RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str. psy62] (206 letters) >3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ... Length = 205 Score = 208 bits (531), Expect = 8e-55 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPKSPV----NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + PG HG R+ + S +G+QLR KQK+++ YG Sbjct: 7 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKVRRIYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 66 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 125 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 184 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 185 PER-SDLSADI--NEHLIVELYSK 205 >3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... Length = 206 Score = 190 bits (483), Expect = 3e-49 Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWG----RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ R PG HG R+ + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P D+ + +L+VE YS+ Sbjct: 179 EGTFKRKPER-SDLSADI--NEHLIVELYSK 206 >2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Length = 209 Score = 185 bits (470), Expect = 8e-48 Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 11/213 (5%) Query: 1 MSKRESSKHKIDRRIGENLWG------RPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRA 54 M + ++ RR G L+ PK + R Y PG HGQ+R +PS + ++LR Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE 60 Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQ 114 KQK+++ YG ISE++FR++F+EA + +G T + LESRLD +VYR F + ARQ Sbjct: 61 KQKLRRIYG-ISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQ 119 Query: 115 FVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHD 173 V H H+ VNGR V++ SYR + GD I V +KS+ L + + + + R V ++S++ + Sbjct: 120 LVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVE 179 Query: 174 NMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 M F+R+P +D+ PV LV+EFYSR Sbjct: 180 GMKGKFLRLPDR-EDLALPV--NEQLVIEFYSR 209 >3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 201 Score = 164 bits (416), Expect = 1e-41 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 9/207 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MS+ + K RR+G K P G L Q R K S + ++L KQK++ Sbjct: 1 MSRYRGPRFKKIRRLGALPGLTNKRP----RAGSDLRNQSRSGKRSQYRIRLEEKQKLRF 56 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 +YG I+E++ + A +++G T L+ LE RLD I++R PTI ARQ VNHRH Sbjct: 57 HYG-ITERQLLKYVRIARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRH 115 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVPEYISVNHDNMVATF 179 +LVNGR V+I SYRCK D I + + K +A + + L+ ++P+++++N Sbjct: 116 ILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELPKHLTLNPFPYKGLV 175 Query: 180 VRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +I + + LVVE+YSR Sbjct: 176 NQII---DSKWVGLKINELLVVEYYSR 199 >1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Length = 159 Score = 158 bits (400), Expect = 1e-39 Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 5/163 (3%) Query: 44 KPSYFGLQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRA 103 K S +GLQL+ KQK++ YG ++E++FR F+EA + G N + LESRLD +VYR Sbjct: 2 KLSEYGLQLQEKQKLRHMYG-VNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRL 60 Query: 104 KFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERD 163 T ARQ V H H+LV+G VNI SYR K G I V++KS+ L + EA + A Sbjct: 61 GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALE-ANNY 119 Query: 164 VPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 +P+Y+S + + M T+ R+P ++P + L+VEFYSR Sbjct: 120 IPDYLSFDPEKMEGTYTRLP-ERSELPAE--INEALIVEFYSR 159 >3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Length = 158 Score = 100 bits (251), Expect = 2e-22 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 2 SKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKY 61 S R ++ K+ G + K + S+ R++ + +++ + Sbjct: 16 SSRLDAELKLAGEFGL----KNKKEIYRISFQLSKI---RRAARDLLTRDEKDPKRLFEG 68 Query: 62 YGDISEKKFRSIFKEADRSRGD--TSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHR 119 + + R D+ + D + + FLE RL T VY+ ++ AR + R Sbjct: 69 NA-LIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQR 127 Query: 120 HVLVNGRSVNIGSYRCKEGDVIEVK 144 H+ V + VNI S+ + + Sbjct: 128 HIAVGKQIVNIPSFMVRLDSEKHID 152 >1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Length = 179 Score = 81.9 bits (202), Expect = 1e-16 Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 38 GQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRS--IFKEADRSRGDTSHNLISFLESR 95 + R++ + +++ + + + R + ++ + + + FLE R Sbjct: 32 SKIRRAARDLLTRDEKDPKRLFEGNA-LIRRLVRVGVLSEDKKKLDYVLALKVEDFLERR 90 Query: 96 LDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVK 144 L T VY+ ++ AR + RH+ V + VNI S+ + + Sbjct: 91 LQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHID 139 >2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Score = 76.7 bits (189), Expect = 4e-15 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 90 SFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEG--DVIEVKQKS 147 RL T++ + + + AA FV HV V V ++ D + S Sbjct: 4 GSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSS 63 Query: 148 K 148 K Sbjct: 64 K 64 >1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6 Length = 79 Score = 54.0 bits (130), Expect = 3e-08 Identities = 9/66 (13%), Positives = 21/66 (31%) Query: 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 +L L ++ + + A+ + V V+G + G + Sbjct: 14 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 Query: 147 SKQLAS 152 S Q+ + Sbjct: 74 SVQVVA 79 >1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A Length = 133 Score = 45.4 bits (107), Expect = 9e-06 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 93 ESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSK 148 E RLD ++ A+F T AR+ + V NG+ + S + + ++Q + Sbjct: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGND 62 >2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} Length = 92 Score = 42.2 bits (99), Expect = 8e-05 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 1/72 (1%) Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 R+D + V A N V +NG S K GD I + + Sbjct: 2 RIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKA-SKEVKAGDTISLHYLKGIEEYTI 60 Query: 155 EASQLAERDVPE 166 + + Sbjct: 61 LQIPALKNVPRK 72 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.2 bits (86), Expect = 0.003 Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 53/167 (31%) Query: 71 RSIFKEADRS--RGDTSHNLISFLESRLDT-IVYRAKFVPTIFAARQFVN------HRHV 121 E + G+ H L + L DT +V + + AR Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144 Query: 122 LVNGRSVNIGS--------------------------YRCKEGDVIEVKQKSKQLASVLE 155 L R+V G+ Y GD+I+ ++ L+ ++ Sbjct: 145 LF--RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF--SAETLSELIR 200 Query: 156 ASQLAERDVPEYISVNHDNMVATFVRIPSSLKDVPY--------PVI 194 + AE+ + + + + ++ PS+ D Y P+I Sbjct: 201 TTLDAEKVFTQGL----N--ILEWLENPSNTPDKDYLLSIPISCPLI 241 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} Length = 291 Score = 33.3 bits (76), Expect = 0.040 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 95 RLDTIVYRAKFVPTIFAARQFVNHRHV--LVNGRSVNIGSYRCKEGDVIEVKQKSKQLAS 152 R+D + Y+ T A++ V V ++NG + + +G +++K + + S Sbjct: 8 RVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVS 67 >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Length = 331 Score = 30.0 bits (67), Expect = 0.38 Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 9/76 (11%) Query: 50 LQLRAKQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 +R + + Y D I + + + ++S L ++ A T Sbjct: 154 ATVRFGEPLSGYNTD-FNVFVDDIARAM-------LQHRVIVIDS-LKNVIGAAGGNTTS 204 Query: 110 FAARQFVNHRHVLVNG 125 + + Sbjct: 205 GGISRGAFDLLSDIGA 220 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.0 bits (61), Expect = 1.4 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 12/38 (31%) Query: 144 KQKSKQLASVLEAS-QL-AERDVPEYISVNHDNMVATF 179 KQ K+ L+AS +L A+ P +++ AT Sbjct: 19 KQALKK----LQASLKLYADDSAPA-LAIK-----ATM 46 Score = 27.3 bits (59), Expect = 2.5 Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 6/18 (33%) Query: 55 KQKMKKY------YGDIS 66 KQ +KK Y D S Sbjct: 19 KQALKKLQASLKLYADDS 36 >1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325 Score = 27.6 bits (60), Expect = 2.0 Identities = 6/31 (19%), Positives = 16/31 (51%) Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIE 142 ++++ + VLVNG+ + + G+ + Sbjct: 35 IKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 65 >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 Length = 243 Score = 27.7 bits (60), Expect = 2.2 Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVI 141 A + + V +NG V GS + + D I Sbjct: 20 ATKAIRQSAVKINGEIVKSGSVQISQEDEI 49 >2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 Score = 27.0 bits (59), Expect = 3.4 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 16 GENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLR 53 GE R SP + +GPGL YF +Q Sbjct: 7 GETGGERQLSPEKSEIWGPGLKADVVL-PARYFYIQAV 43 >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} Length = 290 Score = 25.5 bits (55), Expect = 7.9 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 112 ARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQK 146 A +++ +V +NG+ IG + K GDV++V + Sbjct: 24 ADRYIEQGNVFLNGKRATIG-DQVKPGDVVKVNGQ 57 >3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Length = 213 Score = 25.5 bits (56), Expect = 8.4 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEV 143 L+S + L K A + + + V V+G++V + DVIE+ Sbjct: 10 LLSIIRDYL-------KLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 >3gwc_A TS, tsase, thymidylate synthase THYX; FAD, fdump, flavoprotein, methyltransferase, nucleotide biosynthesis, transferase; HET: FAD UFP; 1.90A {Mycobacterium tuberculosis} PDB: 3hzg_A* 2af6_A* 2gq2_A* Length = 258 Score = 25.5 bits (55), Expect = 8.8 Identities = 4/20 (20%), Positives = 8/20 (40%) Query: 108 TIFAARQFVNHRHVLVNGRS 127 + + + HRH + S Sbjct: 86 SRSCTHELIRHRHFSYSQLS 105 >2kt1_A Phosphatidylinositol 3-kinase regulatory subunit beta; structural genomics, northeast structural genomics consortium (NESG), target HR5531E, PSI-2; NMR {Homo sapiens} Length = 88 Score = 25.4 bits (55), Expect = 9.2 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 5/58 (8%) Query: 135 CKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMV-----ATFVRIPSSLK 187 GDV+ V + + Q V E + + V +N T+V L+ Sbjct: 25 LLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPLE 82 >1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Score = 25.5 bits (55), Expect = 9.5 Identities = 8/55 (14%), Positives = 19/55 (34%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTI 109 + ++ +K + + AD+ NL S+ SR+ + + Sbjct: 139 WEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREY 193 >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 Score = 25.3 bits (55), Expect = 9.5 Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 55 KQKMKKYYGDISEKKFRSIFKEADRSRGDT 84 K +K+ + + R IF+E D S+ D+ Sbjct: 34 KDFLKELNIQVDDGYARKIFRECDHSQTDS 63 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,682,940 Number of extensions: 72399 Number of successful extensions: 238 Number of sequences better than 10.0: 1 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 29 Length of query: 206 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 118 Effective length of database: 3,559,758 Effective search space: 420051444 Effective search space used: 420051444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (24.8 bits)