERQLLRYVKKARRAGGSTGQVILQQLEMRLDNTIFRLGMGPTIPAARQVVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNGR V+I SY+C+ GDVI V+ K V + ++P ++ + + A Sbjct: 117 ITVNGRVVSIPSYQCRPGDVIGVRGKEASKKLVTANLEFPGLANIPTHLDFDKGKLEAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 TGVIER---EWIALNINELLVVEYYSR 200 >gi|218779737|ref|YP_002431055.1| ribosomal protein S4 [Desulfatibacillum alkenivorans AK-01] gi|226697835|sp|B8FER0|RS4_DESAA RecName: Full=30S ribosomal protein S4 gi|218761121|gb|ACL03587.1| ribosomal protein S4 [Desulfatibacillum alkenivorans AK-01] Length = 208 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S +I RR L+ + K + RSY PG HGQRR +K S +G+QLR Sbjct: 1 MARYRGSVCRICRRENLKLFLKGDRCYSDKCAFDRRSYPPGQHGQRR-TKISDYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG ++EK+F FK+AD ++G T NL+ LE RLD ++YR F ARQ Sbjct: 60 KQKIKRMYG-LTEKQFHLTFKKADHAKGITGTNLLVNLERRLDNVIYRLGFADCRTQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H VNG VNI S + GD IEV++KS+ +A + A + +A R +P+++ ++ Sbjct: 119 MVRHNHFTVNGHKVNIPSAQVSIGDTIEVREKSRTVAVITNAMEAVARRGLPQWLELDKA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N P +D+ P MQ L+VE YS+ Sbjct: 179 NFKGVVNAYPVR-EDLTMP--MQEQLIVELYSK 208 >gi|49483960|ref|YP_041184.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA252] gi|282904289|ref|ZP_06312177.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus C160] gi|282906114|ref|ZP_06313969.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909029|ref|ZP_06316847.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282919482|ref|ZP_06327217.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C427] gi|283958469|ref|ZP_06375920.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus A017934/97] gi|295428289|ref|ZP_06820918.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590748|ref|ZP_06949386.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MN8] gi|56749409|sp|Q6GFY8|RS4_STAAR RecName: Full=30S ribosomal protein S4 gi|49242089|emb|CAG40788.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MRSA252] gi|282317292|gb|EFB47666.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus C427] gi|282327293|gb|EFB57588.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331406|gb|EFB60920.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus Btn1260] gi|282595907|gb|EFC00871.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus C160] gi|283790618|gb|EFC29435.1| ribosomal protein S4 [Staphylococcus aureus subsp. aureus A017934/97] gi|295127689|gb|EFG57326.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575634|gb|EFH94350.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus MN8] gi|315195623|gb|EFU26010.1| 30S ribosomal protein S4 [Staphylococcus aureus subsp. aureus CGS00] Length = 200 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S +GLQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F A + G N + L SRLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K I V++KS++L ++E+ ++ VPEY++ + D++ TFV Sbjct: 119 ILVDGKRVDIPSYSVKPSQTISVREKSQKLNVIVESVEI-NNFVPEYLNFDADSLTGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RLPERSE---LPAEINEQLIVEYYSR 200 >gi|183600728|ref|ZP_02962221.1| hypothetical protein PROSTU_04324 [Providencia stuartii ATCC 25827] gi|212709003|ref|ZP_03317131.1| hypothetical protein PROVALCAL_00035 [Providencia alcalifaciens DSM 30120] gi|268593565|ref|ZP_06127786.1| ribosomal protein S4 [Providencia rettgeri DSM 1131] gi|188019708|gb|EDU57748.1| hypothetical protein PROSTU_04324 [Providencia stuartii ATCC 25827] gi|212688369|gb|EEB47897.1| hypothetical protein PROVALCAL_00035 [Providencia alcalifaciens DSM 30120] gi|291310842|gb|EFE51295.1| ribosomal protein S4 [Providencia rettgeri DSM 1131] Length = 206 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DVI V++K+K+ + + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|260061922|ref|YP_003195002.1| 30S ribosomal protein S4 [Robiginitalea biformata HTCC2501] gi|88786055|gb|EAR17224.1| 30S ribosomal protein S4 [Robiginitalea biformata HTCC2501] Length = 201 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K ++Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFGEAIFGDDK-AFEKKNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F +A+RS+G T L+ ESRLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFRNLFAQANRSKGVTGEVLLQLCESRLDNVVYRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY GDV+ V++KSK L ++ ++ +V E+IS N D TF Sbjct: 119 HITVNGELVNIPSYSLSAGDVVGVREKSKSLQAIEDSLS-NHSNVYEWISWNSDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VAVPERLQ---IPENIKEQLIVELYSK 201 >gi|186682136|ref|YP_001865332.1| 30S ribosomal protein S4 [Nostoc punctiforme PCC 73102] gi|226699095|sp|B2J1M8|RS4_NOSP7 RecName: Full=30S ribosomal protein S4 gi|186464588|gb|ACC80389.1| ribosomal protein S4 [Nostoc punctiforme PCC 73102] Length = 202 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSA--RRAYPPGQHGQNRK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRLGIAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR VNI SY+C+ G+VI V+ +++ V Q ++P ++ + + +V Sbjct: 117 VTVNGRVVNIASYQCRPGEVIAVRDRAQSRKLVEANLQYPGLANLPSHLEFDKNKLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NSVIER---EWVALQVNELLVVEYYSR 200 >gi|260549816|ref|ZP_05824032.1| ribosomal protein S4 [Acinetobacter sp. RUH2624] gi|260407066|gb|EEX00543.1| ribosomal protein S4 [Acinetobacter sp. RUH2624] Length = 208 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIDVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|238025957|ref|YP_002910188.1| 30S ribosomal protein S4 [Burkholderia glumae BGR1] gi|237875151|gb|ACR27484.1| 30S ribosomal protein S4 [Burkholderia glumae BGR1] Length = 207 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG + NI S + K GDVI +++KSK+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGVASNIPSLQVKPGDVIAIREKSKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAE---IAGDINESLIVELYSR 207 >gi|313677145|ref|YP_004055141.1| SSU ribosomal protein s4p [Marivirga tractuosa DSM 4126] gi|312943843|gb|ADR23033.1| SSU ribosomal protein S4P [Marivirga tractuosa DSM 4126] Length = 201 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K KI RR E ++G K ++ ++Y PG HG+ R+ K S + +QL KQK K Sbjct: 1 MARYKGPKSKIARRFNEPIFGASK-ALSKKAYPPGQHGRGRRRKQSEYAIQLMEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F ++F +A R +G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFANLFDKASRKKGITGEVLLQLLESRLDNVVFRLGIAPTRRAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG +NI SY+ KE DVI V++KSK L ++ ++ ++ + +M FV Sbjct: 119 ILVNGEILNIPSYQVKESDVIGVREKSKSLEAITDSLSSNTASKYSWLEFDKSSMSGKFV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P + L+VE YS+ Sbjct: 179 NIPQR---EDIPENINEQLIVELYSK 201 >gi|290477169|ref|YP_003470084.1| 30S ribosomal subunit protein S4 [Xenorhabdus bovienii SS-2004] gi|289176517|emb|CBJ83326.1| 30S ribosomal subunit protein S4 [Xenorhabdus bovienii SS-2004] Length = 206 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRTYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG VNI SY+ DV+ V++K+K+ A + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGCVVNIASYQVSPNDVVSVREKAKKQARIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|41323123|gb|AAR99791.1| small ribosomal protein 4 [Plagiochila pulcherrima] Length = 202 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---ERSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMCIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + + +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSQSIVTKNINSFHKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118627538|emb|CAL39402.1| small ribosomal protein 4 [Lophozia excisa] Length = 202 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I +K K K + + + L ++ +P ++ + + + Sbjct: 117 ISVNNDTVDIPSYNCQPGDIITIKNKPKSQSIITKNLNLFQKLKIPSHLIFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMVNR---EWVNLKINELLVVEYYSR 200 >gi|26399186|sp|Q9M4B9|RR4_DIPFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017364|emb|CAB92129.1| small ribosomal protein 4 [Diphyscium foliosum] Length = 202 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTSKTPQLKSNSI---NQSASNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R VNI SYRCK D I +K++ K +++ L+++ +P +++ N Sbjct: 117 ILVNDRIVNIPSYRCKPQDFITIKERQKSQGIIVKNMDLSQKYKIPNHLTFNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|288801124|ref|ZP_06406580.1| ribosomal protein S4 [Prevotella sp. oral taxon 299 str. F0039] gi|288332058|gb|EFC70540.1| ribosomal protein S4 [Prevotella sp. oral taxon 299 str. F0039] Length = 201 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRKKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNLFEKAAKASGITGEVLLQLLESRLDNVVFRMGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G VI V++K+K L + A +I ++ F+ Sbjct: 119 IIVDGSVVNIPSYSVKPGQVIGVREKAKSLEVIETALAGFNHSKYPWIEWDNATKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HTPERAD---IPENIKEQLIVELYSK 201 >gi|229577756|ref|YP_002836092.1| ribosomal protein S4 [Megaleranthis saniculifolia] gi|226933884|gb|ACO92017.1| ribosomal protein S4 [Megaleranthis saniculifolia] Length = 201 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRP----TPGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + + ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQRSRALIQNYLDSSPHEELPKHLTLHSSQYKGSV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|290487068|gb|ADD29918.1| ribosomal protein S4 [Ilex cornuta] Length = 201 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGNDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K + V + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSIVLVQNSLDSSPHEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|197287092|ref|YP_002152964.1| 30S ribosomal protein S4 [Proteus mirabilis HI4320] gi|227354912|ref|ZP_03839326.1| 30S ribosomal protein S4 [Proteus mirabilis ATCC 29906] gi|226699106|sp|B4F1K8|RS4_PROMH RecName: Full=30S ribosomal protein S4 gi|194684579|emb|CAR46428.1| 30S ribosomal protein S4 [Proteus mirabilis HI4320] gi|227164994|gb|EEI49833.1| 30S ribosomal protein S4 [Proteus mirabilis ATCC 29906] Length = 206 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|218439509|ref|YP_002377838.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 7424] gi|226697832|sp|B7KK85|RS4_CYAP7 RecName: Full=30S ribosomal protein S4 gi|218172237|gb|ACK70970.1| ribosomal protein S4 [Cyanothece sp. PCC 7424] Length = 202 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + ++ RR+GE K+ R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MARYRGPRLRVVRRLGELPGLTRKNA--RRAYPPGQHGQNRR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ + A R+ G T L+ LE RLD V+R TI AARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRRARRATGSTGQTLLQLLEMRLDNTVFRLGMAGTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SY+C+ GDVI+V+ + K V + ++P ++ + + ++ Sbjct: 117 ILVNDRVVDIASYQCRPGDVIKVRDQDKSRKLVQANMEYPGLANLPSHLEFDKNTLIGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWIALNINELLVVEYYSR 200 >gi|329956728|ref|ZP_08297301.1| ribosomal protein S4 [Bacteroides clarus YIT 12056] gi|328524100|gb|EGF51176.1| ribosomal protein S4 [Bacteroides clarus YIT 12056] Length = 201 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VN+ SY K G VI V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNVPSYAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNAKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|125975412|ref|YP_001039322.1| SSU ribosomal protein S4P [Clostridium thermocellum ATCC 27405] gi|256005301|ref|ZP_05430267.1| ribosomal protein S4 [Clostridium thermocellum DSM 2360] gi|281419374|ref|ZP_06250389.1| ribosomal protein S4 [Clostridium thermocellum JW20] gi|152060944|sp|A3DJK0|RS4_CLOTH RecName: Full=30S ribosomal protein S4 gi|125715637|gb|ABN54129.1| SSU ribosomal protein S4P [Clostridium thermocellum ATCC 27405] gi|255990737|gb|EEU00853.1| ribosomal protein S4 [Clostridium thermocellum DSM 2360] gi|281406994|gb|EFB37257.1| ribosomal protein S4 [Clostridium thermocellum JW20] gi|316939528|gb|ADU73562.1| ribosomal protein S4 [Clostridium thermocellum DSM 1313] Length = 208 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K + R Y PG HGQ K K S +GLQLR Sbjct: 1 MARYTGASCRLCRREGEKLYLKGERCTTNKCAIARRGYAPGQHGQN-KKKLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG I E +FR F+ A + +G T NL+ LESRLD +VYR + ARQ Sbjct: 60 KQKARRYYG-ILEGQFRRYFEMAVKKKGITGENLLQILESRLDNVVYRMGLAVSRREARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H VNG+ V+I SY K GDVI VK+KSK + + A R P+++ + + Sbjct: 119 LVRHGHFTVNGKRVDIPSYLVKVGDVIAVKEKSKSSPKMQSNKEYAAGRPRPKWLEYDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M V +P+ +D+ P+ NL+VE YS+ Sbjct: 179 EMSGKVVALPAR-EDIDLPIR--ENLIVELYSK 208 >gi|184159574|ref|YP_001847913.1| 30S ribosomal protein S4 [Acinetobacter baumannii ACICU] gi|226697787|sp|B2HZ84|RS4_ACIBC RecName: Full=30S ribosomal protein S4 gi|183211168|gb|ACC58566.1| 30S ribosomal protein S4 [Acinetobacter baumannii ACICU] Length = 208 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKSGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|15605669|ref|NP_213044.1| 30S ribosomal protein S4 [Aquifex aeolicus VF5] gi|6226103|sp|O66484|RS4_AQUAE RecName: Full=30S ribosomal protein S4 gi|2982819|gb|AAC06442.1| ribosomal protein S04 [Aquifex aeolicus VF5] Length = 211 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 6/211 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQ 56 M + K+DRR G + G+ +P + R+Y PG HG++ R+ K + +GL+L KQ Sbjct: 1 MGRYIGPWVKLDRRFGVVVSGKKSAPKILARRNYPPGQHGRKYGRRKKLTEYGLRLMEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG + EK+F+ F A +S+ +T L+ +LE RLD +VYR F T ARQ V Sbjct: 61 KLKFLYGGLREKQFKKYFDMASKSKENTGEMLLQYLERRLDNVVYRLGFASTRRQARQLV 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 H HVLVNG+ VNI SY + GDVIE+K+KS+ + + E + + R +P ++ ++ DN Sbjct: 121 AHGHVLVNGKKVNIPSYLVEPGDVIEIKEKSRDIPFIKENLENVDPRSIPSWLELDKDNF 180 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P ++++ + + +VEFYS+ Sbjct: 181 RGRVVRLPENVQE-YLEIPINLQYIVEFYSK 210 >gi|262280201|ref|ZP_06057985.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus RUH2202] gi|262257979|gb|EEY76713.1| 30S ribosomal protein S4 [Acinetobacter calcoaceticus RUH2202] Length = 208 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMDVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDRAD---LPAEINESLIVELYSK 208 >gi|89257421|gb|ABD64913.1| Chloroplast 30S ribosomal protein S4 [Brassica oleracea] Length = 201 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + + + A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLIQNLLESSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|118626015|emb|CAL39325.1| small ribosomal protein 4 [Nardia scalaris] Length = 202 Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDIVDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|89280637|ref|YP_514854.1| ribosomal protein S4 [Solanum lycopersicum] gi|91208990|ref|YP_538850.1| ribosomal protein S4 [Solanum bulbocastanum] gi|108773132|ref|YP_635641.1| ribosomal protein S4 [Solanum tuberosum] gi|90101662|sp|Q2MI98|RR4_SOLLC RecName: Full=30S ribosomal protein S4, chloroplastic gi|90101667|sp|Q2MII5|RR4_SOLBU RecName: Full=30S ribosomal protein S4, chloroplastic gi|90101668|sp|Q2VEH5|RR4_SOLTU RecName: Full=30S ribosomal protein S4, chloroplastic gi|82754629|gb|ABB90043.1| ribosomal protein S4 [Solanum tuberosum] gi|84371897|gb|ABC56215.1| ribosomal protein S4 [Solanum bulbocastanum] gi|84371985|gb|ABC56302.1| ribosomal protein S4 [Solanum lycopersicum] gi|88656806|gb|ABD47059.1| ribosomal protein S4 [Solanum tuberosum] gi|89241673|emb|CAJ32395.1| ribosomal protein S4 [Solanum lycopersicum] Length = 201 Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKP----RTGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K + K A + + + ++P ++++ Sbjct: 116 ILVNGHIVDIPSYRCKPRDIITAKDEQKSRALIQISLDSSPHEELPNHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118626081|emb|CAL39344.1| small ribosomal protein 4 [Blepharidophyllum densifolium] Length = 202 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G ++ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSRTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITVKNKQKSQSIITKNIHLFQKLKIPSHLTFDSTELRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|258512643|ref|YP_003186077.1| 30S ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479369|gb|ACV59688.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 208 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K V+ R Y PG HGQ RK + + +G+QLR Sbjct: 1 MARYTGPVCRLCRREGIKLYLKGERCFSEKCAVDKRPYAPGQHGQGRK-RTTEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG + E +F ++EA R RG T L+ LESRLD +VYR F + ARQ Sbjct: 60 KQKARRYYG-VLENQFERYYEEAARRRGVTGETLLQLLESRLDNVVYRLGFAASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+ VNGR V+I S+ KEGDV+ V++KS+ A + E ++L R +P ++ ++ + Sbjct: 119 LVRHGHIQVNGRRVDIPSFLVKEGDVVSVREKSRDNARLKELAELIPSRTIPAWLELDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N A +R P+ + +Q +VEFYSR Sbjct: 179 NWTAKVLRRPARDE---IDAPVQEQQIVEFYSR 208 >gi|255690029|ref|ZP_05413704.1| ribosomal protein S4 [Bacteroides finegoldii DSM 17565] gi|260624636|gb|EEX47507.1| ribosomal protein S4 [Bacteroides finegoldii DSM 17565] Length = 201 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDEASKVGKML 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|289065091|ref|YP_003433977.1| ribosomal protein S4 [Typha latifolia] gi|69216110|gb|AAZ03893.1| ribosomal protein S4 [Typha latifolia] gi|281371774|gb|ADA63701.1| ribosomal protein S4 [Typha latifolia] Length = 201 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + + A ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDNQKSKGLIQNSIASAAHEELPKHLTIDSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|118627508|emb|CAL39388.1| small ribosomal protein 4 [Lophozia ventricosa var. ventricosa] Length = 202 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCETGDIITIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|306486207|gb|ADM92745.1| ribosomal protein S4 [Davidia involucrata] Length = 201 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQNSLDSSPHEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|48527359|gb|AAT45812.1| small ribosomal protein 4 [Plagiochila bantamensis] Length = 202 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD + R PT+ ARQ VNH H Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTILRLGMSPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ + K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNEQKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 NQMIDR---EWINLQINELLVVEYYSR 200 >gi|48527355|gb|AAT45810.1| small ribosomal protein 4 [Plagiochila asplenioides] Length = 202 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYS---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ITINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|157689422|gb|ABV65267.1| ribosomal protein S4 [Berberidopsis corallina] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSKALIQNYLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|163786165|ref|ZP_02180613.1| 30S ribosomal protein S4 [Flavobacteriales bacterium ALC-1] gi|159878025|gb|EDP72081.1| 30S ribosomal protein S4 [Flavobacteriales bacterium ALC-1] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ G+ ++G K R+Y PG HG +R+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGQAIFGDDK-AFEKRNYPPGQHGANKRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++FK A ++G T L+ ESRLD +V+R PT ARQ V+HR Sbjct: 60 YTYG-VLEKQFRNMFKRATAAQGITGEVLLQLCESRLDNVVFRMGVSPTRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY+ K GDV+ V++KSK L ++ + + +V E+I+ N+D M T+ Sbjct: 119 HITVNGEKVNVPSYQLKAGDVVGVREKSKSLEAITNSLANSS-NVYEWITWNNDTMEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ + P + +VE YS+ Sbjct: 178 VSVPAR---IQIPEQINEQFIVELYSK 201 >gi|48527407|gb|AAT45836.1| small ribosomal protein 4 [Plagiochila punctata] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNIYSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|41323107|gb|AAR99783.1| small ribosomal protein 4 [Plagiochila diversifolia] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNYIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|253991665|ref|YP_003043021.1| 30S ribosomal protein S4 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783115|emb|CAQ86280.1| 30s ribosomal subunit protein s4 [Photorhabdus asymbiotica] Length = 206 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+S LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 VKMEGVFKRIPERAD---LSADINEHLIVELYSK 206 >gi|260592739|ref|ZP_05858197.1| ribosomal protein S4 [Prevotella veroralis F0319] gi|288803959|ref|ZP_06409382.1| ribosomal protein S4 [Prevotella melaninogenica D18] gi|302345100|ref|YP_003813453.1| ribosomal protein S4 [Prevotella melaninogenica ATCC 25845] gi|260535270|gb|EEX17887.1| ribosomal protein S4 [Prevotella veroralis F0319] gi|288333592|gb|EFC72044.1| ribosomal protein S4 [Prevotella melaninogenica D18] gi|302149280|gb|ADK95542.1| ribosomal protein S4 [Prevotella melaninogenica ATCC 25845] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFDKAAKAEGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG VNI SY+ K GDV+ V++K+K L + A ++ + + F+ Sbjct: 119 IVVNGNVVNIASYQVKAGDVVGVREKAKSLEVIEAALAGFNHSKYPWLEWDDNAKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HRPDRAD---IPENIKEQLIVELYSK 201 >gi|53715440|ref|YP_101432.1| 30S ribosomal protein S4 [Bacteroides fragilis YCH46] gi|60683412|ref|YP_213556.1| 30S ribosomal protein S4 [Bacteroides fragilis NCTC 9343] gi|265767574|ref|ZP_06095240.1| ribosomal protein S4 [Bacteroides sp. 2_1_16] gi|61215469|sp|Q64NN4|RS4_BACFR RecName: Full=30S ribosomal protein S4 gi|81313536|sp|Q5L8D5|RS4_BACFN RecName: Full=30S ribosomal protein S4 gi|52218305|dbj|BAD50898.1| 30S ribosomal protein S4 [Bacteroides fragilis YCH46] gi|60494846|emb|CAH09653.1| putative 30S ribosomal protein S4 [Bacteroides fragilis NCTC 9343] gi|263252879|gb|EEZ24391.1| ribosomal protein S4 [Bacteroides sp. 2_1_16] gi|301164897|emb|CBW24458.1| putative 30S ribosomal protein S4 [Bacteroides fragilis 638R] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD IV+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQMLEGRLDNIVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDEASKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|282858349|ref|ZP_06267529.1| ribosomal protein S4 [Prevotella bivia JCVIHMP010] gi|282588797|gb|EFB93922.1| ribosomal protein S4 [Prevotella bivia JCVIHMP010] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 114/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKTRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A +S G T L+ LE+RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNLFEKAAKSSGITGEVLLQSLEARLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG VNI SY K GDV+ V++K+K L + A ++ + + F+ Sbjct: 119 ITVNGDVVNIASYNVKAGDVVGVREKAKSLEVIEAALAGFNHSKYPWLEWDENAKAGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HRPDRAD---IPENIKEQLIVELYSK 201 >gi|166092852|gb|ABY82379.1| ribosomal protein S4 [Silene conica] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + A +VP++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSAPPEEVPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|110456606|gb|ABG74733.1| ribosomal protein S4 [Forsythia europaea] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIIMAKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|325269509|ref|ZP_08136125.1| 30S ribosomal protein S4 [Prevotella multiformis DSM 16608] gi|324988128|gb|EGC20095.1| 30S ribosomal protein S4 [Prevotella multiformis DSM 16608] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFDKAAKADGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG VNI SY+ K GDV+ V++K+K L + A ++ + + F+ Sbjct: 119 IVVNGNVVNIASYQVKAGDVVGVREKAKSLEVIEAALAGFNHSKYPWLEWDENGKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HRPDRAD---IPENIKEQLIVELYSK 201 >gi|261346911|ref|ZP_05974555.1| ribosomal protein S4 [Providencia rustigianii DSM 4541] gi|282564977|gb|EFB70512.1| ribosomal protein S4 [Providencia rustigianii DSM 4541] Length = 206 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DVI V++K+K+ + + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRMPERTD---LSADINEHLIVELYSK 206 >gi|262400804|gb|ACY66293.1| ribosomal protein S4 [Brassica napus] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V + A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLESSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|261880856|ref|ZP_06007283.1| 30S ribosomal protein S4 [Prevotella bergensis DSM 17361] gi|270332363|gb|EFA43149.1| 30S ribosomal protein S4 [Prevotella bergensis DSM 17361] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 114/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G+QL KQK K Sbjct: 1 MARYIGPKSRISRRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKQSEYGIQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A +S G T L+ LE RLD +VYR PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFVKAAKSGGITGEVLLQLLECRLDNVVYRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G ++ V+++SK L ++ A ++ + F+ Sbjct: 119 ITVDGQVVNIPSYSVKAGQIVGVRERSKSLEAIDAALAGFNHSKYPWLEWDEHTKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HTPER---EDIPENIKEQLIVELYSK 201 >gi|139389644|ref|YP_001123201.1| ribosomal protein S4 [Arabis hirsuta] gi|139390154|ref|YP_001123727.1| ribosomal protein S4 [Lobularia maritima] gi|152060545|sp|A4QK20|RR4_ARAHI RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060554|sp|A4QLJ6|RR4_LOBMA RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286399|dbj|BAF50025.1| ribosomal protein S4 [Arabis hirsuta] gi|134286931|dbj|BAF50551.1| ribosomal protein S4 [Lobularia maritima] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|153805982|ref|ZP_01958650.1| hypothetical protein BACCAC_00227 [Bacteroides caccae ATCC 43185] gi|149130659|gb|EDM21865.1| hypothetical protein BACCAC_00227 [Bacteroides caccae ATCC 43185] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDEASKVGKML 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|139389420|ref|YP_001123117.1| ribosomal protein S4 [Olimarabidopsis pumila] gi|152060556|sp|A4QJT5|RR4_OLIPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286314|dbj|BAF49941.1| ribosomal protein S4 [Olimarabidopsis pumila] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDDQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|118627518|emb|CAL39393.1| small ribosomal protein 4 [Calypogeia integristipula] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKVLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R +G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARRVKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I V++K K + + + + ++ +P +++++ + Sbjct: 117 ISINNNIVDIPSYNCEPGDIITVREKQKSQSIITKNINVFQKLKIPSHLTIDSTELRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWIDLKINELLVVEYYSR 200 >gi|298372562|ref|ZP_06982552.1| ribosomal protein S4 [Bacteroidetes oral taxon 274 str. F0058] gi|298275466|gb|EFI17017.1| ribosomal protein S4 [Bacteroidetes oral taxon 274 str. F0058] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE L+G K ++ +++ PG HGQ R K S + QLR KQK K Sbjct: 1 MARYIGPKSKISRKFGEPLFGSDKV-LSRKNFPPGQHGQARSRKKSEYAKQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A R +G T LI LE RLD +VYR PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFVKAQRQKGITGAILIQLLECRLDNVVYRLGMAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG +NI SY K+GD+I V++K K + + EA ++ + + M F+ Sbjct: 119 IIVNGEVLNIPSYIVKQGDIIGVREKDKSMIVITEALAGHNHSKYPWLEWDKNLMAGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P +Q L+VE YS+ Sbjct: 179 HIPER---EDIPENIQEQLIVELYSK 201 >gi|313204943|ref|YP_004043600.1| SSU ribosomal protein s4p [Paludibacter propionicigenes WB4] gi|312444259|gb|ADQ80615.1| SSU ribosomal protein S4P [Paludibacter propionicigenes WB4] Length = 201 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K + ++Y PG HGQ R+ K S +G+QLR KQK K Sbjct: 1 MARYIGPKSRIARKFGEAIFGPDKV-LAKKNYPPGQHGQGRRKKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+++++A R++G T L+ LESRLD IVYR F PT ARQ V+H+H Sbjct: 60 TYG-VLEKQFRNMYEKAQRTKGVTGEVLLQLLESRLDNIVYRLGFAPTRSGARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY + G VI V++K K + + + +I N ++ ++ Sbjct: 119 ITVDGKVVNIASYHVRAGQVIAVREKDKSMEVIAASLNGFNHSKYPWIEWNAASLSGVYL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ L+VE YS+ Sbjct: 179 HIPER---EDIPENIKEQLIVELYSK 201 >gi|119484418|ref|ZP_01619035.1| 30S ribosomal protein S4 [Lyngbya sp. PCC 8106] gi|119457892|gb|EAW39015.1| 30S ribosomal protein S4 [Lyngbya sp. PCC 8106] Length = 202 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K V R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRK--VARRAYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K+A R+ G T L+ LE RLD ++R PTI ARQ VNH H Sbjct: 58 NYG-LSEKQLLRYVKKARRATGSTGQVLLQMLEMRLDNTIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VN R V++ SY+C+ GDV+ ++ K K V Q +VP ++ ++ + ++A Sbjct: 117 VTVNDRVVDVASYQCRPGDVVGIRNKEKSREMVKANLQYPGLANVPSHLELDKEKLLAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NSVIDR---EWVALQVNELLVVEYYSR 200 >gi|14278533|pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 gi|14278554|pdb|1I95|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With Edeine gi|14278575|pdb|1I96|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With The Translation Initiation Factor If3 (C-Terminal Domain) gi|14278597|pdb|1I97|D Chain D, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With Tetracycline gi|20663889|pdb|1J5E|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit gi|27065879|pdb|1N32|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Bound To Codon And Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The First Codon Position At The A Site With Paromomycin gi|27065906|pdb|1N33|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit Bound To Codon And Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The Second Codon Position At The A Site With Paromomycin gi|27065933|pdb|1N34|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In The Presence Of Codon And Crystallographically Disordered Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The First Codon Position gi|27065959|pdb|1N36|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In The Presence Of Crystallographically Disordered Codon And Near-Cognate Transfer Rna Anticodon Stem-Loop Mismatched At The Second Codon Position gi|34811532|pdb|1PNS|D Chain D, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. gi|34811588|pdb|1PNX|D Chain D, Crystal Structure Of The Wild Type Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pnx, Contains Only Molecules Of The 30s Ribosomal Subunit. The 50s Subunit Is In The Pdb File 1pny. gi|56966326|pdb|1VOQ|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966379|pdb|1VOS|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966432|pdb|1VOV|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966485|pdb|1VOX|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|56966538|pdb|1VOZ|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. gi|149241278|pdb|2E5L|D Chain D, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction gi|224510686|pdb|3FIC|D Chain D, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands gi|226887632|pdb|2ZM6|D Chain D, Crystal Structure Of The Thermus Thermophilus 30s Ribosomal Subunit gi|300508608|pdb|3MR8|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). gi|300508663|pdb|3MS0|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3mrz. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (30s) And 3ms1 (50s). gi|322812553|pdb|3PYN|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|322812606|pdb|3PYQ|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|322812659|pdb|3PYS|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|322812712|pdb|3PYU|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 30s Subunit Of The Second 70s Ribosome Length = 208 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 11/211 (5%) Query: 3 KRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 + ++ RR G L+ + PK + R Y PG HGQ+R +PS + ++LR KQ Sbjct: 2 RYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQ 61 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ V Sbjct: 62 KLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNM 175 H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S++ + M Sbjct: 121 RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGM 180 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P +D+ PV LV+EFYSR Sbjct: 181 KGKFLRLPDR-EDLALPV--NEQLVIEFYSR 208 >gi|118626095|emb|CAL39349.1| small ribosomal protein 4 [Barbilophozia barbata] Length = 202 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I V+ + K + + + L ++ +P +++ + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITVRGRQKSQSIITQNINLFQKLKIPSHLTFELAQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVDLKINELLVVEYYSR 200 >gi|220928235|ref|YP_002505144.1| ribosomal protein S4 [Clostridium cellulolyticum H10] gi|254764580|sp|B8I807|RS4_CLOCE RecName: Full=30S ribosomal protein S4 gi|219998563|gb|ACL75164.1| ribosomal protein S4 [Clostridium cellulolyticum H10] Length = 208 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K V R Y PG HGQ RK K S +G+QLR Sbjct: 1 MARYTDASCRLCRREGEKLFLKGERCYTDKCSVARRPYAPGQHGQGRK-KMSEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 K K++++YG + E +F F+ A R +G T NL+ LE+RLD +VYR + +RQ Sbjct: 60 KAKVRRFYG-VLEGQFSKYFEVASRRKGITGENLLQILETRLDNVVYRLGLGTSRPESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H VNG+ VNI SY K GDVI V SK V ++A + +P+++ + + Sbjct: 119 LVTHGHFTVNGKRVNIPSYLIKVGDVIAVADNSKNSPKVKSIREIAGGKVIPKWLEFDEE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V V +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVVALPAR-EDIDLPIK--EHLIVELYSK 208 >gi|300864160|ref|ZP_07109054.1| 30S ribosomal protein S4 [Oscillatoria sp. PCC 6506] gi|300337850|emb|CBN54200.1| 30S ribosomal protein S4 [Oscillatoria sp. PCC 6506] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KSP R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSP--RRAYPPGQHGQNRK-KRSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-ISERQLLRYVRKARRVTGSTGQVLLQMLEMRLDNTVFRMGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 V VN R+V+I S++CK GDV+ VK + V + +P ++ + +V Sbjct: 117 VTVNDRTVDIASFQCKPGDVVAVKNTERSRLLVEANLKYPGLAHLPSHLEFDKQKLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +++ + + LVVE+YSR Sbjct: 177 NG---TVEREWIALQVNELLVVEYYSR 200 >gi|283794970|ref|YP_003359361.1| ribosomal protein S4 [Olea europaea] gi|330850745|ref|YP_004376423.1| ribosomal protein S4 [Olea europaea subsp. europaea] gi|281428689|gb|ADA69928.1| ribosomal protein S4 [Olea europaea] gi|291059255|gb|ADD72091.1| ribosomal protein S4 [Olea europaea] gi|328795435|emb|CBR30317.1| ribosomal protein S4 [Olea europaea subsp. europaea] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIIMTKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|41323085|gb|AAR99772.1| small ribosomal protein 4 [Plagiochila adiantoides] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + + L ++ +P ++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIITKNINLFQKLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|139389803|ref|YP_001123464.1| ribosomal protein S4 [Crucihimalaya wallichii] gi|152060549|sp|A4QKT3|RR4_CRUWA RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286665|dbj|BAF50288.1| ribosomal protein S4 [Crucihimalaya wallichii] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLIDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|41323129|gb|AAR99794.1| small ribosomal protein 4 [Plagiochila rutilans] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|262277060|ref|ZP_06054853.1| ribosomal protein S4 [alpha proteobacterium HIMB114] gi|262224163|gb|EEY74622.1| ribosomal protein S4 [alpha proteobacterium HIMB114] Length = 205 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 120/206 (58%), Positives = 161/206 (78%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR SKHK+DRR+G N+WGRPKSP N+R+YGPG HGQR +KPS + +QL+AKQK+K Sbjct: 1 MTKRIKSKHKVDRRLGTNIWGRPKSPFNSRAYGPGQHGQRSSAKPSDYKVQLQAKQKLKN 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++E++FR++++EADR RG+T NL+ LESRLD ++YRAKF T+F ARQ +NH H Sbjct: 61 YYGNLNERQFRNLYREADRRRGNTGENLVGLLESRLDAVIYRAKFATTVFQARQLINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI S++ + D +E+K+ SKQLA VL ++QL ERDVPEYI +H M A Sbjct: 121 VKVNGKRVNISSFKLNDKDEVEIKESSKQLAYVLASTQLKERDVPEYIFADHKKMTAKLA 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++PYP IM+PNLVVE+YSR Sbjct: 181 RVP-KFDEIPYPAIMEPNLVVEYYSR 205 >gi|110227081|ref|YP_665560.1| ribosomal protein S4 [Populus alba] gi|134093201|ref|YP_001109503.1| ribosomal protein S4 [Populus trichocarpa] gi|122224628|sp|Q14FF5|RR4_POPAL RecName: Full=30S ribosomal protein S4, chloroplastic gi|152060558|sp|A4GYR2|RR4_POPTR RecName: Full=30S ribosomal protein S4, chloroplastic gi|109945519|dbj|BAE97207.1| ribosomal protein S4 [Populus alba] gi|133712063|gb|ABO36706.1| ribosomal protein S4 [Populus trichocarpa] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRAGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRVMIQNSLDSFPQEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S + + LVVE+YSR Sbjct: 176 NHIIDSK---WIGLKINELLVVEYYSR 199 >gi|315633478|ref|ZP_07888768.1| 30S ribosomal protein S4 [Aggregatibacter segnis ATCC 33393] gi|315477520|gb|EFU68262.1| 30S ribosomal protein S4 [Aggregatibacter segnis ATCC 33393] Length = 206 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++KSK+ A + + +LA +++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVISVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|73662353|ref|YP_301134.1| 30S ribosomal protein S4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82581622|sp|Q49YF2|RS4_STAS1 RecName: Full=30S ribosomal protein S4 gi|72494868|dbj|BAE18189.1| 30S ribosomal protein S4 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 200 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S + LQLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYALQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR+ F+ A G N + L +RLD +VY T ARQ VNH H Sbjct: 60 LYG-MTERQFRNTFEIAGNQHGVHGENFMQLLAARLDAVVYSLGLARTRRQARQIVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K G I V++KS +L + E+ ++ VP+Y+ + DN+ ++ Sbjct: 119 IEVDGKRVDIPSYTLKPGQEISVREKSLKLDIIAESVEI-NNFVPDYLEFDADNLKGKYI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + P + L+VE+YSR Sbjct: 178 RVPERSE---LPAEINEQLIVEYYSR 200 >gi|288906416|ref|YP_003431638.1| Ribosomal protein S4 [Streptococcus gallolyticus UCN34] gi|306832453|ref|ZP_07465605.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979478|ref|YP_004289194.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733142|emb|CBI14723.1| Ribosomal protein S4 [Streptococcus gallolyticus UCN34] gi|304425353|gb|EFM28473.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179406|emb|CBZ49450.1| 30S ribosomal protein S4 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGHPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+Y++ Sbjct: 178 TRLPERDE---INPEINEALIVEYYNK 201 >gi|139387254|ref|YP_001123375.1| ribosomal protein S4 [Capsella bursa-pastoris] gi|297837951|ref|XP_002886857.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] gi|152060547|sp|A4QKJ4|RR4_CAPBU RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286575|dbj|BAF50199.1| ribosomal protein S4 [Capsella bursa-pastoris] gi|297332698|gb|EFH63116.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|284006139|emb|CBA71381.1| 30S ribosomal protein S4 [Arsenophonus nasoniae] Length = 206 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLNLLEGRLDNTVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI SY+ DVI V++K+K+ + + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGQVVNIASYQVSPNDVISVREKAKKQSRIKAALELAEQREKPSWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERAD---LSADINEHLIVELYSK 206 >gi|167391807|ref|YP_001671685.1| ribosomal protein S4 [Carica papaya] gi|166344134|gb|ABY86784.1| ribosomal protein S4 [Carica papaya] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G + P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSQRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRMGMALTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I VK + K A + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDTITVKDEQKSRALIQSFLDSSTHEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---WVGLKINELLVVEYYSR 199 >gi|150392132|ref|YP_001322181.1| ribosomal protein S4 [Alkaliphilus metalliredigens QYMF] gi|171460826|sp|A6TWF4|RS4A_ALKMQ RecName: Full=30S ribosomal protein S4 A gi|149951994|gb|ABR50522.1| ribosomal protein S4 [Alkaliphilus metalliredigens QYMF] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R++ PG HG RK K S +G+QLR Sbjct: 1 MARYTDAVCRLCRREGLKLYLKGERCYTDKCAITKRNFAPGQHGTSRK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K++YG + E +FR F AD+ G+T NL+ LE+RLD +VYR + ARQ Sbjct: 60 KQKAKRFYG-VLESQFRKYFDMADKQAGNTGENLLRILETRLDNLVYRLGLASSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H VNG V+I SY K GD + V +KS E + + VP +++V+ + Sbjct: 119 LVVHGHFTVNGGKVDIPSYLVKAGDAVAVSEKSTNSPKFKELKENFKGTVPTWLTVDSEK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +PS +D+ P+ NL+VE YS+ Sbjct: 179 LEGKVAAMPSR-EDIDLPIS--ENLIVELYSK 207 >gi|118626077|emb|CAL39342.1| small ribosomal protein 4 [Plicanthus hirtellus] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYSCESGDIITIRNKQKSQSIITKNINLFQKSKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|120609325|ref|YP_969003.1| 30S ribosomal protein S4 [Acidovorax citrulli AAC00-1] gi|152060922|sp|A1TJU1|RS4_ACIAC RecName: Full=30S ribosomal protein S4 gi|120587789|gb|ABM31229.1| SSU ribosomal protein S4P [Acidovorax citrulli AAC00-1] Length = 207 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 134/214 (62%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSK---PGQHGRTSGARTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ ADR +G+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIASYLVKPGDVVAVREKSKKQARIVEALQLAQQVGIPAWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + TF + P + + + +L+VE YSR Sbjct: 177 DKVEGTFKKAPDRDE---FGADINESLIVELYSR 207 >gi|41323113|gb|AAR99786.1| small ribosomal protein 4 [Plagiochila gymnocalycina] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRIKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLVKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I +K K K + V + ++ +P +++ N + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIKNKQKSQSIVTKNINSFQKLKIPSHLTFNSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118625947|emb|CAL39295.1| small ribosomal protein 4 [Gymnocoleopsis multiflora] Length = 202 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVSIARKAKGSTGQVLLQLLEMRLDNTIFRLGIAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SY C+ GD+I +K K K + + + ++ +P +++ + + + Sbjct: 117 ILVNSNLVDIPSYNCEPGDIITIKNKQKSQSIISKNLNSFQKSKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQ---RVNREWVNLKINELLVVEYYSR 200 >gi|290487074|gb|ADD29921.1| ribosomal protein S4 [Nelumbo nucifera] Length = 201 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRP----KAGSDLRNQARSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|226953895|ref|ZP_03824359.1| 30S ribosomal protein S4 [Acinetobacter sp. ATCC 27244] gi|294651610|ref|ZP_06728914.1| 30S ribosomal protein S4 [Acinetobacter haemolyticus ATCC 19194] gi|226835378|gb|EEH67761.1| 30S ribosomal protein S4 [Acinetobacter sp. ATCC 27244] gi|292822459|gb|EFF81358.1| 30S ribosomal protein S4 [Acinetobacter haemolyticus ATCC 19194] Length = 208 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHNKAPGQHGQARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRSEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMEVDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|313673441|ref|YP_004051552.1| SSU ribosomal protein s4p [Calditerrivibrio nitroreducens DSM 19672] gi|312940197|gb|ADR19389.1| SSU ribosomal protein S4P [Calditerrivibrio nitroreducens DSM 19672] Length = 208 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + + Y PG HGQ K K S +G+QLR Sbjct: 1 MARYTGPSCKLCRREGMKLYLKGERCYKDKCGIEKKGYPPGQHGQ-LKKKLSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG I E +FR F+ A +G T NL+ LE RLD VYRA F + ARQ Sbjct: 60 KQKVKRIYG-ILESQFRLYFERATNMKGITGENLLQLLERRLDNAVYRAGFASSRTQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNG+ VNI SY K GDVIE+++KS+ ++E+ + +E R E++S++ Sbjct: 119 LVRHNHFTVNGKKVNIPSYLLKVGDVIELREKSRDNKLIVESLETSEGRGTAEWLSIDKA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A R+P +Q +L+VE YS+ Sbjct: 179 AFKAVVNRLPER---SDIGYDIQEHLIVELYSK 208 >gi|255011672|ref|ZP_05283798.1| 30S ribosomal protein S4 [Bacteroides fragilis 3_1_12] gi|313149508|ref|ZP_07811701.1| 30S ribosomal protein S4 [Bacteroides fragilis 3_1_12] gi|313138275|gb|EFR55635.1| 30S ribosomal protein S4 [Bacteroides fragilis 3_1_12] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDEASKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|118626161|emb|CAL39378.1| small ribosomal protein 4 [Lophozia wenzelii] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQXLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNCEXGDIITIRNKQKSQSIITKNLNLFRKMKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|253566696|ref|ZP_04844149.1| 30S ribosomal protein S4 [Bacteroides sp. 3_2_5] gi|251944868|gb|EES85343.1| 30S ribosomal protein S4 [Bacteroides sp. 3_2_5] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGIQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD IV+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQMLEGRLDNIVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGQVVNIPSYVVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDEASKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|149390542|ref|YP_001294186.1| ribosomal protein S4 [Buxus microphylla] gi|172048678|sp|A6MM38|RR4_BUXMI RecName: Full=30S ribosomal protein S4, chloroplastic gi|146762287|gb|ABQ45251.1| ribosomal protein S4 [Buxus microphylla] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|86132569|ref|ZP_01051162.1| 30S ribosomal protein S4 [Dokdonia donghaensis MED134] gi|85816811|gb|EAQ37996.1| 30S ribosomal protein S4 [Dokdonia donghaensis MED134] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFSEAIFGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAVQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR+++ A+R+ G T L+ E RLD +VYR P+ ARQ V HR Sbjct: 60 YTYG-ILERQFRNMYDRANRAPGITGEVLLQLCECRLDNVVYRMGMSPSRSGARQLVGHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDVI V++KSK L + + A V E+I+ N+D TF Sbjct: 119 HITVNGNIVNIPSYQVKAGDVIAVREKSKSLEVISNSLSNASH-VFEWITWNNDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P + +VE YS+ Sbjct: 178 VAVPQRLQ---IPENINTQFIVELYSK 201 >gi|48527391|gb|AAT45828.1| small ribosomal protein 4 [Plagiochila ovalifolia] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ITINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ S + + LVVE+YSR Sbjct: 177 NQMISR---EWINLKINELLVVEYYSR 200 >gi|56964521|ref|YP_176252.1| 30S ribosomal protein S4 [Bacillus clausii KSM-K16] gi|61215394|sp|Q5WEB9|RS4_BACSK RecName: Full=30S ribosomal protein S4 gi|56910764|dbj|BAD65291.1| 30S ribosomal protein S4 [Bacillus clausii KSM-K16] Length = 200 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG ++ K S + LQL KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGVSLSGTGKE-LAKRPYAPGQHGPNQRKKLSEYALQLHEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F F +A + G N + LESRLD +VYR T AARQ VNH H Sbjct: 60 MYG-VNERQFLRTFNDAGKMNGIHGENFMILLESRLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G V+I SYR K G I ++++S+ L V EA + + P Y+S + + + T+ Sbjct: 119 VLVDGSRVDIPSYRVKPGQTIGLRERSRNLTVVKEALDVNDF-TPGYVSFDEEKLEGTYT 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + P + L+VE+YSR Sbjct: 178 RYPERSE---LPAEITEALIVEWYSR 200 >gi|169805298|gb|ACA83748.1| ribosomal protein S4 [Conostomum pentastichum] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|332042696|gb|EGI78896.1| ribosomal protein S4 [Lacinutrix algicola 5H-3-7-4] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDK-AFEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++FK A + G T L+ ESRLD +V+R PT AARQ V+HR Sbjct: 60 YTYG-ILEKQFRNMFKRATAAPGITGEVLLQLCESRLDNVVFRMGIAPTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY+ K GDV+ V++KSK L ++ + + +V E+I+ N + T+ Sbjct: 119 HITVNGELVNVPSYQLKAGDVVAVREKSKSLEAIERSLSNSS-NVFEWITWNTETKQGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ + P + +VE YS+ Sbjct: 178 VSVPAR---IQIPENINEQFIVELYSK 201 >gi|152986119|ref|YP_001346247.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PA7] gi|171460894|sp|A6UZL2|RS4_PSEA7 RecName: Full=30S ribosomal protein S4 gi|150961277|gb|ABR83302.1| ribosomal protein S4 [Pseudomonas aeruginosa PA7] Length = 206 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++EA R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ +++KS+ + +A +L +R E++ V+ D Sbjct: 119 SHKAITVNGQTVNIPSYQVKAGDVVAIREKSRNQLRIAQALELCGQRGRVEWVEVDLDKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P+ + NL+VE YS+ Sbjct: 179 TGTFKSVPAR---SDLSADINENLIVELYSK 206 >gi|118625965|emb|CAL39304.1| small ribosomal protein 4 [Leptoscyphus ovatus] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLEPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD++ ++ + K + + + L ++ +P +++ + + + Sbjct: 117 ISINDDIVDIPSYNCEPGDILTIRNRQKSQSIITKNINLFQKLKIPSHLTFDPIKLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 177 TQIINR---EWINLKINELLVVEYYSR 200 >gi|118627512|emb|CAL39390.1| small ribosomal protein 4 [Lophozia sudetica] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNTNLFQKLKIPSHLTFELAQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|161784194|ref|YP_001595510.1| ribosomal protein S4 [Lemna minor] gi|88696772|gb|ABD48497.1| ribosomal protein S4 [Lemna minor] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KSGSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + A + +VP++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDIISTKDNQRSKALIQNNMTSSPPEEVPKHLTLDSIQSKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|281423813|ref|ZP_06254726.1| ribosomal protein S4 [Prevotella oris F0302] gi|281402040|gb|EFB32871.1| ribosomal protein S4 [Prevotella oris F0302] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G VI V++KSK L + A +I + ++ F+ Sbjct: 119 ITVDGKVVNIPSFAVKPGMVIAVREKSKSLEVIEAALAGFNHSKYPWIEWDDNSKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|253701896|ref|YP_003023085.1| 30S ribosomal protein S4 [Geobacter sp. M21] gi|259495281|sp|C6E4N1|RS4_GEOSM RecName: Full=30S ribosomal protein S4 gi|251776746|gb|ACT19327.1| ribosomal protein S4 [Geobacter sp. M21] Length = 208 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + RSY PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGR-IKVSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD + YR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR VNI S + K GDV+++++KS+++A++ E+ + + R +P+++ + D Sbjct: 119 LVRHGHFTLNGRKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P +D+ P +Q L+VE YS+ Sbjct: 179 AFKGTVKAMPVR-EDITMP--IQEQLIVELYSK 208 >gi|29348111|ref|NP_811614.1| 30S ribosomal protein S4 [Bacteroides thetaiotaomicron VPI-5482] gi|253569617|ref|ZP_04847027.1| 30S ribosomal protein S4 [Bacteroides sp. 1_1_6] gi|298386205|ref|ZP_06995762.1| ribosomal protein S4 [Bacteroides sp. 1_1_14] gi|41017839|sp|Q8A4A1|RS4_BACTN RecName: Full=30S ribosomal protein S4 gi|29340014|gb|AAO77808.1| 30S ribosomal protein S4 [Bacteroides thetaiotaomicron VPI-5482] gi|251841636|gb|EES69717.1| 30S ribosomal protein S4 [Bacteroides sp. 1_1_6] gi|298261433|gb|EFI04300.1| ribosomal protein S4 [Bacteroides sp. 1_1_14] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI S+ K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNIPSFAVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDETSKVGKML 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|118627498|emb|CAL39383.1| small ribosomal protein 4 [Lophozia sudetica] gi|118627542|emb|CAL39404.1| small ribosomal protein 4 [Protolophozia debiliformis] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIRNKRKSQSIITQNINLFQKLKIPSHLTFELAQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|37528520|ref|NP_931865.1| 30S ribosomal protein S4 [Photorhabdus luminescens subsp. laumondii TTO1] gi|41017820|sp|Q7MYH4|RS4_PHOLL RecName: Full=30S ribosomal protein S4 gi|36787958|emb|CAE17075.1| 30S ribosomal protein S4 [Photorhabdus luminescens subsp. laumondii TTO1] Length = 206 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+S LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEATRLKGNTGENLLSLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ V++KSK+ + + A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 VKMEGVFKRIPERAD---LSADINEHLIVELYSK 206 >gi|295694865|ref|YP_003588103.1| ribosomal protein S4 [Bacillus tusciae DSM 2912] gi|295410467|gb|ADG04959.1| ribosomal protein S4 [Bacillus tusciae DSM 2912] Length = 208 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K ++ R Y PG HGQ R+ K S +G+QLR Sbjct: 1 MARYTGPVCRLCRREGVKLYLKGERCYSDKCAIDRRGYAPGQHGQGRR-KQSEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + EK+FR ++EA+R G T L+ LE RLD +VYR + + ARQ Sbjct: 60 KQKARRTYG-VLEKQFRHYYEEANRQHGVTGEVLLQLLERRLDNVVYRLGYAASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNGR V+I SY+ KEGDV+ V++KS + + E + A+ R VP ++ + Sbjct: 119 LVRHGHFTVNGRRVDIPSYQLKEGDVVAVREKSLESPRLKELVETADSRTVPAWLDRDSA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +RIP+ + +Q ++VE YSR Sbjct: 179 TASGKVLRIPTRDE---IDTPVQEQMIVELYSR 208 >gi|41323109|gb|AAR99784.1| small ribosomal protein 4 [Pedinophyllum interruptum] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K + S+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKILKSKSSFI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GDVI ++ K + + + + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDVITIRNKQQSQSIITKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWVNLKINELLVVEYYSR 200 >gi|293393288|ref|ZP_06637602.1| 30S ribosomal protein S4 [Serratia odorifera DSM 4582] gi|291424198|gb|EFE97413.1| 30S ribosomal protein S4 [Serratia odorifera DSM 4582] Length = 206 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKGIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|48527371|gb|AAT45818.1| small ribosomal protein 4 [Plagiochila ensiformis] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + + +R +P ++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIITKNINSFQRLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|26399192|sp|Q9M4C2|RR4_RICNA RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017981|emb|CAB92155.1| small ribosomal protein 4 [Ricciocarpos natans] Length = 202 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G K+ + PG Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSK----PGYINQSTSNKKVSQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+L+N +V+I SY CK DVI +K + K + + + ++ +P +++ + + Sbjct: 116 HILINNSTVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKQKIPNHLTFDLMQVKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 VNQIIDR---EWIFLKINELLVVEYYSR 200 >gi|118625999|emb|CAL41737.1| small ribosomal protein 4 [Lepidozia cupressina] Length = 203 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G K+ +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKVIRRLGAPPGLTSKTLKPKSNYN---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 117 ISINNNIVDIPSYNCEPGDIITIRDKQKSRSIIAKNVNLFQNLKIPSHLTFDSIKLCGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NQTIHR---EWINLKINELLVVEYYSR 200 >gi|51891251|ref|YP_073942.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] gi|81692253|sp|Q67T95|RS4B_SYMTH RecName: Full=30S ribosomal protein S4 B gi|51854940|dbj|BAD39098.1| 30S ribosomal protein S4 [Symbiobacterium thermophilum IAM 14863] Length = 201 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KHK+ RR+G L G K P R Y PG HG R K S +G QL KQK++ Sbjct: 1 MARYIGPKHKLCRRVGRPLCGSAKCPALKRPYRPGQHGPGRPQKLSEYGAQLLEKQKLRF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR F++A RSRG T L+ LE RLDT+VYR F T+ AARQ V H H Sbjct: 61 IYG-VMERQFRRYFEQAQRSRGVTGEVLLQLLEQRLDTVVYRLGFARTMAAARQLVGHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V +NGR V+I S + K GDV+ + QK++ LA V E+ L R VP Y+S++ M + Sbjct: 120 VTLNGRRVDIASCQVKPGDVVGLTQKARSLAVVRESLDL-RRPVPPYLSLDETTMTSRLQ 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + PV + +LVVE Y+R Sbjct: 179 RLPLREE---IPVDVDESLVVELYAR 201 >gi|326315414|ref|YP_004233086.1| 30S ribosomal protein S4 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372250|gb|ADX44519.1| ribosomal protein S4 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 207 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 89/214 (41%), Positives = 134/214 (62%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSK---PGQHGRTSGARTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ ADR +G+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GD++ V++KSK+ A ++EA QLA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIASYLVKPGDIVAVREKSKKQARIVEALQLAQQVGIPAWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + TF + P + + + +L+VE YSR Sbjct: 177 DKVEGTFKKAPDRDE---FGADINESLIVELYSR 207 >gi|166092835|gb|ABY82368.1| ribosomal protein S4 [Silene samia] gi|166092855|gb|ABY82381.1| ribosomal protein S4 [Silene latifolia] Length = 201 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + +VP++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEEVPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|183217743|ref|YP_001837362.1| ribosomal protein S4 [Guizotia abyssinica] gi|179366258|gb|ACB86529.1| ribosomal protein S4 [Guizotia abyssinica] Length = 201 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I + + K A + + + ++P ++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDTIAARDEQKSRALIQNSLDSSPHEELPNHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118625961|emb|CAL39302.1| small ribosomal protein 4 [Chiloscyphus vermicularis] Length = 202 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNEIVDIPSYNCEPGDIIAIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|290487066|gb|ADD29917.1| ribosomal protein S4 [Ehretia acuminata] Length = 201 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + + +P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRTLIQNSLDSSPHEGLPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|169805300|gb|ACA83749.1| ribosomal protein S4 [Bartramia stricta] Length = 202 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|118626017|emb|CAL39326.1| small ribosomal protein 4 [Marsupella lacerata] Length = 202 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTFKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD +YR TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIYRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDIVDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPGHLTFDSIELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|117924179|ref|YP_864796.1| 30S ribosomal protein S4P [Magnetococcus sp. MC-1] gi|152060958|sp|A0L5Z7|RS4_MAGSM RecName: Full=30S ribosomal protein S4 gi|117607935|gb|ABK43390.1| SSU ribosomal protein S4P [Magnetococcus sp. MC-1] Length = 208 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK ++ RR L+ + K + R+Y PG HGQRR+ K S +G+ LR Sbjct: 1 MARYLGSKCRLCRREATKLFLKGEKCYSDKCAMERRNYVPGQHGQRRR-KVSDYGVHLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR+++K+A+R +G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKVKRSYG-LLEAQFRTLYKKAERMKGVTGENLLQLLERRLDNVVYRLGLAASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 ++H+ +LVNG+ VN+ SY CK GDV+ V++KS+ + A A +R +P ++ V+ + Sbjct: 119 IISHKTLLVNGKMVNVPSYLCKPGDVVAVREKSRGQLRIKGALASAMQRGLPSWVEVDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V TF IP P NL+VE YS+ Sbjct: 179 KLVGTFRSIPER---SDLPAEFNENLIVELYSK 208 >gi|160888373|ref|ZP_02069376.1| hypothetical protein BACUNI_00786 [Bacteroides uniformis ATCC 8492] gi|317477726|ref|ZP_07936919.1| ribosomal protein S4 [Bacteroides sp. 4_1_36] gi|319900951|ref|YP_004160679.1| SSU ribosomal protein S4P [Bacteroides helcogenes P 36-108] gi|156862050|gb|EDO55481.1| hypothetical protein BACUNI_00786 [Bacteroides uniformis ATCC 8492] gi|316906071|gb|EFV27832.1| ribosomal protein S4 [Bacteroides sp. 4_1_36] gi|319415982|gb|ADV43093.1| SSU ribosomal protein S4P [Bacteroides helcogenes P 36-108] Length = 201 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V+++SK L + + ++ + ++ V + Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNSKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +L+VE YS+ Sbjct: 179 HVPERAD---IPENIKEHLIVELYSK 201 >gi|32480845|ref|NP_862756.1| ribosomal protein S4 [Calycanthus floridus var. glaucus] gi|52783277|sp|Q7YJX0|RR4_CALFG RecName: Full=30S ribosomal protein S4, chloroplastic gi|32399381|emb|CAD28723.1| ribosomal protein S4'' [Calycanthus floridus var. glaucus] Length = 201 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + + ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQRSRALIQNYLDSPSHEELPKHLTFHPSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|307154043|ref|YP_003889427.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 7822] gi|306984271|gb|ADN16152.1| ribosomal protein S4 [Cyanothece sp. PCC 7822] Length = 202 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLTRKNA--RRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ ++A R+ G T L+ LE RLD ++R TI AARQ VNH H Sbjct: 58 NYG-VSEKQLIRYVRKARRATGSTGQVLLQLLEMRLDNTIFRLGMAGTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN + V+I SY+C+ GDVI+VK + + V + ++P ++ + + + Sbjct: 117 ILVNDQVVDIASYQCRPGDVIKVKNQERSRKLVEANMEYPGLANLPSHLEFDKNTFIGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVEFYSR Sbjct: 177 NGVIER---EWIALNINELLVVEFYSR 200 >gi|48527393|gb|AAT45829.1| small ribosomal protein 4 [Plagiochila ovata] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A + +G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKVKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K +++ + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSTITKNINSFQKLKIPSHLNFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 177 NQIINR---EWINLKINELLVVEYYSR 200 >gi|7525035|ref|NP_051061.1| ribosomal protein S4 [Arabidopsis thaliana] gi|6685914|sp|P56799|RR4_ARATH RecName: Full=30S ribosomal protein S4, chloroplastic gi|5881696|dbj|BAA84387.1| ribosomal protein S4 [Arabidopsis thaliana] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E + + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|328541088|gb|AEB21768.1| ribosomal protein S4 [Zoopsis setulosa] Length = 199 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ +Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGTLPGLTSKTAKPKSNYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHGHIAI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + +++ L + +P +++ + + + + Sbjct: 117 NYNIVDIPSYNCEPGDIITIRDKQKSQSVIIKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|197117349|ref|YP_002137776.1| 30S ribosomal protein S4 [Geobacter bemidjiensis Bem] gi|226699068|sp|B5EFS6|RS4_GEOBB RecName: Full=30S ribosomal protein S4 gi|197086709|gb|ACH37980.1| ribosomal protein S4 [Geobacter bemidjiensis Bem] Length = 208 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + RSY PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGR-IKVSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD + YR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG+ VNI S + K GDV+++++KS+++A++ E+ + + R +P+++ + D Sbjct: 119 LVRHGHFTLNGKKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P +D+ P +Q L+VE YS+ Sbjct: 179 AFKGTVKAMPVR-EDITMP--IQEQLIVELYSK 208 >gi|313183824|ref|YP_004021667.1| ribosomal protein S4 [Prunus persica] gi|309321436|gb|ADO64977.1| ribosomal protein S4 [Prunus persica] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKP----RAGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I V+ + K A + R ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKTRDIITVRDEQKSRALIQNYLDSPPREELPKHLTLHPFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|325287073|ref|YP_004262863.1| 30S ribosomal protein S4 [Cellulophaga lytica DSM 7489] gi|324322527|gb|ADY29992.1| ribosomal protein S4 [Cellulophaga lytica DSM 7489] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FEKKNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F +A+ S+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YSYG-ILEKQFRNLFAKANSSKGVTGEVLLQLCESRLDNVVYRMGISNSRRGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L+++ +A A V E+I+ N + T+ Sbjct: 119 HITVNGELVNIPSYSLKPGDVVGVREKSKSLSAIQDALA-ANSRVYEWITWNSEKKEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP V P ++ L+VE YS+ Sbjct: 178 VSIPER---VQIPENIKEQLIVELYSK 201 >gi|160883039|ref|ZP_02064042.1| hypothetical protein BACOVA_01002 [Bacteroides ovatus ATCC 8483] gi|237717425|ref|ZP_04547906.1| 30S ribosomal protein S4 [Bacteroides sp. D1] gi|237718717|ref|ZP_04549198.1| 30S ribosomal protein S4 [Bacteroides sp. 2_2_4] gi|260175442|ref|ZP_05761854.1| 30S ribosomal protein S4 [Bacteroides sp. D2] gi|262406190|ref|ZP_06082740.1| ribosomal protein S4 [Bacteroides sp. 2_1_22] gi|293372094|ref|ZP_06618485.1| ribosomal protein S4 [Bacteroides ovatus SD CMC 3f] gi|294644083|ref|ZP_06721860.1| ribosomal protein S4 [Bacteroides ovatus SD CC 2a] gi|294806543|ref|ZP_06765382.1| ribosomal protein S4 [Bacteroides xylanisolvens SD CC 1b] gi|298483090|ref|ZP_07001271.1| ribosomal protein S4 [Bacteroides sp. D22] gi|299144598|ref|ZP_07037666.1| ribosomal protein S4 [Bacteroides sp. 3_1_23] gi|315923671|ref|ZP_07919911.1| 30S ribosomal protein S4 [Bacteroides sp. D2] gi|156111511|gb|EDO13256.1| hypothetical protein BACOVA_01002 [Bacteroides ovatus ATCC 8483] gi|229443408|gb|EEO49199.1| 30S ribosomal protein S4 [Bacteroides sp. D1] gi|229451849|gb|EEO57640.1| 30S ribosomal protein S4 [Bacteroides sp. 2_2_4] gi|262357065|gb|EEZ06155.1| ribosomal protein S4 [Bacteroides sp. 2_1_22] gi|292632886|gb|EFF51473.1| ribosomal protein S4 [Bacteroides ovatus SD CMC 3f] gi|292640607|gb|EFF58848.1| ribosomal protein S4 [Bacteroides ovatus SD CC 2a] gi|294446238|gb|EFG14866.1| ribosomal protein S4 [Bacteroides xylanisolvens SD CC 1b] gi|295085403|emb|CBK66926.1| SSU ribosomal protein S4P [Bacteroides xylanisolvens XB1A] gi|298270834|gb|EFI12414.1| ribosomal protein S4 [Bacteroides sp. D22] gi|298515089|gb|EFI38970.1| ribosomal protein S4 [Bacteroides sp. 3_1_23] gi|313697546|gb|EFS34381.1| 30S ribosomal protein S4 [Bacteroides sp. D2] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A ++G T L+ LE RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAATAKGITGEVLLQLLEGRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI S+ K G +I V+++SK L + + ++ + + V + Sbjct: 119 ITVDGEVVNIPSFAVKPGQLIGVRERSKSLEVIANSLAGFNHSKYAWLEWDEASKVGKML 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|218289979|ref|ZP_03494156.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius LAA1] gi|218239964|gb|EED07151.1| ribosomal protein S4 [Alicyclobacillus acidocaldarius LAA1] Length = 208 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K V+ R Y PG HGQ RK + + +G+QLR Sbjct: 1 MARYTGPVCRLCRREGIKLYLKGERCFSEKCAVDKRPYAPGQHGQGRK-RTTEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++YYG + E +F ++EA R RG T L+ LESRLD +VYR F + ARQ Sbjct: 60 KQKARRYYG-VLENQFERYYEEAARRRGVTGETLLQLLESRLDNVVYRLGFAASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+ VNGR V+I S+ KEGDV+ V++KS+ A + E ++L R +P ++ ++ + Sbjct: 119 LVRHGHIQVNGRRVDIPSFLVKEGDVVSVREKSRDNARLKELAELIPSRTIPAWLELDVE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N A +R P+ + +Q +VEFYSR Sbjct: 179 NWTAKVLRRPARDE---IDAPVQEQQIVEFYSR 208 >gi|305665112|ref|YP_003861399.1| 30S ribosomal protein S4 [Maribacter sp. HTCC2170] gi|88709864|gb|EAR02096.1| 30S ribosomal protein S4 [Maribacter sp. HTCC2170] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS +SY PG HGQ RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFGEAIFGDDKS-FEKKSYPPGQHGQNRRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F A+RS+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILEKQFRNLFASANRSKGVTGEVLLQLCESRLDNVVYRMGVSTSRRGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L ++ +A + V E+I+ N + TF Sbjct: 119 HITVNGELVNIPSYSLKAGDVVGVREKSKSLQTIEDALSASGH-VYEWITWNSEKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P ++ P ++ L+VE YS+ Sbjct: 178 VSVPERMQ---IPENIKEQLIVELYSK 201 >gi|332170584|gb|AEE19839.1| ribosomal protein S4 [Krokinobacter diaphorus 4H-3-7-5] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAVQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR+++ A+R+ G T L+ E RLD +V+R P+ ARQ V HR Sbjct: 60 YTYG-ILERQFRNMYDRANRAPGITGEVLLQLCECRLDNVVHRMGMSPSRSGARQLVGHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI S++ K GDV+ V++KSK L + + Q + +V E+IS N+D TF Sbjct: 119 HITVNGSIVNIPSFQVKPGDVVAVREKSKSLEVISNSLQNSS-NVYEWISWNNDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P + +VE YS+ Sbjct: 178 VAIPQRLQ---IPENINTQFIVELYSK 201 >gi|41323091|gb|AAR99775.1| small ribosomal protein 4 [Plagiochila britannica] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYS---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ITINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWTNLKINELLVVEYYSR 200 >gi|270294726|ref|ZP_06200927.1| 30S ribosomal protein S4 [Bacteroides sp. D20] gi|270273973|gb|EFA19834.1| 30S ribosomal protein S4 [Bacteroides sp. D20] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-ILEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V+++SK L + + ++ + ++ V + Sbjct: 119 ITVDGEVVNIPSYAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNSKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +L+VE YS+ Sbjct: 179 HVPERAD---IPENIKEHLIVELYSK 201 >gi|118626073|emb|CAL39340.1| small ribosomal protein 4 [Gymnomitrion corallioides] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTFKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDIVDIPSYSCELGDIITVKSKQKSQSIITKNVNLFQKLKIPGHLTFDSIELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|118626135|emb|CAL39365.1| small ribosomal protein 4 [Barbilophozia lycopodioides] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I +K K K + V + L ++ +P +++ + Sbjct: 117 ISVNNDTVDIPSYNCEPGDIITIKSKQKSQSIVTQNINLFQKLKIPSHLTFELAQLRGYV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|46205031|ref|ZP_00049140.2| COG0522: Ribosomal protein S4 and related proteins [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 130/192 (67%), Positives = 150/192 (78%), Gaps = 1/192 (0%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +G+N+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K YYG+I+EK+FR + Sbjct: 1 MGQNIWGRPKSPVNRREYGPGQHGQRRKGKMSDFGTQLRAKQKLKGYYGNITEKQFRRYY 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 EA R RGD+ NLI LE RLD +VYRAKFV T FAARQFVNH HV VNGR VNI S++ Sbjct: 61 AEAIRLRGDSGENLIGLLERRLDAVVYRAKFVATPFAARQFVNHGHVKVNGRRVNIPSFQ 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K GDVIEVK+ S+QL V+ ASQLAERDVP+YI V+H M A RIP L +VPYPV Sbjct: 121 VKAGDVIEVKEASRQLEIVVVASQLAERDVPDYIEVDHQKMSARVTRIPG-LSEVPYPVQ 179 Query: 195 MQPNLVVEFYSR 206 M+PNLV+EFYSR Sbjct: 180 MEPNLVIEFYSR 191 >gi|329962292|ref|ZP_08300298.1| ribosomal protein S4 [Bacteroides fluxus YIT 12057] gi|328530400|gb|EGF57277.1| ribosomal protein S4 [Bacteroides fluxus YIT 12057] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 120/206 (58%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG VN+ SY K G VI V+++SK L + + ++ + ++ V + Sbjct: 119 ITVNGEVVNVPSYAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNSKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +L+VE YS+ Sbjct: 179 HVPERAD---IPENIKEHLIVELYSK 201 >gi|164597809|ref|NP_084669.2| ribosomal protein S4 [Oenothera elata subsp. hookeri] gi|169142699|ref|YP_001687126.1| ribosomal protein S4 [Oenothera argillicola] gi|169142849|ref|YP_001687272.1| ribosomal protein S4 [Oenothera glazioviana] gi|169142934|ref|YP_001687356.1| ribosomal protein S4 [Oenothera biennis] gi|169143020|ref|YP_001687440.1| ribosomal protein S4 [Oenothera parviflora] gi|172045788|sp|Q9MTP1|RR4_OENEH RecName: Full=30S ribosomal protein S4, chloroplastic gi|159792937|gb|ABW98693.1| ribosomal protein S4 [Oenothera argillicola] gi|159793107|gb|ABW98861.1| ribosomal protein S4 [Oenothera biennis] gi|159895461|gb|ABX10026.1| ribosomal protein S4 [Oenothera glazioviana] gi|159895546|gb|ABX10110.1| ribosomal protein S4 [Oenothera parviflora] gi|162423676|emb|CAB67134.2| ribosomal protein S4 [Oenothera elata subsp. hookeri] Length = 203 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G Q S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDPRNQELSGNKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K A + + + +VP++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDDQKSKAMIQNSLESPPHEEVPKHLTFHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDS---EWVGLKINELLVVEYYSR 199 >gi|157689576|gb|ABV65344.1| ribosomal protein S4 [Trochodendron aralioides] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQNYFDSSPHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118626031|emb|CAL41742.1| small ribosomal protein 4 [Marsupella aquatica] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + V+ V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + Sbjct: 117 ISVDNDIVDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWINLKINELLVVEYYSR 200 >gi|48527425|gb|AAT45845.1| small ribosomal protein 4 [Plagiochila trichostoma] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI R +G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRXKIIRCLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ N + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFNSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|13518426|ref|NP_084786.1| ribosomal protein S4 [Lotus japonicus] gi|26399164|sp|Q9BBT5|RR4_LOTJA RecName: Full=30S ribosomal protein S4, chloroplastic gi|13358967|dbj|BAB33184.1| ribosomal protein S4 [Lotus japonicus] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R +K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----TVGSELRNQSRSTKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG V+I SYRCK D+I K K + + + A R ++P ++++ Sbjct: 116 VFVNGHIVDIPSYRCKPQDIITAKDNKKSKTLIQNSLESAPREELPTHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|330432100|gb|AEC17159.1| 30S ribosomal protein S4 [Gallibacterium anatis UMN179] Length = 206 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++KSK+ A + + +LA +++ P ++ V+ Sbjct: 116 QLVSHKAIIVNGRVVNIPSFQVSVDDVIAVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|118625935|emb|CAL39289.1| small ribosomal protein 4 [Jamesoniella oenops] Length = 202 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD I ++ K K + + + + L ++ +P ++ + + Sbjct: 117 ISVNKGIVDIPSYNCEPGDTITIRNKQKSQSIITKNTNLFQKVKIPSHLIFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|85713166|ref|ZP_01044198.1| 30S ribosomal protein S4 [Idiomarina baltica OS145] gi|85693036|gb|EAQ31002.1| 30S ribosomal protein S4 [Idiomarina baltica OS145] Length = 206 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R+ + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIET---APGQHG-ARRGRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARIKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNG+ VNI S+ + DV+ V++K+K+ A + A +L+ +R+ P ++ V+ Sbjct: 116 QLVSHKAVVVNGQVVNIPSFMVRPEDVVSVREKAKKQARISAALELSEQREKPVWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 SKMEGQFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|166092881|gb|ABY82398.1| ribosomal protein S4 [Heliosperma alpestre] Length = 201 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + L+ ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFLDLSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|328541080|gb|AEB21764.1| ribosomal protein S4 [Chiloscyphus semiteres] Length = 200 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ SY K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ Sbjct: 58 G-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHGHIS 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + Sbjct: 117 INNDIVDIPSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 MINR---EWINLKINELLVVEYYSR 198 >gi|41323119|gb|AAR99789.1| small ribosomal protein 4 [Plagiochila magna] Length = 202 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + + K ++V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNEQKSRSTVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|94502493|ref|YP_588119.1| ribosomal protein S4 [Helianthus annuus] gi|122179576|sp|Q1KXV7|RR4_HELAN RecName: Full=30S ribosomal protein S4, chloroplastic gi|88656897|gb|ABD47148.1| ribosomal protein S4 [Helianthus annuus] Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I + + K A + + + ++P ++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDTIAARDEQKSRALIQNSLDSSPPEELPNHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|48527377|gb|AAT45821.1| small ribosomal protein 4 [Plagiochila fuscolutea] Length = 202 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLESKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P ++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118626101|emb|CAL39352.1| small ribosomal protein 4 [Sphenolobopsis pearsonii] Length = 202 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD I ++ K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNNTVDIPSYNCESGDTITIRNKQRSQSMITNNINLFQKSKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|48527387|gb|AAT45826.1| small ribosomal protein 4 [Plagiochila longiramea] Length = 202 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLESKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + + ++ +P ++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIITKNINSFQKLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|11497530|ref|NP_054938.1| ribosomal protein S4 [Spinacia oleracea] gi|133959|sp|P13788|RR4_SPIOL RecName: Full=30S ribosomal protein S4, chloroplastic gi|188036205|pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. gi|7636111|emb|CAB88731.1| ribosomal protein S4 [Spinacia oleracea] gi|225464|prf||1303355A ribosomal protein S4 Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I + + K +A + + L+ R ++P+++++N Sbjct: 116 ILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELPKHLTLNPFPYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|290487062|gb|ADD29915.1| ribosomal protein S4 [Aucuba japonica] Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + + R ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQNSLDSSTREELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|193237702|dbj|BAG50112.1| ribosomal protein S4 protein [Takakia lepidozioides] gi|193237719|dbj|BAG50128.1| ribosomal protein S4 protein [Takakia lepidozioides] Length = 202 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G K+P + Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRVIRRLGALPGLTNKTPQSKSGYI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-VTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R+VNI S+RCK D I K + K A + + +++ ++P ++++N Sbjct: 117 ILVNDRTVNIPSFRCKPQDFITTKDRQKSQAVITKNMDCSQKSEMPNHLTLNSSQKRGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---ESIGLKINELLVVEYYSR 200 >gi|298207752|ref|YP_003715931.1| 30S ribosomal protein S4 [Croceibacter atlanticus HTCC2559] gi|83850390|gb|EAP88258.1| 30S ribosomal protein S4 [Croceibacter atlanticus HTCC2559] Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR +FK+A + G T L+ ESRLD +VYR P+ ARQ V+HR Sbjct: 60 YTYG-ILERQFRGLFKKATAATGITGEVLLQLCESRLDNVVYRMGISPSRPGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L ++ + V E+I+ N++ T+ Sbjct: 119 HITVNGELVNIPSYQLKAGDVVGVREKSKSLDAIQSSLS-NNSTVYEWITWNNEKKEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P V P + +VE YS+ Sbjct: 178 VSVPGR---VQIPENINEQFIVELYSK 201 >gi|116617110|ref|YP_817484.1| ribosomal protein S4 [Coffea arabica] gi|122153623|sp|A0A337|RR4_COFAR RecName: Full=30S ribosomal protein S4, chloroplastic gi|116242166|gb|ABJ89681.1| ribosomal protein S4 [Coffea arabica] Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKP----RAGNDLRNQLRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + ++ + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITGKDEQKSRALIQKSLDSSPQEELPSHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|166092844|gb|ABY82374.1| ribosomal protein S4 [Silene zawadskii] Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ S + + + LVVE+YSR Sbjct: 176 NQLIDSK---WFGLKINELLVVEYYSR 199 >gi|139390350|ref|YP_001122948.1| ribosomal protein S4 [Aethionema cordifolium] gi|152060542|sp|A4QJB7|RR4_AETCO RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286143|dbj|BAF49772.1| ribosomal protein S4 [Aethionema cordifolium] Length = 201 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPKHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|270264349|ref|ZP_06192615.1| 30S ribosomal protein S4 [Serratia odorifera 4Rx13] gi|270041485|gb|EFA14583.1| 30S ribosomal protein S4 [Serratia odorifera 4Rx13] Length = 206 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRMPERTD---LSADINEHLIVELYSK 206 >gi|224827041|ref|ZP_03700138.1| ribosomal protein S4 [Lutiella nitroferrum 2002] gi|224600707|gb|EEG06893.1| ribosomal protein S4 [Lutiella nitroferrum 2002] Length = 206 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG RKS+ S +G+QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRALDSKCKLDSIPGQHG-ARKSRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ F EA R +G T NL+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRNYFAEASRLKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ +++K+K+ A ++E LAE+ P ++SV+ M Sbjct: 119 SHKAIVVNGQVVNIPSFQVKAGDVVAIREKAKKQARIVEGLALAEQGGFPSWVSVDPKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P + + LVVEFYS+ Sbjct: 179 EGVFKSAPERSE---LAGDINEQLVVEFYSK 206 >gi|49079326|gb|AAT49880.1| PA4239 [synthetic construct] Length = 207 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++EA R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ V++KSK + +A +L +R E++ V+ D Sbjct: 119 SHKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ + NL+VE YS+ Sbjct: 179 AGTFKSAPAR---SDLSADINENLIVELYSK 206 >gi|317503955|ref|ZP_07961963.1| 30S ribosomal protein S4 [Prevotella salivae DSM 15606] gi|315664981|gb|EFV04640.1| 30S ribosomal protein S4 [Prevotella salivae DSM 15606] Length = 201 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 114/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LE RLD +VYR PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVYRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G V+ V++KSK L + A +I + + F+ Sbjct: 119 ITVDGKVVNIPSFAVKPGMVVAVREKSKSLEVIEAALAGFNHSKYPWIEWDDNAKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|169794075|ref|YP_001718439.1| ribosomal protein S4 [Manihot esculenta] gi|157695887|gb|ABV66156.1| ribosomal protein S4 [Manihot esculenta] Length = 201 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RVGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-VTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRAMIQNDLDSSPQEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|251793850|ref|YP_003008582.1| 30S ribosomal protein S4 [Aggregatibacter aphrophilus NJ8700] gi|247535249|gb|ACS98495.1| ribosomal protein S4 [Aggregatibacter aphrophilus NJ8700] Length = 206 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|156932259|ref|YP_001436175.1| 30S ribosomal protein S4 [Cronobacter sakazakii ATCC BAA-894] gi|260599616|ref|YP_003212187.1| 30S ribosomal protein S4 [Cronobacter turicensis z3032] gi|171769807|sp|A7MPF7|RS4_ENTS8 RecName: Full=30S ribosomal protein S4 gi|156530513|gb|ABU75339.1| hypothetical protein ESA_00030 [Cronobacter sakazakii ATCC BAA-894] gi|260218793|emb|CBA34141.1| 30S ribosomal protein S4 [Cronobacter turicensis z3032] Length = 206 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ V++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRKPERTD---LSADINEHLIVELYSK 206 >gi|48527417|gb|AAT45841.1| small ribosomal protein 4 [Plagiochila sciophila] Length = 202 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTFKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD + R PTI ARQ VNH H Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVV++YSR Sbjct: 177 NQMIDR---EWINLKINELLVVKYYSR 200 >gi|320547679|ref|ZP_08041964.1| 30S ribosomal protein S4 [Streptococcus equinus ATCC 9812] gi|320447754|gb|EFW88512.1| 30S ribosomal protein S4 [Streptococcus equinus ATCC 9812] Length = 203 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+Y++ Sbjct: 178 TRLPERDE---INPEINEALIVEYYNK 201 >gi|41323087|gb|AAR99773.1| small ribosomal protein 4 [Plagiochila aerea] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLESKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD +YR PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIYRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P ++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|218249063|ref|YP_002374434.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 8801] gi|257062150|ref|YP_003140038.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 8802] gi|226697833|sp|B7JVE5|RS4_CYAP8 RecName: Full=30S ribosomal protein S4 gi|218169541|gb|ACK68278.1| ribosomal protein S4 [Cyanothece sp. PCC 8801] gi|256592316|gb|ACV03203.1| ribosomal protein S4 [Cyanothece sp. PCC 8802] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKNP--RRAYPPGQHGQARK-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E + K+A R+ G T L+ LE RLD V+R TI AARQ VNH H Sbjct: 58 NYG-VTEGQLIRYVKKARRATGSTGQKLLELLEMRLDNTVFRLGMAGTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNG+ V+I SY+C+ G+VI V+ + + V Q ++P ++ + + + Sbjct: 117 ITVNGKVVDIPSYQCRPGEVIAVRNQERSRRLVEANMQYPGLANLPSHLEFDKNTLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NAVIER---EWIALQINELLVVEYYSR 200 >gi|299141173|ref|ZP_07034310.1| ribosomal protein S4 [Prevotella oris C735] gi|298577133|gb|EFI49002.1| ribosomal protein S4 [Prevotella oris C735] Length = 201 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G VI V++KSK L + A +I + ++ F+ Sbjct: 119 ITVDGKVVNIPSFAVKPGMVIAVREKSKSLEVIEVALAGFNHSKYPWIEWDDNSKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|330850632|ref|YP_004376513.1| ribosomal protein S4 [Ptilidium pulcherrimum] gi|302024761|gb|ADK89607.1| ribosomal protein S4 [Ptilidium pulcherrimum] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKILKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVCIARKAKGSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N +VNI SY CK GD+I +K + K + + L ++ +P +++ + + + Sbjct: 117 ISINNDTVNIPSYNCKPGDIITIKNREKSQSIITRNINLFQKLKIPNHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 NQMIHR---EWIHLKINELLVVEYYSR 200 >gi|291286338|ref|YP_003503154.1| 30S ribosomal protein S4 [Denitrovibrio acetiphilus DSM 12809] gi|290883498|gb|ADD67198.1| ribosomal protein S4 [Denitrovibrio acetiphilus DSM 12809] Length = 208 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K + Y PG HGQ RK K S FG QLR Sbjct: 1 MARYTGAVCKLCRREGMKLFLKGERCYKDKCGFEKKPYPPGQHGQGRK-KISDFGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F +A R G T NL+ LE RLD IVYRA F + ARQ Sbjct: 60 KQKVKRLYG-VLEKQFRRYFDKATRMDGITGENLLQLLERRLDNIVYRAGFAGSRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H L++G+ V+I S+ K G VIEV++KS+ ++ + AE R V +++++ Sbjct: 119 MVKHSHFLIDGKKVDIPSFLVKPGMVIEVREKSQNVSRFKDCLDTAEGRGVSDWLALEKS 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N A R+P D+ Y +Q +L+VE YS+ Sbjct: 179 NFKAVVNRLPER-DDIGYD--IQEHLIVELYSK 208 >gi|48527357|gb|AAT45811.1| small ribosomal protein 4 [Plagiochila banksiana] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTVKSKSSY---XDRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSLTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K +++ + ++ +P +++ + + + Sbjct: 117 ISINNNIVDIPSYNCESGDIITIRNKQKSQSAITKNINSFQKLKIPSHLTFDSPQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|166092872|gb|ABY82392.1| ribosomal protein S4 [Silene schafta] Length = 201 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFLDSSPPDELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|306834567|ref|ZP_07467680.1| 30S ribosomal protein S4 [Streptococcus bovis ATCC 700338] gi|304423369|gb|EFM26522.1| 30S ribosomal protein S4 [Streptococcus bovis ATCC 700338] Length = 203 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDTEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y++ Sbjct: 178 TRLPERDE---INPEINEALVVEYYNK 201 >gi|91216885|ref|ZP_01253849.1| 30S ribosomal protein S4 [Psychroflexus torquis ATCC 700755] gi|91185046|gb|EAS71425.1| 30S ribosomal protein S4 [Psychroflexus torquis ATCC 700755] Length = 201 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE+++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGESIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F +A+RS G T L+ ESRLD + YR PT ARQ V+H+ Sbjct: 60 YTYG-ILEKQFRNMFSKANRSTGITGEILLQLCESRLDNVTYRLGIAPTRSGARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ VNI SY+ K DV+ +++KSK L V E+ + V E+++ N + M TF Sbjct: 119 HITVNGQLVNIPSYQIKPNDVVSIREKSKSLNVVQESLS-NNKSVNEWMTWNSEKMQGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V++P + P + +VE YS+ Sbjct: 178 VKVPERSQ---IPEKINEQFIVELYSK 201 >gi|330827906|ref|YP_004390858.1| 30S ribosomal protein S4 [Aeromonas veronii B565] gi|328803042|gb|AEB48241.1| 30S ribosomal protein S4 [Aeromonas veronii B565] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK++ S +G+QLR Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +++A R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++K+K+ A + + ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRLPER---SDLSADINEQLIVELYSK 206 >gi|140083431|gb|ABO84827.1| ribosomal protein S4 [Bartramia halleriana] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKYKIPNHLTYNSLENKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|81176252|ref|YP_398331.1| ribosomal protein S4 [Lactuca sativa] gi|90101661|sp|Q332X6|RR4_LACSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|78675170|dbj|BAE47596.1| chloroplast 30S ribosomal protein S4 [Lactuca sativa] gi|88656985|gb|ABD47235.1| ribosomal protein S4 [Lactuca sativa] Length = 201 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I + + K + + + ++P ++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDTIAARDEQKSKVLIQNSLDSSPHEELPNHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|297840979|ref|XP_002888371.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] gi|297334212|gb|EFH64630.1| ribosomal protein S4 [Arabidopsis lyrata subsp. lyrata] Length = 201 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTSKRP----KAGSDLRNQSRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|251787995|ref|YP_003002716.1| 30S ribosomal protein S4 [Dickeya zeae Ech1591] gi|247536616|gb|ACT05237.1| ribosomal protein S4 [Dickeya zeae Ech1591] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|11466704|ref|NP_039300.1| ribosomal protein S4 [Marchantia polymorpha] gi|133956|sp|P06358|RR4_MARPO RecName: Full=30S ribosomal protein S4, chloroplastic gi|11674|emb|CAA28086.1| rps4 [Marchantia polymorpha] gi|222103416|gb|ACM44237.1| small ribosomal protein subunit 4 [Marchantia polymorpha] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKLKSGYI---NQSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N +V+I SY CK DVI +K +SK + +++ ++ +P +++ + + Sbjct: 117 ILINNNTVDIPSYNCKPKDVITIKDRSKSQSIIIKNLNSFQKQKIPNHLTFDLMQIKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---EWIYLKINELLVVEYYSR 200 >gi|86438902|emb|CAJ55413.1| small ribosomal protein 4 [Plagiochila nobilis] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ G++I ++ + K +++ + ++ VP +++ + + + Sbjct: 117 ISINDDIVDIPSYNCEPGEIITIRNRQKSQSAITKNINSFQKLKVPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + ++ LVVE+YSR Sbjct: 177 NQMINR---EWINLKIKELLVVEYYSR 200 >gi|167855326|ref|ZP_02478094.1| 30S ribosomal protein S4 [Haemophilus parasuis 29755] gi|219871572|ref|YP_002475947.1| 30S ribosomal protein S4 [Haemophilus parasuis SH0165] gi|254764591|sp|B8F6P7|RS4_HAEPS RecName: Full=30S ribosomal protein S4 gi|167853584|gb|EDS24830.1| 30S ribosomal protein S4 [Haemophilus parasuis 29755] gi|219691776|gb|ACL32999.1| 30S ribosomal protein S4 [Haemophilus parasuis SH0165] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DVI V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSIVVNGRVVNIPSYQVSVDDVIAVREKSKKQARIKASLELATQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 176 TKMEGVFKRTPER---SDLSADINEHLIVELYSK 206 >gi|222056680|ref|YP_002539042.1| ribosomal protein S4 [Geobacter sp. FRC-32] gi|254764590|sp|B9M6F3|RS4_GEOSF RecName: Full=30S ribosomal protein S4 gi|221565969|gb|ACM21941.1| ribosomal protein S4 [Geobacter sp. FRC-32] Length = 208 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRRENTELFLKGERCYTDKCAIKRRNYPPGQHGQGRS-KTSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD IVYR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFERADRLKGVTGENLLFLLERRLDNIVYRLGFASSRIEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG+ V I S + K GD +E+++KS+++AS+ E+ + + R +P+++ ++ Sbjct: 119 LVRHGHFTLNGKKVTIPSIQVKTGDTVELREKSRKVASINESLEAVVRRGIPQWLELDKG 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +D+ P +Q L+VE YS+ Sbjct: 179 AFKGSVKTLPVR-EDITMP--IQEQLIVELYSK 208 >gi|77862557|gb|ABB04551.1| small ribosomal protein 4 [Ricciocarpos natans] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N +V+I SY CK DVI +K + K + + + ++ +P +++ + + Sbjct: 117 ILINNSTVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKQKIPNHLTFDLMQVKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---EWIFLKINELLVVEYYSR 200 >gi|15599435|ref|NP_252929.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO1] gi|107103755|ref|ZP_01367673.1| hypothetical protein PaerPA_01004826 [Pseudomonas aeruginosa PACS2] gi|116052274|ref|YP_788880.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa UCBPP-PA14] gi|218889432|ref|YP_002438296.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa LESB58] gi|254237103|ref|ZP_04930426.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa C3719] gi|254242910|ref|ZP_04936232.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 2192] gi|296387204|ref|ZP_06876703.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa PAb1] gi|313111393|ref|ZP_07797198.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 39016] gi|12230936|sp|O52759|RS4_PSEAE RecName: Full=30S ribosomal protein S4 gi|122261423|sp|Q02T56|RS4_PSEAB RecName: Full=30S ribosomal protein S4 gi|226699107|sp|B7V667|RS4_PSEA8 RecName: Full=30S ribosomal protein S4 gi|9950456|gb|AAG07627.1|AE004841_5 30S ribosomal protein S4 [Pseudomonas aeruginosa PAO1] gi|115587495|gb|ABJ13510.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa UCBPP-PA14] gi|126169034|gb|EAZ54545.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa C3719] gi|126196288|gb|EAZ60351.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 2192] gi|218769655|emb|CAW25415.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa LESB58] gi|310883700|gb|EFQ42294.1| 30S ribosomal protein S4 [Pseudomonas aeruginosa 39016] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALDSKCKAENVPGQHGQRR-GRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++EA R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQEASRRKGSTGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ V++KSK + +A +L +R E++ V+ D Sbjct: 119 SHKAITVNGQTVNIPSYQVKAGDVVAVREKSKNQLRIAQALELCGQRGRVEWVEVDLDKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ + NL+VE YS+ Sbjct: 179 AGTFKSAPAR---SDLSADINENLIVELYSK 206 >gi|48527401|gb|AAT45833.1| small ribosomal protein 4 [Plagiochila peculiaris] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTTNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|63101091|gb|AAY33170.1| small ribosomal protein 4 [Platyneuron laticostatum] Length = 202 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN R VNI SYRCK D I +K + K A +++ +++ +P +++ + Sbjct: 116 HILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDQESIGLKINELLVVEYYSR 200 >gi|271502222|ref|YP_003335248.1| 30S ribosomal protein S4 [Dickeya dadantii Ech586] gi|270345777|gb|ACZ78542.1| ribosomal protein S4 [Dickeya dadantii Ech586] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VLVNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|218961407|ref|YP_001741182.1| 30S ribosomal subunit protein S4 [Candidatus Cloacamonas acidaminovorans] gi|167730064|emb|CAO80976.1| 30S ribosomal subunit protein S4 [Candidatus Cloacamonas acidaminovorans] Length = 205 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 90/209 (43%), Positives = 123/209 (58%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+K K KI R+ GEN++G K ++ R Y G HG+ + K S +GL L+ KQKM Sbjct: 1 MAKYTGPKAKICRKFGENIYGNAKYDKILSKRKYPAGQHGRNLRRKLSDYGLHLKEKQKM 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + Y + EK+F + FK+A ++ G T NL+ LE RLD +VYR F T ARQF+NH Sbjct: 61 RHTYC-LMEKQFSNYFKKAAKAPGVTGDNLLQLLERRLDNVVYRMGFAVTRMQARQFINH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNMVA 177 H LVNGR V+I SY K GD+IEV+ KSK + +LEA E P ++SV+ +N Sbjct: 120 GHFLVNGRKVDIPSYLVKAGDIIEVRPKSKGMKPLLEAMDKTEVTSPYSWMSVDKENFRG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F IP+ + PV L+VEFYS+ Sbjct: 180 QFNSIPAVSE---IPVTCDLRLIVEFYSK 205 >gi|157689546|gb|ABV65329.1| ribosomal protein S4 [Quercus nigra] Length = 202 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVNHDNMVAT 178 +LVNGR V+I SYRCK D+I + + K A + + R ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPQDIITARDEQKYRALIKNCLDSSPRDEELPKHLTFHPFQYKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 VNQIIDSK---WVGLKINELLVVEYYSR 200 >gi|325577150|ref|ZP_08147634.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae ATCC 33392] gi|325160732|gb|EGC72853.1| 30S ribosomal protein S4 [Haemophilus parainfluenzae ATCC 33392] Length = 206 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|22127884|ref|NP_671307.1| 30S ribosomal protein S4 [Yersinia pestis KIM 10] gi|45440091|ref|NP_991630.1| 30S ribosomal protein S4 [Yersinia pestis biovar Microtus str. 91001] gi|51597964|ref|YP_072155.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 32953] gi|108809231|ref|YP_653147.1| 30S ribosomal protein S4 [Yersinia pestis Antiqua] gi|108813996|ref|YP_649763.1| 30S ribosomal protein S4 [Yersinia pestis Nepal516] gi|123444074|ref|YP_001008044.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145597474|ref|YP_001161549.1| 30S ribosomal protein S4 [Yersinia pestis Pestoides F] gi|150260719|ref|ZP_01917447.1| 30S ribosomal protein S4 [Yersinia pestis CA88-4125] gi|153947510|ref|YP_001402839.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 31758] gi|162420100|ref|YP_001605196.1| 30S ribosomal protein S4 [Yersinia pestis Angola] gi|165927897|ref|ZP_02223729.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. F1991016] gi|166010539|ref|ZP_02231437.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166213178|ref|ZP_02239213.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. B42003004] gi|167398630|ref|ZP_02304154.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419283|ref|ZP_02311036.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425684|ref|ZP_02317437.1| ribosomal protein S4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022568|ref|YP_001719073.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis YPIII] gi|186897160|ref|YP_001874272.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis PB1/+] gi|218927439|ref|YP_002345314.1| 30S ribosomal protein S4 [Yersinia pestis CO92] gi|229836285|ref|ZP_04456452.1| 30S ribosomal subunit protein S4 [Yersinia pestis Pestoides A] gi|229840091|ref|ZP_04460250.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842173|ref|ZP_04462328.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. India 195] gi|229904527|ref|ZP_04519638.1| 30S ribosomal subunit protein S4 [Yersinia pestis Nepal516] gi|238752667|ref|ZP_04614138.1| 30S ribosomal protein S4 [Yersinia rohdei ATCC 43380] gi|238754196|ref|ZP_04615554.1| 30S ribosomal protein S4 [Yersinia ruckeri ATCC 29473] gi|238758784|ref|ZP_04619958.1| 30S ribosomal protein S4 [Yersinia aldovae ATCC 35236] gi|238783187|ref|ZP_04627213.1| 30S ribosomal protein S4 [Yersinia bercovieri ATCC 43970] gi|238797220|ref|ZP_04640721.1| 30S ribosomal protein S4 [Yersinia mollaretii ATCC 43969] gi|270488255|ref|ZP_06205329.1| ribosomal protein S4 [Yersinia pestis KIM D27] gi|294502308|ref|YP_003566370.1| 30S ribosomal protein S4 [Yersinia pestis Z176003] gi|332163237|ref|YP_004299814.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|26399435|sp|Q8ZJ88|RS4_YERPE RecName: Full=30S ribosomal protein S4 gi|61215490|sp|Q664U5|RS4_YERPS RecName: Full=30S ribosomal protein S4 gi|123245525|sp|Q1C2X0|RS4_YERPA RecName: Full=30S ribosomal protein S4 gi|123372820|sp|Q1CCW7|RS4_YERPN RecName: Full=30S ribosomal protein S4 gi|152112273|sp|A1JS02|RS4_YERE8 RecName: Full=30S ribosomal protein S4 gi|171769160|sp|A7FNL1|RS4_YERP3 RecName: Full=30S ribosomal protein S4 gi|172044482|sp|A4TH14|RS4_YERPP RecName: Full=30S ribosomal protein S4 gi|226703313|sp|B2K513|RS4_YERPB RecName: Full=30S ribosomal protein S4 gi|226703314|sp|A9R917|RS4_YERPG RecName: Full=30S ribosomal protein S4 gi|226703315|sp|B1JJG9|RS4_YERPY RecName: Full=30S ribosomal protein S4 gi|21961020|gb|AAM87558.1|AE014003_16 30S ribosomal subunit protein S4 [Yersinia pestis KIM 10] gi|45434946|gb|AAS60507.1| 30S ribosomal protein S4 [Yersinia pestis biovar Microtus str. 91001] gi|51591246|emb|CAH22912.1| 30S ribosomal protein S4 [Yersinia pseudotuberculosis IP 32953] gi|108777644|gb|ABG20163.1| SSU ribosomal protein S4P [Yersinia pestis Nepal516] gi|108781144|gb|ABG15202.1| SSU ribosomal protein S4P [Yersinia pestis Antiqua] gi|115346050|emb|CAL18916.1| 30S ribosomal protein S4 [Yersinia pestis CO92] gi|122091035|emb|CAL13918.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145209170|gb|ABP38577.1| SSU ribosomal protein S4P [Yersinia pestis Pestoides F] gi|149290127|gb|EDM40204.1| 30S ribosomal protein S4 [Yersinia pestis CA88-4125] gi|152959005|gb|ABS46466.1| ribosomal protein S4 [Yersinia pseudotuberculosis IP 31758] gi|162352915|gb|ABX86863.1| ribosomal protein S4 [Yersinia pestis Angola] gi|165920173|gb|EDR37474.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. F1991016] gi|165990629|gb|EDR42930.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. E1979001] gi|166205476|gb|EDR49956.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. B42003004] gi|166963277|gb|EDR59298.1| ribosomal protein S4 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051134|gb|EDR62542.1| ribosomal protein S4 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055374|gb|EDR65168.1| ribosomal protein S4 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749102|gb|ACA66620.1| ribosomal protein S4 [Yersinia pseudotuberculosis YPIII] gi|186700186|gb|ACC90815.1| ribosomal protein S4 [Yersinia pseudotuberculosis PB1/+] gi|229678645|gb|EEO74750.1| 30S ribosomal subunit protein S4 [Yersinia pestis Nepal516] gi|229690483|gb|EEO82537.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. India 195] gi|229696457|gb|EEO86504.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706353|gb|EEO92360.1| 30S ribosomal subunit protein S4 [Yersinia pestis Pestoides A] gi|238703081|gb|EEP95624.1| 30S ribosomal protein S4 [Yersinia aldovae ATCC 35236] gi|238707692|gb|EEQ00052.1| 30S ribosomal protein S4 [Yersinia ruckeri ATCC 29473] gi|238709094|gb|EEQ01341.1| 30S ribosomal protein S4 [Yersinia rohdei ATCC 43380] gi|238715983|gb|EEQ07969.1| 30S ribosomal protein S4 [Yersinia bercovieri ATCC 43970] gi|238718857|gb|EEQ10672.1| 30S ribosomal protein S4 [Yersinia mollaretii ATCC 43969] gi|262360388|gb|ACY57109.1| 30S ribosomal protein S4 [Yersinia pestis D106004] gi|262364338|gb|ACY60895.1| 30S ribosomal protein S4 [Yersinia pestis D182038] gi|270336759|gb|EFA47536.1| ribosomal protein S4 [Yersinia pestis KIM D27] gi|294352767|gb|ADE63108.1| 30S ribosomal protein S4 [Yersinia pestis Z176003] gi|320013366|gb|ADV96937.1| 30S ribosomal subunit protein S4 [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325667467|gb|ADZ44111.1| 30S ribosomal protein S4 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861830|emb|CBX72001.1| 30S ribosomal protein S4 [Yersinia enterocolitica W22703] Length = 206 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 VKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|220935468|ref|YP_002514367.1| 30S ribosomal protein S4 [Thioalkalivibrio sp. HL-EbGR7] gi|254764620|sp|B8GV34|RS4_THISH RecName: Full=30S ribosomal protein S4 gi|219996778|gb|ACL73380.1| 30S ribosomal protein S4 [Thioalkalivibrio sp. HL-EbGR7] Length = 206 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR-------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG R+++ S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKGRGRSLDTKCKLDK---APGQHG-DRRARLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +K A R +G T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKLRRIYG-VLERQFRNYYKTASRMKGSTGENLLQLLERRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG++VNI SY+ + DV+ V++K+K+ + ++ LAE+ PE++ V+ Sbjct: 116 QLVSHKAIQVNGQAVNIASYQVQPSDVVAVREKAKKQVRIQDSLTLAEQFGFPEWVEVDT 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F IP + P + +LVVE YS+ Sbjct: 176 KKMEGVFKSIPERSE---LPAEINESLVVELYSK 206 >gi|225175647|ref|ZP_03729641.1| ribosomal protein S4 [Dethiobacter alkaliphilus AHT 1] gi|225168976|gb|EEG77776.1| ribosomal protein S4 [Dethiobacter alkaliphilus AHT 1] Length = 209 Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S + RR G L+ + K V+ R+Y PG HGQRR+ K S +GLQLR Sbjct: 1 MARYTGSVCRQCRREGLKLYLKGERCYTEKCAVDRRAYAPGQHGQRRRGKVSEYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E +F FKEADR +G T NL+ LESRLD +VYR F + ARQ Sbjct: 61 KQKARRTYG-VLESQFHKYFKEADRRKGITGENLLQILESRLDNVVYRMGFALSRPEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNGR V+I SY+ + DV+ V++ S+ + ++L + E+++V+ + Sbjct: 120 LVKHGHFTVNGRKVDIPSYQVRPDDVVAVREASRDKGRFKDLAELMRTQGTMEWVNVDRE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ +R+P+ + + + +L+VE YSR Sbjct: 180 NLAGKVLRLPTREE---IDIPIAEHLIVELYSR 209 >gi|258406160|ref|YP_003198902.1| 30S ribosomal protein S4 [Desulfohalobium retbaense DSM 5692] gi|257798387|gb|ACV69324.1| ribosomal protein S4 [Desulfohalobium retbaense DSM 5692] Length = 208 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK ++ RR GE L+ + K R+Y PG HG+ RK KPS + +QLR Sbjct: 1 MARYTESKCRLCRREGEKLFLKGDRCYTDKCAFERRAYPPGQHGRMRK-KPSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR+ FK+A+ +G T NL+ LE+RLD +VYR F + ARQ Sbjct: 60 KQKVRRLYG-ILENQFRNYFKKAEAQKGVTGTNLLRLLETRLDNVVYRLGFANSREQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR VNI S + +EGD IEV+++S+++ + EA + +A R PE++ V+ Sbjct: 119 LVRHGHFELNGRRVNIPSLQVREGDAIEVRERSRKVPAFQEAQEVIARRGCPEWLEVDSA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 P +DV +P + L+VE YS+ Sbjct: 179 AFKGAIKAQPQR-EDVTFP--INEQLIVELYSK 208 >gi|242237883|ref|YP_002986064.1| 30S ribosomal protein S4 [Dickeya dadantii Ech703] gi|242129940|gb|ACS84242.1| ribosomal protein S4 [Dickeya dadantii Ech703] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVGHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|85060232|ref|YP_455934.1| 30S ribosomal protein S4 [Sodalis glossinidius str. 'morsitans'] gi|123518718|sp|Q2NQP6|RS4_SODGM RecName: Full=30S ribosomal protein S4 gi|84780752|dbj|BAE75529.1| 30S ribosomal protein S4 [Sodalis glossinidius str. 'morsitans'] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVTPNDVVSIREKAKKQSRVRASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|91983994|ref|YP_567078.1| ribosomal protein S4 [Vitis vinifera] gi|122242803|sp|Q0ZJ18|RR4_VITVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|91701652|gb|ABE47536.1| ribosomal protein S4 [Vitis vinifera] Length = 201 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLNYVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAGNEQKSRALIQNVFDSSSHEELPKHLTLHPFQFKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSN---WVGLKINELLVVEYYSR 199 >gi|41323117|gb|AAR99788.1| small ribosomal protein 4 [Plagiochilion mayebarae] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKILKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSIITKNIDSFQKLKIPSHLTFDPTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LV E+YSR Sbjct: 177 NQMINR---EWIILKINELLVAEYYSR 200 >gi|26399184|sp|Q9M4B8|RR4_JAMAU RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017423|emb|CAB92136.1| small ribosomal protein 4 [Syzygiella autumnalis] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + S+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTFKSKSSFI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRFDMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD I ++ K K + + + + L ++ +P +++ + + Sbjct: 117 ISVNNGIVDIPSYNCEPGDTITIRNKQKSQSIITKNTNLFQKIKIPSHLTFDSTQLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|166092850|gb|ABY82378.1| ribosomal protein S4 [Silene integripetala] Length = 201 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|320540587|ref|ZP_08040237.1| 30S ribosomal subunit protein S4 [Serratia symbiotica str. Tucson] gi|320029518|gb|EFW11547.1| 30S ribosomal subunit protein S4 [Serratia symbiotica str. Tucson] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 LKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|318607721|emb|CBY29219.1| SSU ribosomal protein S4p (S9e) [Yersinia enterocolitica subsp. palearctica Y11] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 IKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|159161162|ref|YP_001542449.1| ribosomal protein S4 [Ceratophyllum demersum] gi|172048121|sp|A8SEA5|RR4_CERDE RecName: Full=30S ribosomal protein S4, chloroplastic gi|148508445|gb|ABQ81452.1| ribosomal protein S4 [Ceratophyllum demersum] gi|227481121|emb|CAP62500.1| ribosomal protein S4 [Ceratophyllum demersum] Length = 201 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P S G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----SPGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + ++ + +VP+++++ A Sbjct: 116 ILVNGRIVDIPSYRCKPQDIITTRDEQRSRALIQKSIDSSPHEEVPKHLTLYPFQYKALV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NKIIDSQ---WIGLKINELLVVEYYSR 199 >gi|66990668|emb|CAI29112.1| small ribosomal protein 4 [Plagiochila teysmannii] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNITSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWIDLKINELLVVEYYSR 200 >gi|317494318|ref|ZP_07952732.1| ribosomal protein S4 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917568|gb|EFV38913.1| ribosomal protein S4 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI SY+ DV+ V++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAVVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 176 AKMEGVFKRNPER---SDLSADINEHLIVELYSK 206 >gi|308048015|ref|YP_003911581.1| 30S ribosomal protein S4P [Ferrimonas balearica DSM 9799] gi|307630205|gb|ADN74507.1| SSU ribosomal protein S4P [Ferrimonas balearica DSM 9799] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R+++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---VPGQHG-ARRARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LESRLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLESRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNGR VNI S+ DVI V++K+++ A + A ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIKVNGRVVNIPSFSVSPNDVIAVREKAQKQARIKGALEVAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R+P + L+VE YS+ Sbjct: 176 AKMEGTFKRLPER---SDLSADINEQLIVELYSK 206 >gi|239582581|dbj|BAH70342.1| ribosomal protein S4 [Cercidiphyllum japonicum] gi|239582602|dbj|BAH70347.1| ribosomal protein S4 [Cercidiphyllum japonicum] gi|239582623|dbj|BAH70352.1| ribosomal protein S4 [Cercidiphyllum japonicum] Length = 201 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNH+H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHKH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG VNI SYRCK D+I + + K A + + ++P++++++ Sbjct: 116 ILVNGGIVNIPSYRCKPRDIITARDEQKSRALIQNYLDSSPHEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|116628655|ref|YP_821274.1| 30S ribosomal protein S4 [Streptococcus thermophilus LMD-9] gi|90101730|sp|Q5LXK5|RS4_STRT1 RecName: Full=30S ribosomal protein S4 gi|90101731|sp|Q5M255|RS4_STRT2 RecName: Full=30S ribosomal protein S4 gi|122266751|sp|Q03I94|RS4_STRTD RecName: Full=30S ribosomal protein S4 gi|116101932|gb|ABJ67078.1| SSU ribosomal protein S4P [Streptococcus thermophilus LMD-9] gi|312279309|gb|ADQ63966.1| 30S ribosomal protein S4 [Streptococcus thermophilus ND03] Length = 203 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGFSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LSEKQFRNLFVQATKVKGGTLGFNFMILLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-ATIGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|325294423|ref|YP_004280937.1| ribosomal protein S4 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064871|gb|ADY72878.1| ribosomal protein S4 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 208 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 128/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + K +I RR+G N++ + KS ++ R Y PG HG+ R+ K SY+G QL Sbjct: 1 MGRYTGPKWRIARRLGVNIYVGEEKSQKGKSILDRRPYPPGQHGRSRR-KISYYGRQLME 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG I E +F+ ++ A+R RG T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKVKYYYG-IREGQFKRFYEMAERMRGQTGENLLKLLESRLDNVVYRLGFGKSHRHARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+LVNG+ V+ SY K GD++EVK+KS+++ + E +LA+ R +P ++ ++ + Sbjct: 119 LVVHGHILVNGKKVDRPSYLVKPGDIVEVKEKSREIPQIKEGIELAQRRGIPSWLELDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N P+ + + ++ +L+VE YS+ Sbjct: 179 NFKGVVKAEPTREE---IEIPVEEHLIVELYSK 208 >gi|56752482|ref|YP_173183.1| 30S ribosomal protein S4 [Synechococcus elongatus PCC 6301] gi|81300296|ref|YP_400504.1| 30S ribosomal protein S4 [Synechococcus elongatus PCC 7942] gi|61215367|sp|Q5MZ57|RS4_SYNP6 RecName: Full=30S ribosomal protein S4 gi|123556802|sp|Q31N52|RS4_SYNE7 RecName: Full=30S ribosomal protein S4 gi|56687441|dbj|BAD80663.1| 30S ribosomal protein S4 [Synechococcus elongatus PCC 6301] gi|81169177|gb|ABB57517.1| SSU ribosomal protein S4P [Synechococcus elongatus PCC 7942] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 113/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKAA--RRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A R +G T NL+ LE RLD +V+R F PTI ARQ VNH H Sbjct: 58 NYG-LSERQLVRYVKKARRMQGSTGTNLLQLLEMRLDNLVFRLGFAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY C+ G+VI V+Q+ V + +VP ++ + + + A Sbjct: 117 VTVNGRVVDIASYNCRPGEVIGVRQREASRKLVTANLEYPGLANVPVHLDFDKNKLEAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 TGA---CEREWVALQINELLVVEYYSR 200 >gi|15803823|ref|NP_289857.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 EDL933] gi|15833415|ref|NP_312188.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. Sakai] gi|16131175|ref|NP_417755.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] gi|26249881|ref|NP_755921.1| 30S ribosomal protein S4 [Escherichia coli CFT073] gi|74313815|ref|YP_312234.1| 30S ribosomal protein S4 [Shigella sonnei Ss046] gi|82545659|ref|YP_409606.1| 30S ribosomal protein S4 [Shigella boydii Sb227] gi|82778592|ref|YP_404941.1| 30S ribosomal protein S4 [Shigella dysenteriae Sd197] gi|89110714|ref|AP_004494.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. W3110] gi|91212723|ref|YP_542709.1| 30S ribosomal protein S4 [Escherichia coli UTI89] gi|110643535|ref|YP_671265.1| 30S ribosomal protein S4 [Escherichia coli 536] gi|110807144|ref|YP_690664.1| 30S ribosomal protein S4 [Shigella flexneri 5 str. 8401] gi|117625578|ref|YP_858901.1| 30S ribosomal protein S4 [Escherichia coli APEC O1] gi|157148871|ref|YP_001456190.1| 30S ribosomal protein S4 [Citrobacter koseri ATCC BAA-895] gi|157156792|ref|YP_001464764.1| 30S ribosomal protein S4 [Escherichia coli E24377A] gi|157162770|ref|YP_001460088.1| 30S ribosomal protein S4 [Escherichia coli HS] gi|161486375|ref|NP_839574.2| 30S ribosomal protein S4 [Shigella flexneri 2a str. 2457T] gi|168752255|ref|ZP_02777277.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4113] gi|168758524|ref|ZP_02783531.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4401] gi|168764979|ref|ZP_02789986.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4501] gi|168769158|ref|ZP_02794165.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4486] gi|168777846|ref|ZP_02802853.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4196] gi|168783864|ref|ZP_02808871.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4076] gi|168786186|ref|ZP_02811193.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC869] gi|168802725|ref|ZP_02827732.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC508] gi|170018468|ref|YP_001723422.1| 30S ribosomal protein S4 [Escherichia coli ATCC 8739] gi|170082816|ref|YP_001732136.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. DH10B] gi|170683332|ref|YP_001745558.1| 30S ribosomal protein S4 [Escherichia coli SMS-3-5] gi|170769606|ref|ZP_02904059.1| ribosomal protein S4 [Escherichia albertii TW07627] gi|187732648|ref|YP_001881981.1| 30S ribosomal protein S4 [Shigella boydii CDC 3083-94] gi|188495865|ref|ZP_03003135.1| ribosomal protein S4 [Escherichia coli 53638] gi|191174447|ref|ZP_03035948.1| ribosomal protein S4 [Escherichia coli F11] gi|193066487|ref|ZP_03047531.1| ribosomal protein S4 [Escherichia coli E22] gi|193071545|ref|ZP_03052454.1| ribosomal protein S4 [Escherichia coli E110019] gi|194430280|ref|ZP_03062775.1| ribosomal protein S4 [Escherichia coli B171] gi|194435081|ref|ZP_03067319.1| ribosomal protein S4 [Shigella dysenteriae 1012] gi|194439993|ref|ZP_03072051.1| ribosomal protein S4 [Escherichia coli 101-1] gi|195939844|ref|ZP_03085226.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. EC4024] gi|208806540|ref|ZP_03248877.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4206] gi|208812921|ref|ZP_03254250.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4045] gi|208819506|ref|ZP_03259826.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4042] gi|209396300|ref|YP_002272752.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4115] gi|209920762|ref|YP_002294846.1| 30S ribosomal protein S4 [Escherichia coli SE11] gi|215488596|ref|YP_002331027.1| 30S ribosomal protein S4 [Escherichia coli O127:H6 str. E2348/69] gi|217325090|ref|ZP_03441174.1| ribosomal protein S4 [Escherichia coli O157:H7 str. TW14588] gi|218550572|ref|YP_002384363.1| 30S ribosomal protein S4 [Escherichia fergusonii ATCC 35469] gi|218555854|ref|YP_002388767.1| 30S ribosomal protein S4 [Escherichia coli IAI1] gi|218560358|ref|YP_002393271.1| 30S ribosomal protein S4 [Escherichia coli S88] gi|218691583|ref|YP_002399795.1| 30S ribosomal protein S4 [Escherichia coli ED1a] gi|218696989|ref|YP_002404656.1| 30S ribosomal protein S4 [Escherichia coli 55989] gi|218702059|ref|YP_002409688.1| 30S ribosomal protein S4 [Escherichia coli IAI39] gi|218706904|ref|YP_002414423.1| 30S ribosomal protein S4 [Escherichia coli UMN026] gi|227883428|ref|ZP_04001233.1| 30S ribosomal protein S4 [Escherichia coli 83972] gi|237703026|ref|ZP_04533507.1| 30S ribosomal subunit protein S4 [Escherichia sp. 3_2_53FAA] gi|238902387|ref|YP_002928183.1| 30S ribosomal subunit protein S4 [Escherichia coli BW2952] gi|253771880|ref|YP_003034711.1| 30S ribosomal protein S4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038457|ref|ZP_04872513.1| ribosomal protein S4 [Escherichia sp. 1_1_43] gi|254163224|ref|YP_003046332.1| 30S ribosomal protein S4 [Escherichia coli B str. REL606] gi|254795233|ref|YP_003080070.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. TW14359] gi|256020655|ref|ZP_05434520.1| 30S ribosomal protein S4 [Shigella sp. D9] gi|256025976|ref|ZP_05439841.1| 30S ribosomal protein S4 [Escherichia sp. 4_1_40B] gi|260846094|ref|YP_003223872.1| 30S ribosomal subunit protein S4 [Escherichia coli O103:H2 str. 12009] gi|260857417|ref|YP_003231308.1| 30S ribosomal subunit protein S4 [Escherichia coli O26:H11 str. 11368] gi|260870039|ref|YP_003236441.1| 30S ribosomal subunit protein S4 [Escherichia coli O111:H- str. 11128] gi|261224601|ref|ZP_05938882.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. FRIK2000] gi|261254505|ref|ZP_05947038.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. FRIK966] gi|291284654|ref|YP_003501472.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. CB9615] gi|293406893|ref|ZP_06650817.1| rpsD [Escherichia coli FVEC1412] gi|293412715|ref|ZP_06655383.1| 30S ribosomal protein S4 [Escherichia coli B354] gi|293416715|ref|ZP_06659352.1| 30S ribosomal protein S4 [Escherichia coli B185] gi|293453615|ref|ZP_06664034.1| 30S ribosomal protein S4 [Escherichia coli B088] gi|297517820|ref|ZP_06936206.1| 30S ribosomal protein S4 [Escherichia coli OP50] gi|298382634|ref|ZP_06992229.1| small subunit ribosomal protein S4 [Escherichia coli FVEC1302] gi|300815493|ref|ZP_07095718.1| ribosomal protein S4 [Escherichia coli MS 107-1] gi|300822900|ref|ZP_07103036.1| ribosomal protein S4 [Escherichia coli MS 119-7] gi|300896645|ref|ZP_07115161.1| ribosomal protein S4 [Escherichia coli MS 198-1] gi|300903545|ref|ZP_07121467.1| ribosomal protein S4 [Escherichia coli MS 84-1] gi|300918271|ref|ZP_07134875.1| ribosomal protein S4 [Escherichia coli MS 115-1] gi|300921894|ref|ZP_07138050.1| ribosomal protein S4 [Escherichia coli MS 182-1] gi|300932190|ref|ZP_07147469.1| ribosomal protein S4 [Escherichia coli MS 187-1] gi|300935295|ref|ZP_07150305.1| ribosomal protein S4 [Escherichia coli MS 21-1] gi|300946519|ref|ZP_07160784.1| ribosomal protein S4 [Escherichia coli MS 116-1] gi|300954829|ref|ZP_07167255.1| ribosomal protein S4 [Escherichia coli MS 175-1] gi|300973976|ref|ZP_07172383.1| ribosomal protein S4 [Escherichia coli MS 200-1] gi|300979869|ref|ZP_07174745.1| ribosomal protein S4 [Escherichia coli MS 45-1] gi|301018838|ref|ZP_07183082.1| ribosomal protein S4 [Escherichia coli MS 69-1] gi|301046068|ref|ZP_07193246.1| ribosomal protein S4 [Escherichia coli MS 185-1] gi|301305506|ref|ZP_07211598.1| ribosomal protein S4 [Escherichia coli MS 124-1] gi|301325136|ref|ZP_07218670.1| ribosomal protein S4 [Escherichia coli MS 78-1] gi|301643883|ref|ZP_07243914.1| ribosomal protein S4 [Escherichia coli MS 146-1] gi|306816361|ref|ZP_07450499.1| 30S ribosomal protein S4 [Escherichia coli NC101] gi|307139979|ref|ZP_07499335.1| 30S ribosomal protein S4 [Escherichia coli H736] gi|307315125|ref|ZP_07594708.1| ribosomal protein S4 [Escherichia coli W] gi|309794572|ref|ZP_07688994.1| ribosomal protein S4 [Escherichia coli MS 145-7] gi|331643992|ref|ZP_08345121.1| ribosomal protein S4 [Escherichia coli H736] gi|331649093|ref|ZP_08350179.1| ribosomal protein S4 [Escherichia coli M605] gi|331654889|ref|ZP_08355888.1| ribosomal protein S4 [Escherichia coli M718] gi|331659586|ref|ZP_08360524.1| ribosomal protein S4 [Escherichia coli TA206] gi|331664909|ref|ZP_08365810.1| ribosomal protein S4 [Escherichia coli TA143] gi|331670125|ref|ZP_08370964.1| ribosomal protein S4 [Escherichia coli TA271] gi|331674802|ref|ZP_08375559.1| ribosomal protein S4 [Escherichia coli TA280] gi|331679365|ref|ZP_08380035.1| ribosomal protein S4 [Escherichia coli H591] gi|331684938|ref|ZP_08385524.1| ribosomal protein S4 [Escherichia coli H299] gi|62288978|sp|P0A7V8|RS4_ECOLI RecName: Full=30S ribosomal protein S4 gi|62288979|sp|P0A7V9|RS4_ECOL6 RecName: Full=30S ribosomal protein S4 gi|62288980|sp|P0A7W0|RS4_ECO57 RecName: Full=30S ribosomal protein S4 gi|90101715|sp|Q31VY0|RS4_SHIBS RecName: Full=30S ribosomal protein S4 gi|90101716|sp|Q32B55|RS4_SHIDS RecName: Full=30S ribosomal protein S4 gi|90101726|sp|Q3YWW3|RS4_SHISS RecName: Full=30S ribosomal protein S4 gi|122957945|sp|Q0TCG5|RS4_ECOL5 RecName: Full=30S ribosomal protein S4 gi|123047859|sp|Q0T006|RS4_SHIF8 RecName: Full=30S ribosomal protein S4 gi|123387796|sp|Q1R636|RS4_ECOUT RecName: Full=30S ribosomal protein S4 gi|152060947|sp|A1AGI7|RS4_ECOK1 RecName: Full=30S ribosomal protein S4 gi|171855222|sp|A7ZSI5|RS4_ECO24 RecName: Full=30S ribosomal protein S4 gi|172044361|sp|A8A5A1|RS4_ECOHS RecName: Full=30S ribosomal protein S4 gi|172045593|sp|A8AQJ1|RS4_CITK8 RecName: Full=30S ribosomal protein S4 gi|189045379|sp|B1IQ03|RS4_ECOLC RecName: Full=30S ribosomal protein S4 gi|226695077|sp|B2U2R5|RS4_SHIB3 RecName: Full=30S ribosomal protein S4 gi|226699056|sp|B7NLL6|RS4_ECO7I RecName: Full=30S ribosomal protein S4 gi|226699057|sp|B7M102|RS4_ECO8A RecName: Full=30S ribosomal protein S4 gi|226699058|sp|B1X6E8|RS4_ECODH RecName: Full=30S ribosomal protein S4 gi|226699059|sp|B7NDR8|RS4_ECOLU RecName: Full=30S ribosomal protein S4 gi|226699060|sp|B6I210|RS4_ECOSE RecName: Full=30S ribosomal protein S4 gi|226699061|sp|B1LHB0|RS4_ECOSM RecName: Full=30S ribosomal protein S4 gi|226699064|sp|B7LRR3|RS4_ESCF3 RecName: Full=30S ribosomal protein S4 gi|226732180|sp|B7MCR2|RS4_ECO45 RecName: Full=30S ribosomal protein S4 gi|226732181|sp|B5YT15|RS4_ECO5E RecName: Full=30S ribosomal protein S4 gi|254764587|sp|B7UK20|RS4_ECO27 RecName: Full=30S ribosomal protein S4 gi|254764588|sp|B7LHZ8|RS4_ECO55 RecName: Full=30S ribosomal protein S4 gi|254764589|sp|B7N181|RS4_ECO81 RecName: Full=30S ribosomal protein S4 gi|259495276|sp|C4ZUF1|RS4_ECOBW RecName: Full=30S ribosomal protein S4 gi|116666551|pdb|1VS5|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|116666603|pdb|1VS7|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|256032366|pdb|3E1A|R Chain R, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre-Accommodation State gi|256032423|pdb|3E1C|R Chain R, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Post-Accommodation State gi|257097325|pdb|3I1M|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097377|pdb|3I1O|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097429|pdb|3I1Q|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097483|pdb|3I1S|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097537|pdb|3I1Z|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|257097592|pdb|3I21|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting gi|290560310|pdb|3KC4|D Chain D, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3kcr gi|308198690|pdb|3OR9|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|308198711|pdb|3ORA|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|326634282|pdb|3IZV|H Chain H, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Small Subunit Of A Ribosome Programmed With A Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu gi|326634307|pdb|3IZW|H Chain H, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding.This Entry Contains The Small Subunit Of A Ribosome Programmed With A Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu gi|12517925|gb|AAG58417.1|AE005556_10 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. EDL933] gi|26110309|gb|AAN82495.1|AE016767_255 30S ribosomal protein S4 [Escherichia coli CFT073] gi|42798|emb|CAA26394.1| unnamed protein product [Escherichia coli] gi|606231|gb|AAA58094.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] gi|1789691|gb|AAC76321.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. MG1655] gi|13363634|dbj|BAB37584.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. Sakai] gi|73857292|gb|AAZ89999.1| 30S ribosomal subunit protein S4 [Shigella sonnei Ss046] gi|81242740|gb|ABB63450.1| 30S ribosomal subunit protein S4 [Shigella dysenteriae Sd197] gi|81247070|gb|ABB67778.1| 30S ribosomal subunit protein S4 [Shigella boydii Sb227] gi|85676745|dbj|BAE77995.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K12 substr. W3110] gi|91074297|gb|ABE09178.1| 30S ribosomal subunit protein S4 [Escherichia coli UTI89] gi|110345127|gb|ABG71364.1| 30S ribosomal protein S4 [Escherichia coli 536] gi|110616692|gb|ABF05359.1| 30S ribosomal subunit protein S4 [Shigella flexneri 5 str. 8401] gi|115514702|gb|ABJ02777.1| 30S ribosomal subunit protein S4 [Escherichia coli APEC O1] gi|157068450|gb|ABV07705.1| ribosomal protein S4 [Escherichia coli HS] gi|157078822|gb|ABV18530.1| ribosomal protein S4 [Escherichia coli E24377A] gi|157086076|gb|ABV15754.1| hypothetical protein CKO_04709 [Citrobacter koseri ATCC BAA-895] gi|169753396|gb|ACA76095.1| ribosomal protein S4 [Escherichia coli ATCC 8739] gi|169890651|gb|ACB04358.1| 30S ribosomal subunit protein S4 [Escherichia coli str. K-12 substr. DH10B] gi|170121663|gb|EDS90594.1| ribosomal protein S4 [Escherichia albertii TW07627] gi|170521050|gb|ACB19228.1| ribosomal protein S4 [Escherichia coli SMS-3-5] gi|187429640|gb|ACD08914.1| ribosomal protein S4 [Shigella boydii CDC 3083-94] gi|187767007|gb|EDU30851.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4196] gi|188013855|gb|EDU51977.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4113] gi|188491064|gb|EDU66167.1| ribosomal protein S4 [Escherichia coli 53638] gi|188998873|gb|EDU67859.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4076] gi|189354671|gb|EDU73090.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4401] gi|189361855|gb|EDU80274.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4486] gi|189365129|gb|EDU83545.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4501] gi|189374088|gb|EDU92504.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC869] gi|189375351|gb|EDU93767.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC508] gi|190905255|gb|EDV64893.1| ribosomal protein S4 [Escherichia coli F11] gi|192925868|gb|EDV80518.1| ribosomal protein S4 [Escherichia coli E22] gi|192955133|gb|EDV85627.1| ribosomal protein S4 [Escherichia coli E110019] gi|194411669|gb|EDX27996.1| ribosomal protein S4 [Escherichia coli B171] gi|194416688|gb|EDX32819.1| ribosomal protein S4 [Shigella dysenteriae 1012] gi|194421045|gb|EDX37074.1| ribosomal protein S4 [Escherichia coli 101-1] gi|208726341|gb|EDZ75942.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4206] gi|208734198|gb|EDZ82885.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4045] gi|208739629|gb|EDZ87311.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4042] gi|209157700|gb|ACI35133.1| ribosomal protein S4 [Escherichia coli O157:H7 str. EC4115] gi|209757278|gb|ACI76951.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757280|gb|ACI76952.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757282|gb|ACI76953.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757284|gb|ACI76954.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209757286|gb|ACI76955.1| 30S ribosomal subunit protein S4 [Escherichia coli] gi|209914021|dbj|BAG79095.1| 30S ribosomal protein S4 [Escherichia coli SE11] gi|215266668|emb|CAS11107.1| 30S ribosomal subunit protein S4 [Escherichia coli O127:H6 str. E2348/69] gi|217321311|gb|EEC29735.1| ribosomal protein S4 [Escherichia coli O157:H7 str. TW14588] gi|218353721|emb|CAU99998.1| 30S ribosomal subunit protein S4 [Escherichia coli 55989] gi|218358113|emb|CAQ90760.1| 30S ribosomal subunit protein S4 [Escherichia fergusonii ATCC 35469] gi|218362622|emb|CAR00248.1| 30S ribosomal subunit protein S4 [Escherichia coli IAI1] gi|218367127|emb|CAR04901.1| 30S ribosomal subunit protein S4 [Escherichia coli S88] gi|218372045|emb|CAR19905.1| 30S ribosomal subunit protein S4 [Escherichia coli IAI39] gi|218429147|emb|CAR10099.2| 30S ribosomal subunit protein S4 [Escherichia coli ED1a] gi|218434001|emb|CAR14918.1| 30S ribosomal subunit protein S4 [Escherichia coli UMN026] gi|222035005|emb|CAP77748.1| 30S ribosomal protein S4 [Escherichia coli LF82] gi|226838963|gb|EEH70986.1| ribosomal protein S4 [Escherichia sp. 1_1_43] gi|226902290|gb|EEH88549.1| 30S ribosomal subunit protein S4 [Escherichia sp. 3_2_53FAA] gi|227839572|gb|EEJ50038.1| 30S ribosomal protein S4 [Escherichia coli 83972] gi|238859799|gb|ACR61797.1| 30S ribosomal subunit protein S4 [Escherichia coli BW2952] gi|242378823|emb|CAQ33615.1| 30S ribosomal subunit protein S4, subunit of 30S ribosomal subunit and ribosome [Escherichia coli BL21(DE3)] gi|253322924|gb|ACT27526.1| ribosomal protein S4 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975125|gb|ACT40796.1| 30S ribosomal protein S4 [Escherichia coli B str. REL606] gi|253979281|gb|ACT44951.1| 30S ribosomal protein S4 [Escherichia coli BL21(DE3)] gi|254594633|gb|ACT73994.1| 30S ribosomal subunit protein S4 [Escherichia coli O157:H7 str. TW14359] gi|257756066|dbj|BAI27568.1| 30S ribosomal subunit protein S4 [Escherichia coli O26:H11 str. 11368] gi|257761241|dbj|BAI32738.1| 30S ribosomal subunit protein S4 [Escherichia coli O103:H2 str. 12009] gi|257766395|dbj|BAI37890.1| 30S ribosomal subunit protein S4 [Escherichia coli O111:H- str. 11128] gi|260447685|gb|ACX38107.1| ribosomal protein S4 [Escherichia coli DH1] gi|281180331|dbj|BAI56661.1| 30S ribosomal protein S4 [Escherichia coli SE15] gi|281602661|gb|ADA75645.1| 30S ribosomal protein S4 [Shigella flexneri 2002017] gi|284923302|emb|CBG36396.1| 30S ribosomal subunit protein S4 [Escherichia coli 042] gi|290764527|gb|ADD58488.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. CB9615] gi|291321741|gb|EFE61172.1| 30S ribosomal protein S4 [Escherichia coli B088] gi|291425704|gb|EFE98738.1| rpsD [Escherichia coli FVEC1412] gi|291431291|gb|EFF04276.1| 30S ribosomal protein S4 [Escherichia coli B185] gi|291468362|gb|EFF10855.1| 30S ribosomal protein S4 [Escherichia coli B354] gi|294491877|gb|ADE90633.1| ribosomal protein S4 [Escherichia coli IHE3034] gi|298276470|gb|EFI17988.1| small subunit ribosomal protein S4 [Escherichia coli FVEC1302] gi|300301894|gb|EFJ58279.1| ribosomal protein S4 [Escherichia coli MS 185-1] gi|300308986|gb|EFJ63506.1| ribosomal protein S4 [Escherichia coli MS 200-1] gi|300318229|gb|EFJ68013.1| ribosomal protein S4 [Escherichia coli MS 175-1] gi|300359476|gb|EFJ75346.1| ribosomal protein S4 [Escherichia coli MS 198-1] gi|300399548|gb|EFJ83086.1| ribosomal protein S4 [Escherichia coli MS 69-1] gi|300404418|gb|EFJ87956.1| ribosomal protein S4 [Escherichia coli MS 84-1] gi|300409380|gb|EFJ92918.1| ribosomal protein S4 [Escherichia coli MS 45-1] gi|300414532|gb|EFJ97842.1| ribosomal protein S4 [Escherichia coli MS 115-1] gi|300421742|gb|EFK05053.1| ribosomal protein S4 [Escherichia coli MS 182-1] gi|300453765|gb|EFK17385.1| ribosomal protein S4 [Escherichia coli MS 116-1] gi|300459451|gb|EFK22944.1| ribosomal protein S4 [Escherichia coli MS 21-1] gi|300460014|gb|EFK23507.1| ribosomal protein S4 [Escherichia coli MS 187-1] gi|300524666|gb|EFK45735.1| ribosomal protein S4 [Escherichia coli MS 119-7] gi|300532385|gb|EFK53447.1| ribosomal protein S4 [Escherichia coli MS 107-1] gi|300839201|gb|EFK66961.1| ribosomal protein S4 [Escherichia coli MS 124-1] gi|300848015|gb|EFK75775.1| ribosomal protein S4 [Escherichia coli MS 78-1] gi|301077786|gb|EFK92592.1| ribosomal protein S4 [Escherichia coli MS 146-1] gi|305850757|gb|EFM51214.1| 30S ribosomal protein S4 [Escherichia coli NC101] gi|306905474|gb|EFN36009.1| ribosomal protein S4 [Escherichia coli W] gi|307555384|gb|ADN48159.1| 30S ribosomal subunit protein S4 [Escherichia coli ABU 83972] gi|307628331|gb|ADN72635.1| 30S ribosomal protein S4 [Escherichia coli UM146] gi|308121622|gb|EFO58884.1| ribosomal protein S4 [Escherichia coli MS 145-7] gi|309703708|emb|CBJ03049.1| 30S ribosomal subunit protein S4 [Escherichia coli ETEC H10407] gi|312947847|gb|ADR28674.1| 30S ribosomal protein S4 [Escherichia coli O83:H1 str. NRG 857C] gi|315062588|gb|ADT76915.1| 30S ribosomal subunit protein S4 [Escherichia coli W] gi|315137871|dbj|BAJ45030.1| 30S ribosomal protein S4 [Escherichia coli DH1] gi|315255880|gb|EFU35848.1| ribosomal protein S4 [Escherichia coli MS 85-1] gi|315284628|gb|EFU44073.1| ribosomal protein S4 [Escherichia coli MS 110-3] gi|315292386|gb|EFU51738.1| ribosomal protein S4 [Escherichia coli MS 153-1] gi|315298595|gb|EFU57850.1| ribosomal protein S4 [Escherichia coli MS 16-3] gi|320182706|gb|EFW57592.1| SSU ribosomal protein S4p (S9e) [Shigella boydii ATCC 9905] gi|320639601|gb|EFX09195.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. G5101] gi|320645099|gb|EFX14115.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. 493-89] gi|320650410|gb|EFX18876.1| 30S ribosomal protein S4 [Escherichia coli O157:H- str. H 2687] gi|320655935|gb|EFX23855.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661387|gb|EFX28802.1| 30S ribosomal protein S4 [Escherichia coli O55:H7 str. USDA 5905] gi|320666409|gb|EFX33392.1| 30S ribosomal protein S4 [Escherichia coli O157:H7 str. LSU-61] gi|323162975|gb|EFZ48810.1| ribosomal protein S4 [Escherichia coli E128010] gi|323173932|gb|EFZ59560.1| ribosomal protein S4 [Escherichia coli LT-68] gi|323189099|gb|EFZ74383.1| ribosomal protein S4 [Escherichia coli RN587/1] gi|323376825|gb|ADX49093.1| ribosomal protein S4 [Escherichia coli KO11] gi|323934505|gb|EGB30913.1| ribosomal protein S4 [Escherichia coli E1520] gi|323939282|gb|EGB35494.1| ribosomal protein S4 [Escherichia coli E482] gi|323944283|gb|EGB40359.1| ribosomal protein S4 [Escherichia coli H120] gi|323950210|gb|EGB46092.1| ribosomal protein S4 [Escherichia coli H252] gi|323954581|gb|EGB50364.1| ribosomal protein S4 [Escherichia coli H263] gi|323959553|gb|EGB55206.1| ribosomal protein S4 [Escherichia coli H489] gi|323966258|gb|EGB61693.1| ribosomal protein S4 [Escherichia coli M863] gi|323970100|gb|EGB65374.1| ribosomal protein S4 [Escherichia coli TA007] gi|323974751|gb|EGB69864.1| ribosomal protein S4 [Escherichia coli TW10509] gi|324009031|gb|EGB78250.1| ribosomal protein S4 [Escherichia coli MS 57-2] gi|324014913|gb|EGB84132.1| ribosomal protein S4 [Escherichia coli MS 60-1] gi|324017885|gb|EGB87104.1| ribosomal protein S4 [Escherichia coli MS 117-3] gi|324111975|gb|EGC05954.1| ribosomal protein S4 [Escherichia fergusonii B253] gi|324116314|gb|EGC10234.1| ribosomal protein S4 [Escherichia coli E1167] gi|327250944|gb|EGE62637.1| ribosomal protein S4 [Escherichia coli STEC_7v] gi|331036286|gb|EGI08512.1| ribosomal protein S4 [Escherichia coli H736] gi|331041591|gb|EGI13735.1| ribosomal protein S4 [Escherichia coli M605] gi|331046904|gb|EGI18982.1| ribosomal protein S4 [Escherichia coli M718] gi|331052801|gb|EGI24834.1| ribosomal protein S4 [Escherichia coli TA206] gi|331057419|gb|EGI29405.1| ribosomal protein S4 [Escherichia coli TA143] gi|331062187|gb|EGI34107.1| ribosomal protein S4 [Escherichia coli TA271] gi|331067711|gb|EGI39109.1| ribosomal protein S4 [Escherichia coli TA280] gi|331072537|gb|EGI43862.1| ribosomal protein S4 [Escherichia coli H591] gi|331077309|gb|EGI48521.1| ribosomal protein S4 [Escherichia coli H299] gi|332090406|gb|EGI95504.1| ribosomal protein S4 [Shigella boydii 3594-74] gi|332104203|gb|EGJ07549.1| 30S ribosomal subunit protein S4 [Shigella sp. D9] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRKPER---SDLSADINEHLIVELYSK 206 >gi|152972204|ref|YP_001337350.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206575742|ref|YP_002236302.1| ribosomal protein S4 [Klebsiella pneumoniae 342] gi|238896793|ref|YP_002921538.1| 30S ribosomal protein S4 [Klebsiella pneumoniae NTUH-K2044] gi|262045155|ref|ZP_06018182.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288933290|ref|YP_003437349.1| ribosomal protein S4 [Klebsiella variicola At-22] gi|290512092|ref|ZP_06551460.1| 30S ribosomal protein S4 [Klebsiella sp. 1_1_55] gi|330002271|ref|ZP_08304265.1| ribosomal protein S4 [Klebsiella sp. MS 92-3] gi|172052444|sp|A6TEU9|RS4_KLEP7 RecName: Full=30S ribosomal protein S4 gi|226699076|sp|B5XNB5|RS4_KLEP3 RecName: Full=30S ribosomal protein S4 gi|150957053|gb|ABR79083.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206564800|gb|ACI06576.1| ribosomal protein S4 [Klebsiella pneumoniae 342] gi|238549120|dbj|BAH65471.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037475|gb|EEW38719.1| 30S ribosomal protein S4 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888019|gb|ADC56337.1| ribosomal protein S4 [Klebsiella variicola At-22] gi|289775882|gb|EFD83882.1| 30S ribosomal protein S4 [Klebsiella sp. 1_1_55] gi|328537344|gb|EGF63594.1| ribosomal protein S4 [Klebsiella sp. MS 92-3] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRQPER---SDLSADINEHLIVELYSK 206 >gi|41323137|gb|AAR99798.1| small ribosomal protein 4 [Plagiochila superba] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + +R +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIGNKQKSRFIITKNINSFQRVKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|26399194|sp|Q9M4C3|RR4_PLARP RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017979|emb|CAB92154.1| small ribosomal protein 4 [Plagiochasma rupestre] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTFKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHQH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N +V+I SY CK D+I +K + K + + + ++ +P +++ + Sbjct: 117 ILINNNTVDIPSYNCKPKDIITIKDRQKSQSIITKNLNFFQKQKIPNHLTFDLIQFKGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIVDR---ECIYLKINELLVVEYYSR 200 >gi|83720741|ref|YP_443547.1| 30S ribosomal protein S4 [Burkholderia thailandensis E264] gi|167582598|ref|ZP_02375472.1| 30S ribosomal protein S4 [Burkholderia thailandensis TXDOH] gi|167620712|ref|ZP_02389343.1| 30S ribosomal protein S4 [Burkholderia thailandensis Bt4] gi|257137667|ref|ZP_05585929.1| 30S ribosomal protein S4 [Burkholderia thailandensis E264] gi|123536225|sp|Q2SU52|RS4_BURTA RecName: Full=30S ribosomal protein S4 gi|83654566|gb|ABC38629.1| ribosomal protein S4 [Burkholderia thailandensis E264] Length = 207 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|302876506|ref|YP_003845139.1| 30S ribosomal protein S4 [Clostridium cellulovorans 743B] gi|307687178|ref|ZP_07629624.1| 30S ribosomal protein S4 [Clostridium cellulovorans 743B] gi|302579363|gb|ADL53375.1| ribosomal protein S4 [Clostridium cellulovorans 743B] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR GE L + K + R Y PG HGQ K K S +G+QLR Sbjct: 1 MARYTGPVCRLCRREGEKLNLKGDRCFTDKCAFDRRGYAPGQHGQS-KKKLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR + +AD+ RG T NL+ LE RLD ++YR + + ARQ Sbjct: 60 KQKAKRIYG-VLENQFRRTYDKADKMRGITGENLVKLLEMRLDNVIYRLGYGNSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY K GDVI V++KS+ + ++ R +P ++S + Sbjct: 119 LVTHGHFLVNGKKVDIPSYVVKAGDVITVREKSRATETFKTFAENP-RVLPAWLSGDIAT 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V PS V + L+VE YS+ Sbjct: 178 FEGKVVTAPSR---EDIDVPLNETLIVELYSK 206 >gi|52426079|ref|YP_089216.1| 30S ribosomal protein S4 [Mannheimia succiniciproducens MBEL55E] gi|61215476|sp|Q65QX9|RS4_MANSM RecName: Full=30S ribosomal protein S4 gi|52308131|gb|AAU38631.1| RpsD protein [Mannheimia succiniciproducens MBEL55E] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|307132815|ref|YP_003884831.1| 30S ribosomal subunit protein S4 [Dickeya dadantii 3937] gi|306530344|gb|ADN00275.1| 30S ribosomal subunit protein S4 [Dickeya dadantii 3937] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|118625971|emb|CAL39307.1| small ribosomal protein 4 [Gymnocoleopsis multiflora] Length = 202 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSISNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVSIARKAKGSTGQVLLQLLEMRLDNTIFRLGIAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SY C+ GD+I +K K K + + + ++ +P +++ + + + Sbjct: 117 ILVNSNLVDIPSYNCEPGDIITIKNKQKSQSIISKNLNSFQKSKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQ---RVNREWVNLKINELLVVEYYSR 200 >gi|68249397|ref|YP_248509.1| 30S ribosomal protein S4 [Haemophilus influenzae 86-028NP] gi|145628304|ref|ZP_01784105.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.1-21] gi|145630548|ref|ZP_01786328.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021] gi|145632160|ref|ZP_01787895.1| 30S ribosomal protein S4 [Haemophilus influenzae 3655] gi|145634787|ref|ZP_01790495.1| 30S ribosomal protein S4 [Haemophilus influenzae PittAA] gi|145636640|ref|ZP_01792307.1| 30S ribosomal protein S4 [Haemophilus influenzae PittHH] gi|145638397|ref|ZP_01794007.1| 30S ribosomal protein S4 [Haemophilus influenzae PittII] gi|145640900|ref|ZP_01796482.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021] gi|148826554|ref|YP_001291307.1| 30S ribosomal protein S4 [Haemophilus influenzae PittEE] gi|148827990|ref|YP_001292743.1| 30S ribosomal protein S4 [Haemophilus influenzae PittGG] gi|229844669|ref|ZP_04464808.1| 30S ribosomal protein S4 [Haemophilus influenzae 6P18H1] gi|229845852|ref|ZP_04465964.1| 30S ribosomal protein S4 [Haemophilus influenzae 7P49H1] gi|260581618|ref|ZP_05849415.1| ribosomal protein S4 [Haemophilus influenzae NT127] gi|319775264|ref|YP_004137752.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3047] gi|319897704|ref|YP_004135901.1| 30S ribosomal subunit protein s4 [Haemophilus influenzae F3031] gi|329122807|ref|ZP_08251379.1| 30S ribosomal protein S4 [Haemophilus aegyptius ATCC 11116] gi|81336176|sp|Q4QM98|RS4_HAEI8 RecName: Full=30S ribosomal protein S4 gi|172048051|sp|A5UDS3|RS4_HAEIE RecName: Full=30S ribosomal protein S4 gi|172048057|sp|A5UHV4|RS4_HAEIG RecName: Full=30S ribosomal protein S4 gi|68057596|gb|AAX87849.1| 30S ribosomal protein S4 [Haemophilus influenzae 86-028NP] gi|144980079|gb|EDJ89738.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.1-21] gi|144983938|gb|EDJ91380.1| 30S ribosomal protein S4 [Haemophilus influenzae R3021] gi|144987067|gb|EDJ93597.1| 30S ribosomal protein S4 [Haemophilus influenzae 3655] gi|145267953|gb|EDK07949.1| 30S ribosomal protein S4 [Haemophilus influenzae PittAA] gi|145270166|gb|EDK10102.1| 30S ribosomal protein S4 [Haemophilus influenzae PittHH] gi|145272726|gb|EDK12633.1| 30S ribosomal protein S4 [Haemophilus influenzae PittII] gi|145274414|gb|EDK14278.1| 30S ribosomal protein S4 [Haemophilus influenzae 22.4-21] gi|148716714|gb|ABQ98924.1| 30S ribosomal protein S4 [Haemophilus influenzae PittEE] gi|148719232|gb|ABR00360.1| 30S ribosomal protein S4 [Haemophilus influenzae PittGG] gi|229810856|gb|EEP46573.1| 30S ribosomal protein S4 [Haemophilus influenzae 7P49H1] gi|229812383|gb|EEP48073.1| 30S ribosomal protein S4 [Haemophilus influenzae 6P18H1] gi|260095211|gb|EEW79102.1| ribosomal protein S4 [Haemophilus influenzae NT127] gi|309751537|gb|ADO81521.1| 30S ribosomal protein S4 [Haemophilus influenzae R2866] gi|309973707|gb|ADO96908.1| 30S ribosomal protein S4 [Haemophilus influenzae R2846] gi|317433210|emb|CBY81585.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3031] gi|317449855|emb|CBY86066.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae F3047] gi|327472071|gb|EGF17509.1| 30S ribosomal protein S4 [Haemophilus aegyptius ATCC 11116] Length = 206 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|189465443|ref|ZP_03014228.1| hypothetical protein BACINT_01796 [Bacteroides intestinalis DSM 17393] gi|224537842|ref|ZP_03678381.1| hypothetical protein BACCELL_02729 [Bacteroides cellulosilyticus DSM 14838] gi|189437717|gb|EDV06702.1| hypothetical protein BACINT_01796 [Bacteroides intestinalis DSM 17393] gi|224520528|gb|EEF89633.1| hypothetical protein BACCELL_02729 [Bacteroides cellulosilyticus DSM 14838] Length = 201 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG RK K S +G+QLR KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNSRKRKTSEYGVQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A+ ++G T L+ LE RLD IV+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAETAKGITGEILLQLLEGRLDNIVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI S+ K G VI V+++SK L + + ++ + ++ V + Sbjct: 119 ITVDGEVVNIPSFAVKPGQVIGVRERSKSLEVIANSLAGFNHSKYPWLEWDDNSKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +L+VE YS+ Sbjct: 179 HVPERAD---IPENIKEHLIVELYSK 201 >gi|157372753|ref|YP_001480742.1| 30S ribosomal protein S4 [Serratia proteamaculans 568] gi|172047788|sp|A8GKH4|RS4_SERP5 RecName: Full=30S ribosomal protein S4 gi|157324517|gb|ABV43614.1| ribosomal protein S4 [Serratia proteamaculans 568] Length = 206 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---PPGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRSESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRMPERTD---LSADINEHLIVELYSK 206 >gi|69216112|gb|AAZ03894.1| ribosomal protein S4 [Yucca schidigera] Length = 201 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRPRS----GSDLKNPLRSVKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHEELPNHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|166092890|gb|ABY82404.1| ribosomal protein S4 [Viscaria vulgaris] Length = 201 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K + L+ ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRTLIKNFIDLSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|139389266|ref|YP_001123032.1| ribosomal protein S4 [Aethionema grandiflorum] gi|152060543|sp|A4QJK1|RR4_AETGR RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286228|dbj|BAF49856.1| ribosomal protein S4 [Aethionema grandiflorum] Length = 201 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V A ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPKHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|17230229|ref|NP_486777.1| 30S ribosomal protein S4 [Nostoc sp. PCC 7120] gi|26399434|sp|Q8YTI0|RS4_ANASP RecName: Full=30S ribosomal protein S4 gi|17131830|dbj|BAB74436.1| 30S ribosomal protein S4 [Nostoc sp. PCC 7120] Length = 202 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSA--RRAYPPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR VNI SY+C+ G+ I V+ K+ V Q ++P ++ + + +V Sbjct: 117 VTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLANLPSHLEFDKNKLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NSVIER---EWVALQVNELLVVEYYSR 200 >gi|237728631|ref|ZP_04559112.1| ribosomal protein S4 [Citrobacter sp. 30_2] gi|283835713|ref|ZP_06355454.1| hypothetical protein CIT292_10106 [Citrobacter youngae ATCC 29220] gi|226909253|gb|EEH95171.1| ribosomal protein S4 [Citrobacter sp. 30_2] gi|291068393|gb|EFE06502.1| ribosomal protein S4 [Citrobacter youngae ATCC 29220] Length = 206 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRKPER---SDLSADINEHLIVELYSK 206 >gi|118625989|emb|CAL39316.1| small ribosomal protein 4 [Plagiochila sp. de Roo s.n.] Length = 202 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|16272743|ref|NP_438961.1| 30S ribosomal protein S4 [Haemophilus influenzae Rd KW20] gi|260579893|ref|ZP_05847723.1| ribosomal protein S4 [Haemophilus influenzae RdAW] gi|1173260|sp|P44373|RS4_HAEIN RecName: Full=30S ribosomal protein S4 gi|1573812|gb|AAC22460.1| ribosomal protein S4 (rpS4) [Haemophilus influenzae Rd KW20] gi|260093177|gb|EEW77110.1| ribosomal protein S4 [Haemophilus influenzae RdAW] gi|301169520|emb|CBW29121.1| 30S ribosomal subunit protein S4 [Haemophilus influenzae 10810] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFATTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAIREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|326334520|ref|ZP_08200731.1| 30S ribosomal protein S4 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693289|gb|EGD35217.1| 30S ribosomal protein S4 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 201 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS ++Y PG HG R+++K S + +QL+ KQK K Sbjct: 1 MARYIGPKSKIARKFGEAIFGEDKS-FAKKNYPPGQHGINRKRAKRSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F++++++A RS+G T L+ E+RLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILERQFQNMYEKARRSKGVTGEVLLQLCEARLDNVVYRMGIAPSRRAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD++ V+ KS+ L + E + + V E+I+ N + M TF Sbjct: 119 HITVNGEVVNIPSYSLKAGDIVGVRHKSQSLTVI-ENALASNSSVYEWITWNPEKMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + P ++ L+VE YS+ Sbjct: 178 VALPQR---IQIPENIKEQLIVELYSK 201 >gi|270300639|gb|ACZ69398.1| ribosomal protein S4 [Ptilidium ciliare] Length = 202 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKILKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVCIARKAKGSTGQILLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N +VNI SY CK GD+I ++ + K + + L ++ +P +++ + + + Sbjct: 117 ISINNDTVNIPSYNCKPGDMITIRNREKSQSIITRNINLFQKLKIPNHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 NQMIHR---EWIHLKINELLVVEYYSR 200 >gi|304384301|ref|ZP_07366712.1| 30S ribosomal protein S4 [Prevotella marshii DSM 16973] gi|304334617|gb|EFM00899.1| 30S ribosomal protein S4 [Prevotella marshii DSM 16973] Length = 201 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLESRLDNVVFRMGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G VI V++KSK L + EA +I ++++ F+ Sbjct: 119 IVVDGQVVNIPSYAVKPGQVIGVREKSKSLEVIEEALAGFNHSKYPWIEWDNNSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPESIKEQLIVELYSK 201 >gi|194132117|gb|ACF33371.1| ribosomal protein S4 [Gonystylus bancanus] Length = 201 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRA----RVGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYGLI-ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + K +A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIISVKDEQKSIALIQNYLDSSTHEELPKHLTLHTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---WVGLKINELLVVEYYSR 199 >gi|323527577|ref|YP_004229730.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1001] gi|323384579|gb|ADX56670.1| ribosomal protein S4 [Burkholderia sp. CCGE1001] Length = 207 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG NI S + K GDV+ V+++SK+ A +LEA LAE+ +P ++SV+ Sbjct: 117 QLVSHKAIMVNGVVSNIPSMQVKAGDVVAVREQSKKQARILEALSLAEQGGMPSWVSVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + + +L+VE YSR Sbjct: 177 KKFEGTFKQKPERSE---IAGDINESLIVELYSR 207 >gi|156598174|gb|ABU85351.1| ribosomal protein S4 [Elaeis oleifera] Length = 201 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRP----KSGSDLKTQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K K + A + ++P++++++ Sbjct: 116 ILVNGHIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASPPPEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|149376660|ref|ZP_01894419.1| ribosomal protein S4 [Marinobacter algicola DG893] gi|149359033|gb|EDM47498.1| ribosomal protein S4 [Marinobacter algicola DG893] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 121/214 (56%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HG R+ + S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCNIET---PPGMHG-ARRGRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARIKGATGENLLQLLEGRLDNVVYRMGFGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNH 172 Q V+H+ +LVN + VNI SY+ + GDV+ V++K+K V A L+ P ++ V+ Sbjct: 116 QLVSHKAILVNDKLVNIPSYQVRPGDVVSVREKAKNQLRVKGALDLSSSRAPVSWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + +P + P + NL+VE YS+ Sbjct: 176 SKMSGVYRSVPERTE---LPADINENLIVELYSK 206 >gi|322831096|ref|YP_004211123.1| ribosomal protein S4 [Rahnella sp. Y9602] gi|321166297|gb|ADW71996.1| ribosomal protein S4 [Rahnella sp. Y9602] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD ++YR F T +R Sbjct: 57 EKQKVRRTYG-VLERQFRNYYKEAARLKGNTGENLLQLLEGRLDNVIYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRMPERTD---LSSDINEHLIVELYSK 206 >gi|315127932|ref|YP_004069935.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. SM9913] gi|315016446|gb|ADT69784.1| 30S ribosomal protein S4 [Pseudoalteromonas sp. SM9913] gi|332037269|gb|EGI73724.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNGR VNI SY D + +++KSK A ++ A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAILVNGRVVNIPSYVITPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +F R+P + L+VE YS+ Sbjct: 176 KKLEGSFKRLPER---SDLSADINEQLIVELYSK 206 >gi|75910501|ref|YP_324797.1| 30S ribosomal protein S4 [Anabaena variabilis ATCC 29413] gi|90101675|sp|Q3M534|RS4_ANAVT RecName: Full=30S ribosomal protein S4 gi|75704226|gb|ABA23902.1| SSU ribosomal protein S4P [Anabaena variabilis ATCC 29413] Length = 202 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSA--RRAYPPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR VNI SY+C+ G+ I V+ K+ V Q ++P ++ + + +V Sbjct: 117 VTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLANLPSHLEFDKNKLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWVALQVNELLVVEYYSR 200 >gi|307565139|ref|ZP_07627647.1| 30S ribosomal protein S4 [Prevotella amnii CRIS 21A-A] gi|307346170|gb|EFN91499.1| 30S ribosomal protein S4 [Prevotella amnii CRIS 21A-A] Length = 201 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A +S G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNLFEKAAKSEGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG VNI SY K GDV+ V++K+K L + A ++ + + F+ Sbjct: 119 ITVNGNVVNIASYCVKTGDVVGVREKAKSLEVIEAALAGFNHSKYPWLEWDENAKAGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HRPDRAD---IPENIKEQLIVELYSK 201 >gi|298492220|ref|YP_003722397.1| 30S ribosomal protein S4 ['Nostoc azollae' 0708] gi|298234138|gb|ADI65274.1| ribosomal protein S4 ['Nostoc azollae' 0708] Length = 202 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE KS R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLTRKSA--RRAYAPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI ARQ VNH H Sbjct: 58 NYG-LTEKQMLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRMGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR VNI SY+C+ G+ I V+ V Q ++P ++ + + + Sbjct: 117 VTVNGRVVNIASYQCRPGEEIAVRDNEASKKLVESNLQYPGLANLPNHLEFDKNKLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NSVIER---EWVALQVNELLVVEYYSR 200 >gi|319955881|ref|YP_004167144.1| SSU ribosomal protein s4p [Nitratifractor salsuginis DSM 16511] gi|319418285|gb|ADV45395.1| SSU ribosomal protein S4P [Nitratifractor salsuginis DSM 16511] Length = 208 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K++RR+G +L + KS + R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPREKLERRLGVDLGLKGERRLAGKSALEKRPYPPGQHGQRR-TKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FRSIF+EA+R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRSIFQEANRLEGNTGELLIQLLEQRLDNVVYRMGFATTRAFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH HVLV+G+ V+I SYR K G IE+++KSK + + +L + + E++ V+ + Sbjct: 119 LVNHGHVLVDGKRVDIPSYRVKPGQKIEIREKSKNNPQIQRSVELTNQTGIVEWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F RIP +++ PV + L+VE YS+ Sbjct: 179 KLFGIFTRIPER-EEISIPV--EERLIVELYSK 208 >gi|118626007|emb|CAL39321.1| small ribosomal protein 4 [Leiomylia anomala] Length = 202 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K + SY + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKMLKSKSSY---VDRSISNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + L + +P ++S + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSIITKNINLFQNLKIPSHLSFDSTKLCGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQPINR---ESVNLKINELLVVEYYSR 200 >gi|261342766|ref|ZP_05970624.1| ribosomal protein S4 [Enterobacter cancerogenus ATCC 35316] gi|288314945|gb|EFC53883.1| ribosomal protein S4 [Enterobacter cancerogenus ATCC 35316] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRQPER---SDLSADINEHLIVELYSK 206 >gi|328541082|gb|AEB21765.1| ribosomal protein S4 [Mastigophora woodsii] Length = 199 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKTLKPKSSYI---DRSISNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + +I Sbjct: 117 NNDIVDIPSYNCEPGDIITIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLCGSINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 INR---EWIHLKINELLVVEYYSR 197 >gi|139389952|ref|YP_001123552.1| ribosomal protein S4 [Draba nemorosa] gi|152060551|sp|A4QL21|RR4_DRANE RecName: Full=30S ribosomal protein S4, chloroplastic gi|134286754|dbj|BAF50376.1| ribosomal protein S4 [Draba nemorosa] Length = 201 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDPRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMALTIPQARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + V + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSTPEELPNHLTLHTFQYEGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---CVGLKINELLVVEYYSR 199 >gi|254785103|ref|YP_003072531.1| ribosomal protein S4 [Teredinibacter turnerae T7901] gi|259495299|sp|C5BQ85|RS4_TERTT RecName: Full=30S ribosomal protein S4 gi|237687392|gb|ACR14656.1| ribosomal protein S4 [Teredinibacter turnerae T7901] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 88/211 (41%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + P+ ++ PG HGQRR + S +G+QLR KQ Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLESKCKAETAPGQHGQRR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FRS +KEA R +G T NL+ LESRLD +VYR F T +RQ V Sbjct: 60 KVRRTYG-LLEKQFRSYYKEAARLKGATGENLLKLLESRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ +LVNG+++NI SY+ EGDVI V++KSK + A + A+R E++ VN D Sbjct: 119 SHKAILVNGKALNIPSYQVSEGDVIAVREKSKNQLRIQNALGIAAQRPDVEWVDVNADKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P V P + NL+VE YS+ Sbjct: 179 EGTFKRVPDR---VDLPADINENLIVELYSK 206 >gi|237806899|ref|YP_002891339.1| 30S ribosomal protein S4 [Tolumonas auensis DSM 9187] gi|259495302|sp|C4L7V4|RS4_TOLAT RecName: Full=30S ribosomal protein S4 gi|237499160|gb|ACQ91753.1| ribosomal protein S4 [Tolumonas auensis DSM 9187] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I EK+FR+ ++EA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILEKQFRNYYREATRLKGNTGENLLQLLEGRLDNVVYRMGFATTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI S + DV+ V++K+K+ A + A L A+R+ P +I +N Sbjct: 116 QLVSHKAIVVNGKVVNIPSSQVSPEDVVTVREKAKKQARIKAALDLAAQREKPTWIEINA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D M + R+P + L+VE YS+ Sbjct: 176 DKMEGVYKRLPER---SDLSADINEQLIVELYSK 206 >gi|118626009|emb|CAL39322.1| small ribosomal protein 4 [Mylia taylorii] Length = 203 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 9/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL--AERDVPEYISVNHDNMVAT 178 + +N V+I SY C+ GD++ ++ K K + + + L +P ++S + N+ + Sbjct: 117 ISINNDIVDIPSYNCEPGDILTIRNKQKSQSIITKNINLLNQNLKIPSHLSFDSTNLRGS 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 INQ---TINREWVNLKINELLVVEYYSR 201 >gi|15603256|ref|NP_246330.1| 30S ribosomal protein S4 [Pasteurella multocida subsp. multocida str. Pm70] gi|26399488|sp|Q9CL53|RS4_PASMU RecName: Full=30S ribosomal protein S4 gi|12721766|gb|AAK03475.1| RpS4 [Pasteurella multocida subsp. multocida str. Pm70] Length = 206 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|328541078|gb|AEB21763.1| ribosomal protein S4 [Acromastigum cavifolium] Length = 199 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ + SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTSKTLKSKSSYN---DRSASNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNMVDIPSYNCEPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINIKINELLVVEYYSR 197 >gi|281190726|ref|YP_003330963.1| ribosomal protein S4 [Parthenium argentatum] gi|269924839|gb|ACZ52712.1| ribosomal protein S4 [Parthenium argentatum] Length = 201 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I + + K A + + ++P ++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDTIAARDEQKSRALIQNYLDSSPPEELPNHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|307731230|ref|YP_003908454.1| 30S ribosomal protein S4 [Burkholderia sp. CCGE1003] gi|307585765|gb|ADN59163.1| ribosomal protein S4 [Burkholderia sp. CCGE1003] Length = 207 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG NI S + K GDV+ V+++SK+ A +LEA LAE+ +P ++SV+ Sbjct: 117 QLVSHKAIMVNGVVSNIPSMQVKAGDVVAVREQSKKQARILEALSLAEQGGMPSWVSVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER---SDIAGDINESLIVELYSR 207 >gi|156573732|gb|ABU85198.1| ribosomal protein S4 [Anethum graveolens] Length = 201 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T LI LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLIQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + A + + ++ ++P+++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSFDSSSQDEMPKHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|66990680|emb|CAI29118.1| small ribosomal protein 4 [Plagiochila boryana] Length = 200 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + +R +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIGNKQKSRFIITKNINSFQRLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|254416392|ref|ZP_05030145.1| ribosomal protein S4 [Microcoleus chthonoplastes PCC 7420] gi|196176830|gb|EDX71841.1| ribosomal protein S4 [Microcoleus chthonoplastes PCC 7420] Length = 202 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+G+ KSP RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGDLPGLTRKSP--RRSYPPGQHGQARR-KRSEYAIRLEEKQKLRY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLLRYVRKARRATGSTGQALLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V+VNGR VNI SY+C+ GDVI VK + V + + ++P ++ + Sbjct: 117 VMVNGREVNIASYQCRPGDVIMVKDNERSRRLVEKNLEYPGLANLPSHLEFDKKTFTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVEFYSR Sbjct: 177 NGMIER---EWVALQINELLVVEFYSR 200 >gi|166092858|gb|ABY82383.1| ribosomal protein S4 [Silene cryptoneura] Length = 201 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIKNLIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|67035598|gb|AAY62730.