RPSBLAST alignment for GI: 254780187 and conserved domain: pfam00163

>gnl|CDD|143931 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain. This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices. Length = 94

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 2  SKRESSKHKIDRRIGENLWGRPKSPVNTRSYG--PGLHGQRRKS--KPSYFGLQLRAKQK 57
          S+      K+ RR+GE      K+ +    YG  PG HG R K   + S + L+L  KQK
Sbjct: 1  SRYRGPTLKLPRRLGELPRLTAKTKLA-GEYGLRPGQHGWRVKKGRRLSRYLLRLDEKQK 59

Query: 58 MKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLE 93
          ++ +YG + E++ R     A +  G    NL+  LE
Sbjct: 60 LRFFYG-LLERQLRRYGVLAKKLDGSLGLNLLDLLE 94