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum] Length = 202 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A +++ +++ VP +++ N + Sbjct: 119 VNDRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKYKVPNHLTFNSLEKKGLVNQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 179 I---LDRESINLKINELLVVEYYSR 200 >gi|166092869|gb|ABY82390.1| ribosomal protein S4 [Silene pseudoatocion] Length = 201 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFLYSSPPDELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118625995|emb|CAL39319.1| small ribosomal protein 4 [Mnioloma fuscum] Length = 202 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKILKTKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R +G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARRVKGSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I VK+K K + + L ++ +P +++ + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITVKKKQKSQFIIGKNLNLFQKLKIPSHLTFDPTELRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINREWIDLKINELLVVEYYSR 200 >gi|292559510|ref|YP_003540933.1| 30S ribosomal protein S4 [Phoenix dactylifera] gi|290790918|gb|ADD63173.1| 30S ribosomal protein S4 [Phoenix dactylifera] gi|294620579|gb|ADF28148.1| 30S ribosomal protein S4 [Phoenix dactylifera] Length = 201 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRP----KSGSDLKTQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASPPPEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|152978165|ref|YP_001343794.1| 30S ribosomal protein S4 [Actinobacillus succinogenes 130Z] gi|171704198|sp|A6VLL2|RS4_ACTSZ RecName: Full=30S ribosomal protein S4 gi|150839888|gb|ABR73859.1| ribosomal protein S4 [Actinobacillus succinogenes 130Z] Length = 206 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KSK+ A + + +LA +++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAIREKSKKQARIKASLELAEQKEKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|140083433|gb|ABO84828.1| ribosomal protein S4 [Anacolia webbii] Length = 202 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G +S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGA-LPGLTNXTPQLKSSSINQ--STSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|118626165|emb|CAL39380.1| small ribosomal protein 4 [Anastrophyllum minutum var. minutum] Length = 202 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY C+ GD+I ++ K K + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIXSYNCEPGDIITIRXKQKSQSIXTKNINLFQKLKIPSHLTFDLTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|166092847|gb|ABY82376.1| ribosomal protein S4 [Silene sorensenis] Length = 201 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRTLIQNLIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|75755661|ref|YP_319767.1| ribosomal protein S4 [Acorus calamus] gi|161622312|ref|YP_001586184.1| ribosomal protein S4 [Acorus americanus] gi|90101657|sp|Q3V532|RR4_ACOCL RecName: Full=30S ribosomal protein S4, chloroplastic gi|69216102|gb|AAZ03889.1| ribosomal protein S4 [Acorus americanus] gi|74381711|emb|CAI53796.1| ribosomal protein S4 [Acorus calamus] gi|160369855|gb|ABX38746.1| ribosomal protein S4 [Acorus americanus] Length = 201 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K TR G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTSKG---TRP-GSDLRNQFRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + + + R ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKVLIQNNMDSSTREELPKHLTLDSFQHKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|157689486|gb|ABV65299.1| ribosomal protein S4 [Heuchera sanguinea] Length = 201 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K + + ++P+Y++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRTLIQNYLDSSPHEELPKYLTLHPLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 NQIIDNK---WVGLKINELLVVEYYSR 199 >gi|114107135|ref|YP_740119.1| ribosomal protein S4 [Daucus carota] gi|122221312|sp|Q0G9W0|RR4_DAUCA RecName: Full=30S ribosomal protein S4, chloroplastic gi|113200910|gb|ABI32426.1| ribosomal protein S4 [Daucus carota] Length = 201 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMATTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + A + + + ++ ++P+++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSFNSPSQDEMPKHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|293390661|ref|ZP_06634995.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951195|gb|EFE01314.1| ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 206 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ D++ V++KSK+ A + + +LA +++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDLVAVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|158337110|ref|YP_001518285.1| 30S ribosomal protein S4 [Acaryochloris marina MBIC11017] gi|189045361|sp|B0C9F5|RS4_ACAM1 RecName: Full=30S ribosomal protein S4 gi|158307351|gb|ABW28968.1| 30S ribosomal protein S4 [Acaryochloris marina MBIC11017] Length = 202 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ RK K S + QL KQK++ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQARK-KRSEYAAQLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R+ G T L+ LE RLD ++R PTI AARQ VNH H Sbjct: 58 NYG-LSERQLLRYVRKARRAGGSTGQTLLQLLEMRLDNTIFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNGR V+I SY+C+ GDVI+ + + + Q ++P ++ + + + Sbjct: 117 VLVNGRVVSIASYQCRPGDVIQSRDRDASRKLIETHMQFPGLANIPTHLDFDKNTLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWIALEINELLVVEYYSR 200 >gi|86438880|emb|CAJ55410.1| small ribosomal protein 4 [Plagiochila circinalis] Length = 202 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIIAIRNKEKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|89147828|gb|ABD62762.1| ribosomal protein 4 [Leiocolea heterocolpos] Length = 202 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ SY K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVKIIRRLGALPGLTSKALKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ Sbjct: 60 G-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHIS 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I V+ K K + + + L ++ +P +++ + + + + Sbjct: 119 INNDIVDIPSYNCESGDIITVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGSVNQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 179 ---TINREWINLKINELLVVEYYSR 200 >gi|41323127|gb|AAR99793.1| small ribosomal protein 4 [Plagiochila raddiana] Length = 202 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SY C+ GD+I + K K V + ++ +P +++ + + + Sbjct: 117 ILVNNDIVDIPSYNCEPGDIITIGNKQKSRVIVTKNINSFQKLKIPNHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|289548515|ref|YP_003473503.1| ribosomal protein S4 [Thermocrinis albus DSM 14484] gi|289182132|gb|ADC89376.1| ribosomal protein S4 [Thermocrinis albus DSM 14484] Length = 209 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 8/211 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQ 56 M + +IDRR G + GR + + R++ PG HG + R+ K + +G++L KQ Sbjct: 1 MGRYIGPWSRIDRRFGVVVSGRKSAARILAKRNFPPGQHGRVKGRRRKLTEYGIRLMEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG I EK+F+ F A +S+G+T L+ LE RLD +VYR T ARQFV Sbjct: 61 KLKFLYGGIREKQFKKYFDMASKSKGNTGQVLLQLLERRLDNVVYRLGIACTRRQARQFV 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNM 175 H H+LVNG+ VNI SY + GDVIEVK S+ + ++E + + R VP ++ ++ +N Sbjct: 121 AHGHILVNGKKVNIPSYLVEPGDVIEVKPSSRDIPQIIENLENMDPRSVPPWLELDKENF 180 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P KD+ + + V+EFYSR Sbjct: 181 RGKVLDYP---KDIQLEIPINLQYVIEFYSR 208 >gi|160896494|ref|YP_001562076.1| 30S ribosomal protein S4 [Delftia acidovorans SPH-1] gi|226697834|sp|A9BRX4|RS4_DELAS RecName: Full=30S ribosomal protein S4 gi|160362078|gb|ABX33691.1| ribosomal protein S4 [Delftia acidovorans SPH-1] Length = 207 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 130/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS +T+ PG HG+ + S FGLQLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTK---PGQHGRTSGQRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ AD+ +G+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA + P ++ V+ Sbjct: 117 QLVSHKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF + P + + + +L+VE YSR Sbjct: 177 DKAEGTFKKSPDRDE---FGADINESLIVELYSR 207 >gi|48527395|gb|AAT45830.1| small ribosomal protein 4 [Plagiochila patentissima] Length = 202 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ILINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|189424436|ref|YP_001951613.1| 30S ribosomal protein S4 [Geobacter lovleyi SZ] gi|226699069|sp|B3E856|RS4_GEOLS RecName: Full=30S ribosomal protein S4 gi|189420695|gb|ACD95093.1| ribosomal protein S4 [Geobacter lovleyi SZ] Length = 208 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R K S +G+QLR Sbjct: 1 MARYIGPSCRLCRRENMELFLKGDRCYTDKCALKRRNYPPGQHGQGRS-KTSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FRS F ADR +G T NL+S LE RLD +VYR F + ARQ Sbjct: 60 KQKVKRLYG-LLEKQFRSYFDRADRMKGVTGENLLSLLERRLDNVVYRLGFASSRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H ++NGR I S + K GD I +++KS+ +A++ EA + R +P+++ ++ D Sbjct: 119 LVRHGHFVLNGRKATIPSIQVKAGDTIVLREKSRNVAAISEALDAVVRRGIPQWLELDRD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +D+ P +Q L+VE YS+ Sbjct: 179 AFTGLAKTVPVR-EDISTP--IQEQLIVELYSK 208 >gi|323350794|ref|ZP_08086453.1| 30S ribosomal protein S4 [Streptococcus sanguinis VMC66] gi|322122968|gb|EFX94671.1| 30S ribosomal protein S4 [Streptococcus sanguinis VMC66] gi|325689321|gb|EGD31327.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK115] gi|325695727|gb|EGD37626.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK150] Length = 245 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 43 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 101 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 102 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 160 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 161 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 219 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 220 TRLPERDE---INPEINEALIVEFYNK 243 >gi|171778571|ref|ZP_02919698.1| hypothetical protein STRINF_00550 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282794|gb|EDT48218.1| hypothetical protein STRINF_00550 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 203 Score = 260 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGSGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+Y++ Sbjct: 178 TRLPERDE---INPEINEALIVEYYNK 201 >gi|269104036|ref|ZP_06156733.1| SSU ribosomal protein S4p (S9e) [Photobacterium damselae subsp. damselae CIP 102761] gi|268163934|gb|EEZ42430.1| SSU ribosomal protein S4p (S9e) [Photobacterium damselae subsp. damselae CIP 102761] Length = 206 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ ++EA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYQEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ SY+ DV+ +++K+K A + A ++A +R++P ++ V++ M Sbjct: 119 SHKAILVNGQVVNVPSYKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEHLIVELYSK 206 >gi|238921420|ref|YP_002934935.1| 30S ribosomal protein S4 [Edwardsiella ictaluri 93-146] gi|269140550|ref|YP_003297251.1| 30S ribosomal protein S4 [Edwardsiella tarda EIB202] gi|294638030|ref|ZP_06716290.1| ribosomal protein S4 [Edwardsiella tarda ATCC 23685] gi|259495277|sp|C5BF28|RS4_EDWI9 RecName: Full=30S ribosomal protein S4 gi|238870989|gb|ACR70700.1| 30S ribosomal protein S4 (BS4) [Edwardsiella ictaluri 93-146] gi|267986211|gb|ACY86040.1| 30S ribosomal protein S4 [Edwardsiella tarda EIB202] gi|291088822|gb|EFE21383.1| ribosomal protein S4 [Edwardsiella tarda ATCC 23685] gi|304560335|gb|ADM42999.1| SSU ribosomal protein S4p (S9e) [Edwardsiella tarda FL6-60] Length = 206 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ V++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIASYQVSPNDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 176 AKMEGVFKRQPER---SDLSADINEHLIVELYSK 206 >gi|46579739|ref|YP_010547.1| 30S ribosomal protein S4 [Desulfovibrio vulgaris str. Hildenborough] gi|120602784|ref|YP_967184.1| 30S ribosomal protein S4 [Desulfovibrio vulgaris DP4] gi|61215610|sp|Q72CF5|RS4_DESVH RecName: Full=30S ribosomal protein S4 gi|152060946|sp|A1VE91|RS4_DESVV RecName: Full=30S ribosomal protein S4 gi|46449154|gb|AAS95806.1| ribosomal protein S4 [Desulfovibrio vulgaris str. Hildenborough] gi|120563013|gb|ABM28757.1| SSU ribosomal protein S4P [Desulfovibrio vulgaris DP4] gi|311233530|gb|ADP86384.1| ribosomal protein S4 [Desulfovibrio vulgaris RCH1] Length = 208 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K + RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTDAKCRQCRREGTKLFLKGDRCFTDKCAFDRRPYAPGQHGRARK-KVSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++F + F +AD ++G T NL+S LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRMYG-ILEQQFHAYFTKADMAKGVTGANLLSLLERRLDNVIYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VNI S + + GD IEV +KS+++ + EA + +A R P ++ + Sbjct: 119 LVRHGIFTLNGRKVNIPSLQVRIGDTIEVPEKSRKIPVLAEAQEVIARRGCPAWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P +D+ +P + +L+VE YS+ Sbjct: 179 NFRGVVKALPQR-EDIQFP--INEHLIVELYSK 208 >gi|328541124|gb|AEB21786.1| ribosomal protein S4 [Acromastigum divaricatum] Length = 199 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ + S+ K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTGKTLKSKSSHN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH H+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSIDQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|262273355|ref|ZP_06051169.1| SSU ribosomal protein S4p (S9e) [Grimontia hollisae CIP 101886] gi|262222333|gb|EEY73644.1| SSU ribosomal protein S4p (S9e) [Grimontia hollisae CIP 101886] Length = 206 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DVI +++K+K A + A ++ A+R++P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFKVTANDVISIREKAKNQARIKAALEIAAQRELPTWIEVDSNKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEHLIVELYSK 206 >gi|66990670|emb|CAI29113.1| small ribosomal protein 4 [Plagiochila streimannii] Length = 202 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIIAIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWIDLKINELLVVEYYSR 200 >gi|312968379|ref|ZP_07782589.1| ribosomal protein S4 [Escherichia coli 2362-75] gi|312287204|gb|EFR15114.1| ribosomal protein S4 [Escherichia coli 2362-75] Length = 206 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VN R VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNDRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRKPER---SDLSADINEHLIVELYSK 206 >gi|166239974|gb|ABY86503.1| ribosomal protein S4 [Silene fruticosa] Length = 205 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K K K A +L + ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDKQKSRALILNYLDSSPPDELPKHLTLDPFPYKFPY 175 Query: 180 VRIPSSLKDV-PYPVIMQPNLVVEFYSR 206 + + + D + + LVVE+YSR Sbjct: 176 KGLINQIIDSKWVGLKINELLVVEYYSR 203 >gi|324989545|gb|EGC21491.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK353] Length = 245 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 43 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 101 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 102 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 160 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 161 HILVDGKRVDIPSYRVNPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 219 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 220 TRLPERDE---INPEINEALIVEFYNK 243 >gi|319952171|ref|YP_004163438.1| ssu ribosomal protein s4p [Cellulophaga algicola DSM 14237] gi|319420831|gb|ADV47940.1| SSU ribosomal protein S4P [Cellulophaga algicola DSM 14237] Length = 201 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R++ PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYIGPKTKIARKFGEAIFGDDKS-FEKRNFPPGQHGNARRRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR+IF A R G T L+ E RLD +V+R + ARQ V+HR Sbjct: 60 YTYG-ILEKQFRNIFASAKRKEGVTGEILLQLCECRLDNVVFRMGVSNSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK ++++ +A + V E+++ N + M TF Sbjct: 119 HITVNGELVNIPSYSLKSGDVVGVREKSKSISTIQDALA-SNSSVYEWMTWNTEKMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VAVPERLQ---IPENIKEQLIVELYSK 201 >gi|254483410|ref|ZP_05096639.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2148] gi|214036284|gb|EEB76962.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2148] Length = 206 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCKAEAIPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 H+ ++VNG+ VNI SY+ K GDV+ +++K+K+ V A L A+R PE+I VN D + Sbjct: 119 AHKSIMVNGQVVNIASYQVKAGDVVALREKAKKQLRVQSALALAAQRGEPEWIEVNADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + NL+VE YS+ Sbjct: 179 EGTFKSVPDRQD---LSSEINENLIVELYSK 206 >gi|220930992|ref|YP_002507900.1| ribosomal protein S4 [Halothermothrix orenii H 168] gi|254764592|sp|B8D0T6|RS4_HALOH RecName: Full=30S ribosomal protein S4 gi|219992302|gb|ACL68905.1| ribosomal protein S4 [Halothermothrix orenii H 168] Length = 208 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 90/213 (42%), Positives = 128/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K ++ RSY PG HG RR++KP+ +G+QLR Sbjct: 1 MARYKGPVCRLCRREGEKLYLKGQRCYTDKCAIDRRSYPPGEHG-RRRNKPTEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG I EK+F+ F A++ G T N +S LE RLD +VYR + ARQ Sbjct: 60 KQKVKRIYG-ILEKQFKRYFDMAEKMPGVTGENFLSILERRLDNVVYRLGLATSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISVNHD 173 FV H H+LVNGR VNI SY EGDVI VK S++ E + E P+++SVN + Sbjct: 119 FVLHGHILVNGRKVNIPSYLVDEGDVISVKDSSRKSKRFKEVFEFNEDLTPPKWLSVNLE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ +D+ YPV + +L+VEFYSR Sbjct: 179 KAEGKVVAMPTR-EDIDYPV--EEHLIVEFYSR 208 >gi|121720615|ref|YP_001001536.1| ribosomal protein S4 [Nuphar advena] gi|69216106|gb|AAZ03891.1| ribosomal protein S4 [Nuphar advena] gi|84682206|gb|ABC60460.1| ribosomal protein S4 [Nuphar advena] Length = 201 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKPRS----ASDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A ++ G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLRYVRIAGKANGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + ++P++++++ Sbjct: 116 ILVNGRLVDIPSYRCKPRDIITTKDKQRSRALIQNHMDSSSNAELPKHLTLHSLQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + L+VE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLIVEYYSR 199 >gi|326909395|ref|YP_004327664.1| ribosomal protein S4 [Hevea brasiliensis] gi|308523509|gb|ADO33559.1| ribosomal protein S4 [Hevea brasiliensis] Length = 201 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KVGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARAEQKSRAMIKNYLDSSPQEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|166092838|gb|ABY82370.1| ribosomal protein S4 [Silene littorea] Length = 201 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NKIIDSK---WVGLKINELLVVEYYSR 199 >gi|330719419|ref|ZP_08314019.1| 30S ribosomal protein S4 [Leuconostoc fallax KCTC 3537] Length = 203 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K ++ RR+G +L G K ++ R+Y PG HG R+SK S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRLSRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRSKLSEYGVQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A +G N + LE RLD++V+R F + ARQ VNH Sbjct: 60 TYG-LTERQFHALFNKAGSIRKGTHGTNFMILLEQRLDSLVFRLGFATSRAQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G I V+ KSK + + A + A P+++S + D + + Sbjct: 119 HILVDGKRVDIPSYHVVPGQEISVRDKSKNIVPIQSAIE-AVVSRPQFVSFDADKLTGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VE+Y+R Sbjct: 178 VRLPEREE---LDADINEALIVEYYNR 201 >gi|311748488|ref|ZP_07722273.1| ribosomal protein S4 [Algoriphagus sp. PR1] gi|126577005|gb|EAZ81253.1| ribosomal protein S4 [Algoriphagus sp. PR1] Length = 201 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE + G K + ++Y PG HG+ R+ K S + +QL KQK K Sbjct: 1 MARYTGPKAKIARKFGEPIEGHSK-ALQKKNYPPGQHGRGRRKKQSEYAIQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++F +F A R G T NL+ LE+RLD VYR PT ARQ V+H+H Sbjct: 60 IYG-ILERQFAKMFDIASRKSGITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG VNI SY K GD++ V+++SK L ++ + + ++ + ++ FV Sbjct: 119 ILVNGELVNIPSYSLKPGDIVSVRERSKSLEAITNSLAGRGANKYSWLEWDGASLSGKFV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +PS P ++ L+VE YS+ Sbjct: 179 SVPSRDD---IPENVKEQLIVELYSK 201 >gi|261854973|ref|YP_003262256.1| ribosomal protein S4 [Halothiobacillus neapolitanus c2] gi|261835442|gb|ACX95209.1| ribosomal protein S4 [Halothiobacillus neapolitanus c2] Length = 207 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK K S +G+QLR Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVRSHEDKCHHDR---APGQHGAARKQKVSEYGVQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++F + FK+A + +G T NL+ LE RLD +VYR F T +R Sbjct: 58 EKQKLRRIYG-VLERQFANYFKKAAQLKGSTGENLLQLLECRLDNVVYRMGFGSTRSESR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+HR + VNG VNI SY+ DV+ V++ S++ + ++ ++ A+R +ISV+ Sbjct: 117 QLVSHRAITVNGEVVNIASYQVAANDVVAVRESSRKQQRIKDSLEIAAQRPDVSWISVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F PS + P + +LVVE YS+ Sbjct: 177 AKMEGVFKSAPSRDE---LPAEINESLVVELYSK 207 >gi|323149084|ref|YP_004222648.1| ribosomal protein S4 [Anthriscus cerefolium] gi|289645577|gb|ADD13640.1| ribosomal protein S4 [Anthriscus cerefolium] Length = 201 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQARSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + A + + ++ ++P+++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSFDSSSQDEMPKHLTLQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NKIIDSK---WVGLKINELLVVEYYSR 199 >gi|52220812|ref|YP_086968.1| ribosomal protein S4 [Panax ginseng] gi|62287232|sp|Q68S04|RR4_PANGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|51235315|gb|AAT98511.1| ribosomal protein S4 [Panax ginseng] Length = 201 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + + + ++P++++++ Sbjct: 116 ILVNGRIVDIASYRCKPRDIITARDEENSRTLIQNSLDSSSHDELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|117618638|ref|YP_854866.1| ribosomal protein S4 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|152060928|sp|A0KF44|RS4_AERHH RecName: Full=30S ribosomal protein S4 gi|117560045|gb|ABK36993.1| ribosomal protein S4 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 206 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK++ S +G+QLR Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---VPGQHG-ARKARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +++A R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++K+K+ A + + ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIPSFQVSPEDVICVREKAKKQARIKASLEVAGQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRLPER---SDLSADINEQLIVELYSK 206 >gi|170016575|ref|YP_001727494.1| ribosomal protein S4 [Leuconostoc citreum KM20] gi|226699084|sp|B1MWZ8|RS4_LEUCK RecName: Full=30S ribosomal protein S4 gi|169803432|gb|ACA82050.1| Ribosomal protein S4 [Leuconostoc citreum KM20] Length = 203 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A + +G N + LE RLD++VYR F T ARQ VNH Sbjct: 60 TYG-LTERQFHALFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGFATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H++V+G+ V+I SY G V+ V+ KSK + + A + P+++S + + + + Sbjct: 119 HIMVDGKRVDIPSYNVTPGQVVSVRDKSKNIVPIQAAVESVVAR-PQFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VE+Y+R Sbjct: 178 VRLPEREE---LDADLNEALIVEYYNR 201 >gi|116491377|ref|YP_810921.1| SSU ribosomal protein S4P [Oenococcus oeni PSU-1] gi|116092102|gb|ABJ57256.1| SSU ribosomal protein S4P [Oenococcus oeni PSU-1] Length = 262 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 59 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 117 Query: 60 KYYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + +G N LE+RLD++V+R T ARQ VNH Sbjct: 118 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 176 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 177 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 235 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 236 LTRYPEREE---LGADINESLIVEYYNR 260 >gi|118625939|emb|CAL39291.1| small ribosomal protein 4 [Neesioscyphus argillaceus] Length = 202 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKQKSSYI---DRSTSTKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD I V+ + K + + + L +P +++ + + Sbjct: 117 ISINNDIVDIPSYNCEPGDNITVRNRQKSQSIITKNINLFPNSKIPSHLTFDSMKLRGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINRELINLKINELLVVEYYSR 200 >gi|86438908|emb|CAJ55415.1| small ribosomal protein 4 [Plagiochila validissima] Length = 202 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVV++YSR Sbjct: 177 NQMINR---EWINLKINELLVVQYYSR 200 >gi|121761863|gb|ABM65017.1| ribosomal protein S4 [Plagiomnium cf. tezukae Wyatt 1808] Length = 202 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE+RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K + + ++ +P++++ N N Sbjct: 117 ILVNDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKSKIPDHLTYNSLNKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRDSIDLKINELLVVEYYSR 200 >gi|145300911|ref|YP_001143752.1| ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida A449] gi|152060929|sp|A4SSY2|RS4_AERS4 RecName: Full=30S ribosomal protein S4 gi|142853683|gb|ABO92004.1| ribosomal protein S4 [Aeromonas salmonicida subsp. salmonicida A449] Length = 206 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK++ S +G+QLR Sbjct: 1 MARYIGPKLKLSRREGTDLFLKSGVRAIDSKCKIDT---APGQHG-ARKARLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +++A R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++K+K+ A + + ++A +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIPSFQVSPEDVVCVREKAKKQARIKASLEVAGQREKPTWVEVDT 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRLPER---SDLSADINEQLIVELYSK 206 >gi|22538271|ref|NP_689122.1| 30S ribosomal protein S4 [Streptococcus agalactiae 2603V/R] gi|25012131|ref|NP_736526.1| 30S ribosomal protein S4 [Streptococcus agalactiae NEM316] gi|76787020|ref|YP_330685.1| 30S ribosomal protein S4 [Streptococcus agalactiae A909] gi|76799096|ref|ZP_00781286.1| ribosomal protein S4 [Streptococcus agalactiae 18RS21] gi|77406884|ref|ZP_00783910.1| ribosomal protein S4 [Streptococcus agalactiae H36B] gi|77408905|ref|ZP_00785630.1| ribosomal protein S4 [Streptococcus agalactiae COH1] gi|77410869|ref|ZP_00787226.1| ribosomal protein S4 [Streptococcus agalactiae CJB111] gi|77413207|ref|ZP_00789405.1| ribosomal protein S4 [Streptococcus agalactiae 515] gi|41017840|sp|Q8DWS6|RS4_STRA5 RecName: Full=30S ribosomal protein S4 gi|41017841|sp|Q8E2M6|RS4_STRA3 RecName: Full=30S ribosomal protein S4 gi|90101728|sp|Q3JYG8|RS4_STRA1 RecName: Full=30S ribosomal protein S4 gi|22535185|gb|AAN00995.1|AE014288_13 ribosomal protein S4 [Streptococcus agalactiae 2603V/R] gi|24413675|emb|CAD47755.1| 30S ribosomal protein S4 [Streptococcus agalactiae NEM316] gi|76562077|gb|ABA44661.1| ribosomal protein S4 [Streptococcus agalactiae A909] gi|76585564|gb|EAO62132.1| ribosomal protein S4 [Streptococcus agalactiae 18RS21] gi|77160747|gb|EAO71860.1| ribosomal protein S4 [Streptococcus agalactiae 515] gi|77163087|gb|EAO74041.1| ribosomal protein S4 [Streptococcus agalactiae CJB111] gi|77172496|gb|EAO75640.1| ribosomal protein S4 [Streptococcus agalactiae COH1] gi|77174516|gb|EAO77359.1| ribosomal protein S4 [Streptococcus agalactiae H36B] gi|319746120|gb|EFV98393.1| 30S ribosomal protein S4 [Streptococcus agalactiae ATCC 13813] Length = 203 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A +++ G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKAKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|260914657|ref|ZP_05921123.1| 30S ribosomal protein S4 [Pasteurella dagmatis ATCC 43325] gi|260631256|gb|EEX49441.1| 30S ribosomal protein S4 [Pasteurella dagmatis ATCC 43325] Length = 206 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRSEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|254253495|ref|ZP_04946813.1| Ribosomal protein S4 [Burkholderia dolosa AUO158] gi|124896104|gb|EAY69984.1| Ribosomal protein S4 [Burkholderia dolosa AUO158] Length = 207 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDVI +++K+K+ A ++E+ LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVIAIREKAKKQARIVESLSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|301155354|emb|CBW14820.1| 30S ribosomal subunit protein S4 [Haemophilus parainfluenzae T3T1] Length = 206 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDI---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|219673972|ref|YP_002456457.1| ribosomal protein S4 [Trifolium subterraneum] gi|193788941|gb|ACF20537.1| ribosomal protein S4 [Trifolium subterraneum] Length = 201 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q ++ S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPTD----GSKLRNQSPPTQKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K + K + + + + R +P +++++ Sbjct: 116 VLVNGRIVDIPSYRCKPQDIITAKGEQKSRTLIQNSLESSPRGALPTHLTLHPLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + M LVVE+YSR Sbjct: 176 NQIIDSK---WVGLEMNELLVVEYYSR 199 >gi|224476810|ref|YP_002634416.1| 30S ribosomal protein S4 [Staphylococcus carnosus subsp. carnosus TM300] gi|254764610|sp|B9DN91|RS4_STACT RecName: Full=30S ribosomal protein S4 gi|222421417|emb|CAL28231.1| 30S ribosomal protein S4 [Staphylococcus carnosus subsp. carnosus TM300] Length = 201 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 6/205 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG ++ K S + +QLR KQK++ Sbjct: 1 MARFRGSNWKKSRRLGISLSGTGKE-LEKRPYAPGQHGPNQRKKLSEYAIQLREKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++F + F EA + G N + L RLD +VY T ARQ V H H Sbjct: 60 LYG-ITERQFHNTFIEAGKQSGVHGENFMRLLARRLDAVVYALGLARTRRQARQLVGHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G V+ V++KS++L + E+ ++ VPEY+ + + + TFV Sbjct: 119 IEVDGKRVNIPSYTLKPGQVVSVREKSQKLDIIQESVEI-NNFVPEYLDFDEEKLSGTFV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYS 205 R+P + P + L+VE+YS Sbjct: 178 RVPERSE---LPAEINEQLIVEYYS 199 >gi|91214131|ref|YP_538753.1| ribosomal protein S4 [Glycine max] gi|90101669|sp|Q2PMU5|RR4_SOYBN RecName: Full=30S ribosomal protein S4, chloroplastic gi|83595732|gb|ABC25113.1| ribosomal protein S4 [Glycine max] Length = 201 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P L Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGSLPGLTSKRPTVK----SELRNQSRSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ +NHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQLINHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNG V+I SYRCK D+I K + K + A R +P +++++ Sbjct: 116 VLVNGHIVDIPSYRCKPQDIITAKDEQKSKTLIQNYLDSAPREKLPNHLTLHPFQYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 NQIIDNK---WVGLKINELLVVEYYSR 199 >gi|291619151|ref|YP_003521893.1| RpsD [Pantoea ananatis LMG 20103] gi|291154181|gb|ADD78765.1| RpsD [Pantoea ananatis LMG 20103] Length = 206 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGGQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VLVNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|239818004|ref|YP_002946914.1| 30S ribosomal protein S4 [Variovorax paradoxus S110] gi|319796381|ref|YP_004158021.1| ribosomal protein s4 [Variovorax paradoxus EPS] gi|259495303|sp|C5CQ76|RS4_VARPS RecName: Full=30S ribosomal protein S4 gi|239804581|gb|ACS21648.1| ribosomal protein S4 [Variovorax paradoxus S110] gi|315598844|gb|ADU39910.1| ribosomal protein S4 [Variovorax paradoxus EPS] Length = 207 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 130/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ + S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIQDKAKFDSK---PGQHGRTSGQRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR RG+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRRGNTGANLLFILESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDVI V+ KSK+ + EA QLA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIPSYLVKTGDVIAVRDKSKKQTRIAEALQLAQQVGIPAWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF ++P + + + +L+VE YSR Sbjct: 177 DKAEGTFKKVPDRDE---FAADINESLIVELYSR 207 >gi|163752892|ref|ZP_02160016.1| 30S ribosomal protein S4 [Kordia algicida OT-1] gi|161326624|gb|EDP97949.1| 30S ribosomal protein S4 [Kordia algicida OT-1] Length = 201 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG RR+ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGNNRRRGKKSEYAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++FR++F A+RS+G T L+ ESRLD +V+R PT ARQ V+HR Sbjct: 60 YTYG-ILERQFRNLFDRANRSKGITGEVLLQLCESRLDNVVFRMGISPTRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDV+ V++KSK L + + A V E+I+ N + T+ Sbjct: 119 HITVNGEQVNIPSYTLKAGDVVGVREKSKSLEVIERSLANASH-VYEWITWNGEKKEGTY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V IP L+ P ++ L+VE YS+ Sbjct: 178 VSIPERLQ---IPENIKEQLIVELYSK 201 >gi|41323111|gb|AAR99785.1| small ribosomal protein 4 [Plagiochila fruticosa] Length = 202 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---ERSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMCIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LV+E+YSR Sbjct: 177 NQMINR---EWLNLQINELLVLEYYSR 200 >gi|254495366|ref|ZP_05108290.1| 30S ribosomal protein S4 [Polaribacter sp. MED152] gi|85819720|gb|EAQ40877.1| 30S ribosomal protein S4 [Polaribacter sp. MED152] Length = 201 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ R++ PG HG RR+ K S + QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKN-FEKRNFPPGQHGNARRRGKKSEYATQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F ++FK+A S+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILERQFSNLFKKASASQGITGEILLQLCESRLDNVVYRMGVSNSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY KEGDV+ V++KSK L ++ +A + +V E+++ N+D TF Sbjct: 119 HITVNGEIVNIPSYSLKEGDVVAVREKSKSLVAIEDALA-SNNNVFEWLTWNNDTKSGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V++P L+ P ++ L+VE YS+ Sbjct: 178 VKVPERLQ---IPENIKEQLIVELYSK 201 >gi|325856044|ref|ZP_08171933.1| ribosomal protein S4 [Prevotella denticola CRIS 18C-A] gi|327313216|ref|YP_004328653.1| 30S ribosomal protein S4 [Prevotella denticola F0289] gi|325483716|gb|EGC86680.1| ribosomal protein S4 [Prevotella denticola CRIS 18C-A] gi|326946115|gb|AEA22000.1| ribosomal protein S4 [Prevotella denticola F0289] Length = 201 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + +++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKKNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNLFDKAAKADGITGEVLLQSLESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG V I SY+ K GDV+ V++K+K L + A ++ + + F+ Sbjct: 119 IVVNGNVVGIASYQVKAGDVVGVREKAKSLEVIEAALAGFNHSKYPWLEWDENAKCGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HRPDRAD---IPENIKEQLIVELYSK 201 >gi|166092878|gb|ABY82396.1| ribosomal protein S4 [Silene atocioides] Length = 201 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQARSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NKIIDSK---WVGLKINELLVVEYYSR 199 >gi|16766705|ref|NP_462320.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415335|ref|YP_152410.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181921|ref|YP_218338.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161506031|ref|YP_001573143.1| 30S ribosomal protein S4 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|168264703|ref|ZP_02686676.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468027|ref|ZP_02701864.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194445278|ref|YP_002042667.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447938|ref|YP_002047440.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472917|ref|ZP_03078901.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734012|ref|YP_002116359.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247634|ref|YP_002148336.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262156|ref|ZP_03162230.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244329|ref|YP_002217379.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387686|ref|ZP_03214298.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931411|ref|ZP_03222080.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354956|ref|YP_002228757.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858658|ref|YP_002245309.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913869|ref|ZP_04657706.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|3914907|sp|O54297|RS4_SALTY RecName: Full=30S ribosomal protein S4 gi|62287196|sp|Q5PK09|RS4_SALPA RecName: Full=30S ribosomal protein S4 gi|75505522|sp|Q57J55|RS4_SALCH RecName: Full=30S ribosomal protein S4 gi|189045396|sp|A9MN71|RS4_SALAR RecName: Full=30S ribosomal protein S4 gi|226695074|sp|B4TXB9|RS4_SALSV RecName: Full=30S ribosomal protein S4 gi|226699114|sp|B5F7S2|RS4_SALA4 RecName: Full=30S ribosomal protein S4 gi|226699115|sp|B5FJJ1|RS4_SALDC RecName: Full=30S ribosomal protein S4 gi|226699116|sp|B5R1F3|RS4_SALEP RecName: Full=30S ribosomal protein S4 gi|226699117|sp|B5RH39|RS4_SALG2 RecName: Full=30S ribosomal protein S4 gi|226699118|sp|B4TJY6|RS4_SALHS RecName: Full=30S ribosomal protein S4 gi|226699119|sp|B4SUR7|RS4_SALNS RecName: Full=30S ribosomal protein S4 gi|2780215|emb|CAA11203.1| ribosomal protein S4 [Salmonella typhimurium] gi|16421972|gb|AAL22279.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129592|gb|AAV79098.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129554|gb|AAX67257.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160867378|gb|ABX24001.1| hypothetical protein SARI_04212 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194403941|gb|ACF64163.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406242|gb|ACF66461.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459281|gb|EDX48120.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709514|gb|ACF88735.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628917|gb|EDX48327.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211337|gb|ACH48734.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240411|gb|EDY23031.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938845|gb|ACH76178.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604784|gb|EDZ03329.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319839|gb|EDZ05049.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274737|emb|CAR39793.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205346870|gb|EDZ33501.1| ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710461|emb|CAR34819.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248573|emb|CBG26411.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995625|gb|ACY90510.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159959|emb|CBW19478.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914439|dbj|BAJ38413.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087861|emb|CBY97624.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322615043|gb|EFY11967.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617330|gb|EFY14231.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625552|gb|EFY22377.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626394|gb|EFY23203.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632094|gb|EFY28847.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635027|gb|EFY31750.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643272|gb|EFY39839.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646644|gb|EFY43151.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649990|gb|EFY46409.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652707|gb|EFY49047.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659536|gb|EFY55780.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665522|gb|EFY61709.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670416|gb|EFY66555.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670489|gb|EFY66623.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675065|gb|EFY71148.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681602|gb|EFY77631.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685946|gb|EFY81935.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716407|gb|EFZ07978.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131774|gb|ADX19204.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195816|gb|EFZ80989.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196428|gb|EFZ81579.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202333|gb|EFZ87378.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207318|gb|EFZ92268.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211246|gb|EFZ96091.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216045|gb|EGA00776.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223464|gb|EGA07792.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226806|gb|EGA10996.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231832|gb|EGA15942.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233215|gb|EGA17310.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237282|gb|EGA21347.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245517|gb|EGA29516.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249023|gb|EGA32945.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250646|gb|EGA34527.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256875|gb|EGA40589.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263024|gb|EGA46571.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266024|gb|EGA49519.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272781|gb|EGA56184.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625160|gb|EGE31505.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630105|gb|EGE36448.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M T+ R P + +L+VE YS+ Sbjct: 176 GKMEGTYKRKPER---SDLSADINEHLIVELYSK 206 >gi|303237525|ref|ZP_07324090.1| ribosomal protein S4 [Prevotella disiens FB035-09AN] gi|302482345|gb|EFL45375.1| ribosomal protein S4 [Prevotella disiens FB035-09AN] Length = 202 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K + R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LAKRNFPPGQHGNNRRRKVSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F A ++ G T L+ LESRLD +VYR PT AARQ VNH+H Sbjct: 60 TYG-VLERQFRNMFDRAAKASGITGEVLLQNLESRLDNVVYRLGLAPTRAAARQLVNHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG VNI SY K GD++ V++K+K L + A +I + ++ F+ Sbjct: 119 IVVNGGVVNIASYAVKAGDIVGVREKAKSLEVIEAALAGFNHSKYPWIEWDENSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ P ++ L+VE YS+ Sbjct: 179 HQPAR---EDIPENIKEQLIVELYSK 201 >gi|89076300|ref|ZP_01162641.1| 30S ribosomal protein S4 [Photobacterium sp. SKA34] gi|90581702|ref|ZP_01237490.1| 30S ribosomal protein S4 [Vibrio angustum S14] gi|330447013|ref|ZP_08310663.1| ribosomal protein S4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|89048004|gb|EAR53593.1| 30S ribosomal protein S4 [Photobacterium sp. SKA34] gi|90437117|gb|EAS62320.1| 30S ribosomal protein S4 [Vibrio angustum S14] gi|328491204|dbj|GAA05160.1| ribosomal protein S4 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K A R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRTYG-VLEKQFRNYYKTAARIKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+K A + A ++A +R++P ++ V+ M Sbjct: 119 SHKAILVNGQVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDSSKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEHLIVELYSK 206 >gi|319787902|ref|YP_004147377.1| ribosomal protein S4 [Pseudoxanthomonas suwonensis 11-1] gi|317466414|gb|ADV28146.1| ribosomal protein S4 [Pseudoxanthomonas suwonensis 11-1] Length = 208 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + + PG HG RK K S + QLR Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQK---PGQHGAARKGKLSDYATQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K+A +G+T NL+ LE+RLD +VYR F T +AR Sbjct: 58 EKQKVKRIYG-LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPSAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVN 171 Q V+HR VLVNG+ VN+ SY+ K GD I + +K+++ V EA +AE+ P +I V+ Sbjct: 117 QLVSHRGVLVNGKPVNLPSYQVKAGDSIALSEKAQKQLRVQEALTVAEQHDMTPSWIEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P P + L+VE YS+ Sbjct: 177 AKKFAGVFKAVPDRAD---LPADINEALIVELYSK 208 >gi|317049816|ref|YP_004117464.1| 30S ribosomal protein S4 [Pantoea sp. At-9b] gi|316951433|gb|ADU70908.1| ribosomal protein S4 [Pantoea sp. At-9b] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGGQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSILVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 TKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|228478099|ref|ZP_04062710.1| ribosomal protein S4 [Streptococcus salivarius SK126] gi|312864106|ref|ZP_07724341.1| ribosomal protein S4 [Streptococcus vestibularis F0396] gi|322374008|ref|ZP_08048542.1| ribosomal protein S4 [Streptococcus sp. C150] gi|322515823|ref|ZP_08068767.1| 30S ribosomal protein S4 [Streptococcus vestibularis ATCC 49124] gi|228250279|gb|EEK09532.1| ribosomal protein S4 [Streptococcus salivarius SK126] gi|311100338|gb|EFQ58546.1| ribosomal protein S4 [Streptococcus vestibularis F0396] gi|321276974|gb|EFX54045.1| ribosomal protein S4 [Streptococcus sp. C150] gi|322125709|gb|EFX97031.1| 30S ribosomal protein S4 [Streptococcus vestibularis ATCC 49124] Length = 203 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGFSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKVKGGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-ATIGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|20531077|gb|AAM27360.1| ribosomal protein 4 [Diphyscium foliosum] Length = 201 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + +I RR+G K+P + + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVRIIRRLGALPGLTSKTPQLKSNSI---NQSASNKKISQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN R VNI SYRCK D I +K++ K +++ L+++ +P +++ N Sbjct: 117 LVNDRIVNIPSYRCKPQDFITIKERQKSQGIIVKNMDLSQKYKIPNHLTFNSLEKKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 QI---LDRESIGLKINELLVVEYYSR 199 >gi|166092893|gb|ABY82406.1| ribosomal protein S4 [Petrocoptis pyrenaica] Length = 201 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NKIIDSK---WVGLKINELLVVEYYSR 199 >gi|157689514|gb|ABV65313.1| ribosomal protein S4 [Liquidambar styraciflua] Length = 201 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRHQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A V + R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALVQNYLASSPREELPNHLTLHLFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVSLKINELLVVEYYSR 199 >gi|224373704|ref|YP_002608076.1| 30S ribosomal protein S4 [Nautilia profundicola AmH] gi|254764602|sp|B9L6T8|RS4_NAUPA RecName: Full=30S ribosomal protein S4 gi|223590010|gb|ACM93746.1| ribosomal protein S4 [Nautilia profundicola AmH] Length = 208 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+G +L + KS ++ R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYTGPVEKIERRLGVSLELKGERRLAGKSALDKRPYAPGQHGQRR-TKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG + EK+FR F+EA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKIKFYYG-VLEKQFRKFFREANRQEGNTGENLIKLLERRLDNVVYRMGFASTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+LVNG+ VNI SY KEGD IE+++KSK + A +L+++ + ++ V+ + Sbjct: 119 LVTHGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQRALELSQQTGIAPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +V F R+P + + ++ LVVE YS+ Sbjct: 179 KLVGVFQRVPEREE---VNIPVEERLVVELYSK 208 >gi|119773378|ref|YP_926118.1| 30S ribosomal protein S4 [Shewanella amazonensis SB2B] gi|152112259|sp|A1S242|RS4_SHEAM RecName: Full=30S ribosomal protein S4 gi|119765878|gb|ABL98448.1| SSU ribosomal protein S4P [Shewanella amazonensis SB2B] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRLPER---SDLSADINEQLIVELYSK 206 >gi|225850762|ref|YP_002730996.1| 30S ribosomal protein S4 [Persephonella marina EX-H1] gi|254764604|sp|C0QQQ0|RS4_PERMH RecName: Full=30S ribosomal protein S4 gi|225645002|gb|ACO03188.1| ribosomal protein S4 [Persephonella marina EX-H1] Length = 205 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 117/208 (56%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M + K+ RR+G + G K R++ PG HG Q RK K S + ++L+ KQK+ Sbjct: 1 MGRYLGPLTKVSRRLGVFVGGSLK-AFQKRNFPPGQHGRVQGRKVKLSDYAIRLQEKQKL 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG I EK+F+ F EA RS G+T L+ LE RLD +VYR F T ARQ V H Sbjct: 60 RYLYGGIREKQFKRYFDEAARSAGNTGQILLQLLERRLDNVVYRLGFAKTRRQARQLVRH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVA 177 H LVNGR V+I SYR GD+IE+++KS+ E + + R +P ++ ++ +N Sbjct: 120 GHFLVNGRKVDIPSYRVDPGDIIELREKSRNSPLFKENLESRDPRSIPNWLELDKENFRG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYS 205 + IP +++ + + L++EFYS Sbjct: 180 KVLEIP---QEIELEIPVNVQLIIEFYS 204 >gi|134096297|ref|YP_001101372.1| 30S ribosomal protein S4 [Herminiimonas arsenicoxydans] gi|172044175|sp|A4G9R4|RS4_HERAR RecName: Full=30S ribosomal protein S4 gi|133740200|emb|CAL63251.1| 30S ribosomal subunit protein S4 [Herminiimonas arsenicoxydans] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG I E++FR F EADR +G+T L+ LE+RLD +VYR F T R Sbjct: 58 EKQKVKRMYG-ILERQFRRYFAEADRRKGNTGETLLKLLETRLDNVVYRMGFGSTRAEGR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ VNG VNI SY+ K GD++ V++KSK+ ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAFTVNGIVVNIASYQVKPGDIVAVREKSKKQVRIVEALSLAEQIGMPSWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +P + + +L+VE YSR Sbjct: 177 KKMEGTFKSVPDRSE---IAADVNESLIVELYSR 207 >gi|227891072|ref|ZP_04008877.1| 30S ribosomal protein S4 [Lactobacillus salivarius ATCC 11741] gi|227866946|gb|EEJ74367.1| 30S ribosomal protein S4 [Lactobacillus salivarius ATCC 11741] Length = 201 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K ++ R Y PG HGQ R+ S +GLQLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGFSLSGTGKE-LSRRPYAPGQHGQDRRGSLSEYGLQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-LTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI ++++SK L V EA + VP +++ + + M T Sbjct: 119 HITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVSRVP-FVNFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVEFY+R Sbjct: 178 VRLPDREE---LDANIDEALVVEFYNR 201 >gi|50122927|ref|YP_052094.1| 30S ribosomal protein S4 [Pectobacterium atrosepticum SCRI1043] gi|227115248|ref|ZP_03828904.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328925|ref|ZP_03832949.1| 30S ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253690159|ref|YP_003019349.1| ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|61215522|sp|Q6CZZ4|RS4_ERWCT RecName: Full=30S ribosomal protein S4 gi|259495287|sp|C6DFS4|RS4_PECCP RecName: Full=30S ribosomal protein S4 gi|49613453|emb|CAG76904.1| 30S ribosomal subunit protein S4 [Pectobacterium atrosepticum SCRI1043] gi|251756737|gb|ACT14813.1| ribosomal protein S4 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|262370554|ref|ZP_06063879.1| ribosomal protein S4 [Acinetobacter johnsonii SH046] gi|262314354|gb|EEY95396.1| ribosomal protein S4 [Acinetobacter johnsonii SH046] Length = 208 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HG R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKAAKAPGQHGGARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ ++H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAVELAAQRGIPSWMEIDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|225544126|ref|YP_002720114.1| rps4 [Jatropha curcas] gi|224979567|gb|ACN72694.1| rps4 [Jatropha curcas] Length = 201 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGIASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK DVI V+ + K A + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDVITVRDEQKSRAMIPNYLDSSPQEELPKHLTLHPIQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WGGLKINELLVVEYYSR 199 >gi|48527379|gb|AAT45822.1| small ribosomal protein 4 [Plagiochila hakkodensis] Length = 202 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGISPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 IAINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 SQMINR---EWINLKINELLVVEYYSR 200 >gi|226939211|ref|YP_002794282.1| 30S ribosomal protein S4 [Laribacter hongkongensis HLHK9] gi|254764593|sp|C1DAU2|RS4_LARHH RecName: Full=30S ribosomal protein S4 gi|226714135|gb|ACO73273.1| RpsD [Laribacter hongkongensis HLHK9] Length = 206 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++R PG HG ++ + S +G+ LR Sbjct: 1 MARYTGPKCKLARREGTDLFLKSARRSIDSKCKLDSR---PGQHG-AKQPRLSDYGIHLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EA+R +G T NL+ LESRLD +VYR + T +R Sbjct: 57 EKQKIRRIYG-VLERQFRKYFAEAERRKGSTGENLLQILESRLDNVVYRMGYGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG VNI SY+ K GDV+ V++KSK+ + E+ LAE+ P ++SV+ Sbjct: 116 QLVSHKAIVVNGEVVNIPSYQVKAGDVVSVREKSKKQVRIAESLALAEQIGFPGWVSVDP 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF P + + LVVEFYS+ Sbjct: 176 KKMEGTFKNAPERSE---LSSDINEQLVVEFYSK 206 >gi|118625985|emb|CAL39314.1| small ribosomal protein 4 [Symphyogyna podophylla] Length = 202 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G + +RS K S + ++L KQK++ Sbjct: 1 MSRYRGPRAKIIRRLGA-LPGLSHEMIGSRSGYINQ--LAANKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARGAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 ++VN +V+I SY CK DVI ++ + + + + + L ER +P +++ + + Sbjct: 117 IIVNDDTVDIPSYNCKPQDVITIRDRRESQSVITKNINLFRERRIPNHLTFDSTRFCGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---EWIGLKINELLVVEYYSR 200 >gi|283788068|ref|YP_003367933.1| 30S ribosomal subunit protein S4 [Citrobacter rodentium ICC168] gi|282951522|emb|CBG91221.1| 30S ribosomal subunit protein S4 [Citrobacter rodentium ICC168] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M T+ R P + +L+VE YS+ Sbjct: 176 GKMEGTYKRKPER---SDLSADINEHLIVELYSK 206 >gi|330997339|ref|ZP_08321190.1| ribosomal protein S4 [Paraprevotella xylaniphila YIT 11841] gi|329570713|gb|EGG52429.1| ribosomal protein S4 [Paraprevotella xylaniphila YIT 11841] Length = 201 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKSRIARRFGEAIFGPDKV-LSKRNFPPGQHGNNRRKKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A R+ G T L+ LE RLD +VYR PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNMFEKAARTSGITGEILLQNLECRLDNVVYRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G +I V++KSK L + A +I + + + Sbjct: 119 IIVDGEVVNIPSYAVKPGQIIGVREKSKSLEVIANALAGFNHSKYPWIEWDENTKSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|329298510|ref|ZP_08255846.1| 30S ribosomal protein S4 [Plautia stali symbiont] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGGQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 TKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|48527369|gb|AAT45817.1| small ribosomal protein 4 [Plagiochila dura] Length = 202 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI+RR G K+ + SY K S + ++L QK++ Sbjct: 1 MSRYRGPRVKINRRXGSLPGLTSKALKSKSSYI---DRSTSNKKISQYRIRLEENQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYSCEPGDIITIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|55821964|ref|YP_140406.1| 30S ribosomal protein S4 [Streptococcus thermophilus LMG 18311] gi|55823881|ref|YP_142322.1| 30S ribosomal protein S4 [Streptococcus thermophilus CNRZ1066] gi|55737949|gb|AAV61591.1| 30S ribosomal protein S4 [Streptococcus thermophilus LMG 18311] gi|55739866|gb|AAV63507.1| 30S ribosomal protein S4 [Streptococcus thermophilus CNRZ1066] Length = 217 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 15 MSRYTGPSWKQSRRLGFSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 73 Query: 61 YYGDISEKKFRSIFKEADRSRGDT-SHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SEK+FR++F +A + +G T N + LE RLD +VYR T ARQFVNH Sbjct: 74 SYG-LSEKQFRNLFVQATKVKGGTLGFNFMILLERRLDNVVYRLGLATTRRQARQFVNHG 132 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 133 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-ATIGRPAFVSFDAEKLEGSL 191 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 192 TRLPERDE---INPEINEALVVEFYNK 215 >gi|259909976|ref|YP_002650332.1| 30S ribosomal protein S4 [Erwinia pyrifoliae Ep1/96] gi|292489825|ref|YP_003532715.1| 30S ribosomal protein S4 [Erwinia amylovora CFBP1430] gi|292900867|ref|YP_003540236.1| 30S ribosomal protein S4 [Erwinia amylovora ATCC 49946] gi|224965598|emb|CAX57130.1| 30S ribosomal protein S4 [Erwinia pyrifoliae Ep1/96] gi|283480075|emb|CAY75991.1| 30S ribosomal protein S4 [Erwinia pyrifoliae DSM 12163] gi|291200715|emb|CBJ47848.1| 30S ribosomal subunit protein S4 [Erwinia amylovora ATCC 49946] gi|291555262|emb|CBA23541.1| 30S ribosomal protein S4 [Erwinia amylovora CFBP1430] gi|312174007|emb|CBX82260.1| 30S ribosomal protein S4 [Erwinia amylovora ATCC BAA-2158] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 TKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|222109617|ref|YP_002551881.1| 30S ribosomal protein s4 [Acidovorax ebreus TPSY] gi|254764586|sp|B9MBW1|RS4_DIAST RecName: Full=30S ribosomal protein S4 gi|221729061|gb|ACM31881.1| ribosomal protein S4 [Acidovorax ebreus TPSY] Length = 207 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 86/214 (40%), Positives = 133/214 (62%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ A+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIASYLVKAGDVVAVREKSKKQARIVEALQLAQQVGMPVWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + TF ++P + + + +L+VE YSR Sbjct: 177 DKVEGTFKKVPDRDE---FGADINESLIVELYSR 207 >gi|125719124|ref|YP_001036257.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK36] gi|125499041|gb|ABN45707.1| 30S ribosomal protein S4, putative [Streptococcus sanguinis SK36] gi|325686442|gb|EGD28471.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK72] gi|325698067|gb|EGD39948.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK160] gi|327463801|gb|EGF10117.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1057] gi|327467659|gb|EGF13156.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK330] gi|327471574|gb|EGF17017.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK408] gi|328945138|gb|EGG39293.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1087] Length = 245 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 43 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 101 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 102 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 160 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 161 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 219 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 220 TRLPERDE---INPEINEALIVEFYNK 243 >gi|297569396|ref|YP_003690740.1| ribosomal protein S4 [Desulfurivibrio alkaliphilus AHT2] gi|296925311|gb|ADH86121.1| ribosomal protein S4 [Desulfurivibrio alkaliphilus AHT2] Length = 209 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR L+ + K RSY PG HGQ R K S + LQLR Sbjct: 1 MARYTGAVCRQCRREKLKLFLKGDRCYSDKCSFERRSYAPGQHGQARLRKVSDYALQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F EA+R RG T L+ LESRLD +VYR F + AR Sbjct: 61 KQKVKRIYGML-EDQFRRYFDEAERRRGVTGEILLQMLESRLDNVVYRLGFAASRNQARH 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHD 173 V H H L+NGR VNI S + K GDVI +++KS+++ ++ E+ +A R VP ++ +N D Sbjct: 120 LVRHNHFLLNGRKVNIPSLQVKVGDVITLREKSREVEAIKESLAAVARRGVPTWLELNQD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P + + +Q L+VE YS+ Sbjct: 180 AFSGTVKSAPDRQE---LTMPIQEQLIVELYSK 209 >gi|77862555|gb|ABB04550.1| small ribosomal protein 4 [Riccia ciliifera] Length = 201 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTFKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYIHIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N + V+I SY CK DVI +K + K + + ++ +P +++ + + Sbjct: 117 LINNKIVDIPSYNCKPKDVITIKDRQKSQLIITKNLNFFQKQKIPNHLTFDLIQLKGLIN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 QVVDR---EWIYLKINELLVVEYYSR 199 >gi|16762867|ref|NP_458484.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144354|ref|NP_807696.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027591|ref|ZP_03342038.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052884|ref|ZP_03345762.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425775|ref|ZP_03358525.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580697|ref|ZP_03362523.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612395|ref|ZP_03370221.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647330|ref|ZP_03377383.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824201|ref|ZP_06543796.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25009212|sp|Q8Z1X4|RS4_SALTI RecName: Full=30S ribosomal protein S4 gi|25294504|pir||AI1008 30S ribosomal chain protein S4 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505174|emb|CAD09170.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhi] gi|29139992|gb|AAO71556.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RK + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIGQAPGQHG-ARKPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ R P + +L+VE YS+ Sbjct: 179 EGTYKRKPER---SDLSADINEHLIVELYSK 206 >gi|48527389|gb|AAT45827.1| small ribosomal protein 4 [Plagiochila macrostachya] Length = 202 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + +R +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIGNKKKSRFIITKNINSFQRLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|313199704|ref|YP_004021318.1| ribosomal protein S4 [Theobroma cacao] gi|309321268|gb|ADO64811.1| ribosomal protein S4 [Theobroma cacao] gi|328924785|gb|ADO64892.2| ribosomal protein S4 [Theobroma cacao] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RTGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR+V+I SYRCK D+I + + K + + ++P++++++ Sbjct: 116 ILVNGRTVDIPSYRCKPRDIISARDEQKSRTLIQNYLDSSTHEELPKHLTLHTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---WVGLKINELLVVEYYSR 199 >gi|91208904|ref|YP_538937.1| ribosomal protein S4 [Gossypium hirsutum] gi|119368501|ref|YP_913189.1| ribosomal protein S4 [Gossypium barbadense] gi|325210932|ref|YP_004286006.1| ribosomal protein S4 [Gossypium thurberi] gi|90101660|sp|Q2L908|RR4_GOSHI RecName: Full=30S ribosomal protein S4, chloroplastic gi|125987751|sp|A0ZZ37|RR4_GOSBA RecName: Full=30S ribosomal protein S4, chloroplastic gi|85687418|gb|ABC73630.1| ribosomal protein S4 [Gossypium hirsutum] gi|119224863|dbj|BAF41249.1| Ribosomal protein S4 [Gossypium barbadense] gi|290775794|gb|ADD62290.1| ribosomal protein S4 [Gossypium thurberi] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR+V+I SYRCK D+I + + K + + ++P++++ + Sbjct: 116 ILVNGRTVDIPSYRCKPRDIISARDEQKSRTLIQNYLDSSTNEELPKHLTFHTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDRK---WVGLKINELLVVEYYSR 199 >gi|304399266|ref|ZP_07381132.1| ribosomal protein S4 [Pantoea sp. aB] gi|308188332|ref|YP_003932463.1| 30S ribosomal protein S4 [Pantoea vagans C9-1] gi|304353192|gb|EFM17573.1| ribosomal protein S4 [Pantoea sp. aB] gi|308058842|gb|ADO11014.1| 30S ribosomal protein S4 [Pantoea vagans C9-1] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGGQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VLVNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSVLVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 TKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|281422226|ref|ZP_06253225.1| ribosomal protein S4 [Prevotella copri DSM 18205] gi|281403731|gb|EFB34411.1| ribosomal protein S4 [Prevotella copri DSM 18205] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFDKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI S+ K G V+ V++KSK L + A +I + ++ F+ Sbjct: 119 IVVDGKVVNIPSFAVKPGMVVGVREKSKSLEVIEAALAGFNHSKYPWIEWDDNSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|294674745|ref|YP_003575361.1| 30S ribosomal protein S4 [Prevotella ruminicola 23] gi|294473372|gb|ADE82761.1| ribosomal protein S4 [Prevotella ruminicola 23] Length = 202 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 114/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S + + L KQK K Sbjct: 1 MARYLGPKSKIARRFGEPIFGADKV-LSRRNFPPGQHGNNRRRKMSEYAVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKAEGITGEVLLQNLESRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G V+ V++KSK L + A +I + + F+ Sbjct: 119 ITVDGQVVNIPSYAVKPGQVVAVREKSKSLEVIEAALAGFNHSKYPWIEWDENVKGGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|22297691|ref|NP_680938.1| 30S ribosomal protein S4 [Thermosynechococcus elongatus BP-1] gi|26399368|sp|P59134|RS4_THEEB RecName: Full=30S ribosomal protein S4 gi|22293868|dbj|BAC07700.1| 30S ribosomal protein S4 [Thermosynechococcus elongatus BP-1] Length = 202 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+GE K P RSY PG HGQ RK K S + L+L KQK++ Sbjct: 1 MARYRGPRLRIVRRLGELAGLTRKVP--KRSYPPGQHGQARK-KRSEYALRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-VSERQLVRYVRKARRVSGSTGQTLLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR+V+I SY+C+ GDVI V+ + V Q ++P ++ ++ + Sbjct: 117 ILVNGRNVSIPSYQCRPGDVITVRDNERSRRLVETNLQNPGLANLPSHLELDKSTLTGRV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + LVVE+YSR Sbjct: 177 TGIVERQ---WVALEVNELLVVEYYSR 200 >gi|113474211|ref|YP_720272.1| 30S ribosomal protein S4 [Trichodesmium erythraeum IMS101] gi|123352777|sp|Q119M5|RS4_TRIEI RecName: Full=30S ribosomal protein S4 gi|110165259|gb|ABG49799.1| SSU ribosomal protein S4P [Trichodesmium erythraeum IMS101] Length = 202 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSA--RRAYPPGQHGQNRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++ K+A R+ G T L+ LE RLD V+R PTI +ARQ VNH H Sbjct: 58 NYG-VCERQLLRYVKKARRAGGSTGKVLLELLEMRLDNTVFRLGMAPTIPSARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG+ V+I SY+CK G+VI VK+K K V Q ++P ++ + + +V Sbjct: 117 VTVNGKVVSIASYQCKPGEVISVKEKEKSKEMVKTNLQYPGLANIPSHLEFDKNKLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I ++ + + L+VE+YSR Sbjct: 177 NGI---VEREWVALQINELLIVEYYSR 200 >gi|311277749|ref|YP_003939980.1| ribosomal protein S4 [Enterobacter cloacae SCF1] gi|308746944|gb|ADO46696.1| ribosomal protein S4 [Enterobacter cloacae SCF1] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ K DV+ V++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVKANDVVSVREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRQPER---SDLSADINEHLIVELYSK 206 >gi|296875556|ref|ZP_06899628.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 15912] gi|312866896|ref|ZP_07727109.1| ribosomal protein S4 [Streptococcus parasanguinis F0405] gi|296433480|gb|EFH19255.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 15912] gi|311097679|gb|EFQ55910.1| ribosomal protein S4 [Streptococcus parasanguinis F0405] Length = 203 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKVKEGTVGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + D + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATVGRPAFVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|146281194|ref|YP_001171347.1| 30S ribosomal protein S4 [Pseudomonas stutzeri A1501] gi|172045574|sp|A4VHQ4|RS4_PSEU5 RecName: Full=30S ribosomal protein S4 gi|145569399|gb|ABP78505.1| ribosomal protein S4 [Pseudomonas stutzeri A1501] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 121/214 (56%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HGQRR + S +G QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGARALESKCNIET---PPGVHGQRR-GRLSDYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFSGYYKEAASRKGATGENLLQLLECRLDNVVYRMGFGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ + VNG++VNI SY+ K GDV+ V++K + + +A +L A+R E++ V+ Sbjct: 116 QLVSHKSITVNGQTVNIPSYQVKAGDVVAVREKCRNQLRIAQALELCAQRGRVEWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F +P+ + NL+VE YS+ Sbjct: 176 DKKSGVFKNVPAR---SDLSADINENLIVELYSK 206 >gi|121592837|ref|YP_984733.1| 30S ribosomal protein S4 [Acidovorax sp. JS42] gi|152060926|sp|A1W332|RS4_ACISJ RecName: Full=30S ribosomal protein S4 gi|120604917|gb|ABM40657.1| SSU ribosomal protein S4P [Acidovorax sp. JS42] Length = 207 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ A+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAAERLKGNTGANLLGLLECRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V+ KSK+ A ++EA QLA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIASYLVKAGDVVAVRDKSKKQARIVEALQLAQQVGMPVWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + TF ++P + + + +L+VE YSR Sbjct: 177 DKVEGTFKKVPDRDE---FGADINESLIVELYSR 207 >gi|328541102|gb|AEB21775.1| ribosomal protein S4 [Mastigobryum lenormandii] Length = 199 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV + Sbjct: 58 -LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAM 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|206890097|ref|YP_002249221.1| ribosomal protein S4 [Thermodesulfovibrio yellowstonii DSM 11347] gi|226695094|sp|B5YG23|RS4_THEYD RecName: Full=30S ribosomal protein S4 gi|206742035|gb|ACI21092.1| ribosomal protein S4 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 208 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR ++ + K R Y PG HG R K S +GLQLR Sbjct: 1 MARYTGSLCRLCRRESMKMFLKGTRCYTEKCAFERRKYPPGQHGHNR-GKLSDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E++F++ F++A + +G T NL+ LE RLD ++YR F ARQ Sbjct: 60 KQKVKRIYG-VMERQFKNYFEKATKMKGVTGENLLKLLERRLDNVIYRMGFAMNRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H + VNG+ V+I SY + GD+IE+ Q K+L + E+ LA +R P ++ VN + Sbjct: 119 LVRHGYFTVNGKKVDIPSYLVRPGDIIEIVQSGKELEIIKESLALAEQRGFPVWLEVNAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M FVR+P + + +Q L+VEFYS+ Sbjct: 179 EMKGKFVRLPEREE---MQLPVQEQLIVEFYSK 208 >gi|90962052|ref|YP_535968.1| 30S ribosomal protein S4 [Lactobacillus salivarius UCC118] gi|301300890|ref|ZP_07207062.1| ribosomal protein S4 [Lactobacillus salivarius ACS-116-V-Col5a] gi|122448841|sp|Q1WT66|RS4_LACS1 RecName: Full=30S ribosomal protein S4 gi|90821246|gb|ABD99885.1| SSU ribosomal protein S4P [Lactobacillus salivarius UCC118] gi|300214749|gb|ADJ79165.1| 30S ribosomal protein S4 [Lactobacillus salivarius CECT 5713] gi|300851489|gb|EFK79201.1| ribosomal protein S4 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K ++ R Y PG HGQ R+ S +GLQLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGFSLSGTGKE-LSRRPYAPGQHGQDRRGSLSEYGLQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-LTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI ++++SK L V EA + VP +++ + + M T Sbjct: 119 HITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVGRVP-FVNFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVEFY+R Sbjct: 178 VRLPDREE---LDANIDEALVVEFYNR 201 >gi|77361711|ref|YP_341286.1| 30S ribosomal protein S4 [Pseudoalteromonas haloplanktis TAC125] gi|90101708|sp|Q3IJJ5|RS4_PSEHT RecName: Full=30S ribosomal protein S4 gi|76876622|emb|CAI87844.1| 30S ribosomal subunit protein S4 [Pseudoalteromonas haloplanktis TAC125] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNGR VN+ SY D + +++KSK A ++ A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAILVNGRVVNVPSYVIAPEDTVVIREKSKTQARIIAALELAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +F R+P + L+VE YS+ Sbjct: 176 KKLEGSFKRLPER---SDLSADINEQLIVELYSK 206 >gi|34541515|ref|NP_905994.1| 30S ribosomal protein S4 [Porphyromonas gingivalis W83] gi|188995706|ref|YP_001929958.1| 30S ribosomal protein S4 [Porphyromonas gingivalis ATCC 33277] gi|41017819|sp|Q7MTN9|RS4_PORGI RecName: Full=30S ribosomal protein S4 gi|226699103|sp|B2RLW6|RS4_PORG3 RecName: Full=30S ribosomal protein S4 gi|34397832|gb|AAQ66893.1| ribosomal protein S4 [Porphyromonas gingivalis W83] gi|188595386|dbj|BAG34361.1| 30S ribosomal protein S4 [Porphyromonas gingivalis ATCC 33277] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ G+ ++G K ++ ++Y PG HG R+ K S +GLQLR KQK K Sbjct: 1 MARYTGPKSKIARKFGDPIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGLQLREKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR +F A R++G T LI FLE+RLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLEKQFRHLFHRAQRAKGVTGELLIQFLEARLDNVVFRLGIAPTRSAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G VNI SY K G VI V+++SK L + +A ++ + ++ + Sbjct: 119 ITVDGSVVNIPSYSVKPGQVIGVRERSKSLEVIADALTGFNHSKYPWMEWDQSSLSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HMPDRTD---IPENIKEQLIVELYSK 201 >gi|261823208|ref|YP_003261314.1| 30S ribosomal protein S4 [Pectobacterium wasabiae WPP163] gi|261607221|gb|ACX89707.1| ribosomal protein S4 [Pectobacterium wasabiae WPP163] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QMVSHKAIMVNGRVVSIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 AKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|90414980|ref|ZP_01222942.1| 30S ribosomal protein S4 [Photobacterium profundum 3TCK] gi|161936335|ref|YP_128585.2| 30S ribosomal protein S4 [Photobacterium profundum SS9] gi|152031675|sp|Q6LV92|RS4_PHOPR RecName: Full=30S ribosomal protein S4 gi|90323919|gb|EAS40519.1| 30S ribosomal protein S4 [Photobacterium profundum 3TCK] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRTYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG VN+ S++ DV+ +++K+K A + A ++A +R++P ++ V++ + Sbjct: 119 SHKAILVNGTVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNSKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEHLIVELYSK 206 >gi|3098148|gb|AAC15522.1| small ribosomal protein 4 [Encalypta rhaptocarpa] Length = 199 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +V+R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A +++ +++ VP ++S + +I Sbjct: 117 NDCIVNIPSYRCKPQDFISIKDRQKSQAIIIKNIDFSQKSKVPNHLSFDSLQKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|148263164|ref|YP_001229870.1| 30S ribosomal protein S4 [Geobacter uraniireducens Rf4] gi|189045382|sp|A5GAU5|RS4_GEOUR RecName: Full=30S ribosomal protein S4 gi|146396664|gb|ABQ25297.1| SSU ribosomal protein S4P [Geobacter uraniireducens Rf4] Length = 208 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R +K S +G+QLR Sbjct: 1 MARYTGPSCRLCRRENTELFLKGERCYTDKCAIKRRNYPPGQHGQGR-TKTSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR F+ ADR +G T NL+ LE RLD I YR F + ARQ Sbjct: 60 KQKVRRIYG-ILENQFRGYFERADRLKGVTGENLLFLLERRLDNIAYRLGFASSRIEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR V I S + K GDV+E+++KS+++A + E+ + + R +P+++ ++ Sbjct: 119 LVRHGHFTLNGRKVTIPSIQVKAGDVLELREKSRKVACINESLEAVVRRGIPQWLELDKG 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +D+ P +Q L+VE YS+ Sbjct: 179 AYKGAVKTLPAR-EDITMP--IQEQLIVELYSK 208 >gi|159161255|ref|YP_001542533.1| ribosomal protein S4 [Cuscuta exaltata] gi|172048131|sp|A8W3C6|RR4_CUSEX RecName: Full=Plastid 30S ribosomal protein S4 gi|158938680|gb|ABW83697.1| ribosomal protein S4 [Cuscuta exaltata] Length = 201 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P R L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPRTVR----DLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + A +++G T LI LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLINYVRIARKAKGSTGEILIQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 + VNG V+I SYRCK D+I K K K A + + + ++P +++++ Sbjct: 116 IFVNGHIVDIPSYRCKPRDIITSKDKPKSGALIKNSIEAFPREELPNHLTLHPAPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 NQIIDTK---WVGLKINELLVVEYYSR 199 >gi|222153933|ref|YP_002563110.1| 30S ribosomal protein S4 [Streptococcus uberis 0140J] gi|254764614|sp|B9DWC7|RS4_STRU0 RecName: Full=30S ribosomal protein S4 gi|222114746|emb|CAR43894.1| 30S ribosomal protein S4 [Streptococcus uberis 0140J] Length = 203 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMILLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|313889497|ref|ZP_07823143.1| ribosomal protein S4 [Streptococcus pseudoporcinus SPIN 20026] gi|313122109|gb|EFR45202.1| ribosomal protein S4 [Streptococcus pseudoporcinus SPIN 20026] Length = 203 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + K S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRGKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|146313361|ref|YP_001178435.1| 30S ribosomal protein S4 [Enterobacter sp. 638] gi|172046002|sp|A4WFA4|RS4_ENT38 RecName: Full=30S ribosomal protein S4 gi|145320237|gb|ABP62384.1| SSU ribosomal protein S4P [Enterobacter sp. 638] Length = 206 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRTYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQVKANDVVCIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 SKMEGTFKRQPER---SDLSADINEHLIVELYSK 206 >gi|26399097|sp|P59138|RR4_CYABU RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504377|emb|CAC80633.1| small ribosomal protein 4 [Cyathophorum bulbosum] Length = 202 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---TQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMFPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SY+CK D I +K + K A + + + ++ +P +++ N+ Sbjct: 117 ILVNGPIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKYKIPNHLTYNYLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|222103560|gb|ACM44309.1| small ribosomal protein subunit 4 [Aulacomnium turgidum] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTTKTPQLKSSSI---DQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + L ++ +P +++ + Sbjct: 117 ILVNDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|289066816|ref|YP_003434334.1| ribosomal protein S4 [Vigna radiata] gi|259020003|gb|ACV90201.1| ribosomal protein S4 [Vigna radiata] Length = 201 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGYLPGLTSKKPTVKNEF----RNQSRFSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + +++G T L+ LE RLD I++R TI ARQF+NHRH Sbjct: 57 HYG-LTERQLLKYVRISGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQFINHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K + K + A +P +++V+ Sbjct: 116 VLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIQNYLDSAPHEKLPNHLTVHPFQYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 NQIIDNK---WVGLKINELLVVEYYSR 199 >gi|157377427|ref|YP_001476027.1| 30S ribosomal protein S4 [Shewanella sediminis HAW-EB3] gi|189045400|sp|A8G1C6|RS4_SHESH RecName: Full=30S ribosomal protein S4 gi|157319801|gb|ABV38899.1| ribosomal protein S4 [Shewanella sediminis HAW-EB3] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL++ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DVI +++KSK+ A ++ A ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSANDVISIREKSKKQARIIAALEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 TKMEGAFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|323148908|ref|YP_004222463.1| ribosomal protein S4 [Smilax china] gi|308742599|gb|ADO33450.1| ribosomal protein S4 [Smilax china] Length = 201 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KSGSDLKNQLRSRKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + + A + + R ++P++++++ Sbjct: 116 ILVNGRVVDIPSYRCKPQDIITPKDEQRSKALIQNYIASSPREELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|195984192|gb|ACG63786.1| rps4 [Costesia spongiosa] Length = 199 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMALTIPEARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDRQKSQAMITKNIDFSQKSKVPNHLTFNSLQKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLEINELLVVEYYSR 197 >gi|67035574|gb|AAY62718.1| small ribosomal protein subunit 4 [Oreoweisia laxifolia] Length = 199 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQPTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|78189781|ref|YP_380119.1| 30S ribosomal protein S4 [Chlorobium chlorochromatii CaD3] gi|90101681|sp|Q3APJ9|RS4_CHLCH RecName: Full=30S ribosomal protein S4 gi|78171980|gb|ABB29076.1| SSU ribosomal protein S4P [Chlorobium chlorochromatii CaD3] Length = 203 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 119/207 (57%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALAPKAEKYLERRPFPPGQHGQGRKGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE RLD IV+RA F P+ ARQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNIVFRAGFSPSRAGARQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 V VNG+ V+I SY DV+E +QKSK +++V ++ E +P +I V+ + A F Sbjct: 120 VTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVTDSLNKTPESRIPAWIQVDKAHQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P LVVE YS+ Sbjct: 180 LSVPERAD---IQEEFNEQLVVELYSK 203 >gi|302877826|ref|YP_003846390.1| 30S ribosomal protein S4 [Gallionella capsiferriformans ES-2] gi|302580615|gb|ADL54626.1| ribosomal protein S4 [Gallionella capsiferriformans ES-2] Length = 209 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K + RR GE L+ + K V R+Y PG HGQRR ++ S +G QLR Sbjct: 1 MARNLDAKCRKCRREGEKLFLKGEKCFTDKCAVERRAYPPGQHGQRRNTRLSEYGGQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR +K+A+ SRG T +L+ LESRLD + YR F + ARQ Sbjct: 61 KQKVRRIYG-VLERQFRLTYKKAEASRGITGESLLQLLESRLDNVSYRMGFGASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H +LVNG+ VNI SY+ + GDV+EV +KSK + A AE R PE+I ++ Sbjct: 120 VVRHNALLVNGKRVNIPSYQVRPGDVVEVAEKSKAQLRIKAAIAAAETRGFPEWIEMDTK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + P + +LVVE YS+ Sbjct: 180 AFKGTFKANPQRAE---LPATINEHLVVELYSK 209 >gi|118626089|emb|CAL39348.1| small ribosomal protein 4 [Cephaloziella varians] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD+I +K K K + + + ++ +P +++ + + + Sbjct: 117 ISVNSNLVDIPSYNCEPGDIITIKNKQKSQSIISKNLNSFQKSKIPSHLTFDLRQLQGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQ---KVNREWVNLKINELLVVEYYSR 200 >gi|161523454|ref|YP_001578466.1| 30S ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|189351773|ref|YP_001947401.1| 30S ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|221201590|ref|ZP_03574628.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2M] gi|221207335|ref|ZP_03580345.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2] gi|221213473|ref|ZP_03586448.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD1] gi|226697816|sp|A9ADL8|RS4_BURM1 RecName: Full=30S ribosomal protein S4 gi|160340883|gb|ABX13969.1| ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|189335795|dbj|BAG44865.1| small subunit ribosomal protein S4 [Burkholderia multivorans ATCC 17616] gi|221166925|gb|EED99396.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD1] gi|221172923|gb|EEE05360.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2] gi|221178406|gb|EEE10815.1| 30S ribosomal protein S4 [Burkholderia multivorans CGD2M] Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IGGDINESLIVELYSR 207 >gi|170718273|ref|YP_001785291.1| 30S ribosomal protein S4 [Haemophilus somnus 2336] gi|189045384|sp|B0UX38|RS4_HAES2 RecName: Full=30S ribosomal protein S4 gi|168826402|gb|ACA31773.1| ribosomal protein S4 [Haemophilus somnus 2336] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQREKPTWLEVEA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|330815273|ref|YP_004358978.1| 30S ribosomal protein S4 [Burkholderia gladioli BSR3] gi|327367666|gb|AEA59022.1| 30S ribosomal protein S4 [Burkholderia gladioli BSR3] Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V H+ + VNG NI S + K GD+I +++KSK+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVGHKAITVNGIVSNIPSLQVKAGDIIAIREKSKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAE---IAGDINESLIVELYSR 207 >gi|224543759|ref|ZP_03684298.1| hypothetical protein CATMIT_02975 [Catenibacterium mitsuokai DSM 15897] gi|224523327|gb|EEF92432.1| hypothetical protein CATMIT_02975 [Catenibacterium mitsuokai DSM 15897] Length = 201 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G ++ K +N R Y PG HGQ+R K + +GLQL KQK++ Sbjct: 1 MARYTGPIWKKSRRLGFSVLENGKE-LNKRPYAPGQHGQKRH-KSTEYGLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+EK+F + F A + G T N + LESRLD +VYR F T AARQ VNH H Sbjct: 59 MYG-INEKQFHNTFDRASKMEGVTGANFLFLLESRLDNVVYRMGFATTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +L+NG +I S R GDVI VK++S+QL + A + A+ P ++ V+ + F Sbjct: 118 ILLNGIKTDIPSCRVNPGDVITVKERSQQLDVIKTALE-AQTHTPGFVEVDAEKRTGKFT 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+Y+R Sbjct: 177 RLPERSE---LNQEINEQLIVEYYNR 199 >gi|188535254|ref|YP_001909051.1| 30S ribosomal protein S4 [Erwinia tasmaniensis Et1/99] gi|300718681|ref|YP_003743484.1| 30S ribosomal protein S4 [Erwinia billingiae Eb661] gi|226699063|sp|B2VK72|RS4_ERWT9 RecName: Full=30S ribosomal protein S4 gi|188030296|emb|CAO98185.1| 30S ribosomal protein S4 [Erwinia tasmaniensis Et1/99] gi|299064517|emb|CAX61637.1| 30S ribosomal protein S4 [Erwinia billingiae Eb661] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRTYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + +L+VE YS+ Sbjct: 176 TKMEGVFKRIPERTD---LSADINEHLIVELYSK 206 >gi|172044373|sp|A4JAR5|RS4_BURVG RecName: Full=30S ribosomal protein S4 Length = 207 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAD---IAGDINESLIVELYSR 207 >gi|109897338|ref|YP_660593.1| 30S ribosomal protein S4 [Pseudoalteromonas atlantica T6c] gi|122972198|sp|Q15X49|RS4_PSEA6 RecName: Full=30S ribosomal protein S4 gi|109699619|gb|ABG39539.1| SSU ribosomal protein S4P [Pseudoalteromonas atlantica T6c] gi|332175075|gb|AEE24329.1| ribosomal protein S4 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRIGFASTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ A ++ A +LA +R+ P +I V+ M Sbjct: 119 SHKAILVNGQVVNVPSFNVSADDVVSVREKAKKQARIVSALELAEQREKPTWIEVDSKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRVPERTD---LSAEINEQLIVELYSK 206 >gi|282880975|ref|ZP_06289666.1| ribosomal protein S4 [Prevotella timonensis CRIS 5C-B1] gi|281305198|gb|EFA97267.1| ribosomal protein S4 [Prevotella timonensis CRIS 5C-B1] Length = 201 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEYGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKADGITGEVLLQNLESRLDNIVFRLGIAPTRAAARQMVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G ++ V++K+K L + E+ +I + + F+ Sbjct: 119 IVVDGKVVNIPSYAVKPGQIVGVREKAKSLEVIEESLAGFNHSKYPWIEWDESSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HQPERAD---IPENIKEQLIVELYSK 201 >gi|255536129|ref|YP_003096500.1| 30S ribosomal protein S4 [Flavobacteriaceae bacterium 3519-10] gi|255342325|gb|ACU08438.1| SSU ribosomal protein S4p (S9e) [Flavobacteriaceae bacterium 3519-10] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 83/208 (39%), Positives = 119/208 (57%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI R+ G ++G K+ ++ PG HG +RR SK S + +QL KQK Sbjct: 1 MARYIGPKTKIARKFGAAIYGDDKNFEKRKNQPPGQHGVNKRRGSKKSEYAVQLMEKQKA 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F +++++A R++G T L+ ESRLD +VYR F T ARQ V+H Sbjct: 61 KYTYG-ILERQFANLYEKAQRAKGVTGEVLLQLCESRLDNVVYRLGFGKTRAGARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RHV VNG VNI SY K GDVI +++KSK L + A LA + E++ N + T Sbjct: 120 RHVTVNGELVNIPSYLLKAGDVIAIREKSKSLEVI--ADSLAGKANYEWLQFNDEKKEGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV P + P ++ L+VE YS+ Sbjct: 178 FVSAPER---IQIPEDIKEQLIVELYSK 202 >gi|328541126|gb|AEB21787.1| ribosomal protein S4 [Paracromastigum drucei] Length = 199 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ + SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTGKTLKSKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHIAI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCQPGDTITIRDKQKSQSIITKNINLFQDLKIPSHLTFDSRKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWIDLKINELLVVEYYSR 197 >gi|41323095|gb|AAR99777.1| small ribosomal protein 4 [Plagiochila carringtonii] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G ++ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSRTLKSKSSYI---DRSTPNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGISPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|67035728|gb|AAY62795.1| small ribosomal protein subunit 4 [Funariella curviseta] Length = 196 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K P S Q K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGVLPGLTNKIPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-I 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN Sbjct: 56 TERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVND 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I VK + K A + + +++ VP +++ N +I Sbjct: 116 CIVDIPSYRCKPDDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFNSTQKKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 -LDRESIGLKINELLVVEYYSR 194 >gi|282896815|ref|ZP_06304821.1| Ribosomal protein S4 [Raphidiopsis brookii D9] gi|281198224|gb|EFA73114.1| Ribosomal protein S4 [Raphidiopsis brookii D9] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE KS R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLTRKSA--RRAYAPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ V+H H Sbjct: 58 NYG-LTEKQMLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTISAARQLVSHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V +NGR VNI SY+C+ G+ I VK K V Q ++P ++ + + + Sbjct: 117 VTINGRVVNIASYQCRPGEEIGVKDKEASRKLVENNLQYPGLANLPNHLEFDKNKLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWVALQVNELLVVEYYSR 200 >gi|187776603|ref|ZP_02993076.1| hypothetical protein CLOSPO_00117 [Clostridium sporogenes ATCC 15579] gi|187775262|gb|EDU39064.1| hypothetical protein CLOSPO_00117 [Clostridium sporogenes ATCC 15579] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGATCRLCRREGLKLFLKGDRCYTDKCAFARRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR ++EADR RG T NL+ LE RLD +V+R + + ARQ Sbjct: 60 KQKAKRIYG-ILERQFRGYYEEADRRRGITGENLLRLLEMRLDNVVFRLGYGNSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H L+NG+ V+I SY+ DVI V KSK ++ + +P ++S N + Sbjct: 119 LVTHGHFLINGKKVDIPSYQVSANDVITVCDKSKATEKFKTFAENP-KTLPAWLSGNVEG 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ +D+ PV L+VE YS+ Sbjct: 178 FEGKVERQPAR-EDIDVPV--NETLIVELYSK 206 >gi|50346784|ref|YP_053157.1| ribosomal protein S4 [Nymphaea alba] gi|62287256|sp|Q6EW46|RR4_NYMAL RecName: Full=30S ribosomal protein S4, chloroplastic gi|50250329|emb|CAF28595.1| ribosomal protein S4 [Nymphaea alba] Length = 201 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKPRS----ASDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A ++ G T L+ LE RLD I++R TI ARQ VNH H Sbjct: 57 HYG-LTERQLLRYVRIAGKANGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K A + + ++P++++++ Sbjct: 116 ILVNGRLVDIPSYRCKPRDIITTKDKQGSRALIQNHMDSSSNAELPKHLTLHSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + L+VE+YSR Sbjct: 176 NQIIDSK---WVGLKVNELLIVEYYSR 199 >gi|148381393|ref|YP_001255934.1| ribosomal protein S4 [Clostridium botulinum A str. ATCC 3502] gi|153933367|ref|YP_001385768.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 19397] gi|153935510|ref|YP_001389175.1| 30S ribosomal protein S4 [Clostridium botulinum A str. Hall] gi|153940320|ref|YP_001392806.1| 30S ribosomal protein S4 [Clostridium botulinum F str. Langeland] gi|168178860|ref|ZP_02613524.1| ribosomal protein S4 [Clostridium botulinum NCTC 2916] gi|168181892|ref|ZP_02616556.1| 30S ribosomal protein S4 [Clostridium botulinum Bf] gi|170755638|ref|YP_001783093.1| 30S ribosomal protein S4 [Clostridium botulinum B1 str. Okra] gi|226950905|ref|YP_002805996.1| ribosomal protein S4 [Clostridium botulinum A2 str. Kyoto] gi|237796914|ref|YP_002864466.1| 30S ribosomal protein S4 [Clostridium botulinum Ba4 str. 657] gi|171769230|sp|A7FZ45|RS4A_CLOB1 RecName: Full=30S ribosomal protein S4 A gi|171769265|sp|A7GJ46|RS4A_CLOBL RecName: Full=30S ribosomal protein S4 A gi|172047868|sp|A5I7H8|RS4A_CLOBH RecName: Full=30S ribosomal protein S4 A gi|148290877|emb|CAL85013.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 3502] gi|152929411|gb|ABS34911.1| 30S ribosomal protein S4 [Clostridium botulinum A str. ATCC 19397] gi|152931424|gb|ABS36923.1| 30S ribosomal protein S4 [Clostridium botulinum A str. Hall] gi|152936216|gb|ABS41714.1| 30S ribosomal protein S4 [Clostridium botulinum F str. Langeland] gi|169120850|gb|ACA44686.1| 30S ribosomal protein S4 [Clostridium botulinum B1 str. Okra] gi|182669924|gb|EDT81900.1| ribosomal protein S4 [Clostridium botulinum NCTC 2916] gi|182674921|gb|EDT86882.1| 30S ribosomal protein S4 [Clostridium botulinum Bf] gi|226841883|gb|ACO84549.1| ribosomal protein S4 [Clostridium botulinum A2 str. Kyoto] gi|229261759|gb|ACQ52792.1| 30S ribosomal protein S4 [Clostridium botulinum Ba4 str. 657] gi|295320786|gb|ADG01164.1| 30S ribosomal protein S4 [Clostridium botulinum F str. 230613] gi|322807778|emb|CBZ05353.1| SSU ribosomal protein S4p (S9e) [Clostridium botulinum H04402 065] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGATCRLCRREGLKLFLKGDRCYTDKCAFARRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR ++EADR RG T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-ILERQFRGYYEEADRRRGITGENLLRLLEMRLDNVVYRLGYGNSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY+ DVI V KSK ++ + +P ++S N + Sbjct: 119 LVTHGHFLVNGKKVDIPSYQVSANDVITVCDKSKATEKFKTFAENP-KTLPAWLSGNVEG 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ +D+ PV L+VE YS+ Sbjct: 178 FEGKVERQPAR-EDIDVPV--NETLIVELYSK 206 >gi|48527405|gb|AAT45835.1| small ribosomal protein 4 [Plagiochila porelloides] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCELGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|118626083|emb|CAL39345.1| small ribosomal protein 4 [Pseudomarsupidium decipiens] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTFKSKSSY---VDRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTEQQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ G++I +K K K + + L + +P +++++ ++ Sbjct: 117 ISVNNDMVDIPSYNCEPGNIITIKNKRKSQLIITKNINLFQNLKIPSHLTLDSIQLLGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|48527427|gb|AAT45846.1| small ribosomal protein 4 [Plagiochila turgida] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSALNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQALLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + +R +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIGNKQKSRFIITKNINSFQRLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|328541130|gb|AEB21789.1| ribosomal protein S4 [Telaranea wallichiana] Length = 202 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + K+ RR+G K+ SY K S + ++L KQK++ + Sbjct: 2 SRYRGPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTLNKKVSQYRIRLEEKQKLRFH 58 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ Sbjct: 59 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHI 117 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 +N V+I SY C+ GDVI +K K K + + + L + +P ++ + + + Sbjct: 118 SINNNIVDIPSYNCEPGDVITIKDKQKSRSIITKNINLFQNLKIPSHLIFDSIKLCGSIN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 178 Q---TINREWINLKINELLVVEYYSR 200 >gi|331701254|ref|YP_004398213.1| 30S ribosomal protein S4 [Lactobacillus buchneri NRRL B-30929] gi|329128597|gb|AEB73150.1| ribosomal protein S4 [Lactobacillus buchneri NRRL B-30929] Length = 203 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRSKLSEYGLQLHEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLEERLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KSK L + +A + A P+Y+S + D + + Sbjct: 119 HITVDGKRVDIPSYEVQPGQVISVREKSKDLQVIKDAVE-AVVGRPQYVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 178 VRLPQREE---LDADIDESLIVEYYNK 201 >gi|67035738|gb|AAY62800.1| small ribosomal protein subunit 4 [Distichium capillaceum] Length = 199 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ + +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNIEFSQKYKVPNHLTFNSLQKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|117918681|ref|YP_867873.1| 30S ribosomal protein S4 [Shewanella sp. ANA-3] gi|152112261|sp|A0KRP8|RS4_SHESA RecName: Full=30S ribosomal protein S4 gi|117611013|gb|ABK46467.1| SSU ribosomal protein S4P [Shewanella sp. ANA-3] Length = 206 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + + PG HG RK + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLES---APGQHG-ARKPRLSEYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 116 QLVSHKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + L+VE YS+ Sbjct: 176 AKMEGAFKRIPER---SDLSAEINEQLIVELYSK 206 >gi|294337088|emb|CAQ52694.1| ribosomal protein S4 [Straminergon stramineum] Length = 202 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P L+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK---SSSLNQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|89147830|gb|ABD62763.1| ribosomal protein 4 [Lophocolea heterophylla] Length = 200 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 2 YRGPRVKIIRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ + Sbjct: 59 -LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHGHISI 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + ++ Sbjct: 118 NNYIVDIPSYNCEPGDIITIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSVNQM 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 178 INR---EWINLKINELLVVEYYSR 198 >gi|11465685|ref|NP_053829.1| ribosomal protein S4 [Porphyra purpurea] gi|1710705|sp|P51219|RR4_PORPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|1276685|gb|AAC08105.1| 30S ribosomal protein S4 [Porphyra purpurea] Length = 201 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G +L G + + R Y PG HGQ+ + KPS + ++L KQK++ Sbjct: 1 MSRYRGPRVRISRRLG-DLPGLSRKAI-KRPYPPGEHGQKPR-KPSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K A + +G T L+ LE RLD ++R PTI AARQ VNH H Sbjct: 58 NYG-LSEKQLFKYVKAAKKLQGSTGQILLQLLEMRLDNTIFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +NG+ V+I SY+CK G++I VK + V ++P ++ +N N+ Sbjct: 117 ICINGKVVSICSYQCKPGELITVKPQESSKQLVESYLAFPGLANIPSHLELNKSNLSGKI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIDR---EWVALQLNELLVVEYYSR 200 >gi|166092875|gb|ABY82394.1| ribosomal protein S4 [Silene aegyptiaca] Length = 201 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGLVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNFIDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NKIIDSK---WVGLKINELLVVEYYSR 199 >gi|166092861|gb|ABY82385.1| ribosomal protein S4 [Silene sordida] Length = 201 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTIMAKDEQKSRALIKNFLDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|225873051|ref|YP_002754510.1| ribosomal protein S4 [Acidobacterium capsulatum ATCC 51196] gi|254764560|sp|C1F615|RS4_ACIC5 RecName: Full=30S ribosomal protein S4 gi|225792033|gb|ACO32123.1| ribosomal protein S4 [Acidobacterium capsulatum ATCC 51196] Length = 209 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 115/213 (53%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + R++ PG HG+ RK+K +GLQLR Sbjct: 1 MARYTGPVCRLCRREGMKLFLKGTKCFTDKCAIEKRNFAPGQHGRDRKAKIVGYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ Y + E +FR +++A R+ G T LI LE RLD I +R F + ARQ Sbjct: 61 KQKAKRIYFTL-EGQFREYYEKASRAPGVTGELLIQQLECRLDNIAFRLGFATSRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H HV VNGR VNI S++ K GD I+++ S +L V A + P ++ V+H Sbjct: 120 IVRHGHVEVNGRKVNIPSFQVKVGDEIKIRPNSSKLVVVEMGRDFASGQPAPAWLQVDHA 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ V +P +DV PV L+VE YS+ Sbjct: 180 NLSGKVVSLPKR-EDVNLPV--NEQLIVELYSK 209 >gi|56460992|ref|YP_156273.1| 30S ribosomal protein S4 [Idiomarina loihiensis L2TR] gi|61215388|sp|Q5QXV7|RS4_IDILO RecName: Full=30S ribosomal protein S4 gi|56180002|gb|AAV82724.1| Ribosomal protein S4 [Idiomarina loihiensis L2TR] Length = 206 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG R+ + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIET---APGQHG-ARRGRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNG+ VNI S++ + DV+ V++K+K+ A + A +LA +R+ P +I V++ Sbjct: 116 QLVSHKAVVVNGQVVNIPSFKVRPEDVVSVREKAKKQARIGAALELAEQREKPVWIEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F R+P + L+VE YS+ Sbjct: 176 NKLEGAFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|255319791|ref|ZP_05360996.1| ribosomal protein S4 [Acinetobacter radioresistens SK82] gi|262380324|ref|ZP_06073478.1| ribosomal protein S4 [Acinetobacter radioresistens SH164] gi|255303110|gb|EET82322.1| ribosomal protein S4 [Acinetobacter radioresistens SK82] gi|262297770|gb|EEY85685.1| ribosomal protein S4 [Acinetobacter radioresistens SH164] Length = 207 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R +K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQSR-AKQSEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 60 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P +I V+H Sbjct: 119 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKSAIELAAQRGIPAWIEVDHSK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P P + +L+VE YS+ Sbjct: 179 FEGTFKAAPDR---SDLPAEINESLIVELYSK 207 >gi|157689474|gb|ABV65293.1| ribosomal protein S4 [Euonymus americanus] Length = 201 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRP----RVGNDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R T+ ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTVPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + K A + +VP++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSFPHEEVPKHLTLHPIQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + L+VE+YSR Sbjct: 176 NQIIDSK---SIGLKINELLIVEYYSR 199 >gi|320108369|ref|YP_004183959.1| 30S ribosomal protein S4 [Terriglobus saanensis SP1PR4] gi|319926890|gb|ADV83965.1| ribosomal protein S4 [Terriglobus saanensis SP1PR4] Length = 209 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R++ PG HGQ R K +GLQLR Sbjct: 1 MARYTGAVCRLCRRDGVKLFLKGTRCFSDKCAIEKRNFPPGQHGQARAKKIVGYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ Y + E +FR+ +++A G T L+ LE+RLD +VYR F +RQ Sbjct: 61 KQKAKRIYFTL-ETQFRAYYEKASNRTGVTGELLLQQLETRLDNVVYRLGFAIARRQSRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H HV VNGR VNI S++ K GDVIE+++KSK+L A A + P ++ ++ D Sbjct: 120 VVRHGHVNVNGRKVNIPSFQVKVGDVIELREKSKKLTIAEGAKDFAAAQSTPTWLEIDRD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N + P +D+ PV L+VE YS+ Sbjct: 180 NYSGKVIAFPKR-EDIQLPV--NEQLIVELYSK 209 >gi|152980403|ref|YP_001355076.1| 30S ribosomal protein S4 [Janthinobacterium sp. Marseille] gi|179308084|sp|A6T3H9|RS4_JANMA RecName: Full=30S ribosomal protein S4 gi|151280480|gb|ABR88890.1| small subunit ribosomal protein S4 [Janthinobacterium sp. Marseille] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG I E++FR F EADR +G+T L+ LE+RLD +VYR F T R Sbjct: 58 EKQKVKRMYG-ILERQFRRYFAEADRRKGNTGETLLKLLEARLDNVVYRMGFGSTRAEGR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VNG VNI SY+ K GDVI V++KSK+ ++EA LA + +P ++SV+ Sbjct: 117 QLVSHKAFTVNGIVVNIASYQVKPGDVIAVREKSKKQVRIVEALSLAEQSGMPSWVSVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M T+ P + + +L+VE YSR Sbjct: 177 KKMEGTYKAAPDRSE---IANDVNESLIVELYSR 207 >gi|326200283|gb|ADZ52322.1| ribosomal protein S4 [Asclepias syriaca] Length = 201 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTNKRP----RAGNDPRNQSRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI AARQFVNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQFVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK GD+I VK + K A + ++ + +++P ++ + Sbjct: 116 ILVNGHIVDIPSYRCKPGDIITVKDEQKSKALIQKSLDSSSHQELPSHLILQPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + ++ LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKIKELLVVEYYSR 199 >gi|315221587|ref|ZP_07863507.1| ribosomal protein S4 [Streptococcus anginosus F0211] gi|315189421|gb|EFU23116.1| ribosomal protein S4 [Streptococcus anginosus F0211] Length = 227 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 25 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 83 Query: 61 YYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 84 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 142 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 143 HILVDGKRVDIPSYRVSVGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 201 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y++ Sbjct: 202 TRLPERDE---INPEINEALVVEYYNK 225 >gi|34500916|ref|NP_904101.1| ribosomal protein S4 [Amborella trichopoda] gi|52783274|sp|Q70Y01|RR4_AMBTC RecName: Full=30S ribosomal protein S4, chloroplastic gi|34481631|emb|CAD45109.1| ribosomal protein S4 [Amborella trichopoda] Length = 201 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK GD + ++K + A + + ++P+++++ Sbjct: 116 ILVNGRLVDIPSYRCKPGDFVTTREKERSRALIQNHMNSSPNEELPKHLTLYSLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|328541040|gb|AEB21744.1| ribosomal protein S4 [Kurzia dendroides] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T + LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQSLKYVRIARKAKGSTGQVSLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I +KQK K + + + L + +P +++ + + + Sbjct: 117 IPINNNIVDIPSYNCEPGDIITIKQKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TINRESIDLKINELLVVEYYSR 200 >gi|48527403|gb|AAT45834.1| small ribosomal protein 4 [Plagiochila poeltii] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G ++ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSRTLKSKSSYI---DRSTPNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGISPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|325529703|gb|EGD06566.1| 30S ribosomal protein S4 [Burkholderia sp. TJI49] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGIVANVPSQQVKAGDVIAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|222103478|gb|ACM44268.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P + + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R VNI SYRCK D I +K + K A +++ +++ +P +++ N Sbjct: 117 ILVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLAFNSLENKGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDHESIGLKINELLVVEYYSR 200 >gi|300728417|ref|ZP_07061779.1| ribosomal protein S4 [Prevotella bryantii B14] gi|299774336|gb|EFI70966.1| ribosomal protein S4 [Prevotella bryantii B14] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G QL KQK K Sbjct: 1 MARYIGPKSRIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKQSEYGAQLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A +S G T L+ LESRLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLERQFRNMFDKAAKSDGITGEVLLQELESRLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G VI V++K+K L + A +I + + F+ Sbjct: 119 IVVDGAVVNIPSYSVKPGQVIGVREKAKSLEVIEGALAGFNHSKYPWIEWDENTKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HRPERAD---IPENIKEQLIVELYSK 201 >gi|41323139|gb|AAR99799.1| small ribosomal protein 4 [Plagiochila tabinensis] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGXLPGLTSKTLESKSNY---MDRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ +E RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLIEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P ++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKKKSRSIVTKNINSFQKLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|58583182|ref|YP_202198.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625021|ref|YP_452393.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710856|ref|ZP_02242063.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575513|ref|YP_001912442.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae PXO99A] gi|75508108|sp|Q5GWV8|RS4_XANOR RecName: Full=30S ribosomal protein S4 gi|123521160|sp|Q2P008|RS4_XANOM RecName: Full=30S ribosomal protein S4 gi|226732182|sp|B2SQT3|RS4_XANOP RecName: Full=30S ribosomal protein S4 gi|58427776|gb|AAW76813.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368961|dbj|BAE70119.1| 30S ribosomal protein S4 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519965|gb|ACD57910.1| ribosomal protein S4 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 208 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + + PG HG RK K S + QLR Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQK---PGQHGASRKGKLSDYATQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K+A +G+T NL+ LE+RLD + YR F T AAR Sbjct: 58 EKQKVKRIYG-LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVCYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVN 171 Q V+HR VLVNG+SVN+ SY+ K GD I + +K+++ V EA +AE+ P ++ V+ Sbjct: 117 QLVSHRCVLVNGKSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P P + L+VE YS+ Sbjct: 177 SKKFSGVFKAVPDRAD---LPSDINEALIVELYSK 208 >gi|304404108|ref|ZP_07385770.1| ribosomal protein S4 [Paenibacillus curdlanolyticus YK9] gi|304347086|gb|EFM12918.1| ribosomal protein S4 [Paenibacillus curdlanolyticus YK9] Length = 200 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K K+ RR+G +L G K + R + PG HG + K S +G+QL+ KQK++ Sbjct: 1 MSRYTGPKFKLSRRLGISLSGTGKE-LAKRPFPPGQHGANLRKKISGYGVQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR++F A + +G + N + LESRLD +VYR F + ARQ V+H H Sbjct: 60 MYG-LNEKQFRNLFDRASKQKGISGENFMFLLESRLDNLVYRLGFANSRAGARQLVSHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY GDVI ++++S+ + S+ EA + + VP Y+ +N + F+ Sbjct: 119 VTVNGKKVDIASYTVALGDVIGLRERSRSMKSIKEARE-SRSHVPNYLDLNEAALEGKFL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 178 RLPERAE---LSQDIDEKQIVEFYSR 200 >gi|83416498|gb|ABC18269.1| small ribosomal subunit protein 4 [Amphidium mougeotii] Length = 200 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVRIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A +++ +++ VP +++ N + Sbjct: 117 VNDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVDFSQKSKVPNHLTFNSLEKKGLVNK 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDQESIGLKINELLVVEYYSR 198 >gi|157689560|gb|ABV65336.1| ribosomal protein S4 [Staphylea colchica] Length = 201 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRPVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I + + K + + ++P++++++ Sbjct: 116 ILVNGCIVDIPSYRCKPQDIITARNEKKSRTLIQNYLDSSPHEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|187935054|ref|YP_001884501.1| 30S ribosomal protein S4 [Clostridium botulinum B str. Eklund 17B] gi|188590506|ref|YP_001919700.1| 30S ribosomal protein S4 [Clostridium botulinum E3 str. Alaska E43] gi|251777686|ref|ZP_04820606.1| 30S ribosomal protein S4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226697826|sp|B2UYD8|RS4_CLOBA RecName: Full=30S ribosomal protein S4 gi|226697827|sp|B2TIK3|RS4_CLOBB RecName: Full=30S ribosomal protein S4 gi|187723207|gb|ACD24428.1| 30S ribosomal protein S4 [Clostridium botulinum B str. Eklund 17B] gi|188500787|gb|ACD53923.1| 30S ribosomal protein S4 [Clostridium botulinum E3 str. Alaska E43] gi|243082001|gb|EES47891.1| 30S ribosomal protein S4 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 206 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCFTDKCAFVRRSYAPGQHGAS-KKKMSNYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ +++A+ +G T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKARRIYG-ILEGQFRTYYEKAEHMKGITGENLLKLLEMRLDNVVYRLGYGASRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY DVI V +KS+ + + +P+++ N DN Sbjct: 119 LVTHGHFLVNGKKVDICSYHVSMNDVITVCEKSRSSEKFKTFVENP-KTLPKWLEANVDN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V PS +D+ PV L+VE YS+ Sbjct: 178 YEGKVVAEPSR-EDIDVPV--NETLIVELYSK 206 >gi|113460232|ref|YP_718290.1| 30S ribosomal protein S4 [Haemophilus somnus 129PT] gi|123327085|sp|Q0I138|RS4_HAES1 RecName: Full=30S ribosomal protein S4 gi|112822275|gb|ABI24364.1| SSU ribosomal protein S4P [Haemophilus somnus 129PT] Length = 206 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDT---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVNDVVAVREKSKKQARIKASLELAEQRERPTWLEVEA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + +L+VE YS+ Sbjct: 176 AKMEGVFKRVPER---SDLSADINEHLIVELYSK 206 >gi|66990676|emb|CAI29116.1| small ribosomal protein 4 [Plagiochila stricta] Length = 198 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 ++ + + + LVVE+Y Sbjct: 177 NQMINR---EWINLKINEVLVVEYY 198 >gi|63145902|gb|AAY33889.1| small ribosomal protein 4 [Jensenia decipiens] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G L G + +RS G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRAKIIRRLGA-LPGLSHKMLGSRS---GYTNQLTANKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+L+N VNI SY CK DVI +K + + + + + L E+ +P +++ + + Sbjct: 116 HILINDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGS 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 VNQIIDR---EWISLKINELLVVEYYSR 200 >gi|67035564|gb|AAY62713.1| small ribosomal protein subunit 4 [Arctoa fulvella] Length = 199 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K K A +++ +++ VP +++ N +I Sbjct: 117 NDHIVNIPSYRCKPQDFITIKNCQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|323339475|ref|ZP_08079754.1| 30S ribosomal protein S4 [Lactobacillus ruminis ATCC 25644] gi|323093089|gb|EFZ35682.1| 30S ribosomal protein S4 [Lactobacillus ruminis ATCC 25644] Length = 202 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HGQ + K S +GLQLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYAPGQHGQNNRRKLSEYGLQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++F ++F +A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-LSERQFANLFVKAGKIREGKHGDNFMILLERRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI ++++SK L V +A + P ++S + + M + Sbjct: 119 HITVDGKRVDIPSYEVKPGQVISLRERSKNLQVVKDALEAVVGRAP-FVSFDENKMEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVE+Y++ Sbjct: 178 VRLPEREE---LDANIDEALVVEYYNK 201 >gi|194290998|ref|YP_002006905.1| 30S ribosomal protein s4 [Cupriavidus taiwanensis LMG 19424] gi|226697831|sp|B3R7E4|RS4_CUPTR RecName: Full=30S ribosomal protein S4 gi|193224833|emb|CAQ70844.1| 30S ribosomal subunit protein S4 [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSSRRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI ++++SK+ + EA LA + P +++V+ Sbjct: 117 QLVSHKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPDRAD---ISGDINESLIVELYSR 207 >gi|319946013|ref|ZP_08020262.1| 30S ribosomal protein S4 [Streptococcus australis ATCC 700641] gi|322390490|ref|ZP_08064008.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 903] gi|319747821|gb|EFW00066.1| 30S ribosomal protein S4 [Streptococcus australis ATCC 700641] gi|321142764|gb|EFX38224.1| 30S ribosomal protein S4 [Streptococcus parasanguinis ATCC 903] Length = 203 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTVGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|261867278|ref|YP_003255200.1| 30S ribosomal protein S4 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412610|gb|ACX81981.1| hypothetical protein D11S_0571 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 206 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKIDI---APGQHG-ARKPRLSDYGSQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD IVYR F T AR Sbjct: 57 EKQKVRRMYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNIVYRMGFAATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +++ P ++ V+ Sbjct: 116 QLVSHKAIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELAEQKEKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M R+P + +L+VE YS+ Sbjct: 176 AKMEGVLKRVPER---SDLSADINEHLIVELYSK 206 >gi|15675914|ref|NP_270088.1| 30S ribosomal protein S4 [Streptococcus pyogenes M1 GAS] gi|19747014|ref|NP_608150.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS8232] gi|21911369|ref|NP_665637.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS315] gi|28896741|ref|NP_803091.1| 30S ribosomal protein S4 [Streptococcus pyogenes SSI-1] gi|50915197|ref|YP_061169.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS10394] gi|71904527|ref|YP_281330.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS6180] gi|71911644|ref|YP_283194.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS5005] gi|94989474|ref|YP_597575.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS9429] gi|94991461|ref|YP_599561.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS10270] gi|94993361|ref|YP_601460.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS2096] gi|139474603|ref|YP_001129319.1| 30S ribosomal protein S4 [Streptococcus pyogenes str. Manfredo] gi|251783531|ref|YP_002997836.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|306826445|ref|ZP_07459757.1| 30S ribosomal protein S4 [Streptococcus pyogenes ATCC 10782] gi|54039513|sp|P66568|RS4_STRP3 RecName: Full=30S ribosomal protein S4 gi|54039514|sp|P66569|RS4_STRP8 RecName: Full=30S ribosomal protein S4 gi|54041965|sp|P66567|RS4_STRP1 RecName: Full=30S ribosomal protein S4 gi|61215413|sp|Q5X9C7|RS4_STRP6 RecName: Full=30S ribosomal protein S4 gi|90101729|sp|Q48QN5|RS4_STRPM RecName: Full=30S ribosomal protein S4 gi|152112264|sp|Q1J995|RS4_STRPB RecName: Full=30S ribosomal protein S4 gi|152112265|sp|Q1JJE2|RS4_STRPC RecName: Full=30S ribosomal protein S4 gi|152112266|sp|Q1JEE1|RS4_STRPD RecName: Full=30S ribosomal protein S4 gi|152112268|sp|A2RGZ8|RS4_STRPG RecName: Full=30S ribosomal protein S4 gi|13623152|gb|AAK34809.1| 30S ribosomal protein S4 [Streptococcus pyogenes M1 GAS] gi|19749271|gb|AAL98649.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS8232] gi|21905585|gb|AAM80440.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS315] gi|28811995|dbj|BAC64924.1| 30S ribosomal protein S4 [Streptococcus pyogenes SSI-1] gi|50904271|gb|AAT87986.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS10394] gi|71803622|gb|AAX72975.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS6180] gi|71854426|gb|AAZ52449.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS5005] gi|94542982|gb|ABF33031.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS9429] gi|94544969|gb|ABF35017.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS10270] gi|94546869|gb|ABF36916.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS2096] gi|134272850|emb|CAM31130.1| 30S ribosomal protein S4 [Streptococcus pyogenes str. Manfredo] gi|242392163|dbj|BAH82622.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|304431375|gb|EFM34372.1| 30S ribosomal protein S4 [Streptococcus pyogenes ATCC 10782] Length = 203 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|290890943|ref|ZP_06554007.1| hypothetical protein AWRIB429_1397 [Oenococcus oeni AWRIB429] gi|290479342|gb|EFD88002.1| hypothetical protein AWRIB429_1397 [Oenococcus oeni AWRIB429] Length = 250 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 47 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 105 Query: 60 KYYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + +G N LE+RLD++V+R T ARQ VNH Sbjct: 106 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 164 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 165 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 223 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 224 LTRYPEREE---LGADINESLIVEYYNR 248 >gi|241763534|ref|ZP_04761586.1| ribosomal protein S4 [Acidovorax delafieldii 2AN] gi|241367265|gb|EER61605.1| ribosomal protein S4 [Acidovorax delafieldii 2AN] Length = 207 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 87/214 (40%), Positives = 130/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG I EK+FR F+ AD +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-ILEKQFRRYFEAADGRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDV+ V++KSK+ + ++EA QL A+ +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIPSYLVKVGDVVAVREKSKKQSRIVEALQLAAQVGMPAWVEVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F ++P + + + +L+VE YSR Sbjct: 177 DKAEGIFKKVPDRDE---FGADINESLIVELYSR 207 >gi|114561360|ref|YP_748873.1| 30S ribosomal protein S4 [Shewanella frigidimarina NCIMB 400] gi|122301094|sp|Q089N0|RS4_SHEFN RecName: Full=30S ribosomal protein S4 gi|114332653|gb|ABI70035.1| SSU ribosomal protein S4P [Shewanella frigidimarina NCIMB 400] Length = 206 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKPRLSEYGIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEVRLDNVVYRMGFGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAGQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRVPER---SDLSADINEQLIVELYSK 206 >gi|296163296|ref|ZP_06846057.1| ribosomal protein S4 [Burkholderia sp. Ch1-1] gi|295886435|gb|EFG66292.1| ribosomal protein S4 [Burkholderia sp. Ch1-1] Length = 207 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ V+++ K+ A +LEA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER---SDIAGDINESLIVELYSR 207 >gi|118627502|emb|CAL39385.1| small ribosomal protein 4 [Douinia ovata] Length = 202 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN +V+I SY + GD+I + + K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDTVDIPSYNREPGDIITIGNRRKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 NQ---TVNREWVNLKINELLVVEYYSR 200 >gi|24371853|ref|NP_715895.1| 30S ribosomal protein S4 [Shewanella oneidensis MR-1] gi|113968568|ref|YP_732361.1| 30S ribosomal protein S4 [Shewanella sp. MR-4] gi|114045731|ref|YP_736281.1| 30S ribosomal protein S4 [Shewanella sp. MR-7] gi|26399362|sp|P59131|RS4_SHEON RecName: Full=30S ribosomal protein S4 gi|123030061|sp|Q0HNR3|RS4_SHESM RecName: Full=30S ribosomal protein S4 gi|123326989|sp|Q0I081|RS4_SHESR RecName: Full=30S ribosomal protein S4 gi|24345670|gb|AAN53340.1|AE015474_3 ribosomal protein S4 [Shewanella oneidensis MR-1] gi|113883252|gb|ABI37304.1| SSU ribosomal protein S4P [Shewanella sp. MR-4] gi|113887173|gb|ABI41224.1| SSU ribosomal protein S4P [Shewanella sp. MR-7] Length = 206 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + + PG HG RK + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLES---APGQHG-ARKPRLSEYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + L+VE YS+ Sbjct: 176 AKMEGAFKRIPER---SDLSAEINEQLIVELYSK 206 >gi|282878783|ref|ZP_06287551.1| ribosomal protein S4 [Prevotella buccalis ATCC 35310] gi|281299174|gb|EFA91575.1| ribosomal protein S4 [Prevotella buccalis ATCC 35310] Length = 201 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S FG L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKMSEFGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A +S G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKSDGITGEVLLQNLECRLDNVVFRMGIAPTRAAARQMVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G ++ V++K+K L + + +I + ++ F+ Sbjct: 119 IVVDGSVVNIPSYAVKPGQIVGVREKAKSLEVIEASLAGFNHSKYPWIEWDENSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ L+VE YS+ Sbjct: 179 HLPERAD---IPENIKEQLIVELYSK 201 >gi|41323097|gb|AAR99778.1| small ribosomal protein 4 [Plagiochila cristata] Length = 202 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++ PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFSLGLSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIVNKQKSRSIVTKNINSFQKSKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 177 NQIINR---EWINLKINELLVVEYYSR 200 >gi|118586622|ref|ZP_01544062.1| 30S ribosomal protein S4 [Oenococcus oeni ATCC BAA-1163] gi|118432937|gb|EAV39663.1| 30S ribosomal protein S4 [Oenococcus oeni ATCC BAA-1163] Length = 250 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 47 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 105 Query: 60 KYYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + +G N LE+RLD++V+R T ARQ VNH Sbjct: 106 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 164 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 165 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 223 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 224 LTRYPEREE---LGADINESLIVEYYNR 248 >gi|63191663|gb|AAY34793.1| small ribosomal protein subunit 4 [Dixonia thamnioides] gi|294337132|emb|CAQ52716.1| ribosomal protein S4 [Haplohymenium pseudotriste] gi|294337182|emb|CAQ52741.1| ribosomal protein S4 [Hypnum cupressiforme] Length = 202 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|168187786|ref|ZP_02622421.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund] gi|169294366|gb|EDS76499.1| ribosomal protein S4 [Clostridium botulinum C str. Eklund] Length = 206 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HGQ RK K S +G+QLR Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTDKCAFARRSYAPGQHGQGRK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR +++A+ RG T NL+ LE RLD +VY+ F + ARQ Sbjct: 60 KQKARRIYG-ILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY+ GDVI V++KS+ ++ + +P ++ N +N Sbjct: 119 LVTHGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAENP-KTLPAWLEGNIEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ V V + L+VE YS+ Sbjct: 178 FEGKVIAEPTR---VDIDVPVNETLIVELYSK 206 >gi|152989997|ref|YP_001355719.1| 30S ribosomal protein S4 [Nitratiruptor sp. SB155-2] gi|172048726|sp|A6Q1K3|RS4_NITSB RecName: Full=30S ribosomal protein S4 gi|151421858|dbj|BAF69362.1| 30S ribosomal protein S4 [Nitratiruptor sp. SB155-2] Length = 208 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+G +L + KS + R Y PG HGQRR K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLGVSLALKGERRLAGKSALEKRPYPPGQHGQRRS-KISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ++EK+FR++FKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VAEKQFRNLFKEANRMEGNTGENLIKLLERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH HVLV+G+ VNI S+R K G IE+++KSK + + +L + + ++ V+ + Sbjct: 119 LVNHGHVLVDGKRVNIPSFRVKPGQKIEIREKSKNNPQIQRSLELTNQTGIVPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F RIP + + ++ L+VE YS+ Sbjct: 179 KVFGIFTRIPEREE---IDIPVEERLIVELYSK 208 >gi|197364265|ref|YP_002143902.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|226695073|sp|B5BGW2|RS4_SALPK RecName: Full=30S ribosomal protein S4 gi|197095742|emb|CAR61312.1| 30S ribosomal subunit protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 206 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVNGRVVNIASYQISPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M T+ R P + +L+VE YS+ Sbjct: 176 GKMEGTYKRKPER---SDLSADINEHLIVELYSK 206 >gi|227510162|ref|ZP_03940211.1| 30S ribosomal protein S4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190367|gb|EEI70434.1| 30S ribosomal protein S4 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 231 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+ K S +GLQL+ KQK++ Sbjct: 29 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRQKLSEYGLQLKEKQKLRY 87 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + G N + LE RLD IVYR T ARQ VNH Sbjct: 88 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLERRLDNIVYRLGLATTRRQARQLVNHG 146 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G V+ V++KSK L V +A + A P+Y+S + D + + Sbjct: 147 HITVDGKRVDIPSYEVKPGQVVSVREKSKDLQVVKDAVE-AVVGRPQYVSFDADKLEGSL 205 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 206 VRLPQREE---LDADIDESLIVEYYNK 229 >gi|169350323|ref|ZP_02867261.1| hypothetical protein CLOSPI_01084 [Clostridium spiroforme DSM 1552] gi|169293106|gb|EDS75239.1| hypothetical protein CLOSPI_01084 [Clostridium spiroforme DSM 1552] Length = 201 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G + K +N R Y PG HGQ+RK KP+ +GLQL KQK++ Sbjct: 1 MSRYTGPQWKISRRLGFSTLENGKE-LNRRPYAPGQHGQKRK-KPTEYGLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F + FK A + G +N LE RLD +VYR F PT AARQ VNH H Sbjct: 59 MYG-VNEKQFHNTFKRAGKMSGIHGYNFFCLLEQRLDNVVYRLGFAPTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG +I SY K GDV+EVK+KSK LA + + + P ++ V+ M F Sbjct: 118 FLVNGVKTDIPSYTVKVGDVVEVKEKSKNLAIIKASLE-NRVHTPAFVEVDETKMSGKFT 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +L+VE+Y+R Sbjct: 177 RLPERSE---LNQEINESLIVEYYNR 199 >gi|170728985|ref|YP_001763011.1| 30S ribosomal protein S4 [Shewanella woodyi ATCC 51908] gi|226695076|sp|B1KM36|RS4_SHEWM RecName: Full=30S ribosomal protein S4 gi|169814332|gb|ACA88916.1| ribosomal protein S4 [Shewanella woodyi ATCC 51908] Length = 206 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL++ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DVI +++KSK+ A ++ A ++ ++R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSANDVISIREKSKKQARIIAALEVSSQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 TKMEGAFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|300775038|ref|ZP_07084901.1| 30S ribosomal protein S4 [Chryseobacterium gleum ATCC 35910] gi|300506853|gb|EFK37988.1| 30S ribosomal protein S4 [Chryseobacterium gleum ATCC 35910] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 120/208 (57%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI R+ G ++G K+ ++ PG HG +RR +K S + +QL KQK Sbjct: 1 MARYIGPKTKIARKFGAAIYGDDKNFEKRKNQPPGQHGPNKRRGAKKSEYAVQLAEKQKA 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F ++F +A RS+G T L+ ESRLD +VYR F T AARQ V+H Sbjct: 61 KYTYG-ILERQFANLFDKAHRSKGVTGEVLLQLCESRLDNVVYRFGFAKTRSAARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RH+ VNG +NI SY K GDVI V++KSK L V A LA + E++ N + T Sbjct: 120 RHITVNGEILNIPSYLVKAGDVIAVREKSKSLEVVTNA--LASKSNYEWLQFNDEKKEGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV P + P ++ NL+VE YS+ Sbjct: 178 FVSAPER---IQIPEDIKENLIVELYSK 202 >gi|157689476|gb|ABV65294.1| ribosomal protein S4 [Ficus sp. Moore 315] Length = 201 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKL----RAGSDLRNQLRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I V+ + K + V + R ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVRDEQKSKSLVQNYLDSSSREELPKHLTLHPFQYKGSV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---CVGLKINELLVVEYYSR 199 >gi|26399364|sp|P59132|RS4_SHIFL RecName: Full=30S ribosomal protein S4 Length = 206 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++V GR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKAIMVPGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 GKMEGTFKRKPER---SDLSADINEHLIVELYSK 206 >gi|222103474|gb|ACM44266.1| small ribosomal protein subunit 4 [Rhytidium rugosum] gi|222103550|gb|ACM44304.1| small ribosomal protein subunit 4 [Rhytidium rugosum] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQQKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIDLKINELLVVEYYSR 200 >gi|253682663|ref|ZP_04863460.1| ribosomal protein S4 [Clostridium botulinum D str. 1873] gi|253562375|gb|EES91827.1| ribosomal protein S4 [Clostridium botulinum D str. 1873] Length = 206 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HGQ RK K S +G+QLR Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTDKCAFARRSYAPGQHGQGRK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR +++A+ RG T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKARRIYG-ILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYRLGFGSSRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I S++ GDVI V++KS+ ++ + +P ++ N +N Sbjct: 119 LVTHGHFLVNGKKVDIASFKVSAGDVITVREKSRGTEKFKTFAENP-KTLPAWLQGNVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ V + L+VE YS+ Sbjct: 178 FEGKVIAEPTRTD---IDVPVNETLIVELYSK 206 >gi|67924299|ref|ZP_00517734.1| Ribosomal protein S4, bacterial and organelle form [Crocosphaera watsonii WH 8501] gi|67853848|gb|EAM49172.1| Ribosomal protein S4, bacterial and organelle form [Crocosphaera watsonii WH 8501] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQGRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLVRYMKKARRATGSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V+VNGR VNI SY+C+ GDVI V+ K V Q +VPE++ + + ++ Sbjct: 117 VMVNGRIVNIASYQCRPGDVISVRNKDHSRRLVEANMQYPGLANVPEHLEFDKNTLIGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +K + + LVVE+YSR Sbjct: 177 NDV---IKREWVALQINELLVVEYYSR 200 >gi|41323133|gb|AAR99796.1| small ribosomal protein 4 [Plagiochila sandei] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI R +G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRLLGALPGLTSKTLKSKSSYI---DRSTANKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD + R PT+ ARQ VNH H Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTILRLGMSPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD I ++ + K + V + ++ +P +++ + + + Sbjct: 117 ISINNDMVDIPSYNCEPGDSITIRNEQKSRSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 NQMIDR---EWINLQINELLVVEYYSR 200 >gi|78212331|ref|YP_381110.1| 30S ribosomal protein S4 [Synechococcus sp. CC9605] gi|123578565|sp|Q3ALH7|RS4_SYNSC RecName: Full=30S ribosomal protein S4 gi|78196790|gb|ABB34555.1| ribosomal protein S4 [Synechococcus sp. CC9605] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ + +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKKLAEANLEFPGLANVPSHLELDKSKLSAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 T---ARCEREWVALEINELLVVEYYSR 200 >gi|50086191|ref|YP_047701.1| 30S ribosomal protein S4 [Acinetobacter sp. ADP1] gi|61215531|sp|Q6F7T6|RS4_ACIAD RecName: Full=30S ribosomal protein S4 gi|49532167|emb|CAG69879.1| 30S ribosomal protein S4 [Acinetobacter sp. ADP1] Length = 207 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 118/212 (55%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPV-----NTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + PG HGQ R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKAPGQHGQAR-GKQSEYSLQLREK 59 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 60 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 118 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +L A+R +P ++ V+H Sbjct: 119 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWMDVDHSK 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 179 LEGTFKAAPDR---SDLPAEINESLIVELYSK 207 >gi|126176331|ref|YP_001052480.1| 30S ribosomal protein S4 [Shewanella baltica OS155] gi|152998773|ref|YP_001364454.1| 30S ribosomal protein S4 [Shewanella baltica OS185] gi|160873349|ref|YP_001552665.1| 30S ribosomal protein S4 [Shewanella baltica OS195] gi|217975177|ref|YP_002359928.1| 30S ribosomal protein S4 [Shewanella baltica OS223] gi|304412788|ref|ZP_07394390.1| ribosomal protein S4 [Shewanella baltica OS183] gi|307307452|ref|ZP_07587187.1| ribosomal protein S4 [Shewanella baltica BA175] gi|171704521|sp|A6WHV2|RS4_SHEB8 RecName: Full=30S ribosomal protein S4 gi|171769980|sp|A3DA48|RS4_SHEB5 RecName: Full=30S ribosomal protein S4 gi|189045397|sp|A9KWC5|RS4_SHEB9 RecName: Full=30S ribosomal protein S4 gi|254764609|sp|B8EBI1|RS4_SHEB2 RecName: Full=30S ribosomal protein S4 gi|125999536|gb|ABN63611.1| SSU ribosomal protein S4P [Shewanella baltica OS155] gi|151363391|gb|ABS06391.1| ribosomal protein S4 [Shewanella baltica OS185] gi|160858871|gb|ABX47405.1| ribosomal protein S4 [Shewanella baltica OS195] gi|217500312|gb|ACK48505.1| ribosomal protein S4 [Shewanella baltica OS223] gi|304348868|gb|EFM13284.1| ribosomal protein S4 [Shewanella baltica OS183] gi|306910240|gb|EFN40673.1| ribosomal protein S4 [Shewanella baltica BA175] gi|315265577|gb|ADT92430.1| ribosomal protein S4 [Shewanella baltica OS678] Length = 206 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARTKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRVPER---SDLSAEINEQLIVELYSK 206 >gi|118626045|emb|CAL41747.1| small ribosomal protein 4 [Jungermannia caespiticia] Length = 203 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRIKIIRRLGALPGLTGKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD I VK K K + + L ++ +P +++ N + + Sbjct: 117 ISVNNDIVDIPSYNCELGDFITVKNKQKSQLIITKNVNLFQKLKIPTHLTFNSIELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQTITR---ESVNLKINELLVVEYYSR 200 >gi|107024278|ref|YP_622605.1| 30S ribosomal protein S4 [Burkholderia cenocepacia AU 1054] gi|116688397|ref|YP_834020.1| 30S ribosomal protein S4 [Burkholderia cenocepacia HI2424] gi|170731707|ref|YP_001763654.1| 30S ribosomal protein S4 [Burkholderia cenocepacia MC0-3] gi|206558666|ref|YP_002229426.1| 30S ribosomal protein S4 [Burkholderia cenocepacia J2315] gi|254246578|ref|ZP_04939899.1| Ribosomal protein S4 [Burkholderia cenocepacia PC184] gi|123371103|sp|Q1BRX3|RS4_BURCA RecName: Full=30S ribosomal protein S4 gi|152060938|sp|A0K3Q0|RS4_BURCH RecName: Full=30S ribosomal protein S4 gi|226697814|sp|B1JU47|RS4_BURCC RecName: Full=30S ribosomal protein S4 gi|226697815|sp|B4E5E5|RS4_BURCJ RecName: Full=30S ribosomal protein S4 gi|105894467|gb|ABF77632.1| SSU ribosomal protein S4P [Burkholderia cenocepacia AU 1054] gi|116646486|gb|ABK07127.1| SSU ribosomal protein S4P [Burkholderia cenocepacia HI2424] gi|124871354|gb|EAY63070.1| Ribosomal protein S4 [Burkholderia cenocepacia PC184] gi|169814949|gb|ACA89532.1| ribosomal protein S4 [Burkholderia cenocepacia MC0-3] gi|198034703|emb|CAR50570.1| 30S ribosomal protein S4 [Burkholderia cenocepacia J2315] Length = 207 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAE---IAGDINESLIVELYSR 207 >gi|329766877|ref|ZP_08258405.1| 30S ribosomal protein S4 [Gemella haemolysans M341] gi|328837602|gb|EGF87227.1| 30S ribosomal protein S4 [Gemella haemolysans M341] Length = 200 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGENFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SY K G V+ V++KS+ L + EA ++ VPEY++ + D + + V Sbjct: 119 VLVDGKKVDIASYAVKPGQVVSVREKSRNLEIIKEAVEITNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RLPERSE---LHPEINEQLIVEYYSR 200 >gi|317495364|ref|ZP_07953733.1| ribosomal protein S4 [Gemella moribillum M424] gi|316914423|gb|EFV35900.1| ribosomal protein S4 [Gemella moribillum M424] Length = 200 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGENFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SY K G V+ V++KS+ L + EA ++ VPEY++ + D + + V Sbjct: 119 VLVDGKKVDIASYAVKPGQVVSVREKSRNLEIIKEAVEVTNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RLPERSE---LHPEINEQLIVEYYSR 200 >gi|282901762|ref|ZP_06309677.1| Ribosomal protein S4 [Cylindrospermopsis raciborskii CS-505] gi|281193379|gb|EFA68361.1| Ribosomal protein S4 [Cylindrospermopsis raciborskii CS-505] Length = 202 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE KS R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLTRKSA--RRAYAPGQHGQNRK-KRSEYAIRLEEKQKLRL 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ V+H H Sbjct: 58 NYG-LTEKQMLRYVRKARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTISAARQLVSHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V +NGR VNI SY+C+ G+ I VK K V Q ++P ++ + + + Sbjct: 117 VTINGRVVNIASYQCRPGEEIGVKDKEASRKLVENNLQYPGLANLPNHLEFDKNKLAGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NGVIER---EWVALQVNELLVVEYYSR 200 >gi|56808368|ref|ZP_00366123.1| COG0522: Ribosomal protein S4 and related proteins [Streptococcus pyogenes M49 591] Length = 203 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLKGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|258513667|ref|YP_003189889.1| 30S ribosomal protein S4 [Desulfotomaculum acetoxidans DSM 771] gi|257777372|gb|ACV61266.1| ribosomal protein S4 [Desulfotomaculum acetoxidans DSM 771] Length = 208 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K ++ RSY PG HGQ R+ K S +G QLR Sbjct: 1 MARYTGPQCKLCRREGLKLYLKGDRCYSDKCAIDRRSYPPGQHGQSRR-KVSEYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR+ F ADR +G T NL+ LE R+D +++R + ARQ Sbjct: 60 KQKVRRIYG-VLEKQFRTYFDRADRQQGITGENLLRLLERRMDNVIFRMGLGASRVEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H VNGR V+I S+ K GDVI +++ SK + E + AE+ P ++ + D Sbjct: 119 LVTHGHFTVNGRKVDIPSFLVKVGDVIGIREGSKDSPRIKELMERAAEKTRPAWLEYDSD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P + +Q +L+VE YSR Sbjct: 179 AAQGRIVALPRRDE---IDAPVQEHLIVELYSR 208 >gi|88861470|ref|ZP_01136096.1| 30S ribosomal protein S4 [Pseudoalteromonas tunicata D2] gi|88816518|gb|EAR26347.1| 30S ribosomal protein S4 [Pseudoalteromonas tunicata D2] Length = 206 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +GLQLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKGRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARIKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ V+VNG VNI SYR DV+ +++K+K+ A ++ A +LA +R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGSVVNIPSYRITADDVVVIREKAKKQARIVAALELAEQREKPTWVEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 SKMEGVFKRLPER---SDLSADINEQLIVELYSK 206 >gi|91786410|ref|YP_547362.1| 30S ribosomal protein S4 [Polaromonas sp. JS666] gi|123060350|sp|Q12G78|RS4_POLSJ RecName: Full=30S ribosomal protein S4 gi|91695635|gb|ABE42464.1| SSU ribosomal protein S4P [Polaromonas sp. JS666] Length = 207 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 89/214 (41%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRAISDKAKFDSK---PGQHGRTSGTRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRKGNTGANLLFILESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG SVNI SY K GDVI V+ KSK+ V EA +LA++ +P ++ VN Sbjct: 117 QLVSHKAITVNGNSVNIPSYMVKTGDVIAVRDKSKKQTRVTEALELAKQVGLPAWVDVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F ++P + + + +L+VE YSR Sbjct: 177 DKGEGVFKKVPDRDE---FAADVNESLIVELYSR 207 >gi|121603259|ref|YP_980588.1| 30S ribosomal protein S4 [Polaromonas naphthalenivorans CJ2] gi|152112243|sp|A1VJ39|RS4_POLNA RecName: Full=30S ribosomal protein S4 gi|120592228|gb|ABM35667.1| SSU ribosomal protein S4P [Polaromonas naphthalenivorans CJ2] Length = 207 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSK---PGQHGRTSGTRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR RG+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRRGNTGANLLSVLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GDVI V+ KSK+ + EA +LA++ +P ++ VN Sbjct: 117 QLVSHKAMTVNGQSVNIPSYMVKAGDVIAVRDKSKKQTRIAEALELAKQVGLPAWVDVNA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF ++P + + + +L+VE YSR Sbjct: 177 DKGEGTFKKVPDRDE---FAADINESLIVELYSR 207 >gi|120597013|ref|YP_961587.1| 30S ribosomal protein S4 [Shewanella sp. W3-18-1] gi|146294817|ref|YP_001185241.1| 30S ribosomal protein S4 [Shewanella putrefaciens CN-32] gi|152112262|sp|A1RED8|RS4_SHESW RecName: Full=30S ribosomal protein S4 gi|172046874|sp|A4YBV9|RS4_SHEPC RecName: Full=30S ribosomal protein S4 gi|110812360|gb|ABG91716.1| ribosomal protein S4 [Shewanella putrefaciens 200] gi|120557106|gb|ABM23033.1| SSU ribosomal protein S4P [Shewanella sp. W3-18-1] gi|145566507|gb|ABP77442.1| SSU ribosomal protein S4P [Shewanella putrefaciens CN-32] gi|319424604|gb|ADV52678.1| ribosomal protein S4 [Shewanella putrefaciens 200] Length = 206 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ V+VNGR VNI S++ DV+ +++KS+ A + A ++ A+R+ P ++ V+ Sbjct: 116 QLVSHKSVMVNGRVVNIPSFKVSANDVVSIREKSRTQARIKAALEVAAQREKPTWVEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRVPER---SDLSAEINEQLIVELYSK 206 >gi|226942802|ref|YP_002797875.1| 30S ribosomal protein S4 [Azotobacter vinelandii DJ] gi|259495268|sp|C1DKN7|RS4_AZOVD RecName: Full=30S ribosomal protein S4 gi|226717729|gb|ACO76900.1| 30S ribosomal protein S4 [Azotobacter vinelandii DJ] Length = 206 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 124/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + S + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGSRALESKCNVESAPGIHGQRR-GRLSEYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +KEA R +G T NL+ LE RLD +VYR F T +RQ + Sbjct: 60 KVRRIYG-VLERQFSGYYKEASRRKGSTGENLLQLLECRLDNVVYRMGFGATRAESRQLI 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ K GDV+ +++K+K + +A +L A+R E++ V+ + Sbjct: 119 SHKAITVNGQTVNIPSYQVKVGDVVAIREKAKNQLRIAQALELCAQRGRVEWVEVDTEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + NL+VE YS+ Sbjct: 179 SGVFKSVPAR---SDLSADINENLIVELYSK 206 >gi|302344330|ref|YP_003808859.1| ribosomal protein S4 [Desulfarculus baarsii DSM 2075] gi|301640943|gb|ADK86265.1| ribosomal protein S4 [Desulfarculus baarsii DSM 2075] Length = 209 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR + L+ + K V R+Y PG HGQ R+ K S +G+QLR Sbjct: 1 MARYRGSVCRLCRREMQKLYLKGDRCYGDKCAVERRTYPPGQHGQGRRGKASDYGIQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG ++E +FR +K A G T HNL+ LE RLD +V+R F + ARQ Sbjct: 61 KQKVKRMYG-LAENQFRLTYKRASSMHGVTGHNLLQLLERRLDNVVFRLGFANSRTQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 +V H H VNG VNI S K GDV+ V Q S++L + EA + +A R +P ++ ++ Sbjct: 120 WVRHSHFTVNGHKVNIPSALVKAGDVVAVVQTSRELGQLKEAMEAVARRTIPGWLELDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ T +P+ + + MQ L+VE YSR Sbjct: 180 DLSGTVKALPTREE---LTMPMQEQLIVELYSR 209 >gi|294337126|emb|CAQ52713.1| ribosomal protein S4 [Gollania ruginosa] Length = 202 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|290487076|gb|ADD29922.1| ribosomal protein S4 [Nerium oleander] Length = 201 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTNKRP----RAGNDLRNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + K A + ++ + ++P ++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITVKDEQKSKALIQKSLDSSPHEELPSHLILQPFQYNGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|172059366|ref|YP_001807018.1| 30S ribosomal protein S4 [Burkholderia ambifaria MC40-6] gi|226697813|sp|B1YRQ4|RS4_BURA4 RecName: Full=30S ribosomal protein S4 gi|171991883|gb|ACB62802.1| ribosomal protein S4 [Burkholderia ambifaria MC40-6] Length = 207 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAD---IAGDINESLIVELYSR 207 >gi|167838187|ref|ZP_02465046.1| 30S ribosomal protein S4 [Burkholderia thailandensis MSMB43] Length = 207 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVVSIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAD---IAGDINESLIVELYSR 207 >gi|94266329|ref|ZP_01290031.1| Ribosomal protein S4:RNA-binding S4 [delta proteobacterium MLMS-1] gi|93453083|gb|EAT03562.1| Ribosomal protein S4:RNA-binding S4 [delta proteobacterium MLMS-1] Length = 209 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 113/213 (53%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR L+ + K RSY PG HGQ R K S + +QLR Sbjct: 1 MARYTGAVCRQCRREKLKLFLKGDRCYSDKCSFERRSYAPGQHGQARLRKVSDYAMQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +F F EA+R RG T NL+ LE RLD ++YR F + AR Sbjct: 61 KQKVKRMYGML-EGQFHRYFVEAERQRGVTGENLLRLLECRLDNVIYRLGFASSRNQARH 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHD 173 V H H L+NG VNI S + K GDV+ V++KS+Q + E+ +A R VP ++ +N + Sbjct: 120 LVRHNHFLLNGHKVNIPSLQVKVGDVLTVREKSRQKGMIQESLAAMARRGVPTWLELNQE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P + + +Q L+VE YS+ Sbjct: 180 AFSGTVKSAPERQE---LTMPIQEQLIVELYSK 209 >gi|194334835|ref|YP_002016695.1| 30S ribosomal protein S4 [Prosthecochloris aestuarii DSM 271] gi|226699104|sp|B4S5A2|RS4_PROA2 RecName: Full=30S ribosomal protein S4 gi|194312653|gb|ACF47048.1| ribosomal protein S4 [Prosthecochloris aestuarii DSM 271] Length = 203 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 124/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+SK S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALAPKAEKYLERRPYAPGEHGQSRRSKISEYALQLREKQKMKF 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V H H Sbjct: 61 LYG-VLEKQFRNYYKKAVAQRGVTGDNLVKLLERRFDNVVFRAGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR VNI S+ K GD IE ++KSK + +V E+ A E +P +I V+ + A F Sbjct: 120 MLVNGRKVNIPSFLMKPGDAIEFREKSKNMDAVTESLNKAPESRIPSWIQVDKAHQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++V P LVVE YS+ Sbjct: 180 LTVPER-EEVQEPF--NEQLVVELYSK 203 >gi|294337226|emb|CAQ52762.1| ribosomal protein S4 [Papillaria crocea] Length = 202 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 TQI---LDRESIGLKINELLVVEYYSR 200 >gi|119713262|gb|ABL97328.1| ribosomal protein S4 [uncultured marine bacterium HF10_12C08] Length = 205 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 121/206 (58%), Positives = 155/206 (75%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR + KHKIDRR+ NLWGRPKSP N R Y PG HGQ+ K S +G+QL AKQK+K Sbjct: 1 MTKRVAQKHKIDRRLSVNLWGRPKSPFNLRKYRPGQHGQKHTGKLSDYGVQLNAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+++E++FR+ +KEA R +GD+ NLI+ LE RLDTIVYR+KFVPT+FAARQF+NH H Sbjct: 61 YYGNLNERQFRNCYKEAIRQKGDSGENLIAILERRLDTIVYRSKFVPTVFAARQFINHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI S KEGDV+EVK KSK++A V+E+ + ERD+P YI+V+ +TFV Sbjct: 121 VKVNGKRVNIASCLLKEGDVVEVKDKSKEMALVVESMKSQERDIPGYITVDEKKCSSTFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPY M P LV+E+YSR Sbjct: 181 RTP-QFAEVPYATQMDPKLVIEYYSR 205 >gi|113869406|ref|YP_727895.1| 30S ribosomal protein S4 [Ralstonia eutropha H16] gi|123032616|sp|Q0K644|RS4_RALEH RecName: Full=30S ribosomal protein S4 gi|113528182|emb|CAJ94527.1| SSU ribosomal protein S4 [Ralstonia eutropha H16] Length = 207 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ ++++SK+ + EA LA + P +++V+ Sbjct: 117 QLVSHKAILVNGQTLNVPSAQIKSGDVVTIREQSKKQVRIAEALSLAEQSGFPTWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPDRAD---ISGDINESLIVELYSR 207 >gi|26399190|sp|Q9M4C1|RR4_MONFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|8017421|emb|CAB92137.1| small ribosomal protein 4 [Monoclea forsteri] Length = 202 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTTKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R T+ ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMALTVPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N V+I SY CK DVI +K + K + + + ++ VP ++S + + Sbjct: 117 ILINNSMVDIPSYNCKPKDVITIKDRPKSQSIITKNLNSFQKSKVPNHLSFDLMQVKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 NQMIDR---EWILLKINELLVVEYYSR 200 >gi|89902965|ref|YP_525436.1| 30S ribosomal protein S4 [Rhodoferax ferrireducens T118] gi|122478015|sp|Q21QP8|RS4_RHOFD RecName: Full=30S ribosomal protein S4 gi|89347702|gb|ABD71905.1| SSU ribosomal protein S4P [Rhodoferax ferrireducens T118] Length = 207 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 88/214 (41%), Positives = 132/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIGDKAKFDSK---PGQHGRTSGARTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+EADR +G+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEEADRRKGNTGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GD+I V+ KSK+ ++EA QLA++ +P ++ +N Sbjct: 117 QLVSHKAMTVNGKSVNIPSYMVKAGDMIAVRDKSKKQNRIVEALQLAQQVGMPAWVEINA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF +P + + + +L+VE YSR Sbjct: 177 EKAEGTFKAVPDRDQ---FAADVNESLIVELYSR 207 >gi|254517498|ref|ZP_05129554.1| ribosomal protein S4 [Clostridium sp. 7_2_43FAA] gi|226911247|gb|EEH96448.1| ribosomal protein S4 [Clostridium sp. 7_2_43FAA] Length = 206 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGAA-KKKLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E +FR+ +++AD +G T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKARRIYG-VLESQFRAYYEKADHMKGITGENLLKLLEMRLDNVVYRLGYGASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 VNH H LVN + V+I SYR D I V +KS+ + + +P+++ N +N Sbjct: 119 LVNHGHFLVNDKKVDIPSYRVSVNDEITVTEKSRGTEKFKTFIENP-KTLPKWLEANVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V PS +D+ PV L+VE YS+ Sbjct: 178 YSGKIVAEPSR-EDIDVPV--NETLIVELYSK 206 >gi|170758349|ref|YP_001788793.1| 30S ribosomal protein S4 [Clostridium botulinum A3 str. Loch Maree] gi|169405338|gb|ACA53749.1| 30S ribosomal protein S4 [Clostridium botulinum A3 str. Loch Maree] Length = 206 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 112/212 (52%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGATCRLCRREGLKLFLKGDRCYTDKCAFARRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG I E++FR ++EADR RG T NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-ILERQFRGYYEEADRRRGITGENLLRLLEMRLDNVVYRLGYGNSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY+ DVI V KSK ++ + +P ++S N + Sbjct: 119 LVTHGHFLVNGKKVDIPSYQVSANDVITVCDKSKATEKFKTFAENP-KTLPAWLSGNVEG 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P+ V + L+VE YS+ Sbjct: 178 FEGKVERQPAR---EDMDVPVNETLIVELYSK 206 >gi|313206370|ref|YP_004045547.1| SSU ribosomal protein s4p [Riemerella anatipestifer DSM 15868] gi|312445686|gb|ADQ82041.1| SSU ribosomal protein S4P [Riemerella anatipestifer DSM 15868] gi|315023689|gb|EFT36693.1| 30S ribosomal protein S4 [Riemerella anatipestifer RA-YM] gi|325336184|gb|ADZ12458.1| Ribosomal protein S4 related protein [Riemerella anatipestifer RA-GD] Length = 202 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 83/208 (39%), Positives = 119/208 (57%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI R+ G ++G K+ R+ PG HG +RR +K S + +QL KQK Sbjct: 1 MARYIGPKTKIARKFGAAIYGDDKNFEKRRNQPPGQHGPNKRRGAKKSEYAVQLAEKQKA 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F ++FK+A S+G T L+ ESRLD +VYR F T AARQ V+H Sbjct: 61 KYTYG-ILERQFSNLFKKAHASKGVTGEVLLQLCESRLDNVVYRLGFAKTRAAARQLVSH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 RH+ VNG VNI SY K GD + V+QKSK L + A L+ + +++ N + T Sbjct: 120 RHITVNGEVVNIPSYSLKPGDKVAVRQKSKSLEVIETA--LSAKANYDWLQFNDETKEGT 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 FV +P + P ++ L+VE YS+ Sbjct: 178 FVGVPER---IQIPEDIKEQLIVELYSK 202 >gi|297717888|gb|ADI50087.1| SSU ribosomal protein S4p [Candidatus Odyssella thessalonicensis L13] Length = 204 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 161/206 (78%), Gaps = 2/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+KR ++K+KIDRR+G NLWGRPKSPVN+RSYGPG HGQ+R KPS +GLQLRAKQK+K Sbjct: 1 MTKRINAKYKIDRRLGVNLWGRPKSPVNSRSYGPGQHGQQRS-KPSDYGLQLRAKQKLKG 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG+ISE++FR +++EA R RGDTS NLI LE RLD +VYR KFV T FAARQ VNH H Sbjct: 60 YYGNISERQFRRLYQEAIRRRGDTSENLIELLERRLDAVVYRMKFVATPFAARQLVNHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ VNI S++ K+GD I + K K+ +V+ ++Q ERDVPEY++V+H M ++ Sbjct: 120 VAVNGKRVNIPSFQLKDGDEISLIGKIKENVNVIASTQSNERDVPEYMTVDHKKMEGKYI 179 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P +VPYPV M+PNLV+EFYSR Sbjct: 180 RGP-KFTEVPYPVHMEPNLVIEFYSR 204 >gi|328541096|gb|AEB21772.1| ribosomal protein S4 [Mastigobryum limbatum] Length = 199 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV + Sbjct: 58 -LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWVNLKINELLVVEYYSR 197 >gi|94995345|ref|YP_603443.1| 30S ribosomal protein S4 [Streptococcus pyogenes MGAS10750] gi|152112267|sp|Q1J462|RS4_STRPF RecName: Full=30S ribosomal protein S4 gi|94548853|gb|ABF38899.1| SSU ribosomal protein S4P [Streptococcus pyogenes MGAS10750] Length = 203 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGAL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|46810988|gb|AAT01812.1| small ribosomal protein 4 [Anastrophyllum michauxii] Length = 197 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY C+ GD+I ++ K K + V + L ++ +P +++ + + + + Sbjct: 117 DTVDIPSYNCEPGDIITIRSKQKSQSIVTKNINLFQKLKIPSHLTFDLTQLRGSVNQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TVNREWVDLKINELLVVEYYSR 195 >gi|331268441|ref|YP_004394933.1| 30S ribosomal protein S4 [Clostridium botulinum BKT015925] gi|329124991|gb|AEB74936.1| ribosomal protein S4 [Clostridium botulinum BKT015925] Length = 206 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HGQ RK K S +G+QLR Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTDKCAFARRSYAPGQHGQGRK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR +++A+ RG T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKARRIYG-ILEAQFRKYYEKAETMRGITGENLLRLLEMRLDNVVYRLGFGSSRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I S++ GDVI V++KS+ ++ + +P ++ N +N Sbjct: 119 LVTHGHFLVNGKKVDIASFKVSAGDVITVREKSRGTEKFKTFAENP-KTLPAWLQGNVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ V + L+VE YS+ Sbjct: 178 FEGKVIAEPTRTD---IDVPVNETLIVELYSK 206 >gi|222103552|gb|ACM44305.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 202 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + + + ++ +P +++ N N Sbjct: 117 ILVNDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRDSIDLKINELLVVEYYSR 200 >gi|91785440|ref|YP_560646.1| 30S ribosomal protein S4 [Burkholderia xenovorans LB400] gi|123358404|sp|Q13TJ5|RS4_BURXL RecName: Full=30S ribosomal protein S4 gi|91689394|gb|ABE32594.1| SSU ribosomal protein S4P [Burkholderia xenovorans LB400] Length = 207 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG NI S + K GDV+ V+++ K+ A +LEA LAE+ +P +++V+ Sbjct: 117 QLVSHKAIMVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGLPSWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER---SDIAGDINESLIVELYSR 207 >gi|241889823|ref|ZP_04777121.1| ribosomal protein S4 [Gemella haemolysans ATCC 10379] gi|241863445|gb|EER67829.1| ribosomal protein S4 [Gemella haemolysans ATCC 10379] Length = 200 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGENFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLV+G+ V+I SY K G V+ V++KS+ L V EA ++ VPEY++ + D + + V Sbjct: 119 VLVDGKKVDIASYAVKPGQVVSVREKSRNLEIVKEAVEITNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VE+YSR Sbjct: 178 RLPERSE---LHPEINEQLIVEYYSR 200 >gi|194477170|ref|YP_002049349.1| 30S ribosomal protein S4 [Paulinella chromatophora] gi|171192177|gb|ACB43139.1| 30S ribosomal protein S4 [Paulinella chromatophora] Length = 203 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+G+ KS R+Y PG HGQ + K S + ++L KQK++ Sbjct: 1 MARYRGPRLRITRRLGDLPGLTRKSA--KRAYPPGQHGQVARRKRSEYAIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LESRLD I +R F PT+ ARQ VNH H Sbjct: 59 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLESRLDNICFRLGFGPTVPGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNGR ++I SY+CK GD+I +++ + + +VP ++ + + Sbjct: 118 VLVNGRVLDIPSYQCKTGDIISIRESKQSRRLAETNLEFPGLANVPPHLEFDKTKLRG-- 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI S ++ + + LVVE+YSR Sbjct: 176 -RISSRIEREWVALEINELLVVEYYSR 201 >gi|67035594|gb|AAY62728.1| small ribosomal protein subunit 4 [Archidium donnellii] Length = 202 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + ++ K S + ++L KQK++ +YG Sbjct: 4 YRGPRVKIIRRLGALPGLTNKTSELKSNS---VNQSTSNKKISQYRIRLEEKQKLRFHYG 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 61 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 119 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + V++ +++ VP ++++N +I Sbjct: 120 NNCIVNIPSYRCKPQDFITIKNRQKSQSMVIKNIDFSQKYKVPNHLTLNSLEKKGLINQI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 ---LNHESIGLKINELLVVEYYSR 200 >gi|209560256|ref|YP_002286728.1| 30S ribosomal protein S4 [Streptococcus pyogenes NZ131] gi|226695085|sp|B5XJ99|RS4_STRPZ RecName: Full=30S ribosomal protein S4 gi|209541457|gb|ACI62033.1| SSU ribosomal protein S4p (S9e) [Streptococcus pyogenes NZ131] Length = 203 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++ +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLVVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLKGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|326692258|ref|ZP_08229263.1| 30S ribosomal protein S4 [Leuconostoc argentinum KCTC 3773] Length = 203 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKVSEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F S+F +A + +G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFHSLFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY+ G VI V+ KSK + + A + P+++S + D + T Sbjct: 119 HILVDGQRVDIPSYQVTPGQVISVRDKSKNIVPIQVAVESVVAR-PQFVSFDADRLEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + + L+VE+Y+R Sbjct: 178 VRSPEREE---LDADINEALIVEYYNR 201 >gi|67035630|gb|AAY62746.1| small ribosomal protein subunit 4 [Orthodicranum flagellare] Length = 200 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 10/206 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKY 61 + + +I RR+G K+P G Q K S + ++L KQK++ + Sbjct: 1 RYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFH 56 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+ Sbjct: 57 YG-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHI 115 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN R VNI SYRCK D I +K + K A +++ +++ +P +++ + Sbjct: 116 LVNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKYKIPNHLTFSSLEKKGLVN 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 QI---XDQESIGLKINELLVVEYYSR 198 >gi|294337258|emb|CAQ52778.1| ribosomal protein S4 [Rigodium implexum] Length = 202 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|296111082|ref|YP_003621463.1| 30S ribosomal protein S4 [Leuconostoc kimchii IMSNU 11154] gi|295832613|gb|ADG40494.1| 30S ribosomal protein S4 [Leuconostoc kimchii IMSNU 11154] Length = 203 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKVSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F S+F +A + +G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFHSLFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+ G VI V+ KSK + + A + + P+++S + + + + Sbjct: 119 HILVDGKRVDIPSFSVTPGQVISVRDKSKTIVPIQVAVE-SVVAHPQFVSFDSEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VE+Y+R Sbjct: 178 VRLPEREE---LDADINEALIVEYYNR 201 >gi|222103506|gb|ACM44282.1| small ribosomal protein subunit 4 [Marsupella commutata] Length = 199 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + +Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ V Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + Sbjct: 117 NNDTVDISSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TVNREWVNLKINELLVVEYYSR 197 >gi|118444508|ref|YP_877226.1| 30S ribosomal protein S4 [Clostridium novyi NT] gi|152060917|sp|A0PXX4|RS4A_CLONN RecName: Full=30S ribosomal protein S4 A gi|118134964|gb|ABK62008.1| ribosomal protein S4 [Clostridium novyi NT] Length = 206 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HGQ RK K S +G+QLR Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTDKCAFARRSYAPGQHGQGRK-KLSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR +++A+ RG T NL+ LE RLD +VY+ F + ARQ Sbjct: 60 KQKARRIYG-ILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY+ GDVI V++KS+ ++ + +P ++ N +N Sbjct: 119 LVTHGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAENP-KTLPAWLEGNIEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ V + L+VE YS+ Sbjct: 178 FEGKVIAEPTRAD---IDVPVNETLIVELYSK 206 >gi|77862545|gb|ABB04545.1| small ribosomal protein 4 [Neohodgsonia mirabilis] Length = 201 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N +V+I SY CK DVI +K + K + V + ++ +P +++ + Sbjct: 117 LINDNTVDIPSYNCKPKDVITIKNRQKSQSIVTKNLNSFQKQKIPNHLNFDLIQFKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|294337068|emb|CAQ52684.1| ribosomal protein S4 [Andoa berthelotiana] Length = 202 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|328541122|gb|AEB21785.1| ribosomal protein S4 [Acromastigum cunninghamii] Length = 198 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K+ RR+G K+ + S+ K S + ++L KQK++ +YG Sbjct: 1 RGPRVKVIRRLGALPGLTGKTLKSKSSHN---DRSTSNKKVSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH H+ +N Sbjct: 57 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISIN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNIVDIPSYNCEPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSIDQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TINREWINLKINELLVVEYYSR 196 >gi|319938287|ref|ZP_08012684.1| 30S ribosomal protein S4 [Coprobacillus sp. 29_1] gi|319806580|gb|EFW03238.1| 30S ribosomal protein S4 [Coprobacillus sp. 29_1] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + K RR+G + K ++ R Y PG HGQ+RK KP+ +GLQL KQK++ Sbjct: 1 MARYTGPQWKKSRRLGFSTLETGKE-LSKRPYAPGQHGQKRK-KPTEYGLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR+ F A + G T +N LE+RLD +VYR F T ARQ VNH H Sbjct: 59 MYG-VNEKQFRNTFFRASKMDGITGYNFFCLLETRLDNVVYRLGFATTRRQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +L+NG +I S + K GDV+ VK+KSK L + + ++ VP ++ V+ D M F+ Sbjct: 118 ILLNGVKTDIASCQVKVGDVVAVKEKSKSLEIIKTSLA-SQNHVPGFVEVDADKMEGKFI 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +L+VE+Y+R Sbjct: 177 RLPERSE---LNQEINESLIVEYYNR 199 >gi|294337130|emb|CAQ52715.1| ribosomal protein S4 [Haplohymenium longinerve] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + + +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQXXKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|328541148|gb|AEB21798.1| ribosomal protein S4 [Lepidozia laevifolia] Length = 199 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ +Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTLKPKSNYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +K K K + + + L + +P +++ + + + +I Sbjct: 117 NNNIVDIPSYNCEPGDIITIKDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 INR---EWINLKINELLVVEYYSR 197 >gi|77862539|gb|ABB04542.1| small ribosomal protein 4 [Marchantia paleacea] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKLKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N +V+I SY CK DVI +K +SK + +++ ++ +P +++ + + Sbjct: 117 LINNNTVDIPSYNCKPKDVITIKDRSKSQSIIIKNLNSFQKQKIPNHLTFDLMQIKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|146298136|ref|YP_001192727.1| 30S ribosomal protein S4 [Flavobacterium johnsoniae UW101] gi|189045380|sp|A5FN16|RS4_FLAJO RecName: Full=30S ribosomal protein S4 gi|146152554|gb|ABQ03408.1| 30S ribosomal protein S4 [Flavobacterium johnsoniae UW101] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G KS R+Y PG HG +++ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDKS-FEKRNYPPGQHGMAKKRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++F++A ++G T L+ E+RLD +V+R P+ ARQ V+HR Sbjct: 60 YSYG-ILEKQFRNLFEKASATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRGARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD + V++KSK L ++ + + V E+I+ N+D TF Sbjct: 119 HITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLSNSSH-VYEWITWNNDLKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ L+ P ++ L+VE Y++ Sbjct: 178 VSVPARLQ---IPENIKEQLIVELYNK 201 >gi|41323131|gb|AAR99795.1| small ribosomal protein 4 [Plagiochila semidecurrens] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNH H Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + L V++YSR Sbjct: 177 NQMIDR---EWINLKINELLGVKYYSR 200 >gi|290487072|gb|ADD29920.1| ribosomal protein S4 [Meliosma aff. cuneifolia Moore 333] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGKVLLQLLEMRLDNILFRLGMSSTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRC D+I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCNPRDLITAKDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|306486209|gb|ADM92746.1| ribosomal protein S4 [Franklinia alatamaha] Length = 198 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKKPRAG-------NDQSRSGKKSQYRIRLEEKQKLRF 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 54 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + + ++P+++++ Sbjct: 113 ILVNGRIVDIPSYRCKPRDIITARDEQKSRALIQNSLDSSPHEELPKHLTLYPFQYKGLV 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 173 NQIIDSK---WVGLKINELLVVEYYSR 196 >gi|294337271|emb|CAQ52784.1| ribosomal protein S4 [Taxiphyllum aomoriense] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P SY + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGILPGLTNKTPQLKSSYI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|114107048|ref|YP_740204.1| ribosomal protein S4 [Liriodendron tulipifera] gi|122221293|sp|Q0G9L7|RR4_LIRTU RecName: Full=30S ribosomal protein S4, chloroplastic gi|113200996|gb|ABI32511.1| ribosomal protein S4 [Liriodendron tulipifera] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P R G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP---RP-GSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + + ++ ++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRGEQRSRALIQNYIDSSPHEELAKHLTFHSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|294337100|emb|CAQ52700.1| ribosomal protein S4 [Dacryophyllum falcifolium] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLESSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLDKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|268316434|ref|YP_003290153.1| 30S ribosomal protein S4 [Rhodothermus marinus DSM 4252] gi|262333968|gb|ACY47765.1| ribosomal protein S4 [Rhodothermus marinus DSM 4252] Length = 200 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 127/206 (61%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G P + + Y PG HG+ R++K S + +QL+ KQK+K Sbjct: 1 MARYRGPKQKIARRFGEPIFG-PSKALERKPYPPGQHGRTRRAKESEYAVQLKEKQKVKH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A R +G T NL+ LE+RLD VYR F T ARQ V HRH Sbjct: 60 IYG-LLERQFRNLFEKATRKKGITGENLLKMLEARLDNTVYRMGFARTRRQARQLVVHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG+ VN+ SY+ + GDV+ V+ KS+QLA + E + R+ P ++ V+ M F+ Sbjct: 119 IMVNGQVVNVPSYQLRPGDVVAVRPKSRQLAVIQENIKRLRRNFP-WLEVDRKEMQGKFL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ P ++ +L+VE YS+ Sbjct: 178 DYPNR---EDIPENIREHLIVELYSK 200 >gi|170700719|ref|ZP_02891714.1| ribosomal protein S4 [Burkholderia ambifaria IOP40-10] gi|171318373|ref|ZP_02907531.1| ribosomal protein S4 [Burkholderia ambifaria MEX-5] gi|152060939|sp|Q0BJ21|RS4_BURCM RecName: Full=30S ribosomal protein S4 gi|170134389|gb|EDT02722.1| ribosomal protein S4 [Burkholderia ambifaria IOP40-10] gi|171096451|gb|EDT41350.1| ribosomal protein S4 [Burkholderia ambifaria MEX-5] Length = 207 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GD++ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAD---IAGDINESLIVELYSR 207 >gi|119512953|ref|ZP_01632015.1| 30S ribosomal protein S4 [Nodularia spumigena CCY9414] gi|119462406|gb|EAW43381.1| 30S ribosomal protein S4 [Nodularia spumigena CCY9414] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE K+ R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRIVRRLGELPGLSRKTA--RRAYPPGQHGQNRK-KRSEYAVRLEEKQKIRM 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ ++A R G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVRKARRVTGSTGQVLLQMLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG+ V+I SY+C+ G+V+ ++ + V Q ++P ++ + + Sbjct: 117 VTVNGKRVDIASYQCRPGEVVAIRDREASRKLVEANLQYPGLANLPSHLEFDKAKLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NSVIER---EWVALQVNELLVVEYYSR 200 >gi|304310039|ref|YP_003809637.1| 30S ribosomal protein S4 [gamma proteobacterium HdN1] gi|301795772|emb|CBL43971.1| 30S ribosomal protein S4 [gamma proteobacterium HdN1] Length = 206 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 116/211 (54%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK----SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + PG HG R+ + S +G QLR KQ Sbjct: 1 MARYLGPKCKLSRREGVDLGLKSGVRAHESKCRSEKAPGQHG-ERRGRLSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I EK+FR + EA R +G T NL+ LESRLD +V+R F T ARQ V Sbjct: 60 KVRRIYG-ILEKQFRGYYAEASRRKGSTGENLLQLLESRLDNVVFRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +L+NG++VNI SY+ GDV+ V++KSK + A +LA +R +I V+ Sbjct: 119 SHKAILINGKTVNIPSYQLAAGDVVSVREKSKSQLRIGAAQELAEQRGFAAWIEVDTKKR 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + P + NL+VE YS+ Sbjct: 179 EGVFKSVPER---IDLPSDINENLIVELYSK 206 >gi|48527415|gb|AAT45840.1| small ribosomal protein 4 [Plagiochila satoi] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCELGDIITIGNKKKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|91791563|ref|YP_561214.1| 30S ribosomal protein S4 [Shewanella denitrificans OS217] gi|123166579|sp|Q12ST5|RS4_SHEDO RecName: Full=30S ribosomal protein S4 gi|91713565|gb|ABE53491.1| SSU ribosomal protein S4P [Shewanella denitrificans OS217] Length = 206 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKPRLSEYGTQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ VLVNGR VNI S++ DV+ +++KS+ A + + ++ A+R+ P ++ V++ Sbjct: 116 QLVSHKTVLVNGRVVNIPSFKVSANDVVSIREKSRTQARIKASLEVAAQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 TKMEGAFKRLPER---SDLSADINEQLIVELYSK 206 >gi|26399102|sp|P59141|RR4_HYPAR RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504365|emb|CAC81026.1| small ribosomal protein 4 [Hypopterygium arbuscula] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDYVVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|323492143|ref|ZP_08097305.1| 30S ribosomal protein S4 [Vibrio brasiliensis LMG 20546] gi|323313704|gb|EGA66806.1| 30S ribosomal protein S4 [Vibrio brasiliensis LMG 20546] Length = 206 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VNI S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEQLIVELYSK 206 >gi|32034695|ref|ZP_00134833.1| COG0522: Ribosomal protein S4 and related proteins [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209247|ref|YP_001054472.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae L20] gi|165977220|ref|YP_001652813.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190151138|ref|YP_001969663.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250036|ref|ZP_07336238.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253210|ref|ZP_07339359.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246713|ref|ZP_07528783.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251082|ref|ZP_07533006.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253468|ref|ZP_07535339.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255698|ref|ZP_07537502.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257882|ref|ZP_07539638.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260150|ref|ZP_07541860.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307264487|ref|ZP_07546072.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322515611|ref|ZP_08068590.1| 30S ribosomal protein S4 [Actinobacillus ureae ATCC 25976] gi|152060927|sp|A3N381|RS4_ACTP2 RecName: Full=30S ribosomal protein S4 gi|226697792|sp|B3GZ35|RS4_ACTP7 RecName: Full=30S ribosomal protein S4 gi|226697793|sp|B0BSV5|RS4_ACTPJ RecName: Full=30S ribosomal protein S4 gi|126098039|gb|ABN74867.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877321|gb|ABY70369.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916269|gb|ACE62521.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647892|gb|EFL78099.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651099|gb|EFL81253.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852413|gb|EFM84648.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856912|gb|EFM89044.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859147|gb|EFM91189.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861375|gb|EFM93365.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863612|gb|EFM95539.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865796|gb|EFM97674.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870184|gb|EFN01943.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322118321|gb|EFX90596.1| 30S ribosomal protein S4 [Actinobacillus ureae ATCC 25976] Length = 208 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ + N PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKVRRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI SY+ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 119 LVSHKSIVVNGRVVNIPSYQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDAT 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 179 KMEGVFKRTPER---SDLSADINEHLIVELYSK 208 >gi|312795803|ref|YP_004028725.1| SSU ribosomal protein S4P [Burkholderia rhizoxinica HKI 454] gi|312167578|emb|CBW74581.1| SSU ribosomal protein S4P [Burkholderia rhizoxinica HKI 454] Length = 207 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLDT+VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDTVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+ NI S + K GDV+ V++++K+ + EA LA + + P ++SV+ Sbjct: 117 QLVSHKAITVNGQVANIPSLQVKAGDVVAVREQAKKQTRIQEALSLAEQNNFPGWVSVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + +L+VE YSR Sbjct: 177 KKFEGTFKHVPER---SDIAGDINESLIVELYSR 207 >gi|67035566|gb|AAY62714.1| small ribosomal protein subunit 4 [Symblepharis lindigii] Length = 199 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 NDHIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|26399101|sp|P59140|RR4_HYLSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504353|emb|CAC80756.1| small ribosomal protein 4 [Hylocomium splendens] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A R++G T L+ LE RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 116 HILVNDYIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337194|emb|CAQ52747.1| ribosomal protein S4 [Leptopterigynandrum sp. Koponen 46079] Length = 202 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIDLKINELLVVEYYSR 200 >gi|189162273|ref|YP_001936519.1| ribosomal protein S4 [Fagopyrum esculentum subsp. ancestrale] gi|166065359|gb|ABY79734.1| ribosomal protein S4 [Fagopyrum esculentum subsp. ancestrale] Length = 198 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + R+ R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTNKKPRDLRN-------PSRSGKRSQYRIRLEEKQKLRF 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ F+ A +++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 54 HYG-ITERQLLKYFRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D++ + K K A V + ++P++++++ Sbjct: 113 VLVNGRIVDIPSYRCKPNDIVMSRDKQKSKALVQNYLDSSHSEELPKHLTLHPFPYKGVV 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 173 NQIIDNK---WVGLKINELLVVEYYSR 196 >gi|184154963|ref|YP_001843303.1| 30S ribosomal protein S4 [Lactobacillus fermentum IFO 3956] gi|227514502|ref|ZP_03944551.1| ribosomal protein S4 [Lactobacillus fermentum ATCC 14931] gi|226699079|sp|B2GAZ1|RS4_LACF3 RecName: Full=30S ribosomal protein S4 gi|183226307|dbj|BAG26823.1| 30S ribosomal protein S4 [Lactobacillus fermentum IFO 3956] gi|227087129|gb|EEI22441.1| ribosomal protein S4 [Lactobacillus fermentum ATCC 14931] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRPYAPGDHGNDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI V++KSK L + A + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQVIAVREKSKNLDVIKGAVE-AVVARPAYVEFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + L+VEFY++ Sbjct: 178 TRLPQR---EDMNADIDEALIVEFYNK 201 >gi|330722391|gb|EGH00239.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC2047] Length = 206 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + P++++ PG+HG R+S+ S +GLQLR KQ Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLDSKCKADTIPGVHG-ARRSRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R G T NL+ LE+RLD +VYR F T ARQ V Sbjct: 60 KVRRLYG-VLEKQFRNYYKEAARLSGATGENLLQLLETRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG +VN+ SY+ K GDV+ V++K+K + A ++A +R +PE++ V+ M Sbjct: 119 SHKSITVNGETVNVPSYKIKAGDVVAVREKAKNQLRIKSALEVAGQRGMPEWVQVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F IP + P + NL+VE YS+ Sbjct: 179 SGEFKSIPERGE---LPAEINENLIVELYSK 206 >gi|78043798|ref|YP_361091.1| 30S ribosomal protein S4 [Carboxydothermus hydrogenoformans Z-2901] gi|90101680|sp|Q3A9U3|RS4_CARHZ RecName: Full=30S ribosomal protein S4 gi|77995913|gb|ABB14812.1| ribosomal protein S4 [Carboxydothermus hydrogenoformans Z-2901] Length = 208 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 113/213 (53%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + R+Y PG HG RK KP+ + LQLR Sbjct: 1 MARYTGPVCKLCRREGIKLFLKGDRCYTDKCAIARRNYAPGQHGHTRK-KPTEYALQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR F+ A+R G T NL+ LE RLD +VYR + ARQ Sbjct: 60 KQKAKRIYG-VLEAQFRRYFEMAERQPGITGENLLVILERRLDNVVYRLGLAESRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H VNGR VNI SY K GDVI +K++ K E + A + +P ++S + + Sbjct: 119 LVRHNFFTVNGRKVNIPSYLVKVGDVIALKEEKKDSPIAKEIMERAASKTLPAWLSYDAN 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N V +P K + ++ +L+VE YSR Sbjct: 179 NAVGKVEALP---KREDIDIPVEEHLIVELYSR 208 >gi|6002075|emb|CAA58946.1| ribosomal protein S4 [Ranunculus lingua] Length = 196 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRP----TPGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNFMDSSPHDELPKHLTLHPSQYKGSV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WVGLKINELLVVEY 196 >gi|74027103|gb|AAZ94653.1| ribosomal protein S4 [Cucumis sativus] gi|115432806|gb|ABI97419.1| ribosomal protein S4 [Cucumis sativus] gi|115498306|gb|ABI98748.1| ribosomal protein S4 [Cucumis sativus] Length = 201 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KTGNDLKNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K + K + + +++P+++++ Sbjct: 116 ILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVSLKINELLVVEYYSR 199 >gi|88799195|ref|ZP_01114775.1| ribosomal protein S4 [Reinekea sp. MED297] gi|88778178|gb|EAR09373.1| ribosomal protein S4 [Reinekea sp. MED297] Length = 206 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 120/214 (56%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HG R+ + S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCKLET---VPGVHG-ARRGRLSDYGIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R++G T L+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKEAARTKGATGEVLLQLLERRLDNVVYRMGFGVTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNH 172 Q V+H+ +LVNG+SVNI S++ K GDV+ V++KS + A +A P ++ V+ Sbjct: 116 QLVSHKAILVNGQSVNIPSFQVKPGDVVSVREKSANQLRIKSAVDVAATRAPVSWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P + NL+VE YS+ Sbjct: 176 KKLEGKFSAVPER---SDLSQDINENLIVELYSK 206 >gi|157960037|ref|YP_001500071.1| 30S ribosomal protein S4 [Shewanella pealeana ATCC 700345] gi|167626016|ref|YP_001676310.1| 30S ribosomal protein S4 [Shewanella halifaxensis HAW-EB4] gi|212634853|ref|YP_002311378.1| 30S ribosomal protein S4 [Shewanella piezotolerans WP3] gi|189045398|sp|B0TLY9|RS4_SHEHH RecName: Full=30S ribosomal protein S4 gi|189045399|sp|A8GYZ9|RS4_SHEPA RecName: Full=30S ribosomal protein S4 gi|226695075|sp|B8CNF7|RS4_SHEPW RecName: Full=30S ribosomal protein S4 gi|157845037|gb|ABV85536.1| ribosomal protein S4 [Shewanella pealeana ATCC 700345] gi|167356038|gb|ABZ78651.1| ribosomal protein S4 [Shewanella halifaxensis HAW-EB4] gi|212556337|gb|ACJ28791.1| Ribosomal protein S4 [Shewanella piezotolerans WP3] Length = 206 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R++G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARTKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DV+ V++KS+ A + A ++ A+R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSANDVVSVREKSRTQARIKAALEVSAQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + L+VE YS+ Sbjct: 176 TKMEGAFKRIPER---SDLSAEINEQLIVELYSK 206 >gi|186477562|ref|YP_001859032.1| 30S ribosomal protein S4 [Burkholderia phymatum STM815] gi|226697817|sp|B2JI40|RS4_BURP8 RecName: Full=30S ribosomal protein S4 gi|184194021|gb|ACC71986.1| ribosomal protein S4 [Burkholderia phymatum STM815] Length = 207 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDVI V++++K+ A +LEA LAE+ +P++++V+ Sbjct: 117 QLVSHKAITVNGVVANIPSLQVKAGDVIAVREQAKKQARILEALSLAEQGGLPQWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + +L+VE YSR Sbjct: 177 KKFEGTFKSMPER---SDIAGDINESLIVELYSR 207 >gi|41323121|gb|AAR99790.1| small ribosomal protein 4 [Plagiochila orbicularis] Length = 202 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI R+G K+ + Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIPRLGAFPGLTGKTLKSKSRYI---NRATPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIAKKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|63101103|gb|AAY33176.1| small ribosomal protein 4 [Timmia megapolitana] Length = 199 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A +++ +++ VP +++ N+ +I Sbjct: 117 NDYIVDIPSYRCKPQDFITIKNRQKSQAILMKNIDFSQKYKVPNHLTFNYLQKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|145219087|ref|YP_001129796.1| 30S ribosomal protein S4 [Prosthecochloris vibrioformis DSM 265] gi|189045392|sp|A4SCT5|RS4_PROVI RecName: Full=30S ribosomal protein S4 gi|145205251|gb|ABP36294.1| SSU ribosomal protein S4P [Chlorobium phaeovibrioides DSM 265] Length = 203 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 123/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ R+SK S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALTPKAEKYMERRPFAPGQHGQGRRSKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ +E R D +V+RA F P+ +RQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVSQRGVTGDNLVRLIERRFDNVVFRAGFAPSRAGSRQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI SY GD+IE + KSK +++V +A S+ + +P +I V+ N A F Sbjct: 120 LLVNGKKVNIPSYMVSPGDLIEFRPKSKNMSAVSDALSKTPDARIPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P V LVVE YS+ Sbjct: 180 LAVPER---VEVQEPFNEQLVVELYSK 203 >gi|118626085|emb|CAL39346.1| small ribosomal protein 4 [Jungermannia polaris] Length = 202 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + Sbjct: 117 ISVNNDIVDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+ SR Sbjct: 177 NQ---TINREWINLKINELLVVEYNSR 200 >gi|67035628|gb|AAY62745.1| small ribosomal protein subunit 4 [Chorisodontium mittenii] gi|222103508|gb|ACM44283.1| small ribosomal protein subunit 4 [Orthodicranum montanum] gi|222103538|gb|ACM44298.1| small ribosomal protein subunit 4 [Orthodicranum montanum] Length = 199 Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A +++ +++ +P +++ + + Sbjct: 116 VNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDQESIGLKINELLVVEYYSR 197 >gi|300690185|ref|YP_003751180.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum PSI07] gi|299077245|emb|CBJ49871.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum PSI07] Length = 207 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T +L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGESLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQVKAGDVVAIREKSKKQVRIAESLSLAEQTGFPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDRAD---IAGDINESLIVELYSR 207 >gi|222103476|gb|ACM44267.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 202 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P + + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A +++ +++ +P +++ N + Sbjct: 119 VNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLAFNSLENKGLINQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 179 I---LDHESIGLKINELLVVEYYSR 200 >gi|67035596|gb|AAY62729.1| small ribosomal protein subunit 4 [Eustichia longirostris] Length = 199 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTDKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A V++ +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKDRQKSRAMVIKNVDFSQKYKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|63100967|gb|AAY33108.1| small ribosomal protein 4 [Stoneobryum mirum] Length = 202 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+P S L K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVKIIRRLGVLPGLTNKTPQLKSSSANQLTSN---KKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH++ Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHII 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K + + ++ +P +++ N + Sbjct: 119 VNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKSKIPNHLTYNFLEKKGFVNQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + LVVE+YSR Sbjct: 179 IIDR---ELINLKINELLVVEYYSR 200 >gi|33357881|pdb|1P6G|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome gi|33357958|pdb|1P87|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome gi|83754042|pdb|2AVY|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|83754098|pdb|2AW7|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 30s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138056|pdb|2I2P|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|118138127|pdb|2I2U|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|157836026|pdb|2QOU|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Spectinomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836077|pdb|2QOW|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Spectinomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836130|pdb|2QOY|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Spectinomycin And Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|157836181|pdb|2QP0|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Spectinomycin And Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|158429701|pdb|2QAL|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429753|pdb|2QAN|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429811|pdb|2QB9|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 30s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429863|pdb|2QBB|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429915|pdb|2QBD|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158429967|pdb|2QBF|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430021|pdb|2QBH|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158430074|pdb|2QBJ|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431374|pdb|2Z4K|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The First 70s Ribosome, With Paromomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|158431427|pdb|2Z4M|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 30s Subunit Of The Second 70s Ribosome, With Paromomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. gi|168988791|pdb|2VHO|D Chain D, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 3 Of 4) gi|168988812|pdb|2VHP|D Chain D, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 4 Of 4) gi|197107281|pdb|3DF1|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 30s Subunit Of The First 70s Ribosome, With Hygromycin B Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|197107333|pdb|3DF3|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 30s Subunit Of The Second 70s Ribosome, With Hygromycin B Bound. The Entire Crystal Structure Contains Two 70s Ribosomes. gi|224510725|pdb|3FIH|D Chain D, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. gi|294662220|pdb|2WWL|D Chain D, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 30s, The P-Site Trna And The Tnac Leader Peptide (Part 1 Of 2). gi|308387968|pdb|3OFO|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|308387989|pdb|3OFP|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|309320026|pdb|3OFA|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|309320047|pdb|3OFB|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|309320130|pdb|3OFX|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|309320151|pdb|3OFY|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 30s Subunit Of The Second 70s Ribosome gi|315113615|pdb|3OAQ|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 30s Subunit Of The First 70s Ribosome. gi|315113636|pdb|3OAR|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 30s Subunit Of The Second 70s Ribosome. gi|329665995|pdb|3J00|D Chain D, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 205 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 16/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 1 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLRE 56 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ Sbjct: 57 KQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 115 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 175 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 KMEGTFKRKPER---SDLSADINEHLIVELYSK 205 >gi|222103516|gb|ACM44287.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 203 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P + + K S + ++L KQK++ +Y Sbjct: 4 RYRGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+L Sbjct: 61 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A +++ +++ +P +++ N + Sbjct: 120 VNNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLAFNSLENKGLINQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LDHESIGLKINELLVVEYYSR 201 >gi|164686553|ref|ZP_02210581.1| hypothetical protein CLOBAR_00120 [Clostridium bartlettii DSM 16795] gi|164604422|gb|EDQ97887.1| hypothetical protein CLOBAR_00120 [Clostridium bartlettii DSM 16795] Length = 206 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 116/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR G L+ + K + R+Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGASCRQCRREGMKLFLKGDRCYTDKCAIVKRNYAPGQHGQGRK-KLSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR++++ A++ G T NL+ LE RLD +V+R + ARQ Sbjct: 60 KQKVKRIYG-VLETQFRNLYERAEKMSGKTGENLLCLLEERLDNVVFRMGLANSRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H +NG+ V+I S K GDVI VK+ SK A + A + P ++ VN + Sbjct: 119 LVTHAHFTLNGKKVDIPSLTVKVGDVIAVKETSKSSAKFKALVE-ANKVAPNWLDVNLEE 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M A V +P+ + + +L++E YS+ Sbjct: 178 MSAKVVALPTR---EDIDIEIAEHLIIELYSK 206 >gi|325843404|ref|ZP_08167962.1| ribosomal protein S4 [Turicibacter sp. HGF1] gi|325489326|gb|EGC91700.1| ribosomal protein S4 [Turicibacter sp. HGF1] Length = 199 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G ++ K + R Y PG HGQ RK K S +GLQL+ KQK++ Sbjct: 1 MARYTGPSWKISRRLGYSILENGKE-LQKRPYAPGQHGQSRK-KISEYGLQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR + +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 59 AYG-MTERQFRRTYDKAGKLAGKHGENFLYMLESRLDNLVYRLGLAATRRQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K G I +++KS LA V + + A P++++ + M T+V Sbjct: 118 ITVDGKRVDIPSYSVKPGQTISLREKSANLAVVKASLE-ATIHRPDFVTFDEATMTGTYV 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + NL+VEFYSR Sbjct: 177 RLPERSE---VFADIHENLIVEFYSR 199 >gi|294337158|emb|CAQ52729.1| ribosomal protein S4 [Homalia webbiana] gi|294337160|emb|CAQ52730.1| ribosomal protein S4 [Homalia webbiana] Length = 202 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LV+ V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVDDCIVDIPSYRCKPQDFITIKNQRKSETMISKNIEFYQKFKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|167564391|ref|ZP_02357307.1| 30S ribosomal protein S4 [Burkholderia oklahomensis EO147] gi|167571538|ref|ZP_02364412.1| 30S ribosomal protein S4 [Burkholderia oklahomensis C6786] Length = 207 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + +NG N+ S + K GDVI +++K+K+ A ++EA LAE+ + +++V+ Sbjct: 117 QLVSHKAITLNGVVANVPSQQVKAGDVISIREKAKKQARIVEALSLAEQGGLASWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|146297258|ref|YP_001181029.1| ribosomal protein S4 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|172046028|sp|A4XLQ3|RS4_CALS8 RecName: Full=30S ribosomal protein S4 gi|145410834|gb|ABP67838.1| SSU ribosomal protein S4P [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 208 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFAKRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNG++VNI SY GDVIEVK+KSK +E + A+R P+++ + + Sbjct: 119 LVSHAHFKVNGKTVNIPSYLVDVGDVIEVKEKSKSKPRFIEIKEKYAKRPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPIK--EHLIVELYSK 208 >gi|218885212|ref|YP_002434533.1| 30S ribosomal protein S4 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226732177|sp|B8DNK8|RS4_DESVM RecName: Full=30S ribosomal protein S4 gi|218756166|gb|ACL07065.1| ribosomal protein S4 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 208 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDAKCRMCRREGTKLFLKGDRCYTDKCAYDRRPYAPGQHGRARK-KVSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR F +AD ++G T NL++ LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRVYG-VLERQFRGYFHKADMAKGVTGANLLAILERRLDNVIYRLGFANSRQQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR NI S + + GD+IEV + S+++ + EA + +A R P ++ V+ Sbjct: 119 LVRHGIFTLNGRKANIPSMQVRVGDIIEVPEASRKIPVIAEAQEVIARRGCPSWLEVDGP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T +P +D+ +P + +L+VE YS+ Sbjct: 179 SFKGTVKALPQR-EDIQFP--INEHLIVELYSK 208 >gi|294337230|emb|CAQ52764.1| ribosomal protein S4 [Orthostichella rigida] Length = 202 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPHVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNGCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|127511116|ref|YP_001092313.1| 30S ribosomal protein S4 [Shewanella loihica PV-4] gi|152112260|sp|A3Q9A6|RS4_SHELP RecName: Full=30S ribosomal protein S4 gi|126636411|gb|ABO22054.1| SSU ribosomal protein S4P [Shewanella loihica PV-4] Length = 206 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLTRREGTDLFLKSGVRAIDSKCKLE---AAPGQHG-ARKARLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRTYG-VLEKQFRNYYKDAARLKGNTGENLLTLLETRLDNVVYRMGFGATRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNGR VNI S++ DVI V++KS++ A + A ++A +R+ P ++ V+ Sbjct: 116 QLVSHKSIMVNGRVVNIPSFKVSANDVISVREKSQKQARIKAALEVASQREKPTWVEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 AKMEGAFKRLPER---SDLSADINEQLIVELYSK 206 >gi|78064949|ref|YP_367718.1| 30S ribosomal protein S4 [Burkholderia sp. 383] gi|90101679|sp|Q39KE2|RS4_BURS3 RecName: Full=30S ribosomal protein S4 gi|77965694|gb|ABB07074.1| SSU ribosomal protein S4P [Burkholderia sp. 383] Length = 207 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKSITVNGVVANVPSQQVKSGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAE---IAGDINESLIVELYSR 207 >gi|48527375|gb|AAT45820.1| small ribosomal protein 4 [Plagiochila flexuosa] Length = 202 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKLKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMCIARKAKGSTGEVLLQLLEMRSDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDMVNIPSYNCESGDIITIGNKKKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWITLKINELLVVEYYSR 200 >gi|294337275|emb|CAQ52786.1| ribosomal protein S4 [Thamnobryum maderense] Length = 202 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|121997625|ref|YP_001002412.1| ribosomal protein S4 [Halorhodospira halophila SL1] gi|152060952|sp|A1WV98|RS4_HALHL RecName: Full=30S ribosomal protein S4 gi|121589030|gb|ABM61610.1| SSU ribosomal protein S4P [Halorhodospira halophila SL1] Length = 207 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 118/214 (55%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M+K K K+ RR +L+ + K + PG HGQRR + S +GLQLR Sbjct: 1 MAKYIGPKCKLARREKTDLFLKSGVRSIDTKCKLEQ---PPGQHGQRRGGRMSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I E++FR+ +KEA R + T L+ LESRLD + YR F T AR Sbjct: 58 EKQKVRRMYG-IMERQFRNYYKEAARRKAATGTALLQLLESRLDNVCYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q VNHR VLVNGR VNI SY+ + GD + VK+K+K + A +LA+++ ++ V+ Sbjct: 117 QLVNHRGVLVNGRVVNIPSYQVQPGDTVSVKEKAKSQLRIQAALELAQQNGWASWVDVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F + P + +L+VE YS+ Sbjct: 177 TKMEGVFKQAPDRAD---LSQEINESLIVELYSK 207 >gi|222103444|gb|ACM44251.1| small ribosomal protein subunit 4 [Haplocladium microphyllum] Length = 202 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|170695706|ref|ZP_02886848.1| ribosomal protein S4 [Burkholderia graminis C4D1M] gi|170139311|gb|EDT07497.1| ribosomal protein S4 [Burkholderia graminis C4D1M] Length = 207 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 123/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ V+++ K+ A +LEA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGVVSNIPSMQVKAGDVVAVREQKKKQARILEALSLAEQGGMPSWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + +L+VE YSR Sbjct: 177 KKFEGTFKSKPER---SDIAGDINESLIVELYSR 207 >gi|86438896|emb|CAJ55412.1| small ribosomal protein 4 [Plagiochila gigantea] Length = 196 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ + SY K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ Sbjct: 58 G-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHIS 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I ++ K K +++ + ++ +P +++ + + + + Sbjct: 117 INNDIVDIPSYNCEPGDIITIRNKQKSQSAITKNINSFQKLKIPSHLTFDSTQLRGSVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFY 204 + + + + LVVE+Y Sbjct: 177 MINR---EWINLKINELLVVEYY 196 >gi|67035732|gb|AAY62797.1| small ribosomal protein subunit 4 [Quathlamba debilicostata] Length = 196 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+ S Q K S + ++L KQK++ +YG I+ Sbjct: 2 PRVRIIRRLGVLPGLTNKTSQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN Sbjct: 57 ERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SY CK D I +K + K A + + +++ VP +++ + +I Sbjct: 117 IVDIPSYCCKPEDSITIKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|328541100|gb|AEB21774.1| ribosomal protein S4 [Bazzania involuta] Length = 197 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 TERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|82701924|ref|YP_411490.1| 30S ribosomal protein S4 [Nitrosospira multiformis ATCC 25196] gi|90101698|sp|Q2YAX3|RS4_NITMU RecName: Full=30S ribosomal protein S4 gi|82409989|gb|ABB74098.1| SSU ribosomal protein S4P [Nitrosospira multiformis ATCC 25196] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQ + + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRNYAPGQHGQ-KSGRLSDYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR+ ++ A+R RG T NL+ LE RLDT+ YR F + ARQ Sbjct: 60 KQKLRRIYG-VLERQFRNGYELAERQRGVTGENLLQLLECRLDTVSYRMGFGASRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNGR +NI SY+ K GDVIEV +K+K + + + A +R PE++ V+ Sbjct: 119 IVRHNGILVNGRRINIPSYQVKPGDVIEVAEKAKNHLRIKASVEAAEQRHFPEWLEVDTK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF P P + +LV+E YS+ Sbjct: 179 AMKGTFKNKPER---SDLPSSINESLVIELYSK 208 >gi|269792766|ref|YP_003317670.1| 30S ribosomal protein S4 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100401|gb|ACZ19388.1| ribosomal protein S4 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ ++ R G L+ + K + R+ PG HG RK K S +G++LR Sbjct: 1 MSRYTGPVCRLCRAEGTKLFLKGDRCYTEKCAIARRNTRPGQHG-ARKGKTSEYGIRLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++++YG ++E +F +++ A + G T H+ + LE RLD +VYR F + AR+ Sbjct: 60 KQKLRRFYG-LNESQFAKMYEMATKMPGQTGHDFLQLLERRLDNVVYRLGFAVSRRQARE 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H LVNGR +++ S + GDV+ V++KS+ + + + +++A +R VP ++ VN + Sbjct: 119 LVRHGHFLVNGRKLDVPSALLRAGDVVTVREKSRDVEVLKQNAEVASQRSVPGWLEVNPE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M V +P+ + V + LVVEFY+R Sbjct: 179 TMSGRVVSLPTRDQ---IEVPVNEQLVVEFYAR 208 >gi|33152930|ref|NP_874283.1| 30S ribosomal protein S4 [Haemophilus ducreyi 35000HP] gi|41017830|sp|Q7VKF7|RS4_HAEDU RecName: Full=30S ribosomal protein S4 gi|33149155|gb|AAP96672.1| 30S ribosomal protein S4 [Haemophilus ducreyi 35000HP] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ + N PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKVRRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI SY+ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 119 LVSHKSIVVNGRVVNIPSYQVSVDDVVTVREKSKKQARIKASLELASQREKPTWLEVDAV 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 179 KMEGVFKRTPER---SDLSADINEHLIVELYSK 208 >gi|48527365|gb|AAT45815.1| small ribosomal protein 4 [Plagiochila deflexirama] Length = 202 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQILLQLLEMRSDNTIFRLSMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ILINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|78103255|ref|YP_358580.1| ribosomal protein S4 [Phalaenopsis aphrodite subsp. formosana] gi|90101665|sp|Q3BAN8|RR4_PHAAO RecName: Full=30S ribosomal protein S4, chloroplastic gi|58802785|gb|AAW82505.1| ribosomal protein S4 [Phalaenopsis aphrodite subsp. formosana] Length = 201 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRPRSR----SDLQTQLRFGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPLDIITTKDKERSKALIQNYLVSSPRGELPNHLTIDSLQYKGFV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|322384358|ref|ZP_08058056.1| 30S ribosomal protein S4-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150860|gb|EFX44297.1| 30S ribosomal protein S4-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 199 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G+QL KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGPTQRRKVSGYGMQLMEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F +++ +A + G + N + LESRLD +V+R F + ARQ V+H H Sbjct: 59 MYG-LNEKQFHNLYNKAIKLPGISGENFMILLESRLDNLVFRLGFANSRAGARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY+ GDVI ++++S+ L S+ EA + +P Y+ N + F+ Sbjct: 118 VTVNGKKVDIASYQVSVGDVIGLRERSRNLKSIKEALE-NRNFLPAYLEFNEQALEGKFI 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 177 RLPERSE---LAQEIDEKQIVEFYSR 199 >gi|317485797|ref|ZP_07944661.1| ribosomal protein S4 [Bilophila wadsworthia 3_1_6] gi|316922903|gb|EFV44125.1| ribosomal protein S4 [Bilophila wadsworthia 3_1_6] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDAKCRLCRREGTKLLLKGDRCFTDKCAFDRRPYAPGQHGRARK-KLSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+F F AD ++G T NL++FLE RLD +VYR F + ARQ Sbjct: 60 KQKVRRVYG-VLEKQFHGYFVHADMAKGVTGANLLAFLERRLDNVVYRLGFANSRTQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NG V I S + K GD +EV +KS+ + + EA + +A R P ++ V+ Sbjct: 119 LVRHGVFTLNGHKVTIPSLQVKVGDSVEVPEKSRTIPVLAEAQEAVARRGCPSWLEVDAP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P D+ +P + +L+VE YS+ Sbjct: 179 NFKGIVKALPQR-DDIQFP--INEHLIVELYSK 208 >gi|239905883|ref|YP_002952622.1| 30S ribosomal protein S4 [Desulfovibrio magneticus RS-1] gi|259495275|sp|C4XLK2|RS4_DESMR RecName: Full=30S ribosomal protein S4 gi|239795747|dbj|BAH74736.1| 30S ribosomal protein S4 [Desulfovibrio magneticus RS-1] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K +I RR G L+ + K R Y PG HG+ RK K S + +QLR Sbjct: 1 MARYTEAKCRICRREGAKLFLKGDRCYTDKCAHERRPYAPGQHGRIRK-KMSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK +K YG I E++FR FK AD +G T NL+S LE RLD +YR F + ARQ Sbjct: 60 KQKTRKMYG-ILEEQFRDYFKRADMQKGVTGENLLSALERRLDNTIYRLGFATSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VNI S + K GDVIEV+++++Q +LEA Q +A R P ++ V + Sbjct: 119 LVRHGLFTLNGRRVNIPSLQVKVGDVIEVRERNRQSPIILEAQQVIARRGTPAWLEVEGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + +P+ +DV +P + L+VE YS+ Sbjct: 179 KLKGKVIALPTR-EDVQFP--INEQLIVELYSK 208 >gi|319764615|ref|YP_004128552.1| ribosomal protein s4 [Alicycliphilus denitrificans BC] gi|330826872|ref|YP_004390175.1| 30S ribosomal protein S4 [Alicycliphilus denitrificans K601] gi|317119176|gb|ADV01665.1| ribosomal protein S4 [Alicycliphilus denitrificans BC] gi|329312244|gb|AEB86659.1| ribosomal protein S4 [Alicycliphilus denitrificans K601] Length = 224 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 134/213 (62%), Gaps = 15/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S +GLQLR Sbjct: 19 ARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSK---PGQHGRTSGARTSDYGLQLRE 75 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F+ A+R +G+T NL++ LESRLD +VYR F T ARQ Sbjct: 76 KQKVKRMYG-VLEKQFRRYFEAAERRKGNTGANLLALLESRLDNVVYRMGFGSTRAEARQ 134 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V+H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA++ +P ++ VN D Sbjct: 135 LVSHKAITVNGQSVNIASYLVKTGDVVAVREKSKKQARIVEALQLAQQVGMPAWVEVNAD 194 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF ++P + + + +L+VE YSR Sbjct: 195 KVEGTFKQVPDRDQ---FGADINESLIVELYSR 224 >gi|295677907|ref|YP_003606431.1| ribosomal protein S4 [Burkholderia sp. CCGE1002] gi|295437750|gb|ADG16920.1| ribosomal protein S4 [Burkholderia sp. CCGE1002] Length = 207 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V H+ + VNG NI S + K GDV+ V+++ ++ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVGHKAITVNGVVTNIPSMQVKAGDVVAVREQKRKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER---SDIAGDINESLIVELYSR 207 >gi|222103448|gb|ACM44253.1| small ribosomal protein subunit 4 [Brachythecium salebrosum] Length = 202 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 116 HILVNDCIVDIPSYRCKPQDFITIKNQRKSETVINKNIEFYQKYKIPNHLTYSFLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|78221872|ref|YP_383619.1| 30S ribosomal protein S4 [Geobacter metallireducens GS-15] gi|90101690|sp|Q39XY0|RS4_GEOMG RecName: Full=30S ribosomal protein S4 gi|78193127|gb|ABB30894.1| SSU ribosomal protein S4P [Geobacter metallireducens GS-15] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRRENMELFLKGERCYTDKCAIKRRNYPPGQHGQGR-PKVSNYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FRS F+EADR RG T NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVRRIYG-VLEKQFRSYFEEADRMRGVTGENLLSLLERRLDNVVYRLGFASSRTEARI 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NGR NI S + K GDV+ +K+KS+++A + E+ + R P+++ ++ + Sbjct: 119 LVRHNHFTLNGRKANIPSIQLKAGDVVVLKEKSRKIACINESLDAVVRRGTPQWLELDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +D+ P +Q L+VE YS+ Sbjct: 179 GYKGVVKLLPAR-EDIAMP--IQEQLIVELYSK 208 >gi|224023644|ref|ZP_03642010.1| hypothetical protein BACCOPRO_00351 [Bacteroides coprophilus DSM 18228] gi|224016866|gb|EEF74878.1| hypothetical protein BACCOPRO_00351 [Bacteroides coprophilus DSM 18228] Length = 201 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNNRRKKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A + G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASANGITGEILLQSLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G ++ V+++SK L + A ++ + ++ + Sbjct: 119 ITVDGKVVNIPSYSVKPGQLVGVRERSKSLEVIGSALAGFNHSKYPWLEWDENSKTGKML 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|242278683|ref|YP_002990812.1| ribosomal protein S4 [Desulfovibrio salexigens DSM 2638] gi|259495273|sp|C6C1B0|RS4_DESAD RecName: Full=30S ribosomal protein S4 gi|242121577|gb|ACS79273.1| ribosomal protein S4 [Desulfovibrio salexigens DSM 2638] Length = 208 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K ++ RR GE L+ + K R Y PG+ G+ RK K S + +QLR Sbjct: 1 MARYTKAKCRLCRREGEKLFIKGDRCFTDKCSYERRPYAPGIAGRMRK-KMSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FRS FK AD +G T NL+ LE+RLD VYR F + ARQ Sbjct: 60 KQKVRRMYG-VLEGQFRSYFKRADGMKGVTGANLLMLLETRLDNTVYRLGFANSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H NGR VN+ S K GDVIEV+++S+++ + EA + +A R PE++ + Sbjct: 119 LVKHGIFTKNGRRVNVPSMHVKPGDVIEVREESRKIPVIAEAQEVIARRGCPEWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P+ +D+ +P + L+VE YS+ Sbjct: 179 NFKGEVKAMPTR-EDIQFP--INEQLIVELYSK 208 >gi|77862553|gb|ABB04549.1| small ribosomal protein 4 [Riccia fluitans] Length = 201 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTFKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHQHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N +V+I SY CK D+I +K + K + + + ++ +P +++ + Sbjct: 117 LINNNTVDIPSYNCKPKDIITIKDRQKSQSIITKNLTFFQKQKIPNHLTFDLIQFKGLIN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIVDR---ECIYLKINELLVVEYYSR 199 >gi|77862559|gb|ABB04552.1| small ribosomal protein 4 [Sauteria alpina] Length = 201 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKFGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK DVI +K++S + + + ++ +P +++ + + Sbjct: 117 LINNNMVDIPSYNCKPKDVITIKERSNSQSIITKNLNSFQKQKIPNHLTFDLMQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|318040406|ref|ZP_07972362.1| 30S ribosomal protein S4 [Synechococcus sp. CB0101] Length = 202 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKSA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY+CK GDV+ ++++ + + ++P ++ ++ + + A Sbjct: 117 VTVNGRVVDIPSYQCKAGDVVAIRERKQSKKLAEGNLEFPGLANIPPHLELDKNKLTAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S + + + LVVEFYSR Sbjct: 177 ---ISKCEREWVALEINELLVVEFYSR 200 >gi|322391286|ref|ZP_08064757.1| 30S ribosomal protein S4 [Streptococcus peroris ATCC 700780] gi|321145890|gb|EFX41280.1| 30S ribosomal protein S4 [Streptococcus peroris ATCC 700780] Length = 203 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F EA + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVEATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + D + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 178 TRLPERDE---INPEINEALIVEFYNK 201 >gi|299065440|emb|CBJ36609.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum CMR15] Length = 207 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKSGDVVTIREKSKKQVRIAESLSLAEQTGFPGWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDRAD---IAGDINESLIVELYSR 207 >gi|182418834|ref|ZP_02950099.1| ribosomal protein S4 [Clostridium butyricum 5521] gi|237666637|ref|ZP_04526622.1| ribosomal protein S4 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377331|gb|EDT74892.1| ribosomal protein S4 [Clostridium butyricum 5521] gi|237657836|gb|EEP55391.1| ribosomal protein S4 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 206 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCFTDKCAFVRRSYAPGQHG-ANKKKISGYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ +++A+ +G + NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLESQFRAYYEKAEHMKGISGENLLKLLEMRLDNVVYRLGYGASRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY DVI V +KS+ ++ + +P ++ N DN Sbjct: 119 LVTHGHFLVNGKKVDICSYSVSANDVITVCEKSRASEKFKTFAENP-KTLPAWLEANVDN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +PS + V + L+VE YS+ Sbjct: 178 FEGKVVAVPSREE---IDVPVNETLIVELYSK 206 >gi|77862515|gb|ABB04530.1| small ribosomal protein 4 [Athalamia pinguis] Length = 201 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKFGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD IV+R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK DVI +K + K + + + ++ +P +++ + + Sbjct: 117 LINNNIVDIPSYNCKPKDVISIKDRPKSQSIITKNLNSFQKQKIPNHLTFDLMQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|322412877|gb|EFY03785.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323128282|gb|ADX25579.1| 30S ribosomal protein S4 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 203 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEAGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|223042027|ref|ZP_03612208.1| 30S ribosomal protein S4 [Actinobacillus minor 202] gi|240948151|ref|ZP_04752554.1| 30S ribosomal protein S4 [Actinobacillus minor NM305] gi|198246529|gb|ACH82221.1| 30S ribosomal protein S4 [Actinobacillus minor 202] gi|240297504|gb|EER48011.1| 30S ribosomal protein S4 [Actinobacillus minor NM305] Length = 208 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ + N PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++FR+ +KEA+R +G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKVRRIYG-ILERQFRNYYKEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 119 LVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDAT 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 179 KMEGVFKRTPER---SDLSADINEHLIVELYSK 208 >gi|294337188|emb|CAQ52744.1| ribosomal protein S4 [Lembophyllum clandestinum] Length = 202 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|46811014|gb|AAT01825.1| small ribosomal protein 4 [Herbertus alpinus] Length = 197 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGTLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + Sbjct: 117 DIVDIPSYNCEPGDIITIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGFINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|90020630|ref|YP_526457.1| 30S ribosomal protein S4P [Saccharophagus degradans 2-40] gi|123277582|sp|Q21M34|RS4_SACD2 RecName: Full=30S ribosomal protein S4 gi|89950230|gb|ABD80245.1| SSU ribosomal protein S4P [Saccharophagus degradans 2-40] Length = 206 Score = 256 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + P+ ++ PG HGQRR + S +G+QLR KQ Sbjct: 1 MARYIGPTCKLSRREGTDLFLKSGVRPLESKCKAEAAPGQHGQRR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A R +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKDAARIKGATGENLLKLLEGRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG++VNI S++ GDVI V++KSK + + +A +R E++ VN + Sbjct: 119 SHKAILVNGKTVNIPSFQVNVGDVISVREKSKNQLRIQNSLGIAGQRADVEWVDVNTEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P P + NL+VE YS+ Sbjct: 179 EGVFKRCPDRAD---LPAEINENLIVELYSK 206 >gi|189460709|ref|ZP_03009494.1| hypothetical protein BACCOP_01356 [Bacteroides coprocola DSM 17136] gi|189432668|gb|EDV01653.1| hypothetical protein BACCOP_01356 [Bacteroides coprocola DSM 17136] Length = 201 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNTRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNMFEKAASMNGITGEILLQSLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI SY K G ++ V++KSK L V + ++ + ++ + Sbjct: 119 ITVDGQVVNIPSYSVKPGQLVGVREKSKSLEVVANSLAGFNHSKYPWLEWDENSKTGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ +L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEHLIVELYSK 201 >gi|189347677|ref|YP_001944206.1| 30S ribosomal protein S4 [Chlorobium limicola DSM 245] gi|226697820|sp|B3EGW4|RS4_CHLL2 RecName: Full=30S ribosomal protein S4 gi|189341824|gb|ACD91227.1| ribosomal protein S4 [Chlorobium limicola DSM 245] Length = 203 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALSPKAEKYLERRPFAPGQHGQSRKGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE RLD +V+R+ F + ARQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNVVFRSGFSASRAGARQLVSHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 ++VNG+ VNI S++ GD+IE +Q+S+ + +V ++ A E P +I V+ N A F Sbjct: 120 LVVNGKKVNIPSFQVSPGDLIEFRQRSRNMGAVTDSLSKAPESRFPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P +D+ P LVVE YS+ Sbjct: 180 LSVPER-EDIQEPF--NEQLVVELYSK 203 >gi|86438900|emb|CAJ55425.1| small ribosomal protein 4 [Plagiochila korthalsiana] Length = 198 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTGKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 IAINNDIVNIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 ++ + + + LVVE+Y Sbjct: 177 SQMINR---EWINLKINELLVVEYY 198 >gi|26399166|sp|Q9FS90|RR4_SPLSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|10798708|emb|CAC12833.1| small ribosomal protein 4 [Splachnum sphaericum] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P +S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTP-QLKSSPINQ--STSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A ++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P ++ N Sbjct: 117 ILVNEHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKYKIPNHLIYNSLKKQGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337252|emb|CAQ52775.1| ribosomal protein S4 [Pseudoleskeopsis zippelii] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKAPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRC D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCXPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|325299106|ref|YP_004259023.1| ribosomal protein S4 [Bacteroides salanitronis DSM 18170] gi|324318659|gb|ADY36550.1| ribosomal protein S4 [Bacteroides salanitronis DSM 18170] Length = 201 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNTRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G T L+ LE RLD IV+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASMNGITGEILLQSLECRLDNIVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G +I V++KSK L ++ + ++ + ++ + + Sbjct: 119 ITVDGKVVNIPSFAVKPGQLIGVREKSKSLEAIANSLAGFNHSKYPWLEWDENSKMGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +++VE YS+ Sbjct: 179 HVPERAD---IPENIKEHMIVELYSK 201 >gi|48527381|gb|AAT45823.1| small ribosomal protein 4 [Plagiochila heterophylla] Length = 200 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLES--NYI---DRSTSNKKVSQYRIRLEEKQKLRF 55 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 56 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 114 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P ++ + + + Sbjct: 115 ISINNDIVDIPSYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLIFDSTQLRGSV 174 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 175 NQMINR---EWINLKINELLVVEYYSR 198 >gi|140083429|gb|ABO84826.1| ribosomal protein S4 [Philonotis fontana] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 117 ILVNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVV +YSR Sbjct: 177 NQI---LDRESIGLKINELLVVVYYSR 200 >gi|145588266|ref|YP_001154863.1| ribosomal protein S4 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189045391|sp|A4SUY5|RS4_POLSQ RecName: Full=30S ribosomal protein S4 gi|145046672|gb|ABP33299.1| SSU ribosomal protein S4P [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 207 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 122/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T+ PG HG+ S+ S +G QLR Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCKLDTK---PGQHGRTSGSRTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA+R +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H +L+NG VNI S + K GDV+ +++K+K+ A + E+ L + ++SV+ Sbjct: 117 QLVSHCAILLNGSPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF ++P + +L+VE YSR Sbjct: 177 AKLEGTFKQVPDR---EDISGEINESLIVELYSR 207 >gi|261250393|ref|ZP_05942968.1| SSU ribosomal protein S4p (S9e) [Vibrio orientalis CIP 102891] gi|260938962|gb|EEX94949.1| SSU ribosomal protein S4p (S9e) [Vibrio orientalis CIP 102891] Length = 206 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VNI S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNIPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATF R+P + L+VE YS+ Sbjct: 179 EATFKRMPER---SDLSADINEQLIVELYSK 206 >gi|77019151|emb|CAH60181.1| chloroplast 30S ribosomal protein S4 [Dryptodon austrofunalis] Length = 199 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKYKIPNHLTFNSLENKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|328541104|gb|AEB21776.1| ribosomal protein S4 [Chloranthelia denticulata] Length = 199 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV + Sbjct: 58 -LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIELCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|41323105|gb|AAR99782.1| small ribosomal protein 4 [Plagiochila disticha] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRIKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +L+N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ILINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LV E+YSR Sbjct: 177 NQMINR---EWINLKINELLVAEYYSR 200 >gi|150015071|ref|YP_001307325.1| 30S ribosomal protein S4 [Clostridium beijerinckii NCIMB 8052] gi|189045374|sp|A6LPT9|RS4_CLOB8 RecName: Full=30S ribosomal protein S4 gi|149901536|gb|ABR32369.1| ribosomal protein S4 [Clostridium beijerinckii NCIMB 8052] Length = 206 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K RSY PG HG K K S +G+QLR Sbjct: 1 MARYTGATCRLCRREGMKLFLKGDRCFTDKCAFVRRSYAPGQHG-ANKKKVSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ +++A+ +G T NL+ LE RLD IVYR + + ARQ Sbjct: 60 KQKARRIYG-ILEGQFRTYYEKAEHIKGITGENLLKLLEMRLDNIVYRLGYGSSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ V+I SY DVI V +KS+ + + +P+++ N DN Sbjct: 119 LVTHGHFLVNGKKVDICSYHVSVNDVITVCEKSRSSEKFKTFVENP-KTLPKWLEANVDN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V PS +D+ PV L+VE YS+ Sbjct: 178 YEGKVVAEPSR-EDIDVPV--NETLIVELYSK 206 >gi|149195169|ref|ZP_01872260.1| 30S ribosomal protein S4 [Caminibacter mediatlanticus TB-2] gi|149134721|gb|EDM23206.1| 30S ribosomal protein S4 [Caminibacter mediatlanticus TB-2] Length = 208 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 93/213 (43%), Positives = 128/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +I+RR+G +L + KS ++ R Y PG HGQRR +K S +G QLR Sbjct: 1 MARYTGPVERIERRLGVSLELKGERRLAGKSALDRRPYAPGQHGQRR-AKISEYGQQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG + EK+FR FKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKIKYYYG-VLEKQFRRFFKEANRQEGNTGENLIKLLERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ VNI SY KEGD IE+++KSK + A +L A+ + ++ V+ + Sbjct: 119 LVTHGHILVNGKRVNIPSYIVKEGDRIEIREKSKNNPQIQRALELTAQTGIAPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 MV F R+P + + + LVVE YS+ Sbjct: 179 KMVGVFQRVPEREE---VNIPVDERLVVELYSK 208 >gi|156310431|ref|XP_001617741.1| hypothetical protein NEMVEDRAFT_v1g156832 [Nematostella vectensis] gi|156195585|gb|EDO25641.1| predicted protein [Nematostella vectensis] Length = 207 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 129/213 (60%), Gaps = 15/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + KS +T+ PG HG+ + S FGLQLR Sbjct: 2 ARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTK---PGQHGRTSGQRTSDFGLQLRE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F+ AD+ +G+T NL+S LESRLD +VYR F T ARQ Sbjct: 59 KQKVKRMYG-VLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ + VNG+SVNI SY K GDV+ V++KSK+ A ++EA QLA + P ++ V+ D Sbjct: 118 LVSHKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSAD 177 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + + + +L+VE YSR Sbjct: 178 KAEGTFKKSPDRDE---FGADINESLIVELYSR 207 >gi|48527421|gb|AAT45843.1| small ribosomal protein 4 [Plagiochila subtropica] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIIIIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---ELIDLKINELLVVEYYSR 200 >gi|157689482|gb|ABV65297.1| ribosomal protein S4 [Gunnera manicata] Length = 201 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSVKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITARDEEKSRALIQNFLDSSTHAELPKHLTRHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVSLKINELLVVEYYSR 199 >gi|21230387|ref|NP_636304.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21241760|ref|NP_641342.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citri str. 306] gi|66769619|ref|YP_244381.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. 8004] gi|78046578|ref|YP_362753.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|188992831|ref|YP_001904841.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. B100] gi|294627861|ref|ZP_06706440.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664166|ref|ZP_06729552.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325916510|ref|ZP_08178779.1| SSU ribosomal protein S4P [Xanthomonas vesicatoria ATCC 35937] gi|325921504|ref|ZP_08183359.1| SSU ribosomal protein S4P [Xanthomonas gardneri ATCC 19865] gi|325925364|ref|ZP_08186766.1| SSU ribosomal protein S4P [Xanthomonas perforans 91-118] gi|59800213|sp|P0A0X9|RS4_XANCP RecName: Full=30S ribosomal protein S4 gi|59800214|sp|P0A0Y0|RS4_XANAC RecName: Full=30S ribosomal protein S4 gi|81304426|sp|Q4URG2|RS4_XANC8 RecName: Full=30S ribosomal protein S4 gi|90101736|sp|Q3BWW0|RS4_XANC5 RecName: Full=30S ribosomal protein S4 gi|226695102|sp|B0RU59|RS4_XANCB RecName: Full=30S ribosomal protein S4 gi|4098576|gb|AAD00324.1| ribosomal protein S4 [Xanthomonas campestris pv. campestris] gi|21107132|gb|AAM35878.1| 30S ribosomal protein S4 [Xanthomonas axonopodis pv. citri str. 306] gi|21111944|gb|AAM40228.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574951|gb|AAY50361.1| 30S ribosomal protein s4 [Xanthomonas campestris pv. campestris str. 8004] gi|78035008|emb|CAJ22653.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|167734591|emb|CAP52801.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. campestris] gi|292597775|gb|EFF41933.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292606069|gb|EFF49334.1| 30S ribosomal protein S4 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325537299|gb|EGD09026.1| SSU ribosomal protein S4P [Xanthomonas vesicatoria ATCC 35937] gi|325544242|gb|EGD15623.1| SSU ribosomal protein S4P [Xanthomonas perforans 91-118] gi|325548051|gb|EGD19050.1| SSU ribosomal protein S4P [Xanthomonas gardneri ATCC 19865] Length = 208 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + + PG HG RK K S + QLR Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQK---PGQHGAARKGKLSDYATQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K+A +G+T NL+ LE+RLD + YR F T AAR Sbjct: 58 EKQKVKRIYG-LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVCYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVN 171 Q V+HR VLVNG+SVN+ SY+ K GD I + +K+++ V EA +AE+ P ++ V+ Sbjct: 117 QLVSHRGVLVNGKSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P P + L+VE YS+ Sbjct: 177 SKKFSGVFKAVPDRAD---LPSDINEALIVELYSK 208 >gi|294337164|emb|CAQ52732.1| ribosomal protein S4 [Homaliodendron exiguum] gi|294337166|emb|CAQ52733.1| ribosomal protein S4 [Homaliodendron microdendron] gi|294337220|emb|CAQ52759.1| ribosomal protein S4 [Neckeropsis calcicola] gi|294337222|emb|CAQ52760.1| ribosomal protein S4 [Neckeropsis calcutensis] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|26399092|sp|P59135|RR4_BRYCA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504373|emb|CAC80631.1| small ribosomal protein 4 [Rosulabryum capillare] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGVLPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R VNI SYRCK D I +K + K A + + L ++ P +++ N Sbjct: 117 ILVNDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 TQI---LDRESIGLKINELLVVEYYSR 200 >gi|303256474|ref|ZP_07342488.1| ribosomal protein S4 [Burkholderiales bacterium 1_1_47] gi|331000668|ref|ZP_08324321.1| ribosomal protein S4 [Parasutterella excrementihominis YIT 11859] gi|302859965|gb|EFL83042.1| ribosomal protein S4 [Burkholderiales bacterium 1_1_47] gi|329570880|gb|EGG52591.1| ribosomal protein S4 [Parasutterella excrementihominis YIT 11859] Length = 207 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 9/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK----SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + PG HG+ ++ S +G QLR KQ Sbjct: 1 MARYTGPKEKLARREGCDLNLKSAVRSFDSKCKSESAPGQHGRTSGARLSDYGAQLREKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + E++FR F +A R RG+T L+S LESRLD +VYR F T ARQ V Sbjct: 61 KVKRMYG-VLERQFRLYFAKAARKRGNTGEQLLSLLESRLDNVVYRMGFGCTRAEARQLV 119 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H + VNG VNI SY K GDVI V++K+K + E+ +LAE +P+++SV+ + Sbjct: 120 SHCAISVNGNKVNIPSYSVKAGDVIAVREKAKNQVRIAESLKLAESNGLPDWVSVDTKKL 179 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P+ + P + +L+VE YSR Sbjct: 180 EGTFKNVPARDEICP---DVNESLIVELYSR 207 >gi|262377288|ref|ZP_06070512.1| ribosomal protein S4 [Acinetobacter lwoffii SH145] gi|262307741|gb|EEY88880.1| ribosomal protein S4 [Acinetobacter lwoffii SH145] Length = 208 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 120/212 (56%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG----PGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + P + ++ PG HG R K S + LQLR K Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKHAKVPGQHGGARGGKQSEYSLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++F + +KEA R +G T NL+ LESRLD +VYR F T ARQ Sbjct: 61 QKVRRMYG-VLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDN 174 V+HR + +NGR VNI S + K GDVI V + +KQ + A +LA +R +P ++ ++H Sbjct: 120 VSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELATQRGMPSWMEIDHSK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P P + +L+VE YS+ Sbjct: 180 LEGTFKAAPDR---SDLPAEINESLIVELYSK 208 >gi|193214825|ref|YP_001996024.1| 30S ribosomal protein S4 [Chloroherpeton thalassium ATCC 35110] gi|226697824|sp|B3QYE9|RS4_CHLT3 RecName: Full=30S ribosomal protein S4 gi|193088302|gb|ACF13577.1| ribosomal protein S4 [Chloroherpeton thalassium ATCC 35110] Length = 203 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R+Y PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALAPKAEKYLGRRAYAPGQHGQSRKGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V+H H Sbjct: 61 IYG-VLERQFRNYYKKAVSQRGVTGENLVKLLECRFDNVVFRAGFSPSRAGARQLVSHCH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 + +NG VNI SY+ K GDVI+ ++KS+ + +V + + +P++I V+ NM A F Sbjct: 120 LRINGNKVNIPSYQVKPGDVIDFREKSRNMDAVRNSLNKTPDSRIPQWIQVDKANMKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P LVVE YS+ Sbjct: 180 LNVPERAD---IQEPYNEQLVVELYSK 203 >gi|48527419|gb|AAT45842.1| small ribosomal protein 4 [Plagiochila spinulosa] Length = 202 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIVRRLGSLPGLTSKTLKSKSSYI---DRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIRNKQKSQSIITKNIHSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + ++ L VE+YSR Sbjct: 177 NQMINR---EWITLKIKELLDVEYYSR 200 >gi|328541162|gb|AEB21805.1| ribosomal protein S4 [Lepidozia trichodes] Length = 200 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDIITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSTKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|319778700|ref|YP_004129613.1| SSU ribosomal protein S4p (S9e) [Taylorella equigenitalis MCE9] gi|317108724|gb|ADU91470.1| SSU ribosomal protein S4p (S9e) [Taylorella equigenitalis MCE9] Length = 207 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKCKLSRREGIDLFLKSARRPLDSKCKFESK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H + +NG+ +I S GDV+ V++KSK + ++ +LAE PE++SV Sbjct: 117 QLVSHGAIELNGKKADIPSMIVNAGDVVSVREKSKGQIRIKDSLELAESLSFPEWVSVEP 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KEFKGTFKQVPDRAD---VARDINESLIVELYSR 207 >gi|294337118|emb|CAQ52709.1| ribosomal protein S4 [Giraldiella levieri] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A + +G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|167752411|ref|ZP_02424538.1| hypothetical protein ALIPUT_00655 [Alistipes putredinis DSM 17216] gi|167660652|gb|EDS04782.1| hypothetical protein ALIPUT_00655 [Alistipes putredinis DSM 17216] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M + K KI R+ GE ++G + + R++ PG HG R++ K S +G QL KQK K Sbjct: 1 MGRYIGPKSKIARKFGEAIFGADRV-LEKRNFPPGQHGLARKRKKVSEYGQQLSEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F +++A R G T NL+ LE RLD +VYR PT AARQ V+H Sbjct: 60 ATYG-LLEKQFSRTYEQAARMGGITGENLLKLLECRLDNVVYRLGIAPTRAAARQLVSHC 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GD++ V++KSK L ++ + + ++ + M F Sbjct: 119 HICVNGNVVNIPSYSLKVGDIVSVREKSKSLEVIVGSLAGGSKSRYAWLEWDGAAMAGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P + P ++ L+VE YS+ Sbjct: 179 LQRPEREE---IPENIKEQLIVELYSK 202 >gi|148543735|ref|YP_001271105.1| 30S ribosomal protein S4 [Lactobacillus reuteri DSM 20016] gi|194468296|ref|ZP_03074282.1| ribosomal protein S4 [Lactobacillus reuteri 100-23] gi|227363285|ref|ZP_03847417.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM2-3] gi|227544238|ref|ZP_03974287.1| 30S ribosomal protein S4 [Lactobacillus reuteri CF48-3A] gi|300908234|ref|ZP_07125700.1| 30S ribosomal protein S4 [Lactobacillus reuteri SD2112] gi|325682107|ref|ZP_08161625.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM4-1A] gi|172048234|sp|A5VIU4|RS4_LACRD RecName: Full=30S ribosomal protein S4 gi|148530769|gb|ABQ82768.1| SSU ribosomal protein S4P [Lactobacillus reuteri DSM 20016] gi|194453149|gb|EDX42047.1| ribosomal protein S4 [Lactobacillus reuteri 100-23] gi|227071741|gb|EEI10032.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM2-3] gi|227185791|gb|EEI65862.1| 30S ribosomal protein S4 [Lactobacillus reuteri CF48-3A] gi|300894661|gb|EFK88017.1| 30S ribosomal protein S4 [Lactobacillus reuteri SD2112] gi|324978751|gb|EGC15700.1| 30S ribosomal protein S4 [Lactobacillus reuteri MM4-1A] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R+Y PG HG+ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRVSRRLGVSLSGTGKE-LARRAYAPGDHGRDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G +I V+ KSK L + A + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQIIAVRDKSKNLDIIKNAVE-AVVSRPSYVDFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ + L+VEFY++ Sbjct: 178 NRIPAR---EDMNADIDEALIVEFYNK 201 >gi|90994410|ref|YP_536900.1| ribosomal protein S4 [Porphyra yezoensis] gi|122194732|sp|Q1XDR8|RR4_PORYE RecName: Full=30S ribosomal protein S4, chloroplastic gi|90818974|dbj|BAE92343.1| 30S ribosomal protein S4 [Porphyra yezoensis] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G +L G + + RSY PG HGQ + KPS + ++L KQK++ Sbjct: 1 MSRYRGPRVRISRRLG-DLPGLSRKAI-KRSYPPGEHGQ-KSRKPSEYAVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+ K A + +G T L+ LE RLD V+R PTI AARQ VNH H Sbjct: 58 NYG-LSEKQLFKYVKAAKKLQGSTGQILLQLLEMRLDNTVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +NG+ V+I SY+CK G+ I VK + V ++P ++ +N N+ Sbjct: 117 ICINGQVVSICSYQCKPGESISVKNQEASRKLVENYLAFPGLANIPSHLELNKSNLSGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LV+E+YSR Sbjct: 177 NGVIDR---EWVALQLNELLVIEYYSR 200 >gi|294337168|emb|CAQ52734.1| ribosomal protein S4 [Homaliodendron piniforme] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPHVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + ++ ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNTEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337228|emb|CAQ52763.1| ribosomal protein S4 [Pendulothecium punctatum] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLR----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 116 HILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|198273978|ref|ZP_03206510.1| hypothetical protein BACPLE_00114 [Bacteroides plebeius DSM 17135] gi|198273056|gb|EDY97325.1| hypothetical protein BACPLE_00114 [Bacteroides plebeius DSM 17135] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKTRIARKFGEAIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLEKQFRNMFEKAAGMNGITGEILLQSLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G ++ V++KSK L + + ++ + ++ + + Sbjct: 119 ITVDGKVVNIPSFSVKPGQLVGVREKSKSLEVIANSLAGFNHSKYPWLEWDENSKIGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P P ++ +L+VE YS+ Sbjct: 179 HVPERAD---IPENIKEHLIVELYSK 201 >gi|251797775|ref|YP_003012506.1| ribosomal protein S4 [Paenibacillus sp. JDR-2] gi|247545401|gb|ACT02420.1| ribosomal protein S4 [Paenibacillus sp. JDR-2] Length = 199 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K K+ RR+G +L G K R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MSRYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGPNQRKKLSGYGVQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR++F +A + +G + N + LESRLD +V+R F + ARQ V+H H Sbjct: 59 MYG-LNEKQFRNLFDKAAKLKGISGENFMVLLESRLDNLVFRLGFANSRAGARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY GDVI ++++S+ L S+ EA + +P YI N + +V Sbjct: 118 VTVNGKKVDIASYTVSTGDVIGLRERSRGLKSIKEAIE-GRHHLPNYIEFNDAAVEGKYV 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFYSR Sbjct: 177 RLPERAE---LSQEIDEKQIVEFYSR 199 >gi|187925591|ref|YP_001897233.1| 30S ribosomal protein S4 [Burkholderia phytofirmans PsJN] gi|226697818|sp|B2T726|RS4_BURPP RecName: Full=30S ribosomal protein S4 gi|187716785|gb|ACD18009.1| ribosomal protein S4 [Burkholderia phytofirmans PsJN] Length = 207 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG NI S + K GDV+ V++ K+ A +LEA LAE+ +P +++V+ Sbjct: 117 QLVSHKAIVVNGVVSNIPSMQVKAGDVVAVRETKKKQARILEALSLAEQGGMPSWVAVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER---SDIAGDINESLIVELYSR 207 >gi|48527373|gb|AAT45819.1| small ribosomal protein 4 [Plagiochila exigua] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI R +G +L G + ++S L K S + ++L KQK++ Sbjct: 1 MSRYRGPRXKIXRCLG-SLPGLTSKTLKSKSGS--LDRSTLNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 PYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I +K K K + V + ++ +P +++ + + + Sbjct: 117 ISLNNDIVDIPSYNCEPGDIITIKNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINEWLVVEYYSR 200 >gi|67035576|gb|AAY62719.1| small ribosomal protein subunit 4 [Eucamptodon perichaetialis] Length = 199 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNILFRLGMAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R +NI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NDRIINIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKIPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|67035706|gb|AAY62784.1| small ribosomal protein subunit 4 [Bucklandiella crispipila] Length = 199 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKYKIPNHLTFNSLENKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|300172651|ref|YP_003771816.1| 30S ribosomal protein S4 [Leuconostoc gasicomitatum LMG 18811] gi|299887029|emb|CBL90997.1| 30S ribosomal protein S4 [Leuconostoc gasicomitatum LMG 18811] Length = 203 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F S+F +A + +G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFHSLFNKAGKIRKGTHGTNFMILLEQRLDSLVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H++V+ + V+I S+ G VI V+ KSK + + A + + P+++S + + + + Sbjct: 119 HIMVDSKRVDIPSFSVTPGQVISVRDKSKTIVPIQVAVE-SVVGHPQFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y+R Sbjct: 178 VRLPEREE---LDADINESLIVEYYNR 201 >gi|108773320|ref|YP_635875.1| ribosomal protein S4 [Oltmannsiellopsis viridis] gi|122195135|sp|Q20EX0|RR4_OLTVI RecName: Full=30S ribosomal protein S4, chloroplastic gi|82541902|gb|ABB81943.1| ribosomal protein S4 [Oltmannsiellopsis viridis] Length = 200 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE L G + PG HG +K S +G++L+ KQK++ Sbjct: 1 MSRYRGPRLRIIRRLGE-LPGFTSKTTTR-TSSPGQHGGSNFAKSSAYGIRLQEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I+E++ S K+A R +G T L+ LE RLD +V+R PT+ AARQ ++H H Sbjct: 59 NYG-ITERQLLSYVKKAKRMKGSTGEVLLQLLEMRLDNVVFRLGMAPTVVAARQLISHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VN + V I SY C+ DVI V+ K+ V EA+ A +VP ++S N +++V Sbjct: 118 IVVNDQKVTIPSYACQVKDVISVRAKNNSRKMVTEANSTATANVPSHLSWNKESLVGVVN 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 178 KVIDRKD---VGLQLNELLVVEYYSR 200 >gi|323344662|ref|ZP_08084886.1| 30S ribosomal protein S4 [Prevotella oralis ATCC 33269] gi|323093932|gb|EFZ36509.1| 30S ribosomal protein S4 [Prevotella oralis ATCC 33269] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MAKYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRKKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F+ A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFERAAKADGITGEVLLQNLESRLDNVVFRLGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G ++ V++K+K L + A +I + ++ F+ Sbjct: 119 IVVDGKVVNIPSYSVKPGQIVGVREKAKSLEVIETALAGFNHSKYPWIEWDDNSKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|149390356|ref|YP_001294354.1| ribosomal protein S4 [Dioscorea elephantipes] gi|172048696|sp|A6MMK9|RR4_DIOEL RecName: Full=30S ribosomal protein S4, chloroplastic gi|148668048|gb|ABR01432.1| ribosomal protein S4 [Dioscorea elephantipes] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDFKNQSRFGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTEQQLLRYVHIAGKAKGSTDQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + + + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITSKDKQRSKVLIQNSIESSPHEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---LIGLKINELLVVEYYSR 199 >gi|294337248|emb|CAQ52773.1| ribosomal protein S4 [Porotrichum substriatum] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPHVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|78186094|ref|YP_374137.1| 30S ribosomal protein S4 [Chlorobium luteolum DSM 273] gi|90101702|sp|Q3B6D7|RS4_PELLD RecName: Full=30S ribosomal protein S4 gi|78165996|gb|ABB23094.1| SSU ribosomal protein S4P [Chlorobium luteolum DSM 273] Length = 203 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 122/207 (58%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALSPKAEKYLERRPFAPGQHGQGRRGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ +E RLD +V+RA F P+ ARQ V+H H Sbjct: 61 LYG-ILEKQFRNYYKKAVSQRGVTGDNLVKLIERRLDNVVFRAGFAPSRAGARQLVSHSH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR VNI S+ GD+IE +QKS+ + +V +A A + +P +I V+ N A F Sbjct: 120 LLVNGRKVNIPSFLVSPGDLIEFRQKSRNMDAVTDALNRAPDARIPAWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P V LVVE YS+ Sbjct: 180 LSVPER---VDIQEPYNEQLVVELYSK 203 >gi|149926591|ref|ZP_01914851.1| 30S ribosomal protein S4 [Limnobacter sp. MED105] gi|149824520|gb|EDM83736.1| 30S ribosomal protein S4 [Limnobacter sp. MED105] Length = 207 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKCKLSRREGTDLSLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGQQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA R +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFAEASRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG++VNI SY K DVI +++KSK A ++E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGKAVNIPSYSVKLNDVISIREKSKTQARIVESVTLAEQMGFPLWVNVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +F +P + +L+VE YSR Sbjct: 177 KKLEGSFKSVPERAD---LSQEINESLIVELYSR 207 >gi|166092896|gb|ABY82408.1| ribosomal protein S4 [Agrostemma githago] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLFKYVRIARKAKGSTGQVLXXLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTITAKDEQKSRALIQNYLDSSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|227550803|ref|ZP_03980852.1| 30S ribosomal protein S4 [Enterococcus faecium TX1330] gi|257878795|ref|ZP_05658448.1| ribosomal protein S4 [Enterococcus faecium 1,230,933] gi|257881433|ref|ZP_05661086.1| ribosomal protein S4 [Enterococcus faecium 1,231,502] gi|257885703|ref|ZP_05665356.1| ribosomal protein S4 [Enterococcus faecium 1,231,501] gi|257887941|ref|ZP_05667594.1| ribosomal protein S4 [Enterococcus faecium 1,141,733] gi|257890654|ref|ZP_05670307.1| ribosomal protein S4 [Enterococcus faecium 1,231,410] gi|257893257|ref|ZP_05672910.1| ribosomal protein S4 [Enterococcus faecium 1,231,408] gi|257896441|ref|ZP_05676094.1| ribosomal protein S4 [Enterococcus faecium Com12] gi|257899415|ref|ZP_05679068.1| ribosomal protein S4 [Enterococcus faecium Com15] gi|258615136|ref|ZP_05712906.1| 30S ribosomal protein S4 [Enterococcus faecium DO] gi|260558361|ref|ZP_05830557.1| ribosomal protein S4 [Enterococcus faecium C68] gi|261207068|ref|ZP_05921757.1| ribosomal protein S4 [Enterococcus faecium TC 6] gi|289565930|ref|ZP_06446370.1| 30S ribosomal protein S4 [Enterococcus faecium D344SRF] gi|293379587|ref|ZP_06625726.1| ribosomal protein S4 [Enterococcus faecium PC4.1] gi|293556844|ref|ZP_06675405.1| ribosomal protein S4 [Enterococcus faecium E1039] gi|293563783|ref|ZP_06678222.1| ribosomal protein S4 [Enterococcus faecium E1162] gi|293567853|ref|ZP_06679194.1| ribosomal protein S4 [Enterococcus faecium E1071] gi|294614629|ref|ZP_06694533.1| ribosomal protein S4 [Enterococcus faecium E1636] gi|294618566|ref|ZP_06698125.1| ribosomal protein S4 [Enterococcus faecium E1679] gi|294622064|ref|ZP_06701197.1| ribosomal protein S4 [Enterococcus faecium U0317] gi|314938819|ref|ZP_07846090.1| ribosomal protein S4 [Enterococcus faecium TX0133a04] gi|314943624|ref|ZP_07850378.1| ribosomal protein S4 [Enterococcus faecium TX0133C] gi|314948703|ref|ZP_07852076.1| ribosomal protein S4 [Enterococcus faecium TX0082] gi|314952153|ref|ZP_07855171.1| ribosomal protein S4 [Enterococcus faecium TX0133A] gi|314991873|ref|ZP_07857330.1| ribosomal protein S4 [Enterococcus faecium TX0133B] gi|314996586|ref|ZP_07861621.1| ribosomal protein S4 [Enterococcus faecium TX0133a01] gi|227180040|gb|EEI61012.1| 30S ribosomal protein S4 [Enterococcus faecium TX1330] gi|257813023|gb|EEV41781.1| ribosomal protein S4 [Enterococcus faecium 1,230,933] gi|257817091|gb|EEV44419.1| ribosomal protein S4 [Enterococcus faecium 1,231,502] gi|257821559|gb|EEV48689.1| ribosomal protein S4 [Enterococcus faecium 1,231,501] gi|257823995|gb|EEV50927.1| ribosomal protein S4 [Enterococcus faecium 1,141,733] gi|257827014|gb|EEV53640.1| ribosomal protein S4 [Enterococcus faecium 1,231,410] gi|257829636|gb|EEV56243.1| ribosomal protein S4 [Enterococcus faecium 1,231,408] gi|257833006|gb|EEV59427.1| ribosomal protein S4 [Enterococcus faecium Com12] gi|257837327|gb|EEV62401.1| ribosomal protein S4 [Enterococcus faecium Com15] gi|260075535|gb|EEW63841.1| ribosomal protein S4 [Enterococcus faecium C68] gi|260078696|gb|EEW66398.1| ribosomal protein S4 [Enterococcus faecium TC 6] gi|289162303|gb|EFD10163.1| 30S ribosomal protein S4 [Enterococcus faecium D344SRF] gi|291589438|gb|EFF21245.1| ribosomal protein S4 [Enterococcus faecium E1071] gi|291592531|gb|EFF24136.1| ribosomal protein S4 [Enterococcus faecium E1636] gi|291595179|gb|EFF26513.1| ribosomal protein S4 [Enterococcus faecium E1679] gi|291598362|gb|EFF29446.1| ribosomal protein S4 [Enterococcus faecium U0317] gi|291600928|gb|EFF31219.1| ribosomal protein S4 [Enterococcus faecium E1039] gi|291604264|gb|EFF33759.1| ribosomal protein S4 [Enterococcus faecium E1162] gi|292641803|gb|EFF59974.1| ribosomal protein S4 [Enterococcus faecium PC4.1] gi|313589275|gb|EFR68120.1| ribosomal protein S4 [Enterococcus faecium TX0133a01] gi|313593578|gb|EFR72423.1| ribosomal protein S4 [Enterococcus faecium TX0133B] gi|313595685|gb|EFR74530.1| ribosomal protein S4 [Enterococcus faecium TX0133A] gi|313597661|gb|EFR76506.1| ribosomal protein S4 [Enterococcus faecium TX0133C] gi|313641830|gb|EFS06410.1| ribosomal protein S4 [Enterococcus faecium TX0133a04] gi|313644875|gb|EFS09455.1| ribosomal protein S4 [Enterococcus faecium TX0082] Length = 203 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 78/205 (38%), Positives = 118/205 (57%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSGTGKE-LARRPYAPGQHGPNSRGKQSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRNLFVKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G VI V++KS+ + +V EA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYHVEVGQVISVREKSQNIVTVKEAVE-ATVGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P D YP + LVVE+Y Sbjct: 178 TRLPER--DELYP-EIDEALVVEYY 199 >gi|294337096|emb|CAQ52698.1| ribosomal protein S4 [Cryphaea amurensis] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|6002065|emb|CAA58939.1| ribosomal protein S4 [Musa x paradisiaca] Length = 196 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + L+ ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIALSPPEELPKHLTFDSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIDLKINELLVVEY 196 >gi|28897055|ref|NP_796660.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus RIMD 2210633] gi|153840228|ref|ZP_01992895.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ3810] gi|156973074|ref|YP_001443981.1| 30S ribosomal protein S4 [Vibrio harveyi ATCC BAA-1116] gi|260877973|ref|ZP_05890328.1| ribosomal protein S4 [Vibrio parahaemolyticus AN-5034] gi|260895673|ref|ZP_05904169.1| ribosomal protein S4 [Vibrio parahaemolyticus Peru-466] gi|260903551|ref|ZP_05911946.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ4037] gi|262392492|ref|YP_003284346.1| 30S ribosomal protein S4p [Vibrio sp. Ex25] gi|269964713|ref|ZP_06178951.1| 30S ribosomal protein S4 [Vibrio alginolyticus 40B] gi|31340377|sp|Q87SZ1|RS4_VIBPA RecName: Full=30S ribosomal protein S4 gi|171769916|sp|A7N0H7|RS4_VIBHB RecName: Full=30S ribosomal protein S4 gi|28805263|dbj|BAC58544.1| ribosomal protein S4 [Vibrio parahaemolyticus RIMD 2210633] gi|149746105|gb|EDM57235.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ3810] gi|156524668|gb|ABU69754.1| hypothetical protein VIBHAR_00753 [Vibrio harveyi ATCC BAA-1116] gi|262336086|gb|ACY49881.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. Ex25] gi|269830612|gb|EEZ84833.1| 30S ribosomal protein S4 [Vibrio alginolyticus 40B] gi|308089501|gb|EFO39196.1| ribosomal protein S4 [Vibrio parahaemolyticus Peru-466] gi|308090096|gb|EFO39791.1| ribosomal protein S4 [Vibrio parahaemolyticus AN-5034] gi|308109051|gb|EFO46591.1| ribosomal protein S4 [Vibrio parahaemolyticus AQ4037] gi|328471858|gb|EGF42735.1| 30S ribosomal protein S4 [Vibrio parahaemolyticus 10329] Length = 206 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ A + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEQLIVELYSK 206 >gi|303247017|ref|ZP_07333293.1| ribosomal protein S4 [Desulfovibrio fructosovorans JJ] gi|302491724|gb|EFL51607.1| ribosomal protein S4 [Desulfovibrio fructosovorans JJ] Length = 208 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K +I RR G L+ + K R Y PG HG+ RK K S + + LR Sbjct: 1 MARYTEAKCRICRREGAKLFLKGDRCYTDKCAYERRPYAPGQHGRIRK-KMSDYAVMLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F+ AD +G T NL+ FLE R+D ++YR F + ARQ Sbjct: 60 KQKTRRMYG-ILEGQFRAYFQRADMKKGVTGENLLCFLERRMDNVIYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H VNGR V I S + K GDVIEV+++++Q + EA Q +A R P ++ V+ + Sbjct: 119 LVRHGIFTVNGRRVTIPSLQVKVGDVIEVRERNRQSPIIQEAQQVIARRGCPAWLEVDGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +DV +P + L+VE YS+ Sbjct: 179 KLKGKVNALPTR-EDVQFP--INEQLIVELYSK 208 >gi|288929314|ref|ZP_06423159.1| ribosomal protein S4 [Prevotella sp. oral taxon 317 str. F0108] gi|288329416|gb|EFC68002.1| ribosomal protein S4 [Prevotella sp. oral taxon 317 str. F0108] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKTSEYGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKASGITGEVLLQNLESRLDNVVFRLGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G V+ V++K+K L + A +I + + F+ Sbjct: 119 IVVDGKVVNIPSYSVKAGQVVGVREKAKSLEVIEAALAGFNHSKYPWIEWDDASKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|329770399|ref|ZP_08261781.1| 30S ribosomal protein S4 [Gemella sanguinis M325] gi|328836522|gb|EGF86182.1| 30S ribosomal protein S4 [Gemella sanguinis M325] Length = 200 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K RR+G +L G K + R Y PG HG + K S +GLQL+ KQK++ Sbjct: 1 MARFTGSTWKKSRRLGISLSGTGKE-LAKRPYAPGQHGPNLRKKLSEYGLQLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +G ++EK+FR +F +A + +G N ++ L +RLD++VY T ARQ VNH H Sbjct: 60 LHG-MNEKQFRKLFDKAGKLQGLHGANFMALLATRLDSVVYSLGLARTNRQARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SY K G V+ V++KS+ L + EA ++ VPEY++ + D + + V Sbjct: 119 ILVDGKKVDIASYAVKPGQVVSVREKSRNLDIIKEAVEITNF-VPEYLTFDADKLEGSLV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + L+VE+YSR Sbjct: 178 RFPERSE---LHPEINEQLIVEYYSR 200 >gi|88803725|ref|ZP_01119249.1| 30S ribosomal protein S4 [Polaribacter irgensii 23-P] gi|88780458|gb|EAR11639.1| 30S ribosomal protein S4 [Polaribacter irgensii 23-P] Length = 201 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K+ R+Y PG HG RR+ K S + QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDKN-FEKRNYPPGQHGNARRRGKKSEYATQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F ++FK+A S+G T L+ ESRLD +VYR + ARQ V+HR Sbjct: 60 YTYG-ILERQFSNLFKKASASQGITGEILVQLCESRLDNVVYRMGVSTSRSGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY EGDV+ V++KSK + ++ ++ + +V E+++ N D TF Sbjct: 119 HITVNGEIVNVPSYNLLEGDVVAVREKSKSIQAIEDSLA-SNSNVYEWLTWNSDKKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V++P+ L+ P ++ L+VE YS+ Sbjct: 178 VKVPARLQ---IPENIKEQLIVELYSK 201 >gi|329117696|ref|ZP_08246413.1| ribosomal protein S4 [Streptococcus parauberis NCFD 2020] gi|326908101|gb|EGE55015.1| ribosomal protein S4 [Streptococcus parauberis NCFD 2020] Length = 203 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQAIKIKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDTEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|294337142|emb|CAQ52721.1| ribosomal protein S4 [Heterocladium macounii] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLRSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ VP++++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKVPDHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337254|emb|CAQ52776.1| ribosomal protein S4 [Pseudotaxiphyllum fauriei] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPKDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337263|emb|CAQ52780.1| ribosomal protein S4 [Pseudoscleropodium purum] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNMEFYQKYKIPNHLNYSFLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|67035626|gb|AAY62744.1| small ribosomal protein subunit 4 [Paraleucobryum enerve] Length = 199 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I ++ + K A +++ +++ +P +++ + + Sbjct: 116 VNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDQESIGLKINELLVVEYYSR 197 >gi|26399112|sp|P59146|RR4_LEUSC RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504367|emb|CAC80644.1| small ribosomal protein 4 [Leucodon sciuroides] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN VNI SYRCK D I +K + K A + + + + +P +++ + Sbjct: 117 ILVNDCIVNIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQNSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|26399172|sp|Q9FSE4|RR4_PLAAD RecName: Full=30S ribosomal protein S4, chloroplastic gi|10798670|emb|CAC12828.1| small ribosomal protein 4 [Plagiochila adiantoides] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSTPNKKVSQYRIRLEEKQKLRS 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LAERQLLKYMRIARKAKGSTGQILLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + +R +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIGNKQKSRFIITKNINSFQRLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|229524553|ref|ZP_04413958.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae bv. albensis VL426] gi|229338134|gb|EEO03151.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++A +R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPPWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEQLIVELYSK 206 >gi|63145904|gb|AAY33890.1| small ribosomal protein 4 [Jensenia spinosa] Length = 202 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G L G + +RS G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRAKIIRRLGT-LPGLSHKMLGSRS---GYTNQLTANKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHR Sbjct: 57 FHYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVAT 178 H+L+N VNI SY CK DVI +K + + + + + L E+ +P +++ + + Sbjct: 116 HILINDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGS 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 VNQIIDR---EWIRLKINELLVVEYYSR 200 >gi|288925689|ref|ZP_06419621.1| ribosomal protein S4 [Prevotella buccae D17] gi|315606478|ref|ZP_07881493.1| 30S ribosomal protein S4 [Prevotella buccae ATCC 33574] gi|288337627|gb|EFC75981.1| ribosomal protein S4 [Prevotella buccae D17] gi|315251884|gb|EFU31858.1| 30S ribosomal protein S4 [Prevotella buccae ATCC 33574] Length = 201 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K K KI RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MAKYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKVSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F +A ++ G T L+ LE RLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFDKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ V+I SY K G V+ V++K+K L + A ++ + + F+ Sbjct: 119 IVVDGKVVSIPSYSVKAGQVVGVREKAKSLEVIEAALAGFNHSKYPWLEWDQNTKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|209521361|ref|ZP_03270074.1| ribosomal protein S4 [Burkholderia sp. H160] gi|209498181|gb|EDZ98323.1| ribosomal protein S4 [Burkholderia sp. H160] Length = 207 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRLKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V H+ + VNG NI S + K GDV+ V+++ ++ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVGHKAITVNGVVSNIPSMQVKAGDVVAVREQKRKQARIIEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF + P + +L+VE YSR Sbjct: 177 KKFEGTFKQKPER---SDIAGDINESLIVELYSR 207 >gi|294337090|emb|CAQ52695.1| ribosomal protein S4 [Calyptothecium recurvulum] Length = 202 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SY+CK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|27364191|ref|NP_759719.1| 30S ribosomal protein S4 [Vibrio vulnificus CMCP6] gi|37678582|ref|NP_933191.1| 30S ribosomal protein S4 [Vibrio vulnificus YJ016] gi|320157577|ref|YP_004189956.1| 30S ribosomal protein S4p (S9e) [Vibrio vulnificus MO6-24/O] gi|31340392|sp|Q8DE62|RS4_VIBVU RecName: Full=30S ribosomal protein S4 gi|41017818|sp|Q7MPG5|RS4_VIBVY RecName: Full=30S ribosomal protein S4 gi|27360309|gb|AAO09246.1| ribosomal protein S4 [Vibrio vulnificus CMCP6] gi|37197322|dbj|BAC93162.1| ribosomal protein S4 [Vibrio vulnificus YJ016] gi|319932889|gb|ADV87753.1| SSU ribosomal protein S4p (S9e) [Vibrio vulnificus MO6-24/O] Length = 206 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ + EA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYAEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQTRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEQLIVELYSK 206 >gi|221064828|ref|ZP_03540933.1| ribosomal protein S4 [Comamonas testosteroni KF-1] gi|220709851|gb|EED65219.1| ribosomal protein S4 [Comamonas testosteroni KF-1] Length = 207 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 91/214 (42%), Positives = 131/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +T+ PG HG+ + S +GLQLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKAKFDTK---PGQHGRTSGQRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ ADR RG+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAADRKRGNTGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ + VNG+SVNI SY KEGDV+ +++KSK+ A V+EA QL A+ P ++ V+ Sbjct: 117 QLVSHKAITVNGQSVNIPSYSVKEGDVVALREKSKKQARVVEALQLAAQVGFPAWVEVSA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF + P + + + +L+VE YSR Sbjct: 177 DKAEGTFKKSPDRDE---FAADINESLIVELYSR 207 >gi|116075050|ref|ZP_01472310.1| 30S ribosomal protein S4 [Synechococcus sp. RS9916] gi|116067247|gb|EAU73001.1| 30S ribosomal protein S4 [Synechococcus sp. RS9916] Length = 202 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQDGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ + +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKKLAEANLEFPGLANVPPHLELDKSKLSAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 ---IGRSEREWVALEINELLVVEYYSR 200 >gi|67036092|gb|AAY62972.1| small ribosomal protein subunit 4 [Cyrto-hypnum schistocalyx] Length = 202 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGTLPGLTTKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|167587747|ref|ZP_02380135.1| 30S ribosomal protein S4 [Burkholderia ubonensis Bu] Length = 207 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ + +++V+ Sbjct: 117 QLVSHKAITVNGIVANVPSQQVKAGDVIAIREKAKKQARIVEALSLAEQGGLASWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQMPERAD---IAGDINESLIVELYSR 207 >gi|26399182|sp|Q9FTC7|RR4_ANTPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|9971065|emb|CAC07204.1| small ribosomal protein 4 [Anthoceros punctatus] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTSKLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ VP +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQPKSETMISKNIELYQKSKVPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|229916421|ref|YP_002885067.1| ribosomal protein S4 [Exiguobacterium sp. AT1b] gi|259495280|sp|C4L4A0|RS4_EXISA RecName: Full=30S ribosomal protein S4 gi|229467850|gb|ACQ69622.1| ribosomal protein S4 [Exiguobacterium sp. AT1b] Length = 199 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L K + R Y PG HG RK K S + LQL+AKQ ++ Sbjct: 1 MARYTGPAWKLSRRLGISLSETGKE-LAKRPYAPGQHGNGRK-KISEYDLQLQAKQALRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR IF +A + G N + LESRLD +VYR T ARQ VNH H Sbjct: 59 MYG-VNEKQFRRIFNDAGKMPGIHGENFMFLLESRLDNLVYRFGLARTRRGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G V+I SYR K G VI V++KSK + ++ EA ++A +++S + + + TFV Sbjct: 118 ITVDGSRVDIASYRVKPGQVIAVREKSKNVKAIAEALEVAPATK-DFVSFDAEKLEGTFV 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + ++ L+VE+YSR Sbjct: 177 RLPERAE---LNDQIKEQLIVEYYSR 199 >gi|53720796|ref|YP_109782.1| 30S ribosomal protein S4 [Burkholderia pseudomallei K96243] gi|53723829|ref|YP_104141.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 23344] gi|67640848|ref|ZP_00439641.1| 30S ribosomal protein S4 [Burkholderia mallei GB8 horse 4] gi|76811379|ref|YP_335115.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710b] gi|121601043|ref|YP_994431.1| 30S ribosomal protein S4 [Burkholderia mallei SAVP1] gi|124384949|ref|YP_001027920.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10229] gi|126439277|ref|YP_001060725.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 668] gi|126448998|ref|YP_001083015.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10247] gi|134283223|ref|ZP_01769924.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 305] gi|167001674|ref|ZP_02267466.1| 30S ribosomal protein S4 [Burkholderia mallei PRL-20] gi|167721552|ref|ZP_02404788.1| 30S ribosomal protein S4 [Burkholderia pseudomallei DM98] gi|167740526|ref|ZP_02413300.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 14] gi|167817731|ref|ZP_02449411.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 91] gi|167826128|ref|ZP_02457599.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 9] gi|167896212|ref|ZP_02483614.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 7894] gi|167904594|ref|ZP_02491799.1| 30S ribosomal protein S4 [Burkholderia pseudomallei NCTC 13177] gi|167912859|ref|ZP_02499950.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 112] gi|167920818|ref|ZP_02507909.1| 30S ribosomal protein S4 [Burkholderia pseudomallei BCC215] gi|226198240|ref|ZP_03793811.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pakistan 9] gi|237814120|ref|YP_002898571.1| ribosomal protein S4 [Burkholderia pseudomallei MSHR346] gi|254175265|ref|ZP_04881926.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 10399] gi|254180364|ref|ZP_04886962.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1655] gi|254190327|ref|ZP_04896835.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pasteur 52237] gi|254198547|ref|ZP_04904968.1| 30S ribosomal protein S4 [Burkholderia pseudomallei S13] gi|254201214|ref|ZP_04907578.1| 30S ribosomal protein S4 [Burkholderia mallei FMH] gi|254206555|ref|ZP_04912906.1| 30S ribosomal protein S4 [Burkholderia mallei JHU] gi|254260076|ref|ZP_04951130.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710a] gi|254300601|ref|ZP_04968046.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 406e] gi|61215450|sp|Q62GN0|RS4_BURMA RecName: Full=30S ribosomal protein S4 gi|61215463|sp|Q63Q36|RS4_BURPS RecName: Full=30S ribosomal protein S4 gi|90101678|sp|Q3JMT8|RS4_BURP1 RecName: Full=30S ribosomal protein S4 gi|171769469|sp|A1V878|RS4_BURMS RecName: Full=30S ribosomal protein S4 gi|171769829|sp|A2S7K1|RS4_BURM9 RecName: Full=30S ribosomal protein S4 gi|171855085|sp|A3MRX9|RS4_BURM7 RecName: Full=30S ribosomal protein S4 gi|171855116|sp|A3NEF4|RS4_BURP6 RecName: Full=30S ribosomal protein S4 gi|52211210|emb|CAH37199.1| 30S ribosomal protein S4 [Burkholderia pseudomallei K96243] gi|52427252|gb|AAU47845.1| ribosomal protein S4 [Burkholderia mallei ATCC 23344] gi|76580832|gb|ABA50307.1| ribosomal protein S4 [Burkholderia pseudomallei 1710b] gi|121229853|gb|ABM52371.1| 30S ribosomal protein S4 [Burkholderia mallei SAVP1] gi|124292969|gb|ABN02238.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10229] gi|126218770|gb|ABN82276.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 668] gi|126241868|gb|ABO04961.1| 30S ribosomal protein S4 [Burkholderia mallei NCTC 10247] gi|134245418|gb|EBA45511.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 305] gi|147747108|gb|EDK54184.1| 30S ribosomal protein S4 [Burkholderia mallei FMH] gi|147752097|gb|EDK59163.1| 30S ribosomal protein S4 [Burkholderia mallei JHU] gi|157810528|gb|EDO87698.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 406e] gi|157938003|gb|EDO93673.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pasteur 52237] gi|160696310|gb|EDP86280.1| 30S ribosomal protein S4 [Burkholderia mallei ATCC 10399] gi|169655287|gb|EDS87980.1| 30S ribosomal protein S4 [Burkholderia pseudomallei S13] gi|184210903|gb|EDU07946.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1655] gi|225929760|gb|EEH25776.1| 30S ribosomal protein S4 [Burkholderia pseudomallei Pakistan 9] gi|237504346|gb|ACQ96664.1| ribosomal protein S4 [Burkholderia pseudomallei MSHR346] gi|238521643|gb|EEP85093.1| 30S ribosomal protein S4 [Burkholderia mallei GB8 horse 4] gi|243062571|gb|EES44757.1| 30S ribosomal protein S4 [Burkholderia mallei PRL-20] gi|254218765|gb|EET08149.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1710a] Length = 207 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|12642228|gb|AAK00196.1| rps4 [Physcomitrella patens] Length = 194 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S Q K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN Sbjct: 56 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 VDIPSYRCKPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 DRESIGLKINELLVVEYYSR 192 >gi|222099994|ref|YP_002534562.1| 30S ribosomal protein S4 [Thermotoga neapolitana DSM 4359] gi|254764618|sp|B9K8B3|RS4_THENN RecName: Full=30S ribosomal protein S4 gi|221572384|gb|ACM23196.1| 30S ribosomal protein S4 [Thermotoga neapolitana DSM 4359] Length = 209 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K + R Y PG HGQRR K + +G+QLRA Sbjct: 1 MARYTGPVCRLCRREGMKLYLKGERCYTDKCAFDRRPYAPGQHGQRRS-KLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG I E++F ++A + GDT NLI LE+RLD +VYR F ARQ Sbjct: 60 KQTVKRIYG-ILERQFERYVEKAMKRAGDTRENLIQLLEARLDNVVYRMGFAINRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 VNH H LVNG+ V+I SY + DV+EV++KS+ + + +A + ER+ +I V+ D Sbjct: 119 LVNHGHFLVNGKKVDIPSYLLRPNDVVEVREKSRDIEVIKKAIEFNRERNTVPWIEVDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N TF+R P + PV +Q V+EFYSR Sbjct: 179 NYKGTFLRYPRLEEVTDLPVDLQT--VIEFYSR 209 >gi|41323099|gb|AAR99779.1| small ribosomal protein 4 [Plagiochila cucullifolia var. anomala] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSNYI---DRSALNKKVFQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + + ++R +P ++ + + + Sbjct: 117 ISINNDVVDIPSYNCEPGDIITIGNKQKSRFIITKNINSSQRLKIPSHLIFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|294337106|emb|CAQ52703.1| ribosomal protein S4 [Distichophyllum crispulum] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G L G + +S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGV-LPGLTNKILQLKSNSINQ--STSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P +++ N Sbjct: 117 ILVNNFIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|53803440|ref|YP_114764.1| 30S ribosomal protein S4 [Methylococcus capsulatus str. Bath] gi|61215442|sp|Q605D6|RS4_METCA RecName: Full=30S ribosomal protein S4 gi|53757201|gb|AAU91492.1| ribosomal protein S4 [Methylococcus capsulatus str. Bath] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + + ++ PG HGQ+R + S + QLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSRGKSLESKCKLDQPPGQHGQKR-PRLSDYAAQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E++FR+ + EA R +G T NL++ LESRLD +VYR F T ARQ V Sbjct: 60 KLRRIYG-IMERQFRNYYAEASRRKGSTGENLLTLLESRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 +H+ + +NGR++NI SY+ + GDV+E++ K+K V +A Q+ E+ P ++ V+ +M Sbjct: 119 SHKAINLNGRTLNIPSYQVQSGDVVEIRDKAKSQGRVKDALQVTEQYGFPSWVDVDVKSM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P + + LVVE YS+ Sbjct: 179 KGIFKSAPERSE---LGSDINEQLVVELYSK 206 >gi|28202174|ref|NP_777415.1| ribosomal protein S4 [Anthoceros formosae] gi|41688603|sp|Q85AX4|RR4_ANTFO RecName: Full=30S ribosomal protein S4, chloroplastic gi|27807876|dbj|BAC55351.1| ribosomal protein S4 [Anthoceros formosae] gi|27807997|dbj|BAC55444.1| ribosomal protein S4 [Anthoceros formosae] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P + SY + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTSKTPESKPSYI---NQSTSSRKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVN +V+I S+RCK DVI ++ + K + + E+ +P +++ N + Sbjct: 117 VLVNDCTVDIPSFRCKPQDVITIRDRQKSQNLMKRSRDSYEKYGIPNHLTFNSVQNIGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 N---ETIDRDWIGLKINELLVVEYYSR 200 >gi|294337208|emb|CAQ52753.1| ribosomal protein S4 [Miyabea fruticella] gi|294337210|emb|CAQ52754.1| ribosomal protein S4 [Miyabea rotundifolia] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337152|emb|CAQ52726.1| ribosomal protein S4 [Homalia lusitanica] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---DQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLPNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|15900029|ref|NP_344633.1| 30S ribosomal protein S4 [Streptococcus pneumoniae TIGR4] gi|15902122|ref|NP_357672.1| 30S ribosomal protein S4 [Streptococcus pneumoniae R6] gi|111656925|ref|ZP_01407747.1| hypothetical protein SpneT_02001834 [Streptococcus pneumoniae TIGR4] gi|116516581|ref|YP_815552.1| 30S ribosomal protein S4 [Streptococcus pneumoniae D39] gi|148985431|ref|ZP_01818636.1| ribosomal protein S4 [Streptococcus pneumoniae SP3-BS71] gi|148987815|ref|ZP_01819278.1| ribosomal protein S4 [Streptococcus pneumoniae SP6-BS73] gi|148993925|ref|ZP_01823308.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP9-BS68] gi|148996492|ref|ZP_01824210.1| ribosomal protein S4 [Streptococcus pneumoniae SP11-BS70] gi|149001831|ref|ZP_01826804.1| ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] gi|149007938|ref|ZP_01831516.1| ribosomal protein S4 [Streptococcus pneumoniae SP18-BS74] gi|149010947|ref|ZP_01832252.1| ribosomal protein S4 [Streptococcus pneumoniae SP19-BS75] gi|149017758|ref|ZP_01834217.1| ribosomal protein S4 [Streptococcus pneumoniae SP23-BS72] gi|168483611|ref|ZP_02708563.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1873-00] gi|168486664|ref|ZP_02711172.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1087-00] gi|168489443|ref|ZP_02713642.1| ribosomal protein S4 [Streptococcus pneumoniae SP195] gi|168492605|ref|ZP_02716748.1| ribosomal protein S4 [Streptococcus pneumoniae CDC0288-04] gi|168493783|ref|ZP_02717926.1| ribosomal protein S4 [Streptococcus pneumoniae CDC3059-06] gi|168577080|ref|ZP_02722909.1| ribosomal protein S4 [Streptococcus pneumoniae MLV-016] gi|169832653|ref|YP_001693607.1| 30S ribosomal protein S4 [Streptococcus pneumoniae Hungary19A-6] gi|182683053|ref|YP_001834800.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CGSP14] gi|194398306|ref|YP_002036801.1| 30S ribosomal protein S4 [Streptococcus pneumoniae G54] gi|221231025|ref|YP_002510177.1| 30S ribosomal protein S4 [Streptococcus pneumoniae ATCC 700669] gi|225853713|ref|YP_002735225.1| 30S ribosomal protein S4 [Streptococcus pneumoniae JJA] gi|225855868|ref|YP_002737379.1| 30S ribosomal protein S4 [Streptococcus pneumoniae P1031] gi|225857950|ref|YP_002739460.1| 30S ribosomal protein S4 [Streptococcus pneumoniae 70585] gi|225860120|ref|YP_002741629.1| 30S ribosomal protein S4 [Streptococcus pneumoniae Taiwan19F-14] gi|237649598|ref|ZP_04523850.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CCRI 1974] gi|237821538|ref|ZP_04597383.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CCRI 1974M2] gi|270291733|ref|ZP_06197949.1| ribosomal protein S4 [Streptococcus sp. M143] gi|289166998|ref|YP_003445265.1| 30S ribosomal protein S4 [Streptococcus mitis B6] gi|293364636|ref|ZP_06611357.1| 30S ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|298230010|ref|ZP_06963691.1| 30S ribosomal protein S4 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254521|ref|ZP_06978107.1| 30S ribosomal protein S4 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501873|ref|YP_003723813.1| 30S ribosomal protein S4 [Streptococcus pneumoniae TCH8431/19A] gi|303254819|ref|ZP_07340919.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS455] gi|303259128|ref|ZP_07345106.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP-BS293] gi|303260885|ref|ZP_07346834.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS292] gi|303263212|ref|ZP_07349135.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS397] gi|303267315|ref|ZP_07353176.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS457] gi|303269590|ref|ZP_07355351.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS458] gi|306826273|ref|ZP_07459607.1| 30S ribosomal protein S4 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306828536|ref|ZP_07461731.1| 30S ribosomal protein S4 [Streptococcus mitis ATCC 6249] gi|307066759|ref|YP_003875725.1| hypothetical protein SPAP_0129 [Streptococcus pneumoniae AP200] gi|307126310|ref|YP_003878341.1| 30S ribosomal protein S4 [Streptococcus pneumoniae 670-6B] gi|307702893|ref|ZP_07639841.1| ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|307705409|ref|ZP_07642267.1| ribosomal protein S4 [Streptococcus mitis SK597] gi|307707985|ref|ZP_07644460.1| ribosomal protein S4 [Streptococcus mitis NCTC 12261] gi|307710135|ref|ZP_07646579.1| ribosomal protein S4 [Streptococcus mitis SK564] gi|307711286|ref|ZP_07647707.1| ribosomal protein S4 [Streptococcus mitis SK321] gi|315612070|ref|ZP_07886987.1| 30S ribosomal protein S4 [Streptococcus sanguinis ATCC 49296] gi|322376030|ref|ZP_08050540.1| ribosomal protein S4 [Streptococcus sp. C300] gi|322378050|ref|ZP_08052537.1| ribosomal protein S4 [Streptococcus sp. M334] gi|322386473|ref|ZP_08060100.1| 30S ribosomal protein S4 [Streptococcus cristatus ATCC 51100] gi|331265518|ref|YP_004325148.1| 30S ribosomal protein S4 [Streptococcus oralis Uo5] gi|54039512|sp|P66566|RS4_STRR6 RecName: Full=30S ribosomal protein S4 gi|54041964|sp|P66565|RS4_STRPN RecName: Full=30S ribosomal protein S4 gi|122279509|sp|Q04MZ3|RS4_STRP2 RecName: Full=30S ribosomal protein S4 gi|226695082|sp|B5E5W8|RS4_STRP4 RecName: Full=30S ribosomal protein S4 gi|226695083|sp|B1I7Y6|RS4_STRPI RecName: Full=30S ribosomal protein S4 gi|226695084|sp|B2IRG4|RS4_STRPS RecName: Full=30S ribosomal protein S4 gi|254764612|sp|C1C9Y5|RS4_STRP7 RecName: Full=30S ribosomal protein S4 gi|254764613|sp|B8ZJX3|RS4_STRPJ RecName: Full=30S ribosomal protein S4 gi|254764615|sp|C1CBQ4|RS4_STRZJ RecName: Full=30S ribosomal protein S4 gi|254764616|sp|C1CHZ1|RS4_STRZP RecName: Full=30S ribosomal protein S4 gi|254764617|sp|C1CNV7|RS4_STRZT RecName: Full=30S ribosomal protein S4 gi|14971552|gb|AAK74273.1| ribosomal protein S4 [Streptococcus pneumoniae TIGR4] gi|15457613|gb|AAK98882.1| 30S Ribosomal protein S4 [Streptococcus pneumoniae R6] gi|116077157|gb|ABJ54877.1| ribosomal protein S4 [Streptococcus pneumoniae D39] gi|147757067|gb|EDK64106.1| ribosomal protein S4 [Streptococcus pneumoniae SP11-BS70] gi|147760289|gb|EDK67278.1| ribosomal protein S4 [Streptococcus pneumoniae SP14-BS69] gi|147760561|gb|EDK67536.1| ribosomal protein S4 [Streptococcus pneumoniae SP18-BS74] gi|147764583|gb|EDK71513.1| ribosomal protein S4 [Streptococcus pneumoniae SP19-BS75] gi|147922389|gb|EDK73509.1| ribosomal protein S4 [Streptococcus pneumoniae SP3-BS71] gi|147926279|gb|EDK77352.1| ribosomal protein S4 [Streptococcus pneumoniae SP6-BS73] gi|147927632|gb|EDK78658.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP9-BS68] gi|147931322|gb|EDK82300.1| ribosomal protein S4 [Streptococcus pneumoniae SP23-BS72] gi|168995155|gb|ACA35767.1| ribosomal protein S4 [Streptococcus pneumoniae Hungary19A-6] gi|172043018|gb|EDT51064.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1873-00] gi|182628387|gb|ACB89335.1| 30S ribosomal protein S4 [Streptococcus pneumoniae CGSP14] gi|183570308|gb|EDT90836.1| ribosomal protein S4 [Streptococcus pneumoniae CDC1087-00] gi|183572140|gb|EDT92668.1| ribosomal protein S4 [Streptococcus pneumoniae SP195] gi|183573248|gb|EDT93776.1| ribosomal protein S4 [Streptococcus pneumoniae CDC0288-04] gi|183576019|gb|EDT96547.1| ribosomal protein S4 [Streptococcus pneumoniae CDC3059-06] gi|183577316|gb|EDT97844.1| ribosomal protein S4 [Streptococcus pneumoniae MLV-016] gi|194357973|gb|ACF56421.1| 30S ribosomal protein S4 [Streptococcus pneumoniae G54] gi|220673485|emb|CAR67956.1| 30S ribosomal protein S4 [Streptococcus pneumoniae ATCC 700669] gi|225720035|gb|ACO15889.1| ribosomal protein S4 [Streptococcus pneumoniae 70585] gi|225723223|gb|ACO19076.1| ribosomal protein S4 [Streptococcus pneumoniae JJA] gi|225724355|gb|ACO20207.1| ribosomal protein S4 [Streptococcus pneumoniae P1031] gi|225727282|gb|ACO23133.1| ribosomal protein S4 [Streptococcus pneumoniae Taiwan19F-14] gi|270279818|gb|EFA25659.1| ribosomal protein S4 [Streptococcus sp. M143] gi|288906563|emb|CBJ21396.1| 30S ribosomal protein S4 [Streptococcus mitis B6] gi|291316894|gb|EFE57326.1| 30S ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|298237468|gb|ADI68599.1| 30S ribosomal protein S4 [Streptococcus pneumoniae TCH8431/19A] gi|301793388|emb|CBW35753.1| 30S ribosomal protein S4 [Streptococcus pneumoniae INV104] gi|301799257|emb|CBW31777.1| 30S ribosomal protein S4 [Streptococcus pneumoniae OXC141] gi|301801046|emb|CBW33713.1| 30S ribosomal protein S4 [Streptococcus pneumoniae INV200] gi|302598256|gb|EFL65302.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS455] gi|302637722|gb|EFL68208.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP14-BS292] gi|302639546|gb|EFL70003.1| 30S ribosomal protein S4 [Streptococcus pneumoniae SP-BS293] gi|302640864|gb|EFL71250.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS458] gi|302643166|gb|EFL73452.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS457] gi|302646985|gb|EFL77209.1| 30S ribosomal protein S4 [Streptococcus pneumoniae BS397] gi|304429335|gb|EFM32420.1| 30S ribosomal protein S4 [Streptococcus mitis ATCC 6249] gi|304431549|gb|EFM34531.1| 30S ribosomal protein S4 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306408296|gb|ADM83723.1| hypothetical protein SPAP_0129 [Streptococcus pneumoniae AP200] gi|306483372|gb|ADM90241.1| ribosomal protein S4 [Streptococcus pneumoniae 670-6B] gi|307616050|gb|EFN95248.1| ribosomal protein S4 [Streptococcus mitis NCTC 12261] gi|307616937|gb|EFN96116.1| ribosomal protein S4 [Streptococcus mitis SK321] gi|307619115|gb|EFN98247.1| ribosomal protein S4 [Streptococcus mitis SK564] gi|307621040|gb|EFO00119.1| ribosomal protein S4 [Streptococcus mitis SK597] gi|307623573|gb|EFO02562.1| ribosomal protein S4 [Streptococcus oralis ATCC 35037] gi|315315872|gb|EFU63907.1| 30S ribosomal protein S4 [Streptococcus sanguinis ATCC 49296] gi|321269392|gb|EFX52325.1| 30S ribosomal protein S4 [Streptococcus cristatus ATCC 51100] gi|321278980|gb|EFX56023.1| ribosomal protein S4 [Streptococcus sp. C300] gi|321281032|gb|EFX58045.1| ribosomal protein S4 [Streptococcus sp. M334] gi|326682190|emb|CBY99806.1| 30S ribosomal protein S4 [Streptococcus oralis Uo5] gi|327390493|gb|EGE88833.1| ribosomal protein S4 [Streptococcus pneumoniae GA04375] gi|332075747|gb|EGI86214.1| ribosomal protein S4 [Streptococcus pneumoniae GA17570] gi|332076539|gb|EGI87001.1| ribosomal protein S4 [Streptococcus pneumoniae GA17545] gi|332077392|gb|EGI87853.1| ribosomal protein S4 [Streptococcus pneumoniae GA41301] Length = 203 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|315178982|gb|ADT85896.1| 30S ribosomal protein S4 [Vibrio furnissii NCTC 11218] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ +++K+K+ + + A ++A +R+ P +I V+ +M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASSM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEQLIVELYSK 206 >gi|63191679|gb|AAY34801.1| small ribosomal protein subunit 4 [Isodrepanium lentulum] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + KI RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K++ K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKKQQKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LNRESIGLKINELLVVEYYSR 200 >gi|260909776|ref|ZP_05916470.1| 30S ribosomal protein S4 [Prevotella sp. oral taxon 472 str. F0295] gi|260636201|gb|EEX54197.1| 30S ribosomal protein S4 [Prevotella sp. oral taxon 472 str. F0295] Length = 201 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR GE ++G K ++ R++ PG HG R+ K S +G L KQK K Sbjct: 1 MARYIGPKSKIARRFGEPIFGADKV-LSKRNFPPGQHGNNRRRKTSEYGAMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A ++ G T L+ LESRLD +V+R PT AARQ V H+H Sbjct: 60 TYG-VLERQFRNMFEKAAKASGITGEVLLQNLESRLDNVVFRLGLAPTRAAARQLVGHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G+ VNI SY K G ++ V++K+K L + A +I + + F+ Sbjct: 119 IVVDGKVVNIPSYSVKAGQIVGVREKAKSLEVIEAALAGFNHSKYPWIEWDDASKSGKFL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|221133739|ref|ZP_03560044.1| 30S ribosomal protein S4 [Glaciecola sp. HTCC2999] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG R+ + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKLDT---APGQHG-ARRGRLSDYGIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEQRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+ VNI S++ + V++K+K+ A ++ A +LA +R+ P +I V+ Sbjct: 116 QLVSHKAICVNGQVVNIPSFKVSAETNVSVREKAKKQARIISAVELADQREKPTWIEVDG 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P + L+VE YS+ Sbjct: 176 AKLSGDFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|12642230|gb|AAK00197.1| rps4 [Physcomitrium pyriforme] Length = 191 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 9/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I Sbjct: 56 LNYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 PSYRCKPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI---LDRE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|26399120|sp|P59150|RR4_TAKLE RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504727|emb|CAC80628.1| small ribosomal protein 4 [Takakia lepidozioides] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR G + K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRPGVSPGLTSKTLKSKSNYI---DRSTSNKKVSQYRVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH H Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N ++I SY + GD+I ++ K + + + + L ++ +P ++S + + + Sbjct: 117 ISMNNNIIDIPSYNREPGDIITIRNKLESRSMISKNINLFQKLKMPSHLSFDLTGLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMVNR---EWVNLKINELLVVEYYSR 200 >gi|293570759|ref|ZP_06681809.1| ribosomal protein S4 [Enterococcus faecium E980] gi|291609231|gb|EFF38503.1| ribosomal protein S4 [Enterococcus faecium E980] Length = 203 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSGTGKE-LARRPYAPGQHGPNSRGKQSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRNLFVKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G VI V++KS+ +V EA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYHVEVGQVISVREKSQNNVTVKEAVE-ATVGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P D YP + LVVE+Y Sbjct: 178 TRLPER--DELYP-EIDEALVVEYY 199 >gi|260779479|ref|ZP_05888369.1| SSU ribosomal protein S4p (S9e) [Vibrio coralliilyticus ATCC BAA-450] gi|260604288|gb|EEX30592.1| SSU ribosomal protein S4p (S9e) [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEQLIVELYSK 206 >gi|29422405|gb|AAO84598.1| small ribosomal protein 4 [Breutelia chrysocoma] Length = 200 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 2 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 118 NDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LDRESIGLKINELLVVEYYSR 198 >gi|163752126|ref|ZP_02159331.1| 30S ribosomal protein S4 [Shewanella benthica KT99] gi|161327961|gb|EDP99136.1| 30S ribosomal protein S4 [Shewanella benthica KT99] Length = 206 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLDT---APGQHG-ARKTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG VNI S++ DVI +++KSK+ A ++ A ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSIMVNGSVVNIPSFKVSASDVICIREKSKKQARIVAALEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 TKMEGAFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|309782859|ref|ZP_07677579.1| ribosomal protein S4 [Ralstonia sp. 5_7_47FAA] gi|308918283|gb|EFP63960.1| ribosomal protein S4 [Ralstonia sp. 5_7_47FAA] Length = 207 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKTGDVIAIREKSKKQVRIAESLTLAEQTGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +IP + +L+VE YSR Sbjct: 177 KKMEGTFKQIPDRAD---IAGDINESLIVELYSR 207 >gi|114804267|ref|YP_762263.1| ribosomal protein S4 [Morus indica] gi|122166803|sp|Q09X15|RR4_MORIN RecName: Full=30S ribosomal protein S4, chloroplastic gi|78100319|gb|ABB20960.1| ribosomal protein S4 [Morus indica] Length = 201 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKP----RAGSNLRNQLRPGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I VK + K + V + R ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIIRVKDEQKSKSLVQNYLDSSSREELPKHLTLHPFQYKGSV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---CVGLKINELLVVEYYSR 199 >gi|328541114|gb|AEB21781.1| ribosomal protein S4 [Acromastigum mooreanum] gi|328541116|gb|AEB21782.1| ribosomal protein S4 [Acromastigum sp. 'furcatifolium'] Length = 199 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ + SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTSKTLKSKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NKNIVDIPSYNCEPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDLIKLYGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + L+VE+YSR Sbjct: 176 --TINRESIDLKINELLIVEYYSR 197 >gi|294337176|emb|CAQ52738.1| ribosomal protein S4 [Hylocomiastrum pyrenaicum] Length = 202 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + ++ +PE+++ + Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITIKNQRKSETIISKNIDFYQKYKIPEHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|26399114|sp|P59147|RR4_LOPCO RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504357|emb|CAC81027.1| small ribosomal protein 4 [Lopidium concinnum] Length = 203 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G +S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNRSAPQLKPSSINQ--STSNKKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 59 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K K K + + + + ++ + +++ + Sbjct: 118 ILVNGYIVDIPSYRCKPQDFITIKNKQKSESIISKNIEFYQKSKIANHLTYSSLEKKGLV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 178 NQI---LDRESIGLKINELLVVEYYSR 201 >gi|222103440|gb|ACM44249.1| small ribosomal protein subunit 4 [Bryoxiphium norvegicum subsp. japonicum] Length = 198 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 DRIVNIPSYRCKPQDFITIKDRQKAQAIIIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIDLKINELLVVEYYSR 196 >gi|152112239|sp|Q04E66|RS4_OENOB RecName: Full=30S ribosomal protein S4 Length = 204 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 117/208 (56%), Gaps = 8/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ K ++ RR+G +L G K + R Y PG HG R+ K S + QLR KQK++ Sbjct: 1 MSRYTGPKWRLSRRLGISLSGSGKE-LARRPYAPGDHGNTGRRPKLSEYATQLREKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG +SE++F ++F +A + +G N LE+RLD++V+R T ARQ VNH Sbjct: 60 FTYG-LSERQFHNLFLKAGKIRKGLHGTNFFILLETRLDSVVFRLGLASTRPQARQLVNH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+LV+G+ V I SY K G +I V+++SK++ +L + + + + P ++ + D + Sbjct: 119 GHILVDGKRVTIPSYEVKPGQIISVRERSKKIVPILNSVEASLNNTP-FVEFDADKLEGK 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 178 LTRYPEREE---LGADINESLIVEYYNR 202 >gi|313158250|gb|EFR57652.1| ribosomal protein S4 [Alistipes sp. HGB5] Length = 202 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 114/207 (55%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M K K KI R+ GE ++G K + R++ PG HG R++ K S +G QL KQK K Sbjct: 1 MGKYIGPKSKIARKFGEAIYGADKV-LEKRNFPPGQHGLARKRKKVSEYGTQLSEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F + +A R G T NL+ LE RLD +VYR PT AARQ V+H Sbjct: 60 YTYG-LLEKQFARTYDQAARMGGITGENLLKLLECRLDNVVYRLGIAPTRAAARQLVSHC 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY + GDV+ V++KSK L + + + ++ ++ +M F Sbjct: 119 HICVNGNVVNIPSYSLRAGDVVSVREKSKSLEVISASLAGGSKSRYAWLEWDNASMSGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P + P ++ L+VE YS+ Sbjct: 179 LQKPEREE---IPENIKEQLIVELYSK 202 >gi|167756759|ref|ZP_02428886.1| hypothetical protein CLORAM_02306 [Clostridium ramosum DSM 1402] gi|167702934|gb|EDS17513.1| hypothetical protein CLORAM_02306 [Clostridium ramosum DSM 1402] Length = 216 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G + K +N R+Y PG HGQ+RK K + +GLQL KQK++ Sbjct: 16 MSRYTGPQWKLSRRLGFSTLENGKE-LNKRAYAPGQHGQKRK-KQTEYGLQLAEKQKVRH 73 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F + FK+A + G +N LE RLD +VYR F PT AARQ VNH H Sbjct: 74 MYG-VNEKQFHNTFKQAGKMEGIHGYNFFCLLERRLDNVVYRLGFAPTRRAARQLVNHGH 132 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG +I S+R K GDVIEVK+KSK LA + + + A P ++ V+ + Sbjct: 133 FLVNGIKTDIPSFRVKVGDVIEVKEKSKNLAIIKASLE-ARVHTPAFVEVDDTKLTGKLA 191 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +L+VE+Y+R Sbjct: 192 RLPERSE---LNQEINESLIVEYYNR 214 >gi|126454036|ref|YP_001068009.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106a] gi|167847640|ref|ZP_02473148.1| 30S ribosomal protein S4 [Burkholderia pseudomallei B7210] gi|242314939|ref|ZP_04813955.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106b] gi|171855208|sp|A3P088|RS4_BURP0 RecName: Full=30S ribosomal protein S4 gi|126227678|gb|ABN91218.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106a] gi|242138178|gb|EES24580.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 1106b] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ V VNG NI S + K GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAVTVNGIVANIPSQQVKAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|33866226|ref|NP_897785.1| 30S ribosomal protein S4 [Synechococcus sp. WH 8102] gi|41017824|sp|Q7U5K9|RS4_SYNPX RecName: Full=30S ribosomal protein S4 gi|33639201|emb|CAE08209.1| 30S ribosomal protein S4 [Synechococcus sp. WH 8102] Length = 202 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MARYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDV+ ++++ + +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVVAIRERKCSKQLAEGNLEFPGLANVPTHLELDKAKLSAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 TG---RCEREWVALEINELLVVEYYSR 200 >gi|73542839|ref|YP_297359.1| 30S ribosomal protein S4 [Ralstonia eutropha JMP134] gi|90101711|sp|Q46WG8|RS4_RALEJ RecName: Full=30S ribosomal protein S4 gi|72120252|gb|AAZ62515.1| SSU ribosomal protein S4P [Ralstonia eutropha JMP134] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGEKLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI ++++SK+ + EA LA + P +++V+ Sbjct: 117 QLVSHKAILVNGQTLNVPSAQIKSGDVITIREQSKKQVRIAEALSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPDRAD---ISGDINESLIVELYSR 207 >gi|157150371|ref|YP_001451346.1| 30S ribosomal protein S4 [Streptococcus gordonii str. Challis substr. CH1] gi|262283690|ref|ZP_06061455.1| ribosomal protein S4 [Streptococcus sp. 2_1_36FAA] gi|172045598|sp|A8AZY6|RS4_STRGC RecName: Full=30S ribosomal protein S4 gi|157075165|gb|ABV09848.1| ribosomal protein S4 [Streptococcus gordonii str. Challis substr. CH1] gi|262260747|gb|EEY79448.1| ribosomal protein S4 [Streptococcus sp. 2_1_36FAA] Length = 203 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|156618828|ref|YP_001430110.1| ribosomal protein S4 [Cuscuta reflexa] gi|171769780|sp|A7M968|RR4_CUSRE RecName: Full=Plastid 30S ribosomal protein S4 gi|156556013|emb|CAM98396.1| ribosomal protein S4 [Cuscuta reflexa] Length = 201 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P R L Q R K S++ ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPRTVR----DLRNQSRSGKKSHYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ S + A +++G T LI LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLISYVRIARKAKGSTGEVLIQLLEMRLDNILFRLGMAYTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K K K A + + + ++P +++++ Sbjct: 116 ILVNGHIVDIPSYRCKPRDIITSKDKPKSGALIKNSIKAFPREELPNHLTLHPAPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 NQIIDTK---WVGLKINELLVVEYYSR 199 >gi|294142909|ref|YP_003558887.1| 30S ribosomal protein S4 [Shewanella violacea DSS12] gi|293329378|dbj|BAJ04109.1| ribosomal protein S4 [Shewanella violacea DSS12] Length = 206 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---APGQHG-ARKTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG VNI S++ DVI +++KSK+ A + + ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSILVNGSVVNIPSFKVSASDVISIREKSKKQARISASLEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE YS+ Sbjct: 176 TKMEGAFKRLPER---SDLSAEINEQLIVELYSK 206 >gi|67035588|gb|AAY62725.1| small ribosomal protein subunit 4 [Trematodon longicollis] Length = 199 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---SNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +L+ +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKDQQKSQAMILKNVDFSQKSKVPNHLTFNSLEKKGVVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|294337256|emb|CAQ52777.1| ribosomal protein S4 [Pterobryopsis hoehnelii] Length = 202 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SY+CK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNSCIVDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|67035648|gb|AAY62755.1| small ribosomal protein subunit 4 [Venturiella sinensis] Length = 199 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGILPGLTHKTPQLKSNSI---NQSTSSKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ V+H+H+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVSHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K +L+ +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKDRQKSQVIILKNVDFSQKFKVPNHLTFNSLEKKGIVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESVGLKINELLVVEYYSR 197 >gi|67035560|gb|AAY62711.1| small ribosomal protein subunit 4 [Tristichium mirabile] Length = 199 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGILPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ + +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNVEFSQKSKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|15892391|ref|NP_360105.1| 30S ribosomal protein S4 [Rickettsia conorii str. Malish 7] gi|157828341|ref|YP_001494583.1| 30S ribosomal protein S4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933050|ref|YP_001649839.1| 30S ribosomal protein S4 [Rickettsia rickettsii str. Iowa] gi|229586609|ref|YP_002845110.1| 30S ribosomal protein S4 [Rickettsia africae ESF-5] gi|238651051|ref|YP_002916908.1| 30S ribosomal protein S4 [Rickettsia peacockii str. Rustic] gi|26399443|sp|Q92IF2|RS4_RICCN RecName: Full=30S ribosomal protein S4 gi|172045661|sp|A8F1B5|RS4_RICM5 RecName: Full=30S ribosomal protein S4 gi|172047812|sp|A8GRQ0|RS4_RICRS RecName: Full=30S ribosomal protein S4 gi|189045394|sp|B0BX57|RS4_RICRO RecName: Full=30S ribosomal protein S4 gi|259495290|sp|C3PN57|RS4_RICAE RecName: Full=30S ribosomal protein S4 gi|259495291|sp|C4K2Q9|RS4_RICPU RecName: Full=30S ribosomal protein S4 gi|15619541|gb|AAL03006.1| 30S ribosomal protein S4 [Rickettsia conorii str. Malish 7] gi|157800822|gb|ABV76075.1| 30S ribosomal protein S4 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908137|gb|ABY72433.1| SSU ribosomal protein S4P [Rickettsia rickettsii str. Iowa] gi|228021659|gb|ACP53367.1| 30S ribosomal protein S4 [Rickettsia africae ESF-5] gi|238625149|gb|ACR47855.1| 30S ribosomal protein S4 [Rickettsia peacockii str. Rustic] Length = 205 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R K GDVIEVK+ KQ+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQTTPGYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPA-LSDVPYPFEAEVHLVIELYSR 205 >gi|15642567|ref|NP_232200.1| 30S ribosomal protein S4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147675276|ref|YP_001218066.1| 30S ribosomal protein S4 [Vibrio cholerae O395] gi|153820465|ref|ZP_01973132.1| ribosomal protein S4 [Vibrio cholerae NCTC 8457] gi|227082689|ref|YP_002811240.1| ribosomal protein S4 [Vibrio cholerae M66-2] gi|229507376|ref|ZP_04396881.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae BX 330286] gi|229509700|ref|ZP_04399181.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae B33] gi|229513495|ref|ZP_04402959.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TMA 21] gi|229516825|ref|ZP_04406271.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae RC9] gi|229521638|ref|ZP_04411056.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TM 11079-80] gi|229527498|ref|ZP_04416890.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 12129(1)] gi|229606882|ref|YP_002877530.1| 30S ribosomal protein S4 [Vibrio cholerae MJ-1236] gi|254292241|ref|ZP_04963004.1| ribosomal protein S4 [Vibrio cholerae AM-19226] gi|254851112|ref|ZP_05240462.1| ribosomal protein S4 [Vibrio cholerae MO10] gi|255744459|ref|ZP_05418411.1| SSU ribosomal protein S4p (S9e) [Vibrio cholera CIRS 101] gi|297581414|ref|ZP_06943337.1| ribosomal protein S4 [Vibrio cholerae RC385] gi|26399513|sp|Q9KP07|RS4_VIBCH RecName: Full=30S ribosomal protein S4 gi|172047566|sp|A5F573|RS4_VIBC3 RecName: Full=30S ribosomal protein S4 gi|254764621|sp|C3LRN4|RS4_VIBCM RecName: Full=30S ribosomal protein S4 gi|9657158|gb|AAF95713.1| ribosomal protein S4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126508992|gb|EAZ71586.1| ribosomal protein S4 [Vibrio cholerae NCTC 8457] gi|146317159|gb|ABQ21698.1| ribosomal protein S4 [Vibrio cholerae O395] gi|150421843|gb|EDN13827.1| ribosomal protein S4 [Vibrio cholerae AM-19226] gi|227010577|gb|ACP06789.1| ribosomal protein S4 [Vibrio cholerae M66-2] gi|227014461|gb|ACP10671.1| ribosomal protein S4 [Vibrio cholerae O395] gi|229335130|gb|EEO00615.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae 12129(1)] gi|229341232|gb|EEO06236.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TM 11079-80] gi|229345888|gb|EEO10860.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae RC9] gi|229349372|gb|EEO14328.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae TMA 21] gi|229353174|gb|EEO18113.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae B33] gi|229354881|gb|EEO19802.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae BX 330286] gi|229369537|gb|ACQ59960.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae MJ-1236] gi|254846817|gb|EET25231.1| ribosomal protein S4 [Vibrio cholerae MO10] gi|255737984|gb|EET93377.1| SSU ribosomal protein S4p (S9e) [Vibrio cholera CIRS 101] gi|297534252|gb|EFH73090.1| ribosomal protein S4 [Vibrio cholerae RC385] gi|327485054|gb|AEA79461.1| SSU ribosomal protein S4p (S9e) [Vibrio cholerae LMA3894-4] Length = 206 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++A +R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEQLIVELYSK 206 >gi|241664507|ref|YP_002982867.1| 30S ribosomal protein S4 [Ralstonia pickettii 12D] gi|240866534|gb|ACS64195.1| ribosomal protein S4 [Ralstonia pickettii 12D] Length = 207 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKTGDVIAIREKSKKQVRIAESLTLAEQTGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF ++P + +L+VE YSR Sbjct: 177 KKMEGTFKQVPDRAD---IAGDINESLIVELYSR 207 >gi|6002089|emb|CAA58954.1| ribosomal protein S4 [Typha angustifolia] Length = 196 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + + A ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDNQKSKGLIQNSIASAAHEELPKHLTIDSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|28378911|ref|NP_785803.1| 30S ribosomal protein S4 [Lactobacillus plantarum WCFS1] gi|254557116|ref|YP_003063533.1| 30S ribosomal protein S4 [Lactobacillus plantarum JDM1] gi|300769694|ref|ZP_07079577.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181113|ref|YP_003925241.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258326|sp|Q88UX0|RS4_LACPL RecName: Full=30S ribosomal protein S4 gi|28271748|emb|CAD64654.1| ribosomal protein S4 [Lactobacillus plantarum WCFS1] gi|254046043|gb|ACT62836.1| 30S ribosomal protein S4 [Lactobacillus plantarum JDM1] gi|300492737|gb|EFK27922.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046604|gb|ADN99147.1| 30S ribosomal protein S4 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 202 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L G K + R Y PG HGQ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWKISRRLGMSLSGTGKE-LARRPYAPGDHGQGRRGKLSEYGTQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFANLFIKAGKIREGKHGVNFMILLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G V+ V++KSK+LA + A + A P ++ + D + + Sbjct: 119 HITVDGKRVDIPSYEVSVGQVVSVREKSKKLAVITGAVE-AVVARPNFVQFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +L+VE+Y++ Sbjct: 178 TRLPEREE---LEADIDESLIVEYYNK 201 >gi|217967395|ref|YP_002352901.1| ribosomal protein S4 [Dictyoglomus turgidum DSM 6724] gi|226732179|sp|B8E1F9|RS4_DICTD RecName: Full=30S ribosomal protein S4 gi|217336494|gb|ACK42287.1| ribosomal protein S4 [Dictyoglomus turgidum DSM 6724] Length = 206 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K P R + PG HG+ ++ K + +GL+LR Sbjct: 1 MARYTGPDCRLCRREGMKLFLKGTKCFSEKCPFERRPFPPGQHGRAQR-KLTEYGLRLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ+ K+ YG + E++FR F+ A + RG T L+ LE+RLD +VYR + + ARQ Sbjct: 60 KQRAKRIYG-VLERQFRRYFEIASKGRGVTGERLLQLLETRLDNVVYRLGWALSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H + VNG+ VNI SY K GDV+E+ K L V EA + VP ++ ++ + Sbjct: 119 IVSHGKIAVNGKRVNIPSYNLKPGDVVELLDK--DLIPVQEAISVFGNKSVPAWLELDRE 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ +R+P K +Q L+VEFYSR Sbjct: 177 NLRGKVLRLP---KREEIDTPVQEQLIVEFYSR 206 >gi|116333868|ref|YP_795395.1| 30S ribosomal protein S4 [Lactobacillus brevis ATCC 367] gi|122269445|sp|Q03R08|RS4_LACBA RecName: Full=30S ribosomal protein S4 gi|116099215|gb|ABJ64364.1| SSU ribosomal protein S4P [Lactobacillus brevis ATCC 367] Length = 201 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K +N R Y PG HGQ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRISRRLGVSLSGTGKE-LNRRPYAPGDHGQGRRQKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++FK A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 TYG-MTERQFYNLFKRAGKIKEGTHGTNFMILLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI V++KSK +A + A + A P+Y+ + D + + Sbjct: 119 HITVDGQRVDIPSYEVKIGQVISVREKSKDMAIIKGAVE-AVVGRPQYVEFDADKLAGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + +L+VE+Y+R Sbjct: 178 TRFPQREE---LDAELDDSLIVEYYNR 201 >gi|224370666|ref|YP_002604830.1| RpsD [Desulfobacterium autotrophicum HRM2] gi|259495274|sp|C0Q9U8|RS4_DESAH RecName: Full=30S ribosomal protein S4 gi|223693383|gb|ACN16666.1| RpsD [Desulfobacterium autotrophicum HRM2] Length = 208 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ S + RR L+ + K + RSY PG HGQRR K S +G+QLR Sbjct: 1 MSRYRGSVCRQCRRENMKLFLKGDRCFSDKCSFDRRSYPPGQHGQRR-MKHSDYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FR IFK+AD +G T L+S LE RLD +V+R F + R Sbjct: 60 KQKVRRIYG-IGEKQFRIIFKKADSLKGITGETLLSLLERRLDNVVFRLGFTSSRTQGRH 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 FV H H VNG+ VNI SY K GDV+E+K+KSK++ ++ ++ + R VP+++ ++ D Sbjct: 119 FVRHNHFTVNGKKVNIPSYIIKAGDVVELKEKSKKVQAITDSLDTVVRRGVPQWLELDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +D+ P +Q L+VE YS+ Sbjct: 179 GFKGVVKGMPAR-EDITLP--IQEQLIVELYSK 208 >gi|222103446|gb|ACM44252.1| small ribosomal protein subunit 4 [Pleurozium schreberi] Length = 202 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGILPGLTNKTPQLK---ASSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L LE RLD +++R PTI ARQ VNH H Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRLGMAPTIPGARQLVNHTH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIIGKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|24380465|ref|NP_722420.1| 30S ribosomal protein S4 [Streptococcus mutans UA159] gi|290581395|ref|YP_003485787.1| 30S ribosomal protein S4 [Streptococcus mutans NN2025] gi|26399366|sp|P59133|RS4_STRMU RecName: Full=30S ribosomal protein S4 gi|24378494|gb|AAN59726.1|AE015034_7 30S ribosomal protein S4 [Streptococcus mutans UA159] gi|254998294|dbj|BAH88895.1| 30S ribosomal protein S4 [Streptococcus mutans NN2025] Length = 203 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKKSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G +N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKGGILGYNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + + P ++S + D + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSAKVPAILEAVE-SVVGRPAFVSFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|317046175|ref|YP_004072464.1| ribosomal protein S4 [Corynocarpus laevigata] gi|309252892|gb|ADO60312.1| ribosomal protein S4 [Corynocarpus laevigata] Length = 201 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----RTGSDLKNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTISQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K + + A + + ++P+ ++++ Sbjct: 116 ILVNGCIVDIPSYRCKPRDIITAKDEQRSRALIQNYLDSSPHEELPKDLTLHPVQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---SVGLKINELLVVEYYSR 199 >gi|258625764|ref|ZP_05720643.1| 30S ribosomal protein S4 [Vibrio mimicus VM603] gi|261211127|ref|ZP_05925416.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC341] gi|262170491|ref|ZP_06038169.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus MB-451] gi|262401859|ref|ZP_06078424.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC586] gi|258582002|gb|EEW06872.1| 30S ribosomal protein S4 [Vibrio mimicus VM603] gi|260839628|gb|EEX66239.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC341] gi|261891567|gb|EEY37553.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus MB-451] gi|262351831|gb|EEZ00962.1| SSU ribosomal protein S4p (S9e) [Vibrio sp. RC586] Length = 206 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ +++K+K+ + + A ++A +R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEQLIVELYSK 206 >gi|166092884|gb|ABY82400.1| ribosomal protein S4 [Eudianthe laeta] Length = 201 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLXMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I K + K + + L+ ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPQDTIXAKDEQKSRTLIQKCIDLSPPEELPKHLTLDPFPYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|228016028|gb|ACP50867.1| ribosomal protein S4 [Pinus resinosa] Length = 201 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|54778757|gb|AAV39591.1| ribosomal protein S4 [synthetic construct] Length = 233 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 124/213 (58%), Gaps = 16/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + K + PG HG RK + S +G+QLR Sbjct: 26 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLRE 81 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ Sbjct: 82 KQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 140 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 141 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 200 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 201 KMEGTFKRKPER---SDLSADINEHLIVELYSK 230 >gi|26399108|sp|P59144|RR4_HYPFI RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504359|emb|CAC81023.1| small ribosomal protein 4 [Hypopterygium filiculaeforme] Length = 202 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTPQLKSNLI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITIKNQRKSESIINKNINFYQKYKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKVNELLVVEYYSR 200 >gi|222103524|gb|ACM44291.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 203 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 121 NDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRDSIDLKINELLVVEYYSR 201 >gi|139387442|ref|YP_001122796.1| ribosomal protein S4 [Phaseolus vulgaris] gi|152060557|sp|A4GG95|RR4_PHAVU RecName: Full=30S ribosomal protein S4, chloroplastic gi|112030964|gb|ABH88076.1| ribosomal protein S4 [Phaseolus vulgaris] gi|158187159|gb|ABW22792.1| ribosomal protein S4 [Phaseolus vulgaris] Length = 201 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G K P L Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPCFKKIRRLGYLPGLTSKKPTVKNE----LRNQLRFSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + +++G T L+ LE RLD I++R TI ARQF+NHRH Sbjct: 57 HYG-LTERQLLKYVRISGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQFINHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K + K + A R +P +++V+ Sbjct: 116 VLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIQNYLDSAPRDKLPNHLTVHPFQYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 NQIIDNK---WVGLKINELLVVEYYSR 199 >gi|67035686|gb|AAY62774.1| small ribosomal protein subunit 4 [Microcampylopus leucogaster] Length = 199 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRHVLV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHVLV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + + + + +++ VP +++ N +I Sbjct: 117 NNYIVNIPSYRCKPQDFITIKNRQKSQSIIAKNLEFSQKYKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LTHESIGLNINELLVVEYYSR 197 >gi|294337084|emb|CAQ52692.1| ribosomal protein S4 [Bryolawtonia vancouveriensis] Length = 202 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ N Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|222103468|gb|ACM44263.1| small ribosomal protein subunit 4 [Drummondia sinensis] Length = 202 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 4 YRGPRVRIIRRLGALPGLTSKTPQLKSSST---NQSTSNKKISQYRIRLEEKQKLRFHYG 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 61 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 119 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 120 NDCIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFSQKYKVPNHLTFNSLQKKGLVNQI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 ---LDRESIDLKINELLVVEYYSR 200 >gi|328541150|gb|AEB21799.1| ribosomal protein S4 [Lepidozia ulothrix] Length = 200 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR--KSKPSYFGLQLRAKQKMKKY 61 + K+ RR+G K+ + H R K S + ++L KQK++ + Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTLKPKSN-----HNDRSASNKKVSQYRIRLEEKQKLRFH 55 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ Sbjct: 56 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHI 114 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 +N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + Sbjct: 115 SINNNIVDIPSYNCEPGDIITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSIN 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 175 Q---TINREWINLKINELLVVEYYSR 197 >gi|261405769|ref|YP_003242010.1| 30S ribosomal protein S4 [Paenibacillus sp. Y412MC10] gi|329922609|ref|ZP_08278161.1| ribosomal protein S4 [Paenibacillus sp. HGF5] gi|261282232|gb|ACX64203.1| ribosomal protein S4 [Paenibacillus sp. Y412MC10] gi|328941951|gb|EGG38234.1| ribosomal protein S4 [Paenibacillus sp. HGF5] Length = 200 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K + R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKE-LAKRPFPPGQHGPNQRRKVSNYGMQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A +G N + LESRLD +VYR F + ARQ V H H Sbjct: 60 MYG-LGEKQFRTLFNKATSMKGIAGENFMFLLESRLDNLVYRLGFSNSRAGARQLVAHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY GDVI ++++S+ L+S+ EA +P Y+ + M ++ Sbjct: 119 VTVNGKKVDIASYAVSTGDVIGLRERSRSLSSIKEALA-NRVHLPAYLEFDEAAMEGKYI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFY+R Sbjct: 178 RLPERSE---LSQDIDEKQIVEFYNR 200 >gi|134294468|ref|YP_001118203.1| 30S ribosomal protein S4 [Burkholderia vietnamiensis G4] gi|134137625|gb|ABO53368.1| SSU ribosomal protein S4P [Burkholderia vietnamiensis G4] Length = 213 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 125/213 (58%), Gaps = 15/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 8 ARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLRE 64 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ Sbjct: 65 KQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQ 123 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V+H+ + VNG N+ S + K GDVI +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 124 LVSHKSITVNGVVANVPSQQVKAGDVIAIREKAKKQARIIEALSLAEQGGMPSWVAVDAK 183 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 184 KFEGTFKQMPERAD---IAGDINESLIVELYSR 213 >gi|290487070|gb|ADD29919.1| ribosomal protein S4 [Lonicera japonica] Length = 197 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 17/209 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P+ GQ R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTKKGPI----------GQSRSVKKSQYRIRLEEKQKLRF 50 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 51 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 109 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA---ERDVPEYISVNHDNMVA 177 +LVNGR V+I SYRCK D+I + + A + + + + +P+++++ Sbjct: 110 ILVNGRIVDIPSYRCKPRDIITARDEQNSRALIQNSLNSSPHKKNKLPKHLTLQPFQYKG 169 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 170 LVNQIIDSK---WVGLKINELLVVEYYSR 195 >gi|237734477|ref|ZP_04564958.1| 30S ribosomal protein S4 [Mollicutes bacterium D7] gi|229382297|gb|EEO32388.1| 30S ribosomal protein S4 [Coprobacillus sp. D7] Length = 201 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G + K +N R+Y PG HGQ+RK K + +GLQL KQK++ Sbjct: 1 MSRYTGPQWKLSRRLGFSTLENGKE-LNKRAYAPGQHGQKRK-KQTEYGLQLAEKQKVRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+F + FK+A + G +N LE RLD +VYR F PT AARQ VNH H Sbjct: 59 MYG-VNEKQFHNTFKQAGKMEGIHGYNFFCLLERRLDNVVYRLGFAPTRRAARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 LVNG +I S+R K GDVIEVK+KSK LA + + + A P ++ V+ + Sbjct: 118 FLVNGIKTDIPSFRVKVGDVIEVKEKSKNLAIIKASLE-ARVHTPAFVEVDDTKLTGKLA 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +L+VE+Y+R Sbjct: 177 RLPERSE---LNQEINESLIVEYYNR 199 >gi|67035614|gb|AAY62738.1| small ribosomal protein subunit 4 [Bryowijkia ambigua] Length = 199 Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYIRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + +++ VP +++ N +I Sbjct: 117 NNRIVSIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKYKVPNHLTFNFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|89093591|ref|ZP_01166539.1| 30S ribosomal protein S4 [Oceanospirillum sp. MED92] gi|89082281|gb|EAR61505.1| 30S ribosomal protein S4 [Oceanospirillum sp. MED92] Length = 206 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++++ PG+HG R+ + S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVRALDSKCKAETVPGVHG-ARRGRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FRS +KEA R G T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLERQFRSYYKEAARRSGATGENLLQLLEGRLDNVVYRMGFGSTRAEARQIV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +HR + VNG+ VNI SY+ K GDV+ V++K+K + A +LA +R E++ V+ M Sbjct: 119 SHRSITVNGQVVNIASYQVKAGDVVAVREKAKTQLRIKNALELAGQRAAVEWVEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ P + L+VE YS+ Sbjct: 179 EGTYKATPER---SDLSADINEQLIVELYSK 206 >gi|146308899|ref|YP_001189364.1| 30S ribosomal protein S4 [Pseudomonas mendocina ymp] gi|172046040|sp|A4XZ66|RS4_PSEMY RecName: Full=30S ribosomal protein S4 gi|145577100|gb|ABP86632.1| SSU ribosomal protein S4P [Pseudomonas mendocina ymp] Length = 206 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +K+A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VN+ SY+ K GDV+ V++KSK + +A +L A+R E++ V+ + Sbjct: 119 SHKAISVNGQTVNVPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDAEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPARGD---LSADINESLIVELYSK 206 >gi|227535269|ref|ZP_03965318.1| ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187153|gb|EEI67220.1| ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 239 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 37 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 95 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 96 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 154 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI ++++S+ LA V EA + P Y++ + + Sbjct: 155 HITVDGKRVDIPSYEVEPGQVIALRERSQNLAIVNEAIENTVSR-PAYVTFDDTKKTGSL 213 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + P + +LVVE+Y Sbjct: 214 VRLPERGELEP---EVDESLVVEYY 235 >gi|46811050|gb|AAT01843.1| small ribosomal protein 4 [Scapania nemorea] Length = 197 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+LVN Sbjct: 57 TERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + Sbjct: 117 DTVDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSVNQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TVNRECINLKINELLVVEYYSR 195 >gi|3098146|gb|AAC15521.1| small ribosomal protein 4 [Funaria hygrometrica] Length = 190 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 9/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGVLPGLTNKTPQLKSSSP----NQSAAKKISQYRIRLEEKQKLRFHYG-ITERQLL 55 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I Sbjct: 56 NYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIP 115 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 SYRCKPEDSITVKNRQKSQAIITKNIDFSQKAKVPNHLTFDSTQKKGLVNQI---LDRES 172 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 IGLKINELLVVEYYSR 188 >gi|254881348|ref|ZP_05254058.1| 30S ribosomal protein S4 [Bacteroides sp. 4_3_47FAA] gi|319640349|ref|ZP_07995074.1| hypothetical protein HMPREF9011_00671 [Bacteroides sp. 3_1_40A] gi|254834141|gb|EET14450.1| 30S ribosomal protein S4 [Bacteroides sp. 4_3_47FAA] gi|317388124|gb|EFV68978.1| hypothetical protein HMPREF9011_00671 [Bacteroides sp. 3_1_40A] Length = 201 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A + G T L+ LE+RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASANGITGEILLQSLEARLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G ++ V+++SK L + + ++ + + V + Sbjct: 119 ITVDGKVVNIPSFSVKPGQIVGVRERSKSLEVIANSLAGFNHSKYPWLEWDETSKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|222103432|gb|ACM44245.1| small ribosomal protein subunit 4 [Polytrichum sphaerothecium] Length = 203 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P Y + K S + ++L KQK++ +Y Sbjct: 4 RFRGPRVRIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+L Sbjct: 61 G-ITERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN VNI SYRCK D I +K + + + +++ +P +++ N + Sbjct: 120 VNDCIVNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LDRESISLKINELLVVEYYSR 201 >gi|149390270|ref|YP_001294100.1| ribosomal protein S4 [Chloranthus spicatus] gi|172048687|sp|A6MMC4|RR4_CHLSC RecName: Full=30S ribosomal protein S4, chloroplastic gi|146744190|gb|ABQ43262.1| ribosomal protein S4 [Chloranthus spicatus] Length = 201 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLRNQSRFGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D+I + + + + + ++P++++++ Sbjct: 116 ILVNSRIVDIPSYRCKPRDIITTRDEQRSRTLIQNHIDSSPHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---SIGLKINELLVVEYYSR 199 >gi|322387048|ref|ZP_08060660.1| 30S ribosomal protein S4 [Streptococcus infantis ATCC 700779] gi|321142132|gb|EFX37625.1| 30S ribosomal protein S4 [Streptococcus infantis ATCC 700779] Length = 203 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 178 TRLPERDE---INPEINEALIVEFYNK 201 >gi|300309481|ref|YP_003773573.1| 30S ribosomal protein S4 [Herbaspirillum seropedicae SmR1] gi|300072266|gb|ADJ61665.1| 30S ribosomal subunit S4 protein [Herbaspirillum seropedicae SmR1] Length = 207 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNH 172 Q V+H+ + VNG+ VNI SY K GDVI V++K+K+ + EA LAE + P+++SV+ Sbjct: 117 QLVSHKALTVNGQVVNIASYSVKAGDVIAVREKAKKQVRIAEALSLAESNGFPQWVSVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P + + +L+VE YSR Sbjct: 177 KKLEGTFKSSPDRSE---IAADVNESLIVELYSR 207 >gi|148238927|ref|YP_001224314.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7803] gi|172047783|sp|A5GJA2|RS4_SYNPW RecName: Full=30S ribosomal protein S4 gi|147847466|emb|CAK23017.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7803] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ + +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKQLAEGNLEFPGLANVPPHLELDKPKLNAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 177 VG---RCEREWVALEINELLVVEYYSR 200 >gi|126656084|ref|ZP_01727468.1| 30S ribosomal protein S4 [Cyanothece sp. CCY0110] gi|126622364|gb|EAZ93070.1| 30S ribosomal protein S4 [Cyanothece sp. CCY0110] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQGRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A RS T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V+VNGR VNI SY+C+ GDVI V+ K V Q ++PE++ + + + Sbjct: 117 VMVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLANLPEHLEFDKNTLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +K + + LVVE+YSR Sbjct: 177 NNV---IKREWVALQINELLVVEYYSR 200 >gi|124025174|ref|YP_001014290.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. NATL1A] gi|152112245|sp|A2C0L5|RS4_PROM1 RecName: Full=30S ribosomal protein S4 gi|123960242|gb|ABM75025.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. NATL1A] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RS+ PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSHPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG+ +I SY+CK GDVI ++ + +VP ++ ++ + A Sbjct: 117 VTVNGKITDIASYQCKAGDVIAIRDNKASKQLAQANLEFPGLANVPPHLELDKTKLSAKI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 T---AKTDREWVAIEINELLVVEYYSR 200 >gi|94500968|ref|ZP_01307493.1| ribosomal protein S4 [Oceanobacter sp. RED65] gi|94426908|gb|EAT11891.1| ribosomal protein S4 [Oceanobacter sp. RED65] Length = 206 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K V T+ PG+HG R + S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALDSKCKVETK---PGVHGAGR-GRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FRS +KEA R +G T NL+ LE+RLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLEKQFRSYYKEAARVKGATGENLLKLLETRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ + VNG++VNI SY K GDV+ +++K+K+ + A +L A+R +I V+ Sbjct: 116 QLVSHKAIAVNGQTVNIPSYNIKAGDVVSIREKAKEQLRIKGALELAAQRGDIAWIDVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF +P + + L+VE YS+ Sbjct: 176 KKMEGTFKAVPERSE---LSAEINEQLIVELYSK 206 >gi|77862527|gb|ABB04536.1| small ribosomal protein 4 [Dumortiera hirsuta] Length = 201 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMTSTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N +V+I SY CK DVI +K +SK + + + ++ +P +++ + + Sbjct: 117 LINNNTVDIPSYNCKPKDVITIKDRSKSQSIITKNLNSFQKQKIPNHLAFDLMQIKGIVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWISLKINELLVVEYYSR 199 >gi|241895757|ref|ZP_04783053.1| ribosomal protein S4 [Weissella paramesenteroides ATCC 33313] gi|241870800|gb|EER74551.1| ribosomal protein S4 [Weissella paramesenteroides ATCC 33313] Length = 203 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+++ RR+G +L G K + R+Y PG HG R+SKPS +G+QL KQK++ Sbjct: 1 MSRYTGPKYRLSRRLGVSLSGTGKE-LARRNYAPGDHGAGRRSKPSDYGIQLAEKQKVRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F +A + +G N +S LE RLD IVYR T ARQ VNH Sbjct: 60 TYG-MTERQFHNLFLKAGKIRKGTHGDNFMSLLERRLDNIVYRLGLASTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G I V++KS++ + A + +P ++ + D + T Sbjct: 119 HILVDGKRVDIPSYEVSVGQEISVREKSQKNVYIQAAVEAQAGTLP-FVEFDKDTLKGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + L+VE+Y+R Sbjct: 178 VREPERAE---LDHEYNEALIVEYYNR 201 >gi|26399168|sp|Q9FSA4|RR4_SPHDO RecName: Full=30S ribosomal protein S4, chloroplastic gi|10933877|emb|CAC14065.1| small ribosomal protein 4 [Sphaerocarpos donnellii] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A R++G T L+ E RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARRAKGSTGEVLLQLSEMRLDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 116 HILVNDYIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKSKIPNHLTYSSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|148270449|ref|YP_001244909.1| 30S ribosomal protein S4 [Thermotoga petrophila RKU-1] gi|170289156|ref|YP_001739394.1| RNA-binding S4 domain-containing protein [Thermotoga sp. RQ2] gi|281412756|ref|YP_003346835.1| ribosomal protein S4 [Thermotoga naphthophila RKU-10] gi|172047881|sp|A5IMB0|RS4_THEP1 RecName: Full=30S ribosomal protein S4 gi|226695093|sp|B1LBL3|RS4_THESQ RecName: Full=30S ribosomal protein S4 gi|147735993|gb|ABQ47333.1| SSU ribosomal protein S4P [Thermotoga petrophila RKU-1] gi|170176659|gb|ACB09711.1| RNA-binding S4 domain protein [Thermotoga sp. RQ2] gi|281373859|gb|ADA67421.1| ribosomal protein S4 [Thermotoga naphthophila RKU-10] Length = 209 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 91/213 (42%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + R Y PG HGQRR +K + +G+QLRA Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTDKCAFDRRPYAPGQHGQRR-AKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG I E++F ++A + GDT NLI LE+RLD +VYR F ARQ Sbjct: 60 KQTVKRIYG-ILERQFERYVEKAMQKAGDTRENLIQILEARLDNVVYRMGFAINRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH H LVNG+ VNI SY K DV+E+++KS+ L + +A + ER V +I V++D Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLKPNDVVELREKSRDLEVIKKAVEANKERSVVPWIEVDYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N TF+R PS + PV +Q V+EFYSR Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDLQT--VIEFYSR 209 >gi|283853178|ref|ZP_06370431.1| ribosomal protein S4 [Desulfovibrio sp. FW1012B] gi|283571436|gb|EFC19443.1| ribosomal protein S4 [Desulfovibrio sp. FW1012B] Length = 208 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K +I RR G L+ + K R Y PG HG+ RK K S + + LR Sbjct: 1 MARYTEAKCRICRREGGKLFLKGDRCYTDKCAYERRPYAPGQHGRIRK-KMSDYAVMLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F+ AD +G T NL+SFLE R+D +VYR F + ARQ Sbjct: 60 KQKTRRMYG-ILEGQFRAYFQRADMKKGVTGENLLSFLERRMDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H ++NG V I S + K GDVIEV++K++Q +LEA Q +A R P ++ V+ + Sbjct: 119 LVRHGLFVLNGHRVTIPSLQVKVGDVIEVREKNRQSPIILEAQQVIARRGCPAWLEVDGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +DV +P + L+VE YS+ Sbjct: 179 KLKGKVNALPTR-EDVQFP--INEQLIVELYSK 208 >gi|254362773|ref|ZP_04978855.1| ribosomal protein S4 [Mannheimia haemolytica PHL213] gi|261492716|ref|ZP_05989264.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495669|ref|ZP_05992115.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094402|gb|EDN75251.1| ribosomal protein S4 [Mannheimia haemolytica PHL213] gi|261308776|gb|EEY10033.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311569|gb|EEY12724.1| ribosomal protein S4 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 208 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K K+ RR G +L+ + N PG HG RK + S +G QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKVRRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ ++VNGR VNI S++ DV+ V++KSK+ A + + +LA +R+ P ++ V+ Sbjct: 119 LVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDAT 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + +L+VE YS+ Sbjct: 179 KMEGVFKRRPER---SDLSADINEHLIVELYSK 208 >gi|3098186|gb|AAC15541.1| small ribosomal protein 4 [Mnium hornum] Length = 199 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 NDHLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|26399116|sp|P59148|RR4_LOPST RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504355|emb|CAC81022.1| small ribosomal protein 4 [Lopidium struthiopteris] Length = 203 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G KS + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKSAPQLKPSSINQ--STSNKKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 59 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K K K + + + +L ++ + +++ + Sbjct: 118 ILVNGYIVDIPSYRCKPQDFITIKNKQKYESIISKNIELYQKSKIANHLTYSSLEKKGLV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 178 NQI---LDRESIGLKINELLVVEYYSR 201 >gi|328541170|gb|AEB21809.1| ribosomal protein S4 [Telaranea plumulosa] Length = 199 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTVKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCESGDLITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSIDQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWVNLKINELLVVEYYSR 197 >gi|157689430|gb|ABV65271.1| ribosomal protein S4 [Bulnesia arborea] Length = 200 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 8/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPKAKTIT----RNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ +E RLD I++R TI ARQFVNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKTKGSTGQVLLQLIEMRLDNILFRLGMASTIPQARQFVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVN VNI SYRCK D+I V+ K V +++ +++++ Sbjct: 116 ILVNDHIVNIPSYRCKPRDIITVRDNQKSRTLVQNYLDSPNQELAKHLTLQPFQYKGLVN 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 QIIDSK---WVGLRINELLVVEYYSR 198 >gi|289209305|ref|YP_003461371.1| ribosomal protein S4 [Thioalkalivibrio sp. K90mix] gi|288944936|gb|ADC72635.1| ribosomal protein S4 [Thioalkalivibrio sp. K90mix] Length = 206 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + ++ + T+ PG HG R+++ S + +QLR KQ Sbjct: 1 MARYIGPKCKLSRREGVDLGLKSRARALETKCKLDKAPGQHG-ERRTRLSDYAVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A + +G T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KLRRIYG-VLEKQFRNYYKKAAQRKGSTGENLLKLLEGRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +HR VLVNG+ VNI +Y+ + DV+ +++K+++ + ++ LA + P ++ V+ Sbjct: 119 SHRAVLVNGQVVNIAAYQVQPSDVVSIREKARKQVRIQDSMTLAEQSGFPSWVEVDTSKF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF IP P + +LVVE YS+ Sbjct: 179 EGTFKAIPDR---SDLPADINESLVVELYSK 206 >gi|15644222|ref|NP_229273.1| 30S ribosomal protein S4 [Thermotoga maritima MSB8] gi|7388196|sp|Q9X1I3|RS4_THEMA RecName: Full=30S ribosomal protein S4 gi|4982039|gb|AAD36541.1|AE001798_6 ribosomal protein S4 [Thermotoga maritima MSB8] Length = 209 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K + R Y PG HGQRR +K + +G+QLRA Sbjct: 1 MARYTGPLCKLCRREGMKLYLKGERCYTDKCAFDRRPYAPGQHGQRR-TKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG I E++F ++A + GDT NLI LE+RLD +VYR F ARQ Sbjct: 60 KQTVKRIYG-ILERQFERYVEKAMQKAGDTRENLIQILEARLDNVVYRMGFAINRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH H LVNG+ VNI SY + DV+EV++KS+ L + +A + ER + +I V++D Sbjct: 119 LVNHGHFLVNGKKVNIPSYLLRPNDVVEVREKSRDLEVIKKAIEANKERSIVPWIEVDYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N TF+R PS + PV +Q V+EFYSR Sbjct: 179 NYRGTFLRYPSLEEVTDLPVDLQT--VIEFYSR 209 >gi|116618921|ref|YP_819292.1| SSU ribosomal protein S4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270879|sp|Q03V53|RS4_LEUMM RecName: Full=30S ribosomal protein S4 gi|116097768|gb|ABJ62919.1| SSU ribosomal protein S4P [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 203 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 123/205 (60%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F +A + +G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFKALFNKAGKIRKGTHGTNFMISLEQRLDSVVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G V+ V++KSK + + A + P+++S++ + + + Sbjct: 119 HILVDGKRVDIPSYSVQPGQVVSVREKSKNILPIQAAIESVVAR-PQFVSLDTEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + + L+VE+Y Sbjct: 178 VRLPEREE---LDADINEALIVEYY 199 >gi|150003363|ref|YP_001298107.1| 30S ribosomal protein S4 [Bacteroides vulgatus ATCC 8482] gi|212695280|ref|ZP_03303408.1| hypothetical protein BACDOR_04820 [Bacteroides dorei DSM 17855] gi|237711700|ref|ZP_04542181.1| 30S ribosomal protein S4 [Bacteroides sp. 9_1_42FAA] gi|237725859|ref|ZP_04556340.1| 30S ribosomal protein S4 [Bacteroides sp. D4] gi|265753119|ref|ZP_06088688.1| 30S ribosomal protein S4 [Bacteroides sp. 3_1_33FAA] gi|294777845|ref|ZP_06743289.1| ribosomal protein S4 [Bacteroides vulgatus PC510] gi|172048640|sp|A6KYH1|RS4_BACV8 RecName: Full=30S ribosomal protein S4 gi|149931787|gb|ABR38485.1| 30S ribosomal protein S4 [Bacteroides vulgatus ATCC 8482] gi|212662190|gb|EEB22764.1| hypothetical protein BACDOR_04820 [Bacteroides dorei DSM 17855] gi|229435667|gb|EEO45744.1| 30S ribosomal protein S4 [Bacteroides dorei 5_1_36/D4] gi|229454395|gb|EEO60116.1| 30S ribosomal protein S4 [Bacteroides sp. 9_1_42FAA] gi|263236305|gb|EEZ21800.1| 30S ribosomal protein S4 [Bacteroides sp. 3_1_33FAA] gi|294448299|gb|EFG16855.1| ribosomal protein S4 [Bacteroides vulgatus PC510] Length = 201 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I R+ GE ++G K ++ ++Y PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYTGPKSRIARKFGEGIFGADKV-LSKKNYPPGQHGNNRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A + G T L+ LE+RLD +V+R PT AARQ V+H+H Sbjct: 60 TYG-VLEKQFRNLFEKAASANGITGEILLQSLEARLDNVVFRLGIAPTRAAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ VNI S+ K G ++ V+++SK L + + ++ + + V + Sbjct: 119 ITVDGKVVNIPSFSVKPGQIVGVRERSKSLEVIANSLAGFNHSKYPWLEWDESSKVGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 IP P ++ +L+VE YS+ Sbjct: 179 HIPERAD---IPENIKEHLIVELYSK 201 >gi|294337244|emb|CAQ52771.1| ribosomal protein S4 [Porotrichum frahmii] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCXVDIPSYRCKPQDFITIKDQRKSEIIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|548869|sp|P36461|RR4_IRIPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|439946|emb|CAA82453.1| ribosomal protein S4 [Iris pallida] Length = 196 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDPKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHEELPNHLTIDPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|295311734|ref|YP_003587470.1| ribosomal protein S4 [Oncidium Gower Ramsey] gi|254833111|gb|ACT83114.1| ribosomal protein S4 [Oncidium Gower Ramsey] Length = 201 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + LH K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKIPRSRSDLQTQLH----SGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKARDIITTKDKERSKALIQNYLVSSPRGELPNHLTIDSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|92417453|gb|ABE76822.1| ribosomal protein subunit 4 [Dicranoweisia cirrata] Length = 198 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 DRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|116667413|pdb|2GY9|D Chain D, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 gi|116667465|pdb|2GYB|D Chain D, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143 Length = 204 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 79/212 (37%), Positives = 123/212 (58%), Gaps = 16/212 (7%) Query: 3 KRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 + K K+ RR G +L+ + K + PG HG RK + S +G+QLR K Sbjct: 1 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLREK 56 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ Sbjct: 57 QKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 115 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDN 174 V+H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ Sbjct: 116 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 175 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF R P + +L+VE YS+ Sbjct: 176 MEGTFKRKPER---SDLSADINEHLIVELYSK 204 >gi|237749539|ref|ZP_04580019.1| small subunit ribosomal protein S4 [Oxalobacter formigenes OXCC13] gi|229380901|gb|EEO30992.1| small subunit ribosomal protein S4 [Oxalobacter formigenes OXCC13] Length = 207 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++T+ PG HG + ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDTK---PGQHGAKSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG I E++FR F EA+R +G+T NL+ LESRLD +VYR F T +R Sbjct: 58 EKQKVKRMYG-ILERQFRRYFAEAERRKGNTGDNLMQLLESRLDNVVYRMGFGSTRAESR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG+ VNI SY K DVI +++KSK+ ++E+ LAE+ + +++SV+ Sbjct: 117 QLVSHQALMVNGKVVNIPSYLVKPEDVITIREKSKKQNRIVESLSLAEQIGMADWVSVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F RIP + + + +L++E YSR Sbjct: 177 KKMEGVFKRIPDRSE---FANDVNESLIIELYSR 207 >gi|3098150|gb|AAC15523.1| small ribosomal protein 4 [Bryobrittonia longipes] Length = 196 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +V+R PTI ARQ VNHRH+LVNG Sbjct: 57 ERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHILVNGC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A +++ +++ VP +++ + +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQAILIKNIDFSQKYKVPNHLTFDSLQKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|323144988|ref|ZP_08079548.1| ribosomal protein S4 [Succinatimonas hippei YIT 12066] gi|322415267|gb|EFY06041.1| ribosomal protein S4 [Succinatimonas hippei YIT 12066] Length = 207 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 17/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M+K K+ RR G +L+ + K ++T PG HG K + S +G+QLR Sbjct: 1 MAKYTGPALKLSRREGVDLFLKSGVRAIETKCKLDT---APGQHG-ANKPRLSDYGMQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +K+A + G+T NL+ LESRLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-VLERQFRNYYKKAAKMSGNTGENLLQLLESRLDNVVYRMGFGSTRMEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVN 171 Q V+H+ + VN VNI SY+ + DVI V++K+K+ + A L+ + P +I V+ Sbjct: 116 QLVSHKAITVNDHVVNIPSYQVQPSDVIAVREKAKKQLRIKAAIDLSGQRALKPTWIDVD 175 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 H+ M T+ P + P ++ L+VE YS+ Sbjct: 176 HNAMKGTYKNKPERSE---LPSDIKEQLIVELYSK 207 >gi|87125591|ref|ZP_01081436.1| 30S ribosomal protein S4 [Synechococcus sp. RS9917] gi|86166891|gb|EAQ68153.1| 30S ribosomal protein S4 [Synechococcus sp. RS9917] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ + +VP ++ ++ + A Sbjct: 117 VAVNGRVTDIASYQCKAGDVITIRERKGSKKLAEGNLEFPGLANVPPHLELDKTKLSAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 ---IGRCEREWVALEINELLVVEYYSR 200 >gi|312884679|ref|ZP_07744380.1| 30S ribosomal protein S4 [Vibrio caribbenthicus ATCC BAA-2122] gi|309367592|gb|EFP95143.1| 30S ribosomal protein S4 [Vibrio caribbenthicus ATCC BAA-2122] Length = 206 Score = 254 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+F + +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFHNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDGSKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATF R+P + L+VE YS+ Sbjct: 179 EATFKRLPER---SDLSADINEQLIVELYSK 206 >gi|77019145|emb|CAH60178.1| chloroplast 30S ribosomal protein S4 [Schistidium apocarpum] Length = 199 Score = 254 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSSKKISPYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|222103472|gb|ACM44265.1| small ribosomal protein subunit 4 [Gollania varians] Length = 202 Score = 254 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|298500604|ref|ZP_07010408.1| SSU ribosomal protein S4 [Vibrio cholerae MAK 757] gi|297540773|gb|EFH76830.1| SSU ribosomal protein S4 [Vibrio cholerae MAK 757] Length = 206 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSRVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S+ DV+ V++K+K+ + + A ++A +R+ P +I V+ + M Sbjct: 119 SHKAILVNGKVVNVPSFNVAANDVVAVREKAKKQSRIKAALEVAEQREKPTWIEVDVNTM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEQLIVELYSK 206 >gi|47606918|gb|AAT36379.1| ribosomal protein subunit 4 [Pohlia nutans] Length = 199 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 NDRLVDIPSYRCKPQDFITIKDQQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|302871525|ref|YP_003840161.1| ribosomal protein S4 [Caldicellulosiruptor obsidiansis OB47] gi|312127253|ref|YP_003992127.1| 30S ribosomal protein S4 [Caldicellulosiruptor hydrothermalis 108] gi|302574384|gb|ADL42175.1| ribosomal protein S4 [Caldicellulosiruptor obsidiansis OB47] gi|311777272|gb|ADQ06758.1| ribosomal protein S4 [Caldicellulosiruptor hydrothermalis 108] Length = 208 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPIR--EHLIVELYSK 208 >gi|264680561|ref|YP_003280471.1| ribosomal protein S4 [Comamonas testosteroni CNB-2] gi|299532875|ref|ZP_07046262.1| 30S ribosomal protein S4 [Comamonas testosteroni S44] gi|262211077|gb|ACY35175.1| ribosomal protein S4 [Comamonas testosteroni CNB-2] gi|298719099|gb|EFI60069.1| 30S ribosomal protein S4 [Comamonas testosteroni S44] Length = 207 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 131/214 (61%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +T+ PG HG+ + S +GLQLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSIADKAKFDTK---PGQHGRTSGQRTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ ADR RG+T NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAADRKRGNTGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H+ + VNG+SVNI S+ KEGDV+ +++KSK+ A V+EA QL A+ P ++ V+ Sbjct: 117 QLVSHKAITVNGQSVNIPSFSVKEGDVVALREKSKKQARVVEALQLAAQVGFPAWVEVSA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D TF + P + + + +L+VE YSR Sbjct: 177 DKAEGTFKKSPDRDE---FAADINESLIVELYSR 207 >gi|256821686|ref|YP_003145649.1| 30S ribosomal protein S4 [Kangiella koreensis DSM 16069] gi|256795225|gb|ACV25881.1| ribosomal protein S4 [Kangiella koreensis DSM 16069] Length = 206 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 86/211 (40%), Positives = 129/211 (61%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + + T+ PG HG R+S+ S +GLQLR KQ Sbjct: 1 MARYLGPKLKLSRREGVDLGHKSGVRAIETKCKIEVAPGQHG-ARRSRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEADR +G T NL+ LESRLD +VYR + T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEADRLKGATGVNLLQLLESRLDNVVYRMGYAATRGEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ +L+NG +VNI SY K DV+ V++KS++ A ++ A +L A+RD PE+I V+ M Sbjct: 119 SHKAILINGETVNIPSYTVKAEDVVSVREKSQKQARIVAALELAAQRDKPEWIEVDGKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + + NL+VE YS+ Sbjct: 179 EGQFKRVPERSE---LDASINENLIVELYSK 206 >gi|116749016|ref|YP_845703.1| 30S ribosomal protein S4 [Syntrophobacter fumaroxidans MPOB] gi|152112270|sp|A0LIL6|RS4_SYNFM RecName: Full=30S ribosomal protein S4 gi|116698080|gb|ABK17268.1| SSU ribosomal protein S4P [Syntrophobacter fumaroxidans MPOB] Length = 208 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S +I RR L+ + K V R+Y PG HGQ R K S +GLQLR Sbjct: 1 MARYTDSSCRICRRETMKLYLKGDRCYSDKCAVERRNYPPGQHGQGR-GKFSDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+F++ FK ADR +G T N ++ LE R+D VYR F + ARQ Sbjct: 60 KQKIRRMYGLV-EKQFKTYFKHADRQKGVTGTNFLTLLERRIDNTVYRLGFASSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H LVNG+ VNI S+ + GD + V + S+QL + EA + + R +P ++ ++ Sbjct: 119 LVRHSHFLVNGKKVNIPSFLLRPGDSVSVVEGSRQLQMINEAMEAMPRRGLPPWLELDKA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + + +Q LVVEFYS+ Sbjct: 179 KYEGVFKTLPTREE---MNLPVQEQLVVEFYSK 208 >gi|328541092|gb|AEB21770.1| ribosomal protein S4 [Bazzania nitida] Length = 198 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K+ RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKVIRRLGALPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAIN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY CK GD+I ++ K K + + + L + VP +++ + + + + Sbjct: 117 NNIVDIPSYNCKPGDIIAIRDKQKSQSMITKNINLFQNLKVPSHLTFDSIKLCGSINQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TINREWINLKINELLVVEYYSR 196 >gi|294337070|emb|CAQ52685.1| ribosomal protein S4 [Anomodon giraldii] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|222103554|gb|ACM44306.1| small ribosomal protein subunit 4 [Marsupella commutata] Length = 198 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+ + +Y K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTNKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN Sbjct: 57 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 +V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + Sbjct: 117 NDTVDISSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TVNREWVNLKINELLVVEYYSR 196 >gi|172035133|ref|YP_001801634.1| 30S ribosomal protein S4 [Cyanothece sp. ATCC 51142] gi|254764582|sp|B1X067|RS4_CYAA5 RecName: Full=30S ribosomal protein S4 gi|171696587|gb|ACB49568.1| 30S ribosomal protein S4 [Cyanothece sp. ATCC 51142] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP--RRAYPPGQHGQGRR-KRSEYAIRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A RS T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V+VNGR VNI SY+C+ GDVI V+ K V Q ++P+++ + + + Sbjct: 117 VIVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLANLPDHLEFDKNTLTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +K + + LVVE+YSR Sbjct: 177 NDV---IKREWVALQINELLVVEYYSR 200 >gi|3098226|gb|AAC15561.1| small ribosomal protein 4 [Leptotheca boliviana] Length = 200 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+P + L K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGVLPGLTNKTPQLKSNSINQLTAN---KKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 58 G-ITEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N R V+I SYRCK D I +K + K A + + ++ +P +++ N + Sbjct: 117 INDRIVDIPSYRCKPQDFITIKDQRKSQAIINKNLDFYQKYKIPNHLTYNSLEKKGVVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + L+VE+YSR Sbjct: 177 I---LNRESIDLKINELLIVEYYSR 198 >gi|17547713|ref|NP_521115.1| 30S ribosomal protein S4 [Ralstonia solanacearum GMI1000] gi|26399428|sp|Q8XV37|RS4_RALSO RecName: Full=30S ribosomal protein S4 gi|17430018|emb|CAD16703.1| probable 30s ribosomal protein s4 [Ralstonia solanacearum GMI1000] Length = 207 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LAE+ P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQTGFPGWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDRGD---IAGDINESLIVELYSR 207 >gi|294337178|emb|CAQ52739.1| ribosomal protein S4 [Hylocomiastrum umbratum] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + ++ +P++++ + Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITMKNQRKSETIISKNIDFYQKYKIPDHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|119502947|ref|ZP_01625032.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2080] gi|119461293|gb|EAW42383.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2080] Length = 206 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK----SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLQLKSGVRSLDSKCKAETAPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG VNI SY+ + GD++ V++K+K+ + A +A +R +I VN + + Sbjct: 119 SHKGILVNGTVVNIPSYQVRPGDIVSVREKAKKQLRIQAAMSIAEQRGEQVWIEVNSEKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P P + NL+VE YS+ Sbjct: 179 EGTFKSKPERQD---LPSEINENLIVELYSK 206 >gi|114567813|ref|YP_754967.1| 30S ribosomal protein S4 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317309|sp|Q0AUK8|RS4_SYNWW RecName: Full=30S ribosomal protein S4 gi|114338748|gb|ABI69596.1| SSU ribosomal protein S4P [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 209 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + S + RR GE L+ + K V+ R+Y PG HGQ R+ KPS +G+QLR Sbjct: 1 MGRYTDSVCRQCRREGEKLFLKGDRCYSEKCSVSRRAYPPGAHGQGRRQKPSEYGIQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I EK+FR+ F++ADR +G T NL+ LE RLD +VYR F + ARQ Sbjct: 61 KQKTRRIYG-IQEKQFRNYFRKADRKQGITGDNLLVLLERRLDNVVYRLGFASSRKEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHD 173 VNH H +NG NI S + GD+IEV+Q S++ E Q A + PE++SV+ + Sbjct: 120 LVNHGHFFINGHKANIPSMLVRVGDIIEVRQSSRESNKFQEMKEQAAYKTPPEWLSVDAE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M T + P ++ L+VE YSR Sbjct: 180 KMTGTVLAYPRR---EQIDTLVNEQLIVELYSR 209 >gi|3098190|gb|AAC15543.1| small ribosomal protein 4 [Pohlia bolanderi] Length = 199 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 NDRLVDIPSYRCKPQDFITIKDQQKSQIMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|83748174|ref|ZP_00945201.1| SSU ribosomal protein S4P [Ralstonia solanacearum UW551] gi|207744551|ref|YP_002260943.1| 30s ribosomal protein s4 [Ralstonia solanacearum IPO1609] gi|83725142|gb|EAP72293.1| SSU ribosomal protein S4P [Ralstonia solanacearum UW551] gi|206595957|emb|CAQ62884.1| 30s ribosomal protein s4 [Ralstonia solanacearum IPO1609] Length = 207 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LA + P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKSGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P V + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDR---VDIAGDINESLIVELYSR 207 >gi|227513091|ref|ZP_03943140.1| 30S ribosomal protein S4 [Lactobacillus buchneri ATCC 11577] gi|227083666|gb|EEI18978.1| 30S ribosomal protein S4 [Lactobacillus buchneri ATCC 11577] Length = 231 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+ K S +GLQL+ KQK++ Sbjct: 29 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRQKLSEYGLQLKEKQKLRY 87 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + G N + LE RLD IVYR T ARQ VNH Sbjct: 88 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLERRLDNIVYRLGLATTRRQARQLVNHG 146 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G V+ V++KSK L V A + A P+Y+S + D + + Sbjct: 147 HITVDGKRVDIPSYEVKTGQVVSVREKSKDLQVVKNAVE-AVVGRPQYVSFDADKLEGSL 205 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 206 VRLPQREE---LDADIDESLIVEYYNK 229 >gi|212704608|ref|ZP_03312736.1| hypothetical protein DESPIG_02670 [Desulfovibrio piger ATCC 29098] gi|212672007|gb|EEB32490.1| hypothetical protein DESPIG_02670 [Desulfovibrio piger ATCC 29098] Length = 208 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K +I RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTEAKCRICRREGCKLFLKGDRCFTDKCAYDRRPYAPGQHGRARK-KVSEYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I EK+FR F++A+ +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKTRRSYG-ILEKQFRGYFEKAEMQKGVTGTNLLVILERRLDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NG V I S + + GD IEV +K++++ + EA + +A R P ++ + Sbjct: 119 LVRHGIFTLNGHKVTIPSLQVRVGDTIEVPEKNRKIPVLAEAQEVIARRGCPAWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P D+ +PV L+VE YS+ Sbjct: 179 AFKGTVKALPQR-DDIQFPV--NEQLIVELYSK 208 >gi|184153141|ref|YP_001841482.1| 30S ribosomal protein S4 [Lactobacillus reuteri JCM 1112] gi|226699080|sp|B2G6C0|RS4_LACRJ RecName: Full=30S ribosomal protein S4 gi|183224485|dbj|BAG25002.1| 30S ribosomal protein S4 [Lactobacillus reuteri JCM 1112] Length = 201 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R+Y PG HG+ R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRVSRRLGVSLSGTVKE-LARRAYAPGDHGRDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G +I V+ KSK L + A + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQIIAVRDKSKNLDIIKNAVE-AVVSRPSYVDFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ + L+VEFY++ Sbjct: 178 NRIPAR---EDMNADIDEALIVEFYNK 201 >gi|12642222|gb|AAK00193.1| rps4 [Funaria apophysata] Length = 191 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 9/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGVLPGLTNKTPQLKSSSA----NQSAAKKISQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I Sbjct: 56 LNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 PSYRCKPDDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI---LDRE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|222103536|gb|ACM44297.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 4 YRGPRVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 61 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 119 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + + + ++ +P +++ N N +I Sbjct: 120 NDRLVDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 ---LDRDSIDLKINELLVVEYYSR 200 >gi|228015961|gb|ACP50801.1| ribosomal protein S4 [Pinus ponderosa] gi|228016414|gb|ACP51247.1| ribosomal protein S4 [Pinus thunbergii] gi|228016480|gb|ACP51312.1| ribosomal protein S4 [Pinus torreyana subsp. insularis] gi|228017479|gb|ACP52295.1| ribosomal protein S4 [Pinus merkusii] gi|228017735|gb|ACP52547.1| ribosomal protein S4 [Pinus pinaster] gi|270485094|gb|ACP51372.2| ribosomal protein S4 [Pinus torreyana subsp. torreyana] Length = 201 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|26399099|sp|P59139|RR4_HOOLU RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504369|emb|CAC80629.1| small ribosomal protein 4 [Hookeria lucens] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGVLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN VNI SYRCK D I +K + K A + + + ++ P +++ + Sbjct: 117 IGVNDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKFKRPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI L + + LVVE+YSR Sbjct: 177 NRI---LDRESTGLKINELLVVEYYSR 200 >gi|319940172|ref|ZP_08014525.1| 30S ribosomal protein S4 [Streptococcus anginosus 1_2_62CV] gi|319810643|gb|EFW06973.1| 30S ribosomal protein S4 [Streptococcus anginosus 1_2_62CV] Length = 203 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRG-DTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + +G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQATKIKGGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVSVGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y++ Sbjct: 178 TRLPERDE---INPEINEALVVEYYNK 201 >gi|163859246|ref|YP_001633544.1| 30S ribosomal protein S4 [Bordetella petrii DSM 12804] gi|226697810|sp|A9IHR7|RS4_BORPD RecName: Full=30S ribosomal protein S4 gi|163262974|emb|CAP45277.1| 30S ribosomal protein S4 [Bordetella petrii] Length = 207 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 123/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR + VNG + +I S K GDVI V++K+K+ + EA LA +P+++ V+ Sbjct: 117 QLVSHRAIEVNGHTADIASLIVKAGDVITVREKAKKQGRIREALDLASSIGIPQWVEVDT 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M TF +P + ++VVE YSR Sbjct: 177 NKMAGTFKSMPDRAD---VARDINESMVVELYSR 207 >gi|171914054|ref|ZP_02929524.1| 30S ribosomal protein S4 [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 113/208 (54%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 M++ K KI RR G L+G P + R++ PG HG R + K S +G+ L KQK++ Sbjct: 1 MARYTGPKEKIARRFGVALFG-PSKALELRNFPPGQHGARNTRRKLSDYGIALAEKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR F EA R +G T L+ LE RLD +VYR F + FAARQ V H Sbjct: 60 HTYG-VLEKQFRRFFAEASRRKGVTGTILLQMLEQRLDNVVYRMGFANSRFAARQMVGHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 HV VNG+ NI S + K GDV+ VK ++ L + + P++++V+ D + T Sbjct: 119 HVTVNGKRCNIASAQIKAGDVVAVKSTARSQQLANRFLDLTQGVNSPDWMTVDRDKLTGT 178 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + V + LVVE YSR Sbjct: 179 VNRSPEREE---IDVFVNEQLVVELYSR 203 >gi|291613261|ref|YP_003523418.1| ribosomal protein S4 [Sideroxydans lithotrophicus ES-1] gi|291583373|gb|ADE11031.1| ribosomal protein S4 [Sideroxydans lithotrophicus ES-1] Length = 209 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K + RR GE L+ + K V R+Y PG HGQ++ + S +G QLR Sbjct: 1 MARNLDAKCRQCRREGEKLFLKAEKCFTDKCSVERRAYAPGQHGQKKNQRQSEYGGQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR +K A++SRG T +L+ LESRLD + YR F + ARQ Sbjct: 61 KQKLRRIYG-MMEGQFRLTYKRAEQSRGITGESLLQMLESRLDNVSYRMGFGASRSEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +LVNG+ VNI SY+ + GDV+EV +KS+ V A Q A +R PE++ V+ Sbjct: 120 VVRHNSILVNGKRVNIPSYQVRPGDVVEVAEKSRNQLRVKAALQAAEQRGFPEWLEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + P + +LVVE YS+ Sbjct: 180 AFKGTFKAVPQRSE---LPATINEHLVVELYSK 209 >gi|6002023|emb|CAA58918.1| ribosomal protein S4 [Alisma plantago-aquatica] Length = 196 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + V + ++P++++V+ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKTLVQNYIASSSHEELPKHLTVDSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WVGLKINELLVVEY 196 >gi|256847990|ref|ZP_05553434.1| ribosomal protein S4 [Lactobacillus coleohominis 101-4-CHN] gi|256715050|gb|EEU30027.1| ribosomal protein S4 [Lactobacillus coleohominis 101-4-CHN] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG R+ S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRPYAPGDHGNDRRGSLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++FK A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFRNLFKRAGKIKEGTHGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY VI V++KSK L + A A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVSVDQVIGVREKSKDLDIIKNAVD-AVVARPSYVEFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P+ + L+VEFY++ Sbjct: 178 VRLPAR---EDMNADIDEALIVEFYNK 201 >gi|6002081|emb|CAA58950.1| ribosomal protein S4 [Tradescantia pallida] Length = 196 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKPRSR----SDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNH+H Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHKH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + L+ ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSISLSPHEELPKHLTFDSFQHKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 + ++ + + LVVE+ Sbjct: 176 NQ---TIDSKWIGLKINELLVVEY 196 >gi|294337112|emb|CAQ52706.1| ribosomal protein S4 [Entodon dregeanus] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDSIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|288818043|ref|YP_003432390.1| ribosomal protein S4 [Hydrogenobacter thermophilus TK-6] gi|288787442|dbj|BAI69189.1| ribosomal protein S4 [Hydrogenobacter thermophilus TK-6] gi|308751644|gb|ADO45127.1| ribosomal protein S4 [Hydrogenobacter thermophilus TK-6] Length = 209 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 8/211 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGR--PKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQ 56 MS+ K+DRR G L R ++ R++ PG HG + RK K + FGL+L KQ Sbjct: 1 MSRYIGPWSKVDRRFGAVLSNRKSAGKVLSRRNFPPGQHGRVKGRKRKLTEFGLRLMEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG + EK+FR F+EA +++G+T L+ LE RLD +VYR T ARQ + Sbjct: 61 KLKFLYGGLREKQFRRYFEEASKAKGNTGQVLLQLLERRLDNVVYRLGMAVTRRQARQMI 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNM 175 H H+LVNG+ V+I SYR + GD+IE+K S+ + +E + R +P ++ ++ +N Sbjct: 121 AHGHILVNGKKVDIPSYRVQVGDIIELKPASRDVPQFIENIQSIDPRSIPPWLELDKENF 180 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P K+V V + V+EFYSR Sbjct: 181 RGKVIDLP---KEVELEVPVNVQYVIEFYSR 208 >gi|294337202|emb|CAQ52795.1| ribosomal protein S4 [Macrothamnium hylocomioides] Length = 202 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G ++P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNRTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ +E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLIEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|222529703|ref|YP_002573585.1| 30S ribosomal protein S4 [Caldicellulosiruptor bescii DSM 6725] gi|254764564|sp|B9MKF4|RS4_ANATD RecName: Full=30S ribosomal protein S4 gi|222456550|gb|ACM60812.1| ribosomal protein S4 [Caldicellulosiruptor bescii DSM 6725] Length = 208 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARL 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPIR--EHLIVELYSK 208 >gi|152112269|sp|A3CRA2|RS4_STRSV RecName: Full=30S ribosomal protein S4 gi|324991900|gb|EGC23823.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK405] gi|324996210|gb|EGC28120.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK678] gi|327458525|gb|EGF04875.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1] gi|327490386|gb|EGF22172.1| 30S ribosomal protein S4 [Streptococcus sanguinis SK1058] Length = 203 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-VGEKQFRNLFVQASKIKEGILGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSLKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 178 TRLPERDE---INPEINEALIVEFYNK 201 >gi|28212155|ref|NP_783099.1| 30S ribosomal protein S4 [Clostridium tetani E88] gi|41017837|sp|Q890Q9|RS4_CLOTE RecName: Full=30S ribosomal protein S4 gi|28204599|gb|AAO37036.1| SSU ribosomal protein S4P [Clostridium tetani E88] Length = 206 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTEANCRLCRREGLKLYLKGDRCYTDKCAFSRRGYAPGQHGQSRK-KISNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR+ +K AD++RG T NL+ LE RLD +VYR + + +RQ Sbjct: 60 KQKAKRIYG-VLEKQFRTYYKRADKARGITGENLLVLLEMRLDNVVYRLGYGDSRKESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNG+ VNI S+ DVI V +KS+ + R +P ++ N +N Sbjct: 119 LVTHGHFLVNGKKVNIPSFNVSVNDVITVSEKSRATEKFKTFIENP-RTLPNWLEGNLEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V PS +D+ PV L+VE YS+ Sbjct: 178 FEGKVVSQPSR-EDIDVPV--NETLIVELYSK 206 >gi|222103438|gb|ACM44248.1| small ribosomal protein subunit 4 [Brothera leana] Length = 203 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ + K S + ++L KQK++ +Y Sbjct: 4 RYRGPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 61 G-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN VNI SYRCK D I +K + K V + + +++ VP +++ N + Sbjct: 120 VNNYIVNIPSYRCKPQDFITIKNRQKSQFIVAKNIEFSQKYKVPNHLTFNSLEKKGLVNQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LNKESIGLKINELLVVEYYSR 201 >gi|77862523|gb|ABB04534.1| small ribosomal protein 4 [Cryptomitrium himalayense] Length = 201 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N ++I SY CK D+I +K + K + + + ++ +P +++ + + Sbjct: 117 LINNNLIDIPSYNCKPKDLITIKDRPKSKSIITKNLNCFQKPKIPNHLTFDLTQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 177 QVIDR---EWIFLKINELLVVEYYSR 199 >gi|67035632|gb|AAY62747.1| small ribosomal protein subunit 4 [Holomitrium arboreum] Length = 199 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VN+ SYRCK D I +K + K +++ +++ +P +++ + + Sbjct: 116 VNNRIVNVPSYRCKPQDFITIKDRQKSQVMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDQESIGLKINELLVVEYYSR 197 >gi|328541112|gb|AEB21780.1| ribosomal protein S4 [Telaranea diacantha] Length = 199 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE R D ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRSDNTIFRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + ++S L + +P +++++ + + + Sbjct: 117 NENIVDIPSYNCEPGDIITIRDKQKSQSLITKSSSLFQNLKIPNHLTLDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINRESINLKINELLVVEYYSR 197 >gi|325272032|ref|ZP_08138475.1| 30S ribosomal protein S4 [Pseudomonas sp. TJI-51] gi|324102836|gb|EGC00240.1| 30S ribosomal protein S4 [Pseudomonas sp. TJI-51] Length = 206 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 119 SHKAISVNGKTVNIPSYQVRPGDVVAVREKSLSQLRIVQALELCAQRGRVEWVDVDAAKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + NL+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINENLIVELYSK 206 >gi|3914873|sp|O47029|RR4_NAROD RecName: Full=30S ribosomal protein S4, chloroplastic gi|2808630|emb|CAA58940.1| ribosomal protein S4 [Narcissus x odorus] Length = 196 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNPLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + A R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSIASAPREELPNHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|14276326|gb|AAK58201.1| small ribosomal protein 4 [Bartramia halleriana] Length = 199 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|6002039|emb|CAA58927.1| ribosomal protein S4 [Costus lucanusianus] Length = 196 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRPRS----GSDLKNQLHSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + L ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIALCPHEELPKHLTFDSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|59710868|ref|YP_203644.1| 30S ribosomal protein S4 [Vibrio fischeri ES114] gi|197334188|ref|YP_002155020.1| ribosomal protein S4 [Vibrio fischeri MJ11] gi|75507103|sp|Q5E890|RS4_VIBF1 RecName: Full=30S ribosomal protein S4 gi|226695098|sp|B5FGE0|RS4_VIBFM RecName: Full=30S ribosomal protein S4 gi|59478969|gb|AAW84756.1| 30S ribosomal subunit protein S4 [Vibrio fischeri ES114] gi|197315678|gb|ACH65125.1| ribosomal protein S4 [Vibrio fischeri MJ11] Length = 206 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKDAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKSILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEHLIVELYSK 206 >gi|118625973|emb|CAL39308.1| small ribosomal protein 4 [Gongylanthus scariosus] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K+ RR+G K+ Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKVIRRLGVLPGLTNKTLKPKSGYI---DRSISNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A ++G T L+ LE R D ++R PTI ARQ VNH H Sbjct: 58 HYG-LTERQLLKYVRIAREAKGSTGQVLLQLLEMRSDNTIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I VK K K + + + L P +++++ + + Sbjct: 117 ISINNSIVDIPSYNCEPGDIITVKDKRKSRSVITKNINLFRNLRTPSHLTLDSTELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 DQ---TINREWIDLKINELLVVEYYSR 200 >gi|170723882|ref|YP_001751570.1| 30S ribosomal protein S4 [Pseudomonas putida W619] gi|226699108|sp|B1JAI8|RS4_PSEPW RecName: Full=30S ribosomal protein S4 gi|169761885|gb|ACA75201.1| ribosomal protein S4 [Pseudomonas putida W619] Length = 206 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 119 SHKAISVNGKTVNIPSYQVRPGDVVAVREKSSNQLRIVQALELCAQRGRVEWVDVDSAKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + NL+VE YS+ Sbjct: 179 SGVFKNVPARGD---LSADINENLIVELYSK 206 >gi|63145910|gb|AAY33893.1| small ribosomal protein 4 [Jensenia difformis] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMKK 60 S+ + KI RR+G L G + +RS G Q K S + ++L KQK++ Sbjct: 2 SRYRGPRVKIIRRLGA-LPGLSHKMLGSRS---GYTNQLTANKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +L+N VNI SY CK DVI +K + + + + + L E+ +P +++ + + Sbjct: 117 ILINDDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---EWISLKINELLVVEYYSR 200 >gi|294337212|emb|CAQ52755.1| ribosomal protein S4 [Neckera complanata] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337114|emb|CAQ52707.1| ribosomal protein S4 [Eurhynchiastrum pulchellum] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P L K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSGSINQLTSN---KKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSFLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|326203868|ref|ZP_08193730.1| ribosomal protein S4 [Clostridium papyrosolvens DSM 2782] gi|325985966|gb|EGD46800.1| ribosomal protein S4 [Clostridium papyrosolvens DSM 2782] Length = 208 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR GE L+ + K V R Y PG HGQ K K S +G+QLR Sbjct: 1 MARYTDASCRLCRREGEKLFLKGERCYTDKCSVARRPYAPGQHGQA-KKKMSEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 K K++++YG + E +F F+ A R +G T NL+ LE+RLD +VYR + +RQ Sbjct: 60 KAKVRRFYG-VLEGQFSQYFEMASRRKGITGENLLQILETRLDNVVYRLGLGTSRPESRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H +NG+ VNI SY K GDVI V KSK V ++A + VP+++ N + Sbjct: 119 LVTHGHFTINGKRVNIPSYLIKVGDVIAVADKSKSSPKVKSIREIAGGKVVPKWLEFNEE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V V +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVVALPAR-EDIDLPIR--EHLIVELYSK 208 >gi|77862537|gb|ABB04541.1| small ribosomal protein 4 [Marchantia chenopoda] Length = 201 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK D+I +K + K + + + ++ +P +++ + + Sbjct: 117 LINNNPVDIPSYNCKPKDIITIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLIQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|325955022|ref|YP_004238682.1| ribosomal protein S4 [Weeksella virosa DSM 16922] gi|323437640|gb|ADX68104.1| ribosomal protein S4 [Weeksella virosa DSM 16922] Length = 200 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 124/207 (59%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ G+ ++G KS + Y PG HG +R+SK S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGQTIFGDDKS-FEKKKYPPGQHGPNKRRSKKSEYAIQLAEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I E++F +++K+A+ S+G T L+ ESRLD +VYR PT AARQ V+H+ Sbjct: 60 YTYG-ILERQFENMYKKANASKGITGEVLLQLCESRLDNVVYRLGIAPTRSAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ KEGDV+ V++KSK L ++ ++ L R E++ N + TF Sbjct: 119 HITVNGNIVNIPSYQLKEGDVVAVREKSKSLQTIKDS--LHARREYEWLVWNDEQTSGTF 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P V P ++ L+VE YS+ Sbjct: 177 TKAPER---VQIPEDIKELLIVELYSK 200 >gi|294337224|emb|CAQ52761.1| ribosomal protein S4 [Neckeropsis nitidula] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPTHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337086|emb|CAQ52693.1| ribosomal protein S4 [Callicostella cf. africana Rikkinen et al. 21] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K P S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGVLPGLTNKIPELKSSSI---TQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P +++ N Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKIKIPNHLTYNFLEKKGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRDSIGLKINELLVVEYYSR 200 >gi|197294102|ref|YP_002149723.1| ribosomal protein S4 [Cicer arietinum] gi|197089790|gb|ACH41060.1| ribosomal protein S4 [Cicer arietinum] Length = 201 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G+ K P + G L Q SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGDLPGLTSKRP----TVGSELRNQSSSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SYRCK D+I K K + + + + + R ++P +++++ Sbjct: 116 VFVNGRIVDIPSYRCKPQDIITAKDDQKSITLIQNSLESSPREELPNHLTLHPSEYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|328957152|ref|YP_004374538.1| 30S ribosomal protein S4 [Carnobacterium sp. 17-4] gi|328673476|gb|AEB29522.1| 30S ribosomal protein S4 [Carnobacterium sp. 17-4] Length = 201 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K + +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-IERRPYAPGPHGPNSRKKLTEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F ++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-MNERQFSNLFLKAGKIKEGKHGENFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G VI V++KSK + + A++ A P+Y++ + + + ++ Sbjct: 119 HILVDGKRVDIPSYSVSVGQVITVREKSKNMDIIKSAAE-ALFGRPDYVTFDVEKLEGSY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + ++VE+YSR Sbjct: 178 NRLPLRDE---LSAEIDETIIVEYYSR 201 >gi|88809256|ref|ZP_01124765.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7805] gi|88787198|gb|EAR18356.1| 30S ribosomal protein S4 [Synechococcus sp. WH 7805] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ Q +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKPGDVIAIRERKCSKLLAEGNLQFPGLANVPPHLELDKPKLNAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 177 VG---RCEREWVALEINELLVVEYYSR 200 >gi|294337277|emb|CAQ52787.1| ribosomal protein S4 [Thamnobryum subserratum] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|39997924|ref|NP_953875.1| 30S ribosomal protein S4 [Geobacter sulfurreducens PCA] gi|61215647|sp|Q749B2|RS4_GEOSL RecName: Full=30S ribosomal protein S4 gi|39984869|gb|AAR36225.1| ribosomal protein S4 [Geobacter sulfurreducens PCA] gi|307635098|gb|ADI85585.2| ribosomal protein S4 [Geobacter sulfurreducens KN400] Length = 208 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R K S +G+QLR Sbjct: 1 MARYTGPSCRLCRRENMELFLKGERCYTDKCAIKRRNYPPGQHGQGR-PKVSNYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FRS F+EADR +G T NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVRRIYG-ILEKQFRSYFQEADRLKGVTGENLLSLLERRLDNVVYRLGFAASRTEARI 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG+ NI S + + GDV+E+K+KS+++A + E+ + R +P+++ + D Sbjct: 119 LVRHNHFTLNGKKANIPSIQLRAGDVVELKEKSRKIACINESLDAVVRRGIPQWLELEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +D+ P +Q L+VE YS+ Sbjct: 179 AYKGVVKTLPVR-EDITMP--IQEQLIVELYSK 208 >gi|312868744|ref|ZP_07728936.1| ribosomal protein S4 [Lactobacillus oris PB013-T2-3] gi|311095730|gb|EFQ53982.1| ribosomal protein S4 [Lactobacillus oris PB013-T2-3] Length = 201 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG+ R K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRVSRRLGVSLSGTGKE-LARRPYAPGDHGRDRHGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFANLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY VI V++KSK L + A A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVDVNQVIGVREKSKNLDIIKNAVD-AVVSRPSYVDFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ + L+VEFY++ Sbjct: 178 NRIPAR---EDMDADIDEALIVEFYNK 201 >gi|187930339|ref|YP_001900826.1| 30S ribosomal protein S4 [Ralstonia pickettii 12J] gi|226699109|sp|B2UEJ4|RS4_RALPJ RecName: Full=30S ribosomal protein S4 gi|187727229|gb|ACD28394.1| ribosomal protein S4 [Ralstonia pickettii 12J] Length = 207 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYTGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDVI +++KSK+ + E+ LA + P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQVKSGDVIAIREKSKKQVRIAESLTLAEQSGFPIWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDRAD---IAGDINESLIVELYSR 207 >gi|312793912|ref|YP_004026835.1| 30S ribosomal protein S4 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181052|gb|ADQ41222.1| ribosomal protein S4 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 208 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPIR--EHLIVELYSK 208 >gi|289665160|ref|ZP_06486741.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669367|ref|ZP_06490442.1| 30S ribosomal protein S4 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 208 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + + PG HG RK K S + QLR Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQK---PGQHGAARKGKLSDYATQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K+A +G+T L+ LE+RLD + YR F T AAR Sbjct: 58 EKQKVKRIYG-LLERQFRNYYKKASTKKGNTGEILLQLLETRLDNVCYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISVN 171 Q V+HR VLVNG+SVN+ SY+ K GD I + +K+++ V EA +AE+ P ++ V+ Sbjct: 117 QLVSHRGVLVNGKSVNLASYQIKAGDAITLSEKAQKQLRVQEALTVAEQHDMTPSWVEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P P + L+VE YS+ Sbjct: 177 SKKFSGVFKAVPDRAD---LPSDINEALIVELYSK 208 >gi|269837093|ref|YP_003319321.1| 30S ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745] gi|269786356|gb|ACZ38499.1| ribosomal protein S4 [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 120/217 (55%), Gaps = 14/217 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTR----SYGPGLHGQRRKSKPSYFGL 50 M++ +I RR G L+ + PK P+ R ++ PG HGQ+R +PS +GL Sbjct: 1 MARYTGPVCRICRREGMKLFLKGERCFGPKCPIVQRQPAKNFPPGQHGQKRTRRPSEYGL 60 Query: 51 QLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIF 110 QLR KQK+++ YG I E++FR F+EA+R G T NL+ LE RLD +VYR F + Sbjct: 61 QLREKQKIRRMYG-IMERQFRRHFEEAERRGGVTGENLLQILEMRLDNVVYRLGFADSRN 119 Query: 111 AARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYIS 169 ARQ V H H VNGR NI S+ K GDV+ V+ +S++ A + VPE+IS Sbjct: 120 QARQLVRHGHFTVNGRKTNIPSFIVKPGDVVAVRPQSREREYFKIVAETAGSKQVPEWIS 179 Query: 170 VNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +++ + P+ + P LVVEFYSR Sbjct: 180 RDMESLSGRIINAPTPDQIERPPF--NEQLVVEFYSR 214 >gi|294337082|emb|CAQ52691.1| ribosomal protein S4 [Brachythecium rivulare] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T + LE RLD +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 116 HILVNDCIVDIPSYRCKPQDFITIKNQRKSETVIDKNIEFYQKYKIPNHLTYSFLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|228017043|gb|ACP51866.1| ribosomal protein S4 [Pinus canariensis] Length = 201 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRINDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|206900118|ref|YP_002250727.1| ribosomal protein S4 [Dictyoglomus thermophilum H-6-12] gi|226732178|sp|B5YDW9|RS4_DICT6 RecName: Full=30S ribosomal protein S4 gi|206739221|gb|ACI18279.1| ribosomal protein S4 [Dictyoglomus thermophilum H-6-12] Length = 206 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K P R + PG HG+ ++ K + +GL+LR Sbjct: 1 MARYTGPDCRLCRREGMKLFLKGTKCFSEKCPFERRPFAPGQHGRAQR-KLTEYGLRLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ+ K+ YG + E++FR F+ A + RG T L+ LE+RLD +VYR + + ARQ Sbjct: 60 KQRAKRIYG-VLERQFRRYFEIASKGRGVTGERLLQLLETRLDNVVYRLGWALSRDQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H + VNG+ VNI SY K GDV+E+ K L V EA ++VP ++ ++ + Sbjct: 119 LVSHGKIAVNGKRVNIPSYNLKPGDVVELLDK--DLIPVQEAISVFGNKNVPAWLELDRE 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +R+P K +Q L+VEFYSR Sbjct: 177 NFRGRVLRLP---KREEIDTPVQEQLIVEFYSR 206 >gi|290487064|gb|ADD29916.1| ribosomal protein S4 [Dillenia indica] Length = 201 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGSLPGLTSKRPKTR----SDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMTSTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D++ VK + K A + + ++P++++++ Sbjct: 116 ILVNDRIVDIPSYRCKPRDILTVKDEHKSRALIQNYLDSSPHEELPKHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---CVGLKINELLVVEYYSR 199 >gi|227431364|ref|ZP_03913416.1| ribosomal protein S4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352874|gb|EEJ43048.1| ribosomal protein S4 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 203 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 123/205 (60%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K +I RR+G +L G K ++ R+Y PG HG R++K S +G+QLR KQK++ Sbjct: 1 MSRYTGPKWRISRRLGVSLSGTGKE-LSRRAYAPGDHGAGRRAKISEYGMQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F +A + +G N + LE RLD++VYR T ARQ VNH Sbjct: 60 TYG-LTERQFKALFNKAGKIRKGTHGTNFMISLEQRLDSVVYRLGLATTRQQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G V+ V++KSK + + A + P+++S++ + + + Sbjct: 119 HILVDGKRVDIPSYSVQPGQVVSVREKSKNILPIQTAIESVVAR-PQFVSLDTEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + + L+VE+Y Sbjct: 178 VRLPEREE---LDADINEALIVEYY 199 >gi|222103470|gb|ACM44264.1| small ribosomal protein subunit 4 [Drummondia sinensis] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 4 YRGPRVRIIRRLGALPGLTSKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 61 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 119 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 120 NDCIVNIPSYRCKPQDFITIKDRQKSQAIISKNIDFSQKYKVPNHLTFNSLQKKGLVNQI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 ---LDRESIDLKINELLVVEYYSR 200 >gi|72383580|ref|YP_292935.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. NATL2A] gi|90101705|sp|Q46LZ9|RS4_PROMT RecName: Full=30S ribosomal protein S4 gi|72003430|gb|AAZ59232.1| SSU ribosomal protein S4P [Prochlorococcus marinus str. NATL2A] Length = 202 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RS+ PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSHPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++ + +VP ++ ++ + A Sbjct: 117 VTVNGRITDIASYQCKAGDVIAIRDNKASKQLAQANLEFPGLANVPPHLELDKTKLSAK- 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + + LVVE+YSR Sbjct: 176 --ISAKTDREWVAIEINELLVVEYYSR 200 >gi|317970558|ref|ZP_07971948.1| 30S ribosomal protein S4 [Synechococcus sp. CB0205] Length = 202 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKSA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY+CK GDV+ ++++ + + ++P ++ ++ + VA Sbjct: 117 VTVNGRVVDIASYQCKAGDVVAIRERKQSKKLAEANLEFPGLANIPPHLELDKNKQVAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 S + + + LVVE+YSR Sbjct: 177 ---ISKCEREWVALEINELLVVEYYSR 200 >gi|291514967|emb|CBK64177.1| SSU ribosomal protein S4P [Alistipes shahii WAL 8301] Length = 202 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M K K KI R+ GE ++G K + R+Y PG HG R++ K S +G QL KQK K Sbjct: 1 MGKYIGPKSKIARKFGEAIYGADKV-LEKRNYPPGQHGLARKRKKVSEYGTQLSEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F +++A R G T NL+ LE RLD +VYR PT AARQ V+H Sbjct: 60 YTYG-LLEKQFSRTYEQAARMGGITGENLLKLLECRLDNVVYRLGIAPTRAAARQLVSHC 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY + GDV+ V++KSK L + + + + ++ ++ +M F Sbjct: 119 HICVNGSVVNIPSYSLRAGDVVSVREKSKSLEVISASLAGSSKSRYAWLEWDNASMSGRF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P + P ++ L+VE YS+ Sbjct: 179 LQKPEREE---IPENIKEQLIVELYSK 202 >gi|63191734|gb|AAY34827.1| small ribosomal protein subunit 4 [Hedwigidium integrifolium] Length = 199 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKSKIPNHLTYNSLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRELIGLKINELLVVEYYSR 197 >gi|48527423|gb|AAT45844.1| small ribosomal protein 4 [Plagiochila trabeculata] Length = 202 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKLKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMCIARKAKGSTGEVLLQLLEMRSDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N VNI SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDMVNIPSYNCESGDIITIGNKKKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + L VE+YSR Sbjct: 177 NQMINR---EWINLKINELLAVEYYSR 200 >gi|294337267|emb|CAQ52782.1| ribosomal protein S4 [Taiwanobryum robustum] Length = 202 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D+I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRKSETIISKNMEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|6002047|emb|CAA58933.1| ribosomal protein S4 [Eichhornia crassipes] Length = 196 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----VSDLKNQLRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPPARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K A + + + ++ ++P +++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDKQGSKALIQNSIAVSSQEELPFHLTFDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|217424827|ref|ZP_03456324.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 576] gi|217392283|gb|EEC32308.1| 30S ribosomal protein S4 [Burkholderia pseudomallei 576] Length = 207 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRISGARTSDYGTQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG NI S + + GDV+ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 117 QLVSHKAITVNGIVANIPSQQVRAGDVVAIREKAKKQARIVEALSLAEQGGMPSWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 177 KKFEGTFKQVPERAD---IAGDINESLIVELYSR 207 >gi|26399094|sp|P59136|RR4_CANTA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504379|emb|CAC80634.1| small ribosomal protein 4 [Canalohypopterygium tamariscinum] Length = 202 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P +S K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKTP-QLKSSPINQ--STSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K A + + + +P ++ N + Sbjct: 117 ILVNGHIVDIPSYRCKPQDFITIKNQRKSQAIINKNMNFYRKYKIPNHLIYNSLDKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|88812733|ref|ZP_01127979.1| 30S ribosomal protein S4 [Nitrococcus mobilis Nb-231] gi|88789971|gb|EAR21092.1| 30S ribosomal protein S4 [Nitrococcus mobilis Nb-231] Length = 206 Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + + P++ + PG HGQRR + S +GLQLR KQ Sbjct: 1 MARYTGPTCKLARREGTDLFLKSRVRPLDNKCKLDTPPGQHGQRR-GRISDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR +KEADR +G+T L+ LESRLD VYR F T ARQ V Sbjct: 60 KVRRTYG-VLERQFRKYYKEADRRKGNTGETLLQLLESRLDNTVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNM 175 NHR +LVNGR NI S GD++ VK+K+K+ V A ++A++ +P ++ V+ Sbjct: 119 NHRAILVNGRVSNISSRILNPGDLVSVKEKAKKQLRVQAALEMAQQIGLPAWVEVDTKQF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRMPDR---SDLSADINEHLIVELYSK 206 >gi|77862513|gb|ABB04529.1| small ribosomal protein 4 [Athalamia hyalina] Length = 200 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ Y + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTNKTLKLKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD IV+R PTI ARQ +NH H+L Sbjct: 58 G-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLINHPHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY CK DVI +K + K + + + ++ +P +++ + + + Sbjct: 117 INNNMVDIPSYNCKPKDVISIKDRPKSQSIITKNLNYFQKQKIPNHLTFDLMQVKGLVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + LVVE+YSR Sbjct: 177 IIDR---EWIFLKINELLVVEYYSR 198 >gi|116511114|ref|YP_808330.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris SK11] gi|125623168|ref|YP_001031651.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris MG1363] gi|122940375|sp|Q032G4|RS4_LACLS RecName: Full=30S ribosomal protein S4 gi|152060956|sp|A2RI10|RS4_LACLM RecName: Full=30S ribosomal protein S4 gi|116106768|gb|ABJ71908.1| SSU ribosomal protein S4P [Lactococcus lactis subsp. cremoris SK11] gi|124491976|emb|CAL96903.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris MG1363] gi|300069915|gb|ADJ59315.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. cremoris NZ9000] Length = 203 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRYGISLTGSGKE-IARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++FR+++ A + + G +N ++ LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-LSERQFRNLYVAATKVKEGTVGYNFMTLLEQRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+R + G VI V++KS ++ ++LEA + A + ++S + D + T Sbjct: 119 HILVDGKRVDIPSFRVQPGQVISVREKSMKVPAILEAVE-ATKGRANFVSFDADKLEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VEFY++ Sbjct: 178 VRLPERDE---INPEINDALIVEFYNK 201 >gi|294337279|emb|CAQ52788.1| ribosomal protein S4 [Thamnobryum tumidicaule] Length = 202 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK---FSSINQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A R++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCMVDIPSYRCKPQDFITIKDQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|46947049|gb|AAT06757.1| ribosomal protein subunit 4 [Dendro-hypnum subspininervium] Length = 200 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G L K+ S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALLGLTNKTAQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K A + + ++ +P +++ + + Sbjct: 117 VNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKYKIPNHLTYSSLEKKGFVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + L+VE+YSR Sbjct: 177 I---LDRESIGLKINELLIVEYYSR 198 >gi|294337246|emb|CAQ52772.1| ribosomal protein S4 [Porotrichum fruticosum] Length = 202 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLESSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|162022123|ref|YP_246565.2| 30S ribosomal protein S4 [Rickettsia felis URRWXCal2] gi|90101714|sp|Q4UM23|RS4_RICFE RecName: Full=30S ribosomal protein S4 Length = 205 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDVIEVK+ KQ+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVIEVKESVKQIPLIQESVSKQAQTTPGYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPA-LSDVPYPFEAEVHLVIELYSR 205 >gi|6002069|emb|CAA58942.1| ribosomal protein S4 [Nelumbo nucifera] Length = 196 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRP----KAGSDFRNQARSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVCIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WVGLKINELLVVEY 196 >gi|332185474|ref|ZP_08387222.1| ribosomal protein S4 [Sphingomonas sp. S17] gi|332014452|gb|EGI56509.1| ribosomal protein S4 [Sphingomonas sp. S17] Length = 190 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 121/192 (63%), Positives = 149/192 (77%), Gaps = 2/192 (1%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +GEN+WGRPKSPVN R YGPG HGQRRK K S FGLQLRAKQK+K YYGD++EK+F++ + Sbjct: 1 MGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDFGLQLRAKQKLKGYYGDVTEKQFKACY 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 +EA R +GDTS NLI LE RLD IVYRAKF PTIFAARQ V+H H+ VNG N+ S R Sbjct: 61 QEAARMKGDTSQNLIGLLEQRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNVASRR 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 C GD I + K+ ++A VLEA QLAER+VP+Y++ + + VA R+P +L +VPYPV Sbjct: 121 CFVGDEISLGSKAAEMALVLEAQQLAEREVPDYVTADGNTKVA-LTRVP-TLDEVPYPVK 178 Query: 195 MQPNLVVEFYSR 206 M+PNLVVEFYSR Sbjct: 179 MEPNLVVEFYSR 190 >gi|86158343|ref|YP_465128.1| 30S ribosomal protein S4 [Anaeromyxobacter dehalogenans 2CP-C] gi|197122365|ref|YP_002134316.1| 30S ribosomal protein S4 [Anaeromyxobacter sp. K] gi|220917147|ref|YP_002492451.1| RNA-binding S4 domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|123497980|sp|Q2IJ65|RS4_ANADE RecName: Full=30S ribosomal protein S4 gi|226697798|sp|B4UBC5|RS4_ANASK RecName: Full=30S ribosomal protein S4 gi|254764563|sp|B8J886|RS4_ANAD2 RecName: Full=30S ribosomal protein S4 gi|85774854|gb|ABC81691.1| SSU ribosomal protein S4P [Anaeromyxobacter dehalogenans 2CP-C] gi|196172214|gb|ACG73187.1| RNA-binding S4 domain protein [Anaeromyxobacter sp. K] gi|219955001|gb|ACL65385.1| RNA-binding S4 domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR ++ + K + R Y PG HGQ R +K S +G+QLR Sbjct: 1 MARYSESVCRLCRRENLKMYLKGDRCYTDKCAIERRPYPPGQHGQGR-TKFSEYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E FR ++ A ++G T NL+ LE RLD +V+R F T ARQ Sbjct: 60 KQKVKRMYG-LLEAGFRHAYQNAAAAKGKTGENLLQTLELRLDNVVFRLGFADTRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H VNGR VNI SY C+ GD +E+K +SK++ + EA + R VP ++ ++ Sbjct: 119 LVRHGHFKVNGRKVNIPSYLCRPGDKVELKDRSKKVVRITEALEAVDRRGVPAWLDLDKG 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P+ +D+ P +Q L+VE YS+ Sbjct: 179 GFKGTVKTSPAR-EDITMP--IQEQLIVELYSK 208 >gi|32266901|ref|NP_860933.1| 30S ribosomal protein S4 [Helicobacter hepaticus ATCC 51449] gi|41017829|sp|Q7VGC0|RS4_HELHP RecName: Full=30S ribosomal protein S4 gi|32262953|gb|AAP77999.1| ribosomal protein S4 [Helicobacter hepaticus ATCC 51449] Length = 208 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + K ++ R YGPG HGQ+R K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGISLALKGERRLAGKCALDKRPYGPGQHGQKR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++FKEA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKIMYG-VSEKQFRALFKEANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SY K G IEVK+KSK V+ A L ++ + ++ V+ + Sbjct: 119 LVTHGHILVNGKRVDIPSYMVKPGQKIEVKEKSKNNPQVIRAIDLTSQTGIVPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + V + ++ L+VE YS+ Sbjct: 179 KKFGIFTRFPQREEVV---IPIEERLIVELYSK 208 >gi|67035700|gb|AAY62781.1| small ribosomal protein subunit 4 [Pseudobraunia californica] Length = 199 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R +NI SYRCK D I +K + K + +++ +++ +P +++ N +I Sbjct: 117 NNRIINIPSYRCKPQDFITIKDRQKSQSIIIKNMDFSQKYKIPNHLTFNSLENKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|312865798|ref|ZP_07726020.1| ribosomal protein S4 [Streptococcus downei F0415] gi|311098673|gb|EFQ56895.1| ribosomal protein S4 [Streptococcus downei F0415] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNHRGKLSEYGMQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G +N + LE RLD +VYR T ARQFVNH Sbjct: 60 TYG-LGEKQFRNLFVQATKIKEGTLGYNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR G VI V++KS ++ ++LEA + A ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVTPGQVISVREKSAKVPAILEAVE-ATVGRSAFVSFDEEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + L+VEFY++ Sbjct: 178 TRLPERDE---INPEINEALIVEFYNK 201 >gi|254509448|ref|ZP_05121526.1| ribosomal protein S4 [Vibrio parahaemolyticus 16] gi|323495528|ref|ZP_08100602.1| 30S ribosomal protein S4 [Vibrio sinaloensis DSM 21326] gi|219547621|gb|EED24668.1| ribosomal protein S4 [Vibrio parahaemolyticus 16] gi|323319409|gb|EGA72346.1| 30S ribosomal protein S4 [Vibrio sinaloensis DSM 21326] Length = 206 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+++ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKAILVNGKVVNVPSFKVAANDVVAIREKAQKQSRIKAALEVAEQREKPTWIEVDGGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEQLIVELYSK 206 >gi|67035644|gb|AAY62753.1| small ribosomal protein subunit 4 [Hygrodicranum bolivianum] Length = 198 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTSKTPKLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMSPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 DRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|26399087|sp|O78678|RR4_OROMI RecName: Full=Plastid 30S ribosomal protein S4 gi|3421346|emb|CAA07624.1| ribosomal protein S4 [Orobanche minor] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPKAEKDLI----NQSRFVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K K + + + + +P +++++ Sbjct: 116 VLVNGRIVDIPSYRCKPLDIITAKDKQQSRTLIQNSLNSSPHAKIPNHLTLDLFQYKGIV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I +S + + L+VE+YSR Sbjct: 176 NQIINSK---WVGLKINEFLIVEYYSR 199 >gi|312622072|ref|YP_004023685.1| 30S ribosomal protein S4 [Caldicellulosiruptor kronotskyensis 2002] gi|312202539|gb|ADQ45866.1| ribosomal protein S4 [Caldicellulosiruptor kronotskyensis 2002] Length = 208 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARL 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGKVIALPTR-EDIDMPIR--EHLIVELYSK 208 >gi|300702805|ref|YP_003744406.1| 30S ribosomal protein S4 [Ralstonia solanacearum CFBP2957] gi|299070467|emb|CBJ41762.1| 30S ribosomal subunit protein S4 [Ralstonia solanacearum CFBP2957] Length = 207 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGANLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG+++N+ S + K GDV+ +++KSK+ + E+ LA + P +++V+ Sbjct: 117 QLVSHKAILVNGQALNVPSAQIKAGDVVAIREKSKKQVRIAESLSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF + P V + +L+VE YSR Sbjct: 177 KKMEGTFKQAPDR---VDIAGDINESLIVELYSR 207 >gi|196228479|ref|ZP_03127346.1| ribosomal protein S4 [Chthoniobacter flavus Ellin428] gi|196227882|gb|EDY22385.1| ribosomal protein S4 [Chthoniobacter flavus Ellin428] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K +I RR G L+G P + ++YGPG+HG + + K S + + L KQK++ Sbjct: 1 MARYTGPKTRISRRFGVALFG-PSKALERKNYGPGMHGPKGSRRKQSEYAIALGEKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR F A RG T L+ LE+RLD ++YR F + AARQ V+H Sbjct: 60 YQYG-VLERQFRRYFTIASTRRGVTGEILLQLLETRLDNVIYRLGFANSRSAARQLVSHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVAT 178 HV VNGR V++ S+ K GD I +K K + + +L + VPE+++V+ + Sbjct: 119 HVQVNGRKVDVSSFNVKAGDAITIKDKPQSRRLAAKNLELTQITPVPEWLTVDKEQFSGK 178 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIPS + P + L+VE YSR Sbjct: 179 VSRIPSRDEIAPI---VNEQLIVELYSR 203 >gi|83416514|gb|ABC18277.1| small ribosomal subunit protein 4 [Herbertus aduncus] Length = 200 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K + SY K S + ++L KQK+ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTSKILKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLXFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ Sbjct: 58 G-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHIS 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + + Sbjct: 117 INNDIVDIPSYXCEPGDIITIKNKQKXQSIITKNINLFQKLKIPNHLTFDLTKLHGSVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + L VE+YSR Sbjct: 177 MINR---EWVNLKINELLXVEYYSR 198 >gi|313887042|ref|ZP_07820741.1| ribosomal protein S4 [Porphyromonas asaccharolytica PR426713P-I] gi|312923453|gb|EFR34263.1| ribosomal protein S4 [Porphyromonas asaccharolytica PR426713P-I] gi|332176607|gb|AEE12297.1| ribosomal protein S4 [Porphyromonas asaccharolytica DSM 20707] Length = 201 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE ++G K ++ +SY PG HG R+ K S + LQLR KQ K Sbjct: 1 MARYIGPKSKIARKFGEPIFGADKV-LSKKSYPPGQHGNSRRRKQSEYALQLREKQMAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A RS G T L+ LESRLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLERQFRNLFEKAQRSSGITGEVLLQLLESRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G +I V+++ K + + ++ ++ + + Sbjct: 119 IVVDGEVVNIPSYTLKPGQIIGVRERDKSMEVIADSLAGYNHSKYPWLEWDGRTYSGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ + P ++ L+VE YS+ Sbjct: 179 NVPTREE---IPEPIKEQLIVELYSK 201 >gi|262197163|ref|YP_003268372.1| ribosomal protein S4 [Haliangium ochraceum DSM 14365] gi|262080510|gb|ACY16479.1| ribosomal protein S4 [Haliangium ochraceum DSM 14365] Length = 209 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + RSY PG HGQ R+ K S +G QLR Sbjct: 1 MARYTGPVCRLCRREEMKLFLKGERCYTEKCGYDRRSYPPGQHGQSRRRKRSDYGEQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG I+E++FR + A R +G T NLI LE RLD +VYR F ARQ Sbjct: 61 KQKVKRIYG-IAERQFRGYYHRASRMKGVTGENLIQLLERRLDNVVYRMGFACDHAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H L++GR VNI SY + G ++VK+KS+ + ++E+ E R VP +I + D Sbjct: 120 LVLHGHFLIDGRRVNIPSYLIRSGQTVQVKEKSRTVTRIVESLGAVERRGVPVWIDLEKD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +PS + ++ L+VE YS+ Sbjct: 180 AFKGSVKALPSR---SDVSLDIREQLIVELYSK 209 >gi|67035698|gb|AAY62780.1| small ribosomal protein subunit 4 [Dryptodon patens] Length = 199 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQPTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + +++ ++ +P +++ N +I Sbjct: 117 NNCIVNIPSYRCKPQDFITIKDRQKSKSMIIKNMDFYQKYKIPNHLTFNSLENKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|312135469|ref|YP_004002807.1| 30S ribosomal protein S4 [Caldicellulosiruptor owensensis OL] gi|311775520|gb|ADQ05007.1| ribosomal protein S4 [Caldicellulosiruptor owensensis OL] Length = 208 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V+H H VNGR+VNI SY K GDVIEV ++SK +E + A++ P+++ + + Sbjct: 119 LVSHAHFKVNGRTVNIPSYLVKVGDVIEVDERSKSKTRFVEIKEKYAKKPSPKWLEKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N++ + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLIGKVIALPTR-EDIDMPIR--EHLIVELYSK 208 >gi|294337122|emb|CAQ52711.1| ribosomal protein S4 [Glossadelphus glossoides] Length = 202 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|227524306|ref|ZP_03954355.1| 30S ribosomal protein S4 [Lactobacillus hilgardii ATCC 8290] gi|227088537|gb|EEI23849.1| 30S ribosomal protein S4 [Lactobacillus hilgardii ATCC 8290] Length = 231 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G +L G K ++ R Y PG HGQ R+ K S +GLQL+ KQK++ Sbjct: 29 MSRYTGPSWRISRRLGISLSGTGKE-LSRRPYAPGDHGQGRRQKLSEYGLQLKEKQKLRY 87 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + G N + LE RLD IVYR T ARQ VNH Sbjct: 88 MYG-LTERQFSNLFVRAGKIREGKHGVNFMILLERRLDNIVYRLGLATTRRQARQLVNHG 146 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G V+ V++KSK L V A + A P+Y++ + D + + Sbjct: 147 HITVDGKRVDIPSYEVKTGQVVSVREKSKDLQVVKNAVE-AVVGRPQYVNFDADKLEGSL 205 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 206 VRLPQREE---LDADIDESLIVEYYNK 229 >gi|126662239|ref|ZP_01733238.1| 30S ribosomal protein S4 [Flavobacteria bacterium BAL38] gi|126625618|gb|EAZ96307.1| 30S ribosomal protein S4 [Flavobacteria bacterium BAL38] Length = 201 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 123/207 (59%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K R+Y PG HG +++ K S + +QL KQK K Sbjct: 1 MARYTGPKTKIARKFGEAIFGEDK-AFEKRNYPPGQHGLAKKRGKKSEYAVQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR++FK+A + G T L+ E+RLD +VYR P+ AARQ V+HR Sbjct: 60 YTYG-ILEKQFRNLFKKASAASGVTGEILLQLCEARLDNVVYRMGVAPSRRAARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VN+ SY K GD + V++KSK L ++ + + + V E+I+ N+D TF Sbjct: 119 HITVNGELVNVPSYHLKAGDKVAVREKSKSLEAIERSLASSSQ-VYEWITWNNDTKEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE Y++ Sbjct: 178 VSVPQRLQ---IPENIKEQLIVELYNK 201 >gi|115350347|ref|YP_772186.1| 30S ribosomal protein S4 [Burkholderia ambifaria AMMD] gi|115280335|gb|ABI85852.1| SSU ribosomal protein S4P [Burkholderia ambifaria AMMD] Length = 213 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 125/213 (58%), Gaps = 15/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 8 ARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGTQLRE 64 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T ARQ Sbjct: 65 KQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEARQ 123 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V+H+ + VNG N+ S + K GD++ +++K+K+ A ++EA LAE+ +P +++V+ Sbjct: 124 LVSHKSITVNGVVANVPSQQVKAGDIVAIREKAKKQARIVEALSLAEQGGMPSWVAVDAK 183 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF ++P + +L+VE YSR Sbjct: 184 KFEGTFKQMPERAD---IAGDINESLIVELYSR 213 >gi|116494737|ref|YP_806471.1| ribosomal protein S4 [Lactobacillus casei ATCC 334] gi|191638248|ref|YP_001987414.1| 30S ribosomal protein S4 [Lactobacillus casei BL23] gi|239631669|ref|ZP_04674700.1| 30S ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066295|ref|YP_003788318.1| 30S ribosomal protein L4 [Lactobacillus casei str. Zhang] gi|122263845|sp|Q039U3|RS4_LACC3 RecName: Full=30S ribosomal protein S4 gi|226699078|sp|B3WDV5|RS4_LACCB RecName: Full=30S ribosomal protein S4 gi|116104887|gb|ABJ70029.1| SSU ribosomal protein S4P [Lactobacillus casei ATCC 334] gi|190712550|emb|CAQ66556.1| 30S ribosomal protein S4 [Lactobacillus casei BL23] gi|239526134|gb|EEQ65135.1| 30S ribosomal protein S4 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438702|gb|ADK18468.1| Ribosomal protein S4 [Lactobacillus casei str. Zhang] gi|327382278|gb|AEA53754.1| 30S ribosomal protein S4 [Lactobacillus casei LC2W] gi|327385474|gb|AEA56948.1| 30S ribosomal protein S4 [Lactobacillus casei BD-II] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI ++++S+ LA V EA + P Y++ + + Sbjct: 119 HITVDGKRVDIPSYEVEPGQVIALRERSQNLAIVNEAIENTVSR-PAYVTFDDTKKTGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + P + +LVVE+Y Sbjct: 178 VRLPERGELEP---EVDESLVVEYY 199 >gi|328541132|gb|AEB21790.1| ribosomal protein S4 [Telaranea heterotexta] Length = 200 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTLFRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GDVI +K K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCELGDVITIKDKQKSRSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|118626087|emb|CAL39347.1| small ribosomal protein 4 [Cephalozia crassifolia] Length = 202 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGVLPGLTSKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N ++I SY C GD+I ++ K K + + L ++ +P + + + + + Sbjct: 117 ISMNNDMIDIPSYNCDPGDIITMRNKRKSELLITKNINLFQKLKMPSHSTFDPTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LV E+YSR Sbjct: 177 NQIVNR---EGVNLKINELLVAEYYSR 200 >gi|21674972|ref|NP_663037.1| 30S ribosomal protein S4 [Chlorobium tepidum TLS] gi|26399358|sp|P59129|RS4_CHLTE RecName: Full=30S ribosomal protein S4 gi|21648204|gb|AAM73379.1| ribosomal protein S4 [Chlorobium tepidum TLS] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 122/207 (58%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALSPKAEKYLERRPYAPGQHGQSRRGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE RLD +VYR F P+ ARQ V H H Sbjct: 61 LYG-ILEKQFRNYYKKAVAQRGVTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI S+ GD IE +QKS+ L +V ++ + + +PE+I V+ N A F Sbjct: 120 MLVNGKKVNIPSFLVSPGDQIEFRQKSRNLDAVADSLNKVPDSRIPEWIQVDKANRKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP + V P LVVE YS+ Sbjct: 180 LAIPER-EAVQEPF--NEQLVVELYSK 203 >gi|294337240|emb|CAQ52769.1| ribosomal protein S4 [Porotrichodendron superbum] Length = 202 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ + +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSEIIISKNIEFYQKSKISNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|255038115|ref|YP_003088736.1| 30S ribosomal protein S4 [Dyadobacter fermentans DSM 18053] gi|254950871|gb|ACT95571.1| ribosomal protein S4 [Dyadobacter fermentans DSM 18053] Length = 201 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR GE + G P + ++Y PG+HG+ R+SK S + LQL KQK+K Sbjct: 1 MARYTGPKTKVARRYGEPIMG-PSKALAKKNYPPGMHGKGRRSKKSEYALQLAEKQKVKF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FRS+F++A G T NL+ + E+RLD VYR PT AARQ V+H+H Sbjct: 60 IYG-ILERQFRSLFEKASVKAGLTGENLLRYCEARLDNTVYRLGIAPTRRAARQLVSHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G VNI SY + G V+ V++KSK L +V ++ ++ N + F+ Sbjct: 119 ILVDGEIVNIPSYSLRPGQVVTVREKSKSLEAVTDSLAGHSSKGFSWLEWNGQELSGKFI 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P + L+VE YS+ Sbjct: 179 SYPDR---ESIPENINEQLIVELYSK 201 >gi|157325532|ref|YP_001468310.1| ribosomal protein S4 [Ipomoea purpurea] gi|171769950|sp|A7Y3D8|RR4_IPOPU RecName: Full=30S ribosomal protein S4, chloroplastic gi|157056760|gb|ABV02350.1| ribosomal protein S4 [Ipomoea purpurea] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPRAE----SDLRNQSRSGKKSQYCIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTERQLIQYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD-NMVAT 178 +LVNGR V+I SYRCK D+I K K A + + + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITSKDNQKSRALIQNSLESSPHEELPNHLALDPSPYYKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LV+E+YSR Sbjct: 176 VNQIIDTK---WVGLKINEFLVIEYYSR 200 >gi|15672266|ref|NP_266440.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. lactis Il1403] gi|281490826|ref|YP_003352806.1| 50S ribosomal protein S4P [Lactococcus lactis subsp. lactis KF147] gi|26399484|sp|Q9CIS2|RS4_LACLA RecName: Full=30S ribosomal protein S4 gi|12723147|gb|AAK04382.1|AE006266_1 30S ribosomal protein S4 [Lactococcus lactis subsp. lactis Il1403] gi|281374584|gb|ADA64104.1| SSU ribosomal protein S4P [Lactococcus lactis subsp. lactis KF147] gi|326405863|gb|ADZ62934.1| 30S ribosomal protein S4 [Lactococcus lactis subsp. lactis CV56] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRYGISLSGSGKE-IARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++FR+++ A + + G N ++ LE RLD +V+R T ARQFVNH Sbjct: 60 SYG-LSERQFRNLYIAATKVKEGTVGFNFMTLLEQRLDNVVFRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+R + G VI V++KS ++ ++LEA + A + ++S + D + T Sbjct: 119 HILVDGKRVDIPSFRVQPGQVISVREKSMKVPAILEAVE-ATKGRANFVSFDADKLEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + L+VEFY++ Sbjct: 178 VRLPERDE---INPEINEALIVEFYNK 201 >gi|157689516|gb|ABV65314.1| ribosomal protein S4 [Lythrum flagellare] Length = 195 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I + K A + + +VP +++++ +I S Sbjct: 116 IVDIPSYRCKPRDIITARDDQKSKAMIQNYLDSSPHEEVPNHLTLHPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|63191647|gb|AAY34785.1| small ribosomal protein subunit 4 [Leskeadelphus bolivianus] Length = 199 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|293602599|ref|ZP_06685042.1| 30S ribosomal protein S4 [Achromobacter piechaudii ATCC 43553] gi|292818971|gb|EFF78009.1| 30S ribosomal protein S4 [Achromobacter piechaudii ATCC 43553] Length = 207 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 122/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR + +NG + +I S K GDV+ +++K+K+ + E+ LA +P+++ V+ Sbjct: 117 QLVSHRAIELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF +P + ++VVE YSR Sbjct: 177 TKLTGTFKSVPDRAD---VARDINESMVVELYSR 207 >gi|325280942|ref|YP_004253484.1| ribosomal protein S4 [Odoribacter splanchnicus DSM 20712] gi|324312751|gb|ADY33304.1| ribosomal protein S4 [Odoribacter splanchnicus DSM 20712] Length = 202 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ GE ++G K + R+Y G HG RR+ K S +G+QL+ KQK K Sbjct: 1 MARYTGPKSKIARKFGEPIYGPDK-ALERRNYPSGQHGLARRRRKISEYGVQLKEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR +F++A+R+ G T L+ LE RLD +VYR PT AARQ V+HR Sbjct: 60 YTYG-LLEKQFRILFEKAERAGGVTGEVLLQMLECRLDNVVYRLGIAPTRAAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG NI S K GDV+ V++KSK L V ++ + ++ + +M Sbjct: 119 HITVNGGVCNIPSAAVKAGDVVAVREKSKALEVVADSLRSNRVSKYSWLEWDGASMSGKL 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P P ++ L+VE YS+ Sbjct: 179 LNVPER---SDIPENIKEQLIVELYSK 202 >gi|209693947|ref|YP_002261875.1| 30S ribosomal protein S4 [Aliivibrio salmonicida LFI1238] gi|226697795|sp|B6EPU8|RS4_ALISL RecName: Full=30S ribosomal protein S4 gi|208007898|emb|CAQ78028.1| 30S ribosomal protein S4 [Aliivibrio salmonicida LFI1238] Length = 206 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKDAARIKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+K + + A ++A +R+ P +I V+ M Sbjct: 119 SHKSILVNGKVVNVPSFKVSANDVVSIREKAKLQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRLPER---SDLSADINEHLIVELYSK 206 >gi|223931073|ref|YP_002586934.1| ribosomal protein S4 [Syntrichia ruralis] gi|219562287|gb|ACL27618.1| ribosomal protein S4 [Syntrichia ruralis] Length = 202 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLSNKIPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN VNI SYRCK D I + + K + + +++ +P +++ N Sbjct: 117 ILVNNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDQESIGLKINELLVVEYYSR 200 >gi|192359460|ref|YP_001981232.1| 30S ribosomal protein S4 [Cellvibrio japonicus Ueda107] gi|226697819|sp|B3PK61|RS4_CELJU RecName: Full=30S ribosomal protein S4 gi|190685625|gb|ACE83303.1| ribosomal protein S4 [Cellvibrio japonicus Ueda107] Length = 206 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L+ + K + T PG HGQRR + S +G+QLR Sbjct: 1 MARYIGPTCKLSRREGTDLFLKSGARALDSKCKIET---APGQHGQRR-GRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR +KEA R +G T NL+ LESRLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRGYYKEAARRKGATGENLLKLLESRLDNVVYRMGFGATRSESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG++VN+ S++ GDV+ V++K+K + A LA +R E++ VN Sbjct: 116 QLVSHKAISVNGKTVNVASFQVAAGDVVAVREKAKNQLRIQSALNLAGQRSNVEWVDVNT 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P V P + NL+VE YS+ Sbjct: 176 EKKEGVFKRVPDR---VDLPADINENLIVELYSK 206 >gi|227529662|ref|ZP_03959711.1| 30S ribosomal protein S4 [Lactobacillus vaginalis ATCC 49540] gi|227350452|gb|EEJ40743.1| 30S ribosomal protein S4 [Lactobacillus vaginalis ATCC 49540] Length = 220 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R+Y PG HG+ R K S +G QLR KQK++ Sbjct: 20 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRAYAPGDHGRDRHGKLSEYGTQLREKQKLRF 78 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N ++ LE RLD +VYR T ARQ VNH Sbjct: 79 MYG-MTERQFSNLFVRAGKIKEGTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHG 137 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G VI V+ KSK L + A A P Y+ + D + Sbjct: 138 HITVDGKRVDIPSYEVSVGQVIAVRDKSKNLDVIKNAVD-AVVSRPSYVDFDADKLEGKL 196 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RIP+ + +L+VEFY++ Sbjct: 197 NRIPAR---EDMDADIDESLIVEFYNK 220 >gi|294337238|emb|CAQ52768.1| ribosomal protein S4 [Porotrichodendron robustum] Length = 202 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ + +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKDQRKSEIIISKNIEFYQKSKISNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337154|emb|CAQ52727.1| ribosomal protein S4 [Homalia pennatula] Length = 202 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISQNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|49182742|gb|AAT57833.1| small ribosomal protein [Lepicolea rara] Length = 195 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKTKSSYI---DRPTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRNKEKSQSIITKNINLFQNLKIPSHLTFDSTKLCGSITQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWITLKINELLVVEYYSR 193 >gi|293400755|ref|ZP_06644900.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305781|gb|EFE47025.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 200 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 125/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G ++ + + R+Y PG HG ++ K + +GLQLR KQK++ Sbjct: 1 MSRVKGPVWKTSRRLGFSILETGEE-LQKRAYAPGQHGPTKRVKLTNYGLQLREKQKIRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F +A + +G T N ++ LESRLD +VYR F T AARQ VNH H Sbjct: 60 MYG-LNERQFHNLFVKASKMKGVTGENFLNLLESRLDNLVYRLGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G IEVK+KSK LA++ EA + V ++ V+ D T++ Sbjct: 119 ILVNGKKVDIPSFIVKPGTTIEVKEKSKNLAAINEALEACLNTV-AFVDVDKDAKKGTYL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY+R Sbjct: 178 RLPERSE---LNQEVNELLVVEFYNR 200 >gi|187476573|ref|YP_784597.1| 30S ribosomal protein S4 [Bordetella avium 197N] gi|123515214|sp|Q2L242|RS4_BORA1 RecName: Full=30S ribosomal protein S4 gi|115421159|emb|CAJ47643.1| 30S ribosomal protein S4 [Bordetella avium 197N] Length = 207 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 122/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYTGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+HR + +NG + +I S K GDVI V++ +K+ A + E+ L A +P+++ V+ Sbjct: 117 QLVSHRAIELNGHTADIASMLVKAGDVITVREGAKKQARIRESLDLAASIGIPQWVEVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M TF P + ++VVE YSR Sbjct: 177 NKMTGTFKSPPDRAD---VARDVNESMVVELYSR 207 >gi|328541090|gb|AEB21769.1| ribosomal protein S4 [Neogrollea notabilis] Length = 199 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTNKTLKPKSGYN---DRSTSNRKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHITI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NDNIVDIPSYNCQPGDFIIIRDKQKSQSIITKNFNLFQNSKIPSHLTFDSIKLYGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWIDLKINELLVVEYYSR 197 >gi|77019195|emb|CAH60203.1| chloroplast 30S ribosomal protein S4 [Grimmia pilifera] Length = 199 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NNRIVNIASYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDHESIGLKINELLVVEYYSR 197 >gi|228016979|gb|ACP51803.1| ribosomal protein S4 [Pinus banksiana] Length = 201 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRPSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|294337140|emb|CAQ52720.1| ribosomal protein S4 [Heterocladium heteropterum] Length = 202 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLR----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRPDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D I +K + K + + + ++ VP++++ + Sbjct: 116 HILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKVPDHLTYSSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|239947523|ref|ZP_04699276.1| ribosomal protein S4 [Rickettsia endosymbiont of Ixodes scapularis] gi|239921799|gb|EER21823.1| ribosomal protein S4 [Rickettsia endosymbiont of Ixodes scapularis] Length = 205 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFVLAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDVIEVK+ KQ++ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVIEVKESVKQISLIQESVSKQGQTTPGYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPA-LSDVPYPFEAEVHLVIELYSR 205 >gi|149071984|ref|YP_001293516.1| ribosomal protein S4 [Rhodomonas salina] gi|172048713|sp|A6MVT7|RR4_RHDSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|134302935|gb|ABO70739.1| ribosomal protein S4 [Rhodomonas salina] Length = 202 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+GE K+ R+ PG HG + + KPS + ++L KQK++ Sbjct: 1 MSRYRGAVVRIIRRLGELPGLTRKTT--RRNSRPGQHGDQPR-KPSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A R +G T L+ LE RLD IV+R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLRYVKDAKRIKGSTGEALLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN + V+I SY+C+ DVI V+ ++ V ++P ++ ++ + +V Sbjct: 117 ICVNAKRVSIPSYQCQTTDVISVRNNARSKQLVENYLSFPGLANIPSHLEIDKEKLVGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + L+VE+YSR Sbjct: 177 NGIIERD---WVALQLNELLIVEYYSR 200 >gi|126697668|ref|YP_001086565.1| 30S ribosomal protein S4 [Clostridium difficile 630] gi|254973759|ref|ZP_05270231.1| 30S ribosomal protein S4 [Clostridium difficile QCD-66c26] gi|255091149|ref|ZP_05320627.1| 30S ribosomal protein S4 [Clostridium difficile CIP 107932] gi|255099260|ref|ZP_05328237.1| 30S ribosomal protein S4 [Clostridium difficile QCD-63q42] gi|255305043|ref|ZP_05349215.1| 30S ribosomal protein S4 [Clostridium difficile ATCC 43255] gi|255312803|ref|ZP_05354386.1| 30S ribosomal protein S4 [Clostridium difficile QCD-76w55] gi|255515562|ref|ZP_05383238.1| 30S ribosomal protein S4 [Clostridium difficile QCD-97b34] gi|255648657|ref|ZP_05395559.1| 30S ribosomal protein S4 [Clostridium difficile QCD-37x79] gi|255654190|ref|ZP_05399599.1| 30S ribosomal protein S4 [Clostridium difficile QCD-23m63] gi|260681874|ref|YP_003213159.1| 30S ribosomal protein S4 [Clostridium difficile CD196] gi|260685472|ref|YP_003216605.1| 30S ribosomal protein S4 [Clostridium difficile R20291] gi|296449771|ref|ZP_06891540.1| 30S ribosomal protein S4 [Clostridium difficile NAP08] gi|296877835|ref|ZP_06901857.1| 30S ribosomal protein S4 [Clostridium difficile NAP07] gi|122974220|sp|Q18CI6|RS4_CLOD6 RecName: Full=30S ribosomal protein S4 gi|115249105|emb|CAJ66916.1| 30S ribosomal protein S4 [Clostridium difficile] gi|260208037|emb|CBA60237.1| 30S ribosomal protein S4 [Clostridium difficile CD196] gi|260211488|emb|CBE01627.1| 30S ribosomal protein S4 [Clostridium difficile R20291] gi|296261369|gb|EFH08195.1| 30S ribosomal protein S4 [Clostridium difficile NAP08] gi|296431135|gb|EFH16960.1| 30S ribosomal protein S4 [Clostridium difficile NAP07] Length = 207 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR G L+ + K + R+Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGASCRQCRREGMKLFLKGDRCYTDKCAIVKRNYAPGQHGQGRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR++++ A+ G NL+S LE RLD +VYR + ARQ Sbjct: 60 KQKVKRIYG-VLETQFRNLYERAENMPGKAGENLLSLLERRLDNVVYRMGLASSRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H +NG V+I S K GDVIEVK+KS+ A ++ R P+++ N + Sbjct: 119 LVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNLVEVNSRIAPKWLEANVEG 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M A V +P+ + + +L++E YS+ Sbjct: 179 MTAKVVGVPTR---EDIDLEIAEHLIIELYSK 207 >gi|6002087|emb|CAA58953.1| ribosomal protein S4 [Tradescantia virginiana] Length = 196 Score = 253 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKPRSR----SDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNH+H Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHKH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + L+ ++P++++ + Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSISLSPHEELPKHLTFDSFQHKGFV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 + ++ + + LVVE+ Sbjct: 176 NQ---TIDSKWIGLKINELLVVEY 196 >gi|46486556|gb|AAS98714.1| ribosomal protein subunit 4 [Hypnodendron vitiense] Length = 199 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K +SK A + + ++ +P +++ + +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRSKSQAIISKNIDFYQKYKIPNHLTYSSLEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|223984454|ref|ZP_03634588.1| hypothetical protein HOLDEFILI_01882 [Holdemania filiformis DSM 12042] gi|223963578|gb|EEF67956.1| hypothetical protein HOLDEFILI_01882 [Holdemania filiformis DSM 12042] Length = 211 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ KI RR+G ++ + + R+Y PG HG ++ K S +G QLR KQ+++ Sbjct: 12 MARNTGPVWKISRRLGFSILETGEE-LQRRTYAPGQHGPTKRIKLSNYGTQLREKQRIRN 70 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + + +A++ G HN + LESRLD IVYR F T AARQ VNH H Sbjct: 71 MYG-VNERQFANTYIKAEKMAGVKGHNFLCLLESRLDNIVYRMGFARTRRAARQLVNHGH 129 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G +EVK+KSK +A + +A + A + +++V+ +N T+V Sbjct: 130 ILVNGKKVDIPSFTVKPGSTVEVKEKSKSMACIADALE-ATLNTVAFVTVDKENKKGTYV 188 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y+R Sbjct: 189 RMPERNE---LNQEINELLVVEYYNR 211 >gi|68164805|ref|YP_247601.1| ribosomal protein S4 [Cucumis sativus] gi|75317263|sp|Q4VZH3|RR4_CUCSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|67511400|emb|CAJ00760.1| ribosomal protein S4 [Cucumis sativus] Length = 201 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRRPRFKKIRRLGALPGLTSKRP----KTGNDLKNQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K + K + + +++P+++++ Sbjct: 116 ILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVSLKINELLVVEYYSR 199 >gi|74316447|ref|YP_314187.1| 30S ribosomal protein S4 [Thiobacillus denitrificans ATCC 25259] gi|90101734|sp|Q3SLM5|RS4_THIDA RecName: Full=30S ribosomal protein S4 gi|74055942|gb|AAZ96382.1| ribosomal protein S4 [Thiobacillus denitrificans ATCC 25259] Length = 209 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQ+ ++ S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRAYAPGQHGQKSGARLSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR +K AD +G T NL+S LESRLD++ YR F + ARQ Sbjct: 61 KQKIRRIYG-VLEGQFRLTYKRADSRKGVTGENLLSMLESRLDSVCYRMGFGASRTEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H ++VNGR VNI SY+ + GDV+EV +KSK + A+ A R PE+I V+ Sbjct: 120 IVRHNGIVVNGRRVNIPSYQVRPGDVVEVAEKSKAQLRIKAAADATATRGYPEWIEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T+ P + P + +LVVE YS+ Sbjct: 180 ALKGTYKAHPQRSE---LPSTINESLVVELYSK 209 >gi|294337150|emb|CAQ52725.1| ribosomal protein S4 [Homalia glabella] Length = 202 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCMVDIPSYRCKPQDFITIKDQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRGSIGLKINELLVVEYYSR 200 >gi|67035688|gb|AAY62775.1| small ribosomal protein subunit 4 [Pilopogon gracilis] Length = 199 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRHVLV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHVLV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + + + +++ VP +++ N +I Sbjct: 117 NNYIVNIPSYRCKPEDFITIKNRQKSQSMIARNLEFSQKYKVPTHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LNHESIGLNINELLVVEYYSR 197 >gi|59803297|gb|AAX07757.1| Rps4 [Greeneothallus gemmiparus] Length = 199 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMKKYY 62 + KI RR+G L G + +RS G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRAKIIRRLGA-LPGLSYEMIGSRS---GYTNQLATNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++ Sbjct: 57 G-LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHII 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVR 181 VN +VNI SY CK DVI +K + + + + + L ER +P +++ + + + Sbjct: 116 VNDNAVNIPSYNCKPQDVITIKDRRESQSVITKNINLFRERKIPNHLTFDSTRFCGSVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + LVVE+YSR Sbjct: 176 IIDR---EWISLKINELLVVEYYSR 197 >gi|322719527|gb|ADX07700.1| small ribosomal protein subunit 4 [Bucklandiella sudetica] Length = 198 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ + +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIEFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|322719521|gb|ADX07697.1| small ribosomal protein subunit 4 [Racomitrium subsecundum] gi|322719523|gb|ADX07698.1| small ribosomal protein subunit 4 [Racomitrium subsecundum] gi|322719525|gb|ADX07699.1| small ribosomal protein subunit 4 [Racomitrium subsecundum] Length = 198 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NHIVNIPSYRCKPQDFITIKDRQKSQAMIMKNIDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LNRESIGLKINELLVVEYYSR 196 >gi|188584864|ref|YP_001916409.1| SSU ribosomal protein S4P [Natranaerobius thermophilus JW/NM-WN-LF] gi|226699094|sp|B2A4P9|RS4_NATTJ RecName: Full=30S ribosomal protein S4 gi|179349551|gb|ACB83821.1| SSU ribosomal protein S4P [Natranaerobius thermophilus JW/NM-WN-LF] Length = 209 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K ++ ++Y PG HG R+SK S +G+QLR Sbjct: 1 MARYQGPVCRLCRREGTKLFLKGERCYTDKCAIDKKAYAPGQHGPTRRSKQSEYGMQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E +FR F+EADR +G T L+ LE+RLD +VYR F + ARQ Sbjct: 61 KQKARRIYG-VLENQFRRYFREADRKKGITGQTLLRLLETRLDNVVYRMGFAASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 FVNH H++VNG+ VN+ SY K GD + V++KS+ + V E +LAE VPE++ +H+ Sbjct: 120 FVNHGHIMVNGKRVNVASYEVKPGDEVVVREKSRDIPRVQELKELAEGYRVPEWLEADHE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N VR P + V ++ +L+VE YSR Sbjct: 180 NFTGRVVRYPEREE---IDVPVEEHLIVELYSR 209 >gi|322719491|gb|ADX07682.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719493|gb|ADX07683.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719495|gb|ADX07684.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719497|gb|ADX07685.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719499|gb|ADX07686.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719501|gb|ADX07687.1| small ribosomal protein subunit 4 [Niphotrichum japonicum] gi|322719529|gb|ADX07701.1| small ribosomal protein subunit 4 [Racomitrium lanuginosum] gi|322719531|gb|ADX07702.1| small ribosomal protein subunit 4 [Racomitrium lanuginosum] Length = 198 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|328541030|gb|AEB21739.1| ribosomal protein S4 [Pseudocephalozia lepidozioides] Length = 199 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + KI RR+G K+P G + + K S + ++L KQK++ +Y Sbjct: 1 YRGPRVKIIRRLGALPGLTGKAPKQK----SGFNDRSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T + LE RLD + R PTI ARQ VNHRH+ Sbjct: 57 G-LTERQLLKYVRIARKAKGSTGQVSLQLLEMRLDNTILRLGMAPTIPGARQLVNHRHIS 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I ++ K K + + L + +P +++ + + + + Sbjct: 116 INKNIVDIPSYNCEPGDIITIRDKQKSQSVITRNINLFQNLKIPSHLTFDPIKLFGSINQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + + LVVE+YSR Sbjct: 176 IINR---EWINLKINELLVVEYYSR 197 >gi|49182700|gb|AAT57812.1| small ribosomal protein [Diplophyllum albicans] Length = 195 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTFKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N + Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNNT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 VDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPNHLTFDLTQLQGSVNQMVNR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWVNLKINELLVVEYYSR 193 >gi|294337242|emb|CAQ52770.1| ribosomal protein S4 [Porotrichum bigelovii] Length = 202 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+ VN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 116 HISVNDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + LVVE+YSR Sbjct: 176 VNQI---LDRESIGSKINELLVVEYYSR 200 >gi|222103424|gb|ACM44241.1| small ribosomal protein subunit 4 [Blasia pusilla] Length = 202 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K + Y L+ K S + ++L KQK++ +YG Sbjct: 5 RGPRVKIIRRLGALPGLTNKILKSKSGY---LNPSTSNKKVSQYRIRLEEKQKLRFHYG- 60 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N Sbjct: 61 ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILIN 120 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 +V+I SY CK D+I +K + K + + + ++ +P +++ + +I Sbjct: 121 NINVDIPSYNCKPKDIITIKNRQKSQSIITKNLNSFQKSKIPNHLTFDLIQFKGLVNQII 180 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 181 DR---EWINLKINELLVVEYYSR 200 >gi|167031523|ref|YP_001666754.1| 30S ribosomal protein S4 [Pseudomonas putida GB-1] gi|189045393|sp|B0KK90|RS4_PSEPG RecName: Full=30S ribosomal protein S4 gi|166858011|gb|ABY96418.1| ribosomal protein S4 [Pseudomonas putida GB-1] Length = 206 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 119 SHKAISVNGKTVNIPSYQVRPGDVVAVREKSLAQLRIVQALELCAQRGRVEWVDVDAAKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + NL+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINENLIVELYSK 206 >gi|26399104|sp|P59142|RR4_HYPCP RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504371|emb|CAC80630.1| small ribosomal protein 4 [Hypnum cupressiforme] Length = 202 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSS---INQSISNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD + +R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVTFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|317401573|gb|EFV82202.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans C54] Length = 207 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR + +NG + +I S K GDVI +++K+K+ + E+ LA +P+++ V+ Sbjct: 117 QLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIKESLDLATSIGIPQWVEVDT 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P + ++VVE YSR Sbjct: 177 TKLTGTFKSAPDRAD---VARDINESMVVELYSR 207 >gi|121609261|ref|YP_997068.1| 30S ribosomal protein S4 [Verminephrobacter eiseniae EF01-2] gi|152112272|sp|A1WK93|RS4_VEREI RecName: Full=30S ribosomal protein S4 gi|121553901|gb|ABM58050.1| SSU ribosomal protein S4P [Verminephrobacter eiseniae EF01-2] Length = 207 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS +++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIADKSKFDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F+ A+ +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFEAAESRKGNTGANLLFLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+SVNI SY K GD++ V++KSK+ + EA QLA + +P ++ VN Sbjct: 117 QLVSHKAITVNGQSVNIPSYLVKTGDLVAVREKSKKQGRIAEALQLATQVGMPAWVEVNT 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F + P + + + +L+VE YSR Sbjct: 177 EKAEGLFKKAPDRDE---FGADINESLIVELYSR 207 >gi|210623214|ref|ZP_03293653.1| hypothetical protein CLOHIR_01603 [Clostridium hiranonis DSM 13275] gi|210153751|gb|EEA84757.1| hypothetical protein CLOHIR_01603 [Clostridium hiranonis DSM 13275] Length = 207 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 11/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR G L+ + K ++ R+Y PG HGQ RK K S +G QLR Sbjct: 1 MARYTGASCRQCRREGMKLFLKGDRCYTDKCALDRRNYAPGQHGQGRK-KVSNYGEQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR++++ A++ G T NL+S LE RLD +VYR + ARQ Sbjct: 60 KQKVKRIYG-VLETQFRNLYERAEKMPGKTGANLLSLLERRLDNVVYRMGLAASRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H +NG+ V+I S GDVI VK+ SK A + R P ++ N D Sbjct: 119 LVTHAHFTLNGKKVDIPSLTVNVGDVIAVKETSKSSAKFKALVENNTRIAPNWLENNLDE 178 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M A V +P+ + + +L++E YS+ Sbjct: 179 MCAKVVSLPTR---EDIDLEIAEHLIIELYSK 207 >gi|322719505|gb|ADX07689.1| small ribosomal protein subunit 4 [Niphotrichum elongatum] Length = 198 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGVLPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|294337232|emb|CAQ52765.1| ribosomal protein S4 [Pinnatella alopecuroides] Length = 202 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D+I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337291|emb|CAQ52794.1| ribosomal protein S4 [Zelometeorium patulum] Length = 202 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 MS+ + +I RR+G K+P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN V+I SYRCK D + +K + K + + + ++ +P +++ Sbjct: 116 HILVNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKYKIPNHLTYIFLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|303328069|ref|ZP_07358508.1| ribosomal protein S4 [Desulfovibrio sp. 3_1_syn3] gi|302861895|gb|EFL84830.1| ribosomal protein S4 [Desulfovibrio sp. 3_1_syn3] Length = 208 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K +I RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTEAKCRICRREGCKLFLKGDRCFTDKCAYDRRPYAPGQHGRARK-KVSEYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E++F F++A+ +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKTRRAYG-VLERQFHGYFEKAEMQKGVTGTNLLVILERRLDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NG V I S + K GD +EV +K++++ + EA + +A R P ++ + Sbjct: 119 LVRHGIFTLNGHKVTIPSLQVKVGDSVEVPEKNRKIPVLAEAQEVIARRGCPGWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P D+ +PV L+VE YS+ Sbjct: 179 AFKGTVKALPQR-DDIQFPV--NEQLIVELYSK 208 >gi|157689410|gb|ABV65261.1| ribosomal protein S4 [Alnus viridis subsp. sinuata] Length = 197 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 9/203 (4%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K RR+G K P G L Q R SK S + ++L KQK++ +YG Sbjct: 1 RGPRFKKIRRLGALPGLTSKRP----KAGSDLRNQSRSSKKSQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN Sbjct: 56 LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 GR V+I SYRCK D+I + + K A + + R ++P+++++ +I Sbjct: 116 GRIVDIPSYRCKPHDIITARDEQKSRALIQNYLDSSPREELPKHLTLQPFQYKGLVNQII 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 S + + LVVE+YSR Sbjct: 176 DSQ---WVGLKINELLVVEYYSR 195 >gi|28194737|gb|AAO33630.1|AF480985_1 ribosomal protein S4 [Oreoweisia erosa] Length = 196 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQPTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|330833751|ref|YP_004402576.1| 30S ribosomal protein S4 [Streptococcus suis ST3] gi|329307974|gb|AEB82390.1| 30S ribosomal protein S4 [Streptococcus suis ST3] Length = 203 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRLGLATTHRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|146319810|ref|YP_001199522.1| 30S ribosomal protein S4 [Streptococcus suis 05ZYH33] gi|146322003|ref|YP_001201714.1| 30S ribosomal protein S4 [Streptococcus suis 98HAH33] gi|223933695|ref|ZP_03625671.1| ribosomal protein S4 [Streptococcus suis 89/1591] gi|253752788|ref|YP_003025929.1| 30S ribosomal protein S4 [Streptococcus suis SC84] gi|253754613|ref|YP_003027754.1| 30S ribosomal protein S4 [Streptococcus suis P1/7] gi|253756546|ref|YP_003029686.1| 30S ribosomal protein S4 [Streptococcus suis BM407] gi|172045576|sp|A4W4M5|RS4_STRS2 RecName: Full=30S ribosomal protein S4 gi|172045584|sp|A4VYD3|RS4_STRSY RecName: Full=30S ribosomal protein S4 gi|145690616|gb|ABP91122.1| 30S ribosomal protein S4 [Streptococcus suis 05ZYH33] gi|145692809|gb|ABP93314.1| 30S ribosomal protein S4 [Streptococcus suis 98HAH33] gi|223897648|gb|EEF64033.1| ribosomal protein S4 [Streptococcus suis 89/1591] gi|251817077|emb|CAZ52729.1| 30S ribosomal protein S4 [Streptococcus suis SC84] gi|251819010|emb|CAZ56857.1| 30S ribosomal protein S4 [Streptococcus suis BM407] gi|251820859|emb|CAR47625.1| 30S ribosomal protein S4 [Streptococcus suis P1/7] gi|319759206|gb|ADV71148.1| 30S ribosomal protein S4 [Streptococcus suis JS14] Length = 203 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQARRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-LGEKQFRNLFVQATKIKQGTLGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SYR + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYRVEVGQVISVREKSIKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|9651819|gb|AAF91286.1|AF234158_1 ribosomal protein subunit 4 [Dicranum scoparium] Length = 199 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD ++ R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I ++ + K A +++ +++ +P +++ + + Sbjct: 116 VNNRIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDQESIGLKINELLVVEYYSR 197 >gi|329893623|ref|ZP_08269757.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC3088] gi|328923550|gb|EGG30862.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC3088] Length = 206 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG+HG R+ + S +G+QLR Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGARALESKCKLET---APGMHG-ARRGRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I EK+FR +KEA R +G T NL+ LESRLD +VYR F T AR Sbjct: 57 EKQKVRRIYG-ILEKQFRGYYKEAARRKGATGENLLQLLESRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ VLVNG VN+ SY+ + GDV+ V++K+K+ + A LA +R E+I VN Sbjct: 116 QLVSHKGVLVNGSVVNVPSYQVQPGDVVAVREKAKKQLRIQSAVALAGQRADIEWIDVNT 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + F P + + NL+VE YS+ Sbjct: 176 DKLEGVFKARPERAE---LTSEINENLIVELYSK 206 >gi|322719533|gb|ADX07703.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719535|gb|ADX07704.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719537|gb|ADX07705.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719539|gb|ADX07706.1| small ribosomal protein subunit 4 [Grimmia pilifera] gi|322719541|gb|ADX07707.1| small ribosomal protein subunit 4 [Grimmia pilifera] Length = 198 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|294337234|emb|CAQ52766.1| ribosomal protein S4 [Pinnatella minuta] Length = 202 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLPEMRSDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D+I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|6002033|emb|CAA58924.1| ribosomal protein S4 [Butomus umbellatus] Length = 196 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + V + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKTLVQNSIASSSHEELPKHLTIDSSQHKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WVGLKINELLVVEY 196 >gi|304413169|ref|ZP_07394642.1| 30S ribosomal subunit protein S4 [Candidatus Regiella insecticola LSR1] gi|304284012|gb|EFL92405.1| 30S ribosomal subunit protein S4 [Candidatus Regiella insecticola LSR1] Length = 206 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ PG HG K + S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRTIDSKCKIDQ---PPGQHG-AHKPRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +R Sbjct: 57 EKQKVRRMYG-VLERQFRNYYKEAARLKGNTGENLLGLLEGRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNGR VNI SY+ +I +++K+K+ + + A +L +R+ P ++ V+ Sbjct: 116 QLVSHKGILVNGRVVNIASYQVLPNAIISIREKAKKQSRIRAALELFEQREKPIWLEVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + R+P P + +L+VE YS+ Sbjct: 176 AKMEGVYKRLPERTD---LPADINEHLIVELYSK 206 >gi|195979012|ref|YP_002124256.1| 30S ribosomal protein S4 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869452|ref|YP_002745400.1| 30S ribosomal protein S4 [Streptococcus equi subsp. zooepidemicus] gi|225871455|ref|YP_002747402.1| 30S ribosomal protein S4 [Streptococcus equi subsp. equi 4047] gi|226695078|sp|B4U0N4|RS4_STREM RecName: Full=30S ribosomal protein S4 gi|254764611|sp|C0MB46|RS4_STRE4 RecName: Full=30S ribosomal protein S4 gi|259495292|sp|C0MGP5|RS4_STRS7 RecName: Full=30S ribosomal protein S4 gi|195975717|gb|ACG63243.1| 30S ribosomal protein S4 RpsD [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700859|emb|CAW95600.1| 30S ribosomal protein S4 [Streptococcus equi subsp. equi 4047] gi|225702728|emb|CAX00869.1| 30S ribosomal protein S4 [Streptococcus equi subsp. zooepidemicus] Length = 203 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG +SK S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKQSRRLGLSLTGTGKE-LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR++F +A + + G N + LE RLD +VYR T ARQFVNH Sbjct: 60 SYG-MGEKQFRNLFVQATKIKEGTLGFNFMLLLERRLDNVVYRLGLATTRRQARQFVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S+R + G VI V++KS ++ ++LEA + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSFRVEIGQVISVREKSMKVPAILEAVE-ATLGRPAFVSFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY++ Sbjct: 178 TRLPERDE---INPEINEALVVEFYNK 201 >gi|330505183|ref|YP_004382052.1| 30S ribosomal protein S4 [Pseudomonas mendocina NK-01] gi|328919469|gb|AEB60300.1| 30S ribosomal protein S4 [Pseudomonas mendocina NK-01] Length = 206 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +K+A +G T NL+ LE RLD +VYR + T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKQAASQKGATGENLLQLLECRLDNVVYRMGYGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VN+ SY+ K GDV+ V++KSK + +A +L A+R E++ V+ + Sbjct: 119 SHKAISVNGQTVNVPSYQVKAGDVVAVREKSKNQLRIAQALELCAQRGRVEWVEVDAEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|328541032|gb|AEB21740.1| ribosomal protein S4 [Pseudocephalozia paludicola] Length = 199 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + K RR+G K+P G + + K S + ++L KQK++ +Y Sbjct: 1 YRGPRVKXIRRLGALPGLTGKAPKQK----SGFNDRSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T + LE RLD + R PTI ARQ VNHRH+ Sbjct: 57 G-LTERQLLKYVRIARKAKGSTGQVSLQLLEMRLDNTILRLGMAPTIPGARQLVNHRHIS 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I ++ K K + + L + +P +++ + ++ + + Sbjct: 116 INNNIVDIPSYNCEPGDIITIRDKQKSQSVITRNINLFQNSKIPSHLTFDPIKLLGSINQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I + + + LVVE+YSR Sbjct: 176 IINR---EWINLKINELLVVEYYSR 197 >gi|66990662|emb|CAI29109.1| small ribosomal protein 4 [Plagiochila strictifolia] Length = 197 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 ++ + + + LVVE+ Sbjct: 177 NQMINR---EWINLKINELLVVEY 197 >gi|239787587|emb|CAX84055.1| 30S ribosomal protein S4 [uncultured bacterium] Length = 208 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK ++ RR L+ + K + R+YGPGLHGQRR+ K S +G+ LR Sbjct: 1 MARYFGSKCRLCRREAAKLFLKGEKCYSDKCAMERRNYGPGLHGQRRR-KVSDYGVHLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ Y + EK+F + F++A R G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKIKRTYC-LLEKQFHNYFQKAARMPGVTGENLLILLERRLDNVVYRLGFSSSRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V+H+ +LVNG+ +NI SY K GD I V ++ K + A A R P ++ V+ Sbjct: 119 VVSHKQILVNGKPINICSYLVKPGDKIAVNEQCKAHLRIKAALDHAMRRSFPSWLEVDPV 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF+ P P NL+VE YS+ Sbjct: 179 AMSGTFLSFPDRAD---LPADYNENLIVELYSK 208 >gi|149390444|ref|YP_001294272.1| ribosomal protein S4 [Illicium oligandrum] gi|172048705|sp|A6MMU6|RR4_ILLOL RecName: Full=30S ribosomal protein S4, chloroplastic gi|147917397|gb|ABQ52521.1| ribosomal protein S4 [Illicium oligandrum] Length = 203 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGSLPGLTSKRPRS----GSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD--NMVA 177 +LVNGR V+I SYRCK D+I + + + A + + +++ ++P++++++ Sbjct: 116 ILVNGRLVDIPSYRCKPRDIITTRDEHRSRALIQNSIDSSQKEELPKHLTLHSLQYQYKG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 LVNQIIDSK---WVGLKINELLVVEYYSR 201 >gi|3914842|sp|O47026|RR4_ASPSB RecName: Full=30S ribosomal protein S4, chloroplastic gi|2808628|emb|CAA58922.1| ribosomal protein S4 [Asparagus maritimus] Length = 196 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNPLRSVKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQTSIASSPHEELPNHLTIDSFQYKGLI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|328541106|gb|AEB21777.1| ribosomal protein S4 [Bazzania tricrenata] Length = 198 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K+ RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 LTERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAIN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNIVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TINREWINLKINELLVVEYYSR 196 >gi|322719509|gb|ADX07691.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 198 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNISFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|77862509|gb|ABB04527.1| small ribosomal protein 4 [Asterella grollei] Length = 200 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ + Y + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 58 G-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY CK D+I +K + K + +++ ++ +P +++ + + + Sbjct: 117 INNNPVDIPSYNCKPKDLITIKDRPKSKSIIIKNLNSFQKQKIPNHLTFDLTQVKGLVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I + LVVE+YSR Sbjct: 177 IIDR---EWIFFKINELLVVEYYSR 198 >gi|322719503|gb|ADX07688.1| small ribosomal protein subunit 4 [Niphotrichum canescens] Length = 198 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + + LVVE+YSR Sbjct: 176 --LDNESIGLKINELLVVEYYSR 196 >gi|319789265|ref|YP_004150898.1| ribosomal protein S4 [Thermovibrio ammonificans HB-1] gi|317113767|gb|ADU96257.1| ribosomal protein S4 [Thermovibrio ammonificans HB-1] Length = 208 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLW------GRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + K +I RR+G N++ + KS ++ R Y PG HG+ R+ K SY+G QL Sbjct: 1 MGRYTGPKWRIARRLGVNIYVGEEKSQKGKSILDRRPYPPGQHGRSRR-KISYYGRQLME 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YYG + E++FR ++ A+R RG T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKVKYYYG-VREEQFRRFYEMAERMRGQTGENLLKLLESRLDNVVYRLGFGKSHRHARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+LVNG+ V+ SY K GDVIEVK+KS+ + + E +LA+ R +P ++ ++ + Sbjct: 119 LVVHGHILVNGKKVDRPSYLVKPGDVIEVKEKSRDIPQIKEGMELAQRRGIPSWLELDPE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N P+ + +L+VE YS+ Sbjct: 179 NFKGVVKAEPTREEIEIPIEE---HLIVELYSK 208 >gi|294337124|emb|CAQ52712.1| ribosomal protein S4 [Glossadelphus ogatae] Length = 202 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LV E+YSR Sbjct: 177 NQI---LDRESIGLKINELLVXEYYSR 200 >gi|224437308|ref|ZP_03658280.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818] gi|313143763|ref|ZP_07805956.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818] gi|313128794|gb|EFR46411.1| 30S ribosomal protein S4 [Helicobacter cinaedi CCUG 18818] Length = 208 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R YGPG HGQ+R K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQKR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++F+EA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKIMYG-VSEKQFRALFREANRQEGNTGENLVRIIEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SY K G IEVK+KSK V+ A L A+ + ++ V+ + Sbjct: 119 LVTHGHILVNGKHVDIPSYMVKPGQKIEVKEKSKNNPQVVRAIDLTAQTGIVPWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + V + ++ L+VE YS+ Sbjct: 179 KKFGIFTRFPQREEVV---IPIEERLIVELYSK 208 >gi|12642224|gb|AAK00194.1| rps4 [Entosthodon bonplandii] Length = 194 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S Q K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGVLPGLTNKTPQLRSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN Sbjct: 56 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I VK + K A + + + +++ VP +++ + +I L Sbjct: 116 VDIPSYRCKPEDFITVKNRKKSQAIITKNTYFSQKSKVPNHLTFDFTQKKGLVTQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 DRESIGLKINELLVVEYYSR 192 >gi|294337144|emb|CAQ52722.1| ribosomal protein S4 [Heterocladium procurrens] Length = 202 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIASYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + LVVE+YSR Sbjct: 177 NQI---LDRESIGSKINELLVVEYYSR 200 >gi|327402758|ref|YP_004343596.1| 30S ribosomal protein S4P [Fluviicola taffensis DSM 16823] gi|327318266|gb|AEA42758.1| SSU ribosomal protein S4P [Fluviicola taffensis DSM 16823] Length = 203 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 7/208 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG--QRRKSKPSYFGLQLRAKQKM 58 M++ K KI RR + ++G K ++ R YGPG HG +RR K S + +QL KQK Sbjct: 1 MARYTGPKSKIARRFRDPIFGPDK-ALDKRQYGPGQHGPNKRRGGKQSEYAIQLGEKQKA 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 K YG I E++F ++FK+A +G T NL+ E RLD VYR + AARQ V+H Sbjct: 60 KYTYG-ILERQFSNLFKKASGMKGITGENLLQLCEMRLDNTVYRLGIANSRRAARQLVSH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 +H++VNG VNI SY + GDV+ V++KSK L ++ + + +++ + Sbjct: 119 KHIVVNGEVVNIPSYTLRIGDVVSVREKSKSLEAITSSLTASTNKRYDWLDWDSATKSGK 178 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+ IPS P ++ L+VE YS+ Sbjct: 179 FLSIPSRD---MIPENIKEQLIVELYSK 203 >gi|67035570|gb|AAY62716.1| small ribosomal protein subunit 4 [Cynodontium strumiferum] Length = 199 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S ++ K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---INQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKQGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQELIGLKINELLVVEYYSR 197 >gi|322719573|gb|ADX07723.1| small ribosomal protein subunit 4 [Grimmia ovalis] gi|322719575|gb|ADX07724.1| small ribosomal protein subunit 4 [Grimmia ovalis] gi|322719577|gb|ADX07725.1| small ribosomal protein subunit 4 [Grimmia ovalis] gi|322719579|gb|ADX07726.1| small ribosomal protein subunit 4 [Grimmia ovalis] Length = 198 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NHIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMNFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|150025382|ref|YP_001296208.1| 30S ribosomal protein S4 [Flavobacterium psychrophilum JIP02/86] gi|172048611|sp|A6GZ74|RS4_FLAPJ RecName: Full=30S ribosomal protein S4 gi|149771923|emb|CAL43397.1| 30S ribosomal protein S4 [Flavobacterium psychrophilum JIP02/86] Length = 201 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ +I R+ GE ++G KS R+Y PG HG +++ K S F +QL KQK K Sbjct: 1 MARYTGPSTRIARKFGEAIFGDDKS-FEKRNYPPGQHGMAKKRGKKSEFAIQLMEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG I EK+FR +FK+A S+G T L+ E+RLD +VYR PT AARQ V+HR Sbjct: 60 YSYG-ILEKQFRGLFKKAAASKGVTGEILLQLCEARLDNVVYRMGIAPTRRAARQIVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV VNG VN+ SY K GD + V++KSK L ++ + + V E+I+ N M TF Sbjct: 119 HVTVNGELVNVPSYHLKPGDKVAVREKSKSLEAIDRSLSNSSH-VYEWITWNTAQMEGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P+ L+ P ++ L+VE Y++ Sbjct: 178 VSVPARLQ---IPENIKEQLIVELYNK 201 >gi|255970731|ref|ZP_05421317.1| 30S ribosomal protein S4 [Enterococcus faecalis T1] gi|255974305|ref|ZP_05424891.1| 30S ribosomal protein S4 [Enterococcus faecalis T2] gi|256761099|ref|ZP_05501679.1| 30S ribosomal protein S4 [Enterococcus faecalis T3] gi|255961749|gb|EET94225.1| 30S ribosomal protein S4 [Enterococcus faecalis T1] gi|255967177|gb|EET97799.1| 30S ribosomal protein S4 [Enterococcus faecalis T2] gi|256682350|gb|EEU22045.1| 30S ribosomal protein S4 [Enterococcus faecalis T3] Length = 208 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 6 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRH 64 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 65 MYG-MNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KS+ ++++ EA + A P ++S + + + +F Sbjct: 124 HITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVE-ATVGRPAFVSFDTEKLEGSF 182 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P D YP + LVVE+Y Sbjct: 183 TRLPER--DELYP-EIDEALVVEYY 204 >gi|104779779|ref|YP_606277.1| 30S ribosomal protein S4 [Pseudomonas entomophila L48] gi|152112249|sp|Q1IFU2|RS4_PSEE4 RecName: Full=30S ribosomal protein S4 gi|95108766|emb|CAK13460.1| 30S ribosomal protein S4 [Pseudomonas entomophila L48] Length = 206 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQAAASKKGATGENLLQMLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 119 SHKAISVNGKTVNIPSYQVRPGDVVSVREKSLNQLRIVQALELCAQRGRVEWVDVDAAKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + NL+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINENLIVELYSK 206 >gi|62288923|sp|P69629|RR4_AGABR RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288953|sp|P69679|RR4_YUCFI RecName: Full=30S ribosomal protein S4, chloroplastic gi|2808626|emb|CAA58916.1| ribosomal protein S4 [Agave bracteosa] gi|2808632|emb|CAA58955.1| ribosomal protein S4 [Yucca filamentosa] Length = 196 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRPRS----GSDLKNPLRSVKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHEELPNHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|48527353|gb|AAT45809.1| small ribosomal protein 4 [Plagiochila arbuscula] Length = 202 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIIIIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLRVSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---ELIDLKINELLVVEYYSR 200 >gi|194335471|ref|YP_002017265.1| ribosomal protein S4 [Pelodictyon phaeoclathratiforme BU-1] gi|226699099|sp|B4SBX3|RS4_PELPB RecName: Full=30S ribosomal protein S4 gi|194307948|gb|ACF42648.1| ribosomal protein S4 [Pelodictyon phaeoclathratiforme BU-1] Length = 203 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 119/207 (57%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALAPKAEKYLERRPFPPGQHGQGRKGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V H H Sbjct: 61 LYG-ILEKQFRNYYKKAVSQRGVTGDNLVKLLERRFDNVVFRAGFAPSRSGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +L+NG+ V+I SY +VIE +Q+SK + +V ++ A E +P +I V+ N A F Sbjct: 120 LLINGKKVDIPSYIVSPSEVIEFRQRSKNMGAVTDSLNKAPESRIPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P V LVVE YS+ Sbjct: 180 LSVPER---VEVQEPFNEQLVVELYSK 203 >gi|89891131|ref|ZP_01202639.1| 30S ribosomal protein S4 [Flavobacteria bacterium BBFL7] gi|89516775|gb|EAS19434.1| 30S ribosomal protein S4 [Flavobacteria bacterium BBFL7] Length = 201 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 126/207 (60%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI RR E ++G P + ++Y PG+HG RR+ K S + +QL+ KQK K Sbjct: 1 MARYRGPKAKIARRFREPIFG-PSKALEKKNYPPGMHGNARRRGKESEYAVQLKEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+FR +F++A RS G T L+ ESRLD +VYR T ARQ V+HR Sbjct: 60 YTYG-VLEKQFRLMFEKAVRSTGITGEVLLQLCESRLDNVVYRMGIAKTRRGARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY+ K GDV+ V++KSK L+++ ++ + V ++I+ N +M TF Sbjct: 119 HMTVNGELVNIPSYQLKPGDVVAVREKSKSLSAIDQSLS-SNEHVYDFITFNKASMSGTF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P L+ P ++ L+VE YS+ Sbjct: 178 VSVPERLQ---IPENIKEQLIVELYSK 201 >gi|325282667|ref|YP_004255208.1| ribosomal protein S4 [Deinococcus proteolyticus MRP] gi|324314476|gb|ADY25591.1| ribosomal protein S4 [Deinococcus proteolyticus MRP] Length = 206 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 83/210 (39%), Positives = 120/210 (57%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M + S K RR G NL K ++ R Y PG HGQRR + +PS + ++LR KQK Sbjct: 1 MGRFSGSIVKQSRREGINLAETEKVQKYLDRRPYAPGQHGQRRGRGRPSDYSVRLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + + YG ++EK+FR++F+EA R G + LE RLD +V+R F T ARQFV Sbjct: 61 LSRLYG-MNEKQFRNLFEEATRQPGVLGTVFLQLLERRLDNVVFRMGFASTRRQARQFVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE-YISVNHDNMV 176 H H+LVNG+ V+I SYR K GD I V +KS+ + V E + +R P ++ VN + Sbjct: 120 HGHILVNGKKVDIASYRVKIGDEITVAEKSRSMGFVQENMEAMKRRRPSPWLEVNAETFT 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P+ + + N ++E+YSR Sbjct: 180 GTFNRLPAR---EDLALPINENFIIEYYSR 206 >gi|110456717|gb|ABG74820.1| ribosomal protein S4 [Jasminum subhumile] Length = 203 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP G L Q R K S + ++L KQK+ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKSP----KAGSDLRKQSRSRKKSQYRIRLEEKQKLCF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG + E + + A +++G T L+ LE RLD I++R TI AARQ V HRH Sbjct: 57 HYG-LREYQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVTHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+ SYRCK D+I K K + + + +++P +++++ Sbjct: 116 ILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTLIQNSLDSSPHKELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|37523141|ref|NP_926518.1| 30S ribosomal protein S4 [Gloeobacter violaceus PCC 7421] gi|41017822|sp|Q7NFF4|RS4_GLOVI RecName: Full=30S ribosomal protein S4 gi|35214144|dbj|BAC91513.1| 30S ribosomal protein S4 [Gloeobacter violaceus PCC 7421] Length = 206 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 118/213 (55%), Gaps = 14/213 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ R +G L+ + PK + R++ PG+HGQ R K S + ++L+ Sbjct: 1 MARYTGPVCKLCRAVGMKLYLKGIRCSSPKCAIERRNFRPGVHGQAR-QKLSEYAIRLKE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG + EK+FR F +A R+ G+T + LE RLD +VYR F + ARQ Sbjct: 60 KQKARWSYG-VLEKQFRRTFSDASRATGNTGAKFLELLERRLDNVVYRLGFATSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHD 173 +VNH H VNGR V+I SYR + GD I V S A V EA + A P+++ N + Sbjct: 119 WVNHGHFAVNGRRVSIPSYRVRPGDAITVMPNSA--AFVKEALEAASLPQAPKWLEANRE 176 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + AT +P +D+ PV Q L+VEFYSR Sbjct: 177 TLAATVKALPER-EDIDTPV--QELLIVEFYSR 206 >gi|308069706|ref|YP_003871311.1| 30S ribosomal protein S4 [Paenibacillus polymyxa E681] gi|305858985|gb|ADM70773.1| 30S ribosomal protein S4 [Paenibacillus polymyxa E681] Length = 199 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGANQRRKISNYGMQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A G N + LESRLD +V+R F + ARQ V H H Sbjct: 59 MYG-LGEKQFRTLFNKAQHMHGIAGENFMFLLESRLDNLVFRLGFANSRAGARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY+ GDVI ++++S+ L+S+ EA + + Y+ N + F+ Sbjct: 118 VTVNGKKVDIASYQVSPGDVIGLRERSRSLSSIKEALE-NRNHLVAYLEYNDAALEGKFI 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFY+R Sbjct: 177 RLPERGE---LSQDIDEKQIVEFYNR 199 >gi|15807121|ref|NP_295850.1| 30S ribosomal protein S4 [Deinococcus radiodurans R1] gi|26399534|sp|Q9RSJ7|RS4_DEIRA RecName: Full=30S ribosomal protein S4 gi|6459925|gb|AAF11677.1|AE002047_10 ribosomal protein S4 [Deinococcus radiodurans R1] Length = 205 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + S K RR G NL K ++ R YGPG HGQRRK +PS + ++LR KQK+ Sbjct: 1 MGRFRGSITKQSRREGINLAETEKVQKYLDRRPYGPGQHGQRRKGRPSDYSVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG ++EK+FR++F+EA G T + LE RLD +V+R F T ARQFV H Sbjct: 61 ARLYG-MNEKQFRNLFEEASNVPGVTGTVFLQLLERRLDNVVFRMGFASTRRQARQFVGH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVA 177 H+LVNG+ V+I SYR K GD I V + S+ + + E R V +I ++ DN Sbjct: 120 GHILVNGKKVDIASYRVKIGDEISVAEGSRSMGFIQENMDAQKRRRVSPWIEMDQDNFKG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P+ + + N ++E+YSR Sbjct: 180 TFSRLPAR---EDLALPINENFIIEYYSR 205 >gi|46486590|gb|AAS98731.1| ribosomal protein subunit 4 [Mniodendron fuscomucronatum] Length = 199 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G L K+ G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGALLGLTNKTAQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNHVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K A + + ++ +P +++ + + Sbjct: 116 VNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKYKIPNHLTYSSLEKKGFVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|67035682|gb|AAY62772.1| small ribosomal protein subunit 4 [Leucobryum crispum] Length = 197 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + K S + ++L KQK++ +YG I Sbjct: 1 GPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 VNI SYRCK D I +K + K + V + + +++ VP +++ + +I Sbjct: 117 YIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKYKVPNHLTFDSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + + LVVE+YSR Sbjct: 175 -LNNESIGLKINELLVVEYYSR 195 >gi|63101097|gb|AAY33173.1| small ribosomal protein 4 [Ptychomitrium gardneri] Length = 202 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ +NHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLSMAPTIPGARQLINHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A V++ ++ VP +++ N + Sbjct: 119 VNNRIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQNYKVPNHLTFNSLEKKGLVNQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 179 I---LDHGSIGLKINELLVVEYYSR 200 >gi|331004909|ref|ZP_08328325.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC1989] gi|330421296|gb|EGG95546.1| SSU ribosomal protein S4p (S9e) [gamma proteobacterium IMCC1989] Length = 205 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 15/213 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L+ + K + T PG+HG R+ + S +G+QLR Sbjct: 1 MARYLGPTCKLARREGTDLFLKSGVRSLDSKCKLET---APGVHG-VRRGRLSDYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +KEA R +G T NL+ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRTYG-VLEKQFRAYYKEAARRKGATGENLLKLLETRLDNVVYRMGFGSTRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHD 173 Q V+H+ +LVNG +VNI SY+ K DVI +++K+K + A LA + E++ V+ Sbjct: 116 QLVSHKSILVNGSTVNIPSYQVKAEDVISIREKAKNQLRIKSALDLAAQRDVEWVEVSAA 175 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T R+P P + NL+VE YS+ Sbjct: 176 KLEGTLKRVPDR---EDLPAEINENLIVELYSK 205 >gi|152993918|ref|YP_001359639.1| 30S ribosomal protein S4 [Sulfurovum sp. NBC37-1] gi|172048747|sp|A6QCS3|RS4_SULNB RecName: Full=30S ribosomal protein S4 gi|151425779|dbj|BAF73282.1| 30S ribosomal protein S4 [Sulfurovum sp. NBC37-1] Length = 208 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 88/213 (41%), Positives = 131/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +++RR+G +L + KS + R Y PG HGQRR +K S +GLQL+ Sbjct: 1 MARYRGPVERLERRLGVDLGLKGERRLAGKSALEKRPYAPGQHGQRR-TKISEYGLQLQE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG SEK+FR+++KEA+R G+T LI LE RLD +VYR F T +ARQ Sbjct: 60 KQKAKFMYGT-SEKQFRALYKEANRKEGNTGSILIQLLEQRLDNVVYRMGFATTRASARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 FVNH HVLV+G+ V+I SYR K G IE+++KSK + +L A +L + + E++ V+ + Sbjct: 119 FVNHGHVLVDGKRVDIPSYRVKAGQKIEIREKSKTNSQILRAIELTNQTGMVEWVDVDKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P + + ++ L+VE YS+ Sbjct: 179 KLFGIFSRVPEREE---IAIPVEERLIVELYSK 208 >gi|322719469|gb|ADX07671.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719471|gb|ADX07672.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719473|gb|ADX07673.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719475|gb|ADX07674.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719477|gb|ADX07675.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] gi|322719479|gb|ADX07676.1| small ribosomal protein subunit 4 [Racomitrium anomodontoides] Length = 198 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKAPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NLIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|222103480|gb|ACM44269.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 202 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 5 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 60 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 61 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 120 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 121 NRIVNIPSYRCKPQDFITIKDRQKSQAMIMKNIYFSQKYKIPNHLTFNSLENKGLINQI- 179 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 --LDHESIGLKINELLVVEYYSR 200 >gi|5911470|emb|CAA58930.1| ribosomal protein S4 [Delphinium staphisagria] Length = 196 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGVLPGLTSKRP----TPGSDLRNQSRFGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K + + ++P++++++ + Sbjct: 116 ILVNGRIVDIPSYRCKARDIITTRDEQKSKVLIQNYLDSSPHEELPKHLTLHASQYKGSV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WVGLKINELLVVEY 196 >gi|63191859|gb|AAY34889.1| small ribosomal protein subunit 4 [Pseudosymblepharis guatemalensis] Length = 199 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P + Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKTPHLKSNS----TNQSNSTKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K + + ++ +P +++ N + Sbjct: 116 VNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKSKIPNHLTFNSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDQELIGLKINELLVVEYYSR 197 >gi|92417449|gb|ABE76820.1| ribosomal protein subunit 4 [Pellia epiphylla] Length = 199 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ SY + K S + ++L KQK++ +YG Sbjct: 1 YRGPRAKIIRRLGALPGLTSKTLKLESSYI---NQSTPNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH H+++ Sbjct: 58 -LTERQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHGHIVI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N +V+I SY C+ DVI +K ++K + + + + +P +++ + + + Sbjct: 117 NDYTVDIPSYNCEPRDVITIKNRNKSQSLITKNIDSFRKPKIPNHLTFDFTKFRGSVNQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TIDRECIDLKINELLVVEYYSR 197 >gi|157803917|ref|YP_001492466.1| 30S ribosomal protein S4 [Rickettsia canadensis str. McKiel] gi|172045657|sp|A8EZ98|RS4_RICCK RecName: Full=30S ribosomal protein S4 gi|157785180|gb|ABV73681.1| 30S ribosomal protein S4 [Rickettsia canadensis str. McKiel] Length = 205 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K N R+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNIRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR+IF+ A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNIFELAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDV+EVK+ KQ+A + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVVEVKESIKQIALIQESILKQGQTTPNYLSFDVPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPN-LSDVPYPFEAEVHLVIELYSR 205 >gi|90416840|ref|ZP_01224769.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2207] gi|90331187|gb|EAS46431.1| 30S ribosomal protein S4 [marine gamma proteobacterium HTCC2207] Length = 206 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS---YGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + P+ ++ PG HGQRR + S +G+QLR KQ Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLESKCRADSAPGQHGQRR-GRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +++A R +G+T NL++ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYRDAARQKGNTGENLLTLLERRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 H ++VNG+ VNI S++ +EGDV+ +++KSK+ V A QL A+R E+++V+ M Sbjct: 119 AHNSIVVNGQKVNIPSFKVQEGDVVGLREKSKKQLRVQTALQLAAQRGEVEWMNVDSSKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P P + NL+VE YS+ Sbjct: 179 EGTFTRNPDR---SDLPAEINENLIVELYSK 206 >gi|63078575|gb|AAY29374.1| ribosomal protein S4 [Hyophila involuta] Length = 197 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S+ + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSF---TNQSSSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYIRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKSIIPNHLTFNFLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|294337148|emb|CAQ52724.1| ribosomal protein S4 [Himantocladium plumula] Length = 202 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLINKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SY+CK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|323404246|gb|ADX62377.1| small ribosomal protein subunit 4 [Schistidium liliputanum] Length = 198 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSLI---NQSTSSKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|294337120|emb|CAQ52710.1| ribosomal protein S4 [Glossadelphus baldwinii] Length = 202 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNRRKSETIISKNIEFYQKSKIPNHLTYSFLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 NEI---LDRESIGLKINELLVVEYYSR 200 >gi|67035572|gb|AAY62717.1| small ribosomal protein subunit 4 [Hymenolomopsis tolucensis] Length = 196 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|18311359|ref|NP_563293.1| 30S ribosomal protein S4 [Clostridium perfringens str. 13] gi|110801306|ref|YP_697066.1| 30S ribosomal protein S4 [Clostridium perfringens ATCC 13124] gi|168215204|ref|ZP_02640829.1| ribosomal protein S4 [Clostridium perfringens CPE str. F4969] gi|168216659|ref|ZP_02642284.1| ribosomal protein S4 [Clostridium perfringens NCTC 8239] gi|182626935|ref|ZP_02954668.1| ribosomal protein S4 [Clostridium perfringens D str. JGS1721] gi|26399584|sp|Q8XHV0|RS4A_CLOPE RecName: Full=30S ribosomal protein S4 A gi|123049591|sp|Q0TMS4|RS4A_CLOP1 RecName: Full=30S ribosomal protein S4 A gi|18146043|dbj|BAB82083.1| 30S ribosomal protein S4 [Clostridium perfringens str. 13] gi|110675953|gb|ABG84940.1| 30S ribosomal protein S4 [Clostridium perfringens ATCC 13124] gi|170713408|gb|EDT25590.1| ribosomal protein S4 [Clostridium perfringens CPE str. F4969] gi|177907725|gb|EDT70340.1| ribosomal protein S4 [Clostridium perfringens D str. JGS1721] gi|182381248|gb|EDT78727.1| ribosomal protein S4 [Clostridium perfringens NCTC 8239] Length = 206 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 VNH H LVNG+ V+I S++ DVI V +KS+ ++ + +P+++ N +N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDVITVCEKSRGSERFKMFAENP-KALPKWLEANVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V P+ +D+ PV L+VE YS+ Sbjct: 178 FEGKVVAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|26987219|ref|NP_742644.1| 30S ribosomal protein S4 [Pseudomonas putida KT2440] gi|148545763|ref|YP_001265865.1| 30S ribosomal protein S4 [Pseudomonas putida F1] gi|37999419|sp|Q88QL2|RS4_PSEPK RecName: Full=30S ribosomal protein S4 gi|172048431|sp|A5VXS1|RS4_PSEP1 RecName: Full=30S ribosomal protein S4 gi|24981858|gb|AAN66108.1|AE016239_3 ribosomal protein S4 [Pseudomonas putida KT2440] gi|148509821|gb|ABQ76681.1| SSU ribosomal protein S4P [Pseudomonas putida F1] gi|313496843|gb|ADR58209.1| RpsD [Pseudomonas putida BIRD-1] Length = 206 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRALESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR ++ A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFRGYYQAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRSESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VNI SY+ + GDV+ V++KS +++A +L A+R E++ V+ Sbjct: 119 SHKAISVNGKTVNIPSYQVRPGDVVAVREKSLGQLRIVQALELCAQRGRVEWVDVDAAKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + NL+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINENLIVELYSK 206 >gi|296131863|ref|YP_003639110.1| ribosomal protein S4 [Thermincola sp. JR] gi|296030441|gb|ADG81209.1| ribosomal protein S4 [Thermincola potens JR] Length = 208 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K ++ R Y PG+HGQ RK K S +G+QLR Sbjct: 1 MARYTGPVCRLCRREGAKLYLKGDRCYSDKCAIDRRGYAPGMHGQGRK-KISEYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + EK+FR+ F +ADR G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKARRIYG-VLEKQFRNYFAKADRQPGVTGENLLRLLERRLDNVVYRLGFASSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H VN + VNI SY K GDVI++K+KS +L + E + A + P ++ ++ D Sbjct: 119 LVRHGHFTVNDKKVNIPSYSLKVGDVIKIKEKSLELPRIKELLEQAAHKTPPAWLELDVD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + V IPS + V ++ +L+VE YSR Sbjct: 179 QHLGKVVAIPSREE---IDVPIEEHLIVELYSR 208 >gi|285017343|ref|YP_003375054.1| 30s ribosomal protein s4 [Xanthomonas albilineans GPE PC73] gi|283472561|emb|CBA15066.1| probable 30s ribosomal protein s4 [Xanthomonas albilineans] Length = 209 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 78/216 (36%), Positives = 117/216 (54%), Gaps = 17/216 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQR-RKSKPSYFGLQL 52 M++ K+ RR G +L + K + + PG HG RK K S + QL Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQK---PGQHGATARKGKLSDYATQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+K+ Y + E++FR+ +K+A +G+T NL+ LE+RLD +VYR F T AA Sbjct: 58 REKQKVKRIYC-LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD--VPEYISV 170 RQ V+HR VLVNG+SVN+ SY+ K GD I + +K+++ V EA +A+ P ++ V Sbjct: 117 RQLVSHRGVLVNGKSVNLASYQVKAGDAIALSEKAQKQLRVQEALSVADTHDLTPSWVEV 176 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P P + L+VE YS+ Sbjct: 177 DSKKFSGIFKAVPDRAD---LPADINEALIVELYSK 209 >gi|294337216|emb|CAQ52757.1| ribosomal protein S4 [Neckera remota] Length = 202 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|94985941|ref|YP_605305.1| 30S ribosomal protein S4 [Deinococcus geothermalis DSM 11300] gi|152060945|sp|Q1IX98|RS4_DEIGD RecName: Full=30S ribosomal protein S4 gi|94556222|gb|ABF46136.1| ribosomal protein S4 [Deinococcus geothermalis DSM 11300] Length = 206 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M + S K+ RR G NL K ++ R Y PG HGQRR + +PS + ++LR KQK Sbjct: 1 MGRFRGSITKLSRREGINLAETEKVQKYLDRRPYAPGQHGQRRGRGRPSDYSVRLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + + YG ++EK+FR++F+EA G T + LE RLD +V+R F T ARQFV Sbjct: 61 LARLYG-VNEKQFRNLFEEAANVPGVTGTVFLQLLERRLDNVVFRMGFASTRRQARQFVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMV 176 H H+LVNG+ V+I SYR + GD I V + S+ + + E + R V +I +N D Sbjct: 120 HGHILVNGKRVDIPSYRVRIGDEISVAEGSRSMGFIQENMEAQKRRRVSPWIELNPDTFT 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TFVR+P+ + + N ++E+YSR Sbjct: 180 GTFVRLPAR---EDLALPINENFIIEYYSR 206 >gi|294337283|emb|CAQ52790.1| ribosomal protein S4 [Trachyloma planifolium] Length = 202 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K A + + + ++ +P ++ + Sbjct: 117 ILVNDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLIYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIDLKINELLVVEYYSR 200 >gi|37992475|gb|AAR06416.1| small ribosomal protein 4 [Cyathophorum bulbosum] Length = 199 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---TQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMFPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG V+I SY+CK D I +K + K A + + + ++ +P +++ N+ +I Sbjct: 117 NGSIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKYKIPNHLTYNYLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103498|gb|ACM44278.1| small ribosomal protein subunit 4 [Hylocomium splendens] Length = 203 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 10/206 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKY 61 + + +I RR+G K+P G Q K S + ++L KQK++ + Sbjct: 4 RYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFH 59 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+ Sbjct: 60 YG-ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHI 118 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 119 LVNDYIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVN 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 179 QI---LDRESIGLKINELLVVEYYSR 201 >gi|67035592|gb|AAY62727.1| small ribosomal protein subunit 4 [Rhamphidium dicranoides] Length = 199 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---SNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + + A +L+ +++ +P +++ N +I Sbjct: 117 NDHIVNIPSYRCKPQDFITIKDRQESQAMILKNIDFSQKSKIPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|291296964|ref|YP_003508362.1| 30S ribosomal protein S4 [Meiothermus ruber DSM 1279] gi|290471923|gb|ADD29342.1| ribosomal protein S4 [Meiothermus ruber DSM 1279] Length = 205 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + K+ R +G N+ K ++ R Y PG HGQ+RK +PS F ++LR KQK+ Sbjct: 1 MGRYRGPIVKVARHLGVNIAETEKVQKYLDRRPYAPGQHGQKRKGRPSDFAVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + Y D+SE +FR++F+EA R +G T + LESRLD +V+R T ARQFV H Sbjct: 61 RFIY-DVSETQFRNLFEEASRKKGVTGTVFLQLLESRLDNVVFRMGIASTRRQARQFVRH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVA 177 H+LVNG+ VNI YR + GD I+V +K+K++ +++ + R ++ N D M Sbjct: 120 GHILVNGKRVNIPGYRVRPGDEIKVSEKAKKIDFIVQNVERFKNRKSFPWLEFNADTMTG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P + + LV+EFYSR Sbjct: 180 RFLRLPER---EMLSLPVNEQLVIEFYSR 205 >gi|78357275|ref|YP_388724.1| 30S ribosomal protein S4 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|90101689|sp|Q30Z67|RS4_DESDG RecName: Full=30S ribosomal protein S4 gi|78219680|gb|ABB39029.1| SSU ribosomal protein S4P [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 208 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K SK +I RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDSKCRICRREGGKLFLKGDRCYTDKCAFDRRPYAPGQHGRARK-KNSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+F S F +AD S+G T NL+S LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRMYG-LLEKQFHSYFVKADMSKGVTGSNLLSILERRLDNVIYRLGFANSRSQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H VNGR I S + K GDVIEV++K++++ + EA + +A R P ++ + Sbjct: 119 MVRHGIFTVNGRKATIPSIQVKVGDVIEVREKNRKMPVIAEAQEVIARRGCPSWLEADGP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P +D+ +P M L+VE YS+ Sbjct: 179 NFRGVVKALPQR-EDIQFP--MSEQLIVELYSK 208 >gi|49182724|gb|AAT57824.1| small ribosomal protein [Herzogobryum teres] Length = 195 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G + K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGASPGLTSKTLKSKSSYI---DRSASNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH H+ VN + Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMTPTIPGARQLVNHGHISVNNDT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ + + +++ + L ++ +P +++ + + + ++ + Sbjct: 117 VDIPSYNCEPGDIITIRNRQRSQSTITKNLNLFQKSKIPSHLTFDLTQLQGSVNQMVNR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWVNLKINELLVVEYYSR 193 >gi|322719559|gb|ADX07716.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719561|gb|ADX07717.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719563|gb|ADX07718.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719565|gb|ADX07719.1| small ribosomal protein subunit 4 [Schistidium strictum] gi|322719569|gb|ADX07721.1| small ribosomal protein subunit 4 [Schistidium apocarpum] gi|323404242|gb|ADX62375.1| small ribosomal protein subunit 4 [Schistidium trichodon] gi|323404244|gb|ADX62376.1| small ribosomal protein subunit 4 [Schistidium trichodon] gi|323404248|gb|ADX62378.1| small ribosomal protein subunit 4 [Schistidium trichodon var. nutans] Length = 198 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSLI---NQSTSSKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|228470684|ref|ZP_04055535.1| ribosomal protein S4 [Porphyromonas uenonis 60-3] gi|228307541|gb|EEK16537.1| ribosomal protein S4 [Porphyromonas uenonis 60-3] Length = 201 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE ++G K ++ ++Y PG HG R+ K S + LQLR KQ K Sbjct: 1 MARYIGPKSKIARKFGEPIFGADKV-LSKKNYPPGQHGNNRRRKQSEYALQLREKQMAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR++F++A R+ G T L+ LESRLD +V+R PT AARQ V+HRH Sbjct: 60 TYG-VLERQFRNLFEKAQRTSGITGEILLQLLESRLDNVVFRLGIAPTRAAARQLVSHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G VNI SY K G ++ V+++ K + + ++ ++ + ++ Sbjct: 119 IVVDGEVVNIPSYTLKPGQIVGVRERDKSMEVIADSLAGYNHSKYPWLEWDARTYSGKYL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ + P ++ L+VE YS+ Sbjct: 179 NVPTREE---IPEPIKEQLIVELYSK 201 >gi|6002049|emb|CAA58934.1| ribosomal protein S4 [Elettaria cardamomum] Length = 196 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRPRS----GSDPKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGIASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K K + A + + L+ ++P++++ + Sbjct: 116 ILVNGGIVDIPSYRCKPRDIITTKDKQRSKALIKNSISLSPHEELPKHLTFDSFQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIVDSK---WIGLKINELLVVEY 196 >gi|67035761|gb|AAY62811.1| small ribosomal protein subunit 4 [Sehnemobryum paraguense] Length = 201 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVKIIRRLGVLPGLTNKTPQLKSSPA---NQSTSNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH++ Sbjct: 59 G-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTISGARQLVNHRHII 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K + + ++ +P +++ N + Sbjct: 118 VNNRIVNIPSYRCKPQDFITIKNRQKSQDIITKNINFNQKYKIPNHLTYNSLEKKGFVNQ 177 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 178 I---LDRELINLKINELLVVEYYSR 199 >gi|298531061|ref|ZP_07018462.1| ribosomal protein S4 [Desulfonatronospira thiodismutans ASO3-1] gi|298509084|gb|EFI32989.1| ribosomal protein S4 [Desulfonatronospira thiodismutans ASO3-1] Length = 208 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ SK ++ RR G L + K R+Y PG HG+ RK K S + LQLR Sbjct: 1 MARYTDSKCRLCRREGTKLLLKGDRCYTDKCAYERRAYPPGEHGRARK-KSSDYALQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +F+ F+ AD +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRMYG-LLEGQFKRYFEIADSRKGATGTNLLVMLERRLDNVVYRMGFANSRSQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H +NG VN+ S KEGDVI V +KS+++ + +A LA R P+++ +N Sbjct: 119 LVRHGHFHINGTRVNVPSILLKEGDVIGVIEKSRKMPVIQDARDVLARRGSPDWLEINDQ 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ +D+ +P + L+VE YS+ Sbjct: 179 EFKGTVKTLPAR-EDITFP--INEQLIVELYSK 208 >gi|228016343|gb|ACP51177.1| ribosomal protein S4 [Pinus taeda] Length = 201 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK+ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLHF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|328541118|gb|AEB21783.1| ribosomal protein S4 [Acromastigum anisostomum] Length = 197 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ + SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGALPGLTSKTLKSKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNH H+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + +I + Sbjct: 117 NIVDIPSYNCELGDIITIRDKEKSQSIITKNINLFQNLKIPSHLTFDLIKLCGSINQIVN 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + L+VE+YSR Sbjct: 177 R---ESIDLKINELLIVEYYSR 195 >gi|67035608|gb|AAY62735.1| small ribosomal protein subunit 4 [Cladophascum gymnomitrioides] Length = 199 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQAMITKNVDFSQKYKVPNHLTFNFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|3098180|gb|AAC15538.1| small ribosomal protein 4 [Mielichhoferia elongata] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQSLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 NDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|67035636|gb|AAY62749.1| small ribosomal protein subunit 4 [Sclerodontium pallidum] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGT-LPGLTNKIPELKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGIAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K +++ + +++ VP +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKSKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|297567257|ref|YP_003686229.1| 30S ribosomal protein S4 [Meiothermus silvanus DSM 9946] gi|296851706|gb|ADH64721.1| ribosomal protein S4 [Meiothermus silvanus DSM 9946] Length = 205 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + KI RR+G N+ K ++ R Y PG HGQ+R +PS + ++LR KQK+ Sbjct: 1 MGRYRGPIVKIARRLGVNIAETEKVQKYLDRRPYAPGQHGQKRARRPSDYAVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + Y D+ E+ FR++F+EA + +G T + LESRLD +V+R T ARQFV H Sbjct: 61 RFIY-DMGERSFRNLFEEASKKKGVTGTVFLQLLESRLDNVVFRLGIASTRRQARQFVRH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVA 177 H+LVNG+ VNI YR K+GD I V +K++ + + E + R ++ + M Sbjct: 120 GHILVNGKRVNIAGYRVKQGDTIAVSKKAQDIPFIKENIERFKNRKTFRWLEFDPTTMSG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F+R+P +D+ PV NLV+EFYSR Sbjct: 180 KFLRLPDR-EDLALPV--NENLVIEFYSR 205 >gi|67035604|gb|AAY62733.1| small ribosomal protein subunit 4 [Campylopodium euphorocladum] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDCITIKDRQKSQAMITKNVDFSQKYKVPNHLTFNFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIDLKINELLVVEYYSR 197 >gi|86148804|ref|ZP_01067071.1| 30S ribosomal protein S4 [Vibrio sp. MED222] gi|148982227|ref|ZP_01816653.1| 30S ribosomal protein S4 [Vibrionales bacterium SWAT-3] gi|218710725|ref|YP_002418346.1| 30S ribosomal protein S4 [Vibrio splendidus LGP32] gi|254764622|sp|B7VLD3|RS4_VIBSL RecName: Full=30S ribosomal protein S4 gi|85833394|gb|EAQ51585.1| 30S ribosomal protein S4 [Vibrio sp. MED222] gi|145960589|gb|EDK25942.1| 30S ribosomal protein S4 [Vibrionales bacterium SWAT-3] gi|218323744|emb|CAV20098.1| ribosomal protein S4 [Vibrio splendidus LGP32] Length = 206 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 77/211 (36%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ +LVNG+ VN+ S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKSILVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEHLIVELYSK 206 >gi|148241720|ref|YP_001226877.1| 30S ribosomal protein S4 [Synechococcus sp. RCC307] gi|172047802|sp|A5GRL5|RS4_SYNR3 RecName: Full=30S ribosomal protein S4 gi|147850030|emb|CAK27524.1| 30S ribosomal protein S4 [Synechococcus sp. RCC307] Length = 202 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ ++ RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGARLRVTRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQGGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY+CK GDVI +++K + ++P ++ + + A Sbjct: 117 VTVNGRVVDIASYQCKAGDVIAIREKKPSKKLAETNLEFPGLANIPPHLELEKSKLTAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 177 VG---KCEREWVALEINELLVVEYYSR 200 >gi|63191649|gb|AAY34786.1| small ribosomal protein subunit 4 [Lindbergia brachyptera] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|67035690|gb|AAY62776.1| small ribosomal protein subunit 4 [Ochrobryum gardneri] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + + + + +++ VP +++ N +I Sbjct: 117 NNYIVNIPSYRCKPQDFITIKNRQKSQSIIAKNIEFSQKYKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + + LVVE+YSR Sbjct: 177 ---LNNESIGLKINELLVVEYYSR 197 >gi|328953131|ref|YP_004370465.1| ribosomal protein S4 [Desulfobacca acetoxidans DSM 11109] gi|328453455|gb|AEB09284.1| ribosomal protein S4 [Desulfobacca acetoxidans DSM 11109] Length = 208 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR L+ + K SY PG HGQ R +K S FG+QLR Sbjct: 1 MARYRESVCRLCRRERMKLFLKGDRCYTDKCAFERHSYPPGQHGQGR-AKFSDFGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FRS F ADR +G T NL++ LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRMYG-LLEKQFRSYFAAADRQKGITGANLLTLLERRLDNVVYRLGFANSRAQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHD 173 V H H LVNG+ +NI SY GD IE+K+KS+++ + EA +A R +P+++ V+ + Sbjct: 119 LVRHNHFLVNGKKINIPSYLVNVGDTIELKEKSRKILQIAEALGAVARRGIPQWLEVDTE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +R+ S +DV P +Q +L+VE YS+ Sbjct: 179 NFRG-IIRLMPSREDVTMP--IQEHLIVELYSK 208 >gi|222103464|gb|ACM44261.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] Length = 202 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K P S + K S + ++L KQK++ Sbjct: 1 MSPYRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKSQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|77862507|gb|ABB04526.1| small ribosomal protein 4 [Asterella africana] Length = 201 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N SV+I SY CK D+I +K + K + + ++ +P +++ + + Sbjct: 117 LINNNSVDIPSYNCKPKDIITIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLIQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|67035678|gb|AAY62770.1| small ribosomal protein subunit 4 [Cladopodanthus speciosus] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A R++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + + + + +++ VP +++++ +I Sbjct: 117 NDYIVNIPSYRCKPQDFIPIKNQQKSQSIIAKNIEFSQKYKVPNHLTLDSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + M LVVE+YSR Sbjct: 177 ---LNNESIGLKMNELLVVEYYSR 197 >gi|190572967|ref|YP_001970812.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia K279a] gi|194364557|ref|YP_002027167.1| 30S ribosomal protein S4 [Stenotrophomonas maltophilia R551-3] gi|254521741|ref|ZP_05133796.1| ribosomal protein S4 [Stenotrophomonas sp. SKA14] gi|226695080|sp|B4SLH4|RS4_STRM5 RecName: Full=30S ribosomal protein S4 gi|226695081|sp|B2FQK7|RS4_STRMK RecName: Full=30S ribosomal protein S4 gi|190010889|emb|CAQ44498.1| putative 30S ribosomal subunit protein S4 [Stenotrophomonas maltophilia K279a] gi|194347361|gb|ACF50484.1| ribosomal protein S4 [Stenotrophomonas maltophilia R551-3] gi|219719332|gb|EED37857.1| ribosomal protein S4 [Stenotrophomonas sp. SKA14] Length = 209 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 17/216 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQR-RKSKPSYFGLQL 52 M++ K+ RR G +L + K + + PG HG RK K S + QL Sbjct: 1 MARYIGPTCKLARREGADLSLKSPARALDSKCKLEQK---PGQHGATARKGKLSDYATQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+K+ YG + E++FR+ +K+A +G+T NL+ LE+RLD +VYR F T AA Sbjct: 58 REKQKVKRIYG-LLERQFRNYYKKASTKKGNTGENLLQLLETRLDNVVYRMGFAVTRPAA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDV-PEYISV 170 RQ V+HR V VNG+SVN+ SY+ K GD I + +K+ + V EA + A+ D+ P ++ V Sbjct: 117 RQLVSHRGVTVNGKSVNLASYQVKAGDAIALSEKAAKQLRVQEALTVAAQHDLSPSWVEV 176 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P P + L+VE YS+ Sbjct: 177 DSGKFTGIFKAVPDR---SDLPADINEALIVELYSK 209 >gi|115605024|ref|YP_784475.1| ribosomal protein S4 [Piper cenocladum] gi|122164360|sp|Q06GQ8|RR4_PIPCE RecName: Full=30S ribosomal protein S4, chloroplastic gi|112253753|gb|ABI14474.1| ribosomal protein S4 [Piper cenocladum] Length = 201 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + S L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRSESS----LRSQPRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLIRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMSSTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I + + + V + A R ++P++++++ Sbjct: 116 VLVNGRIVDIPSYRCKPRDIISTRNEQRSKVLVQNSMDSASREELPKHLTLDSSQYKGVV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---GVGLKINELLVVEYYSR 199 >gi|255526606|ref|ZP_05393513.1| ribosomal protein S4 [Clostridium carboxidivorans P7] gi|296187295|ref|ZP_06855691.1| ribosomal protein S4 [Clostridium carboxidivorans P7] gi|255509714|gb|EET86047.1| ribosomal protein S4 [Clostridium carboxidivorans P7] gi|296048166|gb|EFG87604.1| ribosomal protein S4 [Clostridium carboxidivorans P7] Length = 206 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 119/212 (56%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K V+ R Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGAVCRLCRREGLKLFLKGDRCFTDKCAVSRRGYAPGQHGQSRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + E +FR+ +++A+R RG + NL+ LE RLD + Y+ + + ARQ Sbjct: 60 KQKARRIYG-VLEGQFRTYYEKAERKRGISGENLLKLLEMRLDNVAYKFGYGNSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H L+NG+ V+I SY+ GDVI V +KS+ ++ + +P ++ N +N Sbjct: 119 LVTHGHFLINGKKVDIASYQVSAGDVITVSEKSRSTERFKTFAENP-KALPAWLEGNPEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR PS +D+ PV L+VE YS+ Sbjct: 178 FEGKIVREPSR-EDIDVPV--NETLIVELYSK 206 >gi|84394604|ref|ZP_00993306.1| 30S ribosomal protein S4 [Vibrio splendidus 12B01] gi|84374778|gb|EAP91723.1| 30S ribosomal protein S4 [Vibrio splendidus 12B01] Length = 206 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 128/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ VLVNG+ VN+ S++ DV+ +++K+KQ + + A ++A +R+ P +I V+ M Sbjct: 119 SHKSVLVNGKVVNVPSFKVAANDVVSIREKAKQQSRIKAALEVAEQREKPTWIEVDASKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P + +L+VE YS+ Sbjct: 179 EGTFKRMPER---SDLSADINEHLIVELYSK 206 >gi|328541056|gb|AEB21752.1| ribosomal protein S4 [Kurzia gonyotricha] Length = 200 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKTLKQKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE RLD + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRLDNTILRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + V + L + +P +++ + + + + Sbjct: 117 NNDIVDIPSYNCEPGDIITIREKQKSQSVVTKNINLFQNLKIPSHLTFDSMKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINRESIDLKINELLVVEYYSR 197 >gi|67036082|gb|AAY62967.1| small ribosomal protein subunit 4 [Rigodium toxarion] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|315646149|ref|ZP_07899269.1| ribosomal protein S4 [Paenibacillus vortex V453] gi|315278348|gb|EFU41664.1| ribosomal protein S4 [Paenibacillus vortex V453] Length = 200 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K + R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKE-LAKRPFPPGQHGPNQRRKVSNYGMQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F+++F +A +G N + LESRLD +VYR F + ARQ V H H Sbjct: 60 MYG-LGEKQFKTLFNKATSMKGIAGENFMFLLESRLDNLVYRLGFSNSRAGARQLVAHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY GDVI ++++S+ L+S+ EA +P YI ++ +M ++ Sbjct: 119 VTVNGKKVDIASYAVSTGDVIGLRERSRSLSSIKEALA-NRVHLPAYIELDEASMEGKYI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFY+R Sbjct: 178 RLPERSE---LSQDIDEKQIVEFYNR 200 >gi|56477618|ref|YP_159207.1| 30S ribosomal protein S4 [Aromatoleum aromaticum EbN1] gi|81357334|sp|Q5P308|RS4_AZOSE RecName: Full=30S ribosomal protein S4 gi|56313661|emb|CAI08306.1| 30S Ribosomal protein S4 [Aromatoleum aromaticum EbN1] Length = 209 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 118/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKAEKCFTDKCAIERRAYAPGQHGQRSGQRMSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR ++ EA+R RG T NL+ LE RLD++VYR F + +RQ Sbjct: 61 KQKIRRLYG-VLEAQFRKVYAEAERRRGQTGENLLQLLEGRLDSVVYRMGFGGSRAESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +LVNG+ VNI SY + GDV+E+ + S+ V A + A R PE++ V+ Sbjct: 120 LVRHNGILVNGKRVNIPSYVVRPGDVVELTEGSRGQLRVKAALEAAASRGFPEWLDVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + P + LVVE YSR Sbjct: 180 AGKGTFKAYPQRAE---LPPTINEGLVVELYSR 209 >gi|94312223|ref|YP_585433.1| 30S ribosomal protein S4 [Cupriavidus metallidurans CH34] gi|152112253|sp|Q1LI62|RS4_RALME RecName: Full=30S ribosomal protein S4 gi|93356075|gb|ABF10164.1| 30S ribosomal subunit protein S4 [Cupriavidus metallidurans CH34] Length = 207 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 124/214 (57%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLADKCKLDSK---PGQHGRTSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEADRRKGNTGENLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG ++N+ S + K GD++ V+++SK+ + EA LA + P +++V+ Sbjct: 117 QLVSHKAILVNGETLNVPSAQIKSGDIVSVREQSKKQVRIAEALSLAEQSGFPTWVAVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ + P + +L+VE YSR Sbjct: 177 KKFEGTYKQAPDRAD---ISGDINESLIVELYSR 207 >gi|255067434|ref|ZP_05319289.1| ribosomal protein S4 [Neisseria sicca ATCC 29256] gi|261364879|ref|ZP_05977762.1| ribosomal protein S4 [Neisseria mucosa ATCC 25996] gi|255048229|gb|EET43693.1| ribosomal protein S4 [Neisseria sicca ATCC 29256] gi|288566927|gb|EFC88487.1| ribosomal protein S4 [Neisseria mucosa ATCC 25996] Length = 206 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG +K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAITVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|78369619|gb|ABB43039.1| ribosomal protein 4 [Exostratum blumii] Length = 201 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G L G + +S K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVKIVRRLGV-LPGLTNKVLQLKSNSINQ--STSNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 59 G-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I VK + K + + + ++ +P +++ N + Sbjct: 118 VNNFIVDIPSYRCKPQDFITVKNQQKSEVIINKNIEFYQKFKIPNHLTYNSLEKKGLVNQ 177 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 178 I---LDSESIGLKINELLVVEYYSR 199 >gi|311109577|ref|YP_003982430.1| 30S ribosomal protein S4 [Achromobacter xylosoxidans A8] gi|310764266|gb|ADP19715.1| ribosomal protein S4 [Achromobacter xylosoxidans A8] Length = 207 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 121/214 (56%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFAEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+HR + +NG + +I S K GDV+ +++K+K+ + E+ LA +P+++ V+ Sbjct: 117 QLVSHRAIELNGHTADIASMLVKAGDVVSIREKAKKQGRIKESLDLATSIGIPQWVEVDT 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF P + ++VVE YSR Sbjct: 177 TKLTGTFKSAPDRAD---VARDINESMVVELYSR 207 >gi|66990672|emb|CAI29114.1| small ribosomal protein 4 [Plagiochila barteri] Length = 198 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRSDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + + K + V + L ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGTEQKSQSIVTKNINLFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 ++ + + LVVE+ Sbjct: 177 NQMINR---EWLNLKTNEVLVVEY 197 >gi|66990664|emb|CAI29110.1| small ribosomal protein 4 [Plagiochila fusifera] Length = 198 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLASKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ + K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNEQKSQSLVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 ++ + + + LVVE+ Sbjct: 177 NQMINR---EWINLKINEVLVVEY 197 >gi|26399095|sp|P59137|RR4_CATCI RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504381|emb|CAC80635.1| small ribosomal protein 4 [Catharomnion ciliatum] Length = 202 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K + + + ++ +P ++ N Sbjct: 117 ILVNGYIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLIYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDHESIGLKINELLVVEYYSR 200 >gi|301628935|ref|XP_002943604.1| PREDICTED: 30S ribosomal protein S4-like, partial [Xenopus (Silurana) tropicalis] Length = 212 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 128/213 (60%), Gaps = 15/213 (7%) Query: 2 SKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 ++ K K+ RR G +L+ + K+ +++ PG HG+ + S +GLQLR Sbjct: 7 ARYLGPKAKLSRREGTDLFLKSARRSIADKAKFDSK---PGQHGRTSGQRTSDYGLQLRE 63 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F EADR +G+T NL++ LE RLD +VYR F T ARQ Sbjct: 64 KQKVKRMYG-VMEKQFRRYFAEADRRKGNTGANLLTLLECRLDNMVYRMGFGSTRAEARQ 122 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V+H+ +LVNG++VNI S+ K GDV+ V++KSK+ V+EA QLA++ P ++ V D Sbjct: 123 LVSHKAILVNGQAVNIPSFLVKVGDVVSVREKSKKQGRVVEALQLAQQVGFPAWVEVAAD 182 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F ++P + + + +L+VE YSR Sbjct: 183 KAEGVFKKVPDRDE---FGADINESLIVELYSR 212 >gi|67035779|gb|AAY62820.1| small ribosomal protein subunit 4 [Calliergonella cuspidata] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSKTIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|220903959|ref|YP_002479271.1| ribosomal protein S4 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254764584|sp|B8IYL6|RS4_DESDA RecName: Full=30S ribosomal protein S4 gi|219868258|gb|ACL48593.1| ribosomal protein S4 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 208 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYTEAKCRMCRREGCKLFLKGDRCFTDKCAYDRRPYAPGQHGRARK-KVSEYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E++F F +AD +G T NL+ LE RLD +VYR F + ARQ Sbjct: 60 KQKTRRIYG-ILERQFHGYFVKADMQKGVTGTNLLVILERRLDNVVYRLGFANSRNQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VNI S + + GD IEV +K++++ + EA + +A R P ++ + Sbjct: 119 LVRHGVFTLNGRKVNIPSLQVRLGDTIEVPEKNRKIPVLAEAQEVIARRGCPAWLEADGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P D+ +PV L+VE YS+ Sbjct: 179 AFKGTVKAMPQR-DDIQFPV--NEQLIVELYSK 208 >gi|49182740|gb|AAT57832.1| small ribosomal protein [Lepicolea ochroleuca] Length = 195 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKLIRRLGALPGLTSKTLKPKSSYI---DRPTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRNKQKSQSIITKNINLFQNLKIPSHLTFDSTKLCGSITQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWITLKINELLVVEYYSR 193 >gi|6002083|emb|CAA58951.1| ribosomal protein S4 [Smilax aspera] Length = 196 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRP----KSGSDLKNQLRSRKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + + A + + + R ++P++++++ Sbjct: 116 ILVNGRVVDIPSYRCKPQDIITPKDEQRSKALIQNSIASSPREELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|3098198|gb|AAC15547.1| small ribosomal protein 4 [Leptobryum pyriforme] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFIIIKDRQKSQAIISKNIEFYQKYKIPNHLTYNSLKKQGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103534|gb|ACM44296.1| small ribosomal protein subunit 4 [Leucodon pendulus] Length = 203 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + ++ RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRVIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|157689548|gb|ABV65330.1| ribosomal protein S4 [Quillaja saponaria] Length = 197 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 9/203 (4%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K RR+G K P G L Q R K S + ++L KQK++ +YG Sbjct: 1 RGPRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN Sbjct: 56 LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 GR V+I SYRCK D+I + + K A + + R ++P+++++ +I Sbjct: 116 GRIVDIPSYRCKPQDIITARDEQKSRALIQNYLDSSPREELPKHLTLPPFQYKGLVNQII 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 S + + LVVE+YSR Sbjct: 176 DSK---WVGLKINELLVVEYYSR 195 >gi|3098242|gb|AAC15569.1| small ribosomal protein 4 [Goniobryum subbasilare] Length = 200 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K + + ++ +P +++ N + Sbjct: 117 VNDRIVDIPSYRCKPQDFITIKDQQKYQTIISKNIYFYQKYKIPNHLTYNSLEKKGLVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRESIGLKINELLVVEYYSR 198 >gi|253575746|ref|ZP_04853081.1| 30S ribosomal protein S4 [Paenibacillus sp. oral taxon 786 str. D14] gi|251844789|gb|EES72802.1| 30S ribosomal protein S4 [Paenibacillus sp. oral taxon 786 str. D14] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G QL KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKDL--KRPFPPGQHGPNQRRKVSNYGAQLLEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A G + LESRLD +VYR F + ARQ V+H H Sbjct: 59 MYG-LGEKQFRTLFEKAQHMPGIAGETFMILLESRLDNLVYRLGFANSRAGARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SYR GDVI ++++S+ L+SV EA + VP Y+ N + ++ Sbjct: 118 VTVNGKKVDIASYRVNVGDVIGLRERSRGLSSVKEALE-NRTHVPAYLEFNDTTLEGKYI 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFY+R Sbjct: 177 RLPERSE---LSQDIDEKQIVEFYNR 199 >gi|119946251|ref|YP_943931.1| ribosomal protein S4 [Psychromonas ingrahamii 37] gi|152060918|sp|A1SXW7|RS4A_PSYIN RecName: Full=30S ribosomal protein S4 A gi|119864855|gb|ABM04332.1| SSU ribosomal protein S4P [Psychromonas ingrahamii 37] Length = 206 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HG RK + S +GLQLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGVHG-ARKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KE+ R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKESARLQGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ VLVNG+ VNI S+ K DVI +++K+K+ + + A ++A +R+VP ++SV+ M Sbjct: 119 SHKAVLVNGKVVNIPSFNVKASDVIAIREKAKKQSRIGAALEIAGQREVPTWVSVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + L++E YS+ Sbjct: 179 EGVFTRQPER---SDLSAEINEQLIIELYSK 206 >gi|41323101|gb|AAR99780.1| small ribosomal protein 4 [Chiastocaulon dendroides] gi|41323103|gb|AAR99781.1| small ribosomal protein 4 [Chiastocaulon dendroides] Length = 202 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K + +Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKILKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLVKYMRIARKAKGSTGQLLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + + + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + + LVVE+YSR Sbjct: 177 NQMINR---EWINLKINELLVVEYYSR 200 >gi|67035558|gb|AAY62710.1| small ribosomal protein subunit 4 [Astomiopsis kieneri] Length = 199 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P+ S+ + K S + ++L KQK++ +YG Sbjct: 2 RGPRVRIIRRLGILPGLTNKTPLLKSSF---TNQSTSNKKISQYRIRLEEKQKLRFHYG- 57 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNH+H+LVN Sbjct: 58 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHKHILVN 117 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ + +++ VP +++ N +I Sbjct: 118 DRIVNIPSYRCKPQDFITIKARQKSRAMIIKNVEFSQKSKVPNHLTFNSLEKKGLINQI- 176 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 --LDQESIGLKINELLVVEYYSR 197 >gi|328541134|gb|AEB21791.1| ribosomal protein S4 [Telaranea patentissima] Length = 200 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKILKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GDVI +K K K + + + L + + +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDVITIKDKQKSRSIITKNINLFQNLKIASHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|310642769|ref|YP_003947527.1| 30S ribosomal protein s4 [Paenibacillus polymyxa SC2] gi|309247719|gb|ADO57286.1| 30S ribosomal protein S4 [Paenibacillus polymyxa SC2] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K K+ RR+G +L G K R + PG HG ++ K S +G+QL+ KQK++ Sbjct: 1 MARYTGPKFKLSRRLGISLSGTGKEL--KRPFPPGQHGANQRRKISNYGMQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F +A G N + LESRLD +V+R F + ARQ V H H Sbjct: 59 MYG-LGEKQFRTLFNKAQHMHGIAGENFMFLLESRLDNLVFRLGFANSRAGARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG+ V+I SY+ GDVI ++++S+ L+S+ EA + + Y+ N + ++ Sbjct: 118 VTVNGKKVDIASYQVSPGDVIGLRERSRSLSSIKEALE-NRNHLVAYLEYNDAALEGKYI 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + +VEFY+R Sbjct: 177 RLPERAE---LSQDIDEKQIVEFYNR 199 >gi|59803303|gb|AAX07760.1| Rps4 [Lunularia cruciata] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + KI RR+G K+ + Y + K S + ++L KQK++ Sbjct: 1 MSXYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R PTI A Q VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLXLLEMRLDNIIFRLGMAPTIPGAGQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +L+N +V+I Y CK DVI +K + K + + + ++ +P ++S + Sbjct: 117 ILINDNTVDIPXYNCKPKDVITIKNRQKSQSIITKNLTSFQKQKIPNHLSFDLIQFQGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---EWIYLKINELLVVEYYSR 200 >gi|67035666|gb|AAY62764.1| small ribosomal protein subunit 4 [Atractylocarpus longisetus] Length = 198 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRHVLVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHVLVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K + + + +++ VP +++ N +I Sbjct: 117 NYIVNIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQKYKVPNHLTFNSLKKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LNHESIGLNINELLVVEYYSR 196 >gi|322719567|gb|ADX07720.1| small ribosomal protein subunit 4 [Schistidium rivulare] Length = 198 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSLI---NQSTSSKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|322719515|gb|ADX07694.1| small ribosomal protein subunit 4 [Racomitrium himalayanum] gi|322719517|gb|ADX07695.1| small ribosomal protein subunit 4 [Racomitrium himalayanum] gi|322719519|gb|ADX07696.1| small ribosomal protein subunit 4 [Racomitrium himalayanum] Length = 198 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NHIVNIPSYRCKPQDFITIKDRQKSQAMIMKNIYFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|317490401|ref|ZP_07948885.1| ribosomal protein S4 [Eggerthella sp. 1_3_56FAA] gi|325833388|ref|ZP_08165837.1| ribosomal protein S4 [Eggerthella sp. HGA1] gi|316910536|gb|EFV32161.1| ribosomal protein S4 [Eggerthella sp. 1_3_56FAA] gi|325485312|gb|EGC87781.1| ribosomal protein S4 [Eggerthella sp. HGA1] Length = 208 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R+Y PG G++R K S + QLR Sbjct: 1 MARYTGADCRLCRREGAKLFLKGDRCYTEKCAIERRNYAPGEAGKKR-IKESEYRNQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR + A+R +G T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKTKRIYG-VLEKQFRHYYDMANRQKGVTGENLLRILESRLDNVVYRLGFAKSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+ VNGR V+I S+R K GD++ V K+ L + A ER VP ++ V+ + Sbjct: 119 QVRHGHITVNGRRVDIPSFRVKPGDLVAVAPKAADLLVIKSALISNERVQVPAWLEVDIE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +P + + ++ L+VE YS+ Sbjct: 179 KLQGSVLALPQRDQ---IDLDIREQLIVELYSK 208 >gi|300857220|ref|YP_003782204.1| 30S ribosomal protein S4 [Clostridium ljungdahlii DSM 13528] gi|300437335|gb|ADK17102.1| 30S ribosomal protein S4 [Clostridium ljungdahlii DSM 13528] Length = 206 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 117/212 (55%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR G L+ + K + R Y PG HGQRRK K S +GLQLR Sbjct: 1 MARYTGSVCRLCRREGLKLFLKGDRCYTDKCAFSRRGYAPGQHGQRRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR ++ ADR +G T NL+ LE+RLD ++YR + + ARQ Sbjct: 60 KQKAKRIYG-LLEGQFRKYYETADRKKGITGENLLVLLETRLDNVIYRLGYGQSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H LVNGR V+I S++ D I V KSK ++ + +P ++ N +N Sbjct: 119 LVTHGHFLVNGRKVDIPSFKVSVNDNITVSDKSKSSEKFKTFAENP-KTLPSWLEGNVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A +R P+ +D+ PV L+VE YS+ Sbjct: 178 FQAKVLRQPTR-EDIDVPV--NETLIVELYSK 206 >gi|312877392|ref|ZP_07737357.1| ribosomal protein S4 [Caldicellulosiruptor lactoaceticus 6A] gi|311795866|gb|EFR12230.1| ribosomal protein S4 [Caldicellulosiruptor lactoaceticus 6A] Length = 208 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MSK ++ RR G L+ + K R Y PG HGQ RK K S +G+QLR Sbjct: 1 MSKYIGPDCRLCRREGMKLFLKGDRCYTEKCAFARRPYPPGQHGQERK-KLSEYGMQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A++ +G NL+S LE RLD +VYR F + AR Sbjct: 60 KQKVKRIYG-VLETQFRRYFEMAEKMKGIAGENLLSLLERRLDNVVYRLGFASSRGEARV 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H VNGR+VNI SY K GD IEV ++SK +E + A++ P+++ + + Sbjct: 119 LVTHAHFKVNGRTVNIPSYLVKVGDEIEVDERSKSKTRFVEIKEKYAKKPSPKWLDKDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+V + +P+ +D+ P+ +L+VE YS+ Sbjct: 179 NLVGRVIALPTR-EDIDMPIR--EHLIVELYSK 208 >gi|222103500|gb|ACM44279.1| small ribosomal protein subunit 4 [Anomodon minor] Length = 204 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 6 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 63 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 122 NDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 182 ---LDRESIGLKINELLVVEYYSR 202 >gi|327325138|gb|EGE66944.1| ribosomal protein S4 [Propionibacterium acnes HL096PA3] Length = 201 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRSR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|118625991|emb|CAL39317.1| small ribosomal protein 4 [Gongylanthus reniformis] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ Y K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGVLPGSTNKTLKPKSGYI---DRSISNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A ++G T L+ E R D ++R PTI ARQ VNH H Sbjct: 58 HYG-LTERQLLKYVRIAREAKGSTGQVLLQLPEMRSDNTIFRLGMAPTIPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I VK K K + + + L + P +++++ + + Sbjct: 117 ISINNSIVDIPSYNCEPGDIITVKDKRKSRSVITKNINLFKNLRTPSHLTLDSTELRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 DQ---TINREWIDLKVNELLVVEYYSR 200 >gi|77862511|gb|ABB04528.1| small ribosomal protein 4 [Asterella wallichiana] Length = 201 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTISGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK D+I +K + K + + + ++ +P +++ + + Sbjct: 117 LINNNPVDIPSYNCKPKDIITIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLMQIKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|63191651|gb|AAY34787.1| small ribosomal protein subunit 4 [Pseudoleskeella tectorum] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|67035640|gb|AAY62751.1| small ribosomal protein subunit 4 [Serpotortella chenagonii] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ YYG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKKPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFYYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R +NI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NNRIINIPSYRCKPQDFITIKDRQKYQAMIIKNLDFSQKTKIPNHLTFNSLEKNGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|227538693|ref|ZP_03968742.1| ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33300] gi|227241612|gb|EEI91627.1| ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33300] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G K + ++Y PG HG +R+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFREPIFGPDK-ALEKKNYPPGQHGPSKRRGKQSEYAIQLLEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F +A +G T N + LE+RLD VYR PT AARQ V+H+ Sbjct: 60 YTYG-VLERQFSNLFVKAAAKQGITGENFLKLLEARLDNTVYRLGIAPTRAAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY + GDVI V+++S+ L +V + + + + ++ N + TF Sbjct: 119 HITVNGGVVNIPSYSLRPGDVIAVRERSQSLEAVTTSVEGRKINKFAWLEWNANEFKGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P P ++ NL+VE YS+ Sbjct: 179 LSYPERTD---IPENIKENLIVELYSK 202 >gi|67035674|gb|AAY62768.1| small ribosomal protein subunit 4 [Dicranodontium meridionale] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLSGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K V + + +++ VP +++ N +I Sbjct: 117 NNYIVNIPSYRCKPQDFITIKNRQKSQFIVTKNIEFSQKYKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LNKESIGLKINELLVVEYYSR 197 >gi|63191720|gb|AAY34820.1| small ribosomal protein subunit 4 [Mniomalia semilimbata] Length = 198 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGVLPGLTNKTPQLNSSTI---NTSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMALTIPEARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKDQQKFQTIISKNIDFYQKSKIPNHLTYNSLTKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIDLKINELLVVEYYSR 196 >gi|29377528|ref|NP_816682.1| 30S ribosomal protein S4 [Enterococcus faecalis V583] gi|227517321|ref|ZP_03947370.1| 30S ribosomal protein S4 [Enterococcus faecalis TX0104] gi|227554493|ref|ZP_03984540.1| 30S ribosomal protein S4 [Enterococcus faecalis HH22] gi|229547500|ref|ZP_04436225.1| 30S ribosomal protein S4 [Enterococcus faecalis TX1322] gi|229548076|ref|ZP_04436801.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 29200] gi|256618170|ref|ZP_05475016.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 4200] gi|256854748|ref|ZP_05560112.1| ribosomal protein S4 [Enterococcus faecalis T8] gi|256958352|ref|ZP_05562523.1| 30S ribosomal protein S4 [Enterococcus faecalis DS5] gi|256960421|ref|ZP_05564592.1| 30S ribosomal protein S4 [Enterococcus faecalis Merz96] gi|256962912|ref|ZP_05567083.1| 30S ribosomal protein S4 [Enterococcus faecalis HIP11704] gi|257078338|ref|ZP_05572699.1| 30S ribosomal protein S4 [Enterococcus faecalis JH1] gi|257080522|ref|ZP_05574883.1| 30S ribosomal protein S4 [Enterococcus faecalis E1Sol] gi|257083258|ref|ZP_05577619.1| 30S ribosomal protein S4 [Enterococcus faecalis Fly1] gi|257088187|ref|ZP_05582548.1| 30S ribosomal protein S4 [Enterococcus faecalis D6] gi|257091313|ref|ZP_05585674.1| 30S ribosomal protein S4 [Enterococcus faecalis CH188] gi|257417921|ref|ZP_05594915.1| 30S ribosomal protein S4 [Enterococcus faecalis T11] gi|257420473|ref|ZP_05597463.1| 30S ribosomal protein S4 [Enterococcus faecalis X98] gi|293383922|ref|ZP_06629824.1| ribosomal protein S4 [Enterococcus faecalis R712] gi|293388316|ref|ZP_06632830.1| ribosomal protein S4 [Enterococcus faecalis S613] gi|294780202|ref|ZP_06745574.1| ribosomal protein S4 [Enterococcus faecalis PC1.1] gi|300861437|ref|ZP_07107521.1| ribosomal protein S4 [Enterococcus faecalis TUSoD Ef11] gi|307270423|ref|ZP_07551724.1| ribosomal protein S4 [Enterococcus faecalis TX4248] gi|307273936|ref|ZP_07555148.1| ribosomal protein S4 [Enterococcus faecalis TX0855] gi|307276703|ref|ZP_07557820.1| ribosomal protein S4 [Enterococcus faecalis TX2134] gi|307278207|ref|ZP_07559289.1| ribosomal protein S4 [Enterococcus faecalis TX0860] gi|307286409|ref|ZP_07566515.1| ribosomal protein S4 [Enterococcus faecalis TX0109] gi|307292091|ref|ZP_07571958.1| ribosomal protein S4 [Enterococcus faecalis TX0411] gi|312901910|ref|ZP_07761173.1| ribosomal protein S4 [Enterococcus faecalis TX0470] gi|312905372|ref|ZP_07764487.1| ribosomal protein S4 [Enterococcus faecalis TX0635] gi|312906737|ref|ZP_07765737.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 512] gi|312910725|ref|ZP_07769564.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 516] gi|312953171|ref|ZP_07772018.1| ribosomal protein S4 [Enterococcus faecalis TX0102] gi|41017833|sp|Q82ZI6|RS4_ENTFA RecName: Full=30S ribosomal protein S4 gi|29344995|gb|AAO82752.1| ribosomal protein S4 [Enterococcus faecalis V583] gi|227075191|gb|EEI13154.1| 30S ribosomal protein S4 [Enterococcus faecalis TX0104] gi|227176403|gb|EEI57375.1| 30S ribosomal protein S4 [Enterococcus faecalis HH22] gi|229306762|gb|EEN72758.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 29200] gi|229307342|gb|EEN73329.1| 30S ribosomal protein S4 [Enterococcus faecalis TX1322] gi|256597697|gb|EEU16873.1| 30S ribosomal protein S4 [Enterococcus faecalis ATCC 4200] gi|256710308|gb|EEU25352.1| ribosomal protein S4 [Enterococcus faecalis T8] gi|256948848|gb|EEU65480.1| 30S ribosomal protein S4 [Enterococcus faecalis DS5] gi|256950917|gb|EEU67549.1| 30S ribosomal protein S4 [Enterococcus faecalis Merz96] gi|256953408|gb|EEU70040.1| 30S ribosomal protein S4 [Enterococcus faecalis HIP11704] gi|256986368|gb|EEU73670.1| 30S ribosomal protein S4 [Enterococcus faecalis JH1] gi|256988552|gb|EEU75854.1| 30S ribosomal protein S4 [Enterococcus faecalis E1Sol] gi|256991288|gb|EEU78590.1| 30S ribosomal protein S4 [Enterococcus faecalis Fly1] gi|256996217|gb|EEU83519.1| 30S ribosomal protein S4 [Enterococcus faecalis D6] gi|257000125|gb|EEU86645.1| 30S ribosomal protein S4 [Enterococcus faecalis CH188] gi|257159749|gb|EEU89709.1| 30S ribosomal protein S4 [Enterococcus faecalis T11] gi|257162297|gb|EEU92257.1| 30S ribosomal protein S4 [Enterococcus faecalis X98] gi|291078749|gb|EFE16113.1| ribosomal protein S4 [Enterococcus faecalis R712] gi|291082326|gb|EFE19289.1| ribosomal protein S4 [Enterococcus faecalis S613] gi|294452745|gb|EFG21175.1| ribosomal protein S4 [Enterococcus faecalis PC1.1] gi|295114399|emb|CBL33036.1| SSU ribosomal protein S4P [Enterococcus sp. 7L76] gi|300848898|gb|EFK76651.1| ribosomal protein S4 [Enterococcus faecalis TUSoD Ef11] gi|306496873|gb|EFM66423.1| ribosomal protein S4 [Enterococcus faecalis TX0411] gi|306502422|gb|EFM71695.1| ribosomal protein S4 [Enterococcus faecalis TX0109] gi|306505196|gb|EFM74384.1| ribosomal protein S4 [Enterococcus faecalis TX0860] gi|306506602|gb|EFM75755.1| ribosomal protein S4 [Enterococcus faecalis TX2134] gi|306509415|gb|EFM78473.1| ribosomal protein S4 [Enterococcus faecalis TX0855] gi|306513201|gb|EFM81832.1| ribosomal protein S4 [Enterococcus faecalis TX4248] gi|310627385|gb|EFQ10668.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 512] gi|310628914|gb|EFQ12197.1| ribosomal protein S4 [Enterococcus faecalis TX0102] gi|310631396|gb|EFQ14679.1| ribosomal protein S4 [Enterococcus faecalis TX0635] gi|311288988|gb|EFQ67544.1| ribosomal protein S4 [Enterococcus faecalis DAPTO 516] gi|311290977|gb|EFQ69533.1| ribosomal protein S4 [Enterococcus faecalis TX0470] gi|315027687|gb|EFT39619.1| ribosomal protein S4 [Enterococcus faecalis TX2137] gi|315028229|gb|EFT40161.1| ribosomal protein S4 [Enterococcus faecalis TX4000] gi|315031243|gb|EFT43175.1| ribosomal protein S4 [Enterococcus faecalis TX0017] gi|315036538|gb|EFT48470.1| ribosomal protein S4 [Enterococcus faecalis TX0027] gi|315143294|gb|EFT87310.1| ribosomal protein S4 [Enterococcus faecalis TX2141] gi|315148889|gb|EFT92905.1| ribosomal protein S4 [Enterococcus faecalis TX4244] gi|315149065|gb|EFT93081.1| ribosomal protein S4 [Enterococcus faecalis TX0012] gi|315152920|gb|EFT96936.1| ribosomal protein S4 [Enterococcus faecalis TX0031] gi|315154776|gb|EFT98792.1| ribosomal protein S4 [Enterococcus faecalis TX0043] gi|315157493|gb|EFU01510.1| ribosomal protein S4 [Enterococcus faecalis TX0312] gi|315162550|gb|EFU06567.1| ribosomal protein S4 [Enterococcus faecalis TX0645] gi|315164504|gb|EFU08521.1| ribosomal protein S4 [Enterococcus faecalis TX1302] gi|315167181|gb|EFU11198.1| ribosomal protein S4 [Enterococcus faecalis TX1341] gi|315171025|gb|EFU15042.1| ribosomal protein S4 [Enterococcus faecalis TX1342] gi|315173453|gb|EFU17470.1| ribosomal protein S4 [Enterococcus faecalis TX1346] gi|315573361|gb|EFU85552.1| ribosomal protein S4 [Enterococcus faecalis TX0309B] gi|315578558|gb|EFU90749.1| ribosomal protein S4 [Enterococcus faecalis TX0630] gi|315581207|gb|EFU93398.1| ribosomal protein S4 [Enterococcus faecalis TX0309A] gi|323479004|gb|ADX78443.1| ribosomal protein S4 [Enterococcus faecalis 62] gi|327536193|gb|AEA95027.1| 30S ribosomal protein S4 [Enterococcus faecalis OG1RF] gi|329571122|gb|EGG52828.1| ribosomal protein S4 [Enterococcus faecalis TX1467] Length = 203 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KS+ ++++ EA + A P ++S + + + +F Sbjct: 119 HITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVE-ATVGRPAFVSFDTEKLEGSF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P D YP + LVVE+Y Sbjct: 178 TRLPER--DELYP-EIDEALVVEYY 199 >gi|326799154|ref|YP_004316973.1| ribosomal protein S4 [Sphingobacterium sp. 21] gi|326549918|gb|ADZ78303.1| ribosomal protein S4 [Sphingobacterium sp. 21] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHG-QRRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G K + ++Y PG+HG +R+ K S + +QL+ KQK K Sbjct: 1 MARYTGPKSKIARKFREPIFGPDK-ALERKNYPPGMHGVSKRRGKQSEYAIQLQEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F +A G T NL+ FLE+RLD V+R PT ARQ V H+ Sbjct: 60 YTYG-VLERQFANLFDKAASKEGITGENLLKFLEARLDNTVFRLGIAPTRAGARQLVGHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ VNI SY + GDVI V+++SK L +V+ + +++ ++ + + + F Sbjct: 119 HITVNGQVVNIPSYSVRPGDVIAVRERSKTLEAVVNSVAGRKQNKYSWLEWDANGLTGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ + P ++ L+VE YS+ Sbjct: 179 LNYPNRDE---IPENIKEQLIVELYSK 202 >gi|26399106|sp|P59143|RR4_HYPDI RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504363|emb|CAC81025.1| small ribosomal protein 4 [Hypopterygium didictyon] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K A + + + ++ +P +++ N Sbjct: 117 ILVNGYIVDIPSYRCKPQDFINIKNQRKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LNRESIGLKINELLVVEYYSR 200 >gi|284928899|ref|YP_003421421.1| 30S ribosomal protein S4P [cyanobacterium UCYN-A] gi|284809358|gb|ADB95063.1| SSU ribosomal protein S4P [cyanobacterium UCYN-A] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + ++ RR+GE K+P R+Y PG HGQ R+ K S + ++L KQK+ Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKNP--RRTYPPGQHGQGRR-KRSEYAVRLEEKQKLLY 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ K+A R+ G T L+ LE RLD V+R TI ARQ VNH H Sbjct: 58 NYG-VTEKQLIRYMKKARRATGSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNHCH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 VLVNGR+VNI SY+C+ GD+I V+ V Q ++PE++ + + Sbjct: 117 VLVNGRTVNIASYQCRAGDIISVRNNDNSRRMVEANMQYPGLANLPEHLEFDKNTFTGKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +K + + L+VE+YSR Sbjct: 177 NDV---IKREWVALQINELLIVEYYSR 200 >gi|14276324|gb|AAK58200.1| small ribosomal protein 4 [Helicophyllum torquatum] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ YYG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFYYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NNRVVDIPSYRCKPQDFITIKNRQKSQVVISKNIDFYQKFKIPNHLTYNSLENKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LNRESIGLKINELLVVEYYSR 197 >gi|257792535|ref|YP_003183141.1| 30S ribosomal protein S4 [Eggerthella lenta DSM 2243] gi|257476432|gb|ACV56752.1| ribosomal protein S4 [Eggerthella lenta DSM 2243] Length = 208 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G L+ + K + R+Y PG G++R K S + QLR Sbjct: 1 MARYTGADCRLCRREGAKLFLKGDRCYTEKCAIERRNYAPGEAGKKR-IKESEYRNQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR + A+R +G T NL+ LESRLD +VYR F + ARQ Sbjct: 60 KQKTKRIYG-VLEKQFRHYYDMANRQKGVTGENLLRILESRLDNVVYRLGFAKSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+ VNGR V+I S+R K GD++ V K+ L + A ER VP ++ V+ + Sbjct: 119 QVRHGHITVNGRRVDIPSFRVKPGDLVAVAPKAADLLVIKSALISNERVQVPSWLEVDIE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + +P + + ++ L+VE YS+ Sbjct: 179 KLQGSVLALPQRDQ---IDLDIREQLIVELYSK 208 >gi|46486588|gb|AAS98730.1| ribosomal protein subunit 4 [Dendro-hypnum auricomum] Length = 199 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G L K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALLGLTNKTAQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNHVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ + +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKYKIPNHLTYSSLERKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|37548857|gb|AAO32697.1| ribosomal protein 4 [Pogonatum dentatum] Length = 196 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 10/200 (5%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISE 67 KI RR+G K+P PG Q K S + ++L KQK++ +YG I+E Sbjct: 3 CKIIRRLGALPGLTNKTPQLK----PGYMNQTVSNKKISQYRIRLEEKQKLRFHYG-ITE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN Sbjct: 58 RQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHI 117 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + + + +++ +P +++ N +I L Sbjct: 118 VNIPSYRCKPQDFITIKDRQESQVIIDKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 174 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 DRESIGLKINELLVVEYYSR 194 >gi|63191726|gb|AAY34823.1| small ribosomal protein subunit 4 [Fleischerobryum longicolle] Length = 197 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 RIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|270291002|ref|ZP_06197225.1| 30S ribosomal protein S4 [Pediococcus acidilactici 7_4] gi|304385274|ref|ZP_07367619.1| 30S ribosomal protein S4 [Pediococcus acidilactici DSM 20284] gi|270280398|gb|EFA26233.1| 30S ribosomal protein S4 [Pediococcus acidilactici 7_4] gi|304328481|gb|EFL95702.1| 30S ribosomal protein S4 [Pediococcus acidilactici DSM 20284] Length = 202 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HGQ + K S +G+QLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYAPGDHGQNNRRKISEYGMQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + R G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFANLFDRASKMREGVPGTNFMILLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KSK L + EA + A P+++ + D + + Sbjct: 119 HITVDGKRVDIPSYEVEIGQVIGVREKSKDLKIINEAVE-AVVGRPQFVQFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 178 VRLPERDE---LEAEIDDSLIVEYYNK 201 >gi|168211877|ref|ZP_02637502.1| ribosomal protein S4 [Clostridium perfringens B str. ATCC 3626] gi|170710184|gb|EDT22366.1| ribosomal protein S4 [Clostridium perfringens B str. ATCC 3626] Length = 206 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 VNH H LVNG+ V+I S++ D I V +KS+ ++ + +P+++ N +N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDFITVCEKSRGSERFKMFAENP-KALPKWLEANVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V P+ +D+ PV L+VE YS+ Sbjct: 178 FEGKVVAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|328541164|gb|AEB21806.1| ribosomal protein S4 [Lepidozia bisbifida] Length = 198 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ +Y K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGAPPGLTSKTLKPKSNYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPGDIITIRDKQKSRSIIAKNVSLFQNLKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|222103490|gb|ACM44274.1| small ribosomal protein subunit 4 [Aulacomnium turgidum] Length = 200 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S K S + ++L KQK++ +YG Sbjct: 2 YRGPRVRIIRRLGALPGLTTKTPQLKSSSI---DQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + L ++ +P +++ + +I Sbjct: 118 NDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKYKIPNHLTYSSLEKKGLVNQI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LDRESIGLKINELLVVEYYSR 198 >gi|12642226|gb|AAK00195.1| rps4 [Entosthodon laevis] gi|39546757|gb|AAR28105.1| small ribosomal protein 4 [Entosthodon laevis] gi|67035726|gb|AAY62794.1| small ribosomal protein subunit 4 [Entosthodon laevis] Length = 193 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P S Q K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGVLPGLTNKIPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V Sbjct: 56 QLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + +++ VP +++ N +I L Sbjct: 116 DIPSYRCKPDDSITIKNRQKSQAIITKNIDFSQKSKVPNHLTFNSTQKKGLVNQI---LD 172 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 RESIGLKINELLVVEYYSR 191 >gi|237747389|ref|ZP_04577869.1| small subunit ribosomal protein S4 [Oxalobacter formigenes HOxBLS] gi|229378740|gb|EEO28831.1| small subunit ribosomal protein S4 [Oxalobacter formigenes HOxBLS] Length = 207 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ + PG HG + ++ S +G QLR Sbjct: 1 MARYIGPKAKLSRREGTDLFLKSARRSLDSKCKLDVK---PGQHGMKSGARTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG I EK+FR F EA+R +G+T NL+ LESRLD +VYR F T +R Sbjct: 58 EKQKVKRMYG-ILEKQFRRYFAEAERRKGNTGDNLMQLLESRLDNVVYRMGFGSTRAESR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ ++VNG+ VNI SY K DVI +++K+K+ ++E+ LAE+ + +++SV+ Sbjct: 117 QLVSHQALMVNGKVVNIPSYLVKPEDVITIREKAKKQNRIVESLSLAEQIGLADWVSVDS 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + + + +L++E YSR Sbjct: 177 KKMEGVFKRVPDRSE---FANDVNESLIIELYSR 207 >gi|77862533|gb|ABB04539.1| small ribosomal protein 4 [Mannia androgyna] Length = 201 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+ Sbjct: 58 YG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK D+I +K + K + + ++ +P +++ + + Sbjct: 117 LINNNPVDIPSYNCKPKDIITIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLIQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|113952789|ref|YP_729847.1| 30S ribosomal protein S4 [Synechococcus sp. CC9311] gi|123327937|sp|Q0ICH5|RS4_SYNS3 RecName: Full=30S ribosomal protein S4 gi|113880140|gb|ABI45098.1| ribosomal protein S4 [Synechococcus sp. CC9311] Length = 202 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRIGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR +I SY+CK GDVI ++++ Q +VP ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQCKAGDVIAIRERKCSKLLAEANLQFPGLANVPPHLELDKPKLSAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 ---IGRAEREWVALEINELLVVEYYSR 200 >gi|3098200|gb|AAC15548.1| small ribosomal protein 4 [Meesia uliginosa] Length = 199 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNLEFYQKYKIPNHLTYNSLKKQGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|119478108|ref|ZP_01618187.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2143] gi|119448814|gb|EAW30057.1| ribosomal protein S4 [marine gamma proteobacterium HTCC2143] Length = 206 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 124/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + P++++ PG+HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSGVRPLDSKCKAEAPPGVHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 H+ +L+N + VNI SY+ K GD + V++K+K V +A +L A+R E+I VN NM Sbjct: 119 AHKSILINDKVVNIASYQVKAGDKVSVREKAKSQLRVKQAIELAAQRGDAEWIEVNVSNM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ P + +L+VE YS+ Sbjct: 179 EGTYKAKPDRAD---LSSEINESLIVELYSK 206 >gi|110801849|ref|YP_699635.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] gi|122956505|sp|Q0SQH2|RS4A_CLOPS RecName: Full=30S ribosomal protein S4 A gi|110682350|gb|ABG85720.1| 30S ribosomal protein S4 [Clostridium perfringens SM101] Length = 206 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 VNH H LVNG+ V+I S++ DVI V +KS+ ++ + +P+++ N +N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDVITVCEKSRGSERFKMFAENP-KALPKWLEANVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ +D+ PV L+VE YS+ Sbjct: 178 FEGKVIAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|157825598|ref|YP_001493318.1| 30S ribosomal protein S4 [Rickettsia akari str. Hartford] gi|172047793|sp|A8GN35|RS4_RICAH RecName: Full=30S ribosomal protein S4 gi|157799556|gb|ABV74810.1| 30S ribosomal protein S4 [Rickettsia akari str. Hartford] Length = 205 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 136/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGQNAMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+FR++F A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 HYGRVTEKQFRNLFVLAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGDVI +K+ KQ+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDVIAIKESVKQIPLIQESVSKQGQTTPGYLSFDVHSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPA-LSDVPYPFEAEVHLVIELYSR 205 >gi|298370567|ref|ZP_06981882.1| ribosomal protein S4 [Neisseria sp. oral taxon 014 str. F0314] gi|298281177|gb|EFI22667.1| ribosomal protein S4 [Neisseria sp. oral taxon 014 str. F0314] Length = 206 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++ PG HG +K + S +GLQLR Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDS---APGQHG-AKKPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EA R +G T L+ LESRLD +VYR F T AR Sbjct: 57 EKQKIRRIYG-VLERQFRRYFAEAARRKGSTGELLLQLLESRLDNVVYRLGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+ VNI SY+ K GD+I V++K+K+ + EA LA + +P ++SV+ Sbjct: 116 QLVSHKAITVNGQVVNIPSYQVKAGDIIAVREKAKKQVRIQEALNLATQIGLPSWVSVDT 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F +P + + LVVEFYS+ Sbjct: 176 NKLEGVFKNMPDRSE---LSSDINEQLVVEFYSK 206 >gi|115604936|ref|YP_784388.1| ribosomal protein S4 [Drimys granadensis] gi|122164439|sp|Q06GZ5|RR4_DRIGR RecName: Full=30S ribosomal protein S4, chloroplastic gi|112032664|gb|ABH88299.1| ribosomal protein S4 [Drimys granadensis] Length = 201 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTRKRPRS----GSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + + ++ +++S+ Sbjct: 116 ILVNGRIVDIPSYRCKPQDIITTRDEQRSRALIQNYMDSSPHEELAKHLSLYSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQIIDIK---WIGLKINELLVVEYYSR 199 >gi|50843284|ref|YP_056511.1| 30S ribosomal protein S4 [Propionibacterium acnes KPA171202] gi|282855171|ref|ZP_06264503.1| ribosomal protein S4 [Propionibacterium acnes J139] gi|289424812|ref|ZP_06426594.1| ribosomal protein S4 [Propionibacterium acnes SK187] gi|289427659|ref|ZP_06429371.1| ribosomal protein S4 [Propionibacterium acnes J165] gi|295131353|ref|YP_003582016.1| ribosomal protein S4 [Propionibacterium acnes SK137] gi|61215507|sp|Q6A6R0|RS4_PROAC RecName: Full=30S ribosomal protein S4 gi|50840886|gb|AAT83553.1| 30S ribosomal protein S4 [Propionibacterium acnes KPA171202] gi|282581759|gb|EFB87144.1| ribosomal protein S4 [Propionibacterium acnes J139] gi|289154775|gb|EFD03458.1| ribosomal protein S4 [Propionibacterium acnes SK187] gi|289159150|gb|EFD07342.1| ribosomal protein S4 [Propionibacterium acnes J165] gi|291375309|gb|ADD99163.1| ribosomal protein S4 [Propionibacterium acnes SK137] gi|313763204|gb|EFS34568.1| ribosomal protein S4 [Propionibacterium acnes HL013PA1] gi|313773119|gb|EFS39085.1| ribosomal protein S4 [Propionibacterium acnes HL074PA1] gi|313793291|gb|EFS41349.1| ribosomal protein S4 [Propionibacterium acnes HL110PA1] gi|313801065|gb|EFS42333.1| ribosomal protein S4 [Propionibacterium acnes HL110PA2] gi|313808806|gb|EFS47260.1| ribosomal protein S4 [Propionibacterium acnes HL087PA2] gi|313810400|gb|EFS48114.1| ribosomal protein S4 [Propionibacterium acnes HL083PA1] gi|313812264|gb|EFS49978.1| ribosomal protein S4 [Propionibacterium acnes HL025PA1] gi|313816541|gb|EFS54255.1| ribosomal protein S4 [Propionibacterium acnes HL059PA1] gi|313817985|gb|EFS55699.1| ribosomal protein S4 [Propionibacterium acnes HL046PA2] gi|313819898|gb|EFS57612.1| ribosomal protein S4 [Propionibacterium acnes HL036PA1] gi|313823389|gb|EFS61103.1| ribosomal protein S4 [Propionibacterium acnes HL036PA2] gi|313824860|gb|EFS62574.1| ribosomal protein S4 [Propionibacterium acnes HL063PA1] gi|313828398|gb|EFS66112.1| ribosomal protein S4 [Propionibacterium acnes HL063PA2] gi|313830102|gb|EFS67816.1| ribosomal protein S4 [Propionibacterium acnes HL007PA1] gi|313832626|gb|EFS70340.1| ribosomal protein S4 [Propionibacterium acnes HL056PA1] gi|313837982|gb|EFS75696.1| ribosomal protein S4 [Propionibacterium acnes HL086PA1] gi|314914365|gb|EFS78196.1| ribosomal protein S4 [Propionibacterium acnes HL005PA4] gi|314917685|gb|EFS81516.1| ribosomal protein S4 [Propionibacterium acnes HL050PA1] gi|314919583|gb|EFS83414.1| ribosomal protein S4 [Propionibacterium acnes HL050PA3] gi|314925755|gb|EFS89586.1| ribosomal protein S4 [Propionibacterium acnes HL036PA3] gi|314930173|gb|EFS94004.1| ribosomal protein S4 [Propionibacterium acnes HL067PA1] gi|314957154|gb|EFT01258.1| ribosomal protein S4 [Propionibacterium acnes HL027PA1] gi|314957795|gb|EFT01898.1| ribosomal protein S4 [Propionibacterium acnes HL002PA1] gi|314960835|gb|EFT04936.1| ribosomal protein S4 [Propionibacterium acnes HL002PA2] gi|314963509|gb|EFT07609.1| ribosomal protein S4 [Propionibacterium acnes HL082PA1] gi|314964877|gb|EFT08976.1| ribosomal protein S4 [Propionibacterium acnes HL082PA2] gi|314969908|gb|EFT14006.1| ribosomal protein S4 [Propionibacterium acnes HL037PA1] gi|314973049|gb|EFT17145.1| ribosomal protein S4 [Propionibacterium acnes HL053PA1] gi|314975545|gb|EFT19640.1| ribosomal protein S4 [Propionibacterium acnes HL045PA1] gi|314979766|gb|EFT23860.1| ribosomal protein S4 [Propionibacterium acnes HL072PA2] gi|314984828|gb|EFT28920.1| ribosomal protein S4 [Propionibacterium acnes HL005PA1] gi|314986087|gb|EFT30179.1| ribosomal protein S4 [Propionibacterium acnes HL005PA2] gi|314988702|gb|EFT32793.1| ribosomal protein S4 [Propionibacterium acnes HL005PA3] gi|315077130|gb|EFT49197.1| ribosomal protein S4 [Propionibacterium acnes HL053PA2] gi|315079817|gb|EFT51793.1| ribosomal protein S4 [Propionibacterium acnes HL078PA1] gi|315083184|gb|EFT55160.1| ribosomal protein S4 [Propionibacterium acnes HL027PA2] gi|315086862|gb|EFT58838.1| ribosomal protein S4 [Propionibacterium acnes HL002PA3] gi|315089954|gb|EFT61930.1| ribosomal protein S4 [Propionibacterium acnes HL072PA1] gi|315090476|gb|EFT62452.1| ribosomal protein S4 [Propionibacterium acnes HL110PA4] gi|315093709|gb|EFT65685.1| ribosomal protein S4 [Propionibacterium acnes HL060PA1] gi|315096724|gb|EFT68700.1| ribosomal protein S4 [Propionibacterium acnes HL038PA1] gi|315097952|gb|EFT69928.1| ribosomal protein S4 [Propionibacterium acnes HL059PA2] gi|315100595|gb|EFT72571.1| ribosomal protein S4 [Propionibacterium acnes HL046PA1] gi|315104001|gb|EFT75977.1| ribosomal protein S4 [Propionibacterium acnes HL050PA2] gi|315106038|gb|EFT78014.1| ribosomal protein S4 [Propionibacterium acnes HL030PA1] gi|315109198|gb|EFT81174.1| ribosomal protein S4 [Propionibacterium acnes HL030PA2] gi|327325233|gb|EGE67038.1| ribosomal protein S4 [Propionibacterium acnes HL096PA2] gi|327325529|gb|EGE67328.1| ribosomal protein S4 [Propionibacterium acnes HL103PA1] gi|327332742|gb|EGE74476.1| ribosomal protein S4 [Propionibacterium acnes HL097PA1] gi|327451455|gb|EGE98109.1| ribosomal protein S4 [Propionibacterium acnes HL087PA3] gi|327451570|gb|EGE98224.1| ribosomal protein S4 [Propionibacterium acnes HL092PA1] gi|327451857|gb|EGE98511.1| ribosomal protein S4 [Propionibacterium acnes HL083PA2] gi|328752071|gb|EGF65687.1| ribosomal protein S4 [Propionibacterium acnes HL087PA1] gi|328755531|gb|EGF69147.1| ribosomal protein S4 [Propionibacterium acnes HL025PA2] gi|328756316|gb|EGF69932.1| ribosomal protein S4 [Propionibacterium acnes HL020PA1] gi|328761350|gb|EGF74877.1| ribosomal protein S4 [Propionibacterium acnes HL099PA1] Length = 201 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRGR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|46486542|gb|AAS98707.1| ribosomal protein subunit 4 [Rhytidiadelphus triquetrus] gi|80974182|gb|ABB53784.1| small ribosomal subunit protein 4 [Rhytidiadelphus triquetrus] Length = 199 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|51245003|ref|YP_064887.1| 30S ribosomal protein S4 [Desulfotalea psychrophila LSv54] gi|61215518|sp|Q6AP44|RS4_DESPS RecName: Full=30S ribosomal protein S4 gi|50876040|emb|CAG35880.1| probable 30S ribosomal protein S4 [Desulfotalea psychrophila LSv54] Length = 210 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR L+ + K R++ PG HGQ R K S + +QLR Sbjct: 1 MARNIGAVCRRCRRENLKLFLKGDRCYSDKCSFERRAFAPGQHGQARFKKVSDYAVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YG + E +FR F++A+ +G NL+ LE RLD V+RA F + ARQ Sbjct: 61 KQKVKSMYG-VLEAQFRLTFEKAEAQKGVAGENLLILLERRLDNAVFRAGFASSRTQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H+H+L+NG+ V+I SY+ EGDVI +++KS+ A V++ + + R VP ++ ++ D Sbjct: 120 IVRHKHILINGKRVDIPSYQVSEGDVISLREKSRANAGVVDNLEAVVRRGVPTWLELDKD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N A+ +P+ +++ P +Q L+VE YS+ Sbjct: 180 NFKASVKALPNR-EEITMP--IQERLIVELYSK 209 >gi|189501185|ref|YP_001960655.1| 30S ribosomal protein S4 [Chlorobium phaeobacteroides BS1] gi|226697822|sp|B3EP35|RS4_CHLPB RecName: Full=30S ribosomal protein S4 gi|189496626|gb|ACE05174.1| ribosomal protein S4 [Chlorobium phaeobacteroides BS1] Length = 203 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGVALSPKAEKYLEKRPYAPGEHGQSRRGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +K+A RG T NL+ LE R D +V+RA F P+ ARQ V H H Sbjct: 61 LYG-VLEKQFRNYYKKAVSQRGITGDNLVKLLERRFDNVVFRAGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +L+NG+ V+I SY K GD +E +QKS+ L +V ++ A + +P +I V+ + A F Sbjct: 120 LLINGKKVDIPSYLLKPGDAMEFRQKSQNLDAVADSMNRAPDSRIPSWIQVDKAHKKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++V P LVVE YS+ Sbjct: 180 LAVPER-EEVQEPF--NEQLVVELYSK 203 >gi|297179941|gb|ADI23950.1| small ribosomal protein 4 [Leucobryum sp. Vanderpoorten s.n.] Length = 197 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + K S + ++L KQK++ +YG I Sbjct: 1 GPRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 VNI SYRCK D I +K + K + V + + +++ VP +++ N +I Sbjct: 117 YIVNIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKYKVPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LNHESIGLKINELLVVEYYSR 195 >gi|328541128|gb|AEB21788.1| ribosomal protein S4 [Telaranea chaetocarpa] Length = 199 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G + K+ +Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGASPGLTSKTLKRKSNYN---DRSTLNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I+++ K K + + + L + +P +++ + + + +I Sbjct: 117 NNNIVDIPSYNCEPGDLIKIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSITLCGSINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + + + VVE+YSR Sbjct: 177 INR---EWINLKINELFVVEYYSR 197 >gi|222103466|gb|ACM44262.1| small ribosomal protein subunit 4 [Sanionia uncinata] Length = 202 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 119 VNNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 179 I---LDRESIGLKINELLVVEYYSR 200 >gi|46810994|gb|AAT01815.1| small ribosomal protein 4 [Blasia pusilla] Length = 197 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K + Y L+ K S + ++L KQK++ +YG I Sbjct: 1 GPRVKIIRRLGALPGLTNKILKSKSGY---LNPSTSNKKVSQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY CK D+I +K + K + + + ++ +P +++ + +I Sbjct: 117 INVDIPSYNCKPKDIITIKNRQKSQSIITKNLNSFQKSKIPNHLTFDLIQFKGLVNQIID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 R---EWINLKINELLVVEYYSR 195 >gi|163791292|ref|ZP_02185706.1| 30S ribosomal protein S4 [Carnobacterium sp. AT7] gi|159873433|gb|EDP67523.1| 30S ribosomal protein S4 [Carnobacterium sp. AT7] Length = 201 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K + +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-IERRPYAPGPHGPNSRKKLTEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++F ++F +A + + G N + LE RLD +VYR T +RQ VNH Sbjct: 60 MFG-MNERQFSNLFLKAGKIKEGKHGENFMILLEQRLDNVVYRLGLATTRRQSRQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY G VI V++KSK + + A++ + P+Y++ + + + ++ Sbjct: 119 HILVDGKRVDIPSYSVSVGQVISVREKSKNMEIIKSAAE-SLFGRPDYVTFDVEKLEGSY 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + ++VE+YSR Sbjct: 178 NRLPLRDE---LSAEIDETIIVEYYSR 201 >gi|294337138|emb|CAQ52719.1| ribosomal protein S4 [Heterocladium dimorphum] Length = 202 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E+RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPETRLDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIASYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + LVVE+YSR Sbjct: 177 NQI---LDRESIGSKINELLVVEYYSR 200 >gi|119947102|ref|YP_944782.1| ribosomal protein S4 [Psychromonas ingrahamii 37] gi|152060920|sp|A1T0B8|RS4B_PSYIN RecName: Full=30S ribosomal protein S4 B gi|119865706|gb|ABM05183.1| SSU ribosomal protein S4P [Psychromonas ingrahamii 37] Length = 206 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HG RK + S +GLQLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGVHG-ARKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KE+ R +G+T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKESARLQGNTGENLLQLLEGRLDNVVYRMGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ VLVNG+ VNI S+ K DVI +++K+K+ + + A ++A +R+VP ++SV+ M Sbjct: 119 SHKAVLVNGKVVNIPSFNVKASDVIAIREKAKKQSRIGAALEIAGQREVPTWVSVDATKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + L++E YS+ Sbjct: 179 EGIFTRQPER---SDLSAEINEQLIIELYSK 206 >gi|229552047|ref|ZP_04440772.1| ribosomal protein S4 [Lactobacillus rhamnosus LMS2-1] gi|229314624|gb|EEN80597.1| ribosomal protein S4 [Lactobacillus rhamnosus LMS2-1] Length = 239 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 37 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 95 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 96 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 154 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ ++I SY + G VI ++++S+ LA V EA + P Y++ + + + Sbjct: 155 HITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEAIENTVSR-PAYVTFDDNKKEGSL 213 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + P + +LVVE+Y Sbjct: 214 VRLPERGELEP---EVDESLVVEYY 235 >gi|6002019|emb|CAA58915.1| ribosomal protein S4 [Aechmea dealbata] Length = 196 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYEHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K + A +++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITAKDNQGSKGLIQNYIASSAHKELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|67035610|gb|AAY62736.1| small ribosomal protein subunit 4 [Eccremidium floridanum] Length = 199 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K + + +++ VP +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNLDFSQKYKVPNHLTFNFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|309389907|gb|ADO77787.1| SSU ribosomal protein S4P [Halanaerobium praevalens DSM 2228] Length = 208 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + S K+ RR GE L+ + K + R Y PG HGQ R K S +G QLR Sbjct: 1 MGRYTGSVCKLCRREGEKLYLKGARCYSDKCSFDRRPYVPGEHGQGRH-KVSEYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FR+ F++A+ G T N + LE RLD +VYR F + ARQ Sbjct: 60 KQKVRRIYG-IMEKQFRNYFEKAENIAGVTGENFLQLLERRLDNVVYRMGFASSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 FV H H+ VNGR V+I SY+ D I+VK S++ E + A+ E+++ + + Sbjct: 119 FVLHGHITVNGRKVDIPSYQIDIDDEIKVKDSSRKSKRFKEIFEYNADFASQEWLNSDLE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + +P +D+ YPV + +L+VE+YSR Sbjct: 179 KAEGTIIALPER-EDIDYPV--EEHLIVEYYSR 208 >gi|257054497|ref|YP_003132329.1| 30S ribosomal protein S4 [Saccharomonospora viridis DSM 43017] gi|256584369|gb|ACU95502.1| SSU ribosomal protein S4P [Saccharomonospora viridis DSM 43017] Length = 202 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I RR+ +L G K R Y PG HG+ R K S + LQL+ KQK + Sbjct: 1 MARYTGPATRISRRLKVDLVGNDK-AFERRPYPPGQHGRGR-VKESEYLLQLQEKQKARH 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I E++FR ++EA R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-ILERQFRRYYEEAARRPGKTGDNLLQLLESRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKS-KQLASVLEASQLAERDVPEYISVNHDNMVATF 179 LVNG VNI SYR + D+I+V+ KS K L V L ER +P ++ V N+ Sbjct: 118 FLVNGEKVNIPSYRVSKFDIIDVRPKSLKTLPFVAAKESLGERPIPAWLQVVPSNLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V +Q L+VEFYS+ Sbjct: 178 HQLPERAQ---IEVPVQEQLIVEFYSK 201 >gi|166239980|gb|ABY86508.1| ribosomal protein S4 [Lychnis chalcedonica] Length = 205 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 9/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RTGSDLRAQSRSGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGATGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD--NMVA 177 +LVNGR V+I SYRCK D I K + K + + ++P++++++ N A Sbjct: 116 ILVNGRIVDIPSYRCKPQDTIMAKDEQKSRVLIQNFLDSSPPEELPKHLTLDPFPYNNKA 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S + + LVVE+YSR Sbjct: 176 IIKEIIDS-NSKWVGLKINELLVVEYYSR 203 >gi|222103428|gb|ACM44243.1| small ribosomal protein subunit 4 [Ceratodon purpureus] Length = 199 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 2 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 57 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 58 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 117 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K +++ + +++ VP +++ N +I Sbjct: 118 DNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKSKVPNHLTFNSLENKGLVNQI- 176 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 --LDQESVGLKINELLVVEYYSR 197 >gi|46811056|gb|AAT01846.1| small ribosomal protein 4 [Symphyogyna hymenophyllum] Length = 197 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G L G + +RS G Q K S + ++L KQK++ +YG Sbjct: 1 GPRAKIIRRLGA-LPGLSHEMIGSRS---GYTNQLAANKKISQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN Sbjct: 56 LTERQLLKYVRIARGAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIP 183 +V+I SY CK DVI ++ + + + + + L ER +P +++ + + +I Sbjct: 116 DDTVDIPSYNCKPQDVITIRDRRESQSVITKNINLFRERRIPNHLTFDSTRFCGSVNQII 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 DR---EWIGLKINELLVVEYYSR 195 >gi|93213406|gb|ABF01129.1| ribosomal protein subunit 4 [Catagonium brevicaudatum] Length = 199 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103514|gb|ACM44286.1| small ribosomal protein subunit 4 [Iwatsukiella leucotricha] Length = 203 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|322719507|gb|ADX07690.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] gi|322719511|gb|ADX07692.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] gi|322719513|gb|ADX07693.1| small ribosomal protein subunit 4 [Codriophorus fascicularis] Length = 198 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNIYFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|168205206|ref|ZP_02631211.1| ribosomal protein S4 [Clostridium perfringens E str. JGS1987] gi|169347013|ref|ZP_02865955.1| ribosomal protein S4 [Clostridium perfringens C str. JGS1495] gi|169296696|gb|EDS78825.1| ribosomal protein S4 [Clostridium perfringens C str. JGS1495] gi|170663240|gb|EDT15923.1| ribosomal protein S4 [Clostridium perfringens E str. JGS1987] Length = 206 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K RSY PG HG RK K S +G QLR Sbjct: 1 MARYTGATCKLCRREGMKLFLKGDRCYTDKCAFVRRSYAPGQHGASRK-KLSNYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + E +FR+ ++ A++ RG NL+ LE RLD +VYR + + ARQ Sbjct: 60 KQKAKRIYG-VLEGQFRNTYERAEKMRGIAGENLLKLLEMRLDNVVYRLGYGASRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 VNH H LVNG+ V+I S++ DV+ V +KS+ ++ + +P+++ N +N Sbjct: 119 LVNHGHFLVNGKKVDIASFKVSVNDVVTVCEKSRGSERFKMFAENP-KALPKWLEANVEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V P+ +D+ PV L+VE YS+ Sbjct: 178 FEGKVVAEPAR-EDIDVPV--NETLIVELYSK 206 >gi|26399180|sp|Q9FT08|RR4_BUCRO RecName: Full=30S ribosomal protein S4, chloroplastic gi|10798455|emb|CAC12803.1| small ribosomal protein 4 [Bucegia romanica] Length = 202 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR+G K P G Q K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTNKIPQLK----SGYTNQSVSNKKISQYRIRLEEKQKLR 56 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I+E++ + A ++G T + E RLD I++R PTI ARQ VNHR Sbjct: 57 FHYG-ITERQLLKYVRIARGAKGSTGQISLQSSEMRLDNIIFRLGIAPTIPGARQLVNHR 115 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVAT 178 H+LVN VNI SYRCK D I +K K + + +L+++ +P +++ N Sbjct: 116 HILVNNNIVNIPSYRCKPQDFITIKNSQKSQTIITKNIELSQKYQIPNHLTFNSLEKKGL 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 VNQI---LDRESIGLKINELLVVEYYSR 200 >gi|322719481|gb|ADX07677.1| small ribosomal protein subunit 4 [Racomitrium barbuloides] gi|322719483|gb|ADX07678.1| small ribosomal protein subunit 4 [Racomitrium barbuloides] gi|322719485|gb|ADX07679.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] gi|322719487|gb|ADX07680.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] gi|322719489|gb|ADX07681.1| small ribosomal protein subunit 4 [Niphotrichum ericoides] Length = 198 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLAFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|319639573|ref|ZP_07994320.1| 30S ribosomal protein S4 [Neisseria mucosa C102] gi|317399144|gb|EFV79818.1| 30S ribosomal protein S4 [Neisseria mucosa C102] Length = 206 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG +K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIVVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LSGDINEQLVVEFYSK 206 >gi|241759655|ref|ZP_04757756.1| ribosomal protein S4 [Neisseria flavescens SK114] gi|241320027|gb|EER56408.1| ribosomal protein S4 [Neisseria flavescens SK114] Length = 206 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG +K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ D + Sbjct: 119 SHKAIIVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALSLATQIGLPSWVSVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LSGDINEQLVVEFYSK 206 >gi|157964424|ref|YP_001499248.1| 30S ribosomal protein S4 [Rickettsia massiliae MTU5] gi|157844200|gb|ABV84701.1| 30S ribosomal protein S4 [Rickettsia massiliae MTU5] Length = 227 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 29 SKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 88 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 89 EKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 148 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R K GDVIEVK+ KQ+ + E+ + P Y+S + ++ ++R+P+ L Sbjct: 149 KADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQTTPGYLSFDVPSLTGKYLRVPA-L 207 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 208 SDVPYPFEAEVHLVIELYSR 227 >gi|12642232|gb|AAK00198.1| rps4 [Physcomitrium lorentzii] Length = 188 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 9/194 (4%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 R+G K+P S Q K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RLGVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNY 55 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I SY Sbjct: 56 VRIARKAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSY 115 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 RCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 RCKPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIG 172 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 LKINELLVVEYYSR 186 >gi|63191691|gb|AAY34807.1| small ribosomal protein subunit 4 [Pterogonium gracile] Length = 199 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103460|gb|ACM44259.1| small ribosomal protein subunit 4 [Ceratodon purpureus] Length = 198 Score = 251 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SYRCK D I +K + K +++ + +++ VP +++ N +I Sbjct: 117 DNIVNIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKSKVPNHLTFNSLENKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESVGLKINELLVVEYYSR 196 >gi|325104842|ref|YP_004274496.1| SSU ribosomal protein S4P [Pedobacter saltans DSM 12145] gi|324973690|gb|ADY52674.1| SSU ribosomal protein S4P [Pedobacter saltans DSM 12145] Length = 202 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G K + ++Y PG HG +R+ K S + +QL KQK+K Sbjct: 1 MARYTGPKSKIARKFREPIFGPDK-ALERKNYPPGQHGPSKRRGKQSEYSIQLTEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F ++FK+A G NL+ LE+RLD +VYR T AARQ V+HR Sbjct: 60 YTYG-VLEKQFSNLFKKASAKGGIAGTNLLQLLEARLDNVVYRLGIATTRSAARQLVSHR 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LVNG VNI S+ + GDVIEV++KSK L ++ + + ++ + N+ F Sbjct: 119 HILVNGELVNIPSFSVRPGDVIEVREKSKSLEAITNSVAGRTINKYSWLEWDSKNLTGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P P ++ NL+VE YS+ Sbjct: 179 IQFPDR---ESIPENIKENLIVELYSK 202 >gi|46486550|gb|AAS98711.1| ribosomal protein subunit 4 [Mniodendron comatulum] Length = 199 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTAQLKSSFI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ ++ +I Sbjct: 117 NDRLVDIPSYRCKPQDFITIKNRQKSQAIISKNLDFYQKYKIPNHLTYSYLEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63191689|gb|AAY34806.1| small ribosomal protein subunit 4 [Loeskypnum badium] Length = 199 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P L+ K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK---SSSLNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|91205656|ref|YP_538011.1| 30S ribosomal protein S4 [Rickettsia bellii RML369-C] gi|157826887|ref|YP_001495951.1| 30S ribosomal protein S4 [Rickettsia bellii OSU 85-389] gi|122425523|sp|Q1RI92|RS4_RICBR RecName: Full=30S ribosomal protein S4 gi|172047819|sp|A8GVN7|RS4_RICB8 RecName: Full=30S ribosomal protein S4 gi|91069200|gb|ABE04922.1| 30S ribosomal protein S4 [Rickettsia bellii RML369-C] gi|157802191|gb|ABV78914.1| 30S ribosomal protein S4 [Rickettsia bellii OSU 85-389] Length = 205 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 139/206 (67%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HG+ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGRNTMVKTSDYGLHLKAKQRIKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+EK+FR+IF A + +G+T N I LESRLD+IVYR PTIF++RQ ++H H Sbjct: 61 HYGRITEKQFRNIFGFAQKMKGNTGENFIGLLESRLDSIVYRMNIAPTIFSSRQLISHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ +I S R KEGDVIE+K+ S+Q+ + E+ + P+Y+S + D++ ++ Sbjct: 121 IKVNGKKADIASMRLKEGDVIEIKEASRQMGIIQESVSKQGQTTPDYVSFDVDSLSGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P ++ DV YP + +LVVE YSR Sbjct: 181 RVP-TISDVRYPFTPEVHLVVELYSR 205 >gi|63191704|gb|AAY34813.1| small ribosomal protein subunit 4 [Orthomnion elimbatum] Length = 200 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVRIIRRLGALPGPTNKTPHLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K + + ++ +P +++ N N + Sbjct: 117 VNDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKYKIPNHLTYNSLNKKGLVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRNSIDLKINELLVVEYYSR 198 >gi|26399110|sp|P59145|RR4_HYPLA RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504361|emb|CAC81024.1| small ribosomal protein 4 [Hypopterygium laricinum] Length = 202 Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D I +K + K A + + + ++ +P +++ + Sbjct: 117 ILVNGYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LNRKSIGLKINELLVVEYYSR 200 >gi|77862543|gb|ABB04544.1| small ribosomal protein 4 [Monosolenium tenerum] Length = 201 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K + Y + K S + ++L KQK++ Y Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKILKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFY 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVGIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N +V+I SY CK DVI +K + K + V + ++ +P ++S + + Sbjct: 117 LINNNTVDIPSYNCKPKDVITIKDRPKSQSIVKKNLNSFQKSKIPNHLSFDLMQVQGLVH 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|46486578|gb|AAS98725.1| ribosomal protein subunit 4 [Mniodendron dendroides] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S+ + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTAQLKSSFI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ ++ +I Sbjct: 117 NDRLVDIPSYRCKPQDFITIKNRQKSQAIISKNLDFYQKYKIPNHLTYSYLEKKGFVTQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035974|gb|AAY62913.1| small ribosomal protein subunit 4 [Porothamnium arbusculans] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|77862535|gb|ABB04540.1| small ribosomal protein 4 [Mannia fragrans] Length = 201 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N ++I SY CK D+I +K + K + + ++ +P +++ + + Sbjct: 117 LINNNPIDIPSYNCKPKDIITIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLVQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|3098192|gb|AAC15544.1| small ribosomal protein 4 [Bartramia stricta] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGLRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 NDHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|47606926|gb|AAT36383.1| ribosomal protein subunit 4 [Pyrrhobryum dozyanum] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ YYG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFYYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITEQQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKYKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|257417204|ref|ZP_05594198.1| 30S ribosomal protein S4 [Enterococcus faecalis AR01/DG] gi|257159032|gb|EEU88992.1| 30S ribosomal protein S4 [Enterococcus faecalis ARO1/DG] Length = 203 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 119/205 (58%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KS+ ++++ EA + + P ++S + + + +F Sbjct: 119 HITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVE-STVGRPAFVSFDTEKLEGSF 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P D YP + LVVE+Y Sbjct: 178 TRLPER--DELYP-EIDEALVVEYY 199 >gi|11121337|emb|CAC14830.1| ribosomal protein subunit 4 [Plagiothecium undulatum] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|320335497|ref|YP_004172208.1| 30S ribosomal protein S4 [Deinococcus maricopensis DSM 21211] gi|319756786|gb|ADV68543.1| ribosomal protein S4 [Deinococcus maricopensis DSM 21211] Length = 205 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 123/209 (58%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M + S K RR G NL K ++ R Y PG HGQRRK +PS + ++LR KQK+ Sbjct: 1 MGRFRGSITKQSRREGINLAETEKVQKYLDRRPYAPGQHGQRRKGRPSDYSVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SEK+FR++F+EA G T + FLE RLD +++R T ARQFV H Sbjct: 61 ARLYG-VSEKQFRNLFEEAANIPGVTGTVFLQFLERRLDNVIFRLGIASTRRQARQFVAH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVA 177 H+LVNG+ +++ SYR K GDVI V ++S+Q +LE + A+ R V ++ N + Sbjct: 120 GHILVNGKLLDVPSYRVKIGDVITVAERSRQNGFILENMEAAKRRRVSPWLEFNTETFTG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +FVR+P+ + + N ++EFYSR Sbjct: 180 SFVRLPAR---EDLALPINENFIIEFYSR 205 >gi|222103492|gb|ACM44275.1| small ribosomal protein subunit 4 [Sanionia uncinata] Length = 203 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 4 RYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+L Sbjct: 61 G-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 120 VNNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LNRESIGLKINELLVVEYYSR 201 >gi|46811024|gb|AAT01830.1| small ribosomal protein 4 [Jungermannia leiantha] Length = 197 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTSKVLKPKSSYI---DRSTSNKKISQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + + Sbjct: 117 DIVDIPSYNCELGDIIAVKNKQKSQSIITKNINLFQKSKIPSHLTFDSAKLHGSVNQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWVHLKINELLVVEYYSR 195 >gi|67035797|gb|AAY62829.1| small ribosomal protein subunit 4 [Orthostichopsis tetragona] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NHCIVDIPSYRCKPHDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|119358165|ref|YP_912809.1| 30S ribosomal protein S4 [Chlorobium phaeobacteroides DSM 266] gi|152060943|sp|A1BJ08|RS4_CHLPD RecName: Full=30S ribosomal protein S4 gi|119355514|gb|ABL66385.1| SSU ribosomal protein S4P [Chlorobium phaeobacteroides DSM 266] Length = 203 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R + PG HGQ RK K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALSPKAEKYLERRPFAPGQHGQSRKGKISEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E +FRS +++A RG T NL+ LE R D +V+R+ F + AARQ V H H Sbjct: 61 LYG-VLENQFRSYYRKAVSQRGVTGDNLVKLLERRFDNVVFRSGFAASRSAARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 + +NG+ VNI SY G++IE +QKSK + +V ++ A + +P +I V+ N A F Sbjct: 120 LTINGKKVNIPSYLLTPGELIEFRQKSKNMGAVTDSLNKAPDARIPSWIQVDKANQKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P ++V P LVVE YS+ Sbjct: 180 LSVPER-EEVQEPF--NEQLVVELYSK 203 >gi|121761857|gb|ABM65014.1| ribosomal protein S4 [Plagiomnium cf. cuspidatum Wyatt 1774] gi|121761865|gb|ABM65018.1| ribosomal protein S4 [Plagiomnium cf. cuspidatum Wyatt 1832] Length = 199 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D+I +K + K + + ++ +P +++ N N +I Sbjct: 117 NDRLVNIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRDFIDLKINELLVVEYYSR 197 >gi|59803299|gb|AAX07758.1| Rps4 [Haplomitrium gibbsiae] Length = 202 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+P + G K S + ++L KQK++ Sbjct: 1 MSRXRGPRSKIIRRLGSLPGLTNKAP---KPRPGGTDQSIANKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++ R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNVISRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +L+N ++V+I S C+ GD+I V+ ++ + E + ++R P +++++ + Sbjct: 117 ILLNDKTVDIPSCNCEPGDIITVRDRAGSRPVIAEGTDPSQRSRTPNHLNLDSARNMGFV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NQIIDR---EWISLKINELLVVEYYSR 200 >gi|66990660|emb|CAI29108.1| small ribosomal protein 4 [Plagiochila squamulosa] Length = 198 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 8/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSL 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 ++ ++ + + L VE+Y Sbjct: 177 NQMINA---EWINLKINELLAVEYY 198 >gi|146261577|gb|ABQ15098.1| ribosomal protein S4 [Penthorum sedoides] Length = 196 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 103/202 (50%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K RR+G K P G L Q R K S + ++L KQK++ +YG + Sbjct: 1 GPRFKKIRRLGALPGLTSKRP----RVGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-L 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNG 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D+I K + K A + L+ ++P+++++ +I Sbjct: 116 RIVDIPSYRCKPRDIITAKDEQKSRAMIQNYLDLSPHEELPKHLTLQPFQYKGLVNQIID 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 KN---WVGLKINELLVVEYYSR 194 >gi|15604213|ref|NP_220728.1| 30S ribosomal protein S4 [Rickettsia prowazekii str. Madrid E] gi|6226104|sp|Q9ZDI3|RS4_RICPR RecName: Full=30S ribosomal protein S4 gi|3860905|emb|CAA14805.1| 30S RIBOSOMAL PROTEIN S4 (rpsD) [Rickettsia prowazekii] gi|292571953|gb|ADE29868.1| 30S ribosomal protein S4 [Rickettsia prowazekii Rp22] Length = 205 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ++EK+FR+IF A R +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 YYGRVTEKQFRNIFALAQRMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGD+IE+K+ +Q+ + E+ + P Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDIIEIKESIQQIPLIQESISKQGQTTPGYLSFDIPSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPA-LSDVPYPFEAEVHLVIELYSR 205 >gi|229823967|ref|ZP_04450036.1| hypothetical protein GCWU000282_01271 [Catonella morbi ATCC 51271] gi|229786321|gb|EEP22435.1| hypothetical protein GCWU000282_01271 [Catonella morbi ATCC 51271] Length = 202 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 119/207 (57%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L K + R+Y PG HG +RK K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKLSRRLGISLSETGKE-LARRNYAPGQHGNQRK-KISEYGLQLQEKQKLRH 58 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F++A + + G N ++ LE+RLD +VYR F T ARQ VNH Sbjct: 59 TYG-MNERQFATLFRKAGKIKTGKHGENFMALLETRLDNLVYRLGFATTRRQARQLVNHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV V+G+ V+I SY G VI +++ S+ LA + EA + + +++S + T Sbjct: 118 HVTVDGKRVDIPSYLVTPGQVIGLRESSRDLAIIKEALENTVSRL-DFVSYDAAAFEGTL 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y++ Sbjct: 177 TRLPERSE---LNAEIDEALVVEYYNK 200 >gi|49182815|gb|AAT57869.1| small ribosomal protein [Trichocolea tomentosa] Length = 195 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYMRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNEI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDTITIRNKQKSQSMITKNINLFQKLKIPSHLTFDLTQLQGSVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|222103532|gb|ACM44295.1| small ribosomal protein subunit 4 [Gollania varians] Length = 203 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 2 MSPVRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH Sbjct: 59 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 118 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSSLEKKGLV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 178 NQI---LDRESIGLKINELLVVEYYSR 201 >gi|12642210|gb|AAK00187.1| rps4 [Timmia austriaca] Length = 195 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P + + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKNRQKSQAIIMKNIDFSQKYKVPNHLTFNSLQKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|66866225|gb|AAY57783.1| small ribosomal protein 4 [Meesia triquetra] Length = 206 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 13/210 (6%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 59 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMV 176 VN R V+I SYRCK D I +K + K A + + + ++ +P +++ N Sbjct: 118 VNDRIVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNIEFYQKYKIPNHLTYNSLKKQ 177 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 178 GLVNQI---LNRESIDLKINELLVVEYYSR 204 >gi|46811026|gb|AAT01831.1| small ribosomal protein 4 [Lepicolea attenuata] Length = 197 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+ K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKLIRRLXAXPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 DIVDIPSYNCEPGDIITIRNKEKSQSIITKNINLFQNLKIPSHLTFDSTKLRGSITQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWITLKINELLVVEYYSR 195 >gi|51473540|ref|YP_067297.1| 30S ribosomal protein S4 [Rickettsia typhi str. Wilmington] gi|61215500|sp|Q68X27|RS4_RICTY RecName: Full=30S ribosomal protein S4 gi|51459852|gb|AAU03815.1| 30S ribosomal protein S4 [Rickettsia typhi str. Wilmington] Length = 205 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 137/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M+K SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKC 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG ++EK+FR+ F A R +G+T N I LESRLDT+VYR PTIFAARQ V+H H Sbjct: 61 YYGRVTEKQFRNTFALAQRMQGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + +NG+ +I S R KEGD+IE+K+ +Q+ + E+ + P+Y+S + ++ ++ Sbjct: 121 IKLNGKKADIASIRLKEGDIIEIKESIQQIPLIQESIAKQGQTTPKYLSFDVSSLTGKYL 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ L DVPYP + +LV+E YSR Sbjct: 181 RVPA-LSDVPYPFEAEVHLVIELYSR 205 >gi|159902949|ref|YP_001550293.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9211] gi|226699105|sp|A9BE29|RS4_PROM4 RecName: Full=30S ribosomal protein S4 gi|159888125|gb|ABX08339.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9211] Length = 202 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RS PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSNPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARSLEGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG+ ++I SY+CK GDVI +++K + +VP ++ M A Sbjct: 117 VTVNGKVLDIASYQCKPGDVISIREKKGSKKLAEGNLEFPGLANVPPHLEFEKSKMSAKI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 TG---KCEREWVAIEINELLVVEYYSR 200 >gi|322719543|gb|ADX07708.1| small ribosomal protein subunit 4 [Grimmia unicolor] gi|322719545|gb|ADX07709.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719547|gb|ADX07710.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719549|gb|ADX07711.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719551|gb|ADX07712.1| small ribosomal protein subunit 4 [Grimmia longirostris] gi|322719553|gb|ADX07713.1| small ribosomal protein subunit 4 [Grimmia donniana] Length = 198 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD ++++ PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFQLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + + A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQESQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|326332226|ref|ZP_08198506.1| ribosomal protein S4 [Nocardioidaceae bacterium Broad-1] gi|325949932|gb|EGD41992.1| ribosomal protein S4 [Nocardioidaceae bacterium Broad-1] Length = 202 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+G +L G + R Y PG HG+ R K S + LQLR KQK + Sbjct: 1 MARYTGPMTRKSRRLGVDLVGND-AAFEKRPYPPGQHGRGR-IKESEYLLQLREKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F S + EA R G T NL+ LE RLD +VYRA F T ARQ V H H Sbjct: 59 TYG-VMEKQFASYYAEAHRRDGKTGDNLLQLLEGRLDNVVYRAGFARTRRQARQLVVHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 LVNG+ VN+ S++ DVI+V++KS ++ + A + ER VP ++ M Sbjct: 118 FLVNGKKVNVPSFQVSAHDVIDVREKSLEMTPFIVARETHGERVVPAWLEAVPSRMRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V +Q L+VE+YS+ Sbjct: 178 HQLPVRAQ---IDVPVQEQLIVEYYSK 201 >gi|63191741|gb|AAY34830.1| small ribosomal protein subunit 4 [Calomnion complanatum] Length = 200 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 2 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 118 NDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKYKIPNHLTYNSLEKKGLVNQI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LDRESIGLKINELLVVEYYSR 198 >gi|300770226|ref|ZP_07080105.1| 30S ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33861] gi|300762702|gb|EFK59519.1| 30S ribosomal protein S4 [Sphingobacterium spiritivorum ATCC 33861] Length = 202 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G K + ++Y PG HG +R+ K S + +QL KQK K Sbjct: 1 MARYTGPKSKIARKFREPIFGPDK-ALEKKNYPPGQHGPSKRRGKQSEYAIQLLEKQKAK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++F ++F +A +G T N + LE+RLD VYR PT AARQ V+H+ Sbjct: 60 YTYG-VLERQFSNLFVKAAAKQGITGENFLKLLEARLDNTVYRLGIAPTRAAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY + GDVI V+++S+ L +V + + + + ++ N + TF Sbjct: 119 HITVNGGVVNIPSYSLRPGDVIAVRERSQALEAVTTSVEGRKINKFAWLEWNANEFKGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P P ++ NL+VE YS+ Sbjct: 179 LSYPERTD---IPENIKENLIVELYSK 202 >gi|67035813|gb|AAY62837.1| small ribosomal protein subunit 4 [Catagoniopsis berteroana] Length = 199 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|294337116|emb|CAQ52708.1| ribosomal protein S4 [Forsstroemia trichomitria] Length = 202 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPCVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|238788888|ref|ZP_04632678.1| 30S ribosomal protein S4 [Yersinia frederiksenii ATCC 33641] gi|238792959|ref|ZP_04636589.1| 30S ribosomal protein S4 [Yersinia intermedia ATCC 29909] gi|238722915|gb|EEQ14565.1| 30S ribosomal protein S4 [Yersinia frederiksenii ATCC 33641] gi|238727813|gb|EEQ19337.1| 30S ribosomal protein S4 [Yersinia intermedia ATCC 29909] Length = 202 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 16/210 (7%) Query: 5 ESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 K K+ RR G +L+ + K + PG HG RK + S +G+QLR KQK Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---PPGQHG-ARKPRLSDYGVQLREKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V+ Sbjct: 57 VRRIYG-VLERQFRNYYKEAARLKGNTGANLLQLLEGRLDNVVYRMGFGATRAESRQLVS 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMV 176 H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 116 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAVKME 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 176 GVFKRIPERTD---LSADINEHLIVELYSK 202 >gi|228016595|gb|ACP51425.1| ribosomal protein S4 [Abies firma] Length = 201 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRP----KYRNDSINRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +RD+ P +++ N Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRDILPNHLTFNSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|34580606|ref|ZP_00142086.1| 30S ribosomal protein S4 [Rickettsia sibirica 246] gi|28261991|gb|EAA25495.1| 30S ribosomal protein S4 [Rickettsia sibirica 246] Length = 224 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 26 SKYKASRRLGVSLWGDGKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 85 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 86 EKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 145 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R K GDVIEVK+ KQ+ + E+ + P Y+S + ++ ++R+P+ L Sbjct: 146 KADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQTTPGYLSFDVPSLTGKYLRVPA-L 204 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 205 SDVPYPFEAEVHLVIELYSR 224 >gi|317153933|ref|YP_004121981.1| 30S ribosomal protein S4 [Desulfovibrio aespoeensis Aspo-2] gi|316944184|gb|ADU63235.1| ribosomal protein S4 [Desulfovibrio aespoeensis Aspo-2] Length = 208 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 116/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K K+ RR G L+ + K R Y PG G+ R K S + +QLR Sbjct: 1 MARYTEAKCKLCRREGTKLFLKGDRCYTDKCAYEKRPYPPGHAGRMRH-KMSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR+ ++ AD +G T HNL+ LE RLD +++R F + ARQ Sbjct: 60 KQKVRRMYG-ILEGQFRAYYERADGMKGVTGHNLLMLLERRLDNVIFRLGFANSRDQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VN+ S + K DVI+V+++++++ + EA + +A R P+++ + Sbjct: 119 LVRHGIFQLNGRRVNVPSMQVKAEDVIQVREEARKIPVINEAQEVIARRGCPDWLESDGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N T +PS + L+VE YS+ Sbjct: 179 NFKGTVKAMPSRDN---IQFPINEQLIVELYSK 208 >gi|257483209|ref|ZP_05637250.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012437|gb|EGH92493.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 206 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ V VNG++VN+ SY+ + GDV+ +++K+K +++A L A+R E++ V+ +N Sbjct: 119 SHKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTENK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|222103434|gb|ACM44246.1| small ribosomal protein subunit 4 [Trachycystis microphylla] gi|222103454|gb|ACM44256.1| small ribosomal protein subunit 4 [Trachycystis microphylla] Length = 197 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGVLPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 RLVDIPSYRCKPQDFIAIKDRQKSQTIISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIDLKINELLVVEYYSR 195 >gi|328541042|gb|AEB21745.1| ribosomal protein S4 [Lembidium nutans] Length = 199 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDIITIRDKQKSQSVITKNINLFQNLKIPSHLTFDSIKLSGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINRESIDLKINELLVVEYYSR 197 >gi|24473806|gb|AAL82746.1| small ribosomal subunit protein 4 [Acidodontium megalocarpum] Length = 199 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDFITIKDQQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|160915194|ref|ZP_02077407.1| hypothetical protein EUBDOL_01202 [Eubacterium dolichum DSM 3991] gi|158432993|gb|EDP11282.1| hypothetical protein EUBDOL_01202 [Eubacterium dolichum DSM 3991] Length = 200 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G ++ + + R+Y PG HG ++ K + +GLQLR KQK++ Sbjct: 1 MSRINGPVWKTSRRLGFSILETGEE-LQRRAYAPGQHGPTKRVKLTQYGLQLREKQKIRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F ++F +A + +G N ++ LESRLD +VYR F T AARQ VNH H Sbjct: 60 MYG-LNERQFYNLFTKASKMKGVKGDNFLALLESRLDNLVYRMGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SY K G VIEVK+KSK L + EA + + V ++ VN D T++ Sbjct: 119 ILVNGKKVDIPSYIAKPGAVIEVKEKSKNLQVINEALEASLNTV-AFVDVNKDAKKGTYL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVEFY+R Sbjct: 178 RLPERNE---LNSEINELLVVEFYNR 200 >gi|63191739|gb|AAY34829.1| small ribosomal protein subunit 4 [Mesochaete undulata] Length = 199 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N + V+I SY+CK D I +K + K A + + ++ +P ++ + +I Sbjct: 117 NDQIVDIPSYQCKPQDFITIKDRQKSQAIISKNIYFYQKYKIPNHLIYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|322719571|gb|ADX07722.1| small ribosomal protein subunit 4 [Grimmia elongata] Length = 198 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSLI---NQSASNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAIIIKNMNFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|63191673|gb|AAY34798.1| small ribosomal protein subunit 4 [Levierella fabroniacea] gi|67036090|gb|AAY62971.1| small ribosomal protein subunit 4 [Actinothuidium hookeri] gi|67036096|gb|AAY62974.1| small ribosomal protein subunit 4 [Boulaya mitteni] Length = 199 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|548874|sp|P36470|RR4_RHAHU RecName: Full=30S ribosomal protein S4, chloroplastic gi|439964|emb|CAA82454.1| ribosomal protein S4 [Rhapis humilis] Length = 196 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRP----KSGSDLKTQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNYIASPPPEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|294337236|emb|CAQ52767.1| ribosomal protein S4 [Pinnatella mucronata] Length = 202 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTPQLESSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T + E R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVSLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D+I +K + K + + + ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDLITIKDQRKSETIISKNMEFYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|46486576|gb|AAS98724.1| ribosomal protein subunit 4 [Hypnodendron spininervium] Length = 197 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K +SK + + ++ +P +++ + +I Sbjct: 117 HIVDIPSYRCKPQDFITIKDRSKSQTIISKNIDFYQKYKIPNHLTYSSLEKKGFVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|63100987|gb|AAY33118.1| small ribosomal protein 4 [Callicladium haldanianum] gi|67035819|gb|AAY62840.1| small ribosomal protein subunit 4 [Eurohypnum leptothallum] gi|222103512|gb|ACM44285.1| small ribosomal protein subunit 4 [Iwatsukiella leucotricha] Length = 199 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|157689532|gb|ABV65322.1| ribosomal protein S4 [Oxalis latifolia] Length = 201 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P S+ Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKKPNAVNSF----RNQSRLGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGPTGRVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 V VNGR V+I SYRCK D I + + K A + + ++P+++++ Sbjct: 116 VFVNGRVVDIPSYRCKPRDFITPRNEQKSRALIRNYLDSSTHEELPKHLTLYPLQCKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|66866210|gb|AAY57778.1| small ribosomal protein 4 [Breutelia pendula] Length = 207 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 13/210 (6%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMV 176 VN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 119 VNDRIVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNIDFYQKYKIPNHLTYNSLENK 178 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 179 GLVNQI---LDRESIGLKINELLVVEYYSR 205 >gi|295398656|ref|ZP_06808680.1| 30S ribosomal protein S4 [Aerococcus viridans ATCC 11563] gi|294973091|gb|EFG48894.1| 30S ribosomal protein S4 [Aerococcus viridans ATCC 11563] Length = 203 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+G ++ G K + R Y PG HG R++K S +GLQL+ KQK++ Sbjct: 1 MSRFTGSNWKVSRRLGISISGTGKE-IARRPYAPGEHGNGRRAKLSEYGLQLQEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++EK+F ++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 IYG-MNEKQFANLFVQAGKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I S+R + G VI V++KSK + + EA + VP Y+ + + + + Sbjct: 119 HITVDGKRVDIPSFRVQPGQVISVREKSKDVKVIKEAVEGLYGHVP-YVQFDAEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R+P + + +LVVE+Y++ Sbjct: 178 IRLPQRDE---MNQEIDESLVVEYYNK 201 >gi|222103556|gb|ACM44307.1| small ribosomal protein subunit 4 [Brachythecium salebrosum] Length = 203 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 61 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 120 VNDCIVDIPSYRCKPQDFITIKNQRKSETVINKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LDRESIGLKINELLVVEYYSR 201 >gi|260663356|ref|ZP_05864247.1| 30S ribosomal protein S4 [Lactobacillus fermentum 28-3-CHN] gi|260552208|gb|EEX25260.1| 30S ribosomal protein S4 [Lactobacillus fermentum 28-3-CHN] Length = 197 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 7/203 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ ++ RR+G +L G K + R Y PG HG R+ K S +G QLR KQK++ Sbjct: 1 MSRYTGPSWRLSRRLGVSLSGTGKE-LARRPYAPGDHGNDRRGKLSEYGTQLREKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MTERQFSNLFVRAGKIKEGTHGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G VI V++KSK L + A + A P Y+ + D + Sbjct: 119 HITVDGKRVDIPSYEVKVGQVIAVREKSKNLDVIKGAVE-AVVARPAYVEFDADKLEGKL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVE 202 R+P + L+VE Sbjct: 178 TRLPQR---EDMNADIDEALIVE 197 >gi|6002017|emb|CAA58914.1| ribosomal protein S4 [Acorus calamus] Length = 196 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K TR G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTSKG---TRP-GSDLRNQFRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R PTI ARQ +NHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLLNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + + + R ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKVLIQNNMDSSTREELPKHLTLDSFQHKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WVGLKINELLVVEY 196 >gi|77862541|gb|ABB04543.1| small ribosomal protein 4 [Monoclea gottschei] Length = 201 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSISNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK D+I +K + K + + ++ +P +++ + + Sbjct: 117 LINNNPVDIPSYNCKPKDIITIKDRPKSKLIITKNLNSFQKQKIPNHLTFDLIQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|220906440|ref|YP_002481751.1| 30S ribosomal protein S4 [Cyanothece sp. PCC 7425] gi|254764583|sp|B8HXV1|RS4_CYAP4 RecName: Full=30S ribosomal protein S4 gi|219863051|gb|ACL43390.1| ribosomal protein S4 [Cyanothece sp. PCC 7425] Length = 204 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + ++ RR+G+ K+ + R+Y PG HGQ RK K S + ++L KQK++ Sbjct: 1 MARYRGPRLRVIRRLGDLPGLTRKAVPSRRAYPPGQHGQARK-KRSEYAMRLEEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ + A R G T L+ LE RLD I++R PTI AARQ VNH H Sbjct: 60 NYG-LTERQLVRYVRRARRVSGSTGLALLQLLEMRLDNIIFRLGMAPTIPAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR V+I SY+C+ G+ I ++ K E + ++P ++ ++ + ++A Sbjct: 119 VTVNGRVVSIPSYQCRPGNEIGIRNKENSRRLAEENLKFPGLANLPTHLELDKNKLMAKV 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 179 NSV---VEREWVALQVNELLVVEYYSR 202 >gi|115391906|ref|YP_778494.1| ribosomal protein S4 [Jasminum nudiflorum] gi|122164969|sp|Q06RC7|RR4_JASNU RecName: Full=30S ribosomal protein S4, chloroplastic gi|110456227|gb|ABG74632.1| ribosomal protein S4 [Jasminum nudiflorum] Length = 203 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + + K RR+G KSP G L Q R K S + ++L KQK+ Sbjct: 1 MPRYLGPRFKKIRRLGALPGLTNKSP----KAGSDLRKQPRSRKKSQYRIRLEEKQKLCF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG + E + + + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LREYQLLNYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+ SYRCK D+I K K + + ++++P +++++ Sbjct: 116 ILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTLIQNSLGSSPQKELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|88704352|ref|ZP_01102066.1| 30S ribosomal protein S4 [Congregibacter litoralis KT71] gi|88701403|gb|EAQ98508.1| 30S ribosomal protein S4 [Congregibacter litoralis KT71] Length = 206 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRSLESKCKPESVPGQHG-ARRGRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T NL+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKEAARLKGATGENLLQLLESRLDNVVYRIGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 H+ +LVNG+ VNI SY+ K GDV+ +++K+K+ V A L A+R PE+I VN + + Sbjct: 119 AHKAILVNGKVVNIASYKVKAGDVVSLREKAKKQLRVQSAMALAAQRGEPEWIDVNVEKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A + P + + NL+VE YS+ Sbjct: 179 EAVYKAAPDRQE---LTSEINENLIVELYSK 206 >gi|301021164|ref|ZP_07185202.1| ribosomal protein S4 [Escherichia coli MS 196-1] gi|312972443|ref|ZP_07786617.1| ribosomal protein S4 [Escherichia coli 1827-70] gi|30043665|gb|AAP19385.1| 30S ribosomal subunit protein S4 [Shigella flexneri 2a str. 2457T] gi|299881640|gb|EFI89851.1| ribosomal protein S4 [Escherichia coli MS 196-1] gi|310334820|gb|EFQ01025.1| ribosomal protein S4 [Escherichia coli 1827-70] gi|315617098|gb|EFU97708.1| ribosomal protein S4 [Escherichia coli 3431] gi|320187017|gb|EFW61729.1| SSU ribosomal protein S4p (S9e) [Shigella flexneri CDC 796-83] gi|320191670|gb|EFW66320.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str. EC1212] gi|320195388|gb|EFW70015.1| SSU ribosomal protein S4p (S9e) [Escherichia coli WV_060327] gi|320199483|gb|EFW74073.1| SSU ribosomal protein S4p (S9e) [Escherichia coli EC4100B] gi|323154134|gb|EFZ40337.1| ribosomal protein S4 [Escherichia coli EPECa14] gi|323179168|gb|EFZ64742.1| ribosomal protein S4 [Escherichia coli 1180] gi|323182774|gb|EFZ68175.1| ribosomal protein S4 [Escherichia coli 1357] gi|325498865|gb|EGC96724.1| ribosomal protein S4 [Escherichia fergusonii ECD227] gi|326342544|gb|EGD66318.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str. 1044] gi|326344531|gb|EGD68280.1| SSU ribosomal protein S4p (S9e) [Escherichia coli O157:H7 str. 1125] gi|330909340|gb|EGH37854.1| SSU ribosomal protein S4p (S9e) [Escherichia coli AA86] gi|332085445|gb|EGI90611.1| ribosomal protein S4 [Shigella boydii 5216-82] Length = 202 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 122/210 (58%), Gaps = 16/210 (7%) Query: 5 ESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 K K+ RR G +L+ + K + PG HG RK + S +G+QLR KQK Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLREKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+ Sbjct: 57 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMV 176 H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 116 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P + +L+VE YS+ Sbjct: 176 GTFKRKPER---SDLSADINEHLIVELYSK 202 >gi|322719555|gb|ADX07714.1| small ribosomal protein subunit 4 [Schistidium apocarpum] gi|322719557|gb|ADX07715.1| small ribosomal protein subunit 4 [Schistidium apocarpum] Length = 198 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSLI---NQSTSSKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQAMIIKNMNFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|67036110|gb|AAY62981.1| small ribosomal protein subunit 4 [Chrysohypnum diminutivum] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQATSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103502|gb|ACM44280.1| small ribosomal protein subunit 4 [Thuidium tamariscinum] Length = 203 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G L G +S K S + ++L KQK++ +Y Sbjct: 4 RYRGPRVRIIRRLGT-LPGLTNKISQLKSGSINQ--STSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 61 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 120 VNDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LDRESIGLKINELLVVEYYSR 201 >gi|314924148|gb|EFS87979.1| ribosomal protein S4 [Propionibacterium acnes HL001PA1] Length = 201 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRGR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDHPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|229592879|ref|YP_002874998.1| 30S ribosomal protein S4 [Pseudomonas fluorescens SBW25] gi|312963346|ref|ZP_07777829.1| 30S ribosomal protein S4 [Pseudomonas fluorescens WH6] gi|330812052|ref|YP_004356514.1| 30S ribosomal protein S4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|259495288|sp|C3K2V2|RS4_PSEFS RecName: Full=30S ribosomal protein S4 gi|229364745|emb|CAY52725.1| 30S ribosomal protein S4 [Pseudomonas fluorescens SBW25] gi|311282426|gb|EFQ61024.1| 30S ribosomal protein S4 [Pseudomonas fluorescens WH6] gi|327380160|gb|AEA71510.1| 30S ribosomal protein S4 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 206 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VN+ SY+ + GDV+ V++K+K +++A L A+R E++ V+ + Sbjct: 119 SHKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|63191849|gb|AAY34884.1| small ribosomal protein subunit 4 [Reimersia inconspicua] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 NNCIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKYKIPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|60117193|ref|YP_209527.1| ribosomal protein S4 [Huperzia lucidula] gi|62287201|sp|Q5SD08|RR4_HUPLU RecName: Full=30S ribosomal protein S4, chloroplastic gi|50660001|gb|AAT80723.1| ribosomal protein S4 [Huperzia lucidula] Length = 202 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+GE K+P Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLGELPGLTRKTPKLKPDYI---NKSTPNKKVSQYCIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 ++G ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH+H Sbjct: 58 HHG-LAEQQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R++N+ SYRCK D+I + + + A + + + ++ +P +++++ V Sbjct: 117 ILVNNRAINVPSYRCKPKDIITTRDRPESRARITKNYEFSQTYKIPNHLTLHSLQSVGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 NKIVDR---ESIDLNINELLVVEYYSR 200 >gi|29422371|gb|AAO84581.1| small ribosomal protein 4 [Breutelia chrysea] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSP-VNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P +N S P K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLNLSSINP----STSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K A + + ++ +P +++ N + Sbjct: 116 VNDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENXXLVXQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|323700831|ref|ZP_08112743.1| ribosomal protein S4 [Desulfovibrio sp. ND132] gi|323460763|gb|EGB16628.1| ribosomal protein S4 [Desulfovibrio desulfuricans ND132] Length = 208 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +K K+ RR GE L+ + K R Y PG G+ R K S + +QLR Sbjct: 1 MARYTEAKCKLCRREGEKLFLKGDRCYTDKCAYEKRPYPPGQAGRLRH-KMSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I E +FR+ +K A+ +G HNL+ LE RLD ++YR F + ARQ Sbjct: 60 KQKVRRMYG-ILEGQFRTYYKRAEGMKGVAGHNLLFLLERRLDNVIYRLGFANSRDQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR V+I S + K DVIEV+++++++ + EA + +A R PE++ + Sbjct: 119 LVLHGIFKLNGRRVSIPSMQVKAEDVIEVREEARKIPVINEAQEVIARRGCPEWLESDGA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N T +PS +D+ +P + L+VE YS+ Sbjct: 179 NFKGTVKAMPSR-EDIQFP--INEQLIVELYSK 208 >gi|46486544|gb|AAS98708.1| ribosomal protein subunit 4 [Powellia involutifolia] Length = 200 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G L G +S K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGA-LPGLTNKTFQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRFGVAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K K A + ++ +P +++ + + Sbjct: 117 VNDRIVDIPSYRCKPQDFITIKDGQKSQAITSKNIDFYQKYKIPNHLTYSSLEKKGFVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRESIDLKINELLVVEYYSR 198 >gi|67035799|gb|AAY62830.1| small ribosomal protein subunit 4 [Phyllogonium fulgens] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67036012|gb|AAY62932.1| small ribosomal protein subunit 4 [Palamocladium leskeoides] Length = 199 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNMEFYQKYKIPNHLTYSFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|33594506|ref|NP_882150.1| 30S ribosomal protein S4 [Bordetella pertussis Tohama I] gi|33594777|ref|NP_882420.1| 30S ribosomal protein S4 [Bordetella parapertussis 12822] gi|33599049|ref|NP_886609.1| 30S ribosomal protein S4 [Bordetella bronchiseptica RB50] gi|61236218|sp|P0A4C5|RS4_BORPE RecName: Full=30S ribosomal protein S4 gi|61236221|sp|P0A4C6|RS4_BORBR RecName: Full=30S ribosomal protein S4 gi|61236225|sp|P0A4C7|RS4_BORPA RecName: Full=30S ribosomal protein S4 gi|33564582|emb|CAE43898.1| 30S ribosomal protein S4 [Bordetella pertussis Tohama I] gi|33564853|emb|CAE39797.1| 30S ribosomal protein S4 [Bordetella parapertussis] gi|33575095|emb|CAE30558.1| 30S ribosomal protein S4 [Bordetella bronchiseptica RB50] Length = 207 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++++ PG HG+ ++ S +GLQLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSK---PGQHGRTSGARTSDYGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EA+R RG+T LI LESRLD +VYR F T AR Sbjct: 58 EKQKLKRMYG-VLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+HR + +NG + +I S K GDVI +++K+K+ + E+ L A +P+++ V+ Sbjct: 117 QLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLAASIGLPQWVEVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M TF P + ++VVE YSR Sbjct: 177 SKMTGTFKSAPDRAD---VARDVNESMVVELYSR 207 >gi|93213404|gb|ABF01128.1| ribosomal protein subunit 4 [Hypnum cupressiforme] Length = 199 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L+ Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|26399118|sp|P59149|RR4_NECCR RecName: Full=30S ribosomal protein S4, chloroplastic gi|23504375|emb|CAC80632.1| small ribosomal protein 4 [Neckera crispa] Length = 202 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S ++ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTSQLKSSS---INQSISNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETMISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|294337218|emb|CAQ52758.1| ribosomal protein S4 [Neckera urnigera] Length = 202 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G K+ S + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ E R D +++R TI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMALTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + +L ++ +P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|12642234|gb|AAK00199.1| rps4 [Aphanorrhegma serratum] Length = 190 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 67/196 (34%), Positives = 100/196 (51%), Gaps = 9/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ S Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGVLPGLTNKTLQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITERQLL 55 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I Sbjct: 56 NYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIP 115 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 SYRCKPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI---LDRES 172 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 IGLKINELLVVEYYSR 188 >gi|67035777|gb|AAY62819.1| small ribosomal protein subunit 4 [Macrothamnium macrocarpum] gi|67036068|gb|AAY62960.1| small ribosomal protein subunit 4 [Gollania cylindricarpa] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|46486554|gb|AAS98713.1| ribosomal protein subunit 4 [Sciadocladus kerrii] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + + +++G T L+ LE RLD +++R PTI ARQ +NHRH+LV Sbjct: 58 -ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLINHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKSQTIISKNIHFSQKYKIPNHLTYNSLEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63191659|gb|AAY34791.1| small ribosomal protein subunit 4 [Ctenidium molluscum] gi|63191661|gb|AAY34792.1| small ribosomal protein subunit 4 [Hyocomium armoricum] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|313836059|gb|EFS73773.1| ribosomal protein S4 [Propionibacterium acnes HL037PA2] gi|314929595|gb|EFS93426.1| ribosomal protein S4 [Propionibacterium acnes HL044PA1] gi|314970518|gb|EFT14616.1| ribosomal protein S4 [Propionibacterium acnes HL037PA3] gi|328906196|gb|EGG25971.1| 30S ribosomal protein S4 [Propionibacterium sp. P08] Length = 201 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRGR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RD+P ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLHPIVVARETFETRDIPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + + + + +VE YS+ Sbjct: 178 HQLPTRDQII---IDVNEQAIVELYSK 201 >gi|116010499|emb|CAL37356.1| ribosomal protein S4 [Buddleja davidii] Length = 194 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + +VP +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITAKDEQKSRTLIQNSLNSSPHEEVPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|49182817|gb|AAT57870.1| small ribosomal protein [Tritomaria quinquedentata] Length = 195 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTNKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN + Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGSVNQ---TV 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWVNLKINELLVVEYYSR 193 >gi|328541168|gb|AEB21808.1| ribosomal protein S4 [Telaranea lindenbergii] Length = 197 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGALPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPGDLITIRDKQKSRSIITKNVNLFQNVKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|67035757|gb|AAY62809.1| small ribosomal protein subunit 4 [Orthomitrium tuberculatum] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGVLPGLTNKTPQLKSSSA---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H++V Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHIIV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFNQKYKIPNHLTYNSLEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRKLIGLKINELLVVEYYSR 197 >gi|332040528|gb|EGI76904.1| 30S ribosomal protein S4 [Hylemonella gracilis ATCC 19624] Length = 207 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 84/214 (39%), Positives = 130/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ ++ S FGLQLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSISDKAKFDSK---PGQHGRISGARTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F++A + +G++ NL+S LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYFEQASQRKGNSGANLLSLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG++VNI SY + GDVI V++KSK+ V+EA QLA++ P ++ VN Sbjct: 117 QLVSHKAITVNGQAVNIPSYMVQAGDVIAVREKSKKQNRVVEALQLAQQVGFPAWVEVNV 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D F + P + + + +L+VE YSR Sbjct: 177 DKAEGAFKKAPDRDE---FGSDINESLIVELYSR 207 >gi|49066380|gb|AAT49276.1| ribosomal protein system 4 [Orthotrichum exiguum] Length = 200 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 2 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N I Sbjct: 118 NDRIVDIPSYRCKPQDFITIKSRQKSQDIINKNIDFYQKQKIPNHLTYNSLEKKGLVNEI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LNRELIGLKINELLVVEYYSR 198 >gi|24473818|gb|AAL82752.1| small ribosomal subunit protein 4 [Brachymenium systylium] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNINLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|119718096|ref|YP_925061.1| 30S ribosomal protein S4 [Nocardioides sp. JS614] gi|152112238|sp|A1SNI9|RS4_NOCSJ RecName: Full=30S ribosomal protein S4 gi|119538757|gb|ABL83374.1| SSU ribosomal protein S4P [Nocardioides sp. JS614] Length = 202 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G S R Y PG HG+ R K S + LQLR KQK + Sbjct: 1 MARYTGPMTKKSRRLGVDLVGGD-SAYERRPYPPGQHGRGR-IKESEYLLQLREKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F + + EA R G T NL+ LE RLD +VYRA F T ARQ V H H Sbjct: 59 TYG-VLEKQFHNYYTEASRRAGKTGDNLLQLLECRLDNVVYRAGFARTRRHARQLVTHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 VNG+ V+I S++ DVI+V++KS ++ + A + ER VP ++ M Sbjct: 118 FKVNGKKVDIPSFQVTAHDVIDVREKSLEMTPFIVARETHGERVVPAWLEAIPSRMRVLV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + + +Q L+VE+YS+ Sbjct: 178 HQLPVRAQ---IDIPVQEQLIVEYYSK 201 >gi|328541076|gb|AEB21762.1| ribosomal protein S4 [Drucella integristipula] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR--KSKPSYFGLQLRAKQKMKKY 61 + K+ RR+G K+ H R K S + ++L KQK++ + Sbjct: 1 YRGPRAKVIRRLGALPGLTSKTL-----KPKSTHNDRSASNKKVSQYRIRLEEKQKLRFH 55 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 56 YG-LTERQLLKYVRIARKTKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 114 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY C+ G++I V+ + K + + + + +P +++ + + + Sbjct: 115 LINNNIVDIPSYNCEPGNIITVRDEQKSRSVITKNKDSFQNLKIPNHLTFDSIKLCGSIN 174 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + L+VE+YSR Sbjct: 175 Q---TINREWIDLKINELLIVEYYSR 197 >gi|47606886|gb|AAT36363.1| ribosomal protein subunit 4 [Calomnion brownseyi] Length = 199 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKYQTIISKNIDFYQKYKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|87302988|ref|ZP_01085792.1| 30S ribosomal protein S4 [Synechococcus sp. WH 5701] gi|87282484|gb|EAQ74443.1| 30S ribosomal protein S4 [Synechococcus sp. WH 5701] Length = 202 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ KS R+Y PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKSA--KRAYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD I +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQEGSTGTNLLKLLENRLDNICFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNGR V++ SY+C+ GDVI V+++ + ++P + ++ + A Sbjct: 117 ITVNGRVVDVPSYQCRAGDVIVVRERKASRQLAEGNLEFPGLANIPPNLELDKNKFTAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVEFYSR Sbjct: 177 NG---RIEREWVALEINELLVVEFYSR 200 >gi|37992657|gb|AAR06507.1| small ribosomal protein 4 [Pilotrichella pandurifolia] Length = 200 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 2 YRGPHVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 118 NGCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LDRESIGLKINELLVVEYYSR 198 >gi|222103558|gb|ACM44308.1| small ribosomal protein subunit 4 [Oxystegus tenuirostris] Length = 203 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S K S + ++L KQK++ +Y Sbjct: 4 RYRGPRVRIIRRLGTLPGLSNKTPNLKSSS---TSQSNSNKKISQYRIRLEEKQKLRFHY 60 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 61 G-ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 119 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K + + +++ +P +++ N + Sbjct: 120 VNNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQ 179 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 180 I---LDQELIGLKINELLVVEYYSR 201 >gi|195984190|gb|ACG63785.1| rps4 [Oedipodiella australis var. catalaunica] Length = 196 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+ S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE R D +++R TI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMALTIPEARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 117 IVDIPSYRCKPQDFITIKDRQKSQAIITKNIDFSQKSKVPNHLTFNSLQKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|78185157|ref|YP_377592.1| 30S ribosomal protein S4 [Synechococcus sp. CC9902] gi|116072265|ref|ZP_01469532.1| 30S ribosomal protein S4 [Synechococcus sp. BL107] gi|123581244|sp|Q3AWW5|RS4_SYNS9 RecName: Full=30S ribosomal protein S4 gi|78169451|gb|ABB26548.1| SSU ribosomal protein S4P [Synechococcus sp. CC9902] gi|116064787|gb|EAU70546.1| 30S ribosomal protein S4 [Synechococcus sp. BL107] Length = 202 Score = 250 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LESRLD I +R F PT+ +RQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLESRLDNICFRLGFGPTVPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 V VNGR +I SY+ K GDV+ +++K ++P ++ ++ + A Sbjct: 117 VTVNGRVTDIASYQVKPGDVLAIREKKGSKQLAEGNLAFPGLSNIPPHLELDKAKLSAKC 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 TG---RCEREWVALEINELLVVEYYSR 200 >gi|67035968|gb|AAY62910.1| small ribosomal protein subunit 4 [Porotrichum longirostre] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDQRKSEIIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|77862551|gb|ABB04548.1| small ribosomal protein 4 [Plagiochasma wrightii] Length = 201 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N ++I SY CK D I +K + K + + + ++ +P +++ + ++ Sbjct: 117 LINNNPIDIPSYNCKPKDTITIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLMHVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|67035763|gb|AAY62812.1| small ribosomal protein subunit 4 [Codonoblepharon menziesii] Length = 202 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 4 YRGPRVKIVRRLGILPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 61 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 119 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + + +P +++ N +I Sbjct: 120 NHRIVDIASYRCKPQDFITIKNRQKSQDIIAKNIDFYPKYKIPNHLTYNSLEKKGLVNQI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 ---LDRELIGLKINELLVVEYYSR 200 >gi|6002077|emb|CAA58948.1| ribosomal protein S4 [Sagittaria sagittifolia] Length = 196 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + V + + +P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKTLVQNSIASSSHEGLPKHLTLDSSQYKGFV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + LVVE+ Sbjct: 176 NQIIDSK---WVGLKRNELLVVEY 196 >gi|328541166|gb|AEB21807.1| ribosomal protein S4 [Telaranea tetradactyla] Length = 197 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGALPGLTSKTLKPKSSYN---DRSASNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPGDLITIRDKQKSRSIITKNVNLFQNVKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|93213408|gb|ABF01130.1| ribosomal protein subunit 4 [Stereophyllum radiculosum] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKFEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|30248442|ref|NP_840512.1| 30S ribosomal protein S4 [Nitrosomonas europaea ATCC 19718] gi|41017978|sp|Q82X70|RS4A_NITEU RecName: Full=30S ribosomal protein S4 A gi|30138328|emb|CAD84336.1| Ribosomal protein S4:S4 domain [Nitrosomonas europaea ATCC 19718] Length = 208 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 120/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K + RR GE L+ + K P+ R+Y PG HGQ +K + S + +QLR Sbjct: 1 MARNINPKCRQCRREGEKLFLKGDKCFSDKCPIERRNYPPGQHGQ-KKVRLSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR+++K AD+ +G T NL+ LESRLD + Y F + ARQ Sbjct: 60 KQKIRRIYG-LLENQFRNVYKRADKQKGVTGDNLLQLLESRLDNVAYNMGFGSSRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H VL+NG+ NI S+ + GD+IE+ + +K + + + A+ R +P ++ V+ D Sbjct: 119 IVRHNCVLLNGKRANIPSHLVEPGDLIEIAEHAKSYLRIKASIEAAKRRSIPSWLEVDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + P + +LVVE YS+ Sbjct: 179 NLKGLYKSKPER---SDLSSTINESLVVELYSK 208 >gi|67035767|gb|AAY62814.1| small ribosomal protein subunit 4 [Leptotheca boliviana] Length = 197 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+P + L K S + ++L KQK++ +YG I Sbjct: 1 GPRVKIIRRLGVLPGLTNKTPQLKSNSINQLTAN---KKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N Sbjct: 57 TEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILIND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 RIVDIPSYRCKPQDFITIKDQRKSQAIINKNLDFYQKYKIPNHLTYNSLEKKGVVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + L+VE+YSR Sbjct: 175 -LNRESIDLKINELLIVEYYSR 195 >gi|89147826|gb|ABD62761.1| ribosomal protein 4 [Gyrothyra underwoodiana] Length = 197 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K + SY K S + ++L KQK++ +YG ++E+ Sbjct: 4 VKIIRRLGALPGLTSKILKSKSSYI---DRSSSNKKVSQYRIRLEEKQKLRFHYG-LTER 59 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V Sbjct: 60 QLLKYVYIARKTKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNNIV 119 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY C+ GD+I VK K K + + + L ++ +P +++ + + + ++ + Sbjct: 120 DIPSYNCEPGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDPVELQGSVNQMINR-- 177 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 178 -EWVNLKINELLVVEYYSR 195 >gi|67036108|gb|AAY62980.1| small ribosomal protein subunit 4 [Dolichomitra cymbifolia] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCVVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|110639510|ref|YP_679719.1| 30S ribosomal protein S4 [Cytophaga hutchinsonii ATCC 33406] gi|123058544|sp|Q11QD7|RS4_CYTH3 RecName: Full=30S ribosomal protein S4 gi|110282191|gb|ABG60377.1| SSU ribosomal protein S4P [Cytophaga hutchinsonii ATCC 33406] Length = 201 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR GE + G K + ++Y PG+HG+ +K K S + +QL+ KQK K Sbjct: 1 MARYTGPRSRISRRFGEPVMGDSK-ALQKKNYAPGMHGRNKKRKQSEYSIQLKEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F F A R +G T NL+ LE+RLD VYR + AARQ V H+H Sbjct: 60 TYG-VLERQFAKTFDTAARKQGITGENLLKMLEARLDNTVYRLGIASSRRAARQLVIHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VNG VNI SY+ K GD + V++KSK + ++ ++ ++ + +M+ FV Sbjct: 119 IVVNGDVVNIPSYQLKPGDQLGVREKSKSIEAITDSLSTQSAKKFTWLEWDQSSMLGKFV 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P + P +Q L+VE YS+ Sbjct: 179 TYPQREE---IPENIQEQLIVELYSK 201 >gi|37992707|gb|AAR06532.1| small ribosomal protein 4 [Trachyxiphium drepanophyllum] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G L G + +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGV-LPGLTNKILELKSSSITQ--STSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH++V Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIVV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A V + + ++ +P +++ N +I Sbjct: 117 NDYIVNIPSYRCKPQDFITIKNQQKSEAIVNKNIEFYQKTKIPNHLTYNFLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035921|gb|AAY62887.1| small ribosomal protein subunit 4 [Cratoneuron filicinum] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGPTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K K K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNKLKSETIISKNMEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|47606904|gb|AAT36372.1| ribosomal protein subunit 4 [Hymenodon pilifer] gi|67035765|gb|AAY62813.1| small ribosomal protein subunit 4 [Hymenodon pilifer] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P + L K S + ++L KQK++ YYG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTPQLKSNSINQLTSN---KKISQYRIRLEEKQKLRFYYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K V + ++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNRRKSQTIVNKNIDFYQKYKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESISLKINELLVVEYYSR 197 >gi|67035771|gb|AAY62816.1| small ribosomal protein subunit 4 [Andoa berthelotiana] Length = 199 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|47606912|gb|AAT36376.1| ribosomal protein subunit 4 [Lopidium concinnum] Length = 200 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 7/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G KS + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKSAPQLKPSSINQ--STSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG V+I SYRCK D I +K K K + + + + ++ + +++ + +I Sbjct: 118 NGYIVDIPSYRCKPQDFITIKNKQKSESIISKNIEFYQKSKIANHLTYSSLEKKGLVNQI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LDRESIGLKINELLVVEYYSR 198 >gi|63101011|gb|AAY33130.1| small ribosomal protein 4 [Climacium americanum] Length = 200 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 117 VNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRESIGLKINELLVVEYYSR 198 >gi|67035568|gb|AAY62715.1| small ribosomal protein subunit 4 [Cnestrum alpestre] Length = 198 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S ++ K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSS---INQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A +++ +++ VP +++ N +I Sbjct: 117 DRIVNIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKQGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQELIGLKINELLVVEYYSR 196 >gi|328541172|gb|AEB21810.1| ribosomal protein S4 [Telaranea martinii] Length = 200 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDLITIRDKQKSRSIITRNVNLFQNLKIPSHLAFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWIDLKINELLVVEYYSR 197 >gi|152998247|ref|YP_001343082.1| 30S ribosomal protein S4 [Marinomonas sp. MWYL1] gi|189045385|sp|A6W368|RS4_MARMS RecName: Full=30S ribosomal protein S4 gi|150839171|gb|ABR73147.1| ribosomal protein S4 [Marinomonas sp. MWYL1] Length = 206 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 84/214 (39%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K V T PG+HG R+ + S +GLQLR Sbjct: 1 MARYIGPTCKLSRREGTDLQLKSGSRALESKCKVET---VPGVHG-ARRGRLSEYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG I EK+FR+ +K A R +G T NL+ LESRLD +VYRA F T AR Sbjct: 57 EKQKVRRMYG-ILEKQFRNYYKSAARLKGATGENLLQLLESRLDNVVYRAGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNH 172 Q V H+ +LVNG +VNI SY+ K GDV+ +++K+K+ V A +L++ P +I V+ Sbjct: 116 QLVGHKGILVNGATVNIPSYQVKAGDVVSIREKAKKQLRVQSALELSKGRAPIHWIEVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + AT+ +P + NL+VE YS+ Sbjct: 176 TKLEATYKALPERAD---LSAEINENLIVELYSK 206 >gi|63078617|gb|AAY29395.1| ribosomal protein S4 [Tortella flavovirens] gi|63078619|gb|AAY29396.1| ribosomal protein S4 [Tortella flavovirens] gi|63078621|gb|AAY29397.1| ribosomal protein S4 [Tortella flavovirens var. glareicola] Length = 197 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S L+ K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSSINQLNSN---KKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|29422399|gb|AAO84595.1| small ribosomal protein 4 [Leiomela aristifolia] Length = 198 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 XRIVDIPSYRCKPXDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSXENKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|6002043|emb|CAA58931.1| ribosomal protein S4 [Dioscorea balcanica] Length = 196 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDFKNQSRFGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTEQQLLRYVHIAGKAKGSTDQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKALIQNSIESSPHEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---FIGLKINELLVVEY 196 >gi|67036100|gb|AAY62976.1| small ribosomal protein subunit 4 [Rauiella lagoensis] Length = 199 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGDILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDYITIKNQQKSETIINKNIEFYQKYKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|309778473|ref|ZP_07673375.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 3_1_53] gi|308913769|gb|EFP59607.1| ribosomal protein S4 [Erysipelotrichaceae bacterium 3_1_53] Length = 200 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G ++ + + R+Y PG HG ++ K + +G QLR KQK++ Sbjct: 1 MSRINGPVWKTSRRLGFSILETGEE-LQKRAYAPGQHGPTKRVKLTNYGQQLREKQKIRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + F +A + +G T N + LESRLD ++YR F T AARQ VNH H Sbjct: 60 MYG-LNERQFYNTFMKASKMKGVTGDNFLGLLESRLDNLIYRMGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G V+EVK+KSK + ++ EA + A + ++ V+ D T++ Sbjct: 119 ILVNGKKVDIPSFIAKPGMVVEVKEKSKSMKAINEAQE-ATLNTVAFVDVDKDAKKGTYL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + LVVEFY+R Sbjct: 178 RLPERSE---LNAEFNELLVVEFYNR 200 >gi|115376109|ref|ZP_01463354.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|310821021|ref|YP_003953379.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|115366924|gb|EAU65914.1| ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] gi|309394093|gb|ADO71552.1| 30S ribosomal protein S4 [Stigmatella aurantiaca DW4/3-1] Length = 208 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +S +I RR ++ + K + R Y PG HGQ R K S +G+QLR Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTDKCAIERRPYPPGQHGQGR-VKFSGYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR + A ++G T NL+ LE RLD +V+R F T ARQ Sbjct: 60 KQKVKRMYG-LLESQFRGYYHRASAAKGKTGENLLQQLELRLDNVVFRMGFADTRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H VNG+ VNI S+ K G +EV +KS+++ + EA + R VP++I ++ Sbjct: 119 LVRHGHFSVNGKKVNIPSFAVKPGSSVEVVEKSRKVLRISEALETVDRRGVPQWIDLDKK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T +P+ +D+ P +Q L+VE YS+ Sbjct: 179 SFKGTVKTVPNR-EDLTMP--IQEQLIVELYSK 208 >gi|66990658|emb|CAI29107.1| small ribosomal protein 4 [Plagiochila heterostipa] Length = 197 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE R D ++R TI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMYIARKTKGSTGQVLLQLLEMRPDNTIFRLGMSSTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K A V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKQKSRAIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 ++ + + + LVVE+ Sbjct: 177 NQMINR---EWINLKINEVLVVEY 197 >gi|37548859|gb|AAO32698.1| ribosomal protein 4 [Pogonatum japonicum] Length = 195 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 2 CKIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 58 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 118 NIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 RESIGLKINELLVVEYYSR 193 >gi|77461277|ref|YP_350784.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf0-1] gi|90101709|sp|Q3K611|RS4_PSEPF RecName: Full=30S ribosomal protein S4 gi|77385280|gb|ABA76793.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf0-1] Length = 206 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 72/211 (34%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +K A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKAAASKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VN+ SY+ + GDV+ V++K+K +++A +L A+R E++ V+ + Sbjct: 119 SHKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALELCAQRGRVEWVEVDAEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|156598018|gb|ABU85275.1| ribosomal protein S4 [Cycas micronesica] Length = 201 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P +R+ Q K S + ++ KQK++ Sbjct: 1 MSRYRGPRLKIIRRLRTLPGLTNKRP-KSRNDP---TNQSSSRKISQYRIRPEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGRAKGSTGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN R V+I SYRCK DVI ++ + + A + + L+++D +P +++++ Sbjct: 116 ILVNDRVVDIPSYRCKPRDVITIRDQRRSRAMIGKNLDLSQKDQMPNHLTLHSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|33413261|emb|CAD86765.1| ribosomal protein small subunit 4 [Orthomniopsis dilatata] Length = 199 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGPTNKTPHLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 NDRLVDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRNSIDLKINELLVVEYYSR 197 >gi|77918341|ref|YP_356156.1| 30S ribosomal protein S4 [Pelobacter carbinolicus DSM 2380] gi|90101701|sp|Q3A6M1|RS4_PELCD RecName: Full=30S ribosomal protein S4 gi|77544424|gb|ABA87986.1| SSU ribosomal protein S4P [Pelobacter carbinolicus DSM 2380] Length = 209 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR L+ + K + R+Y PG HGQ R +K S +G QLR Sbjct: 1 MARYTGPVCRLCRRETMKLFLKGDRCYTDKCALERRNYAPGQHGQGR-TKVSDYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ+MK+ YG + EK+FR+ F +AD +G T NL+ LE RLD+ VYR F + R Sbjct: 60 KQRMKRTYG-LLEKQFRAYFDKADSMKGVTGENLLVLLERRLDSAVYRLGFASSRTEGRA 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H LVNGR VNI SY + DVIE+++KS+++ + +A + R +P ++ ++ + Sbjct: 119 LVRQGHFLVNGRKVNIPSYVMRPNDVIELREKSRKITRINDALDGVMRRGLPSWVELDRE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P +++ P Q L+VE YS+ Sbjct: 179 AFKGTFKTLPVR-EEMTTPA-FQEQLIVELYSK 209 >gi|193211877|ref|YP_001997830.1| 30S ribosomal protein S4 [Chlorobaculum parvum NCIB 8327] gi|226697821|sp|B3QR97|RS4_CHLP8 RecName: Full=30S ribosomal protein S4 gi|193085354|gb|ACF10630.1| ribosomal protein S4 [Chlorobaculum parvum NCIB 8327] Length = 203 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 120/207 (57%), Gaps = 5/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ S K+ RR+G L + + + R Y PG HGQ R+ K S + LQLR KQKMK Sbjct: 1 MARFRGSITKVSRRLGIALSPKAEKYLERRPYAPGEHGQSRRGKVSEYALQLREKQKMKY 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR +K+A RG T NL+ LE R D +VYR F P+ ARQ V H H Sbjct: 61 LYG-VLEKQFRIYYKKAVAQRGVTGDNLVKMLERRFDNVVYRCGFSPSRAGARQLVTHGH 119 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI S+ GD IE +QKS+ L +V ++ AE +PE+I V+ N A F Sbjct: 120 MLVNGKKVNIPSFLVSPGDQIEFRQKSRNLDAVADSLNKAAESRIPEWIQVDKANRKAVF 179 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + IP + V P LVVE YS+ Sbjct: 180 LAIPER-EAVQEPF--NEQLVVELYSK 203 >gi|121761861|gb|ABM65016.1| ribosomal protein S4 [Plagiomnium cf. tezukae Wyatt 1799] Length = 198 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE+RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLETRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R V+I SYRCK D I +K + K + + ++ +P++++ N N +I Sbjct: 117 DRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKSKIPDHLTYNSLNKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRDSIDLKINELLVVEYYSR 196 >gi|49182748|gb|AAT57836.1| small ribosomal protein [Lethocolea glossophylla] Length = 195 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ +Y H K K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKAKSTYI--DHSTSNK-KVSQYRIRLEEKQKLRFHYG-VTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ E RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GDVI VK K K + +++ L ++ VP +++ + + + + Sbjct: 117 VDIPSYNCEPGDVITVKDKQKSQSIIIKNIDLFQKSKVPSHLTFDPTELRGLVNQTINRD 176 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 ---LINLKINELLVVEYYSR 193 >gi|42556452|gb|AAS19821.1| small ribosomal protein 4 [Lophozia ventricosa] Length = 191 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I +K K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIKNKQKSQSIITKNLNLFQKMKIPSHLTFDSTKLQGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|328541110|gb|AEB21779.1| ribosomal protein S4 [Bazzania trilobata] Length = 196 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K+ RR+G K+ + K S + ++L KQK++ +YG ++ Sbjct: 1 PRVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG-LT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 ERQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAINNN 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + + Sbjct: 117 IVDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ---T 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 174 INREWINLKINELLVVEYYSR 194 >gi|296313389|ref|ZP_06863330.1| ribosomal protein S4 [Neisseria polysaccharea ATCC 43768] gi|296840099|gb|EFH24037.1| ribosomal protein S4 [Neisseria polysaccharea ATCC 43768] Length = 206 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++ PG HG +K + S +GLQLR Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDS---APGQHG-AKKPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T AR Sbjct: 57 EKQKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ Sbjct: 116 QLVSHKAIAVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + F +P + + LVVEFYS+ Sbjct: 176 DKLEGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|28867878|ref|NP_790497.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato str. DC3000] gi|66047752|ref|YP_237593.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae B728a] gi|71734874|ref|YP_276682.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|213969238|ref|ZP_03397376.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato T1] gi|289623825|ref|ZP_06456779.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648918|ref|ZP_06480261.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str. 2250] gi|289675512|ref|ZP_06496402.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae FF5] gi|298489072|ref|ZP_07007094.1| SSU ribosomal protein S4p (S9e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381745|ref|ZP_07230163.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato Max13] gi|302061055|ref|ZP_07252596.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato K40] gi|302130804|ref|ZP_07256794.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302189301|ref|ZP_07265974.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. syringae 642] gi|37999395|sp|Q889U7|RS4_PSESM RecName: Full=30S ribosomal protein S4 gi|81307873|sp|Q4ZMR7|RS4_PSEU2 RecName: Full=30S ribosomal protein S4 gi|90101706|sp|Q48D60|RS4_PSE14 RecName: Full=30S ribosomal protein S4 gi|28851114|gb|AAO54192.1| ribosomal protein S4 [Pseudomonas syringae pv. tomato str. DC3000] gi|63258459|gb|AAY39555.1| Ribosomal protein S4, bacterial and organelle form [Pseudomonas syringae pv. syringae B728a] gi|71555427|gb|AAZ34638.1| ribosomal protein S4 [Pseudomonas syringae pv. phaseolicola 1448A] gi|213925916|gb|EEB59473.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. tomato T1] gi|298156384|gb|EFH97482.1| SSU ribosomal protein S4p (S9e) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322298|gb|EFW78392.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str. B076] gi|320331956|gb|EFW87892.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str. race 4] gi|330869407|gb|EGH04116.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330879399|gb|EGH13548.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. glycinea str. race 4] gi|330879418|gb|EGH13567.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330891908|gb|EGH24569.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. mori str. 301020] gi|330899712|gb|EGH31131.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330940914|gb|EGH43865.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. pisi str. 1704B] gi|330953173|gb|EGH53433.1| 30S ribosomal protein S4 [Pseudomonas syringae Cit 7] gi|330962501|gb|EGH62761.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966887|gb|EGH67147.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. actinidiae str. M302091] gi|330969797|gb|EGH69863.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330988258|gb|EGH86361.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331018184|gb|EGH98240.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 206 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +KEA +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKEAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ V VNG++VN+ SY+ + GDV+ +++K+K +++A L A+R E++ V+ + Sbjct: 119 SHKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|3098158|gb|AAC15527.1| small ribosomal protein 4 [Wardia hygrometrica] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMTSTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R +NI SYRCK D I +K + K +++ +++ VP +++ N +I Sbjct: 117 NNRIINIPSYRCKPRDFITIKDRQKSQVMIIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|325203287|gb|ADY98740.1| ribosomal protein S4 [Neisseria meningitidis M01-240355] Length = 206 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++ PG HG +K++ S +GLQLR Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDS---APGQHG-AKKTRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T AR Sbjct: 57 EKQKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ Sbjct: 116 QLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + F +P + + LVVEFYS+ Sbjct: 176 DKLEGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|3098184|gb|AAC15540.1| small ribosomal protein 4 [Pohlia cruda] Length = 198 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R V+I SYRCK D I +K + K + + + +P +++ N N +I Sbjct: 117 DRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYRKYKIPNHLTYNSLNKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIDLKINELLVVEYYSR 196 >gi|77862561|gb|ABB04553.1| small ribosomal protein 4 [Targionia hypophylla] Length = 201 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLINKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N V+I SY CK D+I +K + K + + + ++ +P ++ ++ + Sbjct: 117 LLNNNIVDIPSYNCKPKDIITIKDRQKSQSIITKNLNSFQKQKIPNHLILDLMQIKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 177 Q---TIDREWIYLKINELLVVEYYSR 199 >gi|63101041|gb|AAY33145.1| small ribosomal protein 4 [Cyptodontopsis obtusifolia] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035584|gb|AAY62723.1| small ribosomal protein subunit 4 [Kiaeria glacialis] Length = 194 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPHLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVNGR V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNGRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|146261561|gb|ABQ15090.1| ribosomal protein S4 [Exbucklandia populnea] Length = 195 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I + + K A + + ++P++++++ +I S Sbjct: 116 IVDIPSYRCKPRDIITARDEQKSRALIQNYIDSSPHEELPKHLTLHPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|46811000|gb|AAT01818.1| small ribosomal protein 4 [Diplophyllum obtusifolium] Length = 197 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI R+G K+ + SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIYVRLGALPGLTSKTFKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ VN Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHISVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY C+ GD+I V K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 ATVDIPSYNCEPGDIITVVSKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSVNQMVN 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 R---EWVNLKINELLVVEYYSR 195 >gi|29422377|gb|AAO84584.1| small ribosomal protein 4 [Plagiomnium cuspidatum] Length = 197 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D+I +K + K + + ++ +P +++ N N +I Sbjct: 117 RLVDIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRDSIDLKINELLVVEYYSR 195 >gi|67035789|gb|AAY62825.1| small ribosomal protein subunit 4 [Pseudocryphaea domingensis] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDYIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035785|gb|AAY62823.1| small ribosomal protein subunit 4 [Leucodon sciuroides] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIXRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035744|gb|AAY62803.1| small ribosomal protein subunit 4 [Chrysoblastella chilensis] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKIPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHLLV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K K A + + + +++ VP ++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITIKNCQKSQAIISKNIEFSQQYKVPNHLIFNSLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|258648133|ref|ZP_05735602.1| ribosomal protein S4 [Prevotella tannerae ATCC 51259] gi|260852014|gb|EEX71883.1| ribosomal protein S4 [Prevotella tannerae ATCC 51259] Length = 202 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K +I RR GE ++G K ++ R++ PG HG R+ K S +G+ L KQK K Sbjct: 1 MARYIGPKSRIARRFGEAIFGADKV-LSRRNFPPGQHGNGRRRKTSEYGVMLAEKQKAKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR++F++A S G T L+ LE RLD +VYR PT AARQ VNHRH Sbjct: 60 TYG-VLEKQFRNMFEKASASNGITGEILLQNLECRLDNVVYRLGIAPTRAAARQLVNHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ I SY K G ++ V++KSK L + ++ ++ + + Sbjct: 119 ITVDGKVTGIASYSVKPGQIVAVREKSKSLEVIADSLAGFNHSKYPWMEWDESAKAGKLL 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P P ++ L+VE YS+ Sbjct: 179 HKPERAD---IPENIKEQLIVELYSK 201 >gi|63191675|gb|AAY34799.1| small ribosomal protein subunit 4 [Orthostichella pentasticha] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPHVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NGCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63101105|gb|AAY33177.1| small ribosomal protein 4 [Hygrohypnum smithii] Length = 201 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 10/206 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKY 61 + + +I RR+G K+P G Q K S + ++L KQK++ + Sbjct: 2 RYRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+ Sbjct: 58 YG-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN V+I SYRCK D I +K + K + + + ++ +P +++ + Sbjct: 117 LVNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 QI---LDRESIGLKINELLVVEYYSR 199 >gi|328541070|gb|AEB21759.1| ribosomal protein S4 [Zoopsis macrophylla] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTSKTLKLKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ E RLD + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLPEMRLDNTILRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNDIVDIPSYNCEPGDIIMIRDKPKSQSMITKNINLFQNLKIPSHLAFDPIKLCGSVNQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TIDRESVNLKINELLVVEYYSR 197 >gi|317050554|ref|YP_004111670.1| 30S ribosomal protein S4 [Desulfurispirillum indicum S5] gi|316945638|gb|ADU65114.1| ribosomal protein S4 [Desulfurispirillum indicum S5] Length = 208 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR + L+ + K R+Y PG HGQRR KPS + +QLR Sbjct: 1 MARYTGPVCRMCRRENQKLYLKGLRCETSKCAFERRAYAPGSHGQRR-GKPSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR F +A R +G T NL++ LE R D +VYR + +RQ Sbjct: 60 KQKVRRTYG-LLETQFRRTFDKAVRMKGVTGSNLLTLLELRFDNVVYRLGLGVSRSQSRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 + H H L+NG+ NI S + + GDVI +++KS L V + + R VP+++ + + Sbjct: 119 LITHGHFLLNGKKANIPSIQLRAGDVISLREKSANLDVVRGSVEAGPSRTVPQWLEFDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++P +DV PV NL+VE YSR Sbjct: 179 KLTGKVKQLPVR-EDVTEPVT--ENLIVELYSR 208 >gi|24473810|gb|AAL82748.1| small ribosomal subunit protein 4 [Acidodontium subrotundum] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDFITIKDQQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|3098174|gb|AAC15535.1| small ribosomal protein 4 [Leptostomum macrocarpum] Length = 199 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTFNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLXEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDRQKFQAIISKNIDFYQKYKTPNHLTYNXLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035837|gb|AAY62845.1| small ribosomal protein subunit 4 [Clastobryophilum bogoricum] Length = 202 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+P S + K S + ++L KQK++ YY Sbjct: 3 RYRGPRVKIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFYY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLDMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K A + + + E+ +P +++ N + Sbjct: 119 VNDCMVDIPSYRCKPQDFITIKNQRKSKAIISKNIEFYEKYKIPNHLTYNSLEKKGLINQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 179 I---LDRESIGLKINELLVVEYYSR 200 >gi|46811044|gb|AAT01840.1| small ribosomal protein 4 [Porella navicularis] Length = 197 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRLKIIRRLGALPGFTAKTLKPKSSYI---DRSTSNKKISQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A ++G T L+ LE RLD ++ TI ARQ VNH+H+ +N Sbjct: 57 TERQLLKYVRTARNAKGSTGQILLQLLEMRLDNTIFCLGMASTIPGARQLVNHKHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY C+ GD+I ++ + K + + L ++ ++P +++ + + + ++ + Sbjct: 117 DTVDIPSYNCEPGDIITIRNREKSQSIITRNINLFQKLEIPNHLTFDSTQLRGSVNQMIN 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 R---EWINLKVNELLVVEYYSR 195 >gi|63191879|gb|AAY34899.1| small ribosomal protein subunit 4 [Gymnostomiella vernicosa] Length = 198 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S+ + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLSNKTPHLKSSF---TNQSSSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R +NI SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NRIINIPSYRCKPQDFITIKDRQKSQVLITKNIGFFQKSKIPNHLTFNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|222103540|gb|ACM44299.1| small ribosomal protein subunit 4 [Climacium japonicum] Length = 204 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 6 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 62 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 63 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 121 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + +++ +P +++ + +I Sbjct: 122 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFSQKSKIPNHLTYSSLEKKGLVNQI 181 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 182 ---LDRESIGLKINELLVVEYYSR 202 >gi|42556506|gb|AAS19848.1| small ribosomal protein 4 [Temnoma pilosum] gi|118626067|emb|CAL41753.1| small ribosomal protein 4 [Pseudolepicolea quadrilaciniata] Length = 191 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNYIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY CK GDVI V+ K K + + + L ++ +P +++++ + + + ++ Sbjct: 117 SYNCKPGDVITVRNKQKSQSIITKNINLFQKLKIPNHLTLDSTQLRGSINQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLQINELLVVEYYSR 189 >gi|85001767|gb|ABC68421.1| small ribosomal protein 4 [Pyramidula tetragona] Length = 196 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGVLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A R++G T L+ LE RLD +V+R PTI ARQ VNHRHVLVN Sbjct: 57 ERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHVLVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + +++ VP +++ + +I Sbjct: 117 IVDIPSYRCKPQDSITIKNRQKSQAIITKNIDFSQKYKVPNHLTFDSVQKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|63100989|gb|AAY33119.1| small ribosomal protein 4 [Dendropogonella rufescens] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NNGIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|15676094|ref|NP_273225.1| 30S ribosomal protein S4 [Neisseria meningitidis MC58] gi|59802136|ref|YP_208848.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA 1090] gi|121634041|ref|YP_974286.1| 30S ribosomal protein S4 [Neisseria meningitidis FAM18] gi|161870895|ref|YP_001600070.1| 30S ribosomal protein S4 [Neisseria meningitidis 053442] gi|218767143|ref|YP_002341655.1| 30S ribosomal protein S4 [Neisseria meningitidis Z2491] gi|239997950|ref|ZP_04717874.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02] gi|240015072|ref|ZP_04721985.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI18] gi|240017521|ref|ZP_04724061.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA6140] gi|240081664|ref|ZP_04726207.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19] gi|240113942|ref|ZP_04728432.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11] gi|240116676|ref|ZP_04730738.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18] gi|240118898|ref|ZP_04732960.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1] gi|240122144|ref|ZP_04735106.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID24-1] gi|240124436|ref|ZP_04737392.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332] gi|240124695|ref|ZP_04737581.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679] gi|240129112|ref|ZP_04741773.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035] gi|254494697|ref|ZP_05107868.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 1291] gi|254805789|ref|YP_003084010.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha14] gi|260439565|ref|ZP_05793381.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2] gi|268593800|ref|ZP_06127967.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02] gi|268597761|ref|ZP_06131928.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19] gi|268600006|ref|ZP_06134173.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11] gi|268602343|ref|ZP_06136510.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18] gi|268604607|ref|ZP_06138774.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1] gi|268683064|ref|ZP_06149926.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332] gi|268683269|ref|ZP_06150131.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679] gi|268687494|ref|ZP_06154356.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035] gi|291042801|ref|ZP_06568542.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2] gi|293398178|ref|ZP_06642383.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae F62] gi|304388967|ref|ZP_07371014.1| 30S ribosomal protein S4 [Neisseria meningitidis ATCC 13091] gi|54039509|sp|P66561|RS4_NEIMB RecName: Full=30S ribosomal protein S4 gi|54041962|sp|P66560|RS4_NEIMA RecName: Full=30S ribosomal protein S4 gi|75507306|sp|Q5F5V1|RS4_NEIG1 RecName: Full=30S ribosomal protein S4 gi|152112237|sp|A1KRJ8|RS4_NEIMF RecName: Full=30S ribosomal protein S4 gi|189045388|sp|A9M3U1|RS4_NEIM0 RecName: Full=30S ribosomal protein S4 gi|7225385|gb|AAF40624.1| 30S ribosomal protein S4 [Neisseria meningitidis MC58] gi|59719031|gb|AAW90436.1| putative 30S ribosomal protein S4 [Neisseria gonorrhoeae FA 1090] gi|120865747|emb|CAM09476.1| 30S ribosomal protein S4 [Neisseria meningitidis FAM18] gi|121051151|emb|CAM07422.1| 30S ribosomal protein S4 [Neisseria meningitidis Z2491] gi|161596448|gb|ABX74108.1| 30S ribosomal protein S4 [Neisseria meningitidis 053442] gi|226513737|gb|EEH63082.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 1291] gi|254669331|emb|CBA08372.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha14] gi|254670762|emb|CBA07036.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha153] gi|254672692|emb|CBA06587.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha275] gi|261391703|emb|CAX49152.1| 30S ribosomal protein S4 [Neisseria meningitidis 8013] gi|268547189|gb|EEZ42607.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae 35/02] gi|268551549|gb|EEZ46568.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae FA19] gi|268584137|gb|EEZ48813.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae MS11] gi|268586474|gb|EEZ51150.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID18] gi|268588738|gb|EEZ53414.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID1] gi|268623348|gb|EEZ55748.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae PID332] gi|268623553|gb|EEZ55953.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-92-679] gi|268627778|gb|EEZ60178.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae SK-93-1035] gi|291013235|gb|EFE05201.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae DGI2] gi|291611441|gb|EFF40511.1| 30S ribosomal protein S4 [Neisseria gonorrhoeae F62] gi|304337101|gb|EFM03288.1| 30S ribosomal protein S4 [Neisseria meningitidis ATCC 13091] gi|308388383|gb|ADO30703.1| 30S ribosomal protein S4 [Neisseria meningitidis alpha710] gi|319411349|emb|CBY91760.1| 30S ribosomal protein S4 [Neisseria meningitidis WUE 2594] gi|325129086|gb|EGC51935.1| ribosomal protein S4 [Neisseria meningitidis N1568] gi|325131057|gb|EGC53781.1| ribosomal protein S4 [Neisseria meningitidis OX99.30304] gi|325133079|gb|EGC55751.1| ribosomal protein S4 [Neisseria meningitidis M6190] gi|325135173|gb|EGC57799.1| ribosomal protein S4 [Neisseria meningitidis M13399] gi|325137225|gb|EGC59820.1| ribosomal protein S4 [Neisseria meningitidis M0579] gi|325139057|gb|EGC61603.1| ribosomal protein S4 [Neisseria meningitidis ES14902] gi|325141180|gb|EGC63680.1| ribosomal protein S4 [Neisseria meningitidis CU385] gi|325143257|gb|EGC65596.1| ribosomal protein S4 [Neisseria meningitidis 961-5945] gi|325145364|gb|EGC67641.1| ribosomal protein S4 [Neisseria meningitidis M01-240013] gi|325197454|gb|ADY92910.1| ribosomal protein S4 [Neisseria meningitidis G2136] gi|325199380|gb|ADY94835.1| ribosomal protein S4 [Neisseria meningitidis H44/76] gi|325202998|gb|ADY98452.1| ribosomal protein S4 [Neisseria meningitidis M01-240149] gi|325205260|gb|ADZ00713.1| ribosomal protein S4 [Neisseria meningitidis M04-240196] gi|325207204|gb|ADZ02656.1| ribosomal protein S4 [Neisseria meningitidis NZ-05/33] Length = 206 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++ PG HG +K + S +GLQLR Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDS---APGQHG-AKKPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T AR Sbjct: 57 EKQKIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ ++VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P ++SV+ Sbjct: 116 QLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALGLATQIGLPGWVSVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + F +P + + LVVEFYS+ Sbjct: 176 DKLEGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|171462904|ref|YP_001797017.1| ribosomal protein S4 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226699102|sp|B1XSS6|RS4_POLNS RecName: Full=30S ribosomal protein S4 gi|171192442|gb|ACB43403.1| ribosomal protein S4 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 207 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K ++ + PG G+ S+ S +G QLR Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRALSDKCRLDNK---PGQDGRTSGSRTSDYGNQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA+R +G+T L+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRIYG-VLERQFRRYFAEAERRKGNTGETLLQLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+H +L+NG VNI S + K GDV+ +++K+K+ A + E+ L + ++SV+ Sbjct: 117 QLVSHCAILLNGNPVNIPSIQVKPGDVVAIREKAKKQARITESLNLVGQMAAVTWVSVDV 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF ++P + +L+VE YSR Sbjct: 177 AKLEGTFKQVPDR---EDISGEINESLIVELYSR 207 >gi|49182718|gb|AAT57821.1| small ribosomal protein [Harpanthus scutatus] Length = 195 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ SY + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGALPGLTSKTLKPKSSY---VDRSTSNKKISQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + + L ++ +P +++ N + + + ++ Sbjct: 117 VDIPSYNCEPGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFNSIELRGSVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|47606910|gb|AAT36375.1| ribosomal protein subunit 4 [Leucodon julaceus] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCIVNIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|328541058|gb|AEB21753.1| ribosomal protein S4 [Kurzia brevicalycina] Length = 200 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKTLKQKSGYN---DRSTPNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE RLD ++R TI ARQ VNHRH+L+ Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHILI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD I +++K K + V + L + +P ++ + + + + Sbjct: 117 NNDIVDIPSYNCEPGDTITIREKQKSQSVVTKNINLFQNLKIPSHLIFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREFIDLKINELLVVEYYSR 197 >gi|241068491|ref|XP_002408449.1| 30S ribosomal protein S4, putative [Ixodes scapularis] gi|215492437|gb|EEC02078.1| 30S ribosomal protein S4, putative [Ixodes scapularis] Length = 205 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 96/200 (48%), Positives = 135/200 (67%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 7 SKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 66 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 67 EKQFRNIFVLAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 126 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R KEGDVIEVK+ KQ++ + E+ + P Y+S + ++ ++R+P+ L Sbjct: 127 KADIASIRLKEGDVIEVKESVKQISLIQESVSKQGQTTPGYLSFDVPSLTGKYLRVPA-L 185 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 186 SDVPYPFEAEVHLVIELYSR 205 >gi|46486574|gb|AAS98723.1| ribosomal protein subunit 4 [Touwiodendron diversifolium] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYQIPNHLTYSSLEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + + LVVE+YSR Sbjct: 177 ---LNNELIGLKINELLVVEYYSR 197 >gi|3098164|gb|AAC15530.1| small ribosomal protein 4 [Plagiobryum donianum] gi|27227939|gb|AAN85767.1| ribosomal protein subunit 4 [Bryum preissianum] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|228016097|gb|ACP50935.1| ribosomal protein S4 [Pinus rzedowskii] Length = 201 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RL+ I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRTKGSTGQVLLQLLEMRLNNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|222084129|ref|YP_002519581.1| ribosomal protein S4 [Keteleeria davidiana] gi|220983681|dbj|BAH11447.1| ribosomal protein S4 [Keteleeria davidiana] Length = 201 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRP----KYRNDSINRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ N Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRDKLPNHLTFNSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|70732860|ref|YP_262627.1| 30S ribosomal protein S4 [Pseudomonas fluorescens Pf-5] gi|90101707|sp|Q4K556|RS4_PSEF5 RecName: Full=30S ribosomal protein S4 gi|68347159|gb|AAY94765.1| ribosomal protein S4 [Pseudomonas fluorescens Pf-5] Length = 206 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 72/211 (34%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +K+A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKQAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG++VN+ SY+ + GDV+ V++K+K +++A L A+R E++ V+ + Sbjct: 119 SHKSISVNGQTVNVPSYQVRAGDVVAVREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|3098254|gb|AAC15575.1| small ribosomal protein 4 [Bryolawtonia vancouveriensis] gi|67036078|gb|AAY62965.1| small ribosomal protein subunit 4 [Dolichomitriopsis diversiformis] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|85001769|gb|ABC68422.1| small ribosomal protein 4 [Goniomitrium acuminatum] Length = 196 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGVLPGLSNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A R++G T L+ LE RLD +V+R PTI ARQ VNHRHVLVN Sbjct: 57 ERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHVLVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + +++ VP +++ + +I Sbjct: 117 IVDIPSYRCKPQDFITIKNRQKSQAIITKNIDFSQKYKVPNHLTFDSVQKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|46486586|gb|AAS98729.1| ribosomal protein subunit 4 [Rutenbergia madagassa] Length = 200 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K A + + + ++ +P +++ + + Sbjct: 117 VNDYIVDIPSYRCKPQDFITIKNQRKYEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDSESIGLKINELLVVEYYSR 198 >gi|3098194|gb|AAC15545.1| small ribosomal protein 4 [Orthodontium lineare] Length = 197 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LVN Sbjct: 57 TERQLLNYVRVARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 RIVDIPSYRCKPQDFITIKDQQKSQAIIDKNLDFYQKSKIPNHLTYNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|296105004|ref|YP_003615150.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059463|gb|ADF64201.1| 30S ribosomal protein S4 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 202 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 123/210 (58%), Gaps = 16/210 (7%) Query: 5 ESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 K K+ RR G +L+ + K + PG HG RK + S +G+QLR KQK Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLREKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T +RQ V+ Sbjct: 57 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAESRQLVS 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMV 176 H+ ++VNGR VNI SY+ K DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 116 HKAIMVNGRVVNIASYQVKANDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P + +L+VE YS+ Sbjct: 176 GTFKRQPER---SDLSADINEHLIVELYSK 202 >gi|11121224|emb|CAC14788.1| ribosomal protein subunit 4 [Leucolepis menziesii] gi|63191708|gb|AAY34815.1| small ribosomal protein subunit 4 [Leucolepis acanthoneura] Length = 198 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPR-RIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 56 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 57 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 115 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 116 NDRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ---LDRESIDLKINELLVVEYYSR 196 >gi|63100973|gb|AAY33111.1| small ribosomal protein 4 [Homomallium adnatum] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A + +G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103526|gb|ACM44292.1| small ribosomal protein subunit 4 [Brachythecium plumosum] Length = 204 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 6 YRGPRVRIIRRLGILPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 61 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 62 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 120 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 121 VNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 180 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 181 I---LDRESIGLKINELLVVEYYSR 202 >gi|67035803|gb|AAY62832.1| small ribosomal protein subunit 4 [Orthostichidium involutifolium] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY+CK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NSCIVDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67036040|gb|AAY62946.1| small ribosomal protein subunit 4 [Cirriphyllum cirrosum] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCIVDIPSYRCKPQDFITIKNQRKSETVINKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|67035811|gb|AAY62836.1| small ribosomal protein subunit 4 [Fabronia pusilla] Length = 198 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSEVIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLTINELLVVEYYSR 196 >gi|67035809|gb|AAY62835.1| small ribosomal protein subunit 4 [Juratzkaeella sinensis] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ YYG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFYYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKFEAIISKNIDFYQKSKIPNHLTYSSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESTGLKINELLVVEYYSR 197 >gi|86438872|emb|CAJ55416.1| small ribosomal protein 4 [Plagiochila acanthocaulis] Length = 196 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKALKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCELGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVE 202 ++ + + + LVVE Sbjct: 177 NQMINR---EWINLKINELLVVE 196 >gi|256830514|ref|YP_003159242.1| ribosomal protein S4 [Desulfomicrobium baculatum DSM 4028] gi|256579690|gb|ACU90826.1| ribosomal protein S4 [Desulfomicrobium baculatum DSM 4028] Length = 208 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K +I RR G L+ + K R+Y PG HG+ RK KPS + LQLR Sbjct: 1 MARYTGPKCRICRREGGKLFLKGDRCYTDKCAFERRAYAPGDHGKARK-KPSDYALQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++K YG I E +FR F+EA+R +G T NL+ LE+R+D + Y+ F + ARQ Sbjct: 60 KQKVRKMYG-ILEGQFRRYFEEAERRKGITGTNLLMLLETRIDNVAYKLGFANSRSQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H +NGR VN+ S + K GDV+EV+ ++K+ + EA + +A R VP ++ ++ Sbjct: 119 MVRHGLFSLNGRRVNVPSIQMKSGDVLEVRDRTKKNLVITEALEVVARRGVPAWLEIDAP 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +D+ +P M L+VE YS+ Sbjct: 179 AFKGSVKALPTR-EDITFP--MTEQLIVELYSK 208 >gi|63191736|gb|AAY34828.1| small ribosomal protein subunit 4 [Leptotheca gaudichaudii] Length = 198 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 NHIVDIPSYRCKPQDFITIKDRQKSQAIINKNLDFYQKYKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|83416512|gb|ABC18276.1| small ribosomal subunit protein 4 [Bryum bicolor] Length = 199 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|149279638|ref|ZP_01885767.1| 30S ribosomal protein S4 [Pedobacter sp. BAL39] gi|149229674|gb|EDM35064.1| 30S ribosomal protein S4 [Pedobacter sp. BAL39] Length = 202 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G K ++ ++Y PG HG +R+ K S + +QL KQK+K Sbjct: 1 MARYTGPKSKIARKFREPIFGPDKV-LDRKNYPPGQHGASKRRGKQSEYAVQLMEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR++F +A +G T NL+ LE+RLD VYR T AARQ V+H+ Sbjct: 60 YTYG-VLERQFRNLFTKASSRQGITGDNLLQLLEARLDNTVYRLGIATTRSAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV VNG VNI SY+ K GDVI V++KSK L ++ + + ++ N + F Sbjct: 119 HVTVNGEVVNIPSYQLKAGDVIAVREKSKTLEAITNSVAGRVINKFNWLDWNASELTGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ + P ++ NL+VE YS+ Sbjct: 179 LSYPNRDE---IPENIKENLIVELYSK 202 >gi|332107892|gb|EGJ09116.1| 30S ribosomal protein S4 [Rubrivivax benzoatilyticus JA2] Length = 207 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K+ +++ PG HG+ S+ S +G+QLR Sbjct: 1 MARYLGPKAKLSRREGTDLFLKSARRSIGDKAKFDSK---PGQHGRTSGSRTSDYGVQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA+R +G+T NL++ LESRLD +VYR F T +R Sbjct: 58 EKQKVKRMYG-VLERQFRRYFAEAERRKGNTGSNLLALLESRLDNVVYRMGFGSTRAESR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG+ VNI SY K GDV+ V++K+K V +A +LA+ E++ V+ Sbjct: 117 QLVSHKAITVNGQVVNIPSYMVKAGDVVAVREKAKNQLRVQDALKLAQTIGQCEWVQVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F ++P + + ++ L+VE YSR Sbjct: 177 TKMEGVFKKVPDRDQ---FGAEIKEALIVELYSR 207 >gi|20531128|gb|AAM27384.1| ribosomal protein 4 [Encalypta intermedia] Length = 194 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +V+R PTI ARQ VNHRHVLVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHVLVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I ++ + K A +++ +++ VP ++S + +I L Sbjct: 117 NIPSYRCKPQDFISIRDRQKSQAIIIKNIDFSQKSKVPNHLSFDSLQKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|228016727|gb|ACP51555.1| ribosomal protein S4 [Pinus aristata] Length = 201 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNMDLFQRDKLPNHLTFHPLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|328541120|gb|AEB21784.1| ribosomal protein S4 [Psiloclada clandestina] Length = 198 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K+ RR+G + + SY K S + ++L KQK++ +YG Sbjct: 1 RGPRVKVIRRLGALPGLTNRILESKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHIPIN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD+I +K K K + + L + +P +++ + + + + Sbjct: 117 NNIVDIPSYNCEPGDIITIKDKQKSQSVITRNINLFQNLKIPSHLTFDSIKLCGSINQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TINREWINLKINELLVVEYYSR 196 >gi|63101089|gb|AAY33169.1| small ribosomal protein 4 [Orthorrhynchium elegans] Length = 198 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S+ H K S + ++L KQK++ +YG Sbjct: 1 RGPRMRIIRRLGTLPGLTNKTPQLKSSFI---HQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI+ ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIYGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + A + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQQNSEALINKNIDFYKKYKIPNHLTYSFLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|49182795|gb|AAT57859.1| small ribosomal protein [Scapania nemorea] Length = 195 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+LVN + Sbjct: 57 RQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILVNNDT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRNKQKSQSIITKNLNLFQKLKIPSHLTFDLTQLQGSVNQ---TV 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NRECINLKINELLVVEYYSR 193 >gi|67004474|gb|AAY61400.1| 30S ribosomal protein S4 [Rickettsia felis URRWXCal2] Length = 221 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 96/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 SK+K RR+G +LWG K NTR+Y PG HGQ K S +GL L+AKQ++K +YG ++ Sbjct: 23 SKYKASRRLGVSLWGDSKDAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQRLKCHYGRVT 82 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 EK+FR+IF A + +G+T N I LESRLDT+VYR PTIFAARQ V+H H+ +NG+ Sbjct: 83 EKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLVSHGHIKLNGK 142 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 +I S R KEGDVIEVK+ KQ+ + E+ + P Y+S + ++ ++R+P+ L Sbjct: 143 KADIASIRLKEGDVIEVKESVKQIPLIQESVSKQAQTTPGYLSFDVPSLTGKYLRVPA-L 201 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 DVPYP + +LV+E YSR Sbjct: 202 SDVPYPFEAEVHLVIELYSR 221 >gi|319948696|ref|ZP_08022817.1| 30S ribosomal protein S4 [Dietzia cinnamea P4] gi|319437598|gb|EFV92597.1| 30S ribosomal protein S4 [Dietzia cinnamea P4] Length = 201 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+G +L G + R + PG HG+ R K S + QL+ KQK + Sbjct: 1 MARYTGPVTRKSRRLGVDLVGGD-TAFERRPFPPGHHGRAR-IKESEYRTQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EA+R G T NL+ LESRLD +VYRA T ARQ V H H Sbjct: 59 TYG-VMEKQFRRYYEEANRRAGKTGENLLQILESRLDNVVYRAGLARTRRQARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 LVN + V I SYR + D+I+V+ KS ++ A + L ER VP ++ V + Sbjct: 118 FLVNDQKVTIPSYRVSQYDIIDVRPKSTKMDWFEIAQETLGERPVPAWLQVVPTTLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V +Q L+VE YS+ Sbjct: 178 HQLPERAQ---IEVPLQEQLIVELYSK 201 >gi|118602237|ref|YP_903452.1| SSU ribosomal protein S4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|152112257|sp|A1AVM4|RS4_RUTMC RecName: Full=30S ribosomal protein S4 gi|118567176|gb|ABL01981.1| SSU ribosomal protein S4P [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 208 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHG-QRRKSKPSYFGLQLRAK 55 M++ K+ RR G +L+ + ++++ PG+HG R+ K + +GLQLR K Sbjct: 1 MARYTGPTCKLARREGTDLFLKSGIRSLDSKCNVTQLPGMHGANARRQKGTEYGLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG I EK+FR +K+A + +G T NL+S LE RLD +VYR F T ARQ Sbjct: 61 QKVRRIYG-ILEKQFRLYYKKASQKKGSTGENLLSLLECRLDNVVYRMGFGSTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISVNHDN 174 V+H+ +L+NG VNI SY+ D I +++K+K+ + + A +LAE+ P+++ ++H Sbjct: 120 VSHKSILMNGLVVNIPSYQVSVNDEISIREKAKKQSRIQLALELAEQSTQPQWLDIDHKA 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P+ + +Q +L+VE YS+ Sbjct: 180 LKGVFKNVPARDE---LSSDIQEHLIVELYSK 208 >gi|67035793|gb|AAY62827.1| small ribosomal protein subunit 4 [Leptopterigynandrum austro-alpinum] Length = 199 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQXLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|330976664|gb|EGH76707.1| 30S ribosomal protein S4 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 206 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 72/211 (34%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HGQRR + S +G QLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSGVRAIESKCNIEAAPGIHGQRR-GRQSDYGTQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++F +K+A +G T NL+ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRIYG-VLERQFSGYYKKAAGKKGATGENLLQLLECRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ V VNG++VN+ SY+ + GDV+ +++K+K +++A L A+R E++ V+ + Sbjct: 119 SHKSVSVNGKTVNVPSYQVRAGDVVAIREKAKNQLRIVQALDLCAQRGRVEWVEVDTEKK 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P+ + +L+VE YS+ Sbjct: 179 SGVFKNVPAR---SDLSADINESLIVELYSK 206 >gi|161616441|ref|YP_001590406.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224585211|ref|YP_002639010.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|161365805|gb|ABX69573.1| hypothetical protein SPAB_04256 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224469739|gb|ACN47569.1| 30S ribosomal protein S4 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|321226467|gb|EFX51517.1| SSU ribosomal protein S4p (S9e) [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 202 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 16/210 (7%) Query: 5 ESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 K K+ RR G +L+ + K + PG HG RK + S +G+QLR KQK Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLREKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+ Sbjct: 57 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMV 176 H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 116 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ R P + +L+VE YS+ Sbjct: 176 GTYKRKPER---SDLSADINEHLIVELYSK 202 >gi|67035742|gb|AAY62802.1| small ribosomal protein subunit 4 [Dicranoweisia crispula] Length = 194 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K K A + + +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNGQKSQAIISKNIDFSQKYKVPNHLTFNSLQKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIDLKINELLVVEYYSR 192 >gi|261400076|ref|ZP_05986201.1| ribosomal protein S4 [Neisseria lactamica ATCC 23970] gi|313667465|ref|YP_004047749.1| 30S ribosomal protein S4 [Neisseria lactamica ST-640] gi|269210301|gb|EEZ76756.1| ribosomal protein S4 [Neisseria lactamica ATCC 23970] gi|309379135|emb|CBX22266.1| 30S ribosomal protein S4 [Neisseria lactamica Y92-1009] gi|313004927|emb|CBN86353.1| 30S ribosomal protein S4 [Neisseria lactamica 020-06] Length = 206 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++++ PG HG +K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKLDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P +++V+ D + Sbjct: 119 SHKAIAVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAIQIGLPSWVAVDADKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + + LVVEFYS+ Sbjct: 179 EGVFKNMPDRSE---LTGDINEQLVVEFYSK 206 >gi|46486548|gb|AAS98710.1| ribosomal protein subunit 4 [Sciadocladus menziesii] Length = 197 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + + +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVDIPSYRCKPQDFITIKDRQKSQTIISKNIDFSQKYKIPNHLTYNSLEKKGFVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|297205789|ref|ZP_06923184.1| 30S ribosomal protein S4 [Lactobacillus jensenii JV-V16] gi|297148915|gb|EFH29213.1| 30S ribosomal protein S4 [Lactobacillus jensenii JV-V16] Length = 235 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G+QL KQK++ Sbjct: 33 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGEHGPNNRGRLSEYGMQLHEKQKLRW 91 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + +G+ N + LE RLD IVYR T ARQ VNH Sbjct: 92 MFG-LNERQFRNLFNRAGKIRQGEHGTNFMVLLERRLDNIVYRLGLATTREQARQLVNHG 150 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + + + Sbjct: 151 HILVDGKRVDIPSYEVKVGQEISLKEKSKNLQQVKDALE-AVVSRPSFVSFDENKLTGSL 209 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + LVVE+Y++ Sbjct: 210 VRLPERDEMEP---EINEALVVEYYNK 233 >gi|149912288|ref|ZP_01900859.1| 30S ribosomal protein S4 [Moritella sp. PE36] gi|149804633|gb|EDM64692.1| 30S ribosomal protein S4 [Moritella sp. PE36] Length = 206 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 126/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG+HG RK + S +GLQLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIESKCKIDNAPGVHG-ARKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+++KEA R +G+T NL++ LE RLD +VYR F T +RQ V Sbjct: 60 KVRRMYG-VLEKQFRNLYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGSTRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ ++VNG+ VNI SY+ K D + +++K+K+ A + A +++ +R+ ++ V+ + Sbjct: 119 SHKAIVVNGKVVNIPSYKVKVNDTVSIREKAKKQARIASALEISEQREKASWVEVDSKTL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + R+P + L+VE YS+ Sbjct: 179 EGVYKRVPER---SDLSADINEQLIVELYSK 206 >gi|328541140|gb|AEB21794.1| ribosomal protein S4 [Telaranea palmata] Length = 200 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K +Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKILKPKANYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+L+ Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHILI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GDVI +K K + + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCESGDVITIKDKQRSRSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|85001771|gb|ABC68423.1| small ribosomal protein 4 [Goniomitrium seroi] gi|85001773|gb|ABC68424.1| small ribosomal protein 4 [Goniomitrium seroi] Length = 196 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGVLPGLSNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A R++G T L+ LE RLD +V+R PTI ARQ VNHRHVLVN Sbjct: 57 ERQLLNYVRIARRAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHVLVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + +++ VP +++ + +I Sbjct: 117 IVDIPSYRCKPQDFITIKNRQKSQAIITKNINFSQKYKVPNHLTFDSVQKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|328541066|gb|AEB21757.1| ribosomal protein S4 [Kurzia helophila] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+ Y K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTTKTLKQKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T + LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 LTERQLLKYVRIARKAKGSTGQVSLQLLEMRLDNTILRLGMASTIPGARQLVNHRHIPIN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD+I +++K K + + + L + +P +++ + + + + Sbjct: 117 NDIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGSIDQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TINRESIDLKINELLVVEYYSR 196 >gi|69216104|gb|AAZ03890.1| ribosomal protein S4 [Ginkgo biloba] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P G + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLRALPGLTSKRP----KSGNDPINRSSSGKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D I++R+ TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRSDNIIFRSGMALTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK DVI ++ + + A + L++R +P +++++ Sbjct: 116 LLVNDRVVDIPSYRCKPQDVITIRDQQRSRAIIKNNINLSQRDKMPNHLTLHSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 RI S + + LVVE+YSR Sbjct: 176 NRIIDSK---WINLKINELLVVEYYSR 199 >gi|118626075|emb|CAL39341.1| small ribosomal protein 4 [Odontoschisma macounii] Length = 202 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLRSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD V+R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N ++I SY C+ GDVI +K K K + + + L+++ +P +++ + + + Sbjct: 117 ISINNDIIDIPSYDCEPGDVITIKDKQKSRSIITKNINLSQKSKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 177 DQIVNR---EWVNLKINELLVVEYYSR 200 >gi|83416508|gb|ABC18274.1| small ribosomal subunit protein 4 [Breutelia chrysocoma] Length = 196 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 IVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|67036084|gb|AAY62968.1| small ribosomal protein subunit 4 [Pilotrichella flexilis] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ N + Sbjct: 116 VNDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|67035970|gb|AAY62911.1| small ribosomal protein subunit 4 [Porotrichopsis flacca] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDQRKSEIIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035972|gb|AAY62912.1| small ribosomal protein subunit 4 [Homalia trichomanoides] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|157689564|gb|ABV65338.1| ribosomal protein S4 [Stylobasium spathulatum] Length = 195 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPQARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I + + K A + + R ++P+++++ +I S Sbjct: 116 MVDIPSYRCKPQDIITARDEQKSRALIQNYLDSSPREELPKHLTLQPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|325267152|ref|ZP_08133820.1| 30S ribosomal protein S4 [Kingella denitrificans ATCC 33394] gi|324981390|gb|EGC17034.1| 30S ribosomal protein S4 [Kingella denitrificans ATCC 33394] Length = 206 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + + ++ PG HG +K + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLARREGTDLYLKSARRSLESKCKMDSAPGQHG-AKKPRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA LA + +P +++V+ + Sbjct: 119 SHKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEAMGLATQIGLPSWVAVDASKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + + LVVEFYS+ Sbjct: 179 EGTFKNVPDRAE---LYSDINEQLVVEFYSK 206 >gi|67035787|gb|AAY62824.1| small ribosomal protein subunit 4 [Meteorium illecebrum] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVTQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|258508250|ref|YP_003171001.1| 30S ribosomal protein S4P [Lactobacillus rhamnosus GG] gi|258539461|ref|YP_003173960.1| 30S ribosomal protein S4P [Lactobacillus rhamnosus Lc 705] gi|257148177|emb|CAR87150.1| SSU/30S ribosomal protein S4P [Lactobacillus rhamnosus GG] gi|257151137|emb|CAR90109.1| SSU/30S ribosomal protein S4P [Lactobacillus rhamnosus Lc 705] gi|259649567|dbj|BAI41729.1| 30S ribosomal protein S4 [Lactobacillus rhamnosus GG] Length = 203 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ ++I SY + G VI ++++S+ LA V EA + P Y++ + + + Sbjct: 119 HITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEAIENTVSR-PAYVTFDDNKKEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + P + +LVVE+Y Sbjct: 178 VRLPERGELEP---EVDESLVVEYY 199 >gi|24473848|gb|AAL82768.1| small ribosomal subunit protein 4 [Imbribryum muehlenbeckii] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ V+HRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVSHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ +P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKIPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|3098154|gb|AAC15525.1| small ribosomal protein 4 [Scouleria aquatica] Length = 199 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSS---TNQSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYIRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A + + +++ VP +++ N +I Sbjct: 117 NDCIVNIPSYRCKPLDFITIKNRQKSQAIISKNINFSQKYKVPTHLTFNSLQKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LNRESIDLKINELLVVEYYSR 197 >gi|85858172|ref|YP_460374.1| 30S ribosomal protein S4P [Syntrophus aciditrophicus SB] gi|123515693|sp|Q2LQD0|RS4_SYNAS RecName: Full=30S ribosomal protein S4 gi|85721263|gb|ABC76206.1| SSU ribosomal protein S4P [Syntrophus aciditrophicus SB] Length = 209 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + S ++ RR G L+ + K R Y PG HGQ R+ +PS +G+QLR Sbjct: 1 MARYKESACRLCRREGLKLFLKGDRCYGEKCAFERRGYAPGEHGQLRRKQPSDYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + EK+FR F++AD+ +G T NL+ +LE RLD +VYR F + ARQ Sbjct: 61 KQKLKRMYG-LLEKQFRGYFEKADKKKGITGTNLLLYLERRLDNMVYRLGFANSRNEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 V H H LVNGR VNI S+ GD IEV ++ ++ ++EA + + R +P+++ + + Sbjct: 120 LVRHNHFLVNGRKVNIPSFLVNIGDFIEVTEEGRKNNKIIEAMETIVRRGIPQWLELEQE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P+ + + +Q LVVE YS+ Sbjct: 180 NFKGKVKMLPTREE---LTMPIQEQLVVELYSK 209 >gi|63145917|gb|AAY33896.1| small ribosomal protein 4 [Symphyogyna marginata] Length = 197 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G L G + +RS G Q K S + ++L KQK++ +YG Sbjct: 1 GPRAKIIRRLGA-LPGXSYEMIGSRS---GYTNQLATNKKISQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN Sbjct: 56 LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIP 183 +VNI SY CK DVI +K + + + + + L ER +P +++ + + +I Sbjct: 116 DNAVNIPSYNCKPQDVITIKDRRESQSVITKNIHLFRERKIPNHLTFDSTRFCGSVNQII 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 DR---EWISLKINELLVVEYYSR 195 >gi|310765574|gb|ADP10524.1| 30S ribosomal protein S4 [Erwinia sp. Ejp617] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 16/210 (7%) Query: 5 ESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 K K+ RR G +L+ + K + PG HG RK + S +G+QLR KQK Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLREKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+ Sbjct: 57 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMV 176 H+ ++VNGR V+I SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 116 HKSIMVNGRVVSIASYQVTPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDATKME 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP + +L+VE YS+ Sbjct: 176 GVFKRIPERTD---LSADINEHLIVELYSK 202 >gi|237653971|ref|YP_002890285.1| 30S ribosomal protein S4 [Thauera sp. MZ1T] gi|237625218|gb|ACR01908.1| ribosomal protein S4 [Thauera sp. MZ1T] Length = 209 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCSIERRAYAPGQHGQRSGQRLSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR ++ EADR RG T NL+ LE RLD + YR F + ARQ Sbjct: 61 KQKIRRIYG-VLERQFRKVYAEADRRRGQTGENLLQLLEGRLDAVAYRMGFGASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H VLVNG+ VNI SY + GDV+E+ ++++ V A + AE R PE++ V+ Sbjct: 120 VVRHNGVLVNGKRVNIPSYVVRPGDVVELTERARGHLRVKAALEAAESRGFPEWLEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P + P + LVVE YSR Sbjct: 180 AGKGTFKAYPVRSE---LPPTINEGLVVELYSR 209 >gi|148244353|ref|YP_001219047.1| 30S ribosomal protein S4 [Candidatus Vesicomyosocius okutanii HA] gi|172047241|sp|A5CXI8|RS4_VESOH RecName: Full=30S ribosomal protein S4 gi|146326180|dbj|BAF61323.1| 30S ribosomal protein S4 [Candidatus Vesicomyosocius okutanii HA] Length = 208 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQR-RKSKPSYFGLQLRAK 55 M++ K+ RR G +L+ + ++++ PG+HG R+ K + +GLQLR K Sbjct: 1 MARYTGPTCKLARREGADLFLKSGIRSLDSKCKVTQLPGMHGASARRQKGTEYGLQLREK 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK+++ YG I EK+FR +K+A + +G T NL+S LE RLD +VYR F T ARQ Sbjct: 61 QKIRRIYG-ILEKQFRLYYKKASQKKGSTGENLLSLLECRLDNVVYRMGFASTRAEARQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISVNHDN 174 V+H+ ++VNG VNI SY+ D I +++K+K+ + + A +L+ + P+++ V++ Sbjct: 120 VSHKSIMVNGLVVNIPSYQVSVNDKISIREKAKKQSRIQLALELSGQSTQPQWLDVDNKT 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +PS + P +Q +L+VE YS+ Sbjct: 180 LKGVFKNVPSRDE---LPSDIQEHLIVELYSK 208 >gi|63191677|gb|AAY34800.1| small ribosomal protein subunit 4 [Homaliodendron piniforme] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPHVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + ++ ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNTEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|6002027|emb|CAA58920.1| ribosomal protein S4 [Arum italicum] Length = 196 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALAGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 +LVNG V+I SYRCK D+I K K + A + L + +VP++++++ + Sbjct: 116 ILVNGGIVDIPSYRCKPRDIIATKDKQRSKALIQNNIALSSHEEVPKHLTIDSFHNKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|327444033|gb|EGE90687.1| ribosomal protein S4 [Propionibacterium acnes HL043PA1] gi|327449433|gb|EGE96087.1| ribosomal protein S4 [Propionibacterium acnes HL043PA2] Length = 201 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRGR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VY A T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYLAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|90655388|gb|ABD96229.1| 30S ribosomal protein S4 [uncultured marine type-A Synechococcus GOM 3M9] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RSY PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSYPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-VSERQLVRYVKKARAQEGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V+VNGR +I SY+CK GDVI ++++ + ++P ++ ++ + A Sbjct: 117 VMVNGRVTDIASYQCKTGDVIAIRERKGSKKLAEGNLEFPGLANIPPHMELDKTKLTAKI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V + + + LVVE+YSR Sbjct: 177 VG---KCEREWVALEINELLVVEYYSR 200 >gi|145408427|ref|NP_817246.2| ribosomal protein S4 [Pinus koraiensis] gi|324986396|ref|YP_004276268.1| ribosomal protein S4 [Pinus lambertiana] gi|148887422|sp|Q85WX8|RR4_PINKO RecName: Full=30S ribosomal protein S4, chloroplastic gi|145048679|gb|AAO74091.2| ribosomal protein S4 [Pinus koraiensis] gi|228016152|gb|ACP50989.1| ribosomal protein S4 [Pinus sibirica] gi|228016790|gb|ACP51617.1| ribosomal protein S4 [Pinus armandii] gi|228017160|gb|ACP51981.1| ribosomal protein S4 [Pinus cembra] gi|323514245|gb|ADX89792.1| ribosomal protein S4 [Pinus lambertiana] Length = 203 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKD--SMNMNRSSSRKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 59 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 118 IRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 178 NQIIDSK---WISLKINELLVVEYYSR 201 >gi|328541156|gb|AEB21802.1| ribosomal protein S4 [Lepidozia fauriana] Length = 195 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRNKQKSRSIITKNVNFFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|49182813|gb|AAT57868.1| small ribosomal protein [Triandrophyllum subtrifidum] Length = 195 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGVLPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-VTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHIAINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + + + Sbjct: 117 VDIPSYNCEPGDIITIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGSINQAINR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWINLKINELLVVEYYSR 193 >gi|328541142|gb|AEB21795.1| ribosomal protein S4 [Telaranea lawesii] Length = 200 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSPSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ LE RLD + R PTI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMAPTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C GD I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCGPGDRITIRDKQKSRSIITKNVNLFQNVKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWINLKINELLVVEYYSR 197 >gi|294789218|ref|ZP_06754457.1| ribosomal protein S4 [Simonsiella muelleri ATCC 29453] gi|294482959|gb|EFG30647.1| ribosomal protein S4 [Simonsiella muelleri ATCC 29453] Length = 206 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 83/211 (39%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + + ++ PG HG +KS+ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLARREGTDLYLKSARRSLESKCKMESAPGQHG-AKKSRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR F EADR +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KIRRIYG-VLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG+ VNI S++ K GDV+ V++K+K+ + EA L A+ +P ++SV+ + M Sbjct: 119 SHKALTVNGQVVNIPSFQVKAGDVVAVREKAKKQVRIQEALGLAAQIGMPSWVSVDANKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + + LVVEFYS+ Sbjct: 179 EGTFKNVPDRAE---LYSDINEQLVVEFYSK 206 >gi|226356866|ref|YP_002786606.1| 30S ribosomal protein S4 [Deinococcus deserti VCD115] gi|259495272|sp|C1CXD5|RS4_DEIDV RecName: Full=30S ribosomal protein S4 gi|226318856|gb|ACO46852.1| putative 30S ribosomal protein S4 [Deinococcus deserti VCD115] Length = 206 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQK 57 M + S K+ RR G NL K ++ R Y PG HGQRR + +PS + ++LR KQK Sbjct: 1 MGRFRGSITKLSRREGINLAETEKVQKYLDKRPYAPGQHGQRRGRGRPSDYSVRLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 + + YG + EK+FR++F+EA G T + LE RLD +V+R F T ARQFV Sbjct: 61 LARLYG-MGEKQFRNLFEEAASVPGVTGTVFLQLLERRLDNVVFRMGFASTRRQARQFVG 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMV 176 H H+LVNG+ V+I SYR K GD I V + S+Q+ V E + R V ++ ++ +N Sbjct: 120 HGHILVNGKKVDIPSYRVKIGDEISVFEGSRQMGFVQENMEAQKRRRVSPWVELDVENFK 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R+P+ + + N ++E+YSR Sbjct: 180 GTFSRLPAR---EDLALPINENFIIEYYSR 206 >gi|92417443|gb|ABE76817.1| ribosomal protein subunit 4 [Notothylas orbicularis] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKTPHVKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYIRIARKTKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDCITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|323404250|gb|ADX62379.1| small ribosomal protein subunit 4 [Grimmia cribrosa] Length = 198 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K +++ +++ +P +++ N +I Sbjct: 117 NRVVNIPSYRCKSQDFITIKDRQKSQTMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|18920731|gb|AAL82410.1| ribosomal protein system 4 [Bardunovia baicalensis] Length = 197 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKNKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|67035927|gb|AAY62890.1| small ribosomal protein subunit 4 [Sanionia orthothecioides] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NNCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035955|gb|AAY62904.1| small ribosomal protein subunit 4 [Handeliobryum sikkimense] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDCITIKDQQKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|110833282|ref|YP_692141.1| 30S ribosomal protein S4 [Alcanivorax borkumensis SK2] gi|123149715|sp|Q0VSH9|RS4_ALCBS RecName: Full=30S ribosomal protein S4 gi|110646393|emb|CAL15869.1| 30S ribosomal protein S4 [Alcanivorax borkumensis SK2] Length = 210 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 12/214 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLH---GQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + P+ ++ PG RR ++ S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKADQAPGQAAGASGRRPARLSDYGVQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FRS +K+A S+G T L+ LE RLD +VYR F T AR Sbjct: 61 EKQKVRRTYG-VLEKQFRSYYKKAAASKGATGEVLLQLLEGRLDNVVYRMGFGSTRSEAR 119 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+HR +LVNG+SVN+ SY+ K GD I V++KSK V A +LA +R +I V+ Sbjct: 120 QLVSHRAILVNGQSVNVASYQVKPGDQINVREKSKNQLRVKNAMELAQQRGFMPWIEVDD 179 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T+ P + P + NL+VE YS+ Sbjct: 180 KKLEGTYKAKPER---IDLPAEINENLIVELYSK 210 >gi|24473812|gb|AAL82749.1| small ribosomal subunit protein 4 [Bryum argenteum] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKAPQLKTNSI---NQSIFNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035805|gb|AAY62833.1| small ribosomal protein subunit 4 [Bryocrumia andersonii] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|237688629|ref|YP_002905246.1| ribosomal protein S4 [Pinus gerardiana] gi|226876089|gb|ACO89345.1| ribosomal protein S4 [Pinus gerardiana] gi|228016279|gb|ACP51114.1| ribosomal protein S4 [Pinus strobus] gi|228016915|gb|ACP51740.1| ribosomal protein S4 [Pinus ayacahuite] gi|228017283|gb|ACP52102.1| ribosomal protein S4 [Pinus flexilis] gi|228017348|gb|ACP52166.1| ribosomal protein S4 [Pinus lambertiana] gi|228017542|gb|ACP52357.1| ribosomal protein S4 [Pinus monticola] gi|228017604|gb|ACP52418.1| ribosomal protein S4 [Pinus parviflora var. pentaphylla] gi|228017668|gb|ACP52481.1| ribosomal protein S4 [Pinus peuce] Length = 203 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKD--SMNMNRSSSRKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 59 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 118 IRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 178 NQIIDSK---WISLKINELLVVEYYSR 201 >gi|67035791|gb|AAY62826.1| small ribosomal protein subunit 4 [Pterigynandrum filiforme] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NYCMVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDREAIGLKINELLVVEYYSR 197 >gi|86438910|emb|CAJ55427.1| small ribosomal protein 4 [Plagiochila fruticella] Length = 194 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGVLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+H+ +N Sbjct: 57 RQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHKHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLRGSVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWLILKINELLVVEYYSR 193 >gi|67035582|gb|AAY62722.1| small ribosomal protein subunit 4 [Oreas martiana] Length = 194 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P ++ K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLK---ASSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGKVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I VK + K A +++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITVKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|71276503|ref|ZP_00652778.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Dixon] gi|71900586|ref|ZP_00682713.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] gi|170729723|ref|YP_001775156.1| 30S ribosomal protein S4 [Xylella fastidiosa M12] gi|226703312|sp|B0U5M2|RS4_XYLFM RecName: Full=30S ribosomal protein S4 gi|71162680|gb|EAO12407.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Dixon] gi|71729643|gb|EAO31747.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] gi|167964516|gb|ACA11526.1| 30S ribosomal protein S4 [Xylella fastidiosa M12] Length = 208 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + R PG HG RKSK S + QLR Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQR---PGQHGAVRKSKLSDYASQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K A +G+T NL+ LE+RLD ++YR F T AAR Sbjct: 58 EKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVN 171 Q V+HR VLVNG+ VN+ SY K GD++ + Q++++ V E+ + ++ ++ V+ Sbjct: 117 QLVSHRGVLVNGKIVNLPSYHVKPGDIVALSQRAQKYLCVQESLTIKDQHGSAFSWVEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P P + L+VE YS+ Sbjct: 177 SEKFSGVFKALPDRAD---LPSDINEALIVELYSK 208 >gi|313885082|ref|ZP_07818834.1| ribosomal protein S4 [Eremococcus coleocola ACS-139-V-Col8] gi|312619773|gb|EFR31210.1| ribosomal protein S4 [Eremococcus coleocola ACS-139-V-Col8] Length = 201 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 7/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L K ++ R Y PG HG R K + +G QL KQK++ Sbjct: 1 MARYTGPAWKKSRRLGISLTETGKE-LSRRPYAPGQHGNARH-KVTEYGAQLNEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR++F +A + G N + LE+RLD +VYR + T ARQ V H H Sbjct: 59 MYG-LNERQFRTLFTKAAKMEGKHGENFMVILETRLDNLVYRLGYASTRRQARQLVAHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + V+G+ V+I SY K VI ++++S+ LA + E + + +++S + +N Sbjct: 118 ITVDGQRVDIPSYLVKPEQVIGLRERSQDLAIIKENLEAVVSRL-DFVSFDENNKEGKMT 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + LVVE+Y++ Sbjct: 177 RLPERGE---LSAEIDEALVVEYYNK 199 >gi|297623301|ref|YP_003704735.1| 30S ribosomal protein S4 [Truepera radiovictrix DSM 17093] gi|297164481|gb|ADI14192.1| ribosomal protein S4 [Truepera radiovictrix DSM 17093] Length = 205 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 7/209 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M ++ K+ RR G NL PK + R Y PG HGQRR K S +G++LR KQK+ Sbjct: 1 MGRQRDPIVKLSRREGVNLAETPKVQKYMERRPYPPGQHGQRRSRKLSDYGVRLREKQKL 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 ++ Y ++SEK+F ++F EA R +G T + LESRLD +V+R T ARQFV H Sbjct: 61 RRLY-NLSEKQFSNLFAEAVRQQGATGGVFLQLLESRLDNVVFRLGIAHTRRQARQFVTH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVA 177 RH+LVNG+ V++ SYR + GD I V +S+ + + +R + ++ + +++ Sbjct: 120 RHILVNGKVVDVPSYRVRPGDEIAVAPRSRSNEVIKSNVEARKRGRLSPWLEFDSESLKG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+PS +D+ PV V+E+YSR Sbjct: 180 KFQRLPSR-EDITVPV--NELQVIEYYSR 205 >gi|222103562|gb|ACM44310.1| small ribosomal protein subunit 4 [Thuidium tamariscinum] Length = 203 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G L G +S K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGT-LPGLTNKISQLKSGSINQ--STSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|157689420|gb|ABV65266.1| ribosomal protein S4 [Begonia cucullata] Length = 197 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 9/203 (4%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K RR+G K P G L Q SK S + ++L KQK++ +YG Sbjct: 1 RGPRFKKIRRLGALPGLTSKKP----RTGSDLKNQSHSSKKSQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+ VN Sbjct: 56 LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNIIFRLGIASTIPQARQLVNHRHIFVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIP 183 G V+I SYRCK D+I K + K A + + +VP++++++ +I Sbjct: 116 GGIVDIPSYRCKPRDIITAKDEQKSRALIQNYLNSSPSEEVPKHLTLHPFQYKGLVNQII 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 S + + LVVE+YSR Sbjct: 176 DSK---SVGLKINELLVVEYYSR 195 >gi|17025837|gb|AAL32084.1| ribosomal protein 4 [Mitthyridium sp. Mishler 7/23/98] Length = 201 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K P + + K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVKIIRRLGILSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 59 G-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN VNI SY+CK D I +K + K +++ ++ + P +++ N + Sbjct: 118 VNNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFFSKHKTPNHLTFNSVEKKGLVNQ 177 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 178 I---LDQESIGLKINELLVVEYYSR 199 >gi|328541062|gb|AEB21755.1| ribosomal protein S4 [Telaranea trilobata] Length = 200 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+ Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKTLKQKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE RLD ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRTARKAKGSTGQVSLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P ++ + + + R Sbjct: 117 NYNIVDIPSYNCEPGDIITIRAKPKSQSVITKNINLFQNLKIPSHLIFDSTKLCGSINR- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINRESIDLKINELLVVEYYSR 197 >gi|228016658|gb|ACP51487.1| ribosomal protein S4 [Pinus albicaulis] Length = 203 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKD--SMNMNRSSSRKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 59 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 118 IRINDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 178 NQIIDSK---WISLKINELLVVEYYSR 201 >gi|33862500|ref|NP_894060.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9313] gi|124023809|ref|YP_001018116.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9303] gi|41017827|sp|Q7V8U9|RS4_PROMM RecName: Full=30S ribosomal protein S4 gi|152112246|sp|A2CBJ1|RS4_PROM3 RecName: Full=30S ribosomal protein S4 gi|33640613|emb|CAE20402.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9313] gi|123964095|gb|ABM78851.1| 30S ribosomal protein S4 [Prochlorococcus marinus str. MIT 9303] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RS+ PG HGQ R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSHPPGQHGQARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE+RLD + +R F PT+ ARQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAQDGSTGTNLLKLLENRLDNVCFRLGFGPTVPGARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNGR ++I SY+CK GDV+ ++++ + +VP +I ++ M A Sbjct: 117 VTVNGRVLDIASYQCKAGDVVAIRERKGSKKLAEANLEFPGLANVPPHIELDKAKMSAK- 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I S + + + LVVE+YSR Sbjct: 176 --IISKCEREWVALEINELLVVEYYSR 200 >gi|63100995|gb|AAY33122.1| small ribosomal protein 4 [Pireella angustifolia] Length = 198 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITEQQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 HCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|46911985|emb|CAG18783.1| putative ribosomal protein S4 [Photobacterium profundum SS9] Length = 202 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 124/207 (59%), Gaps = 10/207 (4%) Query: 5 ESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + ++T+ PG HG R+ + S +G+QLR KQK+++ Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHG-ARRGRLSDYGVQLREKQKVRR 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T +RQ V+H+ Sbjct: 60 TYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGSTRAESRQLVSHKA 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG VN+ S++ DV+ +++K+K A + A ++A +R++P ++ V++ + TF Sbjct: 119 ILVNGTVVNVPSFKVAANDVVSIREKAKNQARIKAALEVATQRELPTWVEVDNSKLEGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + +L+VE YS+ Sbjct: 179 KRLPER---SDLSADINEHLIVELYSK 202 >gi|157689452|gb|ABV65282.1| ribosomal protein S4 [Coriaria nepalensis] Length = 195 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S + ++L KQK++ +YG I+ Sbjct: 1 PRFKKIRRLGALPGLTSKRP----RTGSDLKNQPRSGKKSQYRIRLEEKQKLRFHYG-IT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGC 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K + K + + ++P++++++ +I S Sbjct: 116 IVDIPSYRCKPRDIITAKDEQKSRTLIQNYLDSSPHEELPKHLTLHPVQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|188012809|gb|ACD45543.1| ribosomal protein S4 [Riella sp. SC s.n.] Length = 195 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + Y + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINDNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK D+I +K + K + + + ++ +P +++ + +I Sbjct: 117 VDIPSYNCKPKDIITIKDRQKSQSIITKNVNSFQKPKIPNHLTFDLIQFKGLVNQIIDR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWIYLKINELLVVEYYSR 193 >gi|67036094|gb|AAY62973.1| small ribosomal protein subunit 4 [Platylomella lescurii] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLXKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|18920757|gb|AAL82423.1| ribosomal protein system 4 [Myurella tenerrima] Length = 197 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKDQKKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|67035775|gb|AAY62818.1| small ribosomal protein subunit 4 [Hylocomiastrum pyrenaicum] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K K K + + ++ +P++++ + +I Sbjct: 117 NDYIVDIPSYRCKPQDFITIKNKRKSETIISKNIDFYQKYKIPDHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|328541152|gb|AEB21800.1| ribosomal protein S4 [Lepidozia cupressina] Length = 199 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 9/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV-N 124 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ + N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNIVDIPSYNCEPGDIITIRDKQKSRSIIAKNVNLFQNLKIPSHLTFDSIKLCGSINQ-- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 175 -TINREWINLKINELLVVEYYSR 196 >gi|108758664|ref|YP_631524.1| 30S ribosomal protein S4 [Myxococcus xanthus DK 1622] gi|122981072|sp|Q1D749|RS4A_MYXXD RecName: Full=30S ribosomal protein S4 A gi|108462544|gb|ABF87729.1| ribosomal protein S4 [Myxococcus xanthus DK 1622] Length = 208 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ +S +I RR ++ + K + R Y PG HGQ R K S +G+QLR Sbjct: 1 MARYTASACRICRRENLKMYLKGDRCYTDKCAIERRPYPPGQHGQGR-VKFSGYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR + A ++G T NL+ LE RLD +V+R F T ARQ Sbjct: 60 KQKVKRMYG-LLENQFRGYYHRASAAKGKTGDNLLQQLELRLDNVVFRMGFADTRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H VNGR VNI S+ K G +EV +KS+++ + EA + R +P++IS++ Sbjct: 119 LVRHGHFQVNGRKVNIPSFAVKPGTAVEVVEKSRKVLRISEALETVDRRGIPQWISLDKK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ +D+ P+ L+VE YS+ Sbjct: 179 AFKGTVTTVPNR-EDLTMPIS--EQLIVELYSK 208 >gi|28198376|ref|NP_778690.1| 30S ribosomal protein S4 [Xylella fastidiosa Temecula1] gi|182681017|ref|YP_001829177.1| 30S ribosomal protein S4 [Xylella fastidiosa M23] gi|32129992|sp|Q87E60|RS4_XYLFT RecName: Full=30S ribosomal protein S4 gi|226703311|sp|B2I8J2|RS4_XYLF2 RecName: Full=30S ribosomal protein S4 gi|28056446|gb|AAO28339.1| 30S ribosomal protein S4 [Xylella fastidiosa Temecula1] gi|182631127|gb|ACB91903.1| ribosomal protein S4 [Xylella fastidiosa M23] Length = 208 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + R PG HG RKSK S + QLR Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQR---PGQHGAVRKSKLSDYASQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K A +G+T NL+ LE+RLD ++YR F T AAR Sbjct: 58 EKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVN 171 Q V+HR VLVNG+ VN+ SY K GDV+ + Q++++ V E+ + ++ +I V+ Sbjct: 117 QLVSHRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKYLCVQESLTIKDQHGSAFSWIEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P P + L+VE YS+ Sbjct: 177 SEKFSGVFKALPDRAD---LPSDINEALIVELYSK 208 >gi|307823465|ref|ZP_07653694.1| ribosomal protein S4 [Methylobacter tundripaludum SV96] gi|307735450|gb|EFO06298.1| ribosomal protein S4 [Methylobacter tundripaludum SV96] Length = 206 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 123/214 (57%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L+ + K ++ R PG HG ++++ S + +QLR Sbjct: 1 MARYLGPTCKLSRREGTDLFLKSRGKSLENKCKLDQR---PGQHG-TKRARSSDYAIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 AKQ++++ YG I EK+FR+ +K AD +G T NL++ LESRLD +VYR F T AR Sbjct: 57 AKQRLRRIYG-ILEKQFRNYYKTADLKKGATGQNLLNLLESRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VN +N+ SY+ GDV+ V++K+K+ +++A + E+ P ++ VN Sbjct: 116 QLVSHKSIQVNNVLINVPSYQVSPGDVLTVREKAKKQQRIVDALVVTEQYGFPSWVEVNS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +M TF +P V + LVVE YS+ Sbjct: 176 KSMSGTFSSLPDR---VDLGSDINEQLVVELYSK 206 >gi|125662732|gb|ABN50316.1| small ribosomal protein 4 [Illicium verum] Length = 203 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 11/208 (5%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + K RR+G K P + G L Q R K S + ++L KQK++ + Sbjct: 2 SRYRGPRFKKIRRLGSLPGLTSKRPRS----GSDLRNQSRSGKRSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 58 YG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHT 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD--NMVAT 178 LVNGR V+I SYRCK D+I + + + A + + +++ ++P++++++ Sbjct: 117 LVNGRLVDIPSYRCKPRDIITTRDEHRSRALIQNSIDSSQKEELPKHLTLHSLQYQYKGL 176 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 177 VNQIIDSK---WVGLKINELLVVEYYSR 201 >gi|37548881|gb|AAO32709.1| ribosomal protein 4 [Polytrichum brachymitrium] Length = 194 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 CKIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 57 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|86608572|ref|YP_477334.1| 30S ribosomal protein S4 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502848|sp|Q2JMH0|RS4_SYNJB RecName: Full=30S ribosomal protein S4 gi|86557114|gb|ABD02071.1| ribosomal protein S4 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 203 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIG-ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR G +L G + + PG+HG RK K S + ++L KQK++ Sbjct: 1 MSRYTGPRLKIIRRFGGLDLPGLTRKRPKNTN-PPGMHGAERKKK-SEYAIRLEEKQKVR 58 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++ ++A RS+G T L+ LE RLD IV+R PTI AARQ V+H Sbjct: 59 FNYG-LSERQMIRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ V I SY CK GDVI VK K V ++ +P+Y+ + + + Sbjct: 118 HIEVNGQKVTIPSYGCKVGDVITVKNKESSRKLVAAYAEYPGLFLPDYLEFDKEKLRGRI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + + PV LVVEFYSR Sbjct: 178 KELPPR-EQICAPV--NELLVVEFYSR 201 >gi|67035710|gb|AAY62786.1| small ribosomal protein subunit 4 [Saelania glaucescens] Length = 194 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A V++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQAMVIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HESIGLKINELLVVEYYSR 192 >gi|118626125|emb|CAL41759.1| small ribosomal protein 4 [Mesoptychia sahlbergii] Length = 191 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKALKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I V+ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITVRNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGSVNQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|116493045|ref|YP_804780.1| 30S ribosomal protein S4 [Pediococcus pentosaceus ATCC 25745] gi|122265491|sp|Q03EN4|RS4_PEDPA RecName: Full=30S ribosomal protein S4 gi|116103195|gb|ABJ68338.1| SSU ribosomal protein S4P [Pediococcus pentosaceus ATCC 25745] Length = 202 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HGQ + K S +G+QLR KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLTGTGKE-LARRPYAPGDHGQNNRRKISEYGMQLREKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F ++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-LTERQFSNLFVRAGKIREGLPGTNFMVLLERRLDNMVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY + G VI V++KSK L + EA + A P+++ + D + + Sbjct: 119 HITVDGKRVDIPSYEVEIGQVIGVREKSKDLKIISEAVE-AVVGRPQFVQFDADKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + +L+VE+Y++ Sbjct: 178 VRLPQRDE---LEADIDDSLIVEYYNK 201 >gi|309322306|ref|YP_003934157.1| ribosomal protein S4 [Cedrus deodara] gi|228017102|gb|ACP51924.1| ribosomal protein S4 [Cedrus deodara] gi|307683232|dbj|BAJ19540.1| ribosomal protein S4 [Cedrus deodara] Length = 201 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P Y + K S + ++ KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKALPGLTSKRP----KYRNDSINRSSSRKISQYRIRPEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + + + + L +R +P +++ N Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRSIIKKNIDLFQRDKLPNHLTFNSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|67035919|gb|AAY62886.1| small ribosomal protein subunit 4 [Callialaria curvicaulis] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGPTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K K K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNKLKSETIISKNMEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035795|gb|AAY62828.1| small ribosomal protein subunit 4 [Regmatodon declinatus] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDSIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|222103494|gb|ACM44276.1| small ribosomal protein subunit 4 [Entodon flavescens] Length = 203 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKTPQLKSSST---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSENIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|24473804|gb|AAL82745.1| small ribosomal subunit protein 4 [Leptostomum menziesii] Length = 196 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +V+R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 IVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLKKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|157689510|gb|ABV65311.1| ribosomal protein S4 [Leea guineensis] Length = 193 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G KSP G L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKSP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLNYVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I + + K A + + ++P++++++ +I S Sbjct: 116 DIPSYRCKPRDIITARDEQKSRALIQNFLDSSSHEELPKHLTLHPFQFKGVVNQIIDSN- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WVGLKINELLVVEYYSR 191 >gi|22091487|emb|CAC86576.1| small ribosomal protein S4 [Cyathophorella tonkinensis] Length = 197 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMSPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY+CK D I +K + K A + + + ++ +P +++ N +I Sbjct: 117 SIVDIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|6002045|emb|CAA58932.1| ribosomal protein S4 [Dioscorea polystachya] Length = 196 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GSDFKNQSRFGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LTEQQLLRYIHIAGKAKGSTDQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + + + + + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRDIITTKDKQRSKVLIQNSIESSPHEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---LIGLKINELLVVEY 196 >gi|63191732|gb|AAY34826.1| small ribosomal protein subunit 4 [Braunia secunda] Length = 198 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRI-RRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 56 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 57 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 115 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 116 NDRIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKSKIPNHLTYNSLKKKGLVNQI 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 ---LDRELIGLKINELLVVEYYSR 196 >gi|328541050|gb|AEB21749.1| ribosomal protein S4 [Chloranthelia berggrenii] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINRESIDLKINELLVVEYYSR 197 >gi|42556442|gb|AAS19816.1| small ribosomal protein 4 [Lepicolea ochroleuca] Length = 191 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKPKSSYI---DRPTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRNKQKSQSIITKNINLFQNLKIPSHLTFDSTKLCGSITQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ITLKINELLVVEYYSR 189 >gi|257866598|ref|ZP_05646251.1| ribosomal protein S4 [Enterococcus casseliflavus EC30] gi|257872886|ref|ZP_05652539.1| ribosomal protein S4 [Enterococcus casseliflavus EC10] gi|257876202|ref|ZP_05655855.1| ribosomal protein S4 [Enterococcus casseliflavus EC20] gi|325567299|ref|ZP_08143966.1| 30S ribosomal protein S4 [Enterococcus casseliflavus ATCC 12755] gi|257800556|gb|EEV29584.1| ribosomal protein S4 [Enterococcus casseliflavus EC30] gi|257807050|gb|EEV35872.1| ribosomal protein S4 [Enterococcus casseliflavus EC10] gi|257810368|gb|EEV39188.1| ribosomal protein S4 [Enterococcus casseliflavus EC20] gi|325158732|gb|EGC70878.1| 30S ribosomal protein S4 [Enterococcus casseliflavus ATCC 12755] Length = 203 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 115/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSETGKE-LARRPYAPGQHGPNSRGKKSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HVLV+G+ V+I SY + G VI V++KS+ ++++ EA + A ++S + + + + Sbjct: 119 HVLVDGKRVDIPSYHVEVGQVISVREKSQNISTIKEAVE-ATAGRASFVSFDSEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P + + LVVEFY Sbjct: 178 TRLPERDE---LSAEVDEALVVEFY 199 >gi|222103504|gb|ACM44281.1| small ribosomal protein subunit 4 [Amblystegium serpens] Length = 203 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|24473838|gb|AAL82763.1| small ribosomal subunit protein 4 [Bryum funckii] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|62079663|gb|AAX61177.1| small ribosomal protein 4 [Makinoa crispata] Length = 196 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K P + G Q K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTNKIPKSK----SGFTNQASNKKLSQYRIRLEEKQKLRFHYG-L 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ A R++G T L+ LE RLD I++R PTI +ARQ VNHRH+LVN Sbjct: 56 TERQLLKYVCIARRAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPSARQLVNHRHILVNN 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ +VI ++ K + +++ L++R VP ++ + + ++ Sbjct: 116 YPVDIPSYNCEPENVISIRDPKKSRSIIIKNIDLSQRAKVPNHLIFDSTQFRGSVNQMID 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + L+VE+YSR Sbjct: 176 RD---WINLKINELLIVEYYSR 194 >gi|37548855|gb|AAO32696.1| ribosomal protein 4 [Pogonatum cirratum] Length = 198 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 5 CKIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITER 60 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN V Sbjct: 61 QLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIV 120 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 I SYRCK D I +K + + A + + +++ +P +++ N + +I L Sbjct: 121 TIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLDKKGLVNQI---LD 177 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 178 RESIGLKINELLVVEYYSR 196 >gi|92112578|ref|YP_572506.1| SSU ribosomal protein S4P [Chromohalobacter salexigens DSM 3043] gi|122420778|sp|Q1R0F1|RS4_CHRSD RecName: Full=30S ribosomal protein S4 gi|91795668|gb|ABE57807.1| SSU ribosomal protein S4P [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 84/211 (39%), Positives = 123/211 (58%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +P + PG+HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGATGELLLQLLESRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNGR+VN+ SY+ K GDV+ V++K+K A + A + A R +I V+ M Sbjct: 119 SHKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQNALGIAANRGDVAWIDVDSKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + NL+VE YS+ Sbjct: 179 EGTFKAVPERGD---LSADINENLIVELYSK 206 >gi|294055197|ref|YP_003548855.1| ribosomal protein S4 [Coraliomargarita akajimensis DSM 45221] gi|293614530|gb|ADE54685.1| ribosomal protein S4 [Coraliomargarita akajimensis DSM 45221] Length = 202 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 120/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I+RR G+ ++ P + + PG HG R + K S + + L KQK++ Sbjct: 1 MARYTGPTTRINRRFGQAIFA-PTKAFERKPHPPGQHGPRLRRKLSDYAIGLNEKQKLRF 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+FR F++A RG T + LE RLD++VYR F + AARQFV+H H Sbjct: 60 MYG-MTEKQFRLTFEKAKNQRGVTGEIFLQMLECRLDSVVYRLGFAKSRSAARQFVSHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 V VNG+ +I S+ KEGD IEV++++ + + R VPE++++N D++ AT Sbjct: 119 VCVNGKKTDIASFMVKEGDEIEVRERTSSRQLATRGMEESTARTVPEWVTLNSDSLKATV 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+PS+ + + L+VE+YSR Sbjct: 179 NRLPSNEETE---AGINVQLIVEYYSR 202 >gi|37992557|gb|AAR06457.1| small ribosomal protein 4 [Hookeria lucens] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGVLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ V Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIGV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A + + + ++ P +++ + RI Sbjct: 117 NDCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKFKRPNHLTYSSLEKKGLVNRI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|157689544|gb|ABV65328.1| ribosomal protein S4 [Qualea parviflora] Length = 194 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGCI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I + K A V + +VP++++++ +I S Sbjct: 116 VDIPSYRCKPRDIITARDDQKSRAMVQNYLDSSPHEEVPKHLTIHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|328541108|gb|AEB21778.1| ribosomal protein S4 [Bazzania yoshinagana] Length = 195 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 RQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|314982287|gb|EFT26380.1| ribosomal protein S4 [Propionibacterium acnes HL110PA3] Length = 201 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRGR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++G T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQKVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|67036042|gb|AAY62947.1| small ribosomal protein subunit 4 [Okamuraea hakoniensis] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGILPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|162415076|gb|ABX89112.1| ribosomal protein S4 [Syntrichia princeps] Length = 202 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 4 YRGPRVRIIRRLGTLPGLSNKIPHLKSSST---NQSTSNKKISQYRIRLEEKQKLRFHYG 60 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 61 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 119 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 120 NNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLINQI 179 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 ---LDQESIGLKINELLVVEYYSR 200 >gi|222103530|gb|ACM44294.1| small ribosomal protein subunit 4 [Plagiothecium platyphyllum] Length = 198 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|94987423|ref|YP_595356.1| 30S ribosomal protein S4 [Lawsonia intracellularis PHE/MN1-00] gi|152060957|sp|Q1MPP2|RS4_LAWIP RecName: Full=30S ribosomal protein S4 gi|94731672|emb|CAJ55035.1| ribosomal protein S4 [Lawsonia intracellularis PHE/MN1-00] Length = 208 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K +K ++ RR G L+ + K + R Y PG HG+ RK K S + +QLR Sbjct: 1 MAKYNDAKCRLCRREGTKLFLKGDRCFTDKCAYDRRPYAPGQHGRVRK-KMSDYAIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FR F AD ++G T NL+S+LE RLD +VYR + ARQ Sbjct: 60 KQKVRRVYG-VLEKQFREYFVHADMAKGITGVNLLSYLERRLDNVVYRLGLANSRVQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 + H +NG V I S + GD IEV +K+++++ V +A + R P ++ ++ Sbjct: 119 LIRHGIFTLNGHKVTIPSLQVNVGDSIEVPEKNRKISVVADAQSIVGRRGCPSWLELDAS 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P +D+ +P + +L+VE YS+ Sbjct: 179 TFKGVVKALPQR-EDIQFP--INEHLIVELYSK 208 >gi|11121109|emb|CAC14741.1| ribosomal protein subunit 4 [Bryum billardierei] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALTGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|12642246|gb|AAK00205.1| rps4 [Lorentziella imbricata] Length = 195 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN V Sbjct: 58 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMALTIPEARQLVNHRHILVNDCIV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ VP +++ N +I L Sbjct: 118 DIPSYRCKPQDFITMKDRQKSQAMITKNIDFFQKSKVPNHLTFNSLQKKGLVNQI---LD 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 RESIGLKINELLVVEYYSR 193 >gi|254426804|ref|ZP_05040511.1| ribosomal protein S4 [Alcanivorax sp. DG881] gi|196192973|gb|EDX87932.1| ribosomal protein S4 [Alcanivorax sp. DG881] Length = 210 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 12/214 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLH---GQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + P+ ++ PG RR ++ S +G+QLR Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGIRPLESKCKAEQAPGQAAGASGRRPARLSDYGVQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FRS +K+A S+G T L+ LE RLD +VYR F T AR Sbjct: 61 EKQKVRRTYG-VLEKQFRSYYKKAAASKGATGEVLLQLLEGRLDNVVYRMGFGSTRSEAR 119 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+HR +LVNG+SVN+ SY+ K GD I V++KSK V A +LA +R +I V+ Sbjct: 120 QLVSHRAILVNGQSVNVASYQVKPGDQINVREKSKNQLRVKNAMELAQQRGFMPWIEVDD 179 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T+ P + P + NL+VE YS+ Sbjct: 180 KKLEGTYKAKPER---IDLPAEINENLIVELYSK 210 >gi|77862549|gb|ABB04547.1| small ribosomal protein 4 [Plagiochasma rupestre] Length = 201 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S+ + KI RR+G K+ + Y + K S + ++L KQK++ + Sbjct: 1 SRYRGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFH 57 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 58 YG-LTERQLVKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLSMAPTIPGARQLVNHRHI 116 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 L+N ++I SY CK D I +K + K + + + ++ +P +++ + + Sbjct: 117 LINNNPIDIPSYNCKPKDTITIKDRPKSKSIITKNLNSFQKQKIPNHLTFDLMQVKGLVN 176 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 177 QIIDR---EWIYLKINELLVVEYYSR 199 >gi|71901055|ref|ZP_00683165.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] gi|71729182|gb|EAO31303.1| Ribosomal protein S4, bacterial and organelle form [Xylella fastidiosa Ann-1] Length = 208 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + R PG HG RKSK S + QLR Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQR---PGQHGAVRKSKLSDYASQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K A +G+T NL+ LE+RLD ++YR F T AAR Sbjct: 58 EKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVN 171 Q V+HR VLVNG+ VN+ SY K GDV+ + Q++++ V E+ + ++ +I V+ Sbjct: 117 QLVSHRSVLVNGKMVNLPSYHVKPGDVVALSQRAQKYLCVQESLTIKDQYGSAFSWIEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F +P P + L+VE YS+ Sbjct: 177 SEKFSGVFKALPDRAD---LPSDINEALIVELYSK 208 >gi|124003687|ref|ZP_01688535.1| ribosomal protein S4 [Microscilla marina ATCC 23134] gi|123990742|gb|EAY30209.1| ribosomal protein S4 [Microscilla marina ATCC 23134] Length = 200 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI R+ GE + G P + ++Y PG HG+ R+ K S + +QL+AKQK+K Sbjct: 1 MARYRGPKSKISRKFGEPIMG-PSKALQKKAYPPGQHGKGRRKKQSEYAIQLQAKQKVKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F ++F +A +G T NL+ FLE+RLD VYR PT AARQ V H+H Sbjct: 60 IYG-VLERQFANLFDKAAGKQGITGENLLKFLEARLDNTVYRLGIAPTRRAARQLVIHKH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG N+ SY K GD++ V++KSK L V E+ + ++ + M F+ Sbjct: 119 ITVNGEVANVPSYSLKPGDIVGVREKSKSLEVVTESLMSNSKRF-NWLEWDSTMMAGKFL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P + P +Q L+VE YS+ Sbjct: 178 SYPERDQ---IPEKVQEQLIVELYSK 200 >gi|67036098|gb|AAY62975.1| small ribosomal protein subunit 4 [Helodium blandowii] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRMARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|228017416|gb|ACP52233.1| ribosomal protein S4 [Larix occidentalis] Length = 201 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRP----KYRNDSINRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + + + L +R +P +++ N Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRTIIRKNIDLLQRDKLPNHLTFNSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WIGLKINELLVVEYYSR 199 >gi|11878079|gb|AAG40787.1| small ribosomal protein 4 [Buxbaumia aphylla] Length = 200 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKY 61 + + KI RR+G K P G Q K S + ++L KQK++ + Sbjct: 1 RYRGPRVKIIRRLGALPGLTNKIPQLK----SGYTNQSVSNKKISQYRIRLEEKQKLRFH 56 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + A ++G T L+ E RLD I++R PTI ARQ VNHRH+ Sbjct: 57 YG-ITERQLLKYVRIARGAKGSTGQILLQSSEMRLDNIIFRLGIAPTIPGARQLVNHRHI 115 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN VNI SYRCK D I +K K + + +L+++ +P +++ N Sbjct: 116 LVNNNIVNIPSYRCKPQDFITIKNSQKSQTIITKNIELSQKYKIPNHLTFNSLEKKGLVN 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 QI---LDRESIGLKINELLVVEYYSR 198 >gi|257870579|ref|ZP_05650232.1| ribosomal protein S4 [Enterococcus gallinarum EG2] gi|257804743|gb|EEV33565.1| ribosomal protein S4 [Enterococcus gallinarum EG2] Length = 203 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ KI RR+G +L K + R Y PG HG + K S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKISRRLGISLSETGKE-LARRPYAPGQHGPNSRGKKSEYGMQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFIKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY + G VI V++KS+ ++++ EA + ++S + + + + Sbjct: 119 HILVDGKRVDIPSYHVEVGQVISVREKSQNISTIKEAIEATTGRT-AFVSFDDEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P + + LVVEFY Sbjct: 178 TRLPERDE---LTAEVDEALVVEFY 199 >gi|37548887|gb|AAO32712.1| ribosomal protein 4 [Polytrichum subpilosum] Length = 194 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 CKIIRRLGAFPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 57 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|37548861|gb|AAO32699.1| ribosomal protein 4 [Pogonatum microstomum] Length = 195 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 2 CKIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 58 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGIAPTIPGARQLVNHKHILVNDRIV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 118 NIPSYRCKPQDFITIKNRQESQAIITKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 RESIGLKINELLVVEYYSR 193 >gi|6002073|emb|CAA58945.1| ribosomal protein S4 [Potamogeton crispus] Length = 196 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + G Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKRPRS----GNDPKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR VNI SYRCK D+I K + A V + R ++P++++V+ Sbjct: 116 ILVNGRIVNIPSYRCKPRDIITTKDNQRSKALVQNYIDSSSREELPQHLTVDSSQYKGFV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---SVGLKINELLVVEY 196 >gi|328541046|gb|AEB21747.1| ribosomal protein S4 [Hygrolembidium rigidum] gi|328541048|gb|AEB21748.1| ribosomal protein S4 [Hygrolembidium rigidum] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D ++R TI ARQ VNHRH+ + Sbjct: 58 -LTERQSLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L + +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGSIDQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINRESINLKINELLVVEYYSR 197 >gi|63145915|gb|AAY33895.1| small ribosomal protein 4 [Pallavicinia rubristipa] Length = 199 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K + SY L K S + ++L KQK++ +YG + Sbjct: 3 GPRAKIIRRLGALPGLSHKMLGSRSSYTNQLTAN---KKISQYRIRLEEKQKLRFHYG-L 58 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+N Sbjct: 59 TERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILINK 118 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPS 184 +VNI SY CK DVI ++ + + + + + L + + +P +++ + + +I Sbjct: 119 NTVNIPSYNCKPRDVITIRNRHESQSVITKNINLFQEQRIPNHLTFDSTRFCGSVNQIID 178 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 179 R---EWIGLKINELLVVEYYSR 197 >gi|3914850|sp|O20221|RR4_GLAPA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292884|emb|CAA92554.1| ribosomal protein S4 [Gladiolus papilio] Length = 197 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K K + A + AS + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKNKQRSKALIQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WIGLKINELLVVEYYSR 193 >gi|157737265|ref|YP_001489948.1| 30S ribosomal protein S4 [Arcobacter butzleri RM4018] gi|315636982|ref|ZP_07892206.1| 30S ribosomal protein S4 [Arcobacter butzleri JV22] gi|172045648|sp|A8ETK5|RS4_ARCB4 RecName: Full=30S ribosomal protein S4 gi|157699119|gb|ABV67279.1| 30S ribosomal protein S4 [Arcobacter butzleri RM4018] gi|315478812|gb|EFU69521.1| 30S ribosomal protein S4 [Arcobacter butzleri JV22] Length = 208 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 92/213 (43%), Positives = 130/213 (61%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+ +L + KS + R + PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLDADLGLKGERRLSGKSALEKRPFAPGQHGQRR-AKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K YG ISEK+FR+ FKEA R G+T LIS +E RLD +V+R F T ARQ Sbjct: 60 KQKVKFMYG-ISEKQFRNYFKEAVRREGNTGAILISLIEQRLDNVVFRMGFATTRANARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 F H HVLV+G+ V+I SY K G IE+K+KSK V+ A +L + + ++++V+ D Sbjct: 119 FTTHGHVLVDGKKVDIPSYLVKPGQKIEIKEKSKSNPQVVRALELTNQTGMVDWVNVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F RIP+ ++V PV + L+VE YS+ Sbjct: 179 KVFGIFTRIPAR-EEVVIPV--EERLIVELYSK 208 >gi|63101039|gb|AAY33144.1| small ribosomal protein 4 [Dendrocryphaea cuspidata] Length = 199 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCVVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|327449339|gb|EGE95993.1| ribosomal protein S4 [Propionibacterium acnes HL013PA2] Length = 201 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR+G +L G KS R Y PG+HG+ R +K S + LQLR KQK + Sbjct: 1 MARYTGPLTKKSRRLGTDLVGNDKS-FERRPYPPGVHGRGR-TKDSEYSLQLREKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR ++EADR++ T L+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 AYG-VLEKQFRRYYEEADRAQSKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 LVNG+ VNI SYR D+I+V++KSK L ++ A + E RDVP ++ V + Sbjct: 118 FLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + V + + +VE YS+ Sbjct: 178 HQLPTRDQIV---IDVNEQAIVELYSK 201 >gi|306450772|gb|ADM88645.1| small ribosomal protein 4 [Parisia laevipila] Length = 197 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKVSQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMTPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I VK + K A +++ +++ VP +++ +I Sbjct: 117 RIVNIPSYRCKPQDFITVKNRQKSQAMIIKNIDFSQKYKVPNHLTFGSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|157689468|gb|ABV65290.1| ribosomal protein S4 [Elaeocarpus angustifolius] Length = 195 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G G Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTSKRP----RIGSGFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGSTGRILLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K + K A + A ++P++++++ +I S Sbjct: 116 IVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSSAHEELPKHLTLHPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|46811020|gb|AAT01828.1| small ribosomal protein 4 [Isotachis multiceps] Length = 197 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTGKTLKQKSSYI---DRSTSTKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRVARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD I V+ + K + + + L +P +++ + + + Sbjct: 117 DIVDIPSYNCEPGDNITVRNRQKSQSIITKNINLFPNSKIPSHLTFDSMKLRGFVNQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINRELINLKINELLVVEYYSR 195 >gi|46486570|gb|AAS98721.1| ribosomal protein subunit 4 [Racopilum spectabile] Length = 200 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T + LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRFGVAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I +K + K A + ++ +P +++ + + Sbjct: 117 VNDRIVNIPSYRCKPQDFITIKDRQKSQAITSKDIDFYQKSKIPNHLTYSSLEKKGFVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRESIDLKINELLVVEYYSR 198 >gi|199597503|ref|ZP_03210932.1| Ribosomal protein S4 [Lactobacillus rhamnosus HN001] gi|199591526|gb|EDY99603.1| Ribosomal protein S4 [Lactobacillus rhamnosus HN001] Length = 203 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGNHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ ++I SY + G VI ++++S+ LA V EA + P Y++ + + + Sbjct: 119 HITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEAIENTVSR-PAYVTFDDNKKEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + P + +LVVE+Y Sbjct: 178 VRLPERGELEP---EVDESLVVEYY 199 >gi|24473816|gb|AAL82751.1| small ribosomal subunit protein 4 [Bryum pungens] Length = 199 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITTKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|313683416|ref|YP_004061154.1| SSU ribosomal protein s4p [Sulfuricurvum kujiense DSM 16994] gi|313156276|gb|ADR34954.1| SSU ribosomal protein S4P [Sulfuricurvum kujiense DSM 16994] Length = 208 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS ++ R YGPG HGQRR +K S +G QLR Sbjct: 1 MARYRGPVEKIERRFGVSLGLKGERRLAGKSALDKRPYGPGQHGQRR-TKISEYGTQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+ RS+F EA R G+T NL+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-LSEKQMRSLFGEAKRRTGNTGTNLVMLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH HVLV+G+ V+I SYR K G +E+ +KSK+ ++ A +L + + ++ ++ D Sbjct: 119 LVNHGHVLVDGKRVDIPSYRVKPGQKVEIHEKSKKNNQIVRAIELTNQTGLAAWVDIDQD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P ++V PV + L+VE YS+ Sbjct: 179 KAFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|222103510|gb|ACM44284.1| small ribosomal protein subunit 4 [Ptilium crista-castrensis] Length = 203 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + ++ ++P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSETIINRNIEFYQKSEIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|12642244|gb|AAK00204.1| rps4 [Lorentziella imbricata] Length = 194 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMALTIPEARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ VP +++ N +I L Sbjct: 117 DIPSYRCKPQDFITMKDRQKSQAMITKNIDFFQKSKVPNHLTFNSLQKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|332178480|gb|AEE14169.1| ribosomal protein S4 [Thermodesulfobium narugense DSM 14796] Length = 208 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 117/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ ++ RR G L+ + K + R PG+H R +K S +GL+LR Sbjct: 1 MSRYTGPVCRLCRREGMKLFLKGDRCLSEKCSFDKRPTPPGMHINTR-TKTSEYGLRLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQKMK++YG I E++FR + A++ G T NL LE RLD ++YR+ F + ARQ Sbjct: 60 KQKMKRFYGLIGERQFRRYVELAEKMGGVTGDNLYFLLERRLDNVLYRSGFASSRQEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 ++H H VN R V+I SY K GDVI V++ SK L S + ER +I V++D Sbjct: 120 MISHGHFNVNSRRVSIPSYSVKPGDVISVRENSKGLFSPEYVEVIKERTPAPWIYVDYDK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P + V ++ NL++EFYSR Sbjct: 180 LEIKFDRLPQREE---LDVPIRENLIIEFYSR 208 >gi|63191745|gb|AAY34832.1| small ribosomal protein subunit 4 [Goniobryum subbasilare] Length = 198 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 DRIVDIPSYRCKPQDFITIKDQQKYQTIISKNIYFYQKYKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|95930497|ref|ZP_01313233.1| RNA-binding S4 [Desulfuromonas acetoxidans DSM 684] gi|95133537|gb|EAT15200.1| RNA-binding S4 [Desulfuromonas acetoxidans DSM 684] Length = 206 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 6/209 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK--SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 M+K ++K KI RR+G N++G PK + R PG HG R+ KPS + QL KQK+ Sbjct: 1 MAKNFTAKGKIVRRLGVNIYGNPKYDRLLERRPTPPGEHGAGRRGKPSDYSRQLTEKQKV 60 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 + YG +SEK+FR +F +A +G T HN++ LE RLD +V+R T AR FV H Sbjct: 61 RFCYG-LSEKQFRRVFDKAKAMKGVTGHNMLVLLERRLDNMVFRLGLASTRSEARLFVRH 119 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVA 177 H LVNGR V+I SY + GDVIEV++KS+++ + EA R +P ++ + D Sbjct: 120 GHFLVNGRKVDIPSYLVRAGDVIEVREKSRKIGKISEALDSVMRRGIPSWLELERDAFKG 179 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ +++ PV + L+VE YS+ Sbjct: 180 TVKSLPAR-EELTTPV-FEEQLIVELYSK 206 >gi|328541160|gb|AEB21804.1| ribosomal protein S4 [Lepidozia sp. 1 von Konrat 6/20-4] Length = 198 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGIASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPGDIITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSTKLRGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINRELINLKINELLVVEYYSR 195 >gi|116010507|emb|CAL37360.1| ribosomal protein S4 [Fraxinus excelsior] Length = 194 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + L+ ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIIMTKDEQKSRTLIQNSLDLSPHEELPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|49182684|gb|AAT57804.1| small ribosomal protein [Calypogeia muelleriana] Length = 195 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKVLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A R +G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARRVKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I V++K K + + + + ++ +P ++S + + + ++ Sbjct: 117 VDIPSYNCEPGDIITVREKQKSQSIITKNINVFQKLKIPSHLSFDPTELRGFVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWIDLKINELLVVEYYSR 193 >gi|12642218|gb|AAK00191.1| rps4 [Encalypta armata] Length = 195 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD IV+R TI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMASTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ +++ VP ++S + +I L Sbjct: 117 VNIPSYRCKPQDFISIKDRQKSQAIIIKNIDFSQKSKVPNHLSFDSLQKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|17025839|gb|AAL32085.1| ribosomal protein 4 [Mitthyridium sp. Streimann 40876] Length = 201 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K P + + K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 59 G-LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN VNI SY+CK D I +K + K +++ ++ + + P +++ N + Sbjct: 118 VNNNMVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKHKTPTHLTFNSVEKKGLVNQ 177 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 178 I---LDQESIGLKINELLVVEYYSR 199 >gi|75764761|ref|ZP_00744159.1| SSU ribosomal protein S4P [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487751|gb|EAO51569.1| SSU ribosomal protein S4P [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 212 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 3/187 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K+ RR+G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MARYTGPAWKLSRRLGISLSGTGKE-LEKRPYAPGPHGPNQRKKLSEYGLQLQEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++FR F +A + G N + LE+RLD +VYR T AARQ VNH H Sbjct: 60 MYG-MTERQFRRTFDQAGKMPGKHGENFMILLEARLDNLVYRMGLARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++V+G V+I SYR K I V++KS L V EA ++ VPEY++ + D + AT+ Sbjct: 119 IMVDGARVDIPSYRVKPNQTISVREKSNSLVVVKEAIEV-NNFVPEYLTFDADKLEATYT 177 Query: 181 RIPSSLK 187 R + Sbjct: 178 RHAERAE 184 >gi|63145908|gb|AAY33892.1| small ribosomal protein 4 [Jensenia spinosa] Length = 199 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G L G + +RS G Q K S + ++L KQK++ +YG Sbjct: 3 GPRAKIIRRLGA-LPGLSHKMLGSRS---GYTNQLTANKKISQYRIRLEEKQKLRFHYG- 57 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+N Sbjct: 58 LTERQLLKYVRIARGAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILIN 117 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIP 183 VNI SY CK DVI +K + + + + + L E+ +P +++ + + +I Sbjct: 118 DDIVNIPSYNCKPRDVITIKNRRESQSVITKNINLLREQRIPNHLTFDSTRFCGSVNQII 177 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 178 DR---EWISLKINELLVVEYYSR 197 >gi|157689538|gb|ABV65325.1| ribosomal protein S4 [Phyllanthus calycinus] Length = 195 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGTLPGLTSKKP----RAGSDLRNQSRFGKKSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNH+H+LVNGR Sbjct: 56 ERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHKHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K + K A + + ++++P +++++ + +I S Sbjct: 116 IVDIPSYRCKPRDIITAKNEQKSRAMIQNYLDSSPQQELPNHLTLHSIHYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|49182720|gb|AAT57822.1| small ribosomal protein [Herbertus sakurai] gi|49182722|gb|AAT57823.1| small ribosomal protein [Herbertus subdentatus] Length = 195 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I +K K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYNCQLGDIITIKNKQKSQSIITKNINLFQKLKIPSHLTFDSTKLRGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|6002059|emb|CAA58937.1| ribosomal protein S4 [Laurus nobilis] Length = 196 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K R +G K P + G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRCLGALPGLTSKRPRS----GSDLRNQSRFGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + + A + + R+ + ++++ + Sbjct: 116 ILVNGRVVDIPSYRCKPRDIITARDEQRSRALIQNYLDSSPREDLAKHLTFDSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I + + LVVE+ Sbjct: 176 NQIIDIK---WIGLKINELLVVEY 196 >gi|49182663|gb|AAT57794.1| small ribosomal protein [Acromastigum exile] Length = 195 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 RQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCKPGDIITIRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|66866241|gb|AAY57789.1| small ribosomal protein 4 [Antitrichia californica] Length = 207 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 13/210 (6%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTFNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMV 176 VN V+I SYRCK D I +K + K A + + ++ +P +++ + Sbjct: 119 VNNCIVDIASYRCKPQDFITIKDRQKSQAIIXXXXXXKNIDFYQKYKIPNHLTYSSLEKK 178 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 179 GLVNQI---LDRESIGLKINELLVVEYYSR 205 >gi|67035869|gb|AAY62861.1| small ribosomal protein subunit 4 [Mastopoma subfiliferum] Length = 199 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLESSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNIIFRLGMAPTIPEARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCIVNIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63191851|gb|AAY34885.1| small ribosomal protein subunit 4 [Tuerckheimia valeriana] Length = 199 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVYFSQKYKIPNHLTFNSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|255530540|ref|YP_003090912.1| 30S ribosomal protein S4 [Pedobacter heparinus DSM 2366] gi|255343524|gb|ACU02850.1| ribosomal protein S4 [Pedobacter heparinus DSM 2366] Length = 202 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI R+ E ++G K ++ ++Y PG HG +R+ K S + +QL KQK+K Sbjct: 1 MARYTGPKSKIARKFREPIFGPDKV-LDRKNYPPGQHGASKRRGKQSEYAVQLMEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR++F +A G T NL+ LE+RLD VYR T AARQ V+H+ Sbjct: 60 YTYG-VLERQFRNLFTKASSRGGITGDNLLQLLEARLDNTVYRLGIATTRSAARQLVSHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 HV VNG VNI SY+ K GDVI V+QKSK L ++ + + ++ N + F Sbjct: 119 HVTVNGEVVNIPSYQLKAGDVIAVRQKSKTLEAITNSVAGRVINKFNWLDWNASELSGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ + P ++ NL+VE YS+ Sbjct: 179 LAYPNRDE---IPENIKENLIVELYSK 202 >gi|290487082|gb|ADD29925.1| ribosomal protein S4 [Ximenia americana] Length = 201 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRPRAR----SDLRNQSRSGKRSQYRIRLEEKQKLRL 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++F + +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQFLKYVRITGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I + + K A + + +++P+++++ Sbjct: 116 ILVNGRVVDIPSYRCKPRDIITARDEQKSKALIQNYLDSSPHKELPKHLALRAFQYKGFV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LV+E+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVIEYYSR 199 >gi|118626023|emb|CAL39328.1| small ribosomal protein 4 [Tetralophozia setiformis] Length = 191 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|67035895|gb|AAY62874.1| small ribosomal protein subunit 4 [Amblystegium serpens] Length = 199 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDSIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|49182766|gb|AAT57845.1| small ribosomal protein [Neotrichocolea bissetii] gi|49182809|gb|AAT57866.1| small ribosomal protein [Temnoma pulchellum] Length = 195 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKILKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N + Sbjct: 57 RQLLKYVCIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SY C+ GD+I ++ K K + + L ++ +P +++ + + + ++ Sbjct: 117 VNIPSYNCEPGDIITIRNKEKSQSIITRNINLFQKLKIPNHLTFDSTQLRGSVNQMIHR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWIHLKINELLVVEYYSR 193 >gi|47606928|gb|AAT36384.1| ribosomal protein subunit 4 [Pyrrhobryum latifolium] Length = 199 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNRKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMALTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKDREKYQTIISKNIDFYQKYKIPNHLTYNFLEKKGVVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESISLKINELLVVEYYSR 197 >gi|63101001|gb|AAY33125.1| small ribosomal protein 4 [Conardia compacta] Length = 199 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGT-LPGLTNKTHQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYSKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|222103548|gb|ACM44303.1| small ribosomal protein subunit 4 [Ptilium crista-castrensis] Length = 202 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS + +I RR+G K+P S + K S + ++L KQK++ Sbjct: 1 MSPLRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVN V+I SYRCK D I +K + K + + ++ ++P +++ + Sbjct: 117 ILVNDCIVDIPSYRCKPQDFITIKNQRKSETIINRNIEFYQKSEIPNHLTYSSLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NQI---LDRESIGLKINELLVVEYYSR 200 >gi|26399543|sp|Q9S0Q9|RS4_SHEVI RecName: Full=30S ribosomal protein S4 gi|5913931|dbj|BAA84524.1| ribosomal protein S4 [Shewanella violacea] Length = 206 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + T PG HG RK++ S +G+QLR Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDSKCKLET---PPGRHG-ARKTRLSEYGVQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + EK+FR+ +K+A R +G+T NL++ LE+RLD +VYR F T +R Sbjct: 57 EKQKVRRIYG-VLEKQFRNYYKDAARQKGNTGENLLTLLETRLDNVVYRMGFGATRAESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVNG VNI S++ DVI +++KSK+ A + + ++A +R+ P ++ V++ Sbjct: 116 QLVSHKSILVNGSVVNIPSFKVSASDVISIREKSKKQARISASLEVASQREKPTWVEVDN 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R+P + L+VE S+ Sbjct: 176 TKMEGAFKRLPER---SDLSAEINEQLIVELCSK 206 >gi|29422383|gb|AAO84587.1| small ribosomal protein 4 [Plagiopus oederianus] Length = 199 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRXHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 NDRMVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + LVVE+YSR Sbjct: 177 ---LDRESIGLKTNELLVVEYYSR 197 >gi|3098212|gb|AAC15554.1| small ribosomal protein 4 [Aulacomnium turgidum] Length = 199 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S K S + ++L KQK++ +YG Sbjct: 1 YRGLRVRIIRRLGALPGLTTKTPQLKSSSI---DQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + L ++ +P +++ + +I Sbjct: 117 NDHIVDIPSYRCKPQDFITIKDRQKSEAIINKNIDLYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|116010491|emb|CAL37352.1| ribosomal protein S4 [Vincetoxicum nigrum] Length = 194 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 70/200 (35%), Positives = 106/200 (53%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RLKKIRRLGALPGLTNKRP----RAGNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI AARQFVNHRH+LVNG Sbjct: 56 RQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQFVNHRHILVNGHI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK GD+I VK + K A + ++ + +++P ++ + +I S Sbjct: 116 VDIPSYRCKPGDIITVKDEQKSKALIQKSLDSSSHQELPSHLILQSFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|42556458|gb|AAS19824.1| small ribosomal protein 4 [Mastigophora woodsii] gi|118626065|emb|CAL39337.1| small ribosomal protein 4 [Mastigophora woodsii] Length = 191 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTEQQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I +K K K + + + L ++ +P +++ + + + +I + Sbjct: 117 SYNCEPGDIITIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGSINQIINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IHLKINELLVVEYYSR 189 >gi|86606184|ref|YP_474947.1| 30S ribosomal protein S4 [Synechococcus sp. JA-3-3Ab] gi|123506364|sp|Q2JUD6|RS4_SYNJA RecName: Full=30S ribosomal protein S4 gi|86554726|gb|ABC99684.1| ribosomal protein S4 [Synechococcus sp. JA-3-3Ab] Length = 203 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIG-ENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMK 59 MS+ + KI RR G +L G + + PG+HG RK K S + ++L KQK++ Sbjct: 1 MSRYTGPRLKIIRRFGGLDLPGLTRKRPKNTN-PPGMHGAERKKK-SEYAIRLEEKQKVR 58 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG +SE++ ++A RS+G T L+ LE RLD IV+R PTI AARQ V+H Sbjct: 59 LNYG-VSERQMLRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHG 117 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNGR V I SY CK GDVI V+ K V ++ +P+Y+ + + + Sbjct: 118 HIEVNGRKVTIPSYGCKVGDVITVRNKESSRKLVAAYAEYPGLFLPDYLEFDKEKLRGRI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + LVVEFYSR Sbjct: 178 KELPPR---EQICAPVNELLVVEFYSR 201 >gi|296272961|ref|YP_003655592.1| 30S ribosomal protein S4 [Arcobacter nitrofigilis DSM 7299] gi|296097135|gb|ADG93085.1| ribosomal protein S4 [Arcobacter nitrofigilis DSM 7299] Length = 208 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+ +L + KS + R + PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLDADLGLKGERRLNGKSALEKRPFAPGQHGQRR-TKLSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR FKEA R G+T NLI+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRKYFKEAARREGNTGSNLITLIEQRLDNVVYRMGFATTRANARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 F H H+LV+G+ V+I S+ K G IE+K+KSK ++ A +L + + E++ V+ D Sbjct: 119 FTTHGHILVDGQKVDIPSFVVKPGQKIEIKEKSKTNPQIVRALELTNQTGMVEWVDVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP+ ++V PV + L+VE YS+ Sbjct: 179 KAFGIFTRIPTR-EEVVIPV--EERLIVELYSK 208 >gi|222103486|gb|ACM44272.1| small ribosomal protein subunit 4 [Anomodon minor] Length = 197 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|18568422|gb|AAL76080.1| ribosomal protein system 4 [Hypnum cupressiforme] Length = 198 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L+N Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILIN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|62288945|sp|P69651|RR4_SISSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|62288946|sp|P69652|RR4_SISST RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293074|emb|CAA92560.1| ribosomal protein S4 [Sisyrinchium sp. 'Lejeune 1997'] gi|2293081|emb|CAA92561.1| ribosomal protein S4 [Sisyrinchium striatum] Length = 194 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K K + A + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKDKQRSKALIQNSIASSPHEELPNHLTIDLFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|56480311|ref|NP_709084.2| 30S ribosomal protein S4 [Shigella flexneri 2a str. 301] gi|56383862|gb|AAN44791.2| 30S ribosomal subunit protein S4 [Shigella flexneri 2a str. 301] Length = 202 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 16/210 (7%) Query: 5 ESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQK 57 K K+ RR G +L+ + K + PG HG RK + S +G+QLR KQK Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLREKQK 56 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+ Sbjct: 57 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 115 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMV 176 H+ ++V GR VNI SY+ DV+ +++K+K+ + V A +LA +R+ P ++ V+ M Sbjct: 116 HKAIMVPGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 175 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P + +L+VE YS+ Sbjct: 176 GTFKRKPER---SDLSADINEHLIVELYSK 202 >gi|46486558|gb|AAS98715.1| ribosomal protein subunit 4 [Bescherellia elegantissima] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + ++ +P +++ + +I Sbjct: 117 NCIVDIASYRCKPQDFITIKDRQKSQAIINKNIDFYQKYKIPNHLTYSSLEKKGFVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|17025855|gb|AAL32093.1| ribosomal protein 4 [Mitthyridium sp. Wall 3864] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ ++ + + P +++ N +I Sbjct: 117 NNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKHKTPNHLTFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|24473822|gb|AAL82754.1| small ribosomal subunit protein 4 [Brachymenium niveum] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 DRIVNIPSYRCKPEDSITIKDRQKSQAIISKNINLYQKYKTPNHLTYNFLKKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|116010497|emb|CAL37355.1| ribosomal protein S4 [Scrophularia vernalis] Length = 194 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + +VP +++++ +I S Sbjct: 116 VDIPSYRCKPRDIIMAKDEQKSRTLIQNSLNSSPHEEVPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|17025864|gb|AAL32097.1| ribosomal protein 4 [Mitthyridium sp. Wall 2620] Length = 201 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K P + + K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 59 G-LTERQLLNYVRIARKVKGSTGQILLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN VNI SY+CK D I +K + K +++ ++ + + P +++ N + Sbjct: 118 VNNSIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKHKTPNHLTFNSVEKKGLVNQ 177 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 178 I---LDQESIGLKINELLVVEYYSR 199 >gi|67035634|gb|AAY62748.1| small ribosomal protein subunit 4 [Leucoloma sprengelianum] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGT-LPGLTNKIPELKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGIASTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K +++ + +++ VP +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDPQNFQDMIIKNADFSQKSKVPNHLTFNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|48527383|gb|AAT45824.1| small ribosomal protein 4 [Plagiochila integerrima] Length = 195 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLGALAGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD + R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTILRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I + K K + V + +R +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCEPGDIITIGNKKKSQSIVTKNINSFQRLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVV 201 ++ + + + LVV Sbjct: 177 NQMINR---EWINLKINELLVV 195 >gi|67035986|gb|AAY62919.1| small ribosomal protein subunit 4 [Meteoriopsis reclinata] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSETIIGKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|29422393|gb|AAO84592.1| small ribosomal protein 4 [Breutelia affinis] Length = 197 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K P S + K + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKXPQLKSSSI---NQSTSNKKIXQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 RIVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLXINELLVVEYYSR 195 >gi|49182750|gb|AAT57837.1| small ribosomal protein [marchantiophyte contaminant] Length = 195 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKPKSSYI---DRSISNKKVSQYRVRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINSDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K V + L ++ +P +++++ + + ++ Sbjct: 117 VDIPSYNCEPGDIITVKTKQKSQLIVTKNINLFQKLKIPSHLTLDSTELRGFVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWIDLKINELLVVEYYSR 193 >gi|145848875|emb|CAJ91114.1| ribosomal protein S4 [Acrocladium chlamydophyllum] Length = 196 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 IVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|18568424|gb|AAL76081.1| ribosomal protein system 4 [Stereophyllum radiculosum] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKFEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|63100979|gb|AAY33114.1| small ribosomal protein 4 [Herzogiella adscendens] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLR----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN VBI SYRCK D I +K + K + + + ++ P +++ + + Sbjct: 116 VNDCIVBIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKXPNHLTYSSLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|222103484|gb|ACM44271.1| small ribosomal protein subunit 4 [Leucodon pendulus] Length = 197 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + ++ RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRVIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|42556400|gb|AAS19795.1| small ribosomal protein 4 [Blepharostoma trichophyllum] Length = 191 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTGKILKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINTDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I V+ K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITVRNKQKSQSLITKNINLFQKLKIPSHLTFDSTKLQGSINQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLNINELLVVEYYSR 189 >gi|63100999|gb|AAY33124.1| small ribosomal protein 4 [Tomentypnum falcifolium] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|3914840|sp|O19992|RR4_BOBGL RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292744|emb|CAA92565.1| ribosomal protein S4 [Bobartia gladiata] Length = 194 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ V HRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVTHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE-ASQLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K K + A + + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKDKQRSKALIQDYTASSPHEELPNHLTIDPIQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|307828394|gb|ADN94995.1| small ribosomal protein 4 [Fossombronia wattsii] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K+ RR+G + Y L K S + ++L KQK++ +YG Sbjct: 1 RGPRAKMIRRLGVLPGLTDRIIEPKSGYTSQL---VSNKKMSQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV+ Sbjct: 57 LTERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVD 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 +VNI SY CK GDVI V+ + K + + ++ L ++ P +++++ + + ++ Sbjct: 117 DDTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKPKTPNHLTLDSTRLRGSINQMI 176 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 DRD---WINLKINELLVVEYYSR 196 >gi|295136909|ref|YP_003587741.1| ribosomal protein S4 [Lathyrus sativus] gi|293338631|gb|ADE43603.1| ribosomal protein S4 [Lathyrus sativus] Length = 201 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K R + SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTRKELPVRRVGS----EESLSSKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K + K + + + A R VP +++++ D Sbjct: 116 VLVNGRIVDIPSYRCKPKDIITAKDEQKSRTIIQNSLKSAPRKRVPTHLTLHPDQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|49182752|gb|AAT57838.1| small ribosomal protein [Nardia insecta] gi|49182764|gb|AAT57844.1| small ribosomal protein [Nardia scalaris] Length = 195 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ VN Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGSVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|18920753|gb|AAL82421.1| ribosomal protein system 4 [Myurella acuminata] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQKKSEAIISKNIESYQKYKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|67036014|gb|AAY62933.1| small ribosomal protein subunit 4 [Neodolichomitra yunnanensis] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + + +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNMEFHPKYKIPNHLTYSFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63191777|gb|AAY34848.1| small ribosomal protein subunit 4 [Psilopilum cavifolium] Length = 195 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPXLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R Sbjct: 57 RQLLNYVRIAGRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQESQAIITRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|222103462|gb|ACM44260.1| small ribosomal protein subunit 4 [Haplocladium microphyllum] Length = 203 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 6 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 61 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 62 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVN 121 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 122 DCIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYNSLEKKGLVNQI- 180 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 --LDRESIGLKINELLVVEYYSR 201 >gi|28194853|gb|AAO33688.1|AF481043_1 ribosomal protein S4 [Tortella flavovirens] Length = 196 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S L+ K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSSINQLNSN---KKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|63101035|gb|AAY33142.1| small ribosomal protein 4 [Lepyrodon tomentosus] Length = 199 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A R++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARRAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|6002025|emb|CAA58919.1| ribosomal protein S4 [Alstroemeria aurantiaca] Length = 196 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKIPRSRN----DLKNQLRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD ++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNTLFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + R ++P++++++ Sbjct: 116 ILVNGRVVDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPREELPKHLTIDPFQYKGWV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|63191714|gb|AAY34817.1| small ribosomal protein subunit 4 [Pohlia nutans] Length = 196 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRFARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 LVDIPSYRCKPQDFITIKDQQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIDLKINELLVVEYYSR 194 >gi|293634029|gb|ADE60394.1| ribosomal protein subunit 4 [Pogonatum campylocarpon] gi|293634043|gb|ADE60401.1| ribosomal protein subunit 4 [Pogonatum microstomum] Length = 195 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIDLKINELLVVEYYSR 193 >gi|104773806|ref|YP_618786.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983978|sp|Q1GAV4|RS4_LACDA RecName: Full=30S ribosomal protein S4 gi|152060954|sp|Q04B92|RS4_LACDB RecName: Full=30S ribosomal protein S4 gi|103422887|emb|CAI97549.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125470|gb|ADY84800.1| 30s ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 203 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +G+QL+ KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYIPGQHGPNHRGRLSEYGMQLQEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LNERQFRTLFARAGKIREGQHGTNFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALE-AVASRPSFVSFDEDKMEGQL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + P + LVVE+Y++ Sbjct: 178 VRFPERDEMEP---EIDEALVVEYYNK 201 >gi|12642238|gb|AAK00201.1| rps4 [Gigaspermum repens] Length = 192 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 2 IRRLGVLPGLTNKTPXLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 57 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN V+I Sbjct: 58 NYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMALTIPEARQLVNHRHILVNDCMVDIP 117 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A + + +++ VP +++ N +I L Sbjct: 118 SYRCKPQDFITIKDRQKSQAMITKNIDFSQKSKVPNHLTFNSLQKKGLVNQI---LDRES 174 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 IGLKINELLVVEYYSR 190 >gi|67035773|gb|AAY62817.1| small ribosomal protein subunit 4 [Myurium hochstetteri] Length = 198 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|66866233|gb|AAY57786.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 205 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 13/209 (6%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 2 YRGPRVRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 59 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMVA 177 N R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 118 NNRIVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNLDFYQKYKIPNHLTYNSLEKKG 177 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 178 LVNQI---LDRESIGLKINELLVVEYYSR 203 >gi|94968282|ref|YP_590330.1| SSU ribosomal protein S4P [Candidatus Koribacter versatilis Ellin345] gi|152060923|sp|Q1IS94|RS4_ACIBL RecName: Full=30S ribosomal protein S4 gi|94550332|gb|ABF40256.1| SSU ribosomal protein S4P [Candidatus Koribacter versatilis Ellin345] Length = 209 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + ++ RR G L+ + K + R++ PG HG+ RK+K +GLQLR Sbjct: 1 MARYKDAVCRLCRREGTKLFLKGPKCFTDKCAIEKRNFAPGQHGKDRKAKIVGYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ Y E +FR+ F++A + +G T L+ LE RLD +VYR F ARQ Sbjct: 61 KQKTKRMYFA-QENQFRNYFEKAAKGQGVTGEMLLQQLERRLDNVVYRLGFASARRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+ VNG+ VNI SY+ D I V++ SK++ + + +L + VP ++ V+ D Sbjct: 120 LVRHGHIAVNGKKVNIPSYQVSVKDEIAVREGSKEMTLLGQIKELTSHTTVPGWLIVDRD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N + +P ++ PV L+VE YS+ Sbjct: 180 NWKGSVSSLP-RRDEIQMPV--NEQLIVELYSK 209 >gi|67035925|gb|AAY62889.1| small ribosomal protein subunit 4 [Campylophyllum halleri] Length = 199 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDFIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|24473820|gb|AAL82753.1| small ribosomal subunit protein 4 [Brachymenium globosum] gi|63191695|gb|AAY34809.1| small ribosomal protein subunit 4 [Osculatia columbica] Length = 199 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPCVRIIRRLGALPGLTSKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A + +G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKVKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNINLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|3914849|sp|O20219|RR4_GLAMU RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292882|emb|CAA92553.1| ribosomal protein S4 [Gladiolus murielae] Length = 195 Score = 247 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K K + A + AS + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKNKQRSKALIQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WIGLKINELLVVEYYSR 193 >gi|307683499|dbj|BAJ19728.1| ribosomal protein S4 [Pseudotsuga sinensis var. wilsoniana] Length = 201 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRP----KYRNDSINRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 57 HYG-LTEQQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + + + L +R +P +++ N Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRTIIRKNIDLLQRDKLPNHLTFNSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|47606884|gb|AAT36362.1| ribosomal protein subunit 4 [Bryobrothera crenulata] Length = 200 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G L G +S K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGV-LPGLTNKISQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 117 VNNFIVDIPSYRCKPQDFITIKNQKKSEVIINKNMEFYQKSKIPNHLTYSSLEKKGLVKQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRESIGLKINELLVVEYYSR 198 >gi|222103522|gb|ACM44290.1| small ribosomal protein subunit 4 [Entodon flavescens] Length = 203 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKTPQLKSSST---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKNQRKSENIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|221632952|ref|YP_002522175.1| 30S ribosomal protein S4 [Thermomicrobium roseum DSM 5159] gi|254764619|sp|B9KZW1|RS4_THERP RecName: Full=30S ribosomal protein S4 gi|221156886|gb|ACM06013.1| ribosomal protein S4 [Thermomicrobium roseum DSM 5159] Length = 217 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 16/219 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTR----SYGPGLHG--QRRKSKPSYF 48 M + ++ RR G L+ + PK P+ R +Y PG HG QR +PS F Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCFGPKCPIVKRHPNKNYPPGQHGPTQRAARRPSEF 60 Query: 49 GLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPT 108 LQLR KQK+K+ YG I E++FR F EA+R G T NL+ LESRLD +VYR F + Sbjct: 61 ALQLREKQKLKRVYG-ILERQFRRHFDEAERRPGLTGDNLLQILESRLDNVVYRLGFADS 119 Query: 109 IFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEY 167 ARQ V H H LVNGR +I SY+ + GD+I V+ +S++ + A+ VP + Sbjct: 120 RRQARQLVRHGHFLVNGRKTDIPSYQVRPGDIIAVRPESRRREYFKVLEETAKNKAVPAW 179 Query: 168 ISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +S + + M +R+P+ ++ P + LVVE+YSR Sbjct: 180 LSRDLETMSGRVLRLPTR-DEIDIP-PVNTQLVVEYYSR 216 >gi|67035823|gb|AAY62842.1| small ribosomal protein subunit 4 [Wijkia extenuata] Length = 199 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|261378065|ref|ZP_05982638.1| ribosomal protein S4 [Neisseria cinerea ATCC 14685] gi|269145515|gb|EEZ71933.1| ribosomal protein S4 [Neisseria cinerea ATCC 14685] Length = 206 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K +++ PG HG +K + S +GLQLR Sbjct: 1 MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDS---APGQHG-GKKPRLSDYGLQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++FR F EA+R +G T L+ LESRLD +VYR F T AR Sbjct: 57 EKQKIRRIYG-VLERQFRRYFAEAERRKGSTGELLLQLLESRLDNVVYRMGFGSTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ + VNG+ VNI S++ K GDV+ +++K+K+ + EA LA + +P +++V+ Sbjct: 116 QLVSHKAIAVNGQVVNIPSFQVKVGDVVSIREKAKKQVRIQEALSLATQVGLPGWVAVDA 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F +P + + LVVEFYS+ Sbjct: 176 NKLEGVFKNMPDRAE---LTGDINEQLVVEFYSK 206 >gi|49182665|gb|AAT57795.1| small ribosomal protein [Adelanthus lindenbergianus] Length = 195 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKSKSSY---VDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ G++I +K K K + + + L + +P +++ + + + ++ Sbjct: 117 VDIPSYNCEPGNIITIKNKQKSQSIITKNINLFQNLKIPSHLTFDSIQLRGFVNQ---TV 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWVNLKINELLVVEYYSR 193 >gi|227892659|ref|ZP_04010464.1| ribosomal protein S4 [Lactobacillus ultunensis DSM 16047] gi|227865530|gb|EEJ72951.1| ribosomal protein S4 [Lactobacillus ultunensis DSM 16047] Length = 203 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFARAGKIREGQHGVNFMILLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G V+ +K+ SK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQVVGLKENSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDESLVVEYYNK 201 >gi|27227935|gb|AAN85765.1| ribosomal protein subunit 4 [Anomobryum prostratum] Length = 199 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKIPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKNRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|269308862|gb|ACZ34322.1| ribosomal protein small subunit 4 [Oedipodiella australis] Length = 195 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+ S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE R D +++R TI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMALTIPEARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + +++ VP +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQAIITKNIDFSQKSKVPNHLTFNSLQKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|28194677|gb|AAO33600.1|AF480955_1 ribosomal protein S4 [Gymnostomiella monodii] Length = 196 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S+ + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSF---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 +NI SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 IINIPSYRCKPQDFITIKDRQKSQVLITKNIDFFQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|63100971|gb|AAY33110.1| small ribosomal protein 4 [Bryonorrisia acutifolia] Length = 198 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIDLKINELLVVEYYSR 196 >gi|83416500|gb|ABC18270.1| small ribosomal subunit protein 4 [Dicranum scoparium] Length = 196 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 10/202 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P G Q K S + ++L KQK++ +YG I Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-I 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD ++ R PTI ARQ VNHRH+LVN Sbjct: 56 TERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVILRLGMAPTIPGARQLVNHRHILVNN 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I ++ + K A +++ +++ +P +++ + +I Sbjct: 116 RIVNIPSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 -LDQESIGLKINELLVVEYYSR 194 >gi|312880344|ref|ZP_07740144.1| SSU ribosomal protein S4P [Aminomonas paucivorans DSM 12260] gi|310783635|gb|EFQ24033.1| SSU ribosomal protein S4P [Aminomonas paucivorans DSM 12260] Length = 208 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ ++ R G L+ + + + R+ PG HG R++K S +GL+LR Sbjct: 1 MSRYTGPVCRLCRAEGTKLFLKGDRCYTERCAMAKRNSKPGQHG-TRRTKTSEYGLRLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++++YG ++E +F I+++A G T H+ + LE RLD +VYR + AR+ Sbjct: 60 KQKLRRFYG-LNESQFAQIYEKAAAMPGQTGHDFLQLLERRLDNVVYRLGLAVSRRQARE 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H LVNGR ++I S + GDV+ V++KS+ +A + +++ A R VP ++ +N + Sbjct: 119 LVRHGHFLVNGRKLDIPSAVLRAGDVVSVREKSRDVAVLKGNAEVAASRAVPAWLEINGE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M V +P V + LVVEFY+R Sbjct: 179 AMSGRVVTLPVR---EQIEVPVNEQLVVEFYAR 208 >gi|222103528|gb|ACM44293.1| small ribosomal protein subunit 4 [Brachythecium plumosum] Length = 203 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P G Q K S + ++L KQK++ +YG Sbjct: 6 RGPRVRIIRRLGILPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|116010505|emb|CAL37359.1| ribosomal protein S4 [Fontanesia phillyreoides subsp. fortunei] Length = 194 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + ++P +++++ + +I S Sbjct: 116 VDIPSYRCKPRDIIMAKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGSVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|157164972|ref|YP_001467696.1| 30S ribosomal protein S4 [Campylobacter concisus 13826] gi|171855075|sp|A7ZFY8|RS4_CAMC1 RecName: Full=30S ribosomal protein S4 gi|112800789|gb|EAT98133.1| ribosomal protein S4 [Campylobacter concisus 13826] Length = 208 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS + R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYTGPVEKLERRLGVSLALKGERRLAGKSALEKRPYAPGQHGQRR-AKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F+EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G +EV +KSK ++ A L A+ + ++ V + Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEPGSKVEVAEKSKNNPQIVRAIDLTAQTGIVAWVDVEKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + + + ++ +VE YS+ Sbjct: 179 KKFGIFTRNPEREEVI---IPVEERFIVELYSK 208 >gi|297625817|ref|YP_003687580.1| 30S ribosomal protein S4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921582|emb|CBL56136.1| 30S ribosomal protein S4 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 201 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K RR G +L G K R Y PG+HG+ R +K S + LQL+ KQK + Sbjct: 1 MARYTGPMTKKSRRFGTDLVGNDK-AFERRPYAPGVHGRGR-TKDSEYSLQLKEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F ++EA R G T L+ LESRLD +VYRA F T ARQ V+H H Sbjct: 59 AYG-VLEKQFHRYYEEASRRPGRTGDLLLQILESRLDNVVYRAGFASTRRQARQMVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 +LVNG+ VNI S+R D+I+V+ KS+++ + A + ERDVP +++V + M Sbjct: 118 ILVNGKKVNIPSFRVAPLDIIDVRAKSQEMTPFVIARETFGERDVPGWLTVKPNKMRVLV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P+ + + +VE YSR Sbjct: 178 HQLPTR---EQIVLDVNEQEIVELYSR 201 >gi|77019143|emb|CAH60177.1| chloroplast 30S ribosomal protein S4 [Codriophorus aciculare] Length = 195 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P + + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DHESIGLKINELLVVEYYSR 193 >gi|63100977|gb|AAY33113.1| small ribosomal protein 4 [Bryostreimannia turgida] Length = 198 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 DYIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|33239861|ref|NP_874803.1| 30S ribosomal protein S4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|41017828|sp|Q7VDG7|RS4_PROMA RecName: Full=30S ribosomal protein S4 gi|33237387|gb|AAP99455.1| Ribosomal protein S4 [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 202 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + +I RR+G+ K+ RS PG HG R+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRLRITRRLGDLPGLTRKAA--KRSNPPGQHGNARR-KRSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ISE++ K+A G T NL+ LE RLD + +R F PTI +RQ VNH H Sbjct: 58 NYG-ISERQLVRYVKKARAMEGSTGTNLLKLLEGRLDNVCFRLGFGPTIPGSRQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 V VNG++++I SY+CK GD I ++++ + +VP ++ + M A Sbjct: 117 VTVNGKTLDIASYQCKSGDTIAIRERKGSKKLAEGNLEFPGLANVPPHLELEKSKMTAKV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 TG---KCDREWVAIEINELLVVEYYSR 200 >gi|116010501|emb|CAL37357.1| ribosomal protein S4 [Abeliophyllum distichum] gi|116010503|emb|CAL37358.1| ribosomal protein S4 [Forsythia x intermedia] Length = 194 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIIMAKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|49182754|gb|AAT57839.1| small ribosomal protein [Marsupella aquatica] Length = 195 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ VN Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIELRGSVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|67036080|gb|AAY62966.1| small ribosomal protein subunit 4 [Camptochaete arbuscula] Length = 198 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|309322363|ref|YP_003934443.1| ribosomal protein S4 [Cathaya argyrophylla] gi|307683289|dbj|BAJ19596.1| ribosomal protein S4 [Cathaya argyrophylla] Length = 203 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 11/209 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P + + K S + ++ KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPQKRKDSM----NRSSSRKISQYRIRSEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I+++ PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFQLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER---DVPEYISVNHDNMVA 177 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IQVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNIDLFQRNRDKLPNHLTFHSLQCKG 175 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 FINQIIDSK---WISLKINELLVVEYYSR 201 >gi|310829557|ref|YP_003961914.1| ribosomal protein S4 [Eubacterium limosum KIST612] gi|308741291|gb|ADO38951.1| ribosomal protein S4 [Eubacterium limosum KIST612] Length = 209 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 115/214 (53%), Gaps = 13/214 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ + + RR G L+ + K R PG HG+RR +K S +GLQLR Sbjct: 1 MARYTEASCRQCRREGMKLYLKGERCYSTNKCAFERRPTPPGQHGKRR-TKLSEYGLQLR 59 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+F F A++ +G T NL+ LE+RLD +VYR + AR Sbjct: 60 EKQKVKRIYG-VLEKQFAHYFDLAEKQKGITGSNLLEILETRLDNVVYRLGLATSRKEAR 118 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNH 172 Q V H H LVNG+ VN+ SY KEGD IEVK KSK+ E + E R V ++S + Sbjct: 119 QLVQHAHFLVNGKKVNVPSYLVKEGDTIEVKAKSKKSPKFKEILEATENRAVAPWLSADL 178 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + + P+ V + +L+VE YS+ Sbjct: 179 DTLSGKVIGRPTR---EDIDVEIAEHLIVELYSK 209 >gi|63078611|gb|AAY29392.1| ribosomal protein S4 [Tortella arctica] gi|63078613|gb|AAY29393.1| ribosomal protein S4 [Tortella arctica] gi|63078630|gb|AAY29401.1| ribosomal protein S4 [Tortella inclinata] Length = 197 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKFKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|7109205|gb|AAF36678.1| ribosomal protein 4 [Timmia megapolitana] Length = 194 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLNMAPTIPGARQLVNHRHILVNDHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKNRQKSQAIIMKNIDFSQKYKVPNHLTFNSLQKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|67035899|gb|AAY62876.1| small ribosomal protein subunit 4 [Eriodon conostomus] gi|67035903|gb|AAY62878.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] gi|67035909|gb|AAY62881.1| small ribosomal protein subunit 4 [Cratoneuropsis relaxa] gi|67035911|gb|AAY62882.1| small ribosomal protein subunit 4 [Hypnobartlettia fontana] Length = 199 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63191857|gb|AAY34888.1| small ribosomal protein subunit 4 [Streptocalypta tortelloides] Length = 198 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRLRIIRRLGILPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 NRIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSFEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|300811296|ref|ZP_07091793.1| ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497660|gb|EFK32685.1| ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 203 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYVPGQHGPNHRGRLSEYGMQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G +SE++FR++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LSERQFRTLFARAGKIREGQHGTNFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALE-AVASRPSFVSFDEDKMEGQL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + P + LVVE+Y++ Sbjct: 178 VRFPERDEMEP---EIDEALVVEYYNK 201 >gi|268680562|ref|YP_003304993.1| ribosomal protein S4 [Sulfurospirillum deleyianum DSM 6946] gi|268618593|gb|ACZ12958.1| ribosomal protein S4 [Sulfurospirillum deleyianum DSM 6946] Length = 208 Score = 247 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRR-TKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR IF EA R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRIFDEAARREGNTGINLVLLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHD 173 V H H+LVNG V+I SY + GD +EV +KSK + A +L ++ + ++ V + Sbjct: 119 LVTHGHILVNGNKVDIPSYIVRAGDKVEVCEKSKNNPQIKRALELTQQTGIAPWVDVERE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F RIP ++V PV + L+VE YS+ Sbjct: 179 KAMGIFTRIPER-EEVVIPV--EERLIVELYSK 208 >gi|119899681|ref|YP_934894.1| 30S ribosomal protein S4 [Azoarcus sp. BH72] gi|152060933|sp|A1KB02|RS4_AZOSB RecName: Full=30S ribosomal protein S4 gi|119672094|emb|CAL96008.1| 30S ribosomal protein S4 [Azoarcus sp. BH72] Length = 209 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + R+Y PG HGQR + S +G+QLR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRAYAPGQHGQRSGQRLSGYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR ++ EADR RG T NL+ LE RLD++ YR F + ARQ Sbjct: 61 KQKIRRLYG-VLERQFRKVYAEADRRRGQTGENLLQLLEGRLDSVAYRMGFGASRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H VLVNG+ VNI SY + GDVIE+ + +K V A + AE R PE+I V+ Sbjct: 120 VVRHNGVLVNGKRVNIPSYTVRPGDVIELAEGTKGHLRVKAALEAAESRGFPEWIEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F P + + LVVE YSR Sbjct: 180 AGKGVFKAYPQRSE---LSATINEGLVVELYSR 209 >gi|320160440|ref|YP_004173664.1| 30S ribosomal protein S4 [Anaerolinea thermophila UNI-1] gi|319994293|dbj|BAJ63064.1| 30S ribosomal protein S4 [Anaerolinea thermophila UNI-1] Length = 212 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 14/216 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHG---QRRKSKPSYFGLQ 51 M K K+ RR GE L+ + PK R + PG HG Q R + S + Q Sbjct: 1 MGKYLGPVCKLCRREGEKLFLKGERCYSPKCSFEKRGFAPGQHGRTQQGRSERESDYARQ 60 Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 LRAKQK ++ YG I E++FR F A R +G T NL+ LE RLD +V+R F + Sbjct: 61 LRAKQKARRVYG-IFERQFRRYFGLALRKKGLTGLNLLQTLEMRLDNVVFRMGFASSRAQ 119 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDV-PEYISV 170 ARQ VNH H+ VN +I S K GD+I VK+ ++ L + + +R P +I Sbjct: 120 ARQLVNHGHIQVNNHRADIPSMLVKPGDIISVKESARSLTYWKDLLDVVDRRTCPMWIDR 179 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + N+ +R+P + + L+VE+YSR Sbjct: 180 DTKNLSGRILRLPERSE---IDGNLNEQLIVEYYSR 212 >gi|116010495|emb|CAL37354.1| ribosomal protein S4 [Verbena officinalis] Length = 194 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDPRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + +VP +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITAKDEQKSRTLIQNSLNSSPPEEVPNHLTLHPIQYKGLVNQIIDSQ 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|37992575|gb|AAR06466.1| small ribosomal protein 4 [Lepidopilidium portoricense] Length = 199 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGVLPGLTNKIPELKSSSI---TQSVSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH++V Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIVV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P Y++ N +I Sbjct: 117 NDSIVDIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKIKIPNYLTYNFVEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|20531085|gb|AAM27364.1| ribosomal protein 4 [Diphyscium suzukii] Length = 193 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 RIIRRLGALPGLTSKTPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VN Sbjct: 57 LLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K +++ +++ +P +++++ +I L Sbjct: 117 IPSYRCKPQDFITIKDRQKSQDIIVKNMDFSQKYKIPNHLTLDSLEKKGLVNQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|17025834|gb|AAL32083.1| ribosomal protein 4 [Mitthyridium sp. Orban 1995] Length = 200 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 2 YRGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 58 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 59 -LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 117 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ ++ + + P +++ N +I Sbjct: 118 NNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKHKTPTHLTFNSVEKKGLVNQI 177 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 178 ---LDQESIGLKINELLVVEYYSR 198 >gi|63191767|gb|AAY34843.1| small ribosomal protein subunit 4 [Cyrtopodendron vieillardii] Length = 199 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRARIIRRLGALPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + + +++G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K + + ++ +P +++ + + Sbjct: 116 VNDRIVDIPSYRCKPQDFITIKNRQKSQTIINKNIDFYQKYKIPNHLTYSSLEKKGFVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|33413227|emb|CAD86749.1| ribosomal protein small subunit 4 [Oreoweisia erosa] Length = 191 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLKSSSI---NQPTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LDQES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|293634033|gb|ADE60396.1| ribosomal protein subunit 4 [Pogonatum cirratum] Length = 193 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 KIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VN Sbjct: 57 LLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 IPSYRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|150251467|ref|YP_001312200.1| ribosomal protein S4 [Cycas taitungensis] gi|172048625|sp|A6H5H5|RR4_CYCTA RecName: Full=30S ribosomal protein S4, chloroplastic gi|149941517|dbj|BAF64941.1| ribosomal protein S4 [Cycas taitungensis] Length = 201 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P +R+ Q K S + ++ KQK++ Sbjct: 1 MSRYRGPRLKIIRRLRTLPGLTNKRP-KSRNDP---TNQSSSRKISQYRIRPEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGRAKGSTGQILLQLLEMRLDNIIFRLGMALTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 +LVN R V+I SYRCK DVI + + + A + + L+++D +P +++++ Sbjct: 116 ILVNDRVVDIPSYRCKPRDVITIIDQRRSRAMIGKNLDLSQKDQMPNHLTLHSSQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|307828400|gb|ADN94998.1| small ribosomal protein 4 [Fossombronia wattsii] Length = 197 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G + Y L K S + ++L KQK++ +YG + Sbjct: 1 GPRAKMIRRLGVLPGLTDRIIEPKSGYTSQL---VSNKKMSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV+ Sbjct: 57 TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVDD 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +VNI SY CK GDVI V+ + K + + ++ L ++ P +++++ + + ++ Sbjct: 117 DTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKPKTPNHLTLDSTRLRGSINQMID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 RD---WINLKINELLVVEYYSR 195 >gi|63078577|gb|AAY29375.1| ribosomal protein S4 [Pleurochaete luteola] gi|63078579|gb|AAY29376.1| ribosomal protein S4 [Pleurochaete luteola] gi|63078587|gb|AAY29380.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078589|gb|AAY29381.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078593|gb|AAY29383.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078595|gb|AAY29384.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078597|gb|AAY29385.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078599|gb|AAY29386.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078607|gb|AAY29390.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078632|gb|AAY29402.1| ribosomal protein S4 [Tortella nitida] Length = 197 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|63078640|gb|AAY29406.1| ribosomal protein S4 [Trichostomum brachydontium var. cuspidatum] gi|63078644|gb|AAY29408.1| ribosomal protein S4 [Trichostomum pallidisetum] Length = 197 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|67035807|gb|AAY62834.1| small ribosomal protein subunit 4 [Eulacophyllum cultelliforme] Length = 199 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + ++ +P ++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKFEAIISKNIEFYQKSKIPNHLIYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67036016|gb|AAY62934.1| small ribosomal protein subunit 4 [Rhynchostegium riparioides] Length = 199 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ +NHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRPDNVIFRLGMAPTIPGARQLINHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIIGKNMEFYQKYKIPNHLTYSFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|78369613|gb|ABB43036.1| ribosomal protein 4 [Syrrhopodon involutus] Length = 199 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGT-LSGLTNKIPQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ + + P +++ N +I Sbjct: 117 NNHMVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFFSKHKTPNHLTFNSVEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|116010509|emb|CAL37361.1| ribosomal protein S4 [Chionanthus virginicus] gi|116010511|emb|CAL37362.1| ribosomal protein S4 [Forestiera neomexicana] gi|116010513|emb|CAL37363.1| ribosomal protein S4 [Olea europaea] gi|116010515|emb|CAL37364.1| ribosomal protein S4 [Osmanthus heterophyllus] gi|116010517|emb|CAL37365.1| ribosomal protein S4 [Phillyrea angustifolia] Length = 194 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIIMTKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|63191665|gb|AAY34794.1| small ribosomal protein subunit 4 [Rozea pterogonioides] Length = 202 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 3 RYRGPRVRIIRRLGTLPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRXDNVIFRLGMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I VK + K + + + ++ +P +++ + + Sbjct: 119 VNDYMVDIPSYRCKPQDFITVKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQ 178 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 179 I---LDRESIGLKINELLVVEYYSR 200 >gi|222103482|gb|ACM44270.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] Length = 202 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 121 NDCIVDIPSYRCKPQDFITIKSQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 180 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 ---LDRESIGLKINELLVVEYYSR 201 >gi|237688560|ref|YP_002905178.1| ribosomal protein S4 [Pinus contorta] gi|226875388|gb|ACO89126.1| ribosomal protein S4 [Pinus contorta] Length = 201 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRXXXXXXXQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|63078642|gb|AAY29407.1| ribosomal protein S4 [Trichostomum crispulum var. angustifolium] Length = 197 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVIITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|24473814|gb|AAL82750.1| small ribosomal subunit protein 4 [Imbribryum blandum] Length = 196 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 11/204 (5%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGLTNKTPQLKINQSI------SNKKISQYRIRLEEKQKLRFHYG 54 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ V+HRH+LV Sbjct: 55 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVSHRHILV 113 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 114 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 173 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 ---LDRESIGLKINELLVVEYYSR 194 >gi|78484663|ref|YP_390588.1| ribosomal protein S4 [Thiomicrospira crunogena XCL-2] gi|90101733|sp|Q31IV9|RS4_THICR RecName: Full=30S ribosomal protein S4 gi|78362949|gb|ABB40914.1| SSU ribosomal protein S4P [Thiomicrospira crunogena XCL-2] Length = 206 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + + ++ PG HG RK + + +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVRSIESKCKIDQLPGQHGAGRK-RVTEYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EKKFR +KEADR +G T NL+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLEKKFRLYYKEADRRKGSTGVNLLQLLESRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNG+SVNI SY GDVI +++KS+ + + A +L A+ ++ V+ Sbjct: 119 SHKSIQVNGQSVNIPSYEVSAGDVISIREKSRNQSRIAAALELSAQAGNVGWVEVDSSKF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F +P + NL+VE YS+ Sbjct: 179 EGVFKTVPDR---SDLSADISENLIVELYSK 206 >gi|67036112|gb|AAY62982.1| small ribosomal protein subunit 4 [Mittenothamnium reptans] Length = 199 Score = 247 bits (631), Expect = 7e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---DQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E+RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLXLPETRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NNCIVDIPSYRCKPQDFITIKNQQKSEIIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035939|gb|AAY62896.1| small ribosomal protein subunit 4 [Heterocladium dimorphum] Length = 199 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + +L ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035702|gb|AAY62782.1| small ribosomal protein subunit 4 [Grimmia plagiopodia] gi|77019165|emb|CAH60188.1| chloroplast 30S ribosomal protein S4 [Grimmia elatior] gi|77019179|emb|CAH60195.1| chloroplast 30S ribosomal protein S4 [Grimmia laevigata] Length = 195 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 106/200 (53%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DHESIGLKINELLVVEYYSR 193 >gi|157786002|gb|ABV74173.1| small ribosomal protein 4 [Lopidium concinnum] Length = 198 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 7/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G KS + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKSAPQLKPSSINQ--STSNKKISQYRIRLEEKQKLRFHYG-I 57 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVNG Sbjct: 58 TERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVNG 117 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K K K + + + + ++ + +++ + +I Sbjct: 118 YIVDIPSYRCKPQDFITIKNKQKSESIISKNIEFYQKSKIANHLTYSSLEKKGLVNQI-- 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 -LDRESIGLKINELLVVEYYSR 196 >gi|6002035|emb|CAA58925.1| ribosomal protein S4 [Cocos nucifera] Length = 196 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + + L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGTLPGLTSKRP----KSGSDLKTQLRSGKRSQYRICLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLVRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK +I K K + A + ++P++++++ Sbjct: 116 ILVNGRIVDIPSYRCKPRGIITTKDKQRSKALIQNYIASPPPEELPKHLTIDSFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 +I S + + LVVE+ Sbjct: 176 NQIIDSK---WIGLKINELLVVEY 196 >gi|67036038|gb|AAY62945.1| small ribosomal protein subunit 4 [Myuroclada maximowiczii] Length = 199 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T + LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCIVDIPSYRCKPQDFITIKNQRKSETVINKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|67035901|gb|AAY62877.1| small ribosomal protein subunit 4 [Vittia pachyloma] Length = 199 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + + +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQQSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|163783136|ref|ZP_02178130.1| 30S ribosomal protein S4 [Hydrogenivirga sp. 128-5-R1-1] gi|159881470|gb|EDP74980.1| 30S ribosomal protein S4 [Hydrogenivirga sp. 128-5-R1-1] Length = 211 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 120/211 (56%), Gaps = 6/211 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSP--VNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQ 56 M + K+DR+ G + G+ +P + R++ PG HG+ R+ K S +G++L KQ Sbjct: 1 MGRYIGPWVKLDRKFGVVVSGKKSAPRIMQRRNFPPGQHGRTKGRRRKLSEYGIRLMEKQ 60 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K YG + EK+F+ F A +S+ +T+ L+ LE RLD +VYR F T ARQ V Sbjct: 61 KLKYLYGGLREKQFKRYFDLAAKSKENTADVLLQLLERRLDNVVYRLGFATTRRQARQLV 120 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNM 175 H H+LVNGR V+I Y + GD+IEVK S+ + + E + + R VPE++ ++ DN Sbjct: 121 AHGHILVNGRKVDIPHYEVEPGDIIEVKSSSRDIPFLKENLENIDPRSVPEWLELDKDNF 180 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++ P + + + + ++EFYS+ Sbjct: 181 RGKVLKNPEGVAE-YLEIPINVQYIIEFYSK 210 >gi|49182677|gb|AAT57801.1| small ribosomal protein [Bazzania sp. Davis 146] Length = 195 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV +N Sbjct: 57 RQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVAINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|67035730|gb|AAY62796.1| small ribosomal protein subunit 4 [Physcomitrella patens] Length = 186 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 9/192 (4%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G K+P S Q K S + ++L KQK++ +YG I+E++ + + Sbjct: 1 GVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVR 55 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A +++G T L+ LE RLD IV+R PTI ARQ VNHRHVLVN V+I SYRC Sbjct: 56 IARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHVLVNDCIVDIPSYRC 115 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K D I VK + K A + + +++ VP +++ + +I L + Sbjct: 116 KPEDSITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTQKKGLVNQI---LDRESIGLK 172 Query: 195 MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 173 INELLVVEYYSR 184 >gi|228016849|gb|ACP51675.1| ribosomal protein S4 [Pinus attenuata] Length = 201 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDPM----NRSSSRKISQYRIRLEEKQKLRY 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E+ + A R++G T L+ LE LD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERHLLKYVRIARRAKGSTGQVLLQLLEMCLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A+ + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRANNKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|328541060|gb|AEB21754.1| ribosomal protein S4 [Kurzia calcarata] Length = 197 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ Y K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTSKTLKLKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHIPINK 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I +++K K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPGDIITIREKQKSRSVITKNINLFQNSKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINRELIDLKINELLVVEYYSR 195 >gi|7109199|gb|AAF36675.1| ribosomal protein 4 [Rhabdoweisia crispata] Length = 190 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P + + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGTLPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI S Sbjct: 57 YLRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCTVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A + + +++ VP +++ N +I L Sbjct: 117 YRCKPQDFITIKNRQKSQAMISKNIDFSQKAKVPNHLTFNSLEKKGLVNQI---LDQESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DLKINELLVVEYYSR 188 >gi|49182692|gb|AAT57808.1| small ribosomal protein [Chiloscyphus appalachianus] Length = 195 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE R D ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYMRIARKAKGSTGQVLLQLLEMRXDNTIFRLGMSSTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 VDIPSYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSVNQMINR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWINLKINELLVVEYYSR 193 >gi|21914150|gb|AAM81297.1| ribosomal protein subunit 4 [Plagiobryum algovicum] gi|63191693|gb|AAY34808.1| small ribosomal protein subunit 4 [Rosulabryum albolimbatum] Length = 198 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 DRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|222103496|gb|ACM44277.1| small ribosomal protein subunit 4 [Brachythecium rutabulum] Length = 199 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T + LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCIVDIPSYRCKPQDFITIKNQRKSETVIDKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|157689480|gb|ABV65296.1| ribosomal protein S4 [Guaiacum officinale] Length = 195 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K RR+G K P + Q R K S + ++L KQK++ +YG + Sbjct: 1 GPRFKKIRRLGALPGLTNKRPKARTNT----RNQSRSGKKSQYRIRLEEKQKLRFHYG-L 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ +E RLD I++R TI ARQFVNHRH+LVN Sbjct: 56 TERQLLKYVRIARKAKGSTGQVLLQLIEMRLDNILFRLGMALTIPQARQFVNHRHILVND 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSS 185 R VNI SYRCK D+I V+ K V +++ ++++++ +I S Sbjct: 116 RIVNIPSYRCKPRDIITVRDDQKSRTLVQNYLDSPSQELAKHLTLHPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLRINELLVVEYYSR 193 >gi|46486568|gb|AAS98720.1| ribosomal protein subunit 4 [Racopilum cuspidigerum] Length = 200 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRFGVAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R V+I SYRCK D I +K + K A + ++ +P +++ + + Sbjct: 117 VNDRIVDIPSYRCKPQDFITIKDRQKSQAITSKNIDFYQKYKIPNHLTYSSLEKKRFVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDRESIDLKINELLVVEYYSR 198 >gi|315038024|ref|YP_004031592.1| 30S ribosomal protein S4 [Lactobacillus amylovorus GRL 1112] gi|325956476|ref|YP_004291888.1| 30S ribosomal protein S4 [Lactobacillus acidophilus 30SC] gi|312276157|gb|ADQ58797.1| 30S ribosomal protein S4 [Lactobacillus amylovorus GRL 1112] gi|325333041|gb|ADZ06949.1| 30S ribosomal protein S4 [Lactobacillus acidophilus 30SC] gi|327183304|gb|AEA31751.1| 30S ribosomal protein S4 [Lactobacillus amylovorus GRL 1118] Length = 203 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFARAGKIREGQHGVNFMILLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M + Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDESLVVEYYNK 201 >gi|67035783|gb|AAY62822.1| small ribosomal protein subunit 4 [Dendroalsia abietina] Length = 199 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T + LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEISLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + A + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRTSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|324986539|ref|YP_004276409.1| ribosomal protein S4 [Pinus nelsonii] gi|323522727|gb|ADX94975.1| ribosomal protein S4 [Pinus nelsonii] Length = 201 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DV+ ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVLTIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|307248854|ref|ZP_07530867.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307262278|ref|ZP_07543927.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306854781|gb|EFM86971.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868041|gb|EFM99868.1| 30S ribosomal protein S4 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 204 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 12/209 (5%) Query: 5 ESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKM 58 K K+ RR G +L+ + N PG HG RK + S +G QLR KQK+ Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG-ARKPRLSDYGSQLREKQKV 59 Query: 59 KKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 ++ YG I E++FR+ + EA+R +G+T NL+ LE RLD +VYR F T ARQ V+H Sbjct: 60 RRIYG-ILERQFRNYYTEANRLKGNTGENLLVLLEGRLDNVVYRMGFAATRAEARQLVSH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVA 177 + ++VNGR VNI SY+ DV+ V++KSK+ A + + +LA +R+ P ++ V+ M Sbjct: 119 KSIVVNGRVVNIPSYQVSVDDVVAVREKSKKQARIKASLELATQREKPTWLEVDATKMEG 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + +L+VE YS+ Sbjct: 179 VFKRTPER---SDLSADINEHLIVELYSK 204 >gi|146261545|gb|ABQ15082.1| ribosomal protein S4 [Paeonia brownii] Length = 196 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K RR+G K P T L Q R K S + ++L KQK++ +YG + Sbjct: 1 GPRFKKIRRLGALPGLTSKRPRATG----DLRNQLRSGKRSQYRIRLEEKQKLRFHYG-L 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ +E RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 TERQLLKYVRIAGKAKGSTGQVLLQLIEMRLDNILFRLGMASTIPGARQLVNHRHILVNG 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D+I K + + A + L+ ++P++++++ +I Sbjct: 116 RIVDIPSYRCKPQDIITAKDEKQSRALIQNYLDLSPHAELPKHLTLHPFEYKGLVNQIID 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 S + + LVVE+YSR Sbjct: 176 SK---WVSLQINELLVVEYYSR 194 >gi|46810996|gb|AAT01816.1| small ribosomal protein 4 [Calycularia crispula] Length = 197 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR G K+ Y + K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRPGALPGLTTKTLKLKSGYI---NQSTSNRKISQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ V+HRH+L+N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY C+ GDVI K + K + + ++ L ++ +VP +++ + + R+ Sbjct: 117 DAVDIPSYNCEPGDVITTKDRQKSRSIITRSADLFQKPEVPNHLTFDLAQFRGSVNRMID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 R---ELIDLKINELLVVEYYSR 195 >gi|20531079|gb|AAM27361.1| ribosomal protein 4 [Diphyscium chiapense] Length = 194 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGALPGLTSKTPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VN Sbjct: 58 LLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVN 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K +++ +++ +P +++++ +I L Sbjct: 118 IPSYRCKPQDFITIKDRQKSQNIIVKNMDFSQKYKIPNHLTLDSLEKKGLVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESIGLKINELLVVEYYSR 192 >gi|222103518|gb|ACM44288.1| small ribosomal protein subunit 4 [Hylocomium splendens] Length = 197 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P G Q K S + ++L KQK++ +YG Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 56 ITERQLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 116 DYIVDIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 --LDRESIGLKINELLVVEYYSR 195 >gi|17025808|gb|AAL32071.1| ribosomal protein 4 [Syrrhopodon mahensis] Length = 199 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNH+H+LV Sbjct: 58 -LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ + + + P +++ N +I Sbjct: 117 NNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKHKTPNHLTFNSIEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|67036114|gb|AAY62983.1| small ribosomal protein subunit 4 [Caribaeohypnum polypterum] Length = 199 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDYIVDIPSYRCKPQDFITIKNQRKSEIIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|37548847|gb|AAO32692.1| ribosomal protein 4 [Oligotrichum austroaligerum] Length = 196 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 KI RR+G K+ Y + K S + ++L KQK++ +YG I Sbjct: 1 GP-CKIIRRLGALPGLTNKTLQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-I 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN Sbjct: 56 TERQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVND 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + + A + +++ +P +++ N +I Sbjct: 116 RIVNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 -LDRESIGLKINELLVVEYYSR 194 >gi|46486552|gb|AAS98712.1| ribosomal protein subunit 4 [Braithwaitea sulcata] Length = 199 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGILPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 II-ERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I +K + K A + + ++ +P +++ + +I Sbjct: 117 NDRIVDIPSYRCKPQDFITIKNRQKSQAIINKNIDFYQKYKIPNHLTYSSLEKKGFVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035801|gb|AAY62831.1| small ribosomal protein subunit 4 [Neolindbergia cladomnioides] Length = 198 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K P S L K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKIPQLKSSSINQLTSN---KKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SY+CK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|92417457|gb|ABE76824.1| ribosomal protein subunit 4 [Pottia truncata] Length = 200 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K P S + K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGTLPGLSNKIPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 58 G-ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SYRCK D I + ++ K + + ++ +P +++ N + Sbjct: 117 VNNRIVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKSKIPNHLTFNSLEKKGLINQ 176 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 177 I---LDQESIGLKINELLVVEYYSR 198 >gi|28194663|gb|AAO33593.1|AF480948_1 ribosomal protein S4 [Hyophila involuta] Length = 195 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S+ + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLSNKTPHLKSSF---TNQSSSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYIRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKSKIPNHLTFNFLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|67035998|gb|AAY62925.1| small ribosomal protein subunit 4 [Toloxis imponderosa] Length = 197 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 CMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|295065730|ref|YP_003587670.1| ribosomal protein S4 [Anomochloa marantoidea] gi|251765254|gb|ACT15408.1| ribosomal protein S4 [Anomochloa marantoidea] Length = 201 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K+P + + L Q + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTRKTPKSRSN----LQNQLQSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I S+RCK D+I K + + + ++R +P +++++ Sbjct: 116 ILVNGRIVDIPSFRCKPQDIITTKDNQRSKRLIQNSIASSDRMQLPNHLTIDTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 176 KKIIARK---WIGLKINELLVVEYYSR 199 >gi|49182688|gb|AAT57806.1| small ribosomal protein [Cephaloziella hirta] gi|49182728|gb|AAT57826.1| small ribosomal protein [Cephaloziella varians] Length = 195 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNSNL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I +K K K + + + ++ +P +++ + + + + + Sbjct: 117 VDIPSYNCEPGDIITIKNKQKSQSIISKNLNSFQKSKIPSHLTFDLTQLQGSINQ---KV 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWVNLKINELLVVEYYSR 193 >gi|322436519|ref|YP_004218731.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX9] gi|321164246|gb|ADW69951.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX9] Length = 210 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 113/214 (52%), Gaps = 12/214 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRK-SKPSYFGLQLR 53 M++ ++ RR G L+ + K PV R++ PG HGQ RK K +GLQLR Sbjct: 1 MARYTGPVCRMCRRDGVKLFLKGSKCFTEKCPVEKRNFPPGQHGQSRKVKKVVGYGLQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK K+ Y + E +FR+ +++A G T L+ LE+RLD + YR + AR Sbjct: 61 EKQKAKRIYFTL-ETQFRAYYQKAANKTGVTGDLLLQQLETRLDNVCYRLGLATSRRQAR 119 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V H H+ VNGR VNI S++CK GD I V++ SK L+ A A ++ +N Sbjct: 120 QVVRHGHIQVNGRKVNIPSFQCKVGDEIAVREGSKTLSFFETAKDFAGGLQSVTWLDINR 179 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 D + V +P +DV PV L+VE YS+ Sbjct: 180 DTLSGKVVMLPKR-EDVQLPV--NEQLIVELYSK 210 >gi|49182801|gb|AAT57862.1| small ribosomal protein [Kymatocalyx madagascariensis] Length = 195 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+ Y K S + ++L KQK++ +YG ++E+ Sbjct: 2 CKIIRRLGGLPGLTSKTLKPKSGYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V Sbjct: 58 QLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNNLV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY C+ GD+I +K K K + + + ++ +P +++ + + + + + Sbjct: 118 DIPSYNCEPGDIITIKNKQKSQSIISKNLNSGQKSKIPSHLTFDLTQLQGSINQ---KVN 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 REWVNLKINELLVVEYYSR 193 >gi|124112120|ref|YP_001019095.1| ribosomal protein S4 [Chlorokybus atmophyticus] gi|152060548|sp|Q19VA6|RR4_CHLAT RecName: Full=30S ribosomal protein S4, chloroplastic gi|124012227|gb|ABD62252.2| ribosomal protein S4 [Chlorokybus atmophyticus] Length = 203 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 5/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G +L G ++ + K + S + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKIVRRLG-DLPGFTNKIQKRQASTQNKGKKTAKKRLSQYSIRLQEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++ ++A R +G T L+ LE RLD I+YR PTI ARQ VNH H Sbjct: 60 NYG-VTERQLLLYVRKARRIKGSTGQILLQQLEMRLDNIIYRLGMAPTIANARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VN R V I SYRCK D+I V+ S + ++ +P ++S +++VA Sbjct: 119 IVVNDRIVTIPSYRCKPKDIISVRNNSTSRNVITNNLSFSDSRLPPHLSFKKESLVALVN 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ + LVVE+YSR Sbjct: 179 GLVDRQ---WIPLNINELLVVEYYSR 201 >gi|18920743|gb|AAL82416.1| ribosomal protein system 4 [Herzogiella striatella] Length = 194 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 CRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + + ++ +P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|21914152|gb|AAM81298.1| ribosomal protein subunit 4 [Bryum arachnoideum] gi|21914160|gb|AAM81302.1| ribosomal protein subunit 4 [Bryum cyathiphyllum] Length = 197 Score = 246 bits (630), Expect = 9e-64, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKAPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 RIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|293634037|gb|ADE60398.1| ribosomal protein subunit 4 [Pogonatum dentatum] Length = 192 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 10/198 (5%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 I RR+G K+P PG Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLK----PGYMNQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 55 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VN Sbjct: 56 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVN 115 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + + + +++ +P +++ N +I L Sbjct: 116 IPSYRCKPQDFITIKDRQESQVIIDKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 172 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 ESIGLKINELLVVEYYSR 190 >gi|16565349|gb|AAL26194.1|AF313586_1 small ribosomal protein 4 [Selaginella deflexa] Length = 195 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ + K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTL---KPKSSHNDRPTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH+HV++N Sbjct: 57 RQLLKYVRIARKTKGSTGQVLLQSLEMRLDNTIFRLGMAPTIPGARQLVNHKHVVINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCKPGDIITMRDKQKSQSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|293634039|gb|ADE60399.1| ribosomal protein subunit 4 [Pogonatum japonicum] Length = 195 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R Sbjct: 57 RQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|219666517|ref|YP_002456952.1| 30S ribosomal protein S4 [Desulfitobacterium hafniense DCB-2] gi|254764585|sp|B8G1Z3|RS4_DESHD RecName: Full=30S ribosomal protein S4 gi|219536777|gb|ACL18516.1| ribosomal protein S4 [Desulfitobacterium hafniense DCB-2] Length = 208 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K ++ R+Y PG HGQ R KP+ +G+QLR Sbjct: 1 MARYTGPVCRLCRREGMKLFLKGDRCYTGKCAIDRRAYAPGQHGQSRGKKPTEYGIQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FRS + +A+R +G NL+ LE RLD +V++ F + ARQ Sbjct: 61 KQKVRRIYG-VQEKQFRSYYDKANRQKGIVGENLLRLLERRLDNVVFQLGFATSRPEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H +NGR V+I S+ + GDV+ VK+ SK + E +R P+++S++ + Sbjct: 120 LVRHGHFTINGRRVDIPSFLVRVGDVVGVKEASKSSPRLKEILSSLDRTPPKWMSLDANA 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + +P +D+ P +Q +L+VE YSR Sbjct: 180 ATGTIIALPDR-EDIQLP--IQEHLIVEKYSR 208 >gi|21914174|gb|AAM81309.1| ribosomal protein subunit 4 [Plagiobryum uliginosum] Length = 197 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 RIVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|83816564|ref|YP_445191.1| 30S ribosomal protein S4 [Salinibacter ruber DSM 13855] gi|294507075|ref|YP_003571133.1| 30S ribosomal protein S4 [Salinibacter ruber M8] gi|123529117|sp|Q2S3P0|RS4_SALRD RecName: Full=30S ribosomal protein S4 gi|83757958|gb|ABC46071.1| ribosomal protein S4 [Salinibacter ruber DSM 13855] gi|294343403|emb|CBH24181.1| 30S ribosomal protein S4 [Salinibacter ruber M8] Length = 200 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR E ++G P + + Y PG HGQ R+ + S + +QL+ KQK K Sbjct: 1 MARYRGPKQKIARRFKEPIFG-PSKALERKPYPPGQHGQSRRRRESEYAVQLKEKQKTKY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++F+++F +A R +G T L+ LE+RLD V+R T ARQFV HRH Sbjct: 60 TYG-LLERQFKNLFDKASRMQGVTGEKLLILLEARLDNTVFRMGIARTRRQARQFVAHRH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 ++VN V+I SY DV+ VK S+ L + + +R ++ ++ M F+ Sbjct: 119 IMVNDEVVDIPSYEMSPDDVVSVKPSSQDLEVIQTNVEHRQRTF-SWLEMDRQEMKGKFI 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 P+ + P + L+VE YS+ Sbjct: 178 DYPNREE---IPENIDEQLIVELYSK 200 >gi|228016218|gb|ACP51054.1| ribosomal protein S4 [Pinus squamata] Length = 203 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKIIRRLKTLPGLTSKRPKNRKD--SMNMNRSSSRKISQYRIRLEEKQKLRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RL+ I++R PTI ARQ VNH H Sbjct: 59 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLNNILFRLGMAPTIPGARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 118 IRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 178 NQIIDSK---WISLKINELLVVEYYSR 201 >gi|171060594|ref|YP_001792943.1| 30S ribosomal protein S4 [Leptothrix cholodnii SP-6] gi|226699083|sp|B1Y7N0|RS4_LEPCP RecName: Full=30S ribosomal protein S4 gi|170778039|gb|ACB36178.1| ribosomal protein S4 [Leptothrix cholodnii SP-6] Length = 207 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 90/214 (42%), Positives = 129/214 (60%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS ++ PG HG+ S+ S FGLQLR Sbjct: 1 MARYLGPKAKLARREGTDLYLKSARRSISDKSKFESK---PGQHGRTSGSRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + EK+FR F EADR +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLEKQFRRYFAEADRRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ V VNG+SVNI SY K GDVI V++KSK+ +++A +LA+ +P ++SV+ Sbjct: 117 QLVSHKAVTVNGQSVNIPSYLVKAGDVISVREKSKKQLRIIDALKLADSIGLPAWVSVDL 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F + P + + + +L+VE YSR Sbjct: 177 TKMEGIFKKAPDRDE---FGAEINESLIVELYSR 207 >gi|156598520|gb|ABU85518.1| ribosomal protein S4 [Passiflora biflora] Length = 198 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 12/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G KSP ++ R + S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKSPRVGSAF-------SRSGRKSQYCMRLEEKQKLRF 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 54 HYG-LTERQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 +LVN R V+I SYRCK D+I VK + K + ++ ++P ++ + Sbjct: 113 ILVNNRMVDIPSYRCKPRDLITVKDEQKSKDMIKKSLDSFPRNNLPTHLILYPKKYKGLV 172 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LV+E+YSR Sbjct: 173 TQIIDSK---CLGLKINELLVIEYYSR 196 >gi|78369629|gb|ABB43044.1| ribosomal protein 4 [Calymperes palisotii] Length = 201 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K P S ++ K S + ++L KQK++ +Y Sbjct: 2 RYRGPRVKIIRRLGTLSGLTNKIPQLKSSS---INQSISNKKISQYRIRLEEKQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 59 G-LTERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGIAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN R VNI SY+CK D I +K + K +++ + + +P +++ N + Sbjct: 118 VNNRIVNIPSYQCKPQDFITIKDQQKYQTMIVKNINFSPKYKIPSHLTFNSVEKKGLVNQ 177 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 178 I---LDQESIGLKINELLVVEYYSR 199 >gi|67035923|gb|AAY62888.1| small ribosomal protein subunit 4 [Hamatocaulis vernicosus] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|293634031|gb|ADE60395.1| ribosomal protein subunit 4 [Pogonatum cirratum] Length = 193 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 KIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VN Sbjct: 57 LLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D+I +K + + A + + +++ +P +++ N + +I L Sbjct: 117 IPSYRCKPQDLITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLDKKGLVNQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|63191881|gb|AAY34900.1| small ribosomal protein subunit 4 [Hyophiladelphus agrarius] Length = 194 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S+ + K S + ++L KQK++ YYG I+E+ Sbjct: 1 VKIIRRLGTLPGLSNKTPHLKSSF---TNQSSSNKKISQYRIRLEEKQKLRFYYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQILLQLLEMRLDNVLFRLGMAPTIPGARQLVNHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKSKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESVGLKINELLVVEYYSR 192 >gi|20531113|gb|AAM27377.1| ribosomal protein 4 [Grimmia laevigata] Length = 194 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HESIGLKINELLVVEYYSR 192 >gi|67035917|gb|AAY62885.1| small ribosomal protein subunit 4 [Campyliadelphus stellatus] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|325981829|ref|YP_004294231.1| 30S ribosomal protein S4 [Nitrosomonas sp. AL212] gi|325531348|gb|ADZ26069.1| ribosomal protein S4 [Nitrosomonas sp. AL212] Length = 208 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K K K RR GE L+ + K + R+Y PG HGQ +K + S +G QLR Sbjct: 1 MAKNLEPKCKQCRREGEKLFLKGGKCFTDKCAIERRNYPPGQHGQ-KKGRTSDYGGQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG I EK+FR+I+K AD+ RG T NL+ LE RLD + + F + ARQ Sbjct: 60 KQKIRRIYG-ILEKQFRNIYKVADKQRGITGDNLLQLLEGRLDNVAFHMGFGASRSEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +L+NG VNI SYR K GD +EV +K+K+ + A ++A R+ +I V+ Sbjct: 119 IVRHNGILINGSRVNIPSYRVKAGDTVEVAEKAKEQLRIKNALEMANNRNFATWIEVDTK 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F P P + +L+VE YS+ Sbjct: 179 AMKGIFKTKPER---SDLPATINESLIVELYSK 208 >gi|154148523|ref|YP_001405813.1| 30S ribosomal protein S4 [Campylobacter hominis ATCC BAA-381] gi|171769700|sp|A7HZX2|RS4_CAMHC RecName: Full=30S ribosomal protein S4 gi|153804532|gb|ABS51539.1| ribosomal protein S4 [Campylobacter hominis ATCC BAA-381] Length = 208 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 MS+ K++RR+G +L+ + KS + R Y PG HGQRR +K S +G QLR Sbjct: 1 MSRYTGPVEKLERRLGVDLFMKGERRLAGKSALLKRPYAPGQHGQRR-AKVSEYGSQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +FKEA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-LSEKQFRRLFKEAARREGNTGEILVQLLEQRLDNLVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LV+G+ V+I SY K G IE+ +KSK +L A +L A+ + ++ V D Sbjct: 119 LVTHGHILVDGKRVDIPSYSVKVGQKIEIAEKSKNNPQILRAVELTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + V + ++ +VE YS+ Sbjct: 179 KKFGIFTRKPERDEIV---IPIEERFIVELYSK 208 >gi|21914164|gb|AAM81304.1| ribosomal protein subunit 4 [Plagiobryum lisae] gi|21914168|gb|AAM81306.1| ribosomal protein subunit 4 [Bryum pachytheca] gi|25986603|gb|AAL92524.1| small ribosomal subunit protein 4 [Bryum ruderale] gi|25986605|gb|AAL92525.1| small ribosomal subunit protein 4 [Bryum radiculosum] gi|27227937|gb|AAN85766.1| ribosomal protein subunit 4 [Bryum kikuyuense] gi|27227941|gb|AAN85768.1| ribosomal protein subunit 4 [Bryum clavatum] Length = 197 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 RIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|37548831|gb|AAO32684.1| ribosomal protein 4 [Alophosia azorica] Length = 192 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IIRRLGALPGLTSKTPXSKSSYI---DRSXSNKKXSQYRIRLEEKQKLRFHYG-LTERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + A ++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I Sbjct: 57 LKYVRIARGAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHIXINDGIVDI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SY C+ GD I +K + K A + + L ++ +P +++ + + ++ Sbjct: 117 PSYXCQPGDFITIKNRQKSQAIITKNIBLFQKFKIPXHLTFDSSEXXGXVNQ---TINRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 WIDLKINELLVVEYYSR 190 >gi|3098228|gb|AAC15562.1| small ribosomal protein 4 [Fontinalis antipyretica] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + +L ++ +P +++ +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSEALISKNIELYKKYKIPNHLTYISLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|293634059|gb|ADE60409.1| ribosomal protein subunit 4 [Pogonatum urnigerum] Length = 194 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 57 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|222103430|gb|ACM44244.1| small ribosomal protein subunit 4 [Oxystegus tenuirostris] Length = 202 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S K S + ++L KQK++ +YG Sbjct: 5 RGPRVRIIRRLGTLPGLSNKTPNLKSSS---TSQSNSNKKISQYRIRLEEKQKLRFHYG- 60 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 61 ITERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 120 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 121 NRIVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI- 179 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 --LDQELIGLKINELLVVEYYSR 200 >gi|222103422|gb|ACM44240.1| small ribosomal protein subunit 4 [Brothera leana] Length = 196 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+ + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNNY 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K V + + +++ VP +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKNRQKSQFIVAKNIEFSQKYKVPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LNKESIGLKINELLVVEYYSR 194 >gi|328541084|gb|AEB21766.1| ribosomal protein S4 [Telaranea herzogii] Length = 197 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ SY K S + ++L KQK++ YYG + Sbjct: 1 GPRVKVIRRLGALPGLTSKTLKPKSSYN---DRSTSNKKISQYRIRLEEKQKLRFYYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD + TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILCLGMARTIPGARQLVNHRHIPIND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I ++ K K + + + L + +P +++++ + Sbjct: 117 NIVDIPSYNCEPGDIITIRDKQKSQSVITKNMNLFQNLKIPNHLTLDSIKSCGFVNQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|328541068|gb|AEB21758.1| ribosomal protein S4 [Zoopsis leitgebiana] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + K+ RR+G K+ SY K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKVIRRLGALPGLTSKTLKLKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T L+ E RLD + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQLLKYVRIARKAKGSTGQVLLQLPEMRLDNTILRLGMASTIPGARQLVNHRHISI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + Sbjct: 117 NNDIVDIPSYNCELGDIIMIRDKPKSQSMITKNINLFQNSKIPSHLAFDPIKLCGSVNQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TIDRESVNLKINELLVVEYYSR 197 >gi|86438870|emb|CAJ55407.1| small ribosomal protein 4 [Plagiochila acanthocaulis] Length = 195 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGSLPGLTSKALKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE R D ++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N V+I SY C+ GD+I ++ K K + V + ++ +P +++ + + + Sbjct: 117 ISINNDIVDIPSYNCELGDIITIRNKQKSQSIVTKNINSFQKLKIPSHLTFDSTQLRGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVV 201 ++ + + + LVV Sbjct: 177 NQMINR---EWINLKINELLVV 195 >gi|3914862|sp|O20280|RR4_ROMRE RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292992|emb|CAA92559.1| ribosomal protein S4 [Romulea revelieri] Length = 195 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R T ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTNPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K K K A + AS + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKNKQKSKALIQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WIGLKINELLVVEYYSR 193 >gi|307543849|ref|YP_003896328.1| 30S ribosomal protein S4 [Halomonas elongata DSM 2581] gi|307215873|emb|CBV41143.1| 30S ribosomal protein S4 [Halomonas elongata DSM 2581] Length = 206 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + +P + PG+HGQRR + S +GLQLR KQ Sbjct: 1 MARYIGPKCKLSRREGTDLFLKSGVTPFEKKCKSEQIPGVHGQRR-QRISEYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +KEA R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEKQFRNYYKEAARLKGATGELLLQLLESRLDNVVYRMGFGSTRSEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNM 175 +H+ + VNGR+VN+ SY+ K GDV+ V++K+K A + A + A R ++ + M Sbjct: 119 SHKAIAVNGRTVNVASYQVKPGDVVSVREKAKNQARIQNALGIAANRGDVAWVETDAKKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + NL+VE YS+ Sbjct: 179 EGTFKALPERGD---LSADINENLIVELYSK 206 >gi|291334081|gb|ADD93754.1| ribosomal protein S4 [uncultured marine bacterium MedDCM-OCT-S05-C114] Length = 202 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ +I+RR G ++ K R+Y PG HG + K S +G L KQK++ Sbjct: 1 MSRYTGPTTRINRRFGMAIFPANK-AFERRTYPPGQHGPTYRRKVSDYGEGLLEKQKLRM 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y ++EK+FR++F++A R +G T N ++FLE+RLD +VYR F T AARQ+VNH H Sbjct: 60 LYC-LTEKQFRNLFEKAKRKQGVTGENFLTFLETRLDNVVYRLGFAKTRKAARQYVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 +LVNG+ V+I S+ GD I V++K+ + + P ++ VN D++ T Sbjct: 119 ILVNGKKVDIPSFAVSVGDEIGVREKTSSRQLATRNLEGTQYHPSPPWVDVNADSLQGTV 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + + + LVVEFYSR Sbjct: 179 SRFPQNDE---LEQSINVQLVVEFYSR 202 >gi|110456648|gb|ABG74767.1| ribosomal protein S4 [Jasminum leratii] Length = 203 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + + K RR+G KSP G L + R K S + ++L KQK+ Sbjct: 1 MPRYLGPRFKKIRRLGALPGLTNKSP----KAGSDLRKKPRSRKKSQYRIRLEEKQKLCF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG + + + + A +++G T L+ LE RLD I++R TI AARQ VNHRH Sbjct: 57 HYG-LRDYQLLKYVRIAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+ SYRCK D+I K K + + + +++P +++++ Sbjct: 116 ILVNGRIVDRPSYRCKPRDIIMTKDNQKSRTLIQNSLDSSPHKELPNHLTLHPFQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WVGLKINELLVVEYYSR 199 >gi|295136984|ref|YP_003587530.1| ribosomal protein S4 [Pisum sativum] gi|293338556|gb|ADE43529.1| ribosomal protein S4 [Pisum sativum] Length = 197 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 13/207 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G R P Q R SK S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLT-------RKELPVGSEQSRSSKKSQYRIRLEEKQKLRF 53 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 54 HYG-LTERQLLKYVRIAGKAKGSTGEVLLQLLEMRLDNILFRLGMAATIPQARQLVNHRH 112 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATF 179 VLVNGR V+I SYRCK D+I K K + + + A R +P ++ + Sbjct: 113 VLVNGRIVDIPSYRCKPEDIITAKDDKKSRTLIQNSLESAPRKQLPTHLIL-PFQYKGLV 171 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 172 KQIIDSK---WVGLEINELLVVEYYSR 195 >gi|239618238|ref|YP_002941560.1| ribosomal protein S4 [Kosmotoga olearia TBF 19.5.1] gi|259495284|sp|C5CGH5|RS4_KOSOT RecName: Full=30S ribosomal protein S4 gi|239507069|gb|ACR80556.1| ribosomal protein S4 [Kosmotoga olearia TBF 19.5.1] Length = 208 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + PK V R + PG HG + K + +G+QLR+ Sbjct: 1 MARYTGPVCKLCRREGFKLYLKGERCFTPKCAVVKRPFAPGQHGSATR-KLTQYGMQLRS 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ +K+ YG + EK+FR F+ A R +T LI LESRLD +VYR F + ARQ Sbjct: 60 KQALKRMYG-VLEKQFRRYFEIASRKSEETGTALIKVLESRLDNVVYRMGFASSRKQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V+H HVLVNGR VN SY + GD+IE+K+KSK V EA + + R P ++ ++ D Sbjct: 119 LVSHGHVLVNGRKVNKASYSVRPGDIIEIKEKSKAKVPVKEAIEASRNRTTPPWLEIDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TFVR P ++V PV +Q ++E YS+ Sbjct: 179 AARGTFVRFPER-EEVDIPVDLQS--IIELYSK 208 >gi|42556444|gb|AAS19817.1| small ribosomal protein 4 [Lepicolea scolopendra] Length = 191 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L + +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITIRNKEKSQSIITKNINLFQNLKIPSHLTFDSTKLRGSITQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ITLKINELLVVEYYSR 189 >gi|11228615|gb|AAG33093.1| small ribosomal protein 4 [Arctoa fulvella] Length = 191 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K K A +++ +++ VP +++ N +I L Sbjct: 117 SYRCKPQDFITIKNCQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LDQES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|154174170|ref|YP_001409132.1| 30S ribosomal protein S4 [Campylobacter curvus 525.92] gi|171769259|sp|A7H0Z0|RS4_CAMC5 RecName: Full=30S ribosomal protein S4 gi|112802255|gb|EAT99599.1| ribosomal protein S4 [Campylobacter curvus 525.92] Length = 208 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQRR +K S +GLQLR Sbjct: 1 MARYTGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRR-AKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FR +F+EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G +EV +KSK ++ A L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSYRVEPGSKVEVIEKSKNNPQIVRAIDLTAQTGIVGWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + + + ++ +VE YS+ Sbjct: 179 KKFGIFTRNPEREEVI---IPIEERFIVELYSK 208 >gi|21914182|gb|AAM81313.1| ribosomal protein subunit 4 [Bryum caucasicum] Length = 198 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 DRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKNKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|20531111|gb|AAM27376.1| ribosomal protein 4 [Encalypta streptocarpa] Length = 191 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGILPGLTNKTPKLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +V+R PTI ARQ VNHRH+LVN VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHILVNECIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ VP ++S + +I L Sbjct: 117 SYRCKPQDFITIKDRQKSQAIIIKNIDFSQKFKVPNHLSFDTLQKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|116624175|ref|YP_826331.1| 30S ribosomal protein S4P [Candidatus Solibacter usitatus Ellin6076] gi|122253109|sp|Q01WB9|RS4_SOLUE RecName: Full=30S ribosomal protein S4 gi|116227337|gb|ABJ86046.1| SSU ribosomal protein S4P [Candidatus Solibacter usitatus Ellin6076] Length = 210 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 10/213 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + RR G L+ + K + R++ PG HG+ R K +GLQLR Sbjct: 1 MARYIGPVCRQCRREGMKLYLKGERCHSEKCAIEKRNFIPGQHGKDRAKKIVGYGLQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E++FR+ F++A +G T NL+ LE RLD+++YR F + ARQ Sbjct: 61 KQKVRRVYG-VLERQFRNAFEKAALQKGITGENLMQNLERRLDSVIYRMGFGTSRAQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+ VNGR NI S GD I V++ SK A++L A A P +I V+ + Sbjct: 120 VVRHGHINVNGRKCNIPSALINVGDEITVRETSKNNATILSARDATAHAPAPNWIEVDRE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P V + + L+VE YS+ Sbjct: 180 GLKGRVQSLPKREDLVQ--IQLNEQLIVELYSK 210 >gi|153871948|ref|ZP_02000981.1| 30S ribosomal protein S4 [Beggiatoa sp. PS] gi|152071584|gb|EDN69017.1| 30S ribosomal protein S4 [Beggiatoa sp. PS] Length = 206 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 119/214 (55%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + K + PG HG +R + S + LQLR Sbjct: 1 MARYLGPKCKLSRREGVDLFLKSRARGLESKCKLEK---LPGQHGDKR-PRLSDYALQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++F + + +A R +G T NL+ LE RLD +VYR F T AR Sbjct: 57 EKQKLRRLYG-VLERQFHNYYLKASRKKGSTGENLLMLLEGRLDNVVYRMGFAVTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q V+H+ +LVN +SVNI SY+ K GDVI ++ KS+ + A A E ++PE++ V+ Sbjct: 116 QLVSHKAILVNEKSVNIPSYQVKAGDVIAIRGKSRTQLRIKAALSQAVEFELPEWVEVDV 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + M F P+ + P M LVVE YS+ Sbjct: 176 EKMSGVFKAQPTIGE---LPGDMNVQLVVELYSK 206 >gi|83416510|gb|ABC18275.1| small ribosomal subunit protein 4 [Rhytidiadelphus squarrosus] Length = 198 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQKKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|67035851|gb|AAY62852.1| small ribosomal protein subunit 4 [Colobodontium vulpinum] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGILPGLTNKTPQLKSSS---SNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQQKSEIIINKNIEFYQKSKIPNHLTYNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|222103520|gb|ACM44289.1| small ribosomal protein subunit 4 [Polytrichum juniperinum] Length = 196 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 2 RVRIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R Sbjct: 58 RQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRI 117 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A + ++ +P +++ N +I L Sbjct: 118 VNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNYKIPNHLTFNSLEKKGLVNQI---L 174 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 DRESINLKINELLVVEYYSR 194 >gi|67035883|gb|AAY62868.1| small ribosomal protein subunit 4 [Taxithelium planum] Length = 199 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I R+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIYRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAATIPEARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K K K + + + +++ +P +++ N +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNKRKSETIINKNIEFSQKYKIPNHLTYNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 VDR---ELIGLKINELLVVEYYSR 197 >gi|67036044|gb|AAY62948.1| small ribosomal protein subunit 4 [Trachybryum megaptilum] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T + LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCMVDIPSYRCKPQDFITIKNQRKSETIIDKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|118626109|emb|CAL41757.1| small ribosomal protein 4 [Anastrophyllum alpinum] Length = 191 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRTKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VELKINELLVVEYYSR 189 >gi|63191775|gb|AAY34847.1| small ribosomal protein subunit 4 [Oligotrichum parallelum] Length = 194 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSGYI---NQAGSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 57 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDQQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|49182710|gb|AAT57817.1| small ribosomal protein [Gymnomitrion concinnatum] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKTFKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ VN Sbjct: 57 RQLLKYVRIARKAKGSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYSCELGDIITVKSKQKSQSIITKNVNLFQKLKIPGHLTFDSIELRGSVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|20531105|gb|AAM27373.1| ribosomal protein 4 [Dicranoweisia cirrata] Length = 192 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 LNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 PSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LNQE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|66866214|gb|AAY57779.1| small ribosomal protein 4 [Plagiopus oederianus] Length = 208 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 13/209 (6%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 YRGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 61 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 62 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 120 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMVA 177 N R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 121 NDRMVDIPSYRCKPQDFITIKDRQKSQAIIXXXXXXKNIDFYQKYKIPNHLTYNSLENKG 180 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + LVVE+YSR Sbjct: 181 LVNQI---LDRESIGLKTNELLVVEYYSR 206 >gi|78369625|gb|ABB43042.1| ribosomal protein 4 [Calymperes schmidtii] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRLKIIRRLGTLSGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SY+CK + I +K + K +++ + + +P +++ N +I Sbjct: 117 NNRIVNIPSYQCKPQEFITIKNQQKYQTMIIKNENFSPKYKIPSHLTFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|328541158|gb|AEB21803.1| ribosomal protein S4 [Lepidozia sp. 2 Shaw 5789] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|326793582|ref|YP_004311402.1| ribosomal protein S4 [Marinomonas mediterranea MMB-1] gi|326544346|gb|ADZ89566.1| ribosomal protein S4 [Marinomonas mediterranea MMB-1] Length = 206 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 122/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L + + + ++ PG+HG R+ + S +GLQLR KQ Sbjct: 1 MARYLGPTCKLSRREGTDLLLKSGARALESKCKAETVPGVHG-ARRGRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K A R +G T NL+ LESRLD +VYRA F T ARQ V Sbjct: 60 KVRRTYG-VLEKQFRNYYKHAARIKGATGENLLQLLESRLDNVVYRAGFGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNM 175 H+ +LVNG +VN+ SY+ K GDV+ +++K+K+ + A +L++ +I V+ + Sbjct: 119 GHKGILVNGETVNVASYQVKAGDVVSIREKAKKQLRIQNALELSKNRTSIHWIEVDATKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ATF P + NL+VE YS+ Sbjct: 179 EATFKAAPERAD---LSAEINENLIVELYSK 206 >gi|67035562|gb|AAY62712.1| small ribosomal protein subunit 4 [Pseudephemerum nitidum] Length = 194 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKIPQLK---TSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRLV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQAMISKNIDFSQKSKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|157689504|gb|ABV65308.1| ribosomal protein S4 [Ixonanthes icosandra x Ixonanthes cuneata] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S F ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQFRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K + K A + + ++++P+++++ +I S Sbjct: 116 IVDIPSYRCKPRDIITAKDEQKSRAMIQNSLDSFPQKELPKHLTLRPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + L+VE+YSR Sbjct: 176 K---WTGLKINELLIVEYYSR 193 >gi|67035966|gb|AAY62909.1| small ribosomal protein subunit 4 [Porotrichodendron nitidum] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ + +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKDQRKSEIIISKNIEFYQKSKISNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|20531066|gb|AAM27355.1| ribosomal protein 4 [Pogonatum perichaetiale] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R+ Sbjct: 57 RQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|63100981|gb|AAY33115.1| small ribosomal protein 4 [Ectropothecium leptochaeton] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYIRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I YRCK D+I +K + K + + + +R +P +++ + +I Sbjct: 117 NDCIVDISGYRCKPQDLITIKNQQKSETIINKNIEFYQRSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|24473808|gb|AAL82747.1| small ribosomal subunit protein 4 [Acidodontium sprucei] Length = 199 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPCVRIIRRLGALRGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDFITIKNRQKSQAIISKNLNLHQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|37960573|gb|AAP70656.1| small ribosomal protein 4 [Sphagnum affine] gi|37960609|gb|AAP70674.1| small ribosomal protein 4 [Sphagnum steerei] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + +Y + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTSKTPQSKSNYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|24473844|gb|AAL82766.1| small ribosomal subunit protein 4 [Plagiobryum zierii] Length = 197 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K A + + L ++ + P +++ N +I Sbjct: 117 RIVNIPSYRCKPEDSITIKDRQKSQAVISKNLNLYQKYETPNHLTYNFLKKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|270157887|ref|ZP_06186544.1| ribosomal protein S4 [Legionella longbeachae D-4968] gi|289163854|ref|YP_003453992.1| 30S ribosomal subunit protein S4 [Legionella longbeachae NSW150] gi|269989912|gb|EEZ96166.1| ribosomal protein S4 [Legionella longbeachae D-4968] gi|288857027|emb|CBJ10841.1| 30S ribosomal subunit protein S4 [Legionella longbeachae NSW150] Length = 206 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK----SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + PG HG +K + + +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHG-DKKPRLNNYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K++++YG + EK+FR +K A R +G T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KIRRFYG-VLEKQFRGYYKMAARMKGATGENLMTLLERRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNM 175 H+ +LVN + VN+ SY K GDVI V+Q++K + A L+E+ VP ++++V+ + Sbjct: 119 THKAILVNDKIVNVPSYLIKPGDVISVRQRAKNQGRIQAALALSEQRVPCDWLTVDTSSF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ NLVVE YS+ Sbjct: 179 KGTFSTAPTLTD---LSSDYNVNLVVELYSK 206 >gi|6002071|emb|CAA58943.1| ribosomal protein S4 [Oncidium ansiferum] Length = 196 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 9/204 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P + LH K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTSKIPRSRSDLQTQLH----SGKKSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I K K + A + + R ++P +++++ Sbjct: 116 ILVNGRIVDIPSYRCKARDIITTKDKERSKALIQNYLVSSPRGELPNHLTIDSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEF 203 I S + + LVVE+ Sbjct: 176 NHIIDSK---WIGLKINELLVVEY 196 >gi|3098262|gb|AAC15579.1| small ribosomal protein 4 [Thamnobryum alopecurum] Length = 198 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ E R D I++R PTI ARQ VNH H+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNIIFRLGMAPTIPGARQLVNHGHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|313901168|ref|ZP_07834656.1| ribosomal protein S4 [Clostridium sp. HGF2] gi|312954126|gb|EFR35806.1| ribosomal protein S4 [Clostridium sp. HGF2] Length = 200 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G ++ + + R+Y PG HG ++ K + +G QLR KQK++ Sbjct: 1 MSRINGPVWKTSRRLGFSILETGEE-LQKRAYAPGQHGPTKRVKLTNYGQQLREKQKIRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++E++F + F +A + +G T N + LESRLD +VYR F T AARQ VNH H Sbjct: 60 MYG-LNERQFYNTFIKASKMKGVTGDNFLGLLESRLDNLVYRMGFARTRRAARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I S+ K G V+E+K+KS+ + ++ EA + A + +I V+ D T++ Sbjct: 119 ILVNGKKVDIPSFIAKPGMVVEIKEKSRDMKAINEALE-ATLNTVAFIDVDKDAKKGTYL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + LVVEFY+R Sbjct: 178 RLPERSE---LNSEFNELLVVEFYNR 200 >gi|49182669|gb|AAT57797.1| small ribosomal protein [Anthelia julacea] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ E RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLPEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + L ++ +P ++ + + + ++ Sbjct: 117 VDIPSYNCQPGDIITVKNKQKSQLIIAKNINLFQKLKIPSHLIFDFTELRGVVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|3098182|gb|AAC15539.1| small ribosomal protein 4 [Mielichhoferia bryoides] gi|63191712|gb|AAY34816.1| small ribosomal protein subunit 4 [Mielichhoferia bryoides] Length = 198 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I R+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIXRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T + LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R V+I SYRCK D I +K + K + + ++ +P +++ N N +I Sbjct: 117 NRLVDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIDLKINELLVVEYYSR 196 >gi|324986467|ref|YP_004276338.1| ribosomal protein S4 [Pinus monophylla] gi|323522562|gb|ADX94904.1| ribosomal protein S4 [Pinus monophylla] Length = 201 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + + R++G T L+ LE RL+ I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRVSRRAKGSTGQVLLQLLEMRLNNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQPRLRAIIKKNIDLFQRDKLPNHLTFHPLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|49182768|gb|AAT57846.1| small ribosomal protein [Nowellia curvifolia] Length = 195 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + +Y K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGILPGLSNKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNH H+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISMNNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 ++I SY C+ GD+I ++ K + + + + L ++ P +++ N + + ++ + Sbjct: 117 IDIPSYNCQPGDIITIRNKLESRSMITKNINLFQKLKTPSHLTFNLTELQGSVNQMINR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWVNLKINELLVVEYYSR 193 >gi|24473824|gb|AAL82755.1| small ribosomal subunit protein 4 [Brachymenium angolense] Length = 198 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LVN Sbjct: 57 ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 DRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|18920775|gb|AAL82432.1| ribosomal protein system 4 [Plagiothecium nemorale] Length = 196 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + + ++ +P +++ N+ +I Sbjct: 117 IVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYNYLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|15837777|ref|NP_298465.1| 30S ribosomal protein S4 [Xylella fastidiosa 9a5c] gi|26399518|sp|Q9PE53|RS4_XYLFA RecName: Full=30S ribosomal protein S4 gi|9106141|gb|AAF83985.1|AE003951_10 30S ribosomal protein S4 [Xylella fastidiosa 9a5c] Length = 208 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR G +L + K + R PG HG RKSK S + QLR Sbjct: 1 MARYIGPSCKLARREGADLSLKSPSRALDSKCKLEQR---PGQHGAVRKSKLSDYASQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR+ +K A +G+T NL+ LE+RLD ++YR F T AAR Sbjct: 58 EKQKVKRIYG-VLERQFRNYYKNASTKKGNTGENLLQLLETRLDNVIYRMGFAVTRPAAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER--DVPEYISVN 171 Q V+HR VLVNG+ VN+ SY K GDV+ + Q++++ V E+ + ++ ++ V+ Sbjct: 117 QLVSHRRVLVNGKLVNLPSYHVKPGDVVALSQRAQKYLCVQESLTIKDQHGSAFSWVEVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F P P + L+VE YS+ Sbjct: 177 SEKFSGVFKAFPDRAD---LPSDINEALIVELYSK 208 >gi|63101049|gb|AAY33149.1| small ribosomal protein 4 [Oedicladium doii] Length = 199 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY+CK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRKSIDLKINELLVVEYYSR 197 >gi|37992453|gb|AAR06405.1| small ribosomal protein 4 [Canalohypopterygium tamariscinum] Length = 199 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMSPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 NG V+I SYRCK D I +K + K A + + + ++ +P ++ N + +I Sbjct: 117 NGYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYQKYKIPNHLIYNSLDKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|49182675|gb|AAT57800.1| small ribosomal protein [Balantiopsis diplophylla] Length = 195 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKTLKQKSSYI---DRSTSTKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD I V+ + K + + + L + +P +++ + + + ++ Sbjct: 117 VDIPSYNCEPGDNITVRNRQKSQSIITKNINLFQNSKIPSHLTFDSTKLRGFVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NRELINLKINELLVVEYYSR 193 >gi|39546761|gb|AAR28107.1| small ribosomal protein 4 [Polytrichadelphus purpureus] Length = 195 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 7/199 (3%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P Y K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSGYINQQT--VSNKKISQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN V Sbjct: 58 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDSIV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A ++ +++ +P +++ N +I L Sbjct: 118 NIPSYRCKPQDFITIKDRQESQAIIIRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 RESIGLKINELLVVEYYSR 193 >gi|17025862|gb|AAL32096.1| ribosomal protein 4 [Mitthyridium sp. Wall 3859] Length = 199 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKVKGSTGQILLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ ++ + + P +++ N +I Sbjct: 117 NNSIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKHKTPNHLTFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|63191743|gb|AAY34831.1| small ribosomal protein subunit 4 [Cryptopodium bartramioides] Length = 197 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGVLPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKYQTIISKNIDFCQKYKIPHHLTYNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIALKINELLVVEYYSR 195 >gi|28194781|gb|AAO33652.1|AF481007_1 ribosomal protein S4 [Crossidium seriatum] gi|28194783|gb|AAO33653.1|AF481008_1 ribosomal protein S4 [Crossidium seriatum] gi|28194791|gb|AAO33657.1|AF481012_1 ribosomal protein S4 [Tortula muralis] gi|28194795|gb|AAO33659.1|AF481014_1 ribosomal protein S4 [Tortula israelis] gi|28194797|gb|AAO33660.1|AF481015_1 ribosomal protein S4 [Tortula muralis] gi|28194801|gb|AAO33662.1|AF481017_1 ribosomal protein S4 [Tortula muralis var. obcordata] gi|28194803|gb|AAO33663.1|AF481018_1 ribosomal protein S4 [Tortula muralis] gi|28194805|gb|AAO33664.1|AF481019_1 ribosomal protein S4 [Tortula muralis] gi|28194807|gb|AAO33665.1|AF481020_1 ribosomal protein S4 [Tortula muralis] gi|28194809|gb|AAO33666.1|AF481021_1 ribosomal protein S4 [Tortula muralis] gi|28194811|gb|AAO33667.1|AF481022_1 ribosomal protein S4 [Tortula muralis] gi|28194813|gb|AAO33668.1|AF481023_1 ribosomal protein S4 [Tortula muralis] gi|28194823|gb|AAO33673.1|AF481028_1 ribosomal protein S4 [Tortula muralis] gi|28194825|gb|AAO33674.1|AF481029_1 ribosomal protein S4 [Tortula muralis] gi|28194843|gb|AAO33683.1|AF481038_1 ribosomal protein S4 [Tortula israelis] gi|28194845|gb|AAO33684.1|AF481039_1 ribosomal protein S4 [Tortula muralis] gi|28194847|gb|AAO33685.1|AF481040_1 ribosomal protein S4 [Tortula muralis var. aestiva] gi|28194849|gb|AAO33686.1|AF481041_1 ribosomal protein S4 [Tortula muralis] Length = 196 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|3914861|sp|O20278|RR4_PILTE RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292984|emb|CAA92558.1| ribosomal protein S4 [Pillansia templemannii] Length = 195 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K K + A + AS + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKNKQRSKALIQNFIASYPHQEELPNHLTIDPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WIGLKINELLVVEYYSR 193 >gi|27227945|gb|AAN85770.1| ribosomal protein subunit 4 [Bryum coronatum] Length = 198 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ V+HRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVSHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 DRIVNIPSYRCKPEDSITIKDRQKSQAIINKNLNLYQKYKTPNHLTYNFLKKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|67036030|gb|AAY62941.1| small ribosomal protein subunit 4 [Schwetschkea grateloupii] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D + +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCIVDIPSYRCKPQDFVTIKNQRKSENIISKNMEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|307683593|dbj|BAJ19775.1| ribosomal protein S4 [Larix decidua] Length = 201 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P Y + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRP----KYRNDSINRSSSRKISQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE R D I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK D I ++ + + + + L +R +P +++ N Sbjct: 116 IRVNDHMVDIPSYPCKPQDEITIRDQQRLRTIIRKNIDLLQRDKLPNHLTFNSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|116010521|emb|CAL37367.1| ribosomal protein S4 [Syringa vulgaris] Length = 194 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIIMTKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|28194851|gb|AAO33687.1|AF481042_1 ribosomal protein S4 [Tortula vahliana] Length = 196 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGALPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|24473836|gb|AAL82762.1| small ribosomal subunit protein 4 [Bryum cellulare] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGVLPGLTNKIPQLKTNLI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGIAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|28194793|gb|AAO33658.1|AF481013_1 ribosomal protein S4 [Pottia intermedia] Length = 196 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + ++ K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|302390984|ref|YP_003826804.1| 30S ribosomal protein S4P [Acetohalobium arabaticum DSM 5501] gi|302203061|gb|ADL11739.1| SSU ribosomal protein S4P [Acetohalobium arabaticum DSM 5501] Length = 208 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + + RR GE L+ + K + R Y PG G +R K S FG+QLR Sbjct: 1 MARDTKAVCRKCRREGEKLFLKGERCFSDKCAIERRPYAPGEQGNKR-QKLSEFGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG +SE +F+ F+ AD G T N + LESRLD IVYR F + ARQ Sbjct: 60 KQKVRQIYG-VSESQFKKYFEMADNKPGITGENFLKILESRLDNIVYRLGFAASRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H LVNG V+I SY +EGD +EVK SK + + E + ++++P ++ N + Sbjct: 119 LVRHGHFLVNGERVDIPSYLVEEGDEVEVKDSSKDMKRMQEIVEFTGQQNIPAWVEANLE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N ++ P +D+ PV L+VEFYSR Sbjct: 179 NKTGKVLKEPER-EDIDLPVR--EQLIVEFYSR 208 >gi|46811006|gb|AAT01821.1| small ribosomal protein 4 [Fossombronia sp. Stotler & Crandall-Stotler 3940] Length = 197 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G + Y L K S + ++L KQK++ +YG + Sbjct: 1 GPRAKMIRRLGVLPGLTDRIIEPRSGYTSQL---VSNKKMSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV+ Sbjct: 57 TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVDD 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +VNI SY CK GDVI V+ + K + + ++ L ++ P +++++ + + + Sbjct: 117 DTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLFQKPKTPNHLTLDLTRLRGSINQTID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 RD---WIDLKINELLVVEYYSR 195 >gi|63191779|gb|AAY34849.1| small ribosomal protein subunit 4 [Dawsonia superba] Length = 195 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R Sbjct: 57 RQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|328541154|gb|AEB21801.1| ribosomal protein S4 [Lepidozia microphylla] Length = 198 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K+ SY K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ D+I ++ + K + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPRDIITIRDRQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|222103488|gb|ACM44273.1| small ribosomal protein subunit 4 [Polytrichum sphaerothecium] Length = 196 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P Y + K S + ++L KQK++ +YG I+E Sbjct: 2 RVRIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN Sbjct: 58 RQLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDCI 117 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + + +++ +P +++ N +I L Sbjct: 118 VNIPSYRCKPQDFITIKDRQESQTIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---L 174 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 DRESISLKINELLVVEYYSR 194 >gi|217077309|ref|YP_002335027.1| 30S ribosomal protein S4 [Thermosipho africanus TCF52B] gi|226695088|sp|B7IHX2|RS4_THEAB RecName: Full=30S ribosomal protein S4 gi|217037164|gb|ACJ75686.1| ribosomal protein S4 [Thermosipho africanus TCF52B] Length = 209 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K + R + PG HG+ K K + +G+QLRA Sbjct: 1 MARYTGPQCKLCRREGMKLYLKGERCFTDKCAFDRRPFAPGDHGRD-KKKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ MK+ YG + E +FR ++ A R GDT NL+ +E RLD +VYR F ARQ Sbjct: 60 KQTMKRIYG-VLETQFRRYYETASRKSGDTRENLVVQVERRLDNVVYRLGFAVNRTTARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 VNH HVLVNGR V I SY+ + GDVIE+++KS+ + V A +L +++ +++V+++ Sbjct: 119 LVNHGHVLVNGRKVTIPSYQVRPGDVIEIREKSRDILPVKNAIELNKDKNTMPWLTVDYE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N T+ R P + + PV +Q ++E YSR Sbjct: 179 NYKGTYERNPKLEEVIDLPVDVQA--IIELYSR 209 >gi|157689436|gb|ABV65274.1| ribosomal protein S4 [Capparis flexuosa] Length = 193 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P G L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I VK + K V A +++P++++++ +I Sbjct: 116 DIPSYRCKPQDIITVKDEQKSRTLVQNLLDSSAHQELPKHLTLHTFQYEGLVNQIIDRK- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --CVGLKINELLVVEYYSR 191 >gi|67035642|gb|AAY62752.1| small ribosomal protein subunit 4 [Dichodontium pellucidum] Length = 190 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+ T+ ++ K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGTLPGLTSKT---TKLKSSSINQPTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN VNI S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHIVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A +++ +++ VP++++ N +I L Sbjct: 117 YRCKPQDFITIKNQQKSQAMIMKNLDFSQKYKVPDHLTFNSLEKKGLVNQI---LDQESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|313123420|ref|YP_004033679.1| 30S ribosomal protein s4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279983|gb|ADQ60702.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 203 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYVPGQHGPNHRGRLSEYGMQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G +SE++FR++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LSERQFRTLFVRAGKIREGQHGINFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALE-AVASRPSFVSFDEDKMEGQL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + P + LVVE+Y++ Sbjct: 178 VRFPERDEMEP---EIDEALVVEYYNK 201 >gi|33413247|emb|CAD86758.1| ribosomal protein small subunit 4 [Micromitrium tenerum] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 9 IRRLGALPGLTNKTPQLK----SGSINQSISNKKISQYRIRLEEKQKLRFHYG-ITERQL 63 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN VNI Sbjct: 64 LNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNCIVNI 123 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K + V++ +++ VP +++ N +I L Sbjct: 124 PSYRCKPQDFITIKDRQKSQSMVIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI---LDHE 180 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 181 SIGLKINELLVVEYYSR 197 >gi|89893244|ref|YP_516731.1| 30S ribosomal protein S4 [Desulfitobacterium hafniense Y51] gi|122483915|sp|Q250K5|RS4_DESHY RecName: Full=30S ribosomal protein S4 gi|89332692|dbj|BAE82287.1| 30S ribosomal protein S4 [Desulfitobacterium hafniense Y51] Length = 208 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K ++ R+Y PG HGQ R KP+ +G+QLR Sbjct: 1 MARYTGPVCRLCRREGMKLFLKGDRCYTGKCAIDRRAYAPGQHGQSRGKKPTEYGIQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + EK+FRS + +A+R +G NL+ LE RLD +V++ F + ARQ Sbjct: 61 KQKVRRIYG-VQEKQFRSYYDKANRQKGIVGENLLRLLERRLDNVVFQLGFATSRPEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H +NGR V+I S+ + GDV+ VK+ SK + E +R P++++++ + Sbjct: 120 LVRHGHFTINGRRVDIPSFLVRVGDVVGVKEASKSSPRLKEILSSLDRTPPKWMNLDANA 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + +P +D+ P +Q +L+VE YSR Sbjct: 180 ATGTIIALPDR-EDIQLP--IQEHLIVEKYSR 208 >gi|63191833|gb|AAY34876.1| small ribosomal protein subunit 4 [Syntrichia ruralis] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKIPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 NNCIVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LNQESIGLKINELLVVEYYSR 197 >gi|254798683|ref|YP_003058268.1| ribosomal protein S4 [Parachlorella kessleri] gi|229915631|gb|ACQ90974.1| ribosomal protein S4 [Parachlorella kessleri] Length = 207 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 13/212 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK------SKPSYFGLQLRA 54 MS+ K +I RR+GE K V R++ PG HG ++K +K S + ++L+ Sbjct: 1 MSRYRGPKLRIVRRLGELPGLTQK--VCVRNFPPGQHGPKKKLTGSQKAKESQYAIRLKE 58 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK++ YG I+E++ +EA R +G T L+ LE+RLD +++R F PTI AARQ Sbjct: 59 KQKLRFNYG-INERQLLKYIREARRRKGSTGEVLLQLLETRLDNVIFRLGFAPTIAAARQ 117 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H+LVN +NI SY CK DVI V + S+ L + + L VP ++ ++ + Sbjct: 118 LVAHGHILVNQHKINIPSYICKINDVIGVCETSRPLIT-KSLNSLGLPQVPSFLDLDQEK 176 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + A S + + LVVE+YSR Sbjct: 177 LSAVVTNSISRD---MVGLNINELLVVEYYSR 205 >gi|37992467|gb|AAR06412.1| small ribosomal protein 4 [Crossomitrium epiphyllum] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGV-LPGLTNKISQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI AARQ VNHRH+L+ Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPAARQLVNHRHILI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K K K + + + ++ +P +++ N +I Sbjct: 117 NDFLVDIPSYRCKSQDFITIKNKQKSKTIISKNIEFYQKYKIPNHLTYNFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|67035652|gb|AAY62757.1| small ribosomal protein subunit 4 [Hypnodontopsis spathulatus] Length = 202 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 10/200 (5%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISE 67 +I RR+G K+ G Q K S + ++L KQK++ +YG I+E Sbjct: 9 CRIIRRLGTLPGLTNKTSQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 63 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 64 RQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRLGLAPTIPGARQLVNHRHILVNDCI 123 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K +++ +++ VP +++ N +I L Sbjct: 124 VNIPSYRCKPQDSITIKDRQKSQTMIIKNLDFSQKTKVPNHLTFNFLEKKGLVNQI---L 180 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 181 DQESIGLKINELLVVEYYSR 200 >gi|11467651|ref|NP_050703.1| ribosomal protein S4 [Guillardia theta] gi|133950|sp|P17072|RR4_GUITH RecName: Full=30S ribosomal protein S4, chloroplastic gi|70879|pir||R3MD4 ribosomal protein S4, chloroplast - Cryptomonas sp. chloroplast (strain phi) gi|3602976|gb|AAC35637.1| ribosomal protein S4 [Guillardia theta] Length = 200 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 10/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+GE K+ T PG HG + KPS + ++L KQK++ Sbjct: 1 MSRYRGAVIKIIRRLGELPGLTRKTTTRT--SRPGQHG-TQARKPSEYAIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG ++EK+ + A R +G T L+ LE RLD +++R PTI AARQ VNH H Sbjct: 58 NYG-LTEKQLLQYVRTAKRIKGSTGEALLQLLEMRLDNVIFRLGMAPTIPAARQLVNHGH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY+CK GD+I ++Q K + V Q ++P ++ ++ DN+ Sbjct: 117 IKVNNTRVSIPSYQCKAGDMISIRQHPKSQSIVKNYLQFPGLANMPNHLQIDKDNLTGKI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 I V + L+VE+YSR Sbjct: 177 NGIIERD-----WVALNELLIVEYYSR 198 >gi|66866203|gb|AAY57775.1| small ribosomal protein 4 [Aulacomnium androgynum] Length = 206 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 13/209 (6%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S K S + ++L QK++ +YG Sbjct: 3 YRGPRVRIIRRLGALPGLTTKTPQLKSSSI---DQSTSNKKISQYRIRLEENQKLRFHYG 59 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 60 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 118 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMVA 177 N V+I SYRCK D I +K + K A + + ++ +P +++ + Sbjct: 119 NDHIVDIPSYRCKPQDFITIKDRQKSEAIIXXXXXXKNIDFYQKYKIPNHLTYSSLEKKG 178 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 179 LVNQI---LDRESIGLKINELLVVEYYSR 204 >gi|312889341|ref|ZP_07748895.1| SSU ribosomal protein S4P [Mucilaginibacter paludis DSM 18603] gi|311298218|gb|EFQ75333.1| SSU ribosomal protein S4P [Mucilaginibacter paludis DSM 18603] Length = 202 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQ-RRKSKPSYFGLQLRAKQKMK 59 M++ K KI RR E ++G K + ++Y PG+HG +R+ K S + QL KQK+K Sbjct: 1 MARYTGPKSKIARRFREPIFGPDK-ALERKNYPPGMHGASKRRGKQSEYSTQLMEKQKVK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + EK+F ++F A G T NL+ FLE+RLD VYR PT ARQ V H+ Sbjct: 60 YTYG-VLEKQFENLFHRASSKEGITGENLLKFLEARLDNAVYRLGIAPTRSGARQLVGHK 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG VNI SY K GDVI V++KSK + S+ + + ++ + N+ F Sbjct: 119 HITVNGEVVNIASYALKAGDVIAVREKSKTMESITTSVAGRRINKHSWLEWDPSNLTGKF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P+ + P ++ NL+VE YS+ Sbjct: 179 LNYPNRDE---IPENIKENLIVELYSK 202 >gi|37960583|gb|AAP70661.1| small ribosomal protein 4 [Sphagnum cuspidatum] Length = 195 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + SY + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITRSMDDSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|11228617|gb|AAG33094.1| small ribosomal protein 4 [Bryoxiphium norvegicum] Length = 191 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQKAQAIIIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|67036050|gb|AAY62951.1| small ribosomal protein subunit 4 [Oxyrrhynchium rugosipes] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCIVDIPSYRCKPQDFITMKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVTQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|328541038|gb|AEB21743.1| ribosomal protein S4 [Megalembidium insulanum] Length = 197 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K Y K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T + LE R D + R TI ARQ VNHRH+ +N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GD+I +++K K + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYNCEPGDIITIREKQKSQSVITRNINLFQNLKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWIDLKINELLVVEYYSR 195 >gi|153004799|ref|YP_001379124.1| 30S ribosomal protein S4 [Anaeromyxobacter sp. Fw109-5] gi|171769305|sp|A7HBP4|RS4_ANADF RecName: Full=30S ribosomal protein S4 gi|152028372|gb|ABS26140.1| RNA-binding S4 domain protein [Anaeromyxobacter sp. Fw109-5] Length = 208 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ S ++ RR ++ + K + R Y PG HGQ R K S +G+QLR Sbjct: 1 MARYNESVCRLCRRENLKMYLKGDRCYTDKCAIERRPYPPGQHGQGR-VKFSEYGVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E FR ++ A ++G T NL+ LE RLD +V+R F T ARQ Sbjct: 60 KQKVKRMYG-LLEAGFRHAYQNAAAAKGKTGENLLQTLELRLDNVVFRLGFADTRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H VNGR VNI SY C+ GD +E++ +S+++ + EA + R VP ++ ++ Sbjct: 119 LVRHGHFKVNGRKVNIPSYLCRAGDKVELRDRSRKVVRISEALEAVDRRGVPGWLELDKG 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T PS +D+ P +Q L+VE YS+ Sbjct: 179 GFKGTVRTQPSR-EDITMP--IQEQLIVELYSK 208 >gi|3914865|sp|O20399|RR4_WATAN RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293114|emb|CAA92563.1| ribosomal protein S4 [Watsonia angusta] Length = 195 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 LQLLKYVHIAGKAKGSTGQILLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE--ASQLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K K + A + AS + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKNKQRSKALIQNFIASSPHQEELPNHLTIDPFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WIGLKINELLVVEYYSR 193 >gi|37960617|gb|AAP70678.1| small ribosomal protein 4 [Sphagnum teres] Length = 195 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + SY + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDQQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|63191699|gb|AAY34811.1| small ribosomal protein subunit 4 [Leptostomum inclinans] Length = 194 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKTPNHLTYNSLKKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|293634035|gb|ADE60397.1| ribosomal protein subunit 4 [Pogonatum convolutum] Length = 192 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 LNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A + + +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKNQQKSQAIIAKNIDFSQKYKIPNHLTFNSLKKKGLVNQI---LNRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|86438878|emb|CAJ55409.1| small ribosomal protein 4 [Plagiochila chonotica] Length = 192 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 8/199 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + KI RR+G K+ + SY K S + ++L KQK++ +Y Sbjct: 1 RYRGPRVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHY 57 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G ++E++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ Sbjct: 58 G-LTERQLLKYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHIS 116 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 +N V+I SY C+ GD+I ++ K K +++ + ++ +P +++ + + + + Sbjct: 117 INNDIVDIPSYNCEPGDIITIRNKQKSQSAITKNINSFQKLKIPSHLTFDSTQLRGSVNQ 176 Query: 182 IPSSLKDVPYPVIMQPNLV 200 + + + + LV Sbjct: 177 MINR---EWINLKINELLV 192 >gi|67036124|gb|AAY62988.1| small ribosomal protein subunit 4 [Bissetia lingulata] Length = 198 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIIDKNIEFYQKSKIPNHLTYSSLEKKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|49182708|gb|AAT57816.1| small ribosomal protein [Goebeliella cornigera] Length = 197 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 7/200 (3%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTNKTPKPKSSYI--DRSTSSNKKISQYRIRLEEKQKLRFHYG-LTE 57 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++ PTI ARQ VNHRH+ VN + Sbjct: 58 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFCLGMTPTIPGARQLVNHRHISVNNAT 117 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + +R++P +++ + + + ++ Sbjct: 118 VDIPSYNCEPGDIIAIRNKEKSQSIITRNINAFQKREIPNHLTFDLTQLQGLVNQ---TI 174 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 NREFIDLKVNELLVVEYYSR 194 >gi|108804948|ref|YP_644885.1| 30S ribosomal protein S4P [Rubrobacter xylanophilus DSM 9941] gi|123068978|sp|Q1AU55|RS4_RUBXD RecName: Full=30S ribosomal protein S4 gi|108766191|gb|ABG05073.1| SSU ribosomal protein S4P [Rubrobacter xylanophilus DSM 9941] Length = 200 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + + DRR G L K+P+ + Y PG HG+ R + + +GL+L KQK + Sbjct: 1 MARYTGPRGRRDRRAGVMLSSMRKNPLEKKPYPPGEHGRDR-QRQTEYGLRLMEKQKARW 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG +SE++FR ++EA R G + NL+ +E R+D +VYR F + ARQ V H H Sbjct: 60 YYG-VSERQFRRAYEEAIRQPGVSGENLLRLMELRMDNVVYRMGFATSRPQARQLVVHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 L+NGR NI S K GDVI V+ KS++L + EA + VP ++ +H+N + Sbjct: 119 FLLNGRKHNIPSATLKPGDVITVRDKSRRLQPIQEAVE-QVVAVPAWLEADHENFTGRVL 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 PS + ++ L++EFYSR Sbjct: 178 HTPSRDE---IDAPVEEQLIIEFYSR 200 >gi|157689574|gb|ABV65343.1| ribosomal protein S4 [Thymelaea hirsuta] Length = 194 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRP----RAGSDLRNQLRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHLLVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I VK + K LA V + ++P++++++ +I Sbjct: 116 VDIPSYRCKPRDIISVKDEQKSLALVQNYLDSSTHEELPKHLTLHTLQYKGLVNQIIDRK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|118626051|emb|CAL39334.1| small ribosomal protein 4 [Herbertus aduncus] Length = 191 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKILKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKTKGSTGEVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I +K K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLYGSINQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|37992555|gb|AAR06456.1| small ribosomal protein 4 [Hookeria acutifolia] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIVRRLGVLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A R++G T L+ LE RLD I++R PTI ARQ VNHRH+ V Sbjct: 58 -ITERQLLNYVRIARRAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIGV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SYRCK D I +K + K A + + + ++ P +++ + RI Sbjct: 117 NNCIVNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKFKRPNHLTYSSLEKKGLVNRI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|37960575|gb|AAP70657.1| small ribosomal protein 4 [Sphagnum angustifolium] gi|37960589|gb|AAP70664.1| small ribosomal protein 4 [Sphagnum fuscum] gi|37960597|gb|AAP70668.1| small ribosomal protein 4 [Sphagnum portoricense] gi|37960599|gb|AAP70669.1| small ribosomal protein 4 [Sphagnum pulchrum] gi|37960601|gb|AAP70670.1| small ribosomal protein 4 [Sphagnum quinquefarium] gi|37960607|gb|AAP70673.1| small ribosomal protein 4 [Sphagnum squarrosum] gi|37960613|gb|AAP70676.1| small ribosomal protein 4 [Sphagnum subnitens] gi|37960619|gb|AAP70679.1| small ribosomal protein 4 [Sphagnum wulfianum] Length = 195 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + SY + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|227345127|gb|ACP28116.1| small ribosomal protein 4 [Chiloscyphus semiteres] Length = 191 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI AARQ VNH H+ +N V+I Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPAARQLVNHGHISINNYIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITIRNKHKSQSIITKNINLFQKLKIPSHLTFDSIKLRGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|93213402|gb|ABF01127.1| ribosomal protein subunit 4 [Entodon hampeanus] Length = 199 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDSIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|28194701|gb|AAO33612.1|AF480967_1 ribosomal protein S4 [Hymenostylium recurvirostre] Length = 196 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|11228650|gb|AAG33110.1| small ribosomal protein 4 [Kiaeria blyttii] Length = 190 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P S + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 YRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LDQESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|325684425|gb|EGD26593.1| 30S ribosomal protein S4 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 203 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + RSY PG HG + + S +GLQL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRSYVPGQHGPNHRGRLSEYGLQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G +SE++FR++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MFG-LSERQFRTLFVRAGKIREGQHGINFMILLERRLDNVVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + D M Sbjct: 119 HITVDGKRVDIPSYEVKVGQTISLKEKSKNLQQVKDALE-AVASRPSFVSFDEDKMEGQL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR P + P + LVVE+Y++ Sbjct: 178 VRFPERDEMEP---EIDEALVVEYYNK 201 >gi|218157233|gb|ACK58433.1| ribosomal protein subunit 4 [Psilopilum cavifolium] Length = 192 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 57 LNYVRIAGRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKDRQESQAIITRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|223936404|ref|ZP_03628316.1| ribosomal protein S4 [bacterium Ellin514] gi|223894922|gb|EEF61371.1| ribosomal protein S4 [bacterium Ellin514] Length = 202 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + +I RR G ++G P + R+YGPG+HG + + K + +GL L KQK++ Sbjct: 1 MARYTGPRVRISRRFGIPIFG-PTKYLERRNYGPGVHGPKSRRKHTDYGLGLIEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYG + E++FR +++ A + RG T ++ LE+RLD +V+ F T AARQ V+H H Sbjct: 60 YYG-LMERQFRGVYERALKRRGVTGEQMLQILETRLDNVVFHLGFANTRAAARQLVSHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 V VNGR VNI S+ K DVIE K + + + + R VP+++S+N + + Sbjct: 119 VRVNGRKVNIPSFALKVNDVIEAKDSNVSRQLATKNLETSTNRSVPDWLSLNKEALKGVV 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +RIPS + P VVEFYSR Sbjct: 179 MRIPSRDEIQPIA---NEQAVVEFYSR 202 >gi|42556410|gb|AAS19800.1| small ribosomal protein 4 [Chiloscyphus cuspidatus] gi|227345125|gb|ACP28115.1| small ribosomal protein 4 [Chiloscyphus novae-zeelandiae var. grandistipulus] Length = 191 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKQKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDPIKLRGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|63101037|gb|AAY33143.1| small ribosomal protein 4 [Cyptodon muelleri] Length = 198 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K S+ + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGILPGLTNKISQLKSSFI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|269959712|ref|ZP_06174092.1| 30S ribosomal protein S4 [Vibrio harveyi 1DA3] gi|269835635|gb|EEZ89714.1| 30S ribosomal protein S4 [Vibrio harveyi 1DA3] Length = 202 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 124/207 (59%), Gaps = 10/207 (4%) Query: 5 ESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQK+++ Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQKVRR 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V+H+ Sbjct: 60 MYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKA 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG+ VN+ S++ DV+ +++K+KQ A + A ++A +R+ P +I V+ M TF Sbjct: 119 ILVNGKVVNVPSFKVAANDVVSIREKAKQQARIKAALEVAEQREKPTWIEVDGGKMEGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + L+VE YS+ Sbjct: 179 KRMPER---SDLSADINEQLIVELYSK 202 >gi|11228613|gb|AAG33092.1| small ribosomal protein 4 [Arctoa falcata] Length = 190 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P S + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K K A +++ +++ VP +++ N +I L Sbjct: 117 YRCKPQDFITIKNCQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LDQESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|222103544|gb|ACM44301.1| small ribosomal protein subunit 4 [Climacium japonicum] Length = 199 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P ++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLIYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|67035590|gb|AAY62726.1| small ribosomal protein subunit 4 [Wilsoniella karsteniana] Length = 194 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSS---SNQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +L+ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQKSQAMILKNVDFSQKSKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|320352938|ref|YP_004194277.1| 30S ribosomal protein S4P [Desulfobulbus propionicus DSM 2032] gi|320121440|gb|ADW16986.1| SSU ribosomal protein S4P [Desulfobulbus propionicus DSM 2032] Length = 209 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR ++ + K RS+ PG HGQ R K S + +QLR Sbjct: 1 MARYTGASCRLCRRENLKMFLKGDRCYSDKCAFERRSFAPGQHGQNRFRKVSDYAVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR F+ A+R++G T L+ LE RLD ++YR+ F + ARQ Sbjct: 61 KQKVKQMYGML-EAQFRRYFERAERAKGVTGETLLIMLERRLDNVLYRSGFASSRDQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H +NG+ VNI S++ GD+I +K+K ++ V++ + A R +P ++ ++ Sbjct: 120 MVRHNLFTLNGKKVNIPSHQVNAGDIIALKEKYQKSEQVIDNLEGAVRRGLPSWLELDQA 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+ +++ P +Q L+VE YS+ Sbjct: 180 KFHCAVKALPNR-EEITMP--IQEQLIVELYSK 209 >gi|3098214|gb|AAC15555.1| small ribosomal protein 4 [Paludella squarrosa] Length = 195 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKYKIPNHLTYNSLKKQGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|67035670|gb|AAY62766.1| small ribosomal protein subunit 4 [Campylopus introflexus] Length = 194 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+ + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRHVLVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHVLVNNYIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K + + + +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQKSQSIIARNLEFSQKYKVPNHLTFNSLEKKGLVNQI---LN 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HESIGLNINELLVVEYYSR 192 >gi|237786335|ref|YP_002907040.1| 30S ribosomal protein S4 [Corynebacterium kroppenstedtii DSM 44385] gi|259495271|sp|C4LKZ2|RS4_CORK4 RecName: Full=30S ribosomal protein S4 gi|237759247|gb|ACR18497.1| 30S ribosomal protein S4 [Corynebacterium kroppenstedtii DSM 44385] Length = 201 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+ +L G + R Y PG G+ R K S + LQL+ KQK + Sbjct: 1 MARYTGPATRKSRRLRVDLVGGD-ANFERRPYPPGQAGRAR-IKESEYLLQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+FR + EA R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-IMEKQFRRYYAEAHRRPGKTGDNLMVLLESRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHDNMVATF 179 VNG+ VN+ S++ + D+I+V++KS+++ EA + LA+ VP ++ V + Sbjct: 118 FTVNGKKVNVPSFQVSQYDIIDVREKSRKMVWFDEAQEALADAVVPAWLQVVPSTLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V +Q L+VEFYS+ Sbjct: 178 HQLPERAQ---IEVPIQEQLIVEFYSK 201 >gi|3914844|sp|O20106|RR4_CYPSP RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292831|emb|CAA92552.1| ribosomal protein S4 [Cypella sp. 'Lejeune 1997'] Length = 194 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHMAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K K + + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKDKERSKVLIQNYIASSSHEELPNHLTIDPLQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|222103426|gb|ACM44242.1| small ribosomal protein subunit 4 [Drepanocladus aduncus] Length = 203 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 6 RGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 61 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN Sbjct: 62 ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 121 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 122 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI- 180 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 181 --LDRESIGLKINELLVVEYYSR 201 >gi|46486580|gb|AAS98726.1| ribosomal protein subunit 4 [Pterobryella praenitens] Length = 200 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 10/206 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKY 61 + + +I RR+G K+P G Q K S + ++L KQK++ + Sbjct: 1 RYRGPRARIIRRLGALPGLTNKTPQLK----SGSINQSISNKKISQYRIRLEEKQKLRFH 56 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + + +++G T L+ LE RLD I++R PTI ARQ VNHRH+ Sbjct: 57 YG-ITERQLLNYVRISRKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHI 115 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN R V+I SYRCK D I +K + K + + ++ +P +++ + Sbjct: 116 LVNDRIVDIPSYRCKLHDFITIKDRQKSQTIINKNIDFYQKYKIPNHLTYSSLEKKGFVN 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 QI---LDRESIGLKINELLVVEYYSR 198 >gi|328541034|gb|AEB21741.1| ribosomal protein S4 [Kurzia sp. Brown 03/140a] Length = 203 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 18/212 (8%) Query: 1 MSKRESSKHKIDRRIGENLWG-----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAK 55 MS KI RR+G +PKS N RS K S + ++L K Sbjct: 1 MSXYRGPXVKIIRRLGALPGLTSRXLKPKSGXNDRS--------TSNKKVSQYRIRLEEK 52 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK++ +YG ++E++ + A R++G T + LE RLD + R TI ARQ Sbjct: 53 QKLRFHYG-LTERQSLKYVRIARRAKGSTGQVSLQLLEMRLDNTILRLGMASTIPEARQL 111 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDN 174 VNHRH+ +N V+I SY C+ GD+I +K+K K + + + L + ++P +++ + Sbjct: 112 VNHRHISINKNIVDIPSYNCEPGDIITIKKKQKSQSVITKNVNLFQNLEIPSHLTFDLIK 171 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + R ++ + + LVVE+YSR Sbjct: 172 LCGSINR---TINRESIDLKINELLVVEYYSR 200 >gi|328463108|gb|EGF34871.1| 30S ribosomal protein S4 [Lactobacillus rhamnosus MTCC 5462] Length = 203 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G +L G K + R Y PG HG + K S +G QLR KQK++ Sbjct: 1 MSRYTGPRWKQSRRLGLSLSGTGKE-LARRPYAPGDHGANNRRKISEYGQQLREKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++F+++F A + + G N + LE+RLD +V+R + ARQ VNH Sbjct: 60 MYG-LNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ ++I SY + G VI ++++S+ LA V EA + P Y++ + + + Sbjct: 119 HITVDGKRLDIPSYEVQLGQVIGLRERSQNLAVVNEAIENTVSR-PAYVTFDDNKKEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 VR+P + P + +LVVE+Y Sbjct: 178 VRLPERGELEP---EVDESLVVEYY 199 >gi|28194855|gb|AAO33689.1|AF481044_1 ribosomal protein S4 [Eucladium verticillatum] Length = 196 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRQKSQIMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|28194815|gb|AAO33669.1|AF481024_1 ribosomal protein S4 [Tortula muralis] gi|28194817|gb|AAO33670.1|AF481025_1 ribosomal protein S4 [Tortula muralis] gi|28194819|gb|AAO33671.1|AF481026_1 ribosomal protein S4 [Tortula muralis] gi|28194821|gb|AAO33672.1|AF481027_1 ribosomal protein S4 [Tortula muralis] Length = 196 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGILPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|77019139|emb|CAH60176.1| chloroplast 30S ribosomal protein S4 [Grimmia cribrosa] Length = 195 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKTKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRV 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQAMIIKNMDFPQKYKIPNHLTFNSLENKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DHEAIGLKINELLVVEYYSR 193 >gi|323148832|ref|YP_004221925.1| ribosomal protein S4 [Erodium carvifolium] gi|316926296|gb|ADU58149.1| ribosomal protein S4 [Erodium carvifolium] Length = 201 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 17/211 (8%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K R+G K P P R K S + +L KQK++ Sbjct: 1 MSRYRGPRFKKICRLGALPGLTSKEP--RDPTPP------RFKKKSQYHTRLEEKQKLRF 52 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 53 HYG-LTERQLLKYVRIAGKAKGPTGEVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRH 111 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-----SQLAERDVPEYISVNHDNM 175 +LVNGR V+I SYRCK D+I ++K K + + R + +++ Sbjct: 112 ILVNGRIVDIPSYRCKPRDIITAREKEKSRTLIQNYLQNSLNSSPRRKLANHLTTQPLQY 171 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 172 KGLVNQIIDSK---WVGLKINELLVVEYYSR 199 >gi|118626119|emb|CAL39359.1| small ribosomal protein 4 [Odontoschisma denudatum] Length = 202 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGALPGLTSKTLKSKSSYS---DRSTSNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD V+R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + +N ++I SY K GD+I +K K K + + + L ++ +P +++ + + + Sbjct: 117 ISINNDIIDIPSYDRKPGDIITIKDKQKSRSIITKNVNLFQKFKIPSHLTFDLTQLQGSV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + + LVVE+YSR Sbjct: 177 NQIVNR---EWVNLKINELLVVEYYSR 200 >gi|12642240|gb|AAK00202.1| rps4 [Gigaspermum repens] Length = 194 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGVLPGLTNKTPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T + LE RLD +++R TI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVSLQLLEMRLDNVIFRLGMALTIPEARQLVNHRHILVNDCMV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + +++ VP +++ N + L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAMITKNIDFSQKSKVPNHLTFNSLQKKGLVNQX---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|27262234|gb|AAN87398.1| SSU ribosomal protein S4 [Heliobacillus mobilis] Length = 208 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + K V+ R+Y PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGPVCRLCRREGAKLYLKGDRCYTGKCAVDRRTYAPGQHGQGRK-KISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I E +FR+ F +ADR +G T HNL+ LE RLD +V+R F + ARQ Sbjct: 60 KQKARRIYG-ILEGQFRTYFSKADRQQGITGHNLLRLLERRLDNVVFRLGFARSRNEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHD 173 FV H H +NG VNI S + + GDVI++K+KSK E + L ++ P ++ ++ + Sbjct: 119 FVLHNHFTLNGHKVNIASIQLRVGDVIQLKEKSKDTPLFKEIVASLGQKTPPAWLELDVN 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ V +P+ +Q +L+VE YSR Sbjct: 179 NLSGRVVALPNR---EDIDTTVQEHLIVELYSR 208 >gi|67035847|gb|AAY62850.1| small ribosomal protein subunit 4 [Pterogoniopsis cylindrica] Length = 199 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---SNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ N +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIDLKINELLVVEYYSR 197 >gi|87122791|ref|ZP_01078664.1| 30S ribosomal protein S4 [Marinomonas sp. MED121] gi|86161956|gb|EAQ63248.1| 30S ribosomal protein S4 [Marinomonas sp. MED121] Length = 206 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYG---PGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L + S + ++ PG+HG R+ + S +GLQLR KQ Sbjct: 1 MARYIGPTCKLSRREGTDLQLKSGSRALESKCKAETVPGVHG-ARRGRLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR+ +K+A R +G T NL+ LESRLD +VYRA F T +RQ V Sbjct: 60 KVRRIYG-VLEKQFRNYYKDAARGKGATGENLLQLLESRLDNVVYRAGFGATRAESRQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPE-YISVNHDNM 175 H+ + VNG +VNI SY+ K GDV+ V++K+K+ + A +L++ ++ + + Sbjct: 119 AHKGIQVNGATVNIASYQVKAGDVVSVREKAKKQLRIQNAIELSKNRTSTHWVETDATKL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 A F P + NL+VE YS+ Sbjct: 179 EAVFKAAPER---SDLSAEINENLIVELYSK 206 >gi|21914146|gb|AAM81295.1| ribosomal protein subunit 4 [Anomobryum conicum] Length = 198 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NRIVNIPSYRCKPEDSITIKDRPKSQAIISKNLNLYQKYKTPNHLTYNFLKKNGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|67035556|gb|AAY62709.1| small ribosomal protein subunit 4 [Aloinella cucullifera] Length = 195 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P+ S+ + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGILPXLTHKTPLLKSSF---TNQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE R D +++R PTI ARQ VNH+H+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHKHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ + +++ VP +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSRAMIIKNVEFSQKSKVPNHLTFNSLEKKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|66866218|gb|AAY57781.1| small ribosomal protein 4 [Cryptopodium bartramioides] Length = 207 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 13/212 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M + +I RR+G K+P + + K S + ++L KQK++ Sbjct: 1 MPGYRGPRVRIIRRLGVLPGLTNKTPQVKSNSI---NQSTSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDN 174 +LVN R VNI SYRCK D I +K + K + + ++ +P +++ N Sbjct: 117 ILVNDRIVNIPSYRCKPQDFITIKDRQKYQTIIXXXXXXKNIDFCQKYKIPHHLTYNSLE 176 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 KKGLVNQI---LDRESIALKINELLVVEYYSR 205 >gi|154249790|ref|YP_001410615.1| 30S ribosomal protein S4 [Fervidobacterium nodosum Rt17-B1] gi|171769361|sp|A7HM25|RS4_FERNB RecName: Full=30S ribosomal protein S4 gi|154153726|gb|ABS60958.1| RNA-binding S4 domain protein [Fervidobacterium nodosum Rt17-B1] Length = 209 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K+ RR G L+ + K P + R + PG HG+ K K + + LQLRA Sbjct: 1 MARNTGPLCKLCRREGMKLYLKGERCFSEKCPFDKRPFAPGQHGRE-KKKLTQYALQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ MK+ YG + EK+FR ++ A + GDT NL++ +E RLD +VYR F AARQ Sbjct: 60 KQTMKRIYG-VLEKQFRIYYERAVKQSGDTRENLVAQVERRLDNVVYRLGFAINRRAARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V+H HVLVNG+ V+I SY+ + GDVI +K+ S+ + + +A +L + R + ++ V++D Sbjct: 119 LVSHGHVLVNGKKVDIPSYQVRPGDVISIKEGSRTIEPIKQAIELNKGRAISNWLEVDYD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +VR P + + PV +Q +VEFYSR Sbjct: 179 QFKGVYVRNPKLEEIIDLPVNVQA--IVEFYSR 209 >gi|238855293|ref|ZP_04645612.1| ribosomal protein S4 [Lactobacillus jensenii 269-3] gi|256850911|ref|ZP_05556300.1| ribosomal protein S4 [Lactobacillus jensenii 27-2-CHN] gi|260661125|ref|ZP_05862039.1| ribosomal protein S4 [Lactobacillus jensenii 115-3-CHN] gi|260664651|ref|ZP_05865503.1| ribosomal protein S4 [Lactobacillus jensenii SJ-7A-US] gi|282932414|ref|ZP_06337839.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] gi|282934177|ref|ZP_06339455.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] gi|313471896|ref|ZP_07812388.1| ribosomal protein S4 [Lactobacillus jensenii 1153] gi|238832185|gb|EEQ24503.1| ribosomal protein S4 [Lactobacillus jensenii 269-3] gi|239529185|gb|EEQ68186.1| ribosomal protein S4 [Lactobacillus jensenii 1153] gi|256615973|gb|EEU21161.1| ribosomal protein S4 [Lactobacillus jensenii 27-2-CHN] gi|260548062|gb|EEX24038.1| ribosomal protein S4 [Lactobacillus jensenii 115-3-CHN] gi|260561716|gb|EEX27688.1| ribosomal protein S4 [Lactobacillus jensenii SJ-7A-US] gi|281301791|gb|EFA94057.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] gi|281303363|gb|EFA95540.1| ribosomal protein S4 [Lactobacillus jensenii 208-1] Length = 203 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G+QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGEHGPNNRGRLSEYGMQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + +G+ N + LE RLD IVYR T ARQ VNH Sbjct: 60 MFG-LNERQFRNLFNRAGKIRQGEHGTNFMVLLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + + + Sbjct: 119 HILVDGKRVDIPSYEVKVGQEISLKEKSKNLQQVKDALE-AVVSRPSFVSFDENKLTGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EINEALVVEYYNK 201 >gi|167771240|ref|ZP_02443293.1| hypothetical protein ANACOL_02598 [Anaerotruncus colihominis DSM 17241] gi|167666491|gb|EDS10621.1| hypothetical protein ANACOL_02598 [Anaerotruncus colihominis DSM 17241] Length = 206 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR + L+ + K V R+ PG HG+ R K S +G+QLRA Sbjct: 1 MARYTGAVCRLCRRENKKLFLKGERCYTDKCAVTRRATVPGQHGKARTRKASEYGVQLRA 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ+ ++YYG I E +F F+ A G T NL+ ESRLD +VYR F + ARQ Sbjct: 61 KQQARRYYG-ILESQFSKYFEMAAAKSGVTGENLLRICESRLDNVVYRLGFAASRKEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H VNG+ NI S K GDV+ V KS ++ V+EA R V ++ N N Sbjct: 120 LVRHGHFTVNGKKANIPSILLKAGDVVAVASKSDKIKGVVEA--FGSRPVARWLECNKTN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M + +P+ + ++ +L+VE YS+ Sbjct: 178 MTGRVIELPNR---EDIDLDVEEHLIVELYSK 206 >gi|328541138|gb|AEB21793.1| ribosomal protein S4 [Telaranea tetrapila] Length = 198 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G K +Y K S + ++L KQK++ +YG + Sbjct: 1 GPRVKVIRRLGAPPGLTSKILKPKSNYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+L+N Sbjct: 57 TERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHILINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C+ GDVI +K K + + + + L + +P +++ + + + + Sbjct: 117 NIVDIPSYDCESGDVITIKDKQRSRSIITKNINLFQNLKIPSHLTFDSIKLCGSINQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 174 TINREWINLKINELLVVEYYSR 195 >gi|63078624|gb|AAY29398.1| ribosomal protein S4 [Tortella fragilis] Length = 197 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKIPHLKSSS---TNQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKFKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQESIGLKINELLVVEYYSR 195 >gi|157689550|gb|ABV65331.1| ribosomal protein S4 [Reseda lutea] Length = 195 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P R L Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTSKRPRAGR----DLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMSLTIPQARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I VK + K + A ++P++++++ +I Sbjct: 116 IVDIPSYRCKPRDIITVKNEQKSRTLIQNFLDSSAAEELPKHLTLHTFQYEGLVNQIIDR 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---CIGLKINELLVVEYYSR 193 >gi|121761859|gb|ABM65015.1| ribosomal protein S4 [Plagiomnium rhynchophorum] Length = 199 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGALPGPTNKTPQLKSSSI---NHSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E+R D I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPETRSDNIIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R ++I SYRCK D I +K + K + + ++ +P++++ N N +I Sbjct: 117 NDRLIDIPSYRCKPQDFITIKDRQKSQIMISKNIDFYQKYKIPDHLTYNSLNKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRDFIDLKINELLVVEYYSR 197 >gi|11228660|gb|AAG33115.1| small ribosomal protein 4 [Orthodicranum fulvum] Length = 191 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 LNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A +++ +++ +P +++ + +I L Sbjct: 116 PSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQI---LDQE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|75858232|gb|ABA28690.1| small ribosomal protein 4 [Gyrothyra underwoodiana] Length = 191 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKILKSKSSYI---DRSSSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVYIARKTKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHRHISINNNIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I VK K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDPVELQGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|80974154|gb|ABB53770.1| small ribosomal subunit protein 4 [Garovaglia powellii] Length = 202 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G RS K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGT-LPGLTNKIPQVRSSSINQ--STSNKKISQYRVRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + + A +++G T + LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-ITERQLLNYVRIARKTKGSTGEVSLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN VNI SYRCK DVI VK + + + ++ +P +++ Sbjct: 117 IFVNDCIVNIPSYRCKPQDVIIVKNEKNSEGVINKNEDFHQKYKIPNHLTYIFLEKKGLV 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 177 NKI---LDRESIGLKINELLVVEYYSR 200 >gi|67035990|gb|AAY62921.1| small ribosomal protein subunit 4 [Dicladiella cubensis] Length = 199 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 2 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 57 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN Sbjct: 58 ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 117 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 118 DCMVDIPSYRCKPQDFITIKNQRKSETIIGKNIEFYQKYKIPNHLTYSSLEKKGLVNQI- 176 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 --LDRESIGLKINELLVVEYYSR 197 >gi|67035740|gb|AAY62801.1| small ribosomal protein subunit 4 [Timmiella anomala] Length = 191 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D + +K + K A +++ + ++ VP +++ N +I L Sbjct: 117 SYRCKPQDFVTIKDRQKSQAIIIKNIEFFQKYKVPSHLTFNSLQKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|77019199|emb|CAH60205.1| chloroplast 30S ribosomal protein S4 [Grimmia pulvinata] Length = 195 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K + +++ +++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQSMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DHESIGLKINELLVVEYYSR 193 >gi|326803755|ref|YP_004321573.1| ribosomal protein S4 [Aerococcus urinae ACS-120-V-Col10a] gi|326650742|gb|AEA00925.1| ribosomal protein S4 [Aerococcus urinae ACS-120-V-Col10a] Length = 203 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 8/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSK-PSYFGLQLRAKQKMK 59 MS+ K RR G +L G K + R Y PG HG ++ K S +GLQL+ KQK++ Sbjct: 1 MSRYTGPSWKKSRRYGISLSGTGKE-LARRPYAPGQHGPNQRRKSLSEYGLQLQEKQKLR 59 Query: 60 KYYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNH 118 YG ++EK+F +++ A++ + G N ++ LE RLD +VYR T ARQ V+H Sbjct: 60 FIYG-LTEKQFHNLYNRAEKIKEGTVGTNFMTLLEQRLDNMVYRLGLASTRRQARQLVSH 118 Query: 119 RHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVAT 178 H+ V+G+ V+I SY + G VI V++KSK L + ++ + VP Y+ + D + + Sbjct: 119 GHITVDGKRVDIPSYIVEVGQVIGVREKSKNLQVIKDSVEGLYGHVP-YVEFDADKLEGS 177 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P + + +LVVE+Y Sbjct: 178 LSRLPERDE---MNQEIDESLVVEYY 200 >gi|63078648|gb|AAY29410.1| ribosomal protein S4 [Oxystegus tenuirostris] Length = 197 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPNLKSSS---TSQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQELIGLKINELLVVEYYSR 195 >gi|22854715|gb|AAN09777.1| small ribosomal protein 4 [Kiaeria starkei] Length = 191 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K +++ +++ VP +++ + +I L Sbjct: 117 SYRCKPQDFITIKNRQKSQTMIIKNVDFSQKAKVPNHLTFHSLEKKGLVNQI---LDQES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|63191811|gb|AAY34865.1| small ribosomal protein subunit 4 [Bellibarbula recurva] Length = 199 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLPGLSNKIPDLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I + + K V + +++ +P +++ N ++ Sbjct: 117 NNRIVNIPSYRCKPQDFITINDRKKSQVMVTKNVDFSQKSKIPNHLTFNSLEKKGLINQV 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|49182736|gb|AAT57830.1| small ribosomal protein [Jungermannia crenuliformis] Length = 195 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGTLPGLTGKTLKPKSSYI---DRSSSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ VN Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + ++ Sbjct: 117 VDIPSYSCQLGDIITVKNKQKSQSMITKNINLFQKLKIPSHLTFDSIELRGYVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|46811002|gb|AAT01819.1| small ribosomal protein 4 [Fossombronia angulosa] Length = 197 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G + Y L K S + ++L KQK++ +YG + Sbjct: 1 GPRAKMIRRLGVLPGLTDRIIEPKSGYTSQL---VSNKKMSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LV+ Sbjct: 57 TERQLLKYVRVARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVDD 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +VNI SY CK GDVI V+ + K + + ++ L ++ P +++++ + + + Sbjct: 117 DTVNIPSYSCKPGDVITVRNRQKSQSIIAKSMSLLQKPKTPNHLTLDSTRLRGSINQTID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 RD---WINLKINELLVVEYYSR 195 >gi|42556514|gb|AAS19852.1| small ribosomal protein 4 [Tritomaria quinquedentata] Length = 190 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 RRLGALPGLTNKTLKSKSSYI---DRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLLK 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 Y C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 YNCEPGDIITIRNKRKSQSIITKNLNLFQKMKIPSHLTFDLTQLQGSVNQ---TVNREWV 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NLKINELLVVEYYSR 188 >gi|67036032|gb|AAY62942.1| small ribosomal protein subunit 4 [Aerolindigia capillacea] Length = 199 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D + +K + K + + + ++ +P +++ + + Sbjct: 116 VNDGIVDIPSYRCKPQDFVTIKNQRKSENIISKNMEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|67035907|gb|AAY62880.1| small ribosomal protein subunit 4 [Palustriella falcata] Length = 199 Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ E+RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLPETRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKSQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|42556520|gb|AAS19855.1| small ribosomal protein 4 [Zoopsis argentea] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNDNIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIIMIRDKQKSQSMITKNINLFQNLKIPSHLTFDSTKLCGSINQ---TINRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IHLKINELLVVEYYSR 189 >gi|67035704|gb|AAY62783.1| small ribosomal protein subunit 4 [Schistidium apocarpum] Length = 194 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSLI---NQSTSSKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---LN 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HESIGLKINELLVVEYYSR 192 >gi|20531064|gb|AAM27354.1| ribosomal protein 4 [Polytrichadelphus aristatus] Length = 192 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPXXKSGYI---NQQTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R+ G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 LNYVRXARRAXGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDSIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + A ++ +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKDRQESQAIIIRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIDLKINELLVVEYYSR 190 >gi|63078646|gb|AAY29409.1| ribosomal protein S4 [Oxystegus tenuirostris] Length = 197 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPNLKSSS---TSQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQIVD 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 Q---ELIGLKINELLVVEYYSR 195 >gi|17025822|gb|AAL32078.1| ribosomal protein 4 [Syrrhopodon apertus] Length = 199 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGT-LSGLTNKISQLKSSSINQ--STPNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKIKGSTGKVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ + + + +P +++ N +I Sbjct: 117 NNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKHKIPNHLTFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|157689434|gb|ABV65273.1| ribosomal protein S4 [Cannabis sativa] Length = 198 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 10/204 (4%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + K RR+G K P G L Q R K S + ++L KQK++ +YG Sbjct: 1 RGPRFKKIRRLGALPGLTSKKP----RAGSDLRNQLRPGKKSQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN Sbjct: 56 LTEEQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYISVNHDNMVATFVRI 182 R V+I SYRCK D+I V+ + K+ S+++ ++P+++++N + +I Sbjct: 116 NRMVDIPSYRCKPRDIITVRDEQKKSKSLVQNYLDSSIREELPKHLTLNPFQYQGSVNQI 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 S + + LVVE+YSR Sbjct: 176 IDSK---WVGLKINELLVVEYYSR 196 >gi|67035988|gb|AAY62920.1| small ribosomal protein subunit 4 [Neodicladiella pendula] Length = 199 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T + E RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVSLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 NDCMVDIPSYRCKPQDFITIKNQRKSETIIGKNIEFYQKYKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|307683687|dbj|BAJ19822.1| ribosomal protein S4 [Picea morrisonicola] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ K P N + + K S + ++ KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSKRPKNRKDSM----NRSSSRKISQYRIRPEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE R D I+++ PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRSDNILFQLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRDIIRKNLDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WISLKINELLVVEYYSR 199 >gi|42556478|gb|AAS19834.1| small ribosomal protein 4 [Pedinophyllum truncatum] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTFKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNGIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD I ++ K + + + + + L ++ +P +++ + + + ++ Sbjct: 117 SYNCEPGDTITIRNKQRSQSIITKNTNLFQKIKIPSHLTFDLTQLRGFVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|63191773|gb|AAY34846.1| small ribosomal protein subunit 4 [Polytrichastrum alpinum] Length = 194 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R V Sbjct: 57 QLLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + A + ++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQESQAIIARNIDFSQNYKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESINLKINELLVVEYYSR 192 >gi|227345129|gb|ACP28117.1| small ribosomal protein 4 [Chiloscyphus spinifer] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLSSKTLKPKSSYI---DRSTLNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITIRDKDKSQSMITKNINLFQKLKIPSHLTFDSIKLQGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|157689518|gb|ABV65315.1| ribosomal protein S4 [Manihot esculenta] Length = 193 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P G L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKRP----RVGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-VTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKYVRIAAKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I + + K A + + + ++P++++++ +I S Sbjct: 116 DIPSYRCKPRDIITARDEQKSRAMIQNDLDSSPQEELPKHLTLHPFQYKGLVNQIIDSK- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WVGLKINELLVVEYYSR 191 >gi|49182738|gb|AAT57831.1| small ribosomal protein [Lejeunea cladogyna] Length = 192 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 11/200 (5%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K L K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGSLPGLTSKISKTK------LDRSALNKKISQYRIRLEEKQKLRFHYG-LTE 53 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++ PTI ARQ VNHRH+ +N Sbjct: 54 RQLLKYVRIARKTKGSTGQVLLQLLEMRLDNTIFSLGMAPTIPNARQLVNHRHIFINDCI 113 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SY CK GD+I +K K K + + + L+++ +P +++ + + + ++ Sbjct: 114 VNIPSYNCKPGDIITIKNKEKSQSIINKNINLSQKLQIPNHLTFDSTKLQGLVNQ---TI 170 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 171 RREWIDLKINELLVVEYYSR 190 >gi|37960587|gb|AAP70663.1| small ribosomal protein 4 [Sphagnum cymbifolioides] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + +Y + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTSKTPQSKSNYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFISIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|28194785|gb|AAO33654.1|AF481009_1 ribosomal protein S4 [Tortula brevissima] Length = 196 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMISKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|157689568|gb|ABV65340.1| ribosomal protein S4 [Swietenia macrophylla] Length = 193 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P G L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKYVRIAGKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I + K A + + ++P++++++ +I S Sbjct: 116 DIPSYRCKPRDIITARDDQKSRALIPNYLDSSHPEELPKHLTLHAFQYKGLVNQIIDSK- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WVGLKINELLVVEYYSR 191 >gi|157689528|gb|ABV65320.1| ribosomal protein S4 [Nitraria retusa] Length = 193 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P G L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKRP----RTGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKYVRIAGKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I + K A + + ++P++++++ +I S Sbjct: 116 DIPSYRCKPQDIITARDDHKSRALIQTYLDSSHHEELPKHLTLHVSQYKGLVNQIIDSK- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WVGLKINELLVVEYYSR 191 >gi|49182686|gb|AAT57805.1| small ribosomal protein [Cephalozia catenulata] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + +Y K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGVLPGLTSKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNNDM 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 ++I SY C+ GD+I ++ K K + V + L ++ +P +++ + + + ++ + Sbjct: 117 IDIPSYNCEPGDIITIRNKEKSKSLVTKNINLFQKLKMPSHLTFDPIQLQGSVNQMVNR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EGVNLKINELLVVEYYSR 193 >gi|3098224|gb|AAC15560.1| small ribosomal protein 4 [Rhacocarpus purpurascens] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+L+N R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILINDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I VK + K A + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITVKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLKKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRELIGLKINELLVVEYYSR 193 >gi|3098204|gb|AAC15550.1| small ribosomal protein 4 [Splachnum luteum] Length = 198 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P +S K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTP-QLKSSPINQ--STSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A ++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARHAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P ++ N +I Sbjct: 117 EHIVDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKYKIPNHLIYNSLKKQGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRQSIGLKINELLVVEYYSR 196 >gi|37992437|gb|AAR06397.1| small ribosomal protein 4 [Callicostella diatomophila] Length = 198 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 RGPCVKIIRRLGVLPGLTNKIPELKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ +NHRH+LVN Sbjct: 57 ITEQQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLINHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ N +I Sbjct: 117 DYIVDIPSYRCKPQDFITIKNQQKSEAIINKNIEFYQKMKIPNHLTYNFLEKKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRDSIGLKINELLVVEYYSR 196 >gi|63191653|gb|AAY34788.1| small ribosomal protein subunit 4 [Rhytidium rugosum] gi|63191655|gb|AAY34789.1| small ribosomal protein subunit 4 [Dimerodontium balansae] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNQQKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIDLKINELLVVEYYSR 193 >gi|299138173|ref|ZP_07031353.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX8] gi|298600103|gb|EFI56261.1| ribosomal protein S4 [Acidobacterium sp. MP5ACTX8] Length = 210 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 118/214 (55%), Gaps = 12/214 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLR 53 M++ ++ RR G L+ + K PV R++ PG HGQ +K K +GLQLR Sbjct: 1 MARYTGPVCRLCRRDGTKLFLKGPKCFTDKCPVEKRNFPPGQHGQSKKQKKVVGYGLQLR 60 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK K+ Y + E +FR+ +++A G T L+ LE+RLD + YR F + AR Sbjct: 61 EKQKAKRIYFTL-ETQFRAYYEKAANRPGVTGELLLQQLETRLDNVCYRLGFALSRRQAR 119 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNH 172 Q V H HV VNGR VNI S++CK GD I +++ SK+L + + L+ ++ +I N Sbjct: 120 QVVRHGHVQVNGRKVNIPSFQCKIGDEIAIREGSKKLVLLEASQDFLSGQNRVGWIDANR 179 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +N+ + +P +DV PV L+VE YS+ Sbjct: 180 ENLSGKIIALPKR-EDVNLPV--NEQLIVELYSK 210 >gi|49182746|gb|AAT57835.1| small ribosomal protein [Lepidozia reptans] Length = 196 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K+ RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKVIRRLGAPPGLTSKTLKPKSSYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD + R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTILRLGMASTIPGARQLVNHRHISINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I ++ K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIRDKQKSRSIITKNVNLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|83940939|gb|ABC48866.1| rps4 [Sinojackia huangmeiensis] gi|83940941|gb|ABC48867.1| rps4 [Sinojackia rehderiana] gi|83940943|gb|ABC48868.1| rps4 [Sinojackia microcarpa] gi|83940949|gb|ABC48871.1| rps4 [Sinojackia xylocarpa] Length = 194 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P+ G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRPIA----GTDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGHI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I + + K A + + + ++P+++++ +I S Sbjct: 116 VDIPSYRCKPRDIITARDEQKSRALIQNSFDSSHHEELPKHLTLYPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|121761724|gb|ABM64949.1| ribosomal protein S4 [Plagiomnium medium] gi|121761738|gb|ABM64956.1| ribosomal protein S4 [Plagiomnium medium] gi|121761752|gb|ABM64963.1| ribosomal protein S4 [Plagiomnium medium] gi|121761781|gb|ABM64977.1| ribosomal protein S4 [Plagiomnium medium] gi|121761787|gb|ABM64980.1| ribosomal protein S4 [Plagiomnium medium] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|20531115|gb|AAM27378.1| ribosomal protein 4 [Leiomela bartramioides] Length = 194 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMASTIPRARQLVNHRHILVNDHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + ++ ++P +++ N +I L Sbjct: 117 DIPSYRCKPHDFITIKDRQKSQTIISKNIDFYQKYEIPNHLTYNSSENKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|114330597|ref|YP_746819.1| 30S ribosomal protein S4 [Nitrosomonas eutropha C91] gi|122314409|sp|Q0AIH2|RS4_NITEC RecName: Full=30S ribosomal protein S4 gi|114307611|gb|ABI58854.1| SSU ribosomal protein S4P [Nitrosomonas eutropha C91] Length = 208 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K + RR GE L+ + K P+ R+Y PG HGQ RK++ S + +QLR Sbjct: 1 MARNINPKCRQCRREGEKLFLKGDKCFSDKCPIERRNYPPGQHGQ-RKTRLSDYAVQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR+++K ADR +G T NL+ LESRLD + Y F + ARQ Sbjct: 60 KQKIRRIYG-LLENQFRNVYKRADRQKGITGENLLKLLESRLDNVAYNMGFGASRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 + H +L+NG+ NI S GD IEV + +K + + +LA+ R +P ++ V+ D Sbjct: 119 IIRHDCILLNGKKANIPSQLIGPGDQIEVAEHAKSYLRIKSSIELAKRRSIPSWLEVDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N+ + P + +LVVE YS+ Sbjct: 179 NLKGLYKNKPDR---SDLSSTINESLVVELYSK 208 >gi|37992681|gb|AAR06519.1| small ribosomal protein 4 [Squamidium leucotrichum] Length = 199 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D + +K + K + + + ++ +P +++ + Sbjct: 116 VNECIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKYKIPNHLTYIFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|75858230|gb|ABA28689.1| small ribosomal protein 4 [Delavayella serrata] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKVLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I VK K K + + + L ++ +P ++ + N+ + + ++ Sbjct: 117 SYNCEPGDIITVKNKQKSQSIITKNINLFQKSKIPSHLIFDSTNLSGSVNQ---TINRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|77862517|gb|ABB04531.1| small ribosomal protein 4 [Conocephalum conicum] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K+ + Y + K S + ++L KQK++ ++G Sbjct: 4 RGPRVKIIRRLGALPGLTNKTLKSKSGYI---NQSISNKKVSQYRIRLEEKQKLRFHFG- 59 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N Sbjct: 60 LTERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILIN 119 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 +V+I SY CK DVI +K + K + + + + ++ +P ++S + + +I Sbjct: 120 NITVDIPSYNCKPKDVITIKDRQKSQSIITKNLKSFQKSKIPNHLSFDLIQIKGLVNQII 179 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 180 DR---EWIYLKINELLVVEYYSR 199 >gi|18920787|gb|AAL82438.1| ribosomal protein system 4 [Rhizofabronia perpilosa] Length = 197 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPKLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + + + + ++ +P +++ + +I Sbjct: 117 FIVDIPSYRCKPQDFITIKNQRNSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|228017217|gb|ACP52037.1| ribosomal protein S4 [Pinus leiophylla var. chihuahuana] Length = 201 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+ N + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRLKIIRRLKXXXGLXXXXXXNRK----DXMNRSSSRKISQYRIRLEEKQKLRY 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A R++G T L+ LE RLD I++R PTI ARQ VNH H Sbjct: 57 HYG-LTERQLLKYVRIARRAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHGH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VN V+I SY CK DVI ++ + + A + + L +R +P +++ + Sbjct: 116 IRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIKKNIDLFQRDKLPNHLTFHSLQYKGFI 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 NQIIDSK---WINLKINELLVVEYYSR 199 >gi|222103458|gb|ACM44258.1| small ribosomal protein subunit 4 [Pleurozium schreberi] Length = 197 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P ++ K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGILPGLTNKTPQLK---ASSINQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L LE RLD +++R PTI ARQ VNH H+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLSQLLEMRLDNVIFRLGMAPTIPGARQLVNHTHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKNQRKSETIIGKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|121761730|gb|ABM64952.1| ribosomal protein S4 [Plagiomnium drummondii] gi|121761744|gb|ABM64959.1| ribosomal protein S4 [Plagiomnium ciliare] gi|121761796|gb|ABM64984.1| ribosomal protein S4 [Plagiomnium ciliare] gi|121761810|gb|ABM64991.1| ribosomal protein S4 [Plagiomnium ciliare] gi|121761812|gb|ABM64992.1| ribosomal protein S4 [Plagiomnium ciliare] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|225849518|ref|YP_002729683.1| 30S ribosomal protein S4 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644198|gb|ACN99248.1| ribosomal protein S4 [Sulfurihydrogenibium azorense Az-Fu1] Length = 204 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMK 59 M + K+ RR+G + G R++ PG HG+ + + K S +G++L+ KQK+K Sbjct: 1 MGRYIGPLTKVSRRLGVFIGG-DLESFQKRNFPPGQHGRTQGRKKLSDYGVRLQEKQKLK 59 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E +FR F+EA + G+T L+ LE RLD +VYR F T ARQ V H Sbjct: 60 FLYGGLRESQFRRYFEEASKKAGNTGVVLLQLLERRLDNVVYRLGFAKTRQQARQLVKHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVAT 178 H VNG+ V+I SYR GD+IEV++KSK+LA E + + R +P+++ ++ +NM Sbjct: 120 HFTVNGKKVDIPSYRVDAGDIIEVREKSKKLAIFKENLENRDPRSIPKWLELDKENMRGK 179 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYS 205 V +++ + + ++EFYS Sbjct: 180 VV---EIPEEIELEIPVNVQYIIEFYS 203 >gi|121761722|gb|ABM64948.1| ribosomal protein S4 [Mnium spinulosum] Length = 195 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIDLKINELLVVEYYSR 193 >gi|63078573|gb|AAY29373.1| ribosomal protein S4 [Eucladium verticillatum] Length = 196 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKTPHLK---FSSTNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVSIPSYRCKPQDFISIKDRQKSQIMITKNVDFSQKSKIPNHLTFNSIEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|42556498|gb|AAS19844.1| small ribosomal protein 4 [Scapania undulata] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGSLPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I + K K + + + L ++ +P +++ + + + ++ Sbjct: 117 SYNCEPGDIITIGNKQKSQSIITKNLNLFQKLKIPSHLTFDLAQLQGYVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|26399170|sp|Q9FSD9|RR4_PELNE RecName: Full=30S ribosomal protein S4, chloroplastic gi|10933881|emb|CAC14050.1| small ribosomal protein 4 [Pellia neesiana] Length = 200 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 8/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G + S G K S + ++L KQK++ Sbjct: 1 MSRYRGPRTKIIRRLGA-LPGLTSKILELESGYIGQ--STPNKKVSQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L LE RLD I++R PTI ARQ VNHRH Sbjct: 58 HYG-LTERQLLKYVRIARKAKGSTGQILSQTLEMRLDNIIFRLGMSPTIPGARQLVNHRH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +L+N +V+I SY C+ DVI V + K+ + + VP +++ + + Sbjct: 117 ILINDNTVDIPSYNCEPKDVITVNNR-KESVIIKNMDSSRKPKVPNHLTFDSIRFRGSVN 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 + ++ + + LVVE+YSR Sbjct: 176 Q---TIDRECIDLKINELLVVEYYSR 198 >gi|258622736|ref|ZP_05717754.1| 30S ribosomal protein S4 [Vibrio mimicus VM573] gi|262166593|ref|ZP_06034330.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus VM223] gi|258584924|gb|EEW09655.1| 30S ribosomal protein S4 [Vibrio mimicus VM573] gi|262026309|gb|EEY44977.1| SSU ribosomal protein S4p (S9e) [Vibrio mimicus VM223] Length = 202 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 124/207 (59%), Gaps = 10/207 (4%) Query: 5 ESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQK+++ Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQKVRR 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V+H+ Sbjct: 60 IYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKA 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG+ VN+ S+ DV+ +++K+K+ + + A ++A +R+ P +I V+ + M TF Sbjct: 119 ILVNGKVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDVNTMEGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + L+VE YS+ Sbjct: 179 KRLPER---SDLSADINEQLIVELYSK 202 >gi|20531120|gb|AAM27380.1| ribosomal protein 4 [Timmia megapolitana] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V+I Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLNMAPTIPGARQLVNHRHILVNDHIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQKSQAIIMKNIDFSQKYKVPNHLTFNSLQKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|118626003|emb|CAL41739.1| small ribosomal protein 4 [Lethocolea congesta] Length = 191 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY H K K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKALKPKSSYI--DHSTSNK-KVSQYRIRLEEKQKLRFHYG-VTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE R D I++R PTI ARQ VNH H+ +N V+I Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRPDNIIFRLXMAPTIPGARQLVNHGHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GDVI VK K K + ++ L +R VP +++ + + + + ++ Sbjct: 117 SYSCQPGDVISVKNKQKSQSMIIRNINLFQRLKVPGHLTFDSAELQGSVNQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IDLKINELLVVEYYSR 189 >gi|67035941|gb|AAY62897.1| small ribosomal protein subunit 4 [Leptodon longisetus] Length = 199 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A R++G T L+ E R D +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARRAKGSTGEVLLQLPEMRSDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + +L ++ +P +++ + +I Sbjct: 117 NDCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|3098202|gb|AAC15549.1| small ribosomal protein 4 [Tetraplodon mnioides] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLK---SSSTNQSTANKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH++VN R Sbjct: 57 RQLLNYVRTARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIIVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQAIISKNIEFYQKYKIPNHLTYNSLQKQGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|37548879|gb|AAO32708.1| ribosomal protein 4 [Polytrichastrum longisetum] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VN Sbjct: 58 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVN 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 118 IPSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESIGLKINELLVVEYYSR 192 >gi|18920791|gb|AAL82440.1| ribosomal protein system 4 [Struckia argentata var. zerovii] Length = 197 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITMKNQRKSEAIINKNIEFYQKYKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|146261565|gb|ABQ15092.1| ribosomal protein S4 [Hamamelis japonica] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRP----RTGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYIRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMTSTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I + + K A + + ++P++++++ +I S Sbjct: 116 VDIPSYRCKPRDIITARDEQKSRALIQNYLDSSPHEELPKHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|49182778|gb|AAT57851.1| small ribosomal protein [Plagiochila austinii] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKSKSSYI---DRSTPNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE R D ++R PTI ARQ VNHRH+ +N Sbjct: 57 RQLLKYMYIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHISINNDM 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SY C+ GD+I + K K + V + ++ +P +++ + + + ++ + Sbjct: 117 VNIPSYNCEPGDIITIGNKQKSRSIVTKNISSFQKLKIPSHLTFDSTQLQGSVNQMINR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWINLKINELLVVEYYSR 193 >gi|11228631|gb|AAG33101.1| small ribosomal protein 4 [Dicranoweisia cirrata] Length = 190 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P S + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 YRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LDQESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|67035656|gb|AAY62759.1| small ribosomal protein subunit 4 [Ceratodon purpureus] gi|67035658|gb|AAY62760.1| small ribosomal protein subunit 4 [Ceratodon purpureus] gi|67035660|gb|AAY62761.1| small ribosomal protein subunit 4 [Ceratodon purpureus] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDNIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K +++ + +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSKIMIIKNTNFSQKSKVPNHLTFNSLENKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESVGLKINELLVVEYYSR 192 >gi|63191645|gb|AAY34784.1| small ribosomal protein subunit 4 [Matteria gracillima] Length = 202 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 5 RGPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 60 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 61 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 120 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 R V+I SYRCK D I +K + K + + ++ +P ++ N +I Sbjct: 121 HRIVDIPSYRCKPLDFITIKDRRKSQDIINKNIDFYQKSKIPNHLIYNSLEKKGLVNQI- 179 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 180 --LDRELIGLKINELLVVEYYSR 200 >gi|151370786|gb|ABS11011.1| ribosomal protein subunit 4 [Dendro-hypnum reinwardtii] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G L K+ S + K S + ++L KQK++ +YG I+E++ Sbjct: 2 KIIRRLGALLGLTNKTAQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 58 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K A + + ++ +P +++ + +I L Sbjct: 118 IPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKYKIPNHLTYSSLEKKGFVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + L+VE+YSR Sbjct: 175 ESIGLKINELLIVEYYSR 192 >gi|116010519|emb|CAL37366.1| ribosomal protein S4 [Ligustrum ovalifolium] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRP----KAGSDPRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPAARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + + + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIIMTKDEQKSRTLIQNSLDSSPHEELPNHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|46811030|gb|AAT01833.1| small ribosomal protein 4 [Moerckia blyttii] Length = 197 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRR-KSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G L G + + G Q K S + ++ KQK++ +YG Sbjct: 1 GPRAKIIRRLGA-LPGLSNGMLGS---GSSYTNQSTANRKISQYRIRSEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + A R++G T L+ LE RLD IV+R PTI ARQ VNHRH+L+N Sbjct: 56 LTERQLLKYVRIARRAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHILIN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIP 183 +V+I SY C+ DVI ++ + + + L++ + +P +++++ + ++ Sbjct: 116 DDTVDIPSYSCEPKDVITIRDRQESRLIIARNMDLSQGQKIPNHLTLDSTQFRGSVDQVI 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 DR---EWIDLKINELLVVEYYSR 195 >gi|121761759|gb|ABM64966.1| ribosomal protein S4 [Plagiomnium affine] gi|121761761|gb|ABM64967.1| ribosomal protein S4 [Plagiomnium affine] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|12330510|gb|AAG52792.1| ribosomal protein 4 [Ditrichum pallidum] Length = 189 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 8/194 (4%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 R+G K+P + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RLGTLPGLTNKTPQLK---TSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNY 56 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI SY Sbjct: 57 VRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY 116 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 RCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 RCKPQDFITIKDRQKSQAIIIKNIDFSQKSKIPNHLTFNSLEKKGLVNQI---LDQESIG 173 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 LKINELLVVEYYSR 187 >gi|117927542|ref|YP_872093.1| SSU ribosomal protein S4P [Acidothermus cellulolyticus 11B] gi|152060925|sp|A0LRP7|RS4_ACIC1 RecName: Full=30S ribosomal protein S4 gi|117648005|gb|ABK52107.1| SSU ribosomal protein S4P [Acidothermus cellulolyticus 11B] Length = 208 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 121/213 (56%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR L+ + PK P+ R Y PG HG+ R +K S + LQLR Sbjct: 1 MARYLGADCKLCRREKMKLFLKGSKCESPKCPIEERPYPPGEHGRTR-AKESEYLLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK + YG + EK+FR ++EA R G T NL+ LESRLD +VYRA F + ARQ Sbjct: 60 KQKCARIYG-VLEKQFRRYYEEASRKTGRTGENLLRILESRLDNVVYRAGFAASRDQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H LVNGR V+I SYR E DVIEV +KS++L + A +A ER VP ++ V + Sbjct: 119 LVRHGHFLVNGRRVDIPSYRVSENDVIEVAEKSRELTPFVIARAVAGERTVPPWLEVIPN 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +PS +Q L+VEFYS+ Sbjct: 179 RLRILVHSLPSRQ---VIDTPVQEQLIVEFYSK 208 >gi|49182734|gb|AAT57829.1| small ribosomal protein [Jungermannia exsertifolia] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKTLKPKSSYI---DRSSSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I VK K K + + + L ++ +P +++ + + + + Sbjct: 117 VDIPSYSCQLGDIITVKNKQKSQSMITKNINLFQKLKIPSHLTFDSIELRGYVNQ---RI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWINLKINELLVVEYYSR 193 >gi|18920781|gb|AAL82435.1| ribosomal protein system 4 [Pseudotaxiphyllum elegans] Length = 197 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 2 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 57 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 58 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 117 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 118 IVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI--- 174 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 LDRESIGLKINELLVVEYYSR 195 >gi|83940945|gb|ABC48869.1| rps4 [Changiostyrax dolichocarpa] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P+ G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKRPIA----GTDLRNQPRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGHI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I + + K A V + + ++P+++++ +I S Sbjct: 116 VDIPSYRCKPRDIITARDEQKSRALVQNSFDSSHHEELPKHLTLYPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|66866207|gb|AAY57777.1| small ribosomal protein 4 [Aulacomnium palustre] Length = 206 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 13/210 (6%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P S K S + ++L QK++ +Y Sbjct: 2 RYRGPRVRIIRRLGALPGLTTKTPQLKSSSI---DQSTSNKKISQYRIRLEENQKLRFHY 58 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+L Sbjct: 59 G-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHIL 117 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMV 176 VN V+I SYRCK D I +K + K A + + L ++ +P +++ + Sbjct: 118 VNDHIVDIPSYRCKPQDFITIKDRQKSEAIIXXXXXXKNIDLYQKYKIPNHLTYSSLEKK 177 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 178 GLVNQI---LDRESIGLKINELLVVEYYSR 204 >gi|20531088|gb|AAM27365.1| ribosomal protein 4 [Diphyscium fasciculatum] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTSKTPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K V++ +++ +P +++++ +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQDIVVKNMDFSQKYKIPNHLTLDSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + VVE+YSR Sbjct: 174 RESIGLKINELFVVEYYSR 192 >gi|284992847|ref|YP_003411401.1| 30S ribosomal protein S4 [Geodermatophilus obscurus DSM 43160] gi|284066092|gb|ADB77030.1| ribosomal protein S4 [Geodermatophilus obscurus DSM 43160] Length = 208 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 116/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR L+ + PK P+ R Y PG HG+ R K S + LQLR Sbjct: 1 MARYTGADCRMCRREKMKLFLKGSKCESPKCPIEIRPYPPGEHGRGRS-KDSEYLLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG + EK+FR ++EA++ G T L+ LESRLD +VYRA F + ARQ Sbjct: 60 KQKARRIYG-VLEKQFRGYYEEANKKSGKTGEVLLQILESRLDNVVYRAGFAESRDMARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H+ VNGR V+I SYR D+IEV +KS+++ A A ER VP ++ V Sbjct: 119 LVRHGHIRVNGRKVDIPSYRVASNDIIEVAEKSRRMLPFEIAQARAGERPVPPWLEVISS 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + +P+ +Q L+VE YS+ Sbjct: 179 QLRVLVHSVPARQ---VIDTPVQEQLIVELYSK 208 >gi|83416506|gb|ABC18273.1| small ribosomal subunit protein 4 [Ctenidium molluscum] Length = 196 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 IVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|325288604|ref|YP_004264785.1| SSU ribosomal protein S4P [Syntrophobotulus glycolicus DSM 8271] gi|324964005|gb|ADY54784.1| SSU ribosomal protein S4P [Syntrophobotulus glycolicus DSM 8271] Length = 209 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K S ++ RR G L+ + K ++ R Y PG+HGQ R KPS FG+QLR Sbjct: 1 MAKYTDSVCRLCRREGIKLFLKGDRCYTNKCSIDRRPYAPGVHGQSRGRKPSDFGIQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK ++ YG I EK+FR F+ A R +G T NL+ LE RLD +VYR F + ARQ Sbjct: 61 KQKARRIYG-IMEKQFRRYFEMASRQKGMTGENLLRLLERRLDNVVYRIGFASSRAEARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ-LAERDVPEYISVNHD 173 FV H H+ VNG+ V+I SY K G+VI V +KS+ + + E +A+R VP ++S + + Sbjct: 120 FVTHGHITVNGKRVDIASYLIKVGEVIAVNEKSRSSSRIKELIDTMADRSVPGWLSADSN 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + T + +PS + ++ + +VE YSR Sbjct: 180 SASGTVLALPSR---EDIQIPIEEHFIVEKYSR 209 >gi|29027168|gb|AAN47146.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027170|gb|AAN47147.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027172|gb|AAN47148.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027176|gb|AAN47150.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027178|gb|AAN47151.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027180|gb|AAN47152.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027182|gb|AAN47153.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027184|gb|AAN47154.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027186|gb|AAN47155.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027188|gb|AAN47156.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027196|gb|AAN47160.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027198|gb|AAN47161.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027200|gb|AAN47162.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027202|gb|AAN47163.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIIGKNIDFYQKYKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|3914864|sp|O20291|RR4_TRISA RecName: Full=30S ribosomal protein S4, chloroplastic gi|2293101|emb|CAA92562.1| ribosomal protein S4 [Trimezia stayermarkii] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDLKNQLRSGKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K K + + + ++P +++++ +I Sbjct: 116 VDIPSYRCKPQDIITTKDKERSKVLIQNYIASSSHEELPNHLTIDPLQYKGLVNQIIDRK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|121761767|gb|ABM64970.1| ribosomal protein S4 [Plagiomnium ellipticum] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|161507287|ref|YP_001577241.1| 30S ribosomal protein S4 [Lactobacillus helveticus DPC 4571] gi|172048222|sp|A8YUL2|RS4_LACH4 RecName: Full=30S ribosomal protein S4 gi|160348276|gb|ABX26950.1| 30S ribosomal protein S4 [Lactobacillus helveticus DPC 4571] gi|328468696|gb|EGF39681.1| 30S ribosomal protein S4 [Lactobacillus helveticus MTCC 5463] Length = 203 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G+ N + LE RLD+IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGEHGTNFMILLERRLDSIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDESLVVEWYNK 201 >gi|33413195|emb|CAD86733.1| ribosomal protein small subunit 4 [Dicranum tauricum] Length = 191 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 LNYIRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A +++ +++ +P +++ + +I L Sbjct: 116 PSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKYKIPNHLTFSSLEKKGLVNQI---LDQE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|63191701|gb|AAY34812.1| small ribosomal protein subunit 4 [Pulchrinodus inflatus] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMSPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQAIITKNIDFYQKYKIPNHLTYNSLKKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|3914847|sp|O20213|RR4_FURGI RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292864|emb|CAA92564.1| ribosomal protein S4 [Furcraea gigantea] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGTLPGLTSKRPRS----GSDLKNPLRSVKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ V HRH+LVNGR Sbjct: 56 RQLLRYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVTHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K K + A + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPHEELPNHLTIDSFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|116010535|emb|CAL38871.1| ribosomal protein S4 [Shepherdia sp. IND] Length = 194 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L K+K++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKKP----RAGSDLRNQSRPIKKSQYRIRLEEKEKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+ VNGR Sbjct: 56 QQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHIFVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I VK++ K A V A R ++P++++++ +I S Sbjct: 116 VDIPSYRCKPRDIITVKEEQKSRALVQNYLDSASREELPKHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|37548875|gb|AAO32706.1| ribosomal protein 4 [Polytrichastrum alpinum] Length = 193 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 KXIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VN Sbjct: 57 LLNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVN 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 IPSYRCKPQDFITIKDRQESQAIITKNIDFSQKYKIPNHLTFNSLEKKGLINQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ESIGLKINELLVVEYYSR 191 >gi|18920727|gb|AAL82408.1| ribosomal protein system 4 [Acrocladium auriculatum] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 VNIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|67035696|gb|AAY62779.1| small ribosomal protein subunit 4 [Bryomanginia saint-pierrei] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 10/203 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIP 183 N R +NI SYRCK D I +K + K A V + + VP +++ N +I Sbjct: 117 NNRIINIPSYRCKPQDFITIKDQQKFQAMV---NFSQKYKVPNHLTFNSLEKKGLVNQI- 172 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + L+VE+YSR Sbjct: 173 --LDHESIGLKINELLIVEYYSR 193 >gi|37992473|gb|AAR06415.1| small ribosomal protein 4 [Cryptopapillaria penicillata] Length = 196 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 IVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVTQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|42556402|gb|AAS19796.1| small ribosomal protein 4 [Calypogeia integristipula] Length = 191 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKVLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A R +G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARRVKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNNIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I V++K K + + + + ++ +P +++ + + + ++ Sbjct: 117 SYNCEPGDIITVREKQKSQSIITKNINVFQKLKIPSHLTFDSTELRGFVNQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IDLKINELLVVEYYSR 189 >gi|42556508|gb|AAS19849.1| small ribosomal protein 4 [Triandrophyllum subtrifidum] Length = 191 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGVLPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-VTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHIAINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I +K K K + + + L ++ +P +++ + + + + + Sbjct: 117 SYNCEPGDIITIKNKQKSQSIITKNISLFQKLKIPSHLTFDSTKLRGSINQAINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|67035781|gb|AAY62821.1| small ribosomal protein subunit 4 [Cryphaea patens] Length = 198 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ + I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNXI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|67035821|gb|AAY62841.1| small ribosomal protein subunit 4 [Isocladiella surcularis] Length = 198 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I ++ + K + + + ++ +P +++ + +I Sbjct: 117 DCMVDIPSYRCKPQDFITIRNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLINQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|118626027|emb|CAL41741.1| small ribosomal protein 4 [Anastrophyllum minutum var. weberi] Length = 191 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIS 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLRGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|67035586|gb|AAY62724.1| small ribosomal protein subunit 4 [Bruchia drummondii] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKIPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +L+ +++ VP +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQAMILKNVDFSQKSKVPNHLTFNSLEKKGVVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|3098170|gb|AAC15533.1| small ribosomal protein 4 [Brachymenium pulchrum] Length = 199 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + + RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRKKRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNH+H+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHKHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 NDRIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|63191803|gb|AAY34861.1| small ribosomal protein subunit 4 [Erythrophyllopsis fuscula] Length = 199 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKIPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVLFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 NNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|158520749|ref|YP_001528619.1| RNA-binding S4 domain-containing protein [Desulfococcus oleovorans Hxd3] gi|226732176|sp|A8ZV81|RS4_DESOH RecName: Full=30S ribosomal protein S4 gi|158509575|gb|ABW66542.1| RNA-binding S4 domain protein [Desulfococcus oleovorans Hxd3] Length = 208 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + S ++ RR L+ + K + R Y PG HGQ R K S +G+QLR Sbjct: 1 MGRYRESVCRLCRRENLKLFLKGDRCFSDKCAFDRRGYPPGEHGQLR-PKFSGYGIQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG +SE +FR +F EADR +G T L+ LESRLD VYR FV + RQ Sbjct: 60 KQKVKRMYG-LSEGQFRRVFAEADRRKGITGSTLLVLLESRLDNAVYRLGFVNSRTQGRQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 + H H LVNG++V+I SY GDVIEV++KS+ + + E+ E R VP+++S+ + Sbjct: 119 LIRHNHFLVNGKNVDIPSYVLSPGDVIEVREKSRNMQVIDESLAAVERRGVPQWLSLEKE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N +P + +Q L+VE YS+ Sbjct: 179 NKRGVVKNLPVR---EDITIPIQEQLIVELYSK 208 >gi|28194697|gb|AAO33610.1|AF480965_1 ribosomal protein S4 [Pleurochaete squarrosa] gi|63078581|gb|AAY29377.1| ribosomal protein S4 [Pleurochaete luteola] gi|63078583|gb|AAY29378.1| ribosomal protein S4 [Pleurochaete squarrosa] gi|63078603|gb|AAY29388.1| ribosomal protein S4 [Pleurochaete squarrosa] Length = 196 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSNSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|28194689|gb|AAO33606.1|AF480961_1 ribosomal protein S4 [Pottiopsis caespitosa] Length = 196 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S ++ K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---INQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|121761726|gb|ABM64950.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761728|gb|ABM64951.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761746|gb|ABM64960.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761769|gb|ABM64971.1| ribosomal protein S4 [Plagiomnium ellipticum] gi|121761869|gb|ABM65020.1| ribosomal protein S4 [Plagiomnium ellipticum] Length = 195 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQTSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|11228662|gb|AAG33116.1| small ribosomal protein 4 [Pleuridium acuminatum] gi|33413217|emb|CAD86743.1| ribosomal protein small subunit 4 [Pleuridium acuminatum] Length = 190 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGALPGLTNKTPQLK---TSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRLVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 YRCKPQDFITIKNRQKSQAMIIKNIDFSQKSKIPNHLTFNSLEKKGLVNQI---LDQESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|18920737|gb|AAL82413.1| ribosomal protein system 4 [Herzogiella adscendens] Length = 196 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 10/202 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P G Q K S + ++L KQK++ +YG I Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLR----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG-I 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 56 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 116 CIVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 -LDRESIGLKINELLVVEYYSR 194 >gi|28194787|gb|AAO33655.1|AF481010_1 ribosomal protein S4 [Crossidium seriatum] Length = 196 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K P ++ K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLSNKIPHLK---PSSINQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMISKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|17025806|gb|AAL32070.1| ribosomal protein 4 [Syrrhopodon loreus] Length = 198 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGT-LSGLTNKISQLKSNSINQ--STPNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SY+CK D I +K + K +++ + + + +P +++ N +I Sbjct: 117 NNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKHKIPNHLTFNSVEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|67035664|gb|AAY62763.1| small ribosomal protein subunit 4 [Trichodon cylindricus] Length = 194 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQAMIIKNVNFSQKSKVPNHLTFNSLENKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|67035694|gb|AAY62778.1| small ribosomal protein subunit 4 [Ptychomitriopsis aloinoides] Length = 196 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 +I RR+G K+ + + S ++ K S + ++L KQK++ +YG I Sbjct: 1 GPXVRIIRRLGALPGLTNKTQLKSSS----INQSTSNKKISQYRIRLEEKQKLRFHYG-I 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ +NHRH+LVN Sbjct: 56 TERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLSMAPTIPGARQLINHRHILVNN 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K A V++ +++ VP +++ N +I Sbjct: 116 RIVNIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQKYKVPNHLTFNSLEKKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 -LDHKSIGLKINELLVVEYYSR 194 >gi|254458831|ref|ZP_05072255.1| ribosomal protein S4 [Campylobacterales bacterium GD 1] gi|207084597|gb|EDZ61885.1| ribosomal protein S4 [Campylobacterales bacterium GD 1] Length = 208 Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 90/213 (42%), Positives = 129/213 (60%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS + R YGPG HGQRRK K S +GLQL Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSALEKRPYGPGQHGQRRK-KVSEYGLQLNE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR++F EA R G+T NLI+ +ESRLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRALFVEAKRREGNTGTNLITLIESRLDNVVYRMGFASTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LV+G+ ++I SYR K G IEV++ SK+ ++ A +L + + ++ ++ D Sbjct: 119 LVTHGHLLVDGKKLDIPSYRVKPGQKIEVRESSKKNNQIVRAMELTNQTGLAPWVDIDAD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V PV + L+VE YS+ Sbjct: 179 KVFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|145848877|emb|CAJ91115.1| ribosomal protein S4 [Acrocladium auriculatum] Length = 196 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVSIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K K K A + + + ++ +P +++ + +I Sbjct: 117 IVNIPSYRCKPQDFITIKNKRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|67035654|gb|AAY62758.1| small ribosomal protein subunit 4 [Jonesiobryum cerradense] Length = 194 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G L G +S K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGI-LPGLTNKISQLKSGSINQ--SASNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K +++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQTMIIKNLDFSQKTKVPNHLTFNFSZKKGLINQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|121761873|gb|ABM65022.1| ribosomal protein S4 [Plagiomnium acutum] Length = 195 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + ++ RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRLIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKNRQKSQTMISKNIDFCQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|227877293|ref|ZP_03995366.1| ribosomal protein S4 [Lactobacillus crispatus JV-V01] gi|227863149|gb|EEJ70595.1| ribosomal protein S4 [Lactobacillus crispatus JV-V01] Length = 221 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG + + S +G QL KQK++ Sbjct: 19 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 77 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD++VYR T ARQ VNH Sbjct: 78 MYG-LNERQFRTLFTRAGKIREGQHGVNFMILLERRLDSLVYRLGLATTREQARQLVNHG 136 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + M T Sbjct: 137 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALE-AVTARPSFVSFDENKMEGTL 195 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + LVVE+Y++ Sbjct: 196 VRLPERDEMEP---EIDEALVVEWYNK 219 >gi|151370784|gb|ABS11010.1| ribosomal protein subunit 4 [Dendro-hypnum milnei] Length = 194 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 +I RR+G L K+ S + K S + ++L KQK++ +YG I+E++ Sbjct: 2 RIIRRLGALLGLTNKTAQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 57 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 58 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVD 117 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K A + + ++ +P +++ + +I L Sbjct: 118 IPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKYKIPNHLTYSSLEKKGFVNQI---LDR 174 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 ESIGLKINELLVVEYYSR 192 >gi|22854687|gb|AAN09763.1| small ribosomal protein 4 [Chorisodontium mittenii] Length = 190 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 10/196 (5%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 RRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQLL 55 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 NYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNIP 115 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ +P +++ + +I L Sbjct: 116 SYRCKPQDFITIKDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQI---LDQES 172 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 IGLKINELLVVEYYSR 188 >gi|18920769|gb|AAL82429.1| ribosomal protein system 4 [Plagiothecium denticulatum] Length = 197 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 2 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 57 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 58 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 117 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 118 IVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI--- 174 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 LDRESIGLKINELLVVEYYSR 195 >gi|118626025|emb|CAL39329.1| small ribosomal protein 4 [Anastrophyllum minutum var. minutum] gi|118626049|emb|CAL39333.1| small ribosomal protein 4 [Anastrophyllum minutum] Length = 191 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + +Y K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTNKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIS 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|315640101|ref|ZP_07895224.1| 30S ribosomal protein S4 [Enterococcus italicus DSM 15952] gi|315484148|gb|EFU74621.1| 30S ribosomal protein S4 [Enterococcus italicus DSM 15952] Length = 203 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 75/205 (36%), Positives = 113/205 (55%), Gaps = 7/205 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K+ RR+G +L G K + R Y PG HG + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKVSRRLGISLSGTGKE-LARRPYAPGQHGPNSRGSRSEYGQQLTEKQKLRH 59 Query: 61 YYGDISEKKFRSIFKEADRSR-GDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F +A + + G N + LE RLD +VYR T ARQ VNH Sbjct: 60 MYG-MNERQFRTLFVKASKIKEGKHGVNFMILLEQRLDNVVYRLGLATTRRQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G VI V++KS+ L V EA + + P ++S + + + + Sbjct: 119 HITVDGKRVDIPSYHVDLGQVIGVREKSQNLTIVKEAVE-STVGRPAFVSFDDEKLEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFY 204 R+P D YP + L+VEFY Sbjct: 178 SRLPER--DELYP-DIDEALIVEFY 199 >gi|17025812|gb|AAL32073.1| ribosomal protein 4 [Syrrhopodon armatus] Length = 198 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGILSGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 +NI SY+CK D I +K + K +++ + + +P +++ N +I Sbjct: 117 NHIINIPSYQCKPQDFITIKDQQKHQTMIVKNINFSPKHKIPNHLTFNSVEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQEAIGLKINELLVVEYYSR 196 >gi|121761742|gb|ABM64958.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761748|gb|ABM64961.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761765|gb|ABM64969.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761785|gb|ABM64979.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761794|gb|ABM64983.1| ribosomal protein S4 [Plagiomnium cuspidatum] gi|121761818|gb|ABM64995.1| ribosomal protein S4 [Plagiomnium acutum] gi|121761871|gb|ABM65021.1| ribosomal protein S4 [Plagiomnium acutum] Length = 195 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDLITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|7576775|gb|AAF63984.1| small ribosomal protein 4 [Polytrichum commune] gi|37548883|gb|AAO32710.1| ribosomal protein 4 [Polytrichum juniperinum] gi|293634125|gb|ADE60442.1| ribosomal protein subunit 4 [Polytrichum strictum] Length = 192 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 57 LNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|121761714|gb|ABM64944.1| ribosomal protein S4 [Plagiomnium insigne] gi|121761716|gb|ABM64945.1| ribosomal protein S4 [Plagiomnium insigne] gi|121761720|gb|ABM64947.1| ribosomal protein S4 [Plagiomnium insigne] gi|121761740|gb|ABM64957.1| ribosomal protein S4 [Plagiomnium insigne] Length = 195 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G L G + +S K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGA-LPGLTNKTLQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|153952888|ref|YP_001393653.1| 30S ribosomal protein S4 [Clostridium kluyveri DSM 555] gi|219853553|ref|YP_002470675.1| hypothetical protein CKR_0210 [Clostridium kluyveri NBRC 12016] gi|146345769|gb|EDK32305.1| RpsD1 [Clostridium kluyveri DSM 555] gi|219567277|dbj|BAH05261.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 206 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 12/212 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K + ++ RR G L+ + K + R Y PG HGQ RK K S +GLQLR Sbjct: 1 MAKYTGAVCRLCRREGLKLFLKGDRCYTDKCGFSRRGYAPGQHGQGRK-KVSNYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K+ YG + EK+FR + +ADR +G T NL+ LE+RLD +VY+ + + ARQ Sbjct: 60 KQKSKRIYG-LLEKQFRKYYDKADRKKGITGENLLVLLETRLDNVVYKLGYGQSRTEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDN 174 V H H VNGR VNI S++ D I VK SK ++ + +P ++ N +N Sbjct: 119 LVTHGHFKVNGRKVNIPSFKVSVNDTISVKDGSKSSEKFKTFAENP-KTLPTWLEGNIEN 177 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +R P + V + L+VE YS+ Sbjct: 178 FEGRVIREPMREE---IDVPVNETLIVELYSK 206 >gi|146329810|ref|YP_001210128.1| 30S ribosomal protein S4 [Dichelobacter nodosus VCS1703A] gi|172047329|sp|A5EX95|RS4_DICNV RecName: Full=30S ribosomal protein S4 gi|146233280|gb|ABQ14258.1| 30S ribosomal protein S4 [Dichelobacter nodosus VCS1703A] Length = 206 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 120/211 (56%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTR---SYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K ++ RR G +L + P ++ + PG HG R+ + S +G QLR KQ Sbjct: 1 MARYIGPKCRLARREGVDLELKSGVRPSESKCNMNAAPGQHG-GRRGRLSDYGGQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+K+ YG + E++FR+ +K+A + +G T NL+ LE RLD +VYR + T ARQ V Sbjct: 60 KLKRTYG-VLERQFRNYYKKAVQQKGSTGENLLILLEQRLDNVVYRMGYGSTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 +H + VNG+ V I SY+ + D++ V+++S++ + A ++A +R ++I V+ M Sbjct: 119 SHGAIEVNGQRVTIASYQVQAEDIVSVREQSRKQIRIQSALEIAKQRGFVDWIEVDAAKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R+P + + +LVVE YS+ Sbjct: 179 SGQFKRVPER---IDLSADINESLVVELYSK 206 >gi|18920755|gb|AAL82422.1| ribosomal protein system 4 [Myurella julacea] Length = 197 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 4 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 59 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 60 QLLNYVRIARRAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 119 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 120 DIPSYRCKPQDFITIKDQKKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI---LD 176 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 RESIGLKINELLVVEYYSR 195 >gi|309789644|ref|ZP_07684225.1| ribosomal protein S4 [Oscillochloris trichoides DG6] gi|308228380|gb|EFO82027.1| ribosomal protein S4 [Oscillochloris trichoides DG6] Length = 238 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 75/210 (35%), Positives = 115/210 (54%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 M++ K+ RR+G + + + +N RSY PG HG R+ + S +GLQL KQK K Sbjct: 33 MARYNGPVGKVSRRLGIGITEKGQRILNKRSYPPGQHGPNARRRQVSDYGLQLLEKQKAK 92 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR IF++A R G T L+S LE RLD +VYR T ARQ V H Sbjct: 93 FIYG-VLERQFRRIFEQAARRSGVTGEYLLSLLERRLDNVVYRLGMATTRAQARQLVTHG 151 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL---EASQLAERDVPEYISVNHDNMV 176 H++V+GR NI S+ K G VI V+ +S++ A ++ L + P+++ ++ ++ Sbjct: 152 HIMVDGRKTNIPSFTLKVGQVISVRPESRRRAYFKNLVDSGDLNKYRAPDWLRLDAADLS 211 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T + +P + L+VEFYSR Sbjct: 212 GTVIALPRR---EDAEAGINEQLIVEFYSR 238 >gi|67036026|gb|AAY62939.1| small ribosomal protein subunit 4 [Aerolindigia capillacea] Length = 197 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P G Q K S + ++L KQK++ +YG Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 56 ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D + +K K K + + +L ++ +P +++ + +I Sbjct: 116 DCIVDIPSYRCKPQDFVTIKNKRKSENIISKNMELYQKYKIPNHLTYSFLEKKGLVNQI- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 --LDRESIGLKINELLVVEYYSR 195 >gi|293634085|gb|ADE60422.1| ribosomal protein subunit 4 [Polytrichastrum emodi] Length = 192 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 57 LNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + A + ++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKDRQESQAIIARNIDFSQNYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SINLKINELLVVEYYSR 190 >gi|42556438|gb|AAS19814.1| small ribosomal protein 4 [Leiomitra lanata] Length = 191 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYMRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNEIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDTITIRNKHKSQSIITKNINLFQKLKIPSHLTFDLIQLKGSVNQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|33413193|emb|CAD86732.1| ribosomal protein small subunit 4 [Dicranum fuscescens] Length = 191 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 LNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I ++ + K A +++ +++ +P +++ + +I L Sbjct: 116 PSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKFKIPNHLTFSSLEKKGLVNQI---LDQE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|75858236|gb|ABA28692.1| small ribosomal protein 4 [Plagiochilion conjugatum] Length = 191 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKILKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNH+H+ +N V+I Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHKHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITIRNKQKSQSIITKNINSFQKLKIPSHLTFDSTQLRGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|22854703|gb|AAN09771.1| small ribosomal protein 4 [Distichium capillaceum] Length = 189 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 103/194 (53%), Gaps = 8/194 (4%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 R+G K+P S + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNY 56 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI SY Sbjct: 57 VRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY 116 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 RCK D I +K + K A +++ + +++ VP +++ N +I L Sbjct: 117 RCKPQDFITIKDRQKSQAIIIKNIEFSQKYKVPNHLTFNSLQKKGLVNQI---LDRESIG 173 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 LKINELLVVEYYSR 187 >gi|63191685|gb|AAY34804.1| small ribosomal protein subunit 4 [Leptodictyum riparium] gi|63191687|gb|AAY34805.1| small ribosomal protein subunit 4 [Warnstorfia exannulata] Length = 194 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P L+ K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLK---SSSLNQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|67035937|gb|AAY62895.1| small ribosomal protein subunit 4 [Alsia californica] Length = 198 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+ S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + +L ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSETIISKNIELYQKSKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|21914176|gb|AAM81310.1| ribosomal protein subunit 4 [Epipterygium tozeri] Length = 195 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + + +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQNYKIPNHLTYNSLTKKGLVXQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIDLKINELLVVEYYSR 193 >gi|118474712|ref|YP_891268.1| 30S ribosomal protein S4 [Campylobacter fetus subsp. fetus 82-40] gi|152060940|sp|A0RM35|RS4_CAMFF RecName: Full=30S ribosomal protein S4 gi|118413938|gb|ABK82358.1| ribosomal protein S4 [Campylobacter fetus subsp. fetus 82-40] Length = 208 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 90/213 (42%), Positives = 123/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQ RK+K S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQ-RKTKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR +F EA R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-VSEKQFRRLFSEAARREGNTGALLIGLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR G+ IEV +KSK ++ A +L + + ++ V D Sbjct: 119 LVTHGHILVNGKKVDIPSYRVTAGEKIEVAEKSKTNPQIVRAIELTNQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP ++V PV + +VE YS+ Sbjct: 179 KKYGIFTRIPER-EEVVIPV--EERYIVELYSK 208 >gi|21914184|gb|AAM81314.1| ribosomal protein subunit 4 [Rhodobryum spathulatum] Length = 196 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P + + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGALPGPTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYIRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRC+ D I +K + K A + + L ++ P +++ N +I Sbjct: 117 IVNIPSYRCRPEDFITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|18920797|gb|AAL82443.1| ribosomal protein system 4 [Taxiphyllum wissgrillii] Length = 197 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 ++I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 CILDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|78369605|gb|ABB43032.1| ribosomal protein 4 [Syrrhopodon tristichus] Length = 199 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKILRRLGTLSGLTIKTPQLKSSSI---NQPTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SY+CK D I +K + K +++ + + P ++ N +I Sbjct: 117 NNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTSFFPKYKTPNHLIFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|270300675|gb|ACZ69416.1| ribosomal protein S4 [Radula aquilegia] Length = 202 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTL---KPKSISIDRAMSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ VNH+H Sbjct: 58 HYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++N +VNI SY C+ GD+I ++ + K + + L ++ ++P +++ + + + Sbjct: 117 FVINNFTVNIPSYNCELGDIITIRNRQKSKSIITRNMNLFQKLEIPNHLTFDSTQLRGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NQ---RIDCNSINFKINELLVVEYYSR 200 >gi|150020872|ref|YP_001306226.1| 30S ribosomal protein S4 [Thermosipho melanesiensis BI429] gi|172048669|sp|A6LLP0|RS4_THEM4 RecName: Full=30S ribosomal protein S4 gi|149793393|gb|ABR30841.1| RNA-binding S4 domain protein [Thermosipho melanesiensis BI429] Length = 209 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + K+ RR G L+ + K + R + PG HG+ K K + +G+QLRA Sbjct: 1 MARYTGPQCKLCRREGMKLYLKGERCFTDKCAFDRRPFAPGDHGRE-KKKLTQYGIQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ MK+ YG + E +FR +++A + GDT NL+ +E RLD +VYR F ARQ Sbjct: 60 KQTMKRIYG-VLEAQFRRYYEKAAKKSGDTRENLVVQVERRLDNVVYRLGFAVNRTTARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H H LVNG+ VNI SY+ + GDVIEV++KSK + + A +L +++ ++SV+ + Sbjct: 119 LVSHGHFLVNGKKVNIPSYQVRPGDVIEVREKSKDILPIKNAIELNKDKNRMPWLSVDFE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 N + R P + + PV +Q ++E YSR Sbjct: 179 NYKGVYERHPKLEEVIDLPVDVQA--IIELYSR 209 >gi|67036052|gb|AAY62952.1| small ribosomal protein subunit 4 [Squamidium brasiliense] Length = 199 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D + +K + K + + + ++ +P +++ + Sbjct: 116 VNDCIVDIPSYRCKPQDFVTIKNQRKSETIISKNIEFYQKYKIPNHLTYIFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|92417461|gb|ABE76826.1| ribosomal protein subunit 4 [Cryphaea heteromalla] Length = 198 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRELIGLKINELLVVEYYSR 196 >gi|28194717|gb|AAO33620.1|AF480975_1 ribosomal protein S4 [Cinclidotus fontinaloides] Length = 196 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +S K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGT-LPGLSNKIPHLKSSSTNQ--SISNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I + + K + + + +++ +P +++ N +I Sbjct: 117 IVDIPSYRCKPQDFITINDRQKSQVMITKNVEFSQKSKIPNHLTFNFLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|67036060|gb|AAY62956.1| small ribosomal protein subunit 4 [Struckia argentata] Length = 198 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + + A + + + ++ +P +++ N +I Sbjct: 117 DCIVDIPSYRCKPQDFISMKNQRESEAIINKNIEFYQKYKIPNHLTYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|24473846|gb|AAL82767.1| small ribosomal subunit protein 4 [Bryum gemmiparum] Length = 197 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P + + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALQGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 RIVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|114319643|ref|YP_741326.1| SSU ribosomal protein S4P [Alkalilimnicola ehrlichii MLHE-1] gi|122312435|sp|Q0ABF1|RS4_ALHEH RecName: Full=30S ribosomal protein S4 gi|114226037|gb|ABI55836.1| SSU ribosomal protein S4P [Alkalilimnicola ehrlichii MLHE-1] Length = 206 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 121/211 (57%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K+ RR G +L+ + P++++ PG QRR ++ S +GLQLR KQ Sbjct: 1 MARYIGPTCKLARREGTDLFLKSGVRPLDSKCKLDQPPGPKLQRR-TRMSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLERQFRNYYKEAARQKGATGTVLLQLLESRLDNVVYRMGFATTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNM 175 +HR V VNGR VN+ S + GD++ +K+K+++ V A ++A+++ P ++ V+ Sbjct: 119 SHRGVQVNGRVVNVPSMQVSPGDLVGLKEKAQKQLRVQAALEMAQQNGWPAWVEVDPKKF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T+ P + +L+VE YS+ Sbjct: 179 EGTYKARPDRAD---LSAEINESLIVELYSK 206 >gi|42556470|gb|AAS19830.1| small ribosomal protein 4 [Nowellia sp. He-Nygren 1097] Length = 190 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+ + +Y K S + ++L KQK++ +YG ++E++ Sbjct: 1 RRLGVLPGLSSKTLKSKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLK 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD V+R PTI ARQ VNH H+ +N ++I S Sbjct: 57 YVRIARKAKGSTGQVLLQLLEMRLDNTVFRLGMAPTIPGARQLVNHGHISMNNNIIDIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 Y C+ GD+I ++ K + + + + L ++ P +++ + + + ++ + Sbjct: 117 YNCQPGDIITIRNKLESRSMITKNINLFQKLKTPSHLTFDLTELQGSVNQMINR---EWV 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NLKINELLVVEYYSR 188 >gi|295425094|ref|ZP_06817799.1| 30S ribosomal protein S4 [Lactobacillus amylolyticus DSM 11664] gi|295065153|gb|EFG56056.1| 30S ribosomal protein S4 [Lactobacillus amylolyticus DSM 11664] Length = 203 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGVSLSGTGKE-IARRNYAPGQHGTNSRGRLSEYGEQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD IVYR T ARQ VNH Sbjct: 60 AYG-LNERQFRALFARAGKIREGQHGTNFMILLERRLDNIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A A P Y++ + + M + Sbjct: 119 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALD-AVTARPSYVAFDDNKMEGSL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + + LVVE+Y++ Sbjct: 178 VRLPERDE---MDPNVNEALVVEWYNK 201 >gi|11228633|gb|AAG33102.1| small ribosomal protein 4 [Dicranum condensatum] Length = 191 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 LNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I ++ + K A +++ +++ +P +++ + +I L Sbjct: 116 PSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKSKIPNHLTFSSLEKKGLVNQI---LDQE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|67036046|gb|AAY62949.1| small ribosomal protein subunit 4 [Homalothecium sericeum] Length = 199 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 10/205 (4%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYY 62 + +I RR+G K+P G Q K S + ++L KQK++ +Y Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHY 56 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T + E RLD +++R PTI ARQ VNHRH+L Sbjct: 57 G-ITERQLLNYVRIARKAKGSTGEVSLQLXEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 115 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVR 181 VN V+I SYRCK D I +K + K + + + ++ +P +++ + + Sbjct: 116 VNDCMVDIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYSFLEKKGLVNQ 175 Query: 182 IPSSLKDVPYPVIMQPNLVVEFYSR 206 I L + + LVVE+YSR Sbjct: 176 I---LDRESIGLKINELLVVEYYSR 197 >gi|63191706|gb|AAY34814.1| small ribosomal protein subunit 4 [Plagiomnium cuspidatum] Length = 194 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRLV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RDSIDLKINELLVVEYYSR 192 >gi|307720212|ref|YP_003891352.1| 30S ribosomal protein S4P [Sulfurimonas autotrophica DSM 16294] gi|306978305|gb|ADN08340.1| SSU ribosomal protein S4P [Sulfurimonas autotrophica DSM 16294] Length = 208 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 91/213 (42%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS + R YGPG HGQRRK K S +GLQL Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSALEKRPYGPGQHGQRRK-KVSEYGLQLNE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FR++F EA R G+T NLI+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRALFVEAKRRDGNTGTNLITLIEQRLDNVVYRMGFASTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LV+G+ ++I SYR K G IEVK+ SK V+ A +L + + ++ ++ + Sbjct: 119 LVTHGHILVDGKKLDIPSYRVKPGQKIEVKEASKANNQVVRAIELTNQTGLAPWVDIDAE 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V PV + L+VE YS+ Sbjct: 179 KVYGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|182412027|ref|YP_001817093.1| ribosomal protein S4 [Opitutus terrae PB90-1] gi|226699097|sp|B1ZNC4|RS4_OPITP RecName: Full=30S ribosomal protein S4 gi|177839241|gb|ACB73493.1| ribosomal protein S4 [Opitutus terrae PB90-1] Length = 203 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 6/207 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ ++ RR G+ + G K RSY PG HG + + K S + + L KQK++ Sbjct: 1 MARYTGPTTRVSRRFGQQILGSGK-AFERRSYPPGQHGPKLRRKVSEYAVGLNEKQKLRY 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + E++FR +F+ A + RG T + LE+RLD++VY + AARQFVNH H Sbjct: 60 IYG-LLERQFRRVFEIAKKERGVTGERFLQLLETRLDSVVYLLGLAKSRAAARQFVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATF 179 + VNG V+I SY K GD IEVK + R+VP ++S+N + AT Sbjct: 119 IRVNGHKVDIASYNVKAGDEIEVKNSPASRQLATRCLEENRIRNVPGWLSMNAETFKATV 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P+ + + L+VEFYSR Sbjct: 179 NRLPTRDEMEQ---GINEQLIVEFYSR 202 >gi|157689526|gb|ABV65319.1| ribosomal protein S4 [Neurada procumbens] Length = 192 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 9/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 K RR+G K P G L Q R K S + ++L KQK++ +YG ++E++ Sbjct: 1 KKIRRLGALPGLTSKKP----RAGSDLRSQSRPGKKSQYRIRLEEKQKLRFHYG-LTERQ 55 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+ Sbjct: 56 LLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIVD 115 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D+I + + K A + + ++P++++++ +I Sbjct: 116 IPSYRCKPRDIITARDEQKSRALIQNYLDSSTHEELPKHLTLHTLQYKGLVNQIIDRK-- 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 -WVGLKINELLVVEYYSR 190 >gi|37992643|gb|AAR06500.1| small ribosomal protein 4 [Philophyllum tenuifolium] Length = 199 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGVLPGLTNKIPELKSSSI---TQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + + + + + + ++ +P +++ N +I Sbjct: 117 NDYIVDIPSYRCKPQDFITIKNQRQSESIISKNIEFYQKIKIPNHLTYNFLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRDSIGLKINELLVVEYYSR 197 >gi|17025816|gb|AAL32075.1| ribosomal protein 4 [Syrrhopodon croceus] gi|78369615|gb|ABB43037.1| ribosomal protein 4 [Syrrhopodon croceus] Length = 198 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G L G +S K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGT-LSGLTNKISQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 LTERQLLNYVRIARKIKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SY+CK D I +K + K +++ + + + +P +++ N +I Sbjct: 117 NNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNIKFSPKHKIPNHLTFNSVEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDQESIGLKINELLVVEYYSR 196 >gi|49182726|gb|AAT57825.1| small ribosomal protein [Isotachis lyallii] Length = 195 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTGKTLKQKSSYI---DRSTSTKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD I V+ + K + + + L +P +++ + + + ++ Sbjct: 117 VDIPSYNCEPGDNITVRNRQKSQSIITKNINLFPNSKIPSHLTFDSMKLRGFVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NRELINLKINELLVVEYYSR 193 >gi|21914180|gb|AAM81312.1| ribosomal protein subunit 4 [Haplodontium megalocarpum] Length = 196 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P + + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 MVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNVLKKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|3914858|sp|O20264|RR4_MORST RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292950|emb|CAA92556.1| ribosomal protein S4 [Moraea spathulata] Length = 194 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GSDPKNQLRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A +++G T L+ LE RLD I++R TI ARQ V HRH+LVNGR Sbjct: 56 RQLLKYVHIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVTHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSL 186 ++I SYRCK D+I K K + A + + ++P +++++ +I S Sbjct: 116 MDIPSYRCKPRDIITTKDKQRSKALIQNYIASSPQEELPNHLTIDPIQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WIGLKINELLVVEYYSR 192 >gi|42556406|gb|AAS19798.1| small ribosomal protein 4 [Chaetophyllopsis whiteleggei] Length = 191 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISMNNNTVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K + + + L ++ +P +++ + + + ++ Sbjct: 117 SYNCEPGDIITIRNGQKSQSIITKNLNLFQKSKIPSHLTFDLTRLXGFVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|118626039|emb|CAL41745.1| small ribosomal protein 4 [Anastrophyllum saxicola] Length = 191 Score = 244 bits (623), Expect = 6e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNNTVDIS 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRNKQKSQSVITKNINLFQKLKIPSHLTFDLTQLXGSINQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|37992405|gb|AAR06381.1| small ribosomal protein 4 [Acrocladium auriculatum] Length = 194 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 NIPSYRCKPQDFITIKNQQKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|28194719|gb|AAO33621.1|AF480976_1 ribosomal protein S4 [Weissia controversa] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKNRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|17025853|gb|AAL32092.1| ribosomal protein 4 [Mitthyridium sp. Wall 3885] Length = 198 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVKIIRRLGTLSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LVN Sbjct: 57 LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SY+CK D I +K + K +++ ++ + + P +++ N +I Sbjct: 117 NNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFSPKHKTPTHLTFNSVEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDHESIGLKINELLVVEYYSR 196 >gi|67035606|gb|AAY62734.1| small ribosomal protein subunit 4 [Garckea phascoides] Length = 199 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLTNKTPQLKSSS---TNQSXSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKTKGSTGQILLQLLEMRLDNVIFRLGXAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I +K + K + + + +++ VP ++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITIKDRQKSQXMITKNAXFSQKYKVPNHLXFNFLEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIXLKINELLVVEYYSR 197 >gi|63191815|gb|AAY34867.1| small ribosomal protein subunit 4 [Pseudocrossidium aureum] Length = 199 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKIPHLKSSS---TNPSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 NNRIVNIPSYRCKPQDFITINDRKKSQIMITKNVDFSQKSKIPNHLTFNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|7109201|gb|AAF36676.1| ribosomal protein 4 [Grimmia pulvinata] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 4 KIIRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 59 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VN Sbjct: 60 LLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRIVN 119 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K + +++ +++ +P +++ N +I L Sbjct: 120 IPSYRCKPQDFITIKDRQKSQSMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---LDH 176 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 ESIGLKINELLVVEYYSR 194 >gi|293634047|gb|ADE60403.1| ribosomal protein subunit 4 [Pogonatum nipponicum] Length = 191 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 NYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|288942048|ref|YP_003444288.1| 30S ribosomal protein S4 [Allochromatium vinosum DSM 180] gi|288897420|gb|ADC63256.1| ribosomal protein S4 [Allochromatium vinosum DSM 180] Length = 206 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 76/210 (36%), Positives = 122/210 (58%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKS-PVNTRSYGPGLHGQR--RKSKPSYFGLQLRAKQK 57 M++ K+ RR G +L + ++ ++T+ GQ R+ + S +G+QLR KQK Sbjct: 1 MARYIGPTCKLARREGVDLSLKSRARSLDTKCKLEKQPGQTTDRRRRLSDYGVQLREKQK 60 Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVN 117 +++ YG + E++FR+ +K+A +S+G T NL+ LE RLD +VYR F T ARQ V+ Sbjct: 61 VRRIYG-VLERQFRNYYKKAAQSKGATGENLLQILERRLDNVVYRMGFGATRAEARQLVS 119 Query: 118 HRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMV 176 H+ +LVNGR VNI SY+ D +EV++ +K+ V A LAE+ P+++ V+ + Sbjct: 120 HKGILVNGRIVNIASYQVNADDHVEVREAAKKQVRVQNAMALAEQYGFPDWVEVDSKGLK 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F RIP P + +L+VE YS+ Sbjct: 180 GVFKRIPDR---SDLPADINESLIVELYSK 206 >gi|28194691|gb|AAO33607.1|AF480962_1 ribosomal protein S4 [Aschisma carniolicum] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SY CK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYSCKPQDFITIKDRQKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|47606932|gb|AAT36386.1| ribosomal protein subunit 4 [Hymenodontopsis mnioides] Length = 195 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQAIIGKNLDFYQKYKIPNHLTYNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|24473834|gb|AAL82761.1| small ribosomal subunit protein 4 [Plagiobryum wrightii] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P + + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRVARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 IVNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|293634045|gb|ADE60402.1| ribosomal protein subunit 4 [Pogonatum neesii] Length = 191 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPHLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 NYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + + ++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQESQAIITKNIDFFQKYKIPNHLTFNSLEKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|18920795|gb|AAL82442.1| ribosomal protein system 4 [Taxiphyllum taxirameum] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P R ++ K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTP---RLKSSSINQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + E + ++ +P +++ + +I Sbjct: 117 IVDIPSYRCKPQDFITIKNQRKSETIINENIEFYQKYKIPNHLTYSSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|63191724|gb|AAY34822.1| small ribosomal protein subunit 4 [Flowersia campylopus] Length = 195 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGXLPGLTNKTPXLKSSSI---NQSTSNKKISXYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITIKDRQKSQAIIXKNIDFYQKYKIPNHLTYNSLENKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|71905986|ref|YP_283573.1| 30S ribosomal protein S4 [Dechloromonas aromatica RCB] gi|90101686|sp|Q47J78|RS4_DECAR RecName: Full=30S ribosomal protein S4 gi|71845607|gb|AAZ45103.1| SSU ribosomal protein S4P [Dechloromonas aromatica RCB] Length = 209 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + RSY PG HGQ+ ++ S +G+ LRA Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRSYAPGQHGQKSGARLSDYGVHLRA 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR F EADR +G T NL+ LE+RLD++ YR F + +RQ Sbjct: 61 KQKIRRVYG-VLEGQFRKTFAEADRRKGQTGENLLQLLEARLDSVAYRMGFGASRSESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H +LVNG+ VNI S+ K GDV+++ +++ A + AE R PE+ISV+ Sbjct: 120 VVRHNGILVNGKRVNIPSFIVKPGDVVQLTDRARASLRCKAALEAAESRGFPEWISVDVK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF +P + P + LV+E YS+ Sbjct: 180 EGKGTFKAMPQRSE---LPATLNEGLVIELYSK 209 >gi|157689520|gb|ABV65316.1| ribosomal protein S4 [Melianthus comosus] Length = 193 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P G L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKRP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I + + K A + ++P+Y++++ +I S Sbjct: 116 DIPSYRCKPRDIITPRDEPKSRALIQNYLHSSTHEELPKYLTLHPFQYKGLVNQIIDSN- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WVGLKINELLVVEYYSR 191 >gi|157689460|gb|ABV65286.1| ribosomal protein S4 [Cupaniopsis anacardioides] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 9/202 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K RR+ K P G L Q R K S + ++L KQK++ +YG + Sbjct: 1 GPRFKKIRRLRALPGLTSKRPGA----GNDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-L 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNG Sbjct: 56 TERQLLKYVRIAGKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D+I + K A + + ++P++++++ +I Sbjct: 116 RIVDIPSYRCKPRDIIAARDDQKSRALIQNYLDSSHHEELPKHLTLHAFQYKGLVNQIID 175 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 S + + LVVE+YSR Sbjct: 176 SK---CVGLKINELLVVEYYSR 194 >gi|134302562|ref|YP_001122532.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis WY96-3418] gi|152060949|sp|A4IZR0|RS4_FRATW RecName: Full=30S ribosomal protein S4 gi|134050339|gb|ABO47410.1| ribosomal protein S4 [Francisella tularensis subsp. tularensis WY96-3418] Length = 206 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN----TRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG R+++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKAGDVVTVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P + + L++E YS+ Sbjct: 179 EGTMKSSPDRSE---LSADINEQLIIELYSK 206 >gi|49182679|gb|AAT57802.1| small ribosomal protein [Blasia pusilla] Length = 195 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR G K + Y L+ K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRXGALPGLTNKILKSKSGY---LNPSTSNKKVSQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N + Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNIN 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK D+I +K + K + + + ++ +P +++ + +I Sbjct: 117 VDIPSYNCKPKDIITIKNRQKSQSIITKNLNSFQKSKIPNHLTFDLIQFKGLVNQIIDR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWINLKINELLVVEYYSR 193 >gi|22854705|gb|AAN09772.1| small ribosomal protein 4 [Distichium inclinatum] Length = 191 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R TI ARQ +NHRH+LVN R VNI Sbjct: 57 NYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMASTIPGARQLINHRHILVNDRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ + +++ VP +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQKSQAIIIKNIEFSQKYKVPNHLTFNSLQKKGLVTQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VGLKINELLVVEYYSR 189 >gi|45644720|gb|AAS73108.1| predicted ribosomal protein S4 [uncultured marine gamma proteobacterium EBAC20E09] Length = 211 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 76/216 (35%), Positives = 120/216 (55%), Gaps = 15/216 (6%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRS--------YGPGLHGQRRKSKPSYFGLQ 51 M++ ++ RR G +L + + T+ PG+HG R + S +GLQ Sbjct: 1 MARYRGPSLRLSRREGTDLLLKSGVRAIETKCRTDGNGGLKSPGVHGAMR-GRLSDYGLQ 59 Query: 52 LRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFA 111 LR KQK+++ YG + EK+FR+ +K+A S+G+T NL+S LE RLD +VYR F T Sbjct: 60 LREKQKVRRMYG-VLEKQFRNYYKKAASSKGNTGENLLSLLEKRLDNVVYRMGFGCTRAE 118 Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISV 170 ARQ V+H+ +VNG +VNI SY+ + GD IEV++ K + A ++ A R+ +++ V Sbjct: 119 ARQMVSHKAFMVNGSTVNIPSYQVQPGDEIEVRESKKGHLRIAAALKIAATREECDWLEV 178 Query: 171 NHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + N+ F +P + NL+VE YS+ Sbjct: 179 DDKNLKGVFKSVPDRTD---LSAEINENLIVELYSK 211 >gi|270300673|gb|ACZ69415.1| ribosomal protein S4 [Radula aquilegia] Length = 202 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTL---KPKSISIDRAMSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ VNH+H Sbjct: 58 HYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++N +VNI SY C+ GD+I ++ + K + + L ++ ++P +++ + + + Sbjct: 117 FVINNFTVNIPSYNCELGDIITIRNRPKSKSIITRNMNLFQKLEIPNHLTFDSTQLRGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NQ---RIDCNSINFKINELLVVEYYSR 200 >gi|118626037|emb|CAL39331.1| small ribosomal protein 4 [Anastrophyllum minutum] Length = 191 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTNKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDTVDIS 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYNCEPGDIITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|24473850|gb|AAL82769.1| small ribosomal subunit protein 4 [Brachymenium nepalense] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P + + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K A + + L ++ P +++ N +I Sbjct: 117 IVNIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|39546753|gb|AAR28103.1| small ribosomal protein 4 [Alophosia azorica] Length = 194 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSGYI---NQSVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A ++G T L+ LE RLD I++R P+I ARQ VNH+H+LVN V Sbjct: 57 QLLKYVRIAKGAKGSTGQILLQLLEMRLDNIIFRLGMAPSIPGARQLVNHKHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +L+ +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQKSQAIILKNMDFSQKYKIPNHLTFNSFEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RELIDLKINELLVVEYYSR 192 >gi|63191841|gb|AAY34880.1| small ribosomal protein subunit 4 [Didymodon rigidulus] Length = 199 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKIPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 NNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNVDFSQKSKIPNHLTFNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|270300655|gb|ACZ69406.1| ribosomal protein S4 [Radula wichurae] gi|270300657|gb|ACZ69407.1| ribosomal protein S4 [Radula wichurae] gi|270300659|gb|ACZ69408.1| ribosomal protein S4 [Radula wichurae] gi|270300661|gb|ACZ69409.1| ribosomal protein S4 [Radula wichurae] gi|270300663|gb|ACZ69410.1| ribosomal protein S4 [Radula carringtonii] gi|270300665|gb|ACZ69411.1| ribosomal protein S4 [Radula carringtonii] gi|270300667|gb|ACZ69412.1| ribosomal protein S4 [Radula carringtonii] gi|270300669|gb|ACZ69413.1| ribosomal protein S4 [Radula carringtonii] Length = 202 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G L G + +S+ K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGY-LPGLSNKTLKPKSFSID--RSISNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ VNH+H Sbjct: 58 HYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++N +VNI SY C+ GD+I V+ + K + + L ++ ++P +++ + + + Sbjct: 117 FVINNFTVNIPSYNCELGDIITVRNRQKSKSIITRNMNLFQKLEIPSHLTFDSTQLRGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NQ---RIDCNSINFKINELLVVEYYSR 200 >gi|256842855|ref|ZP_05548343.1| 30S ribosomal protein S4 [Lactobacillus crispatus 125-2-CHN] gi|256848781|ref|ZP_05554215.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-1A-US] gi|262045821|ref|ZP_06018785.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-3A-US] gi|293381690|ref|ZP_06627671.1| 30S ribosomal protein S4 [Lactobacillus crispatus 214-1] gi|295692644|ref|YP_003601254.1| 30S ribosomal protein s4 [Lactobacillus crispatus ST1] gi|256614275|gb|EEU19476.1| 30S ribosomal protein S4 [Lactobacillus crispatus 125-2-CHN] gi|256714320|gb|EEU29307.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-1A-US] gi|260573780|gb|EEX30336.1| 30S ribosomal protein S4 [Lactobacillus crispatus MV-3A-US] gi|290921737|gb|EFD98758.1| 30S ribosomal protein S4 [Lactobacillus crispatus 214-1] gi|295030750|emb|CBL50229.1| 30S ribosomal protein S4 [Lactobacillus crispatus ST1] Length = 203 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGQHGPNNRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD++VYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGQHGVNFMILLERRLDSLVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY K G I +K+KSK L V +A + A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVKVGQTIGLKEKSKNLQQVKDALE-AVTARPSFVSFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDEALVVEWYNK 201 >gi|37548873|gb|AAO32705.1| ribosomal protein 4 [Polytrichadelphus pseudopolytrichum] Length = 192 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 7/196 (3%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSGYINQQT--LSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 57 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 58 NYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDSIVNIP 117 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A ++ +++ +P +++ N +I L Sbjct: 118 SYRCKPQDFITIKDRQESQAIIIRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRES 174 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 IDLKINELLVVEYYSR 190 >gi|3098230|gb|AAC15563.1| small ribosomal protein 4 [Brachythecium rutabulum] gi|222103546|gb|ACM44302.1| small ribosomal protein subunit 4 [Brachythecium rutabulum] Length = 197 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P G Q K S + ++L KQK++ +YG Sbjct: 1 GPRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T + LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 56 ITERQLLNYVRIARKAKGSTGEVSLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 116 DCIVDIPSYRCKPQDFITIKNQRKSETVIDKNIEFYQKYKIPNHLTYSFLEKKGLVNQI- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 --LDRESIGLKINELLVVEYYSR 195 >gi|302036692|ref|YP_003797014.1| 30S ribosomal protein S4 [Candidatus Nitrospira defluvii] gi|300604756|emb|CBK41088.1| 30S ribosomal protein S4 [Candidatus Nitrospira defluvii] Length = 208 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 117/213 (54%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M+K ++ RR GE L+ + K + RSY PG HGQ R + S + LQLR Sbjct: 1 MAKYSGPVCRLCRREGEKLFLKGSRCMTEKCAIERRSYPPGQHGQAR-QRTSDYSLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+K+ YG + E +FR IF+ A+R G T L+ LE RLD +VYR F + ARQ Sbjct: 60 KQKLKRIYG-LQECQFRGIFERAERQAGVTGDTLLRLLECRLDNVVYRLGFGASRKEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 VNH H+++NGR V K GD +EV+QKS++L + A + R +PE++ ++ Sbjct: 119 LVNHGHMMINGRKVKAPGALVKAGDSVEVRQKSRELLPIQGALAAVDGRGIPEWLELDRT 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T +P+ + + PV +VVE YSR Sbjct: 179 ACKGTIRSLPTK-EHIVLPV--NEQMVVELYSR 208 >gi|63191843|gb|AAY34881.1| small ribosomal protein subunit 4 [Tridontium tasmanicum] Length = 199 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKIPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRHVLV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHVLV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 NNRIVDIPSYRCKPQDFITINNRKKSQVMIAKNIDFSQKSKIPNHLTFNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|269469225|gb|EEZ80756.1| ribosomal protein S4 [uncultured SUP05 cluster bacterium] Length = 208 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 16/215 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHG-QRRKSKPSYFGLQL 52 M++ K+ RR G +L+ + K + PG+HG R+ K + +GLQL Sbjct: 1 MARYTGPTCKLARREGTDLFLKSGIRSLDSKCKITQ---LPGMHGANARRQKGTEYGLQL 57 Query: 53 RAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAA 112 R KQK+++ YG I EK+FR +K+A + +G T NL+S LE RLD +VYR F T A Sbjct: 58 REKQKVRRIYG-ILEKQFRLYYKKASQKKGSTGDNLLSLLECRLDNVVYRMGFGATRAEA 116 Query: 113 RQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVN 171 RQ V+H+ +LVNG VNI SY+ D I V++KSK+ + + A +LA + E++ V+ Sbjct: 117 RQLVSHKSILVNGSIVNIPSYQVSANDEISVREKSKKQSRIQLAVELAEQSGQVEWVDVD 176 Query: 172 HDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + F +P+ ++ +L+VE YS+ Sbjct: 177 NKALKGVFKNVPARDD---LSSDIEEHLIVELYSK 208 >gi|11878072|gb|AAG40784.1| small ribosomal protein 4 [Sphagnum cuspidatum] gi|20531047|gb|AAM27348.1| ribosomal protein 4 [Sphagnum cuspidatum] Length = 192 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P + SY + K S + ++L KQK++ +YG I+E++ Sbjct: 1 ILRRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI Sbjct: 57 LKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 117 PSYRCKPQDFITIKDRQKSQAIITRSMDDSRGYKTPNHLTLDSSQKKGSVNQIIDR---E 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|28194693|gb|AAO33608.1|AF480963_1 ribosomal protein S4 [Anoectangium aestivum] Length = 196 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSEVMITKNVDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|223038545|ref|ZP_03608839.1| ribosomal protein S4 [Campylobacter rectus RM3267] gi|255321747|ref|ZP_05362902.1| ribosomal protein S4 [Campylobacter showae RM3277] gi|222880402|gb|EEF15489.1| ribosomal protein S4 [Campylobacter rectus RM3267] gi|255301227|gb|EET80489.1| ribosomal protein S4 [Campylobacter showae RM3277] Length = 208 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 89/213 (41%), Positives = 122/213 (57%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR+G +L + KS ++ R Y PG HGQRR K S +GLQLR Sbjct: 1 MARYRGPVEKLERRLGVSLALKGERRLAGKSALDKRPYAPGQHGQRRS-KISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FR +F+EA R G+T L+ LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRRLFQEAARREGNTGALLVQLLEQRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V H H+LVNG+ V+I SYR + G +EV +KSK ++ A L A+ + ++ V D Sbjct: 119 LVTHGHILVNGKRVDIPSYRVQAGAKVEVIEKSKNNPQIVRAIDLTAQTGIVAWVDVEKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P ++V PV + +VE YS+ Sbjct: 179 KKFGIFTRTPER-EEVVIPV--EERFIVELYSK 208 >gi|63191657|gb|AAY34790.1| small ribosomal protein subunit 4 [Abietinella abietina] Length = 194 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKNQQKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|121761712|gb|ABM64943.1| ribosomal protein S4 [Plagiomnium undulatum] Length = 195 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPQLKSSSI---NPSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKTKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLKKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|20531124|gb|AAM27382.1| ribosomal protein 4 [Hedwigia ciliata] Length = 194 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 3 IIRRLGTLPGLTNKTPQLKSSSI---NQSTPNKKISQYRIRLEEKQKLRFHYG-ITERQL 58 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVN R V+I Sbjct: 59 LNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMASTIPGARQLVNHRHILVNDRIVDI 118 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 119 PSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLQKKGLVNQI---LDRE 175 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 LIGLKINELLVVEYYSR 192 >gi|34558005|ref|NP_907820.1| 30S ribosomal protein S4 [Wolinella succinogenes DSM 1740] gi|41017817|sp|Q7M8F6|RS4_WOLSU RecName: Full=30S ribosomal protein S4 gi|34483723|emb|CAE10720.1| 30S RIBOSOMAL PROTEIN S4 [Wolinella succinogenes] Length = 208 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR G +L + KS + R Y PG HGQRR K S +GLQLR Sbjct: 1 MARYRGPVEKIERRFGVSLNLKGERRLAGKSSLEKRPYAPGQHGQRRS-KISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIF+EA+R G+T LI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRSIFQEANRLEGNTGELLIKLLERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H HVLV+G+ VNI SY G +E+++KSK V + +L + + ++ V+ Sbjct: 119 MVSHGHVLVDGKRVNIPSYMVLPGQKVEIREKSKNNPQVQRSIELTKQTGIAPWVDVDQA 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F R+P ++V PV + L+VE YS+ Sbjct: 179 KVFGIFTRLPER-EEVVIPV--EERLIVELYSK 208 >gi|194033151|ref|YP_002000489.1| ribosomal protein S4 [Brachypodium distachyon] gi|193075559|gb|ACF08642.1| ribosomal protein S4 [Brachypodium distachyon] Length = 201 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K+P G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRLKKIRRLGALPGLTRKTP----KSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMAATIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR VNI S+RCK D+I K + + V + ++ +P++++++ Sbjct: 116 ILVNGRIVNIPSFRCKPRDIITTKDNQRSQSLVQNSIASSDPGKLPKHLTIDTLEYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 NKI---LDRKWVGLKINELLVVEYYSR 199 >gi|37960577|gb|AAP70658.1| small ribosomal protein 4 [Sphagnum aongstroemii] Length = 195 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P + SY + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTSKIPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|63191791|gb|AAY34855.1| small ribosomal protein subunit 4 [Tetrodontium brownianum] Length = 194 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K+ RR+G K+P + Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKVIRRLGVLPGLTIKTPQSKSGYI---NPSVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R TI ARQ VNHRH+LVN V Sbjct: 57 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMALTIPGARQLVNHRHILVNNHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K + + +++ VP ++++N ++ L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQNIIAKNIDFSQKYKVPNHLTLNSSQKKGLINQV---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|257095016|ref|YP_003168657.1| 30S ribosomal protein S4 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047540|gb|ACV36728.1| ribosomal protein S4 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 209 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K + RR GE L+ + K + RSY PG HGQ+ + S +G+ LR Sbjct: 1 MARNLDPKCRQCRREGEKLFLKGEKCFTDKCAIERRSYAPGQHGQKSGQRLSDYGVHLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG + E +FR ++KEADR RG T L+ LESRLD++ YR F + +RQ Sbjct: 61 KQKIRRIYG-VLEGQFRKVYKEADRRRGVTGEVLLQLLESRLDSVAYRMGFAASRSESRQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL-EASQLAERDVPEYISVNHD 173 V H VLVNGR VNI SY+ + GDV+EV +K+K V + R PE++ V+ Sbjct: 120 VVRHNGVLVNGRRVNIPSYQVRPGDVVEVCEKAKAHLRVKAALAAAEARGFPEWVEVDAK 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P + P + +LV+E YS+ Sbjct: 180 AAKGVYKAHPERSE---LPPTINESLVIELYSK 209 >gi|237751463|ref|ZP_04581943.1| 30S ribosomal protein S4 [Helicobacter bilis ATCC 43879] gi|229372829|gb|EEO23220.1| 30S ribosomal protein S4 [Helicobacter bilis ATCC 43879] Length = 208 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ KI+RR+G +L + KS R YGPG HG R+ K S +GLQLR Sbjct: 1 MARYRGPVEKIERRLGVSLALKGERRLAGKSAREKRDYGPGQHG-MRRGKISDYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG ISEK+FRSIFKEA+R G+T NLI LE RLD +VYR F T ARQ Sbjct: 60 KQKAKFMYG-ISEKQFRSIFKEANRQEGNTGENLIRLLELRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHD 173 V H H+LV+G+ V+I S++ K+G +EV++KSK ++ + L + + ++ ++ D Sbjct: 119 LVTHGHILVDGKRVDIPSFQIKQGQKVEVREKSKNNVQIVRSLDLTDQIGIVPWVDIDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + + ++ L+VE YS+ Sbjct: 179 KKFGIFTRNPERSE---VEIPIEERLIVELYSK 208 >gi|33413201|emb|CAD86736.1| ribosomal protein small subunit 4 [Paraleucobryum longifolium] Length = 191 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 LNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I ++ + K A +++ +++ +P +++ + +I L Sbjct: 116 PSYRCKPQDFITIEDRQKSQAMIIKNIDFSQKYKIPNHLTFSSLEKKGLVNQI---LDQE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|67036010|gb|AAY62931.1| small ribosomal protein subunit 4 [Entodontopsis leucostega] Length = 197 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD ++R PTI ARQ +NHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEILLQLLEMRLDNXIFRLGMAPTIPGARQLINHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKNQRKSETIISKNMEFYQKYKIPNHLTYSFLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|19551798|ref|NP_599800.1| 30S ribosomal protein S4 [Corynebacterium glutamicum ATCC 13032] gi|62389453|ref|YP_224855.1| 30S ribosomal protein S4 [Corynebacterium glutamicum ATCC 13032] gi|26399381|sp|Q8NSV4|RS4_CORGL RecName: Full=30S ribosomal protein S4 gi|21323328|dbj|BAB97956.1| Ribosomal protein S4 and related proteins [Corynebacterium glutamicum ATCC 13032] gi|41324787|emb|CAF19269.1| RIBOSOMAL PROTEIN S4 [Corynebacterium glutamicum ATCC 13032] Length = 201 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+ +L G R Y PG G+ R K S + LQL+ KQK + Sbjct: 1 MARYTGPATRKSRRLRVDLVGGDM-AFERRPYPPGQAGRAR-IKESEYLLQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 IYG-VMEKQFRRYYAEANRRAGKTGENLVVLLESRLDNVVYRAGLANTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 VNG+++++ S+R + D+I V++KS+++ EA LA+ VP ++ V +N+ Sbjct: 118 FTVNGKAIDVPSFRVSQYDIINVREKSQKMNWFEEAQDNLADAVVPAWLQVVPENLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + + +Q L+VEFYS+ Sbjct: 178 HQLPERAQ---IDIPLQEQLIVEFYSK 201 >gi|18920729|gb|AAL82409.1| ribosomal protein system 4 [Amblystegium fluviatile] Length = 197 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 CIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|63191761|gb|AAY34840.1| small ribosomal protein subunit 4 [Cyrtopus setosus] Length = 194 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+ S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTSQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIINKNIDFYQKYKIPNHLTYSSLEKKGFVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|222103412|gb|ACM44235.1| small ribosomal protein subunit 4 [Tetraphis pellucida] gi|222103414|gb|ACM44236.1| small ribosomal protein subunit 4 [Tetraphis pellucida] Length = 194 Score = 243 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGVLPGLTIKTPQLKSGYI---NPSVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLKYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K + + +++ +P ++++N ++ L Sbjct: 117 NIPSYRCKPQDFITIKDRQKSQNVIAKNMDFSQKYKIPNHLTLNSLQKKGLVNQV---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 REFIDLKINELLVVEYYSR 192 >gi|63191817|gb|AAY34868.1| small ribosomal protein subunit 4 [Rhexophyllum subnigrum] Length = 199 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P R + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGTLPGLSNKIP---RLKSSSTNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 NNRIVDIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKSKIPNHLTFNFLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|328541086|gb|AEB21767.1| ribosomal protein S4 [Zoopsis liukiuensis] Length = 186 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 13/188 (6%) Query: 20 WGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADR 79 +PKS N RS K S + ++L KQK++ +YG ++E++ + A + Sbjct: 9 TLKPKSSYNDRS--------TSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKYVRIARK 59 Query: 80 SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGD 139 ++G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I SY C+ GD Sbjct: 60 AKGSTGQVLLQLLEMRLDNTIFRLGMASTIPEARQLVNHGHIAINHNIVDIPSYNCEPGD 119 Query: 140 VIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPN 198 +I ++ K K + +++ L + +P +++ + + + + ++ + + Sbjct: 120 IITIRDKQKSQSVIIKNINLFQNLKIPSHLTFDSIKLCGSINQ---TINCEWINLKINEL 176 Query: 199 LVVEFYSR 206 LVVE+YSR Sbjct: 177 LVVEYYSR 184 >gi|323466846|gb|ADX70533.1| 30S ribosomal protein S4 [Lactobacillus helveticus H10] Length = 203 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G+ N + LE RLD+IVYR T ARQ V+H Sbjct: 60 MYG-LNERQFRTLFTRAGKIREGEHGTNFMILLERRLDSIVYRLGLATTREQARQLVSHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDESLVVEWYNK 201 >gi|157785989|gb|ABV74168.1| small ribosomal protein 4 [Hypopterygium tamarisci] gi|157785991|gb|ABV74169.1| small ribosomal protein 4 [Hypopterygium tamarisci] Length = 197 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVNG Sbjct: 57 TERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNG 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 YIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LNRESIGLKINELLVVEYYSR 195 >gi|28194749|gb|AAO33636.1|AF480991_1 ribosomal protein S4 [Geheebia gigantea] Length = 196 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +S K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGT-LPGLSNKIPHLKSNSTNQ--STSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVDIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|46486566|gb|AAS98719.1| ribosomal protein subunit 4 [Mniodendron camptotheca] Length = 195 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+ ++ + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTAQLKSNFI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ ++ +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTIISKNLDFYQKYKIPNHLTYSYLEKKGFVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|3098240|gb|AAC15568.1| small ribosomal protein 4 [Leptotheca gaudichaudii] Length = 195 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNHI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQAIINKNLDFYQKYKIPNHLTYNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|172040040|ref|YP_001799754.1| 30S ribosomal protein S4 [Corynebacterium urealyticum DSM 7109] gi|226697828|sp|B1VEY1|RS4_CORU7 RecName: Full=30S ribosomal protein S4 gi|171851344|emb|CAQ04320.1| 30S ribosomal protein S4 [Corynebacterium urealyticum DSM 7109] Length = 201 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+ +L G +S R Y PG G+ R K S + +QL+ KQK + Sbjct: 1 MARYTGPVTRKSRRLRVDLVGGDRS-FERRPYPPGQAGRAR-IKESEYLIQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+ G T NL+ LE+RLD ++YRA T ARQ V+H H Sbjct: 59 TYG-VMEKQFRRYYAEANAMPGKTGDNLVILLEARLDNVIYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATF 179 VNG+ +N+ S+R + D+I+V+ +S+ + EA L + +VP ++ V + Sbjct: 118 FTVNGKKINVPSFRVSQYDIIDVRDRSRSMLWFDEAQDNLVDANVPAWLQVVPSTLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + + +Q L+VE+YS+ Sbjct: 178 HQLPERAQ---IDIPLQEQLIVEYYSK 201 >gi|23504383|emb|CAC81062.1| small ribosomal protein 4 [Dendrocyathophorum decolyi] Length = 198 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P + + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGALPGLTNKTPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ +NH+H+LVN Sbjct: 57 ITERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLINHKHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K A + + +L ++ +P ++ N +I Sbjct: 117 DYIVDIPSYRCKPQDFITIKNQRKSEAIINKNIELYQKYKIPNHLIYNSLEKKGLVNQI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|58337098|ref|YP_193683.1| 30S ribosomal protein S4 [Lactobacillus acidophilus NCFM] gi|75507617|sp|Q5FKX2|RS4_LACAC RecName: Full=30S ribosomal protein S4 gi|58254415|gb|AAV42652.1| 30s ribosomal protein S4 [Lactobacillus acidophilus NCFM] Length = 203 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD+IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFIRAGKIREGQHGINFMILLERRLDSIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K KSK L + +A + A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKDKSKNLQQIRDALE-ATTARPSFVSFDENKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDESLVVEWYNK 201 >gi|42556464|gb|AAS19827.1| small ribosomal protein 4 [Neotrichocolea bissetii] Length = 191 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTGKILKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N +VNI Sbjct: 57 KYVCIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNDTVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + L ++ +P +++ + + + ++ Sbjct: 117 SYNCEPGDIITIRNKEKSQSIITRNINLFQKLKIPNHLTFDSTQLRGSVNQMIHR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IHLKINELLVVEYYSR 189 >gi|3914867|sp|O36052|RR4_PATSQ RecName: Full=30S ribosomal protein S4, chloroplastic gi|2292982|emb|CAA92557.1| ribosomal protein S4 [Patersonia sp. 'Lejeune 1997'] Length = 196 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P + G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTSKRPRS----GNDLKNQLRSVKRSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ A + +G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVHIAGKVKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLE---ASQLAERDVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D+I K K K A + +S + ++P +++++ +I Sbjct: 116 VDIPSYRCKPQDIITTKDKQKSKALIQNYIASSTQPQEELPNHLTIDPFQYKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 -RDSKWIGLKINELLVVEYYSR 194 >gi|293634057|gb|ADE60408.1| ribosomal protein subunit 4 [Pogonatum urnigerum] Length = 192 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 57 LNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGIAPTIPGARQLVNHKHILVNDRIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFITIKNRQESQAIITKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|227345141|gb|ACP28123.1| small ribosomal protein 4 [Eotrichocolea polyacantha] Length = 191 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+ +Y K S + ++L KQK++ +YG ++E++ Sbjct: 2 RRLGALPGLTNKTLKPKSNYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLK 57 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ +N V+I S Sbjct: 58 YLRIARKTKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISINNEIVDIPS 117 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 Y C+ GD I ++ K K + + + L ++ +P +++ + + + +I + Sbjct: 118 YNCEPGDTITIRNKQKSQSIITKNINLFQKLKIPSHLTFDLTQLRGSVNQIINR---EWI 174 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 HLKINELLVVEYYSR 189 >gi|157689554|gb|ABV65333.1| ribosomal protein S4 [Schinus terebinthifolius] Length = 194 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTRKKP----RAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGLVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I + A + + ++P++++++ +I S Sbjct: 116 VDIPSYRCKPRDIITARDDQNSRALIQNYLDSSHHEELPKHLTLHAVQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|77862563|gb|ABB04554.1| small ribosomal protein 4 [Wiesnerella denudata] Length = 201 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + Y + K S + ++L KQK++ +YG ++E Sbjct: 7 RVKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 62 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N + Sbjct: 63 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMSPTIPGARQLVNHRHILINNNT 122 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 ++I SY CK DVI +K ++K + + + ++ +P +++ + + +I Sbjct: 123 IDIPSYNCKPKDVITIKDRAKSQSIITKNLNSFQKPKIPNHLTFDLMQIKGLVNQIIDR- 181 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 182 --EWIYLKINELLVVEYYSR 199 >gi|313573576|emb|CAT03210.1| ribosomal protein S4 [Chileobryon callicostelloides] Length = 196 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 117 IVDIPSYRCKPQDFITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|28194715|gb|AAO33619.1|AF480974_1 ribosomal protein S4 [Scopelophila cataractae] Length = 196 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVLFRLGIAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SY CK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 LVNIPSYCCKPQDFITIKDRQKSQALITKHIDFYQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|227345115|gb|ACP28110.1| small ribosomal protein 4 [Castanoclobos julaceus] Length = 191 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNH H+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHGHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GDVI V+ K K + + + L ++ + +++ + + + + ++ Sbjct: 117 SYNCESGDVITVRNKQKSQSIITKNINLFQKLKLSNHLTFDSTQLCGSINQ---TINRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|260102591|ref|ZP_05752828.1| 30S ribosomal protein S4 [Lactobacillus helveticus DSM 20075] gi|260083618|gb|EEW67738.1| 30S ribosomal protein S4 [Lactobacillus helveticus DSM 20075] Length = 203 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 1 MSRYTGPSWKRSRRLGISLSGTGKE-IARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 59 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G+ N + LE RLD+IVYR T ARQ VNH Sbjct: 60 MYG-LNERQFRTLFIRAGKIREGEHGTNFMILLERRLDSIVYRLGLATTREQARQLVNHG 118 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K+KSK L V +A A P ++S + + M T Sbjct: 119 HITVDGKRVDIPSYEVSVGQTIGLKEKSKNLQQVKDALD-AVTARPSFVSFDDNKMEGTL 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 178 VRLPERDEMEP---EIDESLVVEWYNK 201 >gi|37548869|gb|AAO32703.1| ribosomal protein 4 [Pogonatum spinulosum] Length = 194 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P Y + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKIPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + + + + +++ +P +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQESQDIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|227903670|ref|ZP_04021475.1| 30S ribosomal protein S4 [Lactobacillus acidophilus ATCC 4796] gi|227868557|gb|EEJ75978.1| 30S ribosomal protein S4 [Lactobacillus acidophilus ATCC 4796] Length = 235 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K + R+Y PG HG + + S +G QL KQK++ Sbjct: 33 MSRYTGPSWKRSRRLGISLSGTGKE-LARRNYAPGQHGPNSRGRLSEYGQQLHEKQKLRW 91 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG ++E++FR++F A + G N + LE RLD+IVYR T ARQ VNH Sbjct: 92 MYG-LNERQFRTLFIRAGKIREGQHGINFMILLERRLDSIVYRLGLATTREQARQLVNHG 150 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ V+G+ V+I SY G I +K KSK L + +A + A P ++S + + M T Sbjct: 151 HITVDGKRVDIPSYEVSVGQTIGLKDKSKNLQQIRDALE-ATTARPSFVSFDENKMEGTL 209 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 210 VRLPERDEMEP---EIDESLVVEWYNK 233 >gi|63078609|gb|AAY29391.1| ribosomal protein S4 [Pseudosymblepharis richardsii] Length = 197 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSS---TSQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A + +G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKVKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R VNI SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 RIVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKSKIPNHLTFNSLEKKGIVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQELIGLKINELLVVEYYSR 195 >gi|63191683|gb|AAY34803.1| small ribosomal protein subunit 4 [Orthothecium chryseum] Length = 195 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|317134112|ref|YP_004123445.1| ribosomal protein S4 [Rhizanthella gardneri] gi|255985043|gb|ACU46590.1| ribosomal protein S4 [Rhizanthella gardneri] Length = 202 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G K P + L Q R K S + L+L KQK + Sbjct: 1 MSRYLGPCFKKIRRLGALPGLTNKIPRSR----SDLQIQLRSIKKSQYRLRLEEKQKFRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLKYVRIAGKTKGSTGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA--SQLAERDVPEYISVNHDNMVAT 178 +LVNG V+I +YRCK D+I K K + A +++ + ++P +++++ Sbjct: 116 ILVNGDIVDIPNYRCKPLDIIAAKDKERSKAMIIKNYLISSSHGELPNHLTMDSLQHKGF 175 Query: 179 FVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I S + + LVVE+YSR Sbjct: 176 VNQIIDSKCS---GLKINELLVVEYYSR 200 >gi|157785997|gb|ABV74171.1| small ribosomal protein 4 [Lopidium concinnum] gi|157786000|gb|ABV74172.1| small ribosomal protein 4 [Lopidium concinnum] Length = 198 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 7/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G KS + K S + ++L KQK++ +YG I+ Sbjct: 2 PRVRIIRRLGTLPGLTNKSAPQLKPSSINQ--STSNKKISQYRIRLEEKQKLRFHYG-IT 58 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVNG Sbjct: 59 ERQLLNYVRIARKAKGSTGEILLQLLEMRLDNIIFRLGMTPTIPGARQLVNHRHILVNGY 118 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K K K + + + + ++ + +++ + +I Sbjct: 119 IVDIPSYRCKPQDFITIKNKQKSESIISKNIEFYQKSKIANHLTYSSLEKKGLVNQI--- 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 LDRESIGLKINELLVVEYYSR 196 >gi|49182774|gb|AAT57849.1| small ribosomal protein [Symphyogyna sp. CD67] Length = 195 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G L G + +RS K S + ++L KQK++ +YG ++E Sbjct: 1 RGKIIRRLGA-LPGLSXEMIGSRSGYINQ--LAANKKISQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A ++G T L+ LE RLD IV+R PTI ARQ VNHRH++VN + Sbjct: 57 RQLLKYVRIARGAKGSTGQVLLQLLEMRLDNIVFRLGMAPTIPGARQLVNHRHIIVNDDT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SY CK DVI ++ + + + + + L ER +P +++ + + +I Sbjct: 117 VDIPSYNCKPQDVITIRDRRESQSVITKNINLFRERRIPNHLTFDSTRFCGSVNQIIDR- 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 --EWIGLKINELLVVEYYSR 193 >gi|18920735|gb|AAL82412.1| ribosomal protein system 4 [Catagonium nitens subsp. maritimum] Length = 197 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 2 PRVRIIRRLGALPGLSNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 57 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 58 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDC 117 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 118 IVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI--- 174 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 LDRESIGLKINELLVVEYYSR 195 >gi|20531109|gb|AAM27375.1| ribosomal protein 4 [Bryum caespiticium] Length = 193 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 2 IIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 57 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V+I Sbjct: 58 LNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRLVDI 117 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K + + ++ +P +++ N N I L Sbjct: 118 PSYRCKPQDFITIKDQQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNXI---LDRE 174 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 SIDLKINELLVVEYYSR 191 >gi|227345135|gb|ACP28120.1| small ribosomal protein 4 [Clasmatocolea humilis] Length = 191 Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 8/194 (4%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 R+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 3 RLGALPGLTSKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLLKY 58 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I SY Sbjct: 59 MRIARKAKGSTGEVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINNDIVDIPSY 118 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 C+ GD+I ++ K K + + + + +P +++ + + + ++ + Sbjct: 119 NCEPGDIITIRNKQKSQSIITKNINFFQELKIPSHLTFDSIKLRGSVNQMINR---EWVN 175 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 LKINELLVVEYYSR 189 >gi|28194721|gb|AAO33622.1|AF480977_1 ribosomal protein S4 [Trichostomum crispulum] Length = 196 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNS 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQVIITKNVDFSQKYKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|12642236|gb|AAK00200.1| rps4 [Aphanorrhegma serratum] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S Q K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGVLPGLTNKTPQLKSSSA----NQSTAKKISQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD IV+R PTI ARQ VNH HVLVN Sbjct: 56 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNIVFRLGMAPTIPGARQLVNHXHVLVNDCI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 ++I SYRCK D I VK + K A + + +++ VP +++ + +I L Sbjct: 116 LDIPSYRCKPEDXITVKNRQKSQAIITKNIDFSQKSKVPNHLTFDSTXKKGLVNQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+ SR Sbjct: 173 HRESIGLKINELLVVEYNSR 192 >gi|75858228|gb|ABA28688.1| small ribosomal protein 4 [Brevianthus flavus] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTGKTL---EPKSSSIDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A R++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYMRIARRAKGSTGQVLLQLLEMRLDNTIFRLGMSSTIPGARQLVNHRHISINDDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C GD I ++ K K + + + L ++ VP +++ + + + ++ + Sbjct: 117 SYNCGPGDSITIRNKQKSQSIITKNINLFQKLKVPSHLTFDSTQLRGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|148284289|ref|YP_001248379.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Boryong] gi|172047212|sp|A5CCV1|RS4_ORITB RecName: Full=30S ribosomal protein S4 gi|146739728|emb|CAM79558.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Boryong] Length = 207 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 98/206 (47%), Positives = 139/206 (67%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 M+K SK+K+ RR+G ++WG K +N ++Y PG G SKPS + L AKQ++K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEKDAINNKNYKPGQQGNSSSISKPSDYSKHLIAKQRLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG ISEK+FR+ FK A + G+T+ NL+ LE RLD +VYR PTIFAARQ V+H+ Sbjct: 61 SHYGRISEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQLVSHK 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +NI SYR K GD IE+ +++KQ+ V+ A R +PEY++ + + + F Sbjct: 121 HIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAISKKARRIPEYLAFDDEKFIGNF 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +R+PSS+ +VPYP Q NLVVEFYS Sbjct: 181 IRMPSSISEVPYPFDPQINLVVEFYS 206 >gi|29027204|gb|AAN47164.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027206|gb|AAN47165.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027208|gb|AAN47166.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027210|gb|AAN47167.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027212|gb|AAN47168.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027214|gb|AAN47169.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027216|gb|AAN47170.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027218|gb|AAN47171.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027222|gb|AAN47173.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027224|gb|AAN47174.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027226|gb|AAN47175.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027228|gb|AAN47176.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027230|gb|AAN47177.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027232|gb|AAN47178.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027234|gb|AAN47179.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027236|gb|AAN47180.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027238|gb|AAN47181.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIIGKNLDFYQKYKIPNHLTYNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|63078636|gb|AAY29404.1| ribosomal protein S4 [Tortella tortuosa] Length = 196 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PXVRIIRRLGTLPGLSNKTPHLKSSS---TNQSNSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITIKDRQKSQVMITKNVDFSQKFQIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|67035684|gb|AAY62773.1| small ribosomal protein subunit 4 [Holomitriopsis laevifolia] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGTLPGLTNKISQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNNYIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K + V + + +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFISIKNRQKSQSIVAKNIEFSQKYKVPNHLTFNSLEKKGVVNQI---LN 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HESIGLKINELLVVEYYSR 192 >gi|46811058|gb|AAT01847.1| small ribosomal protein 4 [Treubia lacunosa] Length = 197 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + Y + K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGVLPGLTNKTLKSKLGYI---NQSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+L+N Sbjct: 57 TERQLLKYVGIARKAKGSTGEVLLQLLEMRLDNIIFRLGLAFTIPGARQLVNHRHILINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 ++V+I SY CK D+I +K K + + + + +P +++ + + +I Sbjct: 117 KTVDIPSYHCKPKDLITIKNKPTSQLLITKNIDYSTKYKIPNHLTFDSVKKIGLVNQIID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 R---EFINLKINELLVVEYYSR 195 >gi|121761884|gb|ABM65027.1| ribosomal protein S4 [Plagiomnium tezukae] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|49182799|gb|AAT57861.1| small ribosomal protein [Sphaerocarpos texanus] Length = 192 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+ Y + K S + ++L KQK++ +YG ++E++ Sbjct: 1 IIRRLGALPGLTNKTLKTKSGYI---NQSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+L+N +V+I Sbjct: 57 LKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILINNNTVDI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SY CK DVI +K + K + + + ++ +P ++S + +I Sbjct: 117 PSYSCKPKDVITIKDRQKSQSIITKNINSFQKPKIPNHLSFDLIQFKGLVNQIIDR---E 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIYLKINELLVVEYYSR 190 >gi|12642256|gb|AAK00210.1| rps4 [Splachnobryum obtusum] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G L G +N +S K S + ++L KQK++ +YG I+E+ Sbjct: 1 CKIIRRLGT-LPGLSNKTLNLKSSFTNQ--SSSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R TI ARQ VNH+H+LVN R V Sbjct: 57 QLLNYVRIARKTKGSTGQILLQLLEMRLDNVLFRLGMATTIPGARQLVNHKHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K + + ++ +P ++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQKSQIMITKNVDFFQKSKIPSHLIFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|75858234|gb|ABA28691.1| small ribosomal protein 4 [Nardia compressa] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTGKTLKPKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ VN V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISVNNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I VK K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYSCELGDIITVKNKQKSQSIITKNINLFQKLKIPSHLTFDSIQLRGSVNQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|121761732|gb|ABM64953.1| ribosomal protein S4 [Plagiomnium venustum] gi|121761783|gb|ABM64978.1| ribosomal protein S4 [Plagiomnium venustum] gi|121761789|gb|ABM64981.1| ribosomal protein S4 [Plagiomnium venustum] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTIISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRDSIDLKINELLVVEYYSR 193 >gi|18920789|gb|AAL82439.1| ribosomal protein system 4 [Rhizofabronia sphaerocarpa] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD I++R PTI ARQ +NHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLINHRHILVNDFI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K K + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNKQNSQTIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NRESIGLKINELLVVEYYSR 193 >gi|270300671|gb|ACZ69414.1| ribosomal protein S4 [Radula jonesii] Length = 202 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTL---KPKSISIDRSMSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + A +G T LI LE RLD I++ P+I ARQ VNH+H Sbjct: 58 HYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPSIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++N +VNI SY C+ GD+I ++ + K + + L ++ ++P +++ + + + Sbjct: 117 FVINNFTVNIPSYNCELGDIITIRNRQKSKSIITRNMNLFQKLEIPNHLTFDSTQLRGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NQ---RIDCNSINFKINELLVVEYYSR 200 >gi|189501628|ref|YP_001957345.1| RNA-binding S4 domain-containing protein [Candidatus Amoebophilus asiaticus 5a2] gi|226697797|sp|B3EUJ7|RS4_AMOA5 RecName: Full=30S ribosomal protein S4 gi|189497069|gb|ACE05616.1| RNA-binding S4 domain protein [Candidatus Amoebophilus asiaticus 5a2] Length = 200 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 71/206 (34%), Positives = 114/206 (55%), Gaps = 6/206 (2%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ K KI RR E ++G P + ++Y PG HG+ RK K S + +QL K K K Sbjct: 1 MARYIGPKAKISRRFNEPIFG-PSKALQKKNYPPGQHGKIRKKK-SEYAIQLMEKGKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+F ++F +A + +G T L+ +LE+RLD +VYR PT +ARQ V+H+H Sbjct: 59 IYG-LLEKQFANLFYKAAKKKGVTGELLLQYLETRLDNVVYRLGITPTRRSARQLVSHKH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 + VNG+ VNI SY K GD+I + +K+K ++ E + ++ + M+ + Sbjct: 118 ITVNGKIVNIPSYALKVGDIIGLTEKTKSSNAITERISSHSHNKNNWLEWDSKQMIGKVM 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P + P + +VE YS+ Sbjct: 178 SLPHREE---IPEKINEQSIVELYSK 200 >gi|46811060|gb|AAT01848.1| small ribosomal protein 4 [Treubia lacunosoides] Length = 197 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ + Y + K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGILPGLTNKTLKSKLGYI---NQSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ A +++G T L+ LE RLD I++R TI ARQ VNHRH+L+N Sbjct: 57 TERQLLKYVGIARKAKGSTGEVLLQLLEMRLDNIIFRLGLAFTIPGARQLVNHRHILINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDNMVATFVRIPS 184 ++V+I SY CK D+I +K K + + + + +P +++ + + +I Sbjct: 117 KTVDIPSYHCKPKDLITIKNKPTSQLLITKNIDYSTKSQIPNHLTFDSVKKIGLVNQIID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 R---EFINLKINELLVVEYYSR 195 >gi|63191722|gb|AAY34821.1| small ribosomal protein subunit 4 [Anacolia webbii] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+I Sbjct: 57 NYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|37992431|gb|AAR06394.1| small ribosomal protein 4 [Beeveria distichophylloides] Length = 199 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGILPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K A + + + + +P +++ N +I Sbjct: 117 NKFIVDIPSYRCKPQDFITIKNQRKSEAIINKNIEFYPKSKIPNHLTYNFLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|28194695|gb|AAO33609.1|AF480964_1 ribosomal protein S4 [Leptobarbula berica] Length = 196 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLSNKTPHLKSSS---TNQSSSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFISIKDRQKSQVMITKNIDFSQKSKIPNHLTFNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LNQESIGLKINELLVVEYYSR 194 >gi|260772120|ref|ZP_05881037.1| SSU ribosomal protein S4p (S9e) [Vibrio metschnikovii CIP 69.14] gi|260612987|gb|EEX38189.1| SSU ribosomal protein S4p (S9e) [Vibrio metschnikovii CIP 69.14] Length = 202 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 121/207 (58%), Gaps = 10/207 (4%) Query: 5 ESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 K K+ RR G +L+ + ++T+ PG+HG R+ + S +G+QLR KQK+++ Sbjct: 1 MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGVHG-ARRGRLSEYGVQLREKQKVRR 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR+ +KEA R +G+T NL+ LE RLD +VYR F T ARQ V+H+ Sbjct: 60 IYG-VLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYRMGFGATRAEARQLVSHKA 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNG VN+ S+ DV+ +++K+K+ + + A ++A +R+ P +I V+ M TF Sbjct: 119 ILVNGSVVNVPSFNVAANDVVAIREKAKKQSRIKAALEVAEQREKPTWIEVDASQMEGTF 178 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P + L+VE YS+ Sbjct: 179 KRKPER---SDLSADINEQLIVELYSK 202 >gi|92417465|gb|ABE76828.1| ribosomal protein subunit 4 [Jaegerina scariosa] Length = 197 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 10/203 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K P G Q K S + ++L KQK++ +YG Sbjct: 1 GPRVRIIRRLGTLPGLTNKIPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG- 55 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 56 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 115 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 VNI SY+CK D I +K + K + + + ++ +P +++ N +I Sbjct: 116 DCIVNIPSYQCKSQDFITIKNQRKSETIINKNIEFYQKYKIPNHLTYNSLEKKGLVNQI- 174 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 --LNRESIDLKINELLVVEYYSR 195 >gi|37960595|gb|AAP70667.1| small ribosomal protein 4 [Sphagnum perichaetiale] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + +Y + K S + ++L KQK++ +YG I+ + Sbjct: 2 VRILRRLGVLPGLTSKTPQSKSNYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITXR 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|67035622|gb|AAY62742.1| small ribosomal protein subunit 4 [Dicnemon seriatum] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 10/200 (5%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISE 67 +I RR+G K+P G Q K S + ++L KQK++ +YG I+E Sbjct: 1 VRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A ++G T L+ LE R D +++R PTI ARQ VNHRH+LVN R Sbjct: 56 RQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + + A +++ +++ VP +++ + +I L Sbjct: 116 VNIPSYRCKPQDFITIKDRQESQAMIIKNIDFSQKSKVPNHLTFSSLEKKGLVNQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 DQESIGLKINELLVVEYYSR 192 >gi|170321467|gb|AAY62815.2| small ribosomal protein subunit 4 [Orthodontopsis bardunovii] Length = 203 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 ++ + +I RR+G L G +S K S + ++L KQK++ + Sbjct: 3 ARYRGPRVRIIRRLGA-LPGLTNKISQLKSSSINQ--STSNKKISQYRIRLEEKQKLRFH 59 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNH+H+ Sbjct: 60 YG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMASTIPGARQLVNHKHI 118 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN R V+I SYRCK D I +K + K A + + ++ +P +++ N Sbjct: 119 LVNDRIVDIPSYRCKPQDFITIKDRQKSQAIIDKNLDFYQKSKIPNHLTYNSLEKKGLVN 178 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + VE+YSR Sbjct: 179 QI---LXRESJGLKINELXXVEYYSR 201 >gi|46486546|gb|AAS98709.1| ribosomal protein subunit 4 [Mniodendron comosum] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+ ++ + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALAGLTNKTAQLKSNFI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + ++ +P +++ ++ +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQAIISKNLDFYQKYKIPNHLTYSYLEKKGFVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|189184338|ref|YP_001938123.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Ikeda] gi|226699098|sp|B3CU42|RS4_ORITI RecName: Full=30S ribosomal protein S4 gi|189181109|dbj|BAG40889.1| 30S ribosomal protein S4 [Orientia tsutsugamushi str. Ikeda] Length = 207 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 97/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMK 59 M+K SK+K+ RR+G ++WG K +N ++Y PG G SKPS + L AKQ++K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEKDAINNKNYKPGQQGNSSSVSKPSDYSKHLVAKQRLK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +YG I EK+FR+ FK A + G+T+ NL+ LE RLD +VYR PTIFAARQ V+H+ Sbjct: 61 SHYGRIPEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQLVSHK 120 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+ VNG+ +NI SYR K GD IE+ +++KQ+ V+ A R +PEY++ + + + F Sbjct: 121 HIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAISKKARRIPEYLAFDDEKFIGNF 180 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYS 205 +R+PSS+ +VPYP Q NLVVEFYS Sbjct: 181 IRMPSSISEVPYPFDPQINLVVEFYS 206 >gi|146261591|gb|ABQ15105.1| ribosomal protein S4 [Sedum rubrotinctum] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PRFKKIRRLGALPGLTSKRP----RVGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLSMASTIPGARQLVNHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I K K + + ++P++++++ +I S Sbjct: 116 IVDIPSYRCKPSDIITAKDDKKSRTLIQNSIDSTPHEELPKHLTLHVFQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---GVGLKINELLVVEYYSR 193 >gi|37960615|gb|AAP70677.1| small ribosomal protein 4 [Sphagnum tenerum] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + Y K S + + L KQK++ +YG I+E+ Sbjct: 2 VRIXRRLGVLPGLTSKTPQSKSXYI---XQPISNKKVSQYRIXLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|26421781|gb|AAN78149.1| ribosomal protein S4 [Tortula vahliana] gi|26421783|gb|AAN78150.1| ribosomal protein S4 [Tortula vahliana] gi|26421785|gb|AAN78151.1| ribosomal protein S4 [Tortula vahliana] gi|26421807|gb|AAN78162.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K P + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGALPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I + + K + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|225020483|ref|ZP_03709675.1| hypothetical protein CORMATOL_00490 [Corynebacterium matruchotii ATCC 33806] gi|224946872|gb|EEG28081.1| hypothetical protein CORMATOL_00490 [Corynebacterium matruchotii ATCC 33806] Length = 203 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 9/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+ +L G K + R Y PG G+ R K S + LQL+ KQK K Sbjct: 1 MARYTGPVTRKSRRLRVDLVGGSK-AYDKRPYPPGQAGRNR-IKESEYLLQLQEKQKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLEKQFRRYYAEANRMPGKTGENLVILLEARLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL---AERDVPEYISVNHDNMVA 177 LVNG+ VN+ SYR + D+I+V+ KS+ + EA++ A++ +P ++ V + Sbjct: 118 FLVNGKKVNVPSYRVSQYDIIDVRDKSRTMLWFEEATENLVDADKVIPAWLQVVPSTLRI 177 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V +Q L+VE YS+ Sbjct: 178 LVHQLPERAQ---IDVPLQEQLIVELYSK 203 >gi|157785995|gb|ABV74170.1| small ribosomal protein 4 [Hypopterygium tamarisci] Length = 197 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVNG Sbjct: 57 TERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNG 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I Sbjct: 117 YIVDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSFLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LNRESIGLKINELLVVEYYSR 195 >gi|219849861|ref|YP_002464294.1| 30S ribosomal protein S4 [Chloroflexus aggregans DSM 9485] gi|254764578|sp|B8G6P9|RS4_CHLAD RecName: Full=30S ribosomal protein S4 gi|219544120|gb|ACL25858.1| ribosomal protein S4 [Chloroflexus aggregans DSM 9485] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 77/210 (36%), Positives = 109/210 (51%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 M++ K+ RR+G + + + +N R PG HG R+ S +G QLR KQK K Sbjct: 1 MARFRGPVGKVSRRLGIGITEKGQRILNKRPDPPGQHGAAARRRALSDYGAQLREKQKAK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR +F++A R G T L+S LE RLD +VYR F T ARQ VNH Sbjct: 61 FIYG-VLERQFRRLFEQAARRSGVTGEYLLSLLERRLDNVVYRLGFATTRAQARQLVNHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ---LAERDVPEYISVNHDNMV 176 H++V+GR NI SY K G VI V+ +S+ L + PE++ +N + Sbjct: 120 HIVVDGRKTNIPSYTVKVGQVIAVRPQSRSRTYFKNLVDSGVLNKHRAPEWLRLNPAELS 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T V +P + L+VEFYSR Sbjct: 180 GTVVALPRR---EDAEAGINEQLIVEFYSR 206 >gi|295099742|emb|CBK88831.1| SSU ribosomal protein S4P [Eubacterium cylindroides T2-87] Length = 202 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 4/206 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K RR+G ++ + + R+Y PG HG R++K + +GLQL+ KQ+++ Sbjct: 1 MSRNTGSTWKKSRRLGFSILETGEE-LTRRNYVPGQHGNARRAKLTNYGLQLQEKQRIRH 59 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 Y +SEK+F + + +A + G + NL+ LESRLD +VYR F T ARQ VNH H Sbjct: 60 TY-QLSEKQFYNTYIKASKRPGPSGENLLVMLESRLDNLVYRMGFARTRRGARQLVNHGH 118 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LVNG+ V+I SY+ K G VIEV+++ K ++ V EA + A V ++ V+ +N T+V Sbjct: 119 ILVNGKKVDIPSYQVKPGTVIEVRERDKNMSVVAEALEAATTRV-AFVEVDAENKKGTYV 177 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R P ++ + LVVEFY+R Sbjct: 178 RYPER-NELFTAQPINELLVVEFYNR 202 >gi|28194709|gb|AAO33616.1|AF480971_1 ribosomal protein S4 [Phascum curvicolle] Length = 196 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G L G + +S K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGT-LPGLSNKIPHLKSNSTNQ--STSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRVARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + +++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMITKNVDFSQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|63101099|gb|AAY33174.1| small ribosomal protein 4 [Jaffueliobryum latifolium] gi|67035692|gb|AAY62777.1| small ribosomal protein subunit 4 [Indusiella thianschanica] gi|322719581|gb|ADX07727.1| small ribosomal protein subunit 4 [Indusiella thianschanica] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ +NHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLNMAPTIPGARQLINHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A V++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKARQKSQAMVIKNVDFSQKDKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HGSIGLKINELLVVEYYSR 192 >gi|118626053|emb|CAL39335.1| small ribosomal protein 4 [Adelanthus lindenbergianus] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY + K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSY---VDRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMAPTIPGARQLVNHRHISVNNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ G++I +K K K + + + L + +P +++ + + + ++ Sbjct: 117 SYNCEPGNIITIKNKQKSQSIITKNINLFQNLKIPSHLTFDSIQLRGFVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|26421769|gb|AAN78143.1| ribosomal protein S4 [Tortula muralis] gi|26421771|gb|AAN78144.1| ribosomal protein S4 [Tortula muralis] gi|26421775|gb|AAN78146.1| ribosomal protein S4 [Tortula muralis] gi|26421777|gb|AAN78147.1| ribosomal protein S4 [Tortula muralis] gi|26421779|gb|AAN78148.1| ribosomal protein S4 [Tortula muralis] gi|26421787|gb|AAN78152.1| ribosomal protein S4 [Tortula muralis] gi|26421791|gb|AAN78154.1| ribosomal protein S4 [Tortula muralis] gi|26421793|gb|AAN78155.1| ribosomal protein S4 [Tortula muralis] gi|26421795|gb|AAN78156.1| ribosomal protein S4 [Tortula muralis] gi|26421799|gb|AAN78158.1| ribosomal protein S4 [Tortula muralis] gi|26421801|gb|AAN78159.1| ribosomal protein S4 [Tortula muralis] gi|26421803|gb|AAN78160.1| ribosomal protein S4 [Tortula muralis] gi|26421805|gb|AAN78161.1| ribosomal protein S4 [Tortula muralis] gi|26421811|gb|AAN78164.1| ribosomal protein S4 [Tortula muralis] gi|26421813|gb|AAN78165.1| ribosomal protein S4 [Tortula muralis] gi|26421815|gb|AAN78166.1| ribosomal protein S4 [Tortula muralis] gi|26421817|gb|AAN78167.1| ribosomal protein S4 [Tortula muralis] gi|26421819|gb|AAN78168.1| ribosomal protein S4 [Tortula muralis] gi|26421821|gb|AAN78169.1| ribosomal protein S4 [Tortula freibergii] gi|26421823|gb|AAN78170.1| ribosomal protein S4 [Tortula freibergii] Length = 195 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K P + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I + + K + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|63101095|gb|AAY33172.1| small ribosomal protein 4 [Cardotiella subappendiculata] Length = 197 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNH 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K + + ++ +P ++ N +I Sbjct: 117 RIVDIPSYRCKPLDFITIKDRRKSQDIINKNIDFYQKYKIPNHLIYNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRELIGLKINELLVVEYYSR 195 >gi|289608314|emb|CBI60616.1| unnamed protein product [Sordaria macrospora] Length = 190 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 118/192 (61%), Positives = 144/192 (75%), Gaps = 3/192 (1%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKR S+K+K+DRR+GEN+WGRPKSPVN R YGPG HGQRRK K S FG QLRAKQK+K Sbjct: 1 MSKRSSAKYKLDRRLGENIWGRPKSPVNKREYGPGQHGQRRKGKMSDFGTQLRAKQKLKG 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD++EK+F+ ++EA R +GDT NLI LE RLD IVYRAKF PT++AARQ V+H H Sbjct: 61 YYGDVTEKQFKRTYEEASRMKGDTGQNLIGLLEQRLDMIVYRAKFAPTVWAARQLVSHGH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 V VNG NI S RC GD I + K++++A VLEA LAERD+PEYI + TF Sbjct: 121 VRVNGVKCNIASRRCYVGDEISLGTKAQEMALVLEAQTLAERDIPEYIGADGTK--VTFN 178 Query: 181 RIPSSLKDVPYP 192 R+P +L +VPYP Sbjct: 179 RVP-TLDEVPYP 189 >gi|157689472|gb|ABV65292.1| ribosomal protein S4 [Eucryphia lucida] Length = 193 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P G Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTSKRP----RTGSDFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKCVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I K + K A + A ++ ++++++ +I S Sbjct: 116 DIPSYRCKPRDIITAKDEQKSRALIQNYLDSSAHEELSKHLTLHPVQYKGLVNQIIDSK- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WVGLKINELLVVEYYSR 191 >gi|63191835|gb|AAY34877.1| small ribosomal protein subunit 4 [Streptopogon calymperes] Length = 199 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + +I RR+G L G + +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVRIIRRLGT-LPGLSNKIPHLKSSSINQ--STSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMALTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SYRCK D I + + K + + +++ +P ++ N +I Sbjct: 117 NDRIVNIPSYRCKPQDFITISDRKKSQVIITKNVDSSQKSKIPNHLIFNSLEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LNQESIGLKINELLVVEYYSR 197 >gi|328541036|gb|AEB21742.1| ribosomal protein S4 [Isolembidium anomalum] Length = 199 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K Y K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + A +++G T + LE R D + R TI ARQ VNHRH+ + Sbjct: 58 -LTERQSLKYVRIARKAKGSTGQVSLQLLEMRPDNTILRLGMASTIPGARQLVNHRHIPI 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SY C+ GD+I +++K K + + + L +P +++ + + + + Sbjct: 117 NNNIVDIPSYNCELGDIITIREKQKSQSVITKNINLFRNLKIPSHLTFDSIKLCGSINQ- 175 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 ++ + + LVVE+YSR Sbjct: 176 --TINREWIDLKINELLVVEYYSR 197 >gi|163847949|ref|YP_001635993.1| 30S ribosomal protein S4 [Chloroflexus aurantiacus J-10-fl] gi|222525829|ref|YP_002570300.1| 30S ribosomal protein S4 [Chloroflexus sp. Y-400-fl] gi|189045369|sp|A9WH92|RS4_CHLAA RecName: Full=30S ribosomal protein S4 gi|254764579|sp|B9LJF8|RS4_CHLSY RecName: Full=30S ribosomal protein S4 gi|163669238|gb|ABY35604.1| ribosomal protein S4 [Chloroflexus aurantiacus J-10-fl] gi|222449708|gb|ACM53974.1| ribosomal protein S4 [Chloroflexus sp. Y-400-fl] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 111/210 (52%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 M++ K+ RR+G + + +N RS PG HG R+ + S +G+QLR KQK K Sbjct: 1 MARYIGPVGKVSRRLGIGITEKGLRILNKRSDPPGQHGAAARRRQLSDYGMQLREKQKAK 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR +F++A R G T L+S LE RLD +VYR F T ARQ VNH Sbjct: 61 FLYG-VLERQFRRLFEQASRRSGVTGEYLLSLLERRLDNVVYRLGFATTRAQARQLVNHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQ---LAERDVPEYISVNHDNMV 176 H++V+GR NI SY K G VI V+ +S+ L + PE++ +N + Sbjct: 120 HIVVDGRKTNIPSYTVKVGQVIAVRPQSRSRTYFKNLVDSGVLNKHRAPEWLRLNAAELS 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T V +P + L+VEFYSR Sbjct: 180 GTVVALPRR---EDAEAGINEQLIVEFYSR 206 >gi|67035861|gb|AAY62857.1| small ribosomal protein subunit 4 [Papillidiopsis complanata] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 CKIIRRLGTLPGLTNKTPQIKSSSI---NQPISNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCMV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K K K + + + E+ +P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKNKRKSETIISKNIEFYEKSKIPNHLTYNSLEKKGLINQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|270300681|gb|ACZ69419.1| ribosomal protein S4 [Radula complanata] gi|270300683|gb|ACZ69420.1| ribosomal protein S4 [Radula complanata] gi|270300685|gb|ACZ69421.1| ribosomal protein S4 [Radula complanata] Length = 202 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ + + K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTL---KPKSISIDRSMSNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + A +G T LI LE RLD I++ PTI ARQ VNH+H Sbjct: 58 HYG-LTEKQLLKYVRIARNIKGSTGQVLIQLLEMRLDNIIFCLGLAPTIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 ++N +VNI SY C+ GD+I V+ + K + + + L ++ ++P +++ + + + Sbjct: 117 FVINNFTVNIPSYNCELGDIITVRNRHKSKSIITKNMNLFQKLEIPNHLTFDSTQLRGSI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + LVVE+YSR Sbjct: 177 NQ---RIDYNSINFKINELLVVEYYSR 200 >gi|156743922|ref|YP_001434051.1| 30S ribosomal protein S4 [Roseiflexus castenholzii DSM 13941] gi|189045395|sp|A7NR37|RS4_ROSCS RecName: Full=30S ribosomal protein S4 gi|156235250|gb|ABU60033.1| ribosomal protein S4 [Roseiflexus castenholzii DSM 13941] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 8/210 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMK 59 M++ KI RR+G + + + + R + PG HG R+ + S +GLQL KQK + Sbjct: 1 MARYIGPVGKISRRLGIGITEKGQRILAKRPFPPGQHGPSARRRQVSDYGLQLLEKQKAR 60 Query: 60 KYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 YG + E++FR IF++A R G+T L+ LE RLD +VYR F T ARQ V H Sbjct: 61 YIYG-VLERQFRRIFEKAQRFPGETGAYLLILLERRLDNVVYRLGFATTRAQARQLVTHG 119 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQ---LASVLEASQLAERDVPEYISVNHDNMV 176 H+ VNGR NI SY + G+ I V+ +S++ +++E+ LA+ P+++ +N ++ Sbjct: 120 HITVNGRKTNIPSYTVRVGETIAVRPESRRRMYFKNLVESGALAKHKAPDWLRLNPADLS 179 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 V +P P + L+VEFYSR Sbjct: 180 GEVVAMPRREDAEP---GINEQLIVEFYSR 206 >gi|42556482|gb|AAS19836.1| small ribosomal protein 4 [Plagiochila asplenioides] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTGKTLKSKSSYS---DRSTPNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE R D ++R PTI ARQ VNHRH+ +N VNI Sbjct: 57 KYMRIARKAKGSTGQVLLQLLEMRPDNTIFRLGMSPTIPGARQLVNHRHITINNDIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I + K K + V + ++ +P +++ + + + ++ + Sbjct: 117 SYNCEPGDIITIGNKQKSRSIVTKNINSFQKLKIPSHLTFDSTQLQGSVNQMINR---EW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|7576763|gb|AAF63978.1| small ribosomal protein 4 [Lyellia aspera] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLK----SGYSNQSVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + A ++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 56 LKYVRIARGAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A + + +++ +P +++ N +I L Sbjct: 116 PSYRCKPQDFITIKDRQKSQAIIAKNIDFSQKYKIPNHLTFNSLETKGLVNQI---LDRE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|254495736|ref|ZP_05108651.1| 30S ribosomal protein S4 [Legionella drancourtii LLAP12] gi|254355049|gb|EET13669.1| 30S ribosomal protein S4 [Legionella drancourtii LLAP12] Length = 206 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK----SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L + PG HG +K + + +G+QLR KQ Sbjct: 1 MARYLGPKCKLSRREGCDLLLKSGVRDHKSKCKSEKLPGQHG-DKKPRLNGYGIQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + EK+FR +K A R +G T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KIRRLYG-VLEKQFRGYYKMAARMKGSTGENLMTLLEKRLDNVVYRMGFASTRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVP-EYISVNHDNM 175 H+ +LVN + VN+ S+ GDV+ V+QK+K + A L+E+ P ++I+V+ + Sbjct: 119 THKAILVNDKVVNVPSFLVSPGDVVTVRQKAKSQGRIQAALALSEQRAPCDWITVDSSSF 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ NLVVE YS+ Sbjct: 179 KGTFSTAPTLTD---LSSDYNVNLVVELYSK 206 >gi|37683554|gb|AAQ98828.1| small ribosomal protein 4 [Pogonatum nudiusculum] Length = 190 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI S Sbjct: 57 YVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 YRCKPQDFITIKNRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|67035881|gb|AAY62867.1| small ribosomal protein subunit 4 [Clastobryum tenuirameum] Length = 200 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 10/206 (4%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKY 61 + + +I R+G K+P G Q K S + ++L KQK++ + Sbjct: 1 RYRGPRVRIICRLGTLPGLTNKTP----QLESGSINQSTSNKKISQYRIRLEEKQKLRFH 56 Query: 62 YGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHV 121 YG I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+ Sbjct: 57 YG-ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHI 115 Query: 122 LVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFV 180 LVN V+I SYRCK D I +K + K + + + ++ +P ++ + Sbjct: 116 LVNDCMVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLIYSSLEKKGLVN 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 QIVDR---ESIGLKINELLVVEYYSR 198 >gi|7576769|gb|AAF63981.1| small ribosomal protein 4 [Pogonatum contortum] Length = 191 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSGYI---NQTISNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 NYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQESQAIITKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRDS 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|28194743|gb|AAO33633.1|AF480988_1 ribosomal protein S4 [Pottia lanceolata] Length = 194 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + R K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGT-LPGLSNEIPHLRPSSXNQ--STSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G + L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSSGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + ++ K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|11466789|ref|NP_039385.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|50233973|ref|YP_052751.1| ribosomal protein S4 [Oryza nivara] gi|109156597|ref|YP_654216.1| ribosomal protein S4 [Oryza sativa Indica Group] gi|62287252|sp|Q6ENH2|RR4_ORYNI RecName: Full=30S ribosomal protein S4, chloroplastic gi|148840862|sp|P0C486|RR4_ORYSA RecName: Full=30S ribosomal protein S4, chloroplastic gi|148840865|sp|P0C487|RR4_ORYSI RecName: Full=30S ribosomal protein S4, chloroplastic gi|148840866|sp|P0C488|RR4_ORYSJ RecName: Full=30S ribosomal protein S4, chloroplastic gi|20146759|gb|AAM12495.1|AC074232_22 ribosomal protein S4 [Oryza sativa Japonica Group] gi|11986|emb|CAA33998.1| unnamed protein product [Oryza sativa Japonica Group] gi|42795489|gb|AAS46056.1| ribosomal protein S4 [Oryza sativa Indica Group] gi|42795556|gb|AAS46122.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|42795620|gb|AAS46185.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|49614997|dbj|BAD26780.1| ribosomal protein S4 [Oryza nivara] gi|290790575|gb|ADD62835.1| ribosomal protein S4 [Oryza sativa Japonica Group] gi|290790644|gb|ADD62903.1| ribosomal protein S4 [Oryza meridionalis] gi|226607|prf||1603356AD ribosomal protein S4 Length = 201 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K+P G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTRKTP----KSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I S+RCK D+I K + V + ++ +P++++++ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 KKI---LDRKWVGLKINELLVVEYYSR 199 >gi|313573570|emb|CAT03207.1| ribosomal protein S4 [Neckera himalayana] gi|313573572|emb|CAT03208.1| ribosomal protein S4 [Neckera polyclada] Length = 196 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + +I RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNDC 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I +K + K + + + ++ +P +++ + +I Sbjct: 117 IVDIPSYRCKPQDLITIKDQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKINELLVVEYYSR 194 >gi|197131484|gb|ACH47260.1| ribosomal protein S4 [Geranium macrorrhizum] Length = 199 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 11/207 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K R+G K P + P SK + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKICRLGALPGLTTKRPPDKSKSNP------PFSKKKEYQIRLKEKQKLRF 54 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ + A +++G T L+ LE RLD ++R TI ARQ +NHRH Sbjct: 55 HYG-LTERQLLKYVRIAGKAKGPTGPVLLQLLEMRLDNTLFRLGMASTIPQARQLINHRH 113 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D+I ++K K + +P +++++ Sbjct: 114 ILVNGRMVDIPSYRCKPRDIITAREKEKSRTLIQNYLDSPPHEKLPYHLTIDPLQYKGLV 173 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + ++ LVVE+YSR Sbjct: 174 NQIIARG---WVGLKIKELLVVEYYSR 197 >gi|29422363|gb|AAO84577.1| small ribosomal protein 4 [Bartramia mathewsii] Length = 199 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGALPGLTNKPPQLKSSSI---NQSXSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LV Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R V+I SYRC D I +K + K A + + ++ ++P +++ +I Sbjct: 117 NDRIVDIPSYRCXPHDFITIKDRPKSXAIISKNIDFYQKYEIPNHLTYGSSENKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLXINEXLVVEYYSR 197 >gi|157785980|gb|ABV74164.1| small ribosomal protein 4 [Dendrohypopterygium filiculiforme] Length = 196 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P + + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGALPGLTNKTPQLKSNLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNDY 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D I +K + K + + + + ++ +P +++ N +I Sbjct: 117 IVDIPSYRCKPQDFITIKNQRKSESIINKNIEFYQKYKIPNHLTYNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRESIGLKVNELLVVEYYSR 194 >gi|67035638|gb|AAY62750.1| small ribosomal protein subunit 4 [Hypodontium dregei] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKKPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE R D I++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGQVLLQLLEMRSDNIIFRLGMAPTIPGARQLVNHRHILVNNRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKDRQKYQAMIIKNLDFSQKTKVPNHLTFNSLEKNGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|67035618|gb|AAY62740.1| small ribosomal protein subunit 4 [Braunfelsia dicranoides] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 10/200 (5%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISE 67 +I RR+G K+P G Q K S + ++L KQK++ +YG I+E Sbjct: 1 VRIIRRLGTLPGLTNKTPQLK----SGSINQSASNKKVSQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 56 RQLLNHVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNDRV 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ +++ VP +++ + +I L Sbjct: 116 VNIPSYRCKPRDFITIKDRQKSQAIIIKNIDFSQKYKVPNHLTFSSLEKKGLVNQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 DQESIGLKINELLVVEYYSR 192 >gi|291277243|ref|YP_003517015.1| 30S ribosomal protein S4 [Helicobacter mustelae 12198] gi|290964437|emb|CBG40287.1| 30S ribosomal protein S4 [Helicobacter mustelae 12198] Length = 208 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRP------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ K++RR G +L + KS ++ R YGPG HGQ+R K S +GLQLR Sbjct: 1 MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYGPGQHGQKR-GKISEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK K YG +SEK+FR+IF EA+R G+T NL+ +E RLD +VYR F T ARQ Sbjct: 60 KQKAKVMYG-VSEKQFRAIFTEANRLDGNTGENLVRLIERRLDNVVYRMGFATTRRFARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHD 173 V+H H+LV+G+ VNI S+ K+G IEV +KSK + A +L ++ + ++ V+ D Sbjct: 119 LVSHGHILVDGKRVNIPSFFVKQGQKIEVIEKSKNNPQITRAIELTSQTGISPWVDVDKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 F R P + V + ++ L+VE YS+ Sbjct: 179 KRFGIFTRYPEREEVV---IPIEERLIVELYSK 208 >gi|49182797|gb|AAT57860.1| small ribosomal protein [Schistochila lehmanniana] Length = 195 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P SY K S + ++L KQK++ +YG ++E Sbjct: 1 RIKIIRRLGILPGLTSKTPKPKSSYI---DRSTANKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+L+N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMATTIPGARQLVNHRHILINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I +K K K + + L ++ +P +++ + + + + Sbjct: 117 VDIPSYNCELGDIIAIKNKQKSQSMITRNLNLLQKPKIPNHLTFDPTQLRGLVNQ---RV 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 HRESINLKINELLVVEYYSR 193 >gi|332181992|gb|AEE17680.1| ribosomal protein S4 [Treponema brennaborense DSM 12168] Length = 211 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 9/213 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ R + L + K P+N + PG + R K S +G+QLR Sbjct: 1 MARYTGPVCRLCRTEQKKLCLKGDRCKSDKCPINKKRGAPGKDPKARTGKKSEYGVQLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQKMK+ YG + EK+F F+ A R G T NLI LESRLD +V+R F + ARQ Sbjct: 61 KQKMKRIYGML-EKQFHLTFEHAQRMPGVTGDNLICLLESRLDNVVFRMHFASSRTQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHD 173 V H H+LVNG+SVNI SY + GDV+EVK+ SK+L +L+A ++++ V +I+++ D Sbjct: 120 LVLHGHILVNGKSVNIPSYEVRPGDVVEVKENSKKLTVILDALKEVSKSGVMPWINLDVD 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + P ++ + ++ LVVE YS+ Sbjct: 180 AQKGVYTAKPRRVEVIDL-ADIKEQLVVELYSK 211 >gi|3098188|gb|AAC15542.1| small ribosomal protein 4 [Plagiomnium affine] Length = 192 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V+I Sbjct: 57 LNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRLVDI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + + + ++ +P +++ N N +I L Sbjct: 117 PSYRCKPQDFITIKDRQTSQTMISKNIDFYQKSKIPNHLTYNSLNKKGLVNQI---LDRD 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIDLKINELLVVEYYSR 190 >gi|77019193|emb|CAH60202.1| chloroplast 30S ribosomal protein S4 [Grimmia ovalis] Length = 191 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSSLI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQKSQAMIIKNMDFSQKYKIPNHLTFNSLENKGLINQI---LDHES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|157363469|ref|YP_001470236.1| 30S ribosomal protein S4 [Thermotoga lettingae TMO] gi|172045985|sp|A8F4T8|RS4_THELT RecName: Full=30S ribosomal protein S4 gi|157314073|gb|ABV33172.1| RNA-binding S4 domain protein [Thermotoga lettingae TMO] Length = 209 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK------SPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ ++ RR G L+ + + + R Y PG HG++R K S +G QLRA Sbjct: 1 MARYTGPICRLCRREGMKLYLKGERCFTEHCAFDKRPYAPGDHGRQR-GKLSQYGTQLRA 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ M+ YG I E++F F++A GDT NL+ +ESR+D IVYR F + ARQ Sbjct: 60 KQVMRVIYG-IPERQFEHYFEKALGMSGDTRENLVRLVESRVDNIVYRLGFAISRRQARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H VNG ++I SY+ + GD++EV++KS+ LA++ A + ++ R ++ V+ D Sbjct: 119 LVTHGHFSVNGVKIDIPSYKLRPGDIVEVREKSRSLAAIKHAVESSKDRTQVPWVEVDFD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + TF+R+P+ + PV +Q +VEFYSR Sbjct: 179 SYRGTFLRLPNLEEVTDLPVDVQA--IVEFYSR 209 >gi|119713705|gb|ABL97755.1| ribosomal protein S4 [uncultured marine bacterium EB0_41B09] Length = 191 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 112/192 (58%), Positives = 145/192 (75%), Gaps = 1/192 (0%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +GEN+WGR P NTR+YGPG HG + + S +G+QLR KQK+K YYG+I EK+FR+IF Sbjct: 1 MGENIWGRENCPTNTRTYGPGQHGPKGVRRRSDYGVQLREKQKLKGYYGNIGEKQFRNIF 60 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 KEA S+GDTS NL+ LESRLD IVYR+ FVPT+FAARQF+NH+HV VNG VNI SY+ Sbjct: 61 KEAAASKGDTSENLLVLLESRLDAIVYRSNFVPTVFAARQFINHKHVKVNGSVVNIASYK 120 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 CK GD I+V +KS+ V+++ Q ERD+PEYI+++ AT++R PSS ++PYP + Sbjct: 121 CKPGDEIQVNEKSRSFPFVIDSVQKLERDLPEYINLDVKEFKATYIRYPSS-DEIPYPTM 179 Query: 195 MQPNLVVEFYSR 206 M P VVEFYSR Sbjct: 180 MSPGSVVEFYSR 191 >gi|290790782|gb|ADD63039.1| ribosomal protein S4 [Potamophila parviflora] Length = 201 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K+P + + H K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTRKTPKSRSNLKKKFH----SGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +LVNGR V+I S+RCK D+I K + V + ++ +P++++++ Sbjct: 116 ILVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 KKI---LDRKWVGLKINELLVVEYYSR 199 >gi|29027190|gb|AAN47157.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027192|gb|AAN47158.1| small ribosomal protein 4 [Hymenodontopsis mnioides] gi|29027194|gb|AAN47159.1| small ribosomal protein 4 [Hymenodontopsis mnioides] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIIGKNIDFYQKYKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|18920763|gb|AAL82426.1| ribosomal protein system 4 [Orthothecium rufescens] Length = 195 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKTKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|78369639|gb|ABB43049.1| ribosomal protein 4 [Calymperes dozyanum] Length = 199 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P S + K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGTLSGLTNKIPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A +++G T L+ FLE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKTKGSTGQILLQFLEMRLDNIIFRLGIAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SY+CK D I +K + K +++ + + + +P +++ N +I Sbjct: 117 NNRIVNIPSYQCKPQDFITIKDQQKYQTMIIKNTNFSPKYKIPSHLTFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|12330512|gb|AAG52793.1| ribosomal protein 4 [Pleuridium subulatum] Length = 189 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 8/194 (4%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 R+G K+P + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RLGTLPGLTNKTPQLK---TSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNY 56 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI SY Sbjct: 57 VRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRLVNIPSY 116 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 RCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 RCKPQDFITIKNRQKSQAMIIKNIDFSQKSKIPNHLTFNSLEKKGLVNQI---LDQESIG 173 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 LKINELLVVEYYSR 187 >gi|47606908|gb|AAT36374.1| ribosomal protein subunit 4 [Leptotheca gaudichaudii] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEILLQLLEMRLDNVIFRLGMTPTIPGARQLVNHRHILVNNHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + ++ +P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIINKNLDFYQKYKIPNHLTYNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|78369633|gb|ABB43046.1| ribosomal protein 4 [Calymperes motleyi] Length = 199 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K+P ++ K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKILRRLGTLSGLSNKTPPLK---ASSINQSISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYIRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N R VNI SY CK D I +K + K +++ + + P ++ N +I Sbjct: 117 NNRIVNIPSYHCKPQDFITIKDQQKYQTMIVKNTSFFPKYKTPNHLIFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|42556426|gb|AAS19808.1| small ribosomal protein 4 [Hygrolembidium acrocladum] Length = 191 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ Y K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKPKSGYN---DRSTPNKKVSQYRVRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A R++G T L+ LE RLD + R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARRAKGSTGQVLLQLLEMRLDNTILRFGMASTIPGARQLVNHRHIPINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY CK GD+I +K K K + + + L + +P +++ + + + + ++ Sbjct: 117 SYNCKPGDIITIKNKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGSINQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNIKINELLVVEYYSR 189 >gi|17025847|gb|AAL32089.1| ribosomal protein 4 [Mitthyridium sp. Wall 3652] Length = 199 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G K P + + K S + ++L KQK++ +YG Sbjct: 1 YRGLRVKIIRRLGILSGLTNKIPQLKSNSI---NQSTSNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 ++E++ + + A + +G T L+ LE RLD I++R PTI ARQ VNHRH+LV Sbjct: 58 -LTERQLLNYVRIARKVKGSTGQVLLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N VNI SY+CK D I +K + K +++ ++ + P +++ N +I Sbjct: 117 NNNIVNIPSYQCKPQDFITIKDQQKYQTMIVKNTKFFSKHKTPNHLTFNSVEKKGLVNQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDQESIGLKINELLVVEYYSR 197 >gi|11228658|gb|AAG33114.1| small ribosomal protein 4 [Oncophorus wahlenbergii] Length = 191 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K A +++ +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKIPNHLTFNSLEKKGLVNQI---LDQES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|63191753|gb|AAY34836.1| small ribosomal protein subunit 4 [Leiomitrium plicatum] Length = 196 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G K+P S + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNHR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I +K + K + + ++ +P ++ N +I Sbjct: 117 IVNIPSYRCKPLDFITIKDRQKSQNIINKNIDFYQKSKIPNHLIYNSLEKKGLVNQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDRELIGLKINELLVVEYYSR 194 >gi|18920759|gb|AAL82424.1| ribosomal protein system 4 [Orthothecium chryseum] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|67035580|gb|AAY62721.1| small ribosomal protein subunit 4 [Oncophorus wahlenbergii] Length = 194 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGLAPTIPGARQLVNHRHILVNDHIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 NIPSYRCKPQDFITIKNRQKSQAMIIKNVDFSQKAKVPNHLTFNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 QESIGLKINELLVVEYYSR 192 >gi|124268602|ref|YP_001022606.1| 30S ribosomal protein S4 [Methylibium petroleiphilum PM1] gi|152112230|sp|A2SLD2|RS4_METPP RecName: Full=30S ribosomal protein S4 gi|124261377|gb|ABM96371.1| SSU ribosomal protein S4P [Methylibium petroleiphilum PM1] Length = 207 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 125/214 (58%), Gaps = 15/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K K+ RR G +L+ + KS T+ PG HG+ S+ S FGLQLR Sbjct: 1 MARYLGPKAKLARREGTDLFLKSARRAIGDKSKFETK---PGQHGRTSGSRTSDFGLQLR 57 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+K+ YG + E++FR F EA+R +G+T NL+ LESRLD +VYR F T AR Sbjct: 58 EKQKVKRMYG-VLERQFRRYFAEAERRKGNTGANLLLLLESRLDNVVYRMGFGSTRAEAR 116 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNH 172 Q V+H+ + VNG VNI SY K GDV+ V++K+K+ V E+ +LAE +P ++ V+ Sbjct: 117 QLVSHKGITVNGEVVNIASYLVKTGDVVAVREKAKKQLRVTESLKLAESMGLPAWVQVDA 176 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F + P + + + +L+VE YSR Sbjct: 177 TKLEGVFKKSPDRDE---FGSDINESLIVELYSR 207 >gi|328541054|gb|AEB21751.1| ribosomal protein S4 [Lembidium longifolium] Length = 195 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K Y K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKILKPKSGYN---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T + LE R D ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVSLQLLEMRPDNTIFRLGMASTIPGARQLVNHRHIPINNNI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C+ GD+I +++K K + + + L + +P +++ + + + + ++ Sbjct: 117 VDIPSYNCEPGDIITIREKQKSQSVITKNINLFQNLKIPSHLTFDSIKLCGSINQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NRESIDLKINELLVVEYYSR 193 >gi|28194799|gb|AAO33661.1|AF481016_1 ribosomal protein S4 [Tortula muralis] Length = 196 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI R +G K P + K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRPLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + + K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|3098260|gb|AAC15578.1| small ribosomal protein 4 [Plagiopus oederi] Length = 197 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I R+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GLRVRIISRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K + K A + + ++ +P +++ N +I Sbjct: 117 RMVDIPSYRCKPQDFITIKDRQKSQAIISKNIDFYQKYKIPNHLTYNSLENKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRESIGLKINELLVVEYYSR 195 >gi|290790713|gb|ADD62971.1| ribosomal protein S4 [Oryza australiensis] Length = 201 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K+P G L + K + ++L+ KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTRKTP----KSGSNLKKKFHSGKKEQYRIRLQEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++E++ A +++ T L+ LE RLD I++R TI ARQ VNHRH Sbjct: 57 HYG-LTERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 + VNGR V+I S+RCK D+I K + V + ++ +P++++++ Sbjct: 116 IFVNGRIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 176 KKI---LDRKWVGLKINELLVVEYYSR 199 >gi|37960611|gb|AAP70675.1| small ribosomal protein 4 [Sphagnum strictum] Length = 191 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P + SY + K S + ++L KQK++ +YG I+E++ Sbjct: 2 RRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLK 57 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI S Sbjct: 58 YVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPS 117 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A + + P +++++ + +I Sbjct: 118 YRCKPQDFITIKDRQKSQAIITRSMDYFRGYKTPNHLTLDSSQKKGSVNQIIDR---ESI 174 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 GLKINELLVVEYYSR 189 >gi|256380568|ref|YP_003104228.1| 30S ribosomal protein S4 [Actinosynnema mirum DSM 43827] gi|255924871|gb|ACU40382.1| ribosomal protein S4 [Actinosynnema mirum DSM 43827] Length = 201 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ +I RR+ +L G + R Y PG HG+ R K S + LQL+ KQK + Sbjct: 1 MARYTGPATRISRRLKVDLIGGDQ-AFERRPYPPGQHGRGR-IKESEYLLQLQEKQKARY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG I EK+F +KEA R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-ILEKQFVRYYKEAVRRTGKTGENLLQILESRLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEA-SQLAERDVPEYISVNHDNMVATF 179 LVNG VNI SY+ + D+I+VK KS L A + +R VP ++ V N+ Sbjct: 118 FLVNGHKVNIPSYQVSKFDIIDVKPKSLPLLPFEAARASFGDRPVPAWLQVVPSNLRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + + PV L+VE YS+ Sbjct: 178 HQLPERAQ-IDTPVT--EQLIVELYSK 201 >gi|121761886|gb|ABM65028.1| ribosomal protein S4 [Orthomnion dilatatum] Length = 195 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPHLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ ++P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQIIISKNIDFYQKYEIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRNSIDLKINELLVVEYYSR 193 >gi|293634127|gb|ADE60443.1| ribosomal protein subunit 4 [Polytrichum strictum] Length = 191 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 57 NYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|46811038|gb|AAT01837.1| small ribosomal protein 4 [Petalophyllum ralfsii] Length = 197 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + K+ RR+G + SY + K S + ++L KQK++ +YG + Sbjct: 1 GPRAKVIRRLGALPGLTDGILASKFSYI---NRSASSKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A ++G T L+ LE RLD I++R PTI ARQ VNH H+ ++G Sbjct: 57 TERQLLRYVRIAREAKGSTGRVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHGHIAIDG 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 +V+I SY K GDVI +K + + + + +++ +P +++++ + ++ Sbjct: 117 NTVDIPSYNRKPGDVITIKNRRESQSIITRNMSSSQKPKIPNHLTLDSAQFRGSVDQVID 176 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 RD---WMNLKINELLVVEYYSR 195 >gi|37548877|gb|AAO32707.1| ribosomal protein 4 [Polytrichastrum formosum] Length = 192 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 2 IRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 57 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 58 NYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNIP 117 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 118 SYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRES 174 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 IGLKINELLVVEYYSR 190 >gi|47606892|gb|AAT36366.1| ribosomal protein subunit 4 [Cyathophorum bulbosum] Length = 194 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVNG V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMFPTIPGARQLVNHRHILVNGSIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY+CK D I +K + K A + + + ++ +P +++ N+ +I L Sbjct: 117 DIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKYKIPNHLTYNYLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|108798084|ref|YP_638281.1| 30S ribosomal protein S4 [Mycobacterium sp. MCS] gi|119867180|ref|YP_937132.1| 30S ribosomal protein S4 [Mycobacterium sp. KMS] gi|126433744|ref|YP_001069435.1| 30S ribosomal protein S4 [Mycobacterium sp. JLS] gi|123070558|sp|Q1BD09|RS4_MYCSS RecName: Full=30S ribosomal protein S4 gi|152112233|sp|A3PVL7|RS4_MYCSJ RecName: Full=30S ribosomal protein S4 gi|152112234|sp|A1UBY4|RS4_MYCSK RecName: Full=30S ribosomal protein S4 gi|108768503|gb|ABG07225.1| SSU ribosomal protein S4P [Mycobacterium sp. MCS] gi|119693269|gb|ABL90342.1| SSU ribosomal protein S4P [Mycobacterium sp. KMS] gi|126233544|gb|ABN96944.1| SSU ribosomal protein S4P [Mycobacterium sp. JLS] Length = 201 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 112/207 (54%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+G +L G +S R Y PG HG+ R K S + QL+ KQK + Sbjct: 1 MARYTGPATRKSRRLGVDLVGGDQS-FEKRPYPPGQHGRAR-IKESEYRTQLQEKQKARF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+R G T NL+ LESRLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLEKQFRRYYDEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 VNG V+I SYR + D+I+V++KS + A + A +R +P ++ V + Sbjct: 118 FTVNGVKVDIPSYRVSQYDIIDVREKSLNTDPFVIARETAGDRPIPSWLQVVGERQRILV 177 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V + L+VE YS+ Sbjct: 178 HQLPERAQ---IDVPLTEQLIVELYSK 201 >gi|18920773|gb|AAL82431.1| ribosomal protein system 4 [Plagiothecium neckeroideum] Length = 196 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 3 CEIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 58 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 59 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 118 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 119 DIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI---LN 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 RESIGLKINELLVVEYYSR 194 >gi|67035624|gb|AAY62743.1| small ribosomal protein subunit 4 [Mesotus celatus] Length = 194 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 10/200 (5%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISE 67 +I RR+G K+P G Q K S + ++L KQK++ +YG I+E Sbjct: 1 VRIIRRLGTLPGLTNKTPQLK----SGSINQSISNKKVSQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A ++G T L+ LE R D +++R PTI ARQ VNHRH+LVN R Sbjct: 56 RQLLNYVRIAREAKGSTGQVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A +++ +++ VP +++ + +I L Sbjct: 116 VNIPSYRCKPQDFITIKDRQKSQAMIIKNIDFSQKSKVPNHLTFSSLEKKGLVNQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 DQESIGLKINELLVVEYYSR 192 >gi|167626783|ref|YP_001677283.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667363|ref|ZP_04754941.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875913|ref|ZP_05248623.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189045381|sp|B0U0W6|RS4_FRAP2 RecName: Full=30S ribosomal protein S4 gi|158523431|gb|ABW70829.1| 30s ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167596784|gb|ABZ86782.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254841934|gb|EET20348.1| 30S ribosomal protein S4 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 206 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN----TRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG R+++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E +F+ + EA+R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-VLEGQFKKYYVEANRRKGNTGATLLEILESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 H+ +++NG + N+ S + K GDV+ V++KSK+ + A +LA R +I VN D++ Sbjct: 119 VHKGIMLNGHTCNVPSAQVKAGDVVAVREKSKKQLRIQNAIELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P + + L++E YS+ Sbjct: 179 EGTMKSSPDRSE---LSADINEQLIIELYSK 206 >gi|11228623|gb|AAG33097.1| small ribosomal protein 4 [Campylopus atrovirens] Length = 191 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTFQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRHVLVN VNI Sbjct: 57 NYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHVLVNNYIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + K + + + + +++ VP +++ N +I L Sbjct: 117 SYRCKPQDFITIKNRQKSQSIIAKNLEFSQKYKVPNHLTFNSLEKKGLVNQI---LNHES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLNINELLVVEYYSR 189 >gi|293634049|gb|ADE60404.1| ribosomal protein subunit 4 [Pogonatum perichaetiale] Length = 190 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQLLN 56 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI S Sbjct: 57 YVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDRIVNIPS 116 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + + A + + +++ +P +++ N +I L Sbjct: 117 YRCKPQDFITIKDRQESQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRESI 173 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 GLKINELLVVEYYSR 188 >gi|18920779|gb|AAL82434.1| ribosomal protein system 4 [Platydictya jungermannioides] Length = 194 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKNQKKSEAIISKNIEFYQKNKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|305679764|ref|ZP_07402574.1| ribosomal protein S4 [Corynebacterium matruchotii ATCC 14266] gi|305660384|gb|EFM49881.1| ribosomal protein S4 [Corynebacterium matruchotii ATCC 14266] Length = 203 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 M++ + RR+ +L G K + R Y PG G+ R K S + LQL+ KQK K Sbjct: 1 MARYTGPVTRKSRRLRVDLVGGSK-AYDKRPYPPGQAGRNR-IKESEYLLQLQEKQKAKY 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG + EK+FR + EA+R G T NL+ LE+RLD +VYRA T ARQ V+H H Sbjct: 59 TYG-VLEKQFRRYYAEANRMPGKTGENLVILLEARLDNVVYRAGLARTRRQARQLVSHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL---AERDVPEYISVNHDNMVA 177 LVNG+ VN+ SYR + D+I+V+ KS + EA++ A++ +P ++ V + Sbjct: 118 FLVNGKKVNVPSYRVSQYDIIDVRDKSHTMLWFEEATENLVDADKVIPAWLQVVPSTLRI 177 Query: 178 TFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 ++P + V +Q L+VE YS+ Sbjct: 178 LVHQLPERAQ---IDVPLQEQLIVELYSK 203 >gi|42556408|gb|AAS19799.1| small ribosomal protein 4 [Chandonanthus sp. He-Nygren 492] Length = 191 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN +V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDTVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 SYSCESGDIITIRNKQKSQSIITKNINLFQKSKIPSHLTFDLTQLRGSVNQ---TVNREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 VNLKINELLVVEYYSR 189 >gi|33413219|emb|CAD86745.1| ribosomal protein small subunit 4 [Dichodontium pellucidum] Length = 187 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 8/192 (4%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G K+P S + K S + ++L KQK++ +YG I+E++ + + Sbjct: 1 GTLPGLTSKTPQLKSSSI---NQPTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNYVR 56 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN VNI SYRC Sbjct: 57 IARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHIVNIPSYRC 116 Query: 136 KEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K D I +K + K A +++ +++ VP++++ N +I L + Sbjct: 117 KPQDFITIKNQQKSQAMIMKNLDFSQKYKVPDHLTFNSLEKKGLVNQI---LDQESIGLK 173 Query: 195 MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 174 INELLVVEYYSR 185 >gi|63101057|gb|AAY33153.1| small ribosomal protein 4 [Symphysodon longicuspis] Length = 194 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY+CK D I +K + K + + + ++ +P +++ ++ +I L Sbjct: 117 DIPSYQCKPQDFITIKNQRKSETMISKNIEFYQKYKIPNHLTYSYLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|56707502|ref|YP_169398.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89255694|ref|YP_513055.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica LVS] gi|110669973|ref|YP_666530.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC198] gi|118496876|ref|YP_897926.1| 30S ribosomal protein S4 [Francisella tularensis subsp. novicida U112] gi|156501642|ref|YP_001427707.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010989|ref|ZP_02275920.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica FSC200] gi|194324098|ref|ZP_03057872.1| ribosomal protein S4 [Francisella tularensis subsp. novicida FTE] gi|208780324|ref|ZP_03247665.1| ribosomal protein S4 [Francisella novicida FTG] gi|224456565|ref|ZP_03665038.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis MA00-2987] gi|254367075|ref|ZP_04983110.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica 257] gi|254368645|ref|ZP_04984660.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica FSC022] gi|254370809|ref|ZP_04986814.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC033] gi|254372233|ref|ZP_04987724.1| 30S ribosomal protein S4 [Francisella tularensis subsp. novicida GA99-3549] gi|254373715|ref|ZP_04989198.1| 30S ribosomal protein S4 [Francisella novicida GA99-3548] gi|254874322|ref|ZP_05247032.1| 30S ribosomal protein S4 rpsD [Francisella tularensis subsp. tularensis MA00-2987] gi|290953189|ref|ZP_06557810.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica URFT1] gi|295313557|ref|ZP_06804146.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica URFT1] gi|61215374|sp|Q5NHU4|RS4_FRATT RecName: Full=30S ribosomal protein S4 gi|122501251|sp|Q2A5E6|RS4_FRATH RecName: Full=30S ribosomal protein S4 gi|123359595|sp|Q14J96|RS4_FRAT1 RecName: Full=30S ribosomal protein S4 gi|152060948|sp|A0Q4K7|RS4_FRATN RecName: Full=30S ribosomal protein S4 gi|171769925|sp|A7N9U8|RS4_FRATF RecName: Full=30S ribosomal protein S4 gi|54113157|gb|AAV29212.1| NT02FT0049 [synthetic construct] gi|56603994|emb|CAG44982.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis SCHU S4] gi|89143525|emb|CAJ78701.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica LVS] gi|110320306|emb|CAL08365.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC198] gi|118422782|gb|ABK89172.1| 30S ribosomal protein S4 [Francisella novicida U112] gi|134252900|gb|EBA51994.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica 257] gi|151569052|gb|EDN34706.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis FSC033] gi|151569962|gb|EDN35616.1| 30S ribosomal protein S4 [Francisella novicida GA99-3549] gi|151571436|gb|EDN37090.1| 30S ribosomal protein S4 [Francisella novicida GA99-3548] gi|156252245|gb|ABU60751.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121553|gb|EDO65738.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica FSC022] gi|194321545|gb|EDX19029.1| ribosomal protein S4 [Francisella tularensis subsp. novicida FTE] gi|208743692|gb|EDZ89995.1| ribosomal protein S4 [Francisella novicida FTG] gi|254840321|gb|EET18757.1| 30S ribosomal protein S4 rpsD [Francisella tularensis subsp. tularensis MA00-2987] gi|282158646|gb|ADA78037.1| 30S ribosomal protein S4 [Francisella tularensis subsp. tularensis NE061598] gi|328675431|gb|AEB28106.1| SSU ribosomal protein S4p (S9e) [Francisella cf. novicida 3523] gi|328676345|gb|AEB27215.1| SSU ribosomal protein S4p (S9e) [Francisella cf. novicida Fx1] Length = 206 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN----TRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG R+++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKAGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P + + L++E YS+ Sbjct: 179 EGTMKSSPDRSE---LSADINEQLIIELYSK 206 >gi|37960603|gb|AAP70671.1| small ribosomal protein 4 [Sphagnum recurvum] Length = 192 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P + SY + K S + ++L KQK++ +YG I+E++ Sbjct: 3 RRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLK 58 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI S Sbjct: 59 YVRIARRTKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPS 118 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A + + + P +++++ + +I Sbjct: 119 YRCKPQDFITIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR---ESI 175 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 GLKINELLVVEYYSR 190 >gi|63101073|gb|AAY33161.1| small ribosomal protein 4 [Phyllodon truncatulus] Length = 198 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 5 ESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGD 64 + +I RR+G K+P S + K S + ++L KQK++ +YG Sbjct: 1 RGPRVRIIRRLGTLPGLTNKTPQLKSSS---NNQSTSNKKISQYRIRLEEKQKLRFHYG- 56 Query: 65 ISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVN 124 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVN 116 Query: 125 GRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIP 183 V+I SYRCK D I +K + K + + + ++ +P +++ N A I Sbjct: 117 DCIVDIPSYRCKPQDFITIKNRRKSETIISKNIEFYQKSKIPNHLTYNFLEKKALVNEI- 175 Query: 184 SSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 176 --LDRESIGLKINELLVVEYYSR 196 >gi|12330488|gb|AAG52781.1| ribosomal protein 4 [Oedipodium griffithianum] Length = 189 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 10/195 (5%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQR-RKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R+G K+ PG Q K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RLGALPGLTNKTSQLK----PGYINQSVSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLN 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A ++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI S Sbjct: 56 YVRIARGAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A + + +++ +P +++ N +I L Sbjct: 116 YRCKPQDFITIKDRQKSQAIIAKNMDFSQKYKIPNHLTFNSLQKKGLVNQI---LDRESI 172 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 GLKINELLVVEYYSR 187 >gi|67035748|gb|AAY62805.1| small ribosomal protein subunit 4 [Pentastichella pentasticha] Length = 193 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 8/198 (4%) Query: 10 KIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKK 69 KI RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 KIIRRLGVLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQ 56 Query: 70 FRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVN 129 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V+ Sbjct: 57 LLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNHRIVD 116 Query: 130 IGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKD 188 I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 117 IPSYRCKPQDFITIKNRQKSQDIITKNIDFYQKYKIPNHLTYNSLEKNGFVNQI---LDR 173 Query: 189 VPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 ELIGLKINELLVVEYYSR 191 >gi|63100993|gb|AAY33121.1| small ribosomal protein 4 [Spiridentopsis longissima] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNHCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKNQRKSETIINKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|37992609|gb|AAR06483.1| small ribosomal protein 4 [Orthostichella pentasticha] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVNG V Sbjct: 58 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNGCIV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 118 DIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---LD 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 RESIGLKINELLVVEYYSR 193 >gi|37039871|gb|AAQ88209.1| small ribosomal protein 4 [Andreaea rothii] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P Y ++ K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRIIRRLGALPGLTNKTPQLKSGY---MNPFISNKKMSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R TI ARQ VNHRH+LVN R V Sbjct: 58 QLLKYVRIARRAKGSTGQILLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + +++ +P ++ N +I Sbjct: 118 NIPSYRCKPQDFITIKDRQKSQAIITKNIDCSQKYKIPNHLIFNSLQKKGLINQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|49182756|gb|AAT57840.1| small ribosomal protein [Marsupidium latifolium] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K Y K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKVLKPKSGYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE R D ++R TI ARQ VNHRH+ +N Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRSDNTIFRLGMASTIPGARQLVNHRHISINNDI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY C GD+I VK + K + +++ L ++ +P +++ + + + ++ Sbjct: 117 VDIPSYNCGPGDIITVKNERKSQSMIIKNINLFQKSKMPSHLTFDSTELRGFVNQ---TI 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWIDLKINELLVVEYYSR 193 >gi|37960591|gb|AAP70665.1| small ribosomal protein 4 [Sphagnum lapazense] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + Y + K S + ++L KQK++ +YG I+E+ Sbjct: 2 VRILRRLGVLPGLTNKTPQSKSGYI---NQSISNKKVSQYRIRLEEKQKLRFHYG-ITER 57 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +V Sbjct: 58 QLLKYVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTV 117 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + ++ P +++++ +I Sbjct: 118 NIPSYRCKPRDFITIKDRPKSQAIITRSMDYSQSHKTPNHLNLDSSQKKGLVNQIIDR-- 175 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 -ESIGLKINELLVVEYYSR 193 >gi|121761754|gb|ABM64964.1| ribosomal protein S4 [Plagiomnium elatum] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGPTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ E RLD I++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLPEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRL 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDRQKSQTMISKNIDFYQKYKIPNHLTYNSLNKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NRDSIDLKINELLVVEYYSR 193 >gi|49182702|gb|AAT57813.1| small ribosomal protein [Dumortiera hirsuta] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+ + Y + K S + ++L KQK++ +YG ++E+ Sbjct: 1 VKIIRRLGALPGLTNKTLKSKSGYI---NQSTSNKKVSQYRIRLEEKQKLRFHYG-LTER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD I++R TI ARQ VNHRH+L+N +V Sbjct: 57 QLLKYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMTSTIPGARQLVNHRHILINNNTV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY CK DVI +K +SK + + + ++ +P +++ + + +I Sbjct: 117 DIPSYNCKPKDVITIKDRSKSQSIITKNLNSFQKQKIPNHLAFDLMQIKGIVNQIIDR-- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 -EWISLKINELLVVEYYSR 192 >gi|63191730|gb|AAY34825.1| small ribosomal protein subunit 4 [Leiomela bartramioides] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + ++ ++P +++ N +I L Sbjct: 117 DIPSYRCKSHDFITIKDRQKSQTIISKNIDFYQKYEIPNHLTYNSSENKGLINQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|26421825|gb|AAN78171.1| ribosomal protein S4 [Tortula marginata] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K P ++ K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGTLPGLSNKIPHLK---PSSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I + + K + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|20531092|gb|AAM27367.1| ribosomal protein 4 [Muscoflorschuetzia pilmaiquen] Length = 191 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 8/194 (4%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSI 73 R+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 3 RLGALPGLTSKTPQLKSSSI---NQSASNKKISQYRIRLEEKQKLRFHYG-ITERQLLKY 58 Query: 74 FKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSY 133 + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R VNI SY Sbjct: 59 VRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIVNIPSY 118 Query: 134 RCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYP 192 RC+ D I +K + K +++ +++ +P +++ + +I L Sbjct: 119 RCQPQDFITIKDRQKSQGIIVKNMDFSQKYKIPNHLTFDSLEKKGVVNQI---LDRESIG 175 Query: 193 VIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 LKINELLVVEYYSR 189 >gi|67036088|gb|AAY62970.1| small ribosomal protein subunit 4 [Tripterocladium leucocladulum] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + + ++ +P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|15617094|ref|NP_240307.1| 30S ribosomal protein S4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681846|ref|YP_002468232.1| 30S ribosomal protein S4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682401|ref|YP_002468785.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471551|ref|ZP_05635550.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387058|sp|P57567|RS4_BUCAI RecName: Full=30S ribosomal protein S4 gi|254764574|sp|B8D9S3|RS4_BUCA5 RecName: Full=30S ribosomal protein S4 gi|254764575|sp|B8D825|RS4_BUCAT RecName: Full=30S ribosomal protein S4 gi|25294492|pir||A84988 30S ribosomal protein S4 [imported] - Buchnera sp. (strain APS) gi|10039159|dbj|BAB13193.1| 30S ribosomal protein S4 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622134|gb|ACL30290.1| 30S ribosomal protein S4 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624689|gb|ACL30844.1| 30S ribosomal protein S4 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086222|gb|ADP66304.1| 30S ribosomal protein S4 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086799|gb|ADP66880.1| 30S ribosomal protein S4 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087386|gb|ADP67466.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087883|gb|ADP67962.1| 30S ribosomal protein S4 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 206 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M+K K K+ RR G +L+ + K + PG HG RK + S + +QLR Sbjct: 1 MAKYLGPKLKLSRREGTDLFLKSGLRSIESKCKLEQ---PPGQHG-IRKPRLSDYAIQLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQK+++ YG + E++F+ +K A +G+T NL+ LESRLD +VYR F T +R Sbjct: 57 EKQKVRRLYG-VLERQFKIYYKLAASLKGNTGANLLQLLESRLDNVVYRMGFGCTRSESR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNH 172 Q +NH+ ++VN + VNI SY+ D I ++ KSK + + A +L +R+ P ++ VN Sbjct: 116 QLINHKSIMVNNKVVNIASYQVSPNDQISIRNKSKNQSRIKAALELVEQREKPIWLEVNS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F R P + L+VE YS+ Sbjct: 176 TKMEGIFKRFPER---SDLSAEINEYLIVELYSK 206 >gi|157689450|gb|ABV65281.1| ribosomal protein S4 [Connarus conchocarpus] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 9/201 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 K RR+G K P+ G Q R K S + ++L KQK++ +YG ++ Sbjct: 1 PHFKKIRRLGALPGLTSKRPIA----GNDFRNQSRSGKKSQYRIRLEEKQKLRFHYG-LT 55 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + A +++G T L+ LE RLD I++R TI ARQ V HRH+LVNGR Sbjct: 56 ERQLLKYVRIAGKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVYHRHILVNGR 115 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSS 185 V+I SYRCK D+I + + K A + A ++P+++++ +I S Sbjct: 116 RVDIPSYRCKPRDIITARDEQKSRALIQNYLDSSAHEELPKHLTLYPLQYKGLVNQIIDS 175 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 K---WVGLKINELLVVEYYSR 193 >gi|37960593|gb|AAP70666.1| small ribosomal protein 4 [Sphagnum lescurii] Length = 191 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P + +Y + K S + ++L KQK++ +YG I+E++ Sbjct: 2 RRLGVLPGLTSKTPQSKSNYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLK 57 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI S Sbjct: 58 YVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPS 117 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A + + + P +++++ + +I Sbjct: 118 YRCKPQDFISIKDRQKSQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR---ESI 174 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 GLKINELLVVEYYSR 189 >gi|63101069|gb|AAY33159.1| small ribosomal protein 4 [Muellerobryum whiteleggei] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P +S K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTP-QLKSSPINQ--STSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY+CK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYQCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|63101085|gb|AAY33167.1| small ribosomal protein 4 [Stenodesmus tenuicuspis] Length = 199 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 4 RESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 + KI RR+G L G + +S K S + ++L KQK++ +YG Sbjct: 1 YRGPRVKIIRRLGV-LPGLTNKILELKSSSITQ--SISNKKISQYRIRLEEKQKLRFHYG 57 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 I+E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRHV+V Sbjct: 58 -ITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHVVV 116 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRI 182 N V+I SYRCK D I +K + K + + + ++ +P Y++ N +I Sbjct: 117 NDSIVDIPSYRCKPQDFITIKNQKKYEVIISKNIEFYQKSKIPNYLTYNFVEKKGLINQI 176 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 177 ---LDRESIGLKINELLVVEYYSR 197 >gi|270300653|gb|ACZ69405.1| ribosomal protein S4 [Radula grandis] Length = 202 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 8/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + KI RR+G K+ SY K S + ++L KQK++ Sbjct: 1 MSRYRGPRVKIIRRLGYLPGLSNKTLKPKSSYI---DRSISNKKISQYRIRLEEKQKLRF 57 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG ++EK+ + A +G T LI LE RLD ++ PTI ARQ VNH+H Sbjct: 58 HYG-LTEKQLLKYVRIARNMKGSTGQVLIQLLEMRLDNTIFCLGMTPTIPGARQLVNHKH 116 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATF 179 +++N +VNI SY C+ GD+I ++ + K + ++ ++P +++ + + Sbjct: 117 IVINNHTVNIPSYNCELGDIITIRNRHKSKLIITRNINSVQKLEIPNHLTFDATQLRGLI 176 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + + + + LVVE+YSR Sbjct: 177 NQ---RIDCNSISLKINELLVVEYYSR 200 >gi|18920771|gb|AAL82430.1| ribosomal protein system 4 [Plagiothecium latebricola] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|18920733|gb|AAL82411.1| ribosomal protein system 4 [Catagonium nitens] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K A + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNQRKSEAIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|42556510|gb|AAS19850.1| small ribosomal protein 4 [Trichocolea tomentella] Length = 191 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ + SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTSKTLKSKYSYI---DRSTSNKKISQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE R D ++R PTI ARQ V HRH+ +N V+I Sbjct: 57 KYMRIARKTKGSTGQVLLQLLEMRPDNTIFRLGMAPTIPGARQLVTHRHISINNEIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD I ++ K K + + + L ++ +P +++ N + + + ++ Sbjct: 117 SYNCEPGDTITIRNKQKSQSVITKNINLFQKLKIPSHLTFNSTQLRGSVNQ---TINREW 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|67035676|gb|AAY62769.1| small ribosomal protein subunit 4 [Campylopodiella stenocarpa] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+ + K S + ++L KQK++ +YG I+E++ Sbjct: 3 IIRRLGTLPGLTNKTSQLKSNSI---TQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 58 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN VNI Sbjct: 59 LNYVRIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNNYIVNI 118 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K V + +++ VP +++ N +I L Sbjct: 119 PSYRCKPQDFITIKNRQKSQFIVAKNIDFSQKYKVPNHLTFNSLEKKGLVNQI---LNKE 175 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 SIGLKINELLVVEYYSR 192 >gi|24473842|gb|AAL82765.1| small ribosomal subunit protein 4 [Plagiobryum demissum] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P + + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I +K + K A + + L + P +++ N +I L Sbjct: 117 VNIPSYRCKPEDFITIKDRQKSQAIISKNLNLYQEYKTPNHLTYNFLKKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|66866205|gb|AAY57776.1| small ribosomal protein 4 [Aulacomnium heterostichum] Length = 207 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 13/210 (6%) Query: 3 KRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYY 62 + + +I RR+G K+P + S K S + ++L QK++ +Y Sbjct: 3 RYRGPRVRIIRRLGALPGLTNKTPQSKSSSI---DQSTSNKKISQYRIRLEENQKLRFHY 59 Query: 63 GDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVL 122 G I+E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+L Sbjct: 60 G-ITERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHIL 118 Query: 123 VNGRSVNIGSYRCKEGDVIEVKQKSKQLASV-----LEASQLAER-DVPEYISVNHDNMV 176 VN R V+I SYRCK D I +K + + A + + ++ +P +++ + Sbjct: 119 VNDRIVDIPSYRCKPQDFITIKDRQESEAIIXXXXXXKNIYFYQKYKIPNHLTYSSLEKK 178 Query: 177 ATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I L + + LVVE+YSR Sbjct: 179 GLVNQI---LDRESIGLKINELLVVEYYSR 205 >gi|225016258|ref|ZP_03705450.1| hypothetical protein CLOSTMETH_00161 [Clostridium methylpentosum DSM 5476] gi|224950933|gb|EEG32142.1| hypothetical protein CLOSTMETH_00161 [Clostridium methylpentosum DSM 5476] Length = 208 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 85/213 (39%), Positives = 118/213 (55%), Gaps = 12/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M++ + ++ RR G+ L+ + K V+ RSY PG HGQ RK K S +GLQLR Sbjct: 1 MARYTGAVCRLCRREGKKLFLKGERCFSDKCSVSLRSYAPGQHGQSRK-KVSEYGLQLRE 59 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQ K+YY ++SE +F F+ A+R G T NL+ LESRLD IVYRA F + ARQ Sbjct: 60 KQMAKRYY-NVSENQFYKYFEMAERKPGMTGENLLKILESRLDNIVYRAGFASSRAEARQ 118 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H +NG+ VNI S K GDVIEV + S+ + + R VP ++ VN D Sbjct: 119 LVLHNHFRLNGKKVNICSLLVKPGDVIEVTEASRSNDKMKAVVETWSARPVPMWMDVNKD 178 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M R P+ + + + +L+VE YS+ Sbjct: 179 GMTVKMDRYPNRDE---IDLEVAEHLIVELYSK 208 >gi|59803313|gb|AAX07765.1| Rps4 [Pellia endiviifolia] Length = 197 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 KI RR+G K+ SY + K S + ++L KQK++ +YG ++E+ Sbjct: 4 CKIIRRLGALPGLTSKTLKLESSYI---NQSTPNKKISQYRIRLEEKQKLRFHYG-LTER 59 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + A +++G T L+ LE RLD ++R PTI ARQ VNH H+++N +V Sbjct: 60 QLLKYVRIARKTKGSTGEVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHGHIVINDYTV 119 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY C+ DVI +K ++K + + + + +P +++ + + + ++ Sbjct: 120 DIPSYNCEPRDVITIKNRNKSQSLITKNMDSFRKQKIPNHLTFDFTKFRGSVNK---TID 176 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 177 RECIDLKINELLVVEYYSR 195 >gi|111283698|gb|ABH09199.1| small ribosomal protein 4 [Tylimanthus saccatus] Length = 191 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 8/198 (4%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + KI RR+G K+ Y K S + ++L KQK++ +YG + Sbjct: 1 GPRVKIIRRLGALPGLTSKALKPKSGYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-L 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N Sbjct: 57 TEQQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SY C GD+I VK + K + +++ L ++ +P +++ + + + Sbjct: 117 DIVDIPSYNCGPGDIITVKNERKSQSMIIKNINLFQKSKIPSHLTFDSTELRGFVNQ--- 173 Query: 185 SLKDVPYPVIMQPNLVVE 202 ++ + + LVVE Sbjct: 174 TINREWIDLKINELLVVE 191 >gi|33413225|emb|CAD86748.1| ribosomal protein small subunit 4 [Oncophorus wahlenbergii] Length = 188 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +G K+P S + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 LGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNYV 56 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI SYR Sbjct: 57 RIARKAKGSTGQVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNIPSYR 116 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPV 193 CK D I +K + K A +++ +++ +P +++ N +I L + Sbjct: 117 CKPQDFITIKNRQKSQAMIIKNVDFSQKTKIPNHLTFNSLEKKGLVNQI---LDQESIGL 173 Query: 194 IMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 174 KINELLVVEYYSR 186 >gi|7576773|gb|AAF63983.1| small ribosomal protein 4 [Polytrichadelphus magellanicus] Length = 192 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQSVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 LNYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D + +K + + A + +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFVTIKNRQESQAIITRNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LNRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|259501666|ref|ZP_05744568.1| 30S ribosomal protein S4 [Lactobacillus iners DSM 13335] gi|259166951|gb|EEW51446.1| 30S ribosomal protein S4 [Lactobacillus iners DSM 13335] Length = 208 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ K RR+G +L G K ++ R+Y PG HG ++K S +G QL+ KQK++ Sbjct: 6 MSRYTGPSWKRSRRLGISLSGTGKE-ISRRNYAPGDHGPGNRTKVSEYGEQLKEKQKLRW 64 Query: 61 YYGDISEKKFRSIFKEADR-SRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 +G ++E++FR++F A + G N + LE RLD +VYR T ARQ VNH Sbjct: 65 MFG-LNERQFRNLFVLAGKIREGKHGVNFMIMLEKRLDNVVYRLGLATTREQARQLVNHG 123 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATF 179 H+LV+G+ V+I S++ K G I +K+KSK L V +A + A P +++ + M + Sbjct: 124 HILVDGKRVDIPSFQVKVGQEISLKEKSKNLQQVKDALE-ATVSRPAFVTFDESKMTGSL 182 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 VR+P + P + +LVVE+Y++ Sbjct: 183 VRLPERDEMEP---EIDESLVVEWYNK 206 >gi|67035734|gb|AAY62798.1| small ribosomal protein subunit 4 [Bryobartramia novae-valesiae] Length = 188 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 15 IGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 +G K+P S + K S + ++L KQK++ +YG I+E++ + Sbjct: 1 LGILPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQLLNYV 56 Query: 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYR 134 + A +++G T L+ LE RLD +V+R PTI ARQ VNHRH+LVN VNI SYR Sbjct: 57 RIARKAKGSTGQVLLQLLEMRLDNVVFRLGMAPTIPGARQLVNHRHILVNDCIVNIPSYR 116 Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPYPV 193 CK D I +K + K A +++ +++ VP ++S + +I L + Sbjct: 117 CKPQDFISIKNRQKSQAIIIKNIDFSQKYKVPNHLSFDSLQKKGLVNQI---LDRESIGL 173 Query: 194 IMQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 174 KINELLVVEYYSR 186 >gi|63078570|gb|AAY29372.1| ribosomal protein S4 [Chionoloma bombayense] Length = 197 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGTLPGLSNKTPHLKSSS---TSQSNSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGLILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNN 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R +NI SYRCK D I +K + K + + ++ +P +++ N +I Sbjct: 117 RILNIPSYRCKPQDFITIKDRQKSQVMITKNVDFFQKSKIPNHLTFNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDQELIGLKINELLVVEYYSR 195 >gi|49182811|gb|AAT57867.1| small ribosomal protein [Tetralophozia setiformis] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+ + SY K S + ++L KQK++ +YG ++E Sbjct: 1 RVKIIRRLGALPGLTSKTLKSKSSYI---DRSTSNKKVSQYRIRLEEKQKLRFHYG-LTE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD ++R PTI ARQ VNHRH+ VN + Sbjct: 57 RQLLKYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMSPTIPGARQLVNHRHISVNNDT 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY K GD+I ++ K K + + + L ++ +P +++ + + + + ++ Sbjct: 117 VDIPSYSRKSGDIITIRNKQKSQSIITKNINLFQKSKIPSHLTFDLTQLRGSVNQ---TV 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 NREWVNLKINELLVVEYYSR 193 >gi|28194741|gb|AAO33632.1|AF480987_1 ribosomal protein S4 [Pottia pallida] Length = 196 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 8/201 (3%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDIS 66 + KI RR+G L G + +S K S + ++L KQK++ +YG I+ Sbjct: 1 PRVKIIRRLGA-LPGLSNKIPHLKSSSTNQ--SISNKKISQYRIRLEEKQKLRFHYG-IT 56 Query: 67 EKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGR 126 E++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 ERQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNR 116 Query: 127 SVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSS 185 VNI SYRCK D I + ++ K + + ++ +P +++ N +I Sbjct: 117 IVNIPSYRCKPQDFITINERKKSQIMITKNVDFYQKYKIPNHLTFNSLEKKGLINQI--- 173 Query: 186 LKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 LDQESIGLKINELLVVEYYSR 194 >gi|67035662|gb|AAY62762.1| small ribosomal protein subunit 4 [Cheilothela chloropus] Length = 192 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGTLPGLTNKTPQLKSSS---TNQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN VNI Sbjct: 57 LNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDNIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A +++ +++ VP +++ N +I L Sbjct: 117 PSYRCKPQDFITIKNRQKSQAMIIKNLTFSQKAKVPNHLTFNSLENKGLVNQI---LDQE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|116010489|emb|CAL37351.1| ribosomal protein S4 [Gentiana cruciata] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR+G K P G L Q R K S + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRLGALPGLTNKGP----RAGTDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI AARQ VNHRH+LVN Sbjct: 56 RQLLKYVRIAGKAKGSTGRVLLQLLEMRLDNILFRLGMASTIPAARQLVNHRHILVNSHI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D+I K + K + ++ + ++P +++++ +I S Sbjct: 116 VDIPSYRCKPRDIITAKTEQKSRGLIQKSLDSSPHEELPSHLTLHPFQYKGLVNQIIDSK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|115314194|ref|YP_762917.1| 30S ribosomal protein S4 [Francisella tularensis subsp. holarctica OSU18] gi|122325768|sp|Q0BNQ4|RS4_FRATO RecName: Full=30S ribosomal protein S4 gi|115129093|gb|ABI82280.1| ribosomal protein S4 [Francisella tularensis subsp. holarctica OSU18] Length = 206 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 117/211 (55%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVN----TRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + N + PG HG R+++ S +GLQLR KQ Sbjct: 1 MARYLGPKCKLSRREGTDLFLKSGVKANDEKCKMNTAPGQHG-ARRARLSDYGLQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG I E +F+ + EA R +G+T L+ LESRLD +VYR F T ARQ V Sbjct: 60 KVRRMYG-ILEGQFKKYYVEASRRKGNTGATLLELLESRLDNVVYRMGFAATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNM 175 H+ ++VNG + N+ S + K GDV+ V++K+K+ + A +LA R +I VN D++ Sbjct: 119 VHKGIMVNGHTCNVPSAQVKVGDVVAVREKAKKQLRIQNAVELAKHRKELSWIDVNTDSL 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 T P + + L++E YS+ Sbjct: 179 EGTMKSSPDRSE---LSADINEQLIIELYSK 206 >gi|7576765|gb|AAF63979.1| small ribosomal protein 4 [Meiotrichum lyallii] Length = 191 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A R++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN R VNI Sbjct: 57 NYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNNRIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|26421809|gb|AAN78163.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K P + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I + + K + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DPESIGLKINELLVVEYYSR 193 >gi|37992479|gb|AAR06418.1| small ribosomal protein 4 [Cyathophorella tonkinensis] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMSPTIPGARQLVNHRHILVNDSIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SY+CK D I +K + K A + + + ++ +P +++ N +I L Sbjct: 117 DIPSYQCKPQDFITIKNQQKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|27227947|gb|AAN85771.1| ribosomal protein subunit 4 [Plagiobryum orthothecium] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P + + K S + ++L KQK++ +YG I+E+ Sbjct: 1 CRIIRRLGALPGLTNKTPQLKTNSI---NQSISNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD I++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLLEMRLDNIIFRLGMAPTIPGARQLVNHRHILVNDRIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 NI SYRCK D I +K + K A + + L ++ P +++ N +I L Sbjct: 117 NIPSYRCKPEDSITIKDRQKSQAIISKNLNLYQKYKTPNHLTYNFLKKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|67035978|gb|AAY62915.1| small ribosomal protein subunit 4 [Rhytidiadelphus triquetrus] Length = 194 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 VRIIRRLGTLPGLTSKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN V Sbjct: 57 QLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 DIPSYRCKPQDFITIKNQQKSETIISKNIEFYQKYKIPNHLTYSSLEKKGLVNQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|314906415|gb|ADT61780.1| ribosomal protein subunit 4 [Scleropodium touretii] Length = 196 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 10/202 (4%) Query: 7 SKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P G Q K S + ++L KQK++ +YG I Sbjct: 1 PRVRIIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG-I 55 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ E RLD +++R PTI ARQ VNHRH+LVN Sbjct: 56 TERQLLNYVRIARKAKGSTGEVLLQLPEMRLDNVIFRLGMAPTIPGARQLVNHRHILVND 115 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 V+I SYRCK D I +K + K + + + ++ +P +++ + +I Sbjct: 116 CIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLTYSFLEKKGLVNQI-- 173 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 174 -LDRESIGLKINELLVVEYYSR 194 >gi|22854729|gb|AAN09784.1| small ribosomal protein 4 [Orthodicranum flagellare] Length = 189 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 10/195 (5%) Query: 14 RIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 R+G K+P G Q K S + ++L KQK++ +YG I+E++ + Sbjct: 1 RLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQLLN 55 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI S Sbjct: 56 YVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNIPS 115 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + K A +++ +++ +P +++ + +I L Sbjct: 116 YRCKPQDFITIKDRQKSQAMIIKNIDFSQKYKIPNHLTFSSLEKKGLVNQI---LDQESI 172 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 GLKINELLVVEYYSR 187 >gi|37992641|gb|AAR06499.1| small ribosomal protein 4 [Penzigiella cordata] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S L K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSINQLTSN---KKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDCI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + + ++ +P +++ + +I L Sbjct: 117 VDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKSKIPNHLTYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|22854713|gb|AAN09776.1| small ribosomal protein 4 [Holomitrium cylindraceum] Length = 191 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 10/197 (5%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISEKKF 70 RR+G K+P G Q K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGTLPGLTNKTPQLK----SGSINQSTSNKKVSQYRIRLEEKQKLRFHYG-ITERQL 55 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R VNI Sbjct: 56 LNYVRIARKAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNNRIVNI 115 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A +++ +++ +P +++ + +I L Sbjct: 116 PSYRCKPQDFITIKDRQKSQAMIIKNIYFSQKSKIPNHLTFSSLEKRGLVNQI---LDQE 172 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 SIGLKINELLVVEYYSR 189 >gi|26421797|gb|AAN78157.1| ribosomal protein S4 [Tortula muralis] Length = 195 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K P + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGTLPGLSNKIPHLK---PSSTNQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R TI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGQILLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNNRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I + + K + + ++ +P +++ N +I L Sbjct: 117 VNIPSYRCKPQDFITINDRKKSQVMITKNVDFYQKSKIPNHLTFNSLEKKGLINQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DQESIGLKINELLVVEYYSR 193 >gi|319942197|ref|ZP_08016513.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 3_1_45B] gi|319804250|gb|EFW01142.1| 30S ribosomal protein S4 [Sutterella wadsworthensis 3_1_45B] Length = 208 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 10/212 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-KSPVNTRSY----GPGLHGQRRKSKPSYFGLQLRAK 55 M++ K K+ RR G +L + + ++ PG HG+ ++ S +G Q+R Sbjct: 1 MARYLGPKLKLSRREGIDLNLKSARRSFESKVKDVGSKPGQHGKISGARTSDYGNQMRET 60 Query: 56 QKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQF 115 QK K+ YG + E++FR F EA R RG+T L+ LESRLD +VYR F T +RQ Sbjct: 61 QKAKRMYG-VLERQFRRYFAEASRLRGNTGEKLLQLLESRLDNVVYRMGFGSTRAESRQL 119 Query: 116 VNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD-VPEYISVNHDN 174 V+H + VNGR VNI SY + GDVI +++K+++ + EA +LA+++ P ++ V+ Sbjct: 120 VSHGAIEVNGRKVNIPSYSVRAGDVITIREKAQKQVRIAEALELAQQNGFPAWVEVDAKK 179 Query: 175 MVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF P+ + P + L++E YSR Sbjct: 180 FTGTFKNAPARDEIAP---EINEALIIERYSR 208 >gi|157689416|gb|ABV65264.1| ribosomal protein S4 [Atuna racemosa] Length = 193 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 K RR+G K P L Q R K S + ++L KQK++ +YG ++E+ Sbjct: 1 FKKIRRLGALPGLTRKRP----RAVSDLRNQSRSGKKSQYRIRLEEKQKLRFHYG-LTER 55 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + A +++G T L+ +E RLD I++R TI ARQ VNHRH+LVNGR V Sbjct: 56 QLLKYVCIAAKAKGSTGQVLLQLIEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIV 115 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D+I VK + K A + A+ ++P++++ + +I S Sbjct: 116 DIPSYRCKPRDIITVKDEQKSRAMIQNHLDSSAQEELPKHLTFHPFQHKGLVNQIIDSK- 174 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 --WIGLKINELLVVEYYSR 191 >gi|32892116|gb|AAP88997.1| ribosomal protein S4 [Mitostemma brevifilis] gi|74273239|gb|ABA01319.1| ribosomal protein S4 [Dilkea johannesii] Length = 186 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 9/192 (4%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 G KSP+ G Q R K S + ++L KQK++ +YG ++E++ + Sbjct: 1 GALPGLTSKSPIA----GSAFQNQSRSGKKSQYCIRLEEKQKLRFHYG-LTERQLLKYVR 55 Query: 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRC 135 A +++G T L+ LE RLD I++R TI ARQ VNHRH+LVNGR V+I SYRC Sbjct: 56 IAAKAKGPTGQVLLQLLEMRLDNILFRLGMASTIPRARQLVNHRHILVNGRIVDIPSYRC 115 Query: 136 KEGDVIEVKQKSKQLASVLEAS-QLAERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVI 194 K D+I VK + K + + + +P++++++ +I S + Sbjct: 116 KPRDLITVKDEQKSKDMIQNSLDSFPQEKLPKHLTLHPFQYKGLVNQIIDSK---WVGLQ 172 Query: 195 MQPNLVVEFYSR 206 + LVVE+YSR Sbjct: 173 INELLVVEYYSR 184 >gi|63101093|gb|AAY33171.1| small ribosomal protein 4 [Desmotheca apiculata] Length = 197 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 8/202 (3%) Query: 6 SSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDI 65 + +I RR+G K+P S + K S + ++L KQK++ +YG I Sbjct: 1 GPRVRIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-I 56 Query: 66 SEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNG 125 +E++ + + A +++G T L+ LE RLD +++R PTI ARQ +NHRH+LVN Sbjct: 57 TERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLINHRHILVND 116 Query: 126 RSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPS 184 R V+I SYRCK D I +K K + + ++ +P ++ N +I Sbjct: 117 RIVDIPSYRCKPLDFITIKDGRKSQDIINKNIDFYQKSKIPNHLIYNSLEKKGLVNQI-- 174 Query: 185 SLKDVPYPVIMQPNLVVEFYSR 206 L + + LVVE+YSR Sbjct: 175 -LDRELIGLKINELLVVEYYSR 195 >gi|162448043|ref|YP_001621175.1| 30S ribosomal protein S4 [Acholeplasma laidlawii PG-8A] gi|189045362|sp|A9NHG9|RS4_ACHLI RecName: Full=30S ribosomal protein S4 gi|161986150|gb|ABX81799.1| small subunit ribosomal protein S4 [Acholeplasma laidlawii PG-8A] Length = 198 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 124/206 (60%), Gaps = 8/206 (3%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ S K+ RR+G ++ K + R Y PG HGQRR K S +G+QL+ KQK++ Sbjct: 1 MSRFTGSTWKVSRRLGYSISETGKE-LKKRPYAPGQHGQRRS-KLSNYGIQLQEKQKVRF 58 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YG +SEK+F+ F E+ + +G N + LESRLD +VYR F T ARQ VNH H Sbjct: 59 VYG-VSEKQFKKTFLESAKMQGKQGENFLKLLESRLDNVVYRLGFTKTRAQARQLVNHGH 117 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 +LV+G+ V+I SYR G +++K+KSK L V EA + A+ +Y++++ + V TF Sbjct: 118 ILVDGKKVDIPSYRLAPGQTVQLKEKSKNLTIVKEALE-AQFAHVDYVALDANG-VGTFS 175 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 R+P + + + L+VEFY+R Sbjct: 176 RLPERNE---FLFDINEQLIVEFYNR 198 >gi|160871805|ref|ZP_02061937.1| ribosomal protein S4 [Rickettsiella grylli] gi|159120604|gb|EDP45942.1| ribosomal protein S4 [Rickettsiella grylli] Length = 206 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 16/214 (7%) Query: 1 MSKRESSKHKIDRRIGENLWGRP-------KSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 M++ K+ RR+G +L + K + T PG+ ++ + S +G+ LR Sbjct: 1 MARYRGPTCKLARRLGTDLQLKSGIRALDSKCKLAT---PPGMQ-PAKRGRLSEYGVLLR 56 Query: 54 AKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAAR 113 KQ ++ YG I E++FR + +A + +G T NL+ LE RLD +VYR F T AR Sbjct: 57 QKQLIRHTYG-ILERQFRLYYTKASKRKGITGENLLKLLECRLDNVVYRMGFASTRAEAR 115 Query: 114 QFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNH 172 Q V+HR V VN VNI SY+ K GDVIE+K+KSK + A +L ++ P +I V+ Sbjct: 116 QLVSHRAVKVNSTIVNIPSYQVKVGDVIEIKEKSKSQTRIQAAIELTKQKPQPAWIDVDS 175 Query: 173 DNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 + F IP + P+ NLVVE+YS+ Sbjct: 176 TQLQGVFKLIPERSE---LPLEFNENLVVEYYSK 206 >gi|63191747|gb|AAY34833.1| small ribosomal protein subunit 4 [Brachymitrion jamesonii] Length = 194 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 8/199 (4%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEK 68 +I RR+G K+P S + K S + ++L KQK++ +YG I+E+ Sbjct: 1 CEIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKTSQYRIRLEEKQKLRFHYG-ITER 56 Query: 69 KFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSV 128 + + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R V Sbjct: 57 QLLNYVRMARKAKGSTGEILLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNERIV 116 Query: 129 NIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLK 187 +I SYRCK D I +K + K A + + + ++ +P +++ N +I L Sbjct: 117 DIPSYRCKPQDFITIKDRQKSQAIIKKNIEFYQKYKIPNHLTYNSLKNQGLINQI---LD 173 Query: 188 DVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 RESIGLKINELLVVEYYSR 192 >gi|293634097|gb|ADE60428.1| ribosomal protein subunit 4 [Polytrichastrum pallidisetum] Length = 191 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IRRLGALPGLTNKTPQLKSGYI---NQAVSNKKISQYRIRLEEKQKLRFHYG-ITERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + + A R++G T L+ LE RLD I++R TI ARQ VNH+H+LVN VNI Sbjct: 57 NYVRIARRAKGSTGQILLQLLEMRLDNIIFRLGMASTIPGARQLVNHKHILVNDHIVNIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVP 190 SYRCK D I +K + + A + +++ +P +++ N +I L Sbjct: 117 SYRCKPQDFITIKDRQESQAIIARNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRES 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 IGLKINELLVVEYYSR 189 >gi|42556394|gb|AAS19792.1| small ribosomal protein 4 [Balantiopsis cancellata] Length = 191 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR 71 RR+G K+ SY K S + ++L KQK++ +YG ++E++ Sbjct: 1 IRRLGALPGLTGKTLKQKSSYI---DRSTSTKKVSQYRIRLEEKQKLRFHYG-LTERQLL 56 Query: 72 SIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIG 131 + A +++G T L+ LE RLD ++R TI ARQ VNHRH+ +N V+I Sbjct: 57 KYVRIARKAKGSTGQVLLQLLEMRLDNTIFRLGMASTIPGARQLVNHRHISINNDIVDIP 116 Query: 132 SYRCKEGDVIEVKQKSKQLASVLEASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVP 190 SY C+ GD I V+ + K + + + L +P +++ + + + ++ Sbjct: 117 SYNCEPGDNITVRNRQKSQSIITKNINLFPNSKIPSHLTFDSTKLRGLVNQ---TINREL 173 Query: 191 YPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 INLKINELLVVEYYSR 189 >gi|37960585|gb|AAP70662.1| small ribosomal protein 4 [Sphagnum cyclophyllum] Length = 191 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 13 RRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS 72 RR+G K+P + SY + K S + ++L KQK++ +YG I+E++ Sbjct: 2 RRLGVLPGLTSKTPQSKSSYI---NQPISNKKVSQYRIRLEEKQKLRFHYG-ITERQLLK 57 Query: 73 IFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGS 132 + A R++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN +VNI S Sbjct: 58 YVRIARRAKGSTGQVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDHTVNIPS 117 Query: 133 YRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDVPY 191 YRCK D I +K + + A + + + P +++++ + +I Sbjct: 118 YRCKPQDFITIKDRQESQAIITRSMDYSRGYKTPNHLTLDSSQKKGSVNQIIDR---ESI 174 Query: 192 PVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 175 GLKINELLVVEYYSR 189 >gi|47606902|gb|AAT36371.1| ribosomal protein subunit 4 [Goniobryum subbasilare] Length = 195 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + +I RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVRIIRRLGTLPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN R Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDRI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK D I +K + K + + ++ +P +++ N +I L Sbjct: 117 VDIPSYRCKPQDFITIKDQQKYQTIISKNIYFYQKYKIPNHLTYNSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|116010533|emb|CAL38870.1| ribosomal protein S4 [Saxifraga rotundifolia] Length = 194 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 9/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + K RR G K P R G L Q R K + + ++L KQK++ +YG ++E Sbjct: 1 RFKKIRRTGALPGLTSKRP---RP-GSDLRNQPRSGKRTQYRIRLEEKQKLRFHYG-LTE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + A +++G T L+ LE RLD I++R TI ARQ VNHRHVLVNGR Sbjct: 56 RQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHVLVNGRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATFVRIPSSL 186 V+I SYRCK DVI K + K + + + +VP+Y++++ +I + Sbjct: 116 VDIPSYRCKPRDVITAKDEQKSKTLIQNSLDSSPHEEVPKYLTLHPFQYKGVVNQIIDNK 175 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 176 ---WVGLKINELLVVEYYSR 192 >gi|47606914|gb|AAT36377.1| ribosomal protein subunit 4 [Mesochaete undulata] Length = 195 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 8/200 (4%) Query: 8 KHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISE 67 + KI RR+G K+P S + K S + ++L KQK++ +YG I+E Sbjct: 1 RVKIIRRLGALPGLTNKTPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 56 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE RLD +++R PTI ARQ VNHRH+LVN + Sbjct: 57 RQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHILVNDQI 116 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 V+I SY+CK D I +K + K A + + ++ +P ++ + +I L Sbjct: 117 VDIPSYQCKPQDFITIKDRQKSQAIISKNIYFYQKYKIPNHLIYSSLEKKGLVNQI---L 173 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 DRESIGLKINELLVVEYYSR 193 >gi|20531103|gb|AAM27372.1| ribosomal protein 4 [Blindia magellanica] Length = 192 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K P S + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKIPQLKSSSI---NQSTSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN VNI Sbjct: 57 LNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMAPTIPGARQLVNHRHILVNNHIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D +K + K A V++ +++ VP +++ N +I L Sbjct: 117 PSYRCKPQDFFTIKDRQKSQAMVIKNIDFSQKYKVPNHLTFNSLEKKGLVNQI---LDHE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SIGLKINELLVVEYYSR 190 >gi|67035620|gb|AAY62741.1| small ribosomal protein subunit 4 [Dicranoloma eucamptodontoides] Length = 194 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 10/200 (5%) Query: 9 HKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRK-SKPSYFGLQLRAKQKMKKYYGDISE 67 ++ RR+G K+P G Q K S + ++L KQK++ +YG I+E Sbjct: 1 VRMIRRLGTLPGLTNKTPQLK----SGSINQSTSNKKISQYRIRLEEKQKLRFHYG-ITE 55 Query: 68 KKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRS 127 ++ + + A +++G T L+ LE R D +++R PTI ARQ VNHRH+LVN R Sbjct: 56 RQLLNYVRIARKAKGSTGQVLLQLLEMRSDNVIFRLGMTPTIPGARQLVNHRHILVNNRI 115 Query: 128 VNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSL 186 VNI SYRCK D I VK + K A +++ + +++ VP +++ + +I L Sbjct: 116 VNIPSYRCKPQDFITVKNRQKSQAMIIKNLEFSQKYKVPNHLTFSSLEKKGLVNQI---L 172 Query: 187 KDVPYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 173 DQESIGLKINELLVVEYYSR 192 >gi|293634027|gb|ADE60393.1| ribosomal protein subunit 4 [Pogonatum belangeri] gi|293634061|gb|ADE60410.1| ribosomal protein subunit 4 [Pogonatum usambaricum] Length = 192 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 11 IDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKF 70 I RR+G K+P Y + K S + ++L KQK++ +YG I+E++ Sbjct: 1 IIRRLGALPGLTNKTPQLKSGYI---NQTVSNKKISQYRIRLEEKQKLRFHYG-ITERQL 56 Query: 71 RSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNI 130 + + A +++G T L+ LE RLD I++R PTI ARQ VNH+H+LVN VNI Sbjct: 57 LNYVRIARKAKGSTGQILLQLLEMRLDNIIFRLGMAPTIPGARQLVNHKHILVNDHIVNI 116 Query: 131 GSYRCKEGDVIEVKQKSKQLASVLEASQLAER-DVPEYISVNHDNMVATFVRIPSSLKDV 189 SYRCK D I +K + K A + + +++ +P +++ N +I L Sbjct: 117 PSYRCKPQDFIIIKNRQKSQAIIAKNIDFSQKYKIPNHLTFNSLEKKGLVNQI---LDRE 173 Query: 190 PYPVIMQPNLVVEFYSR 206 + + LVVE+YSR Sbjct: 174 SISLKINELLVVEYYSR 190 >gi|42556432|gb|AAS19811.1| small ribosomal protein 4 [Isotachis humectata] Length = 191 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 8/196 (4%) Query: 12 DRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFR