Query gi|254780188|ref|YP_003064601.1| hypothetical protein CLIBASIA_00355 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 36
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 07:45:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780188.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3geh_A MNME, tRNA modificatio 31.8 2.9 8.7E-05 22.3 -3.0 12 22-33 6-17 (75)
2 >1xzp_A Probable tRNA modifica 23.0 4.9 0.00015 21.2 -3.1 12 22-33 6-17 (179)
3 >3gee_A MNME, tRNA modificatio 22.6 5.1 0.00015 21.2 -3.1 12 22-33 6-17 (62)
4 >1xrt_A Dihydroorotase, dhoase 13.1 67 0.002 15.7 0.7 15 22-36 193-207 (207)
5 >2nwa_A Hypothetical protein Y 9.1 71 0.0021 15.6 -0.3 12 8-19 7-18 (88)
6 >1p1m_A Hypothetical protein T 6.1 2.5E+02 0.0074 12.9 1.4 12 25-36 89-100 (106)
7 >2f2u_A RHO-associated protein 5.6 62 0.0018 15.8 -2.0 23 11-33 97-119 (127)
8 >2wvx_A Mannosidase, putative 5.5 2.8E+02 0.0082 12.7 1.4 18 16-33 116-133 (183)
9 >2vqx_A Metalloproteinase; the 5.2 2.7E+02 0.0081 12.7 1.1 13 24-36 131-144 (155)
10 >2czr_A TBP-interacting protei 4.8 3.1E+02 0.0092 12.4 2.0 17 11-28 61-78 (82)
No 1
>>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} (A:115-189)
Probab=31.75 E-value=2.9 Score=22.32 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=9.6
Q ss_pred EEEEEEEEEEEE
Q ss_conf 864233410676
Q gi|254780188|r 22 FIKNAFINGKMI 33 (36)
Q Consensus 22 fiknafingkmi 33 (36)
|-+.||+||||-
T Consensus 6 FT~RAFlNgKid 17 (75)
T 3geh_A 6 FTLRAFLNGRLD 17 (75)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHHCCCC
T ss_conf 367788744665
No 2
>>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} (A:135-242,A:412-482)
Probab=23.00 E-value=4.9 Score=21.21 Aligned_cols=12 Identities=67% Similarity=1.005 Sum_probs=9.3
Q ss_pred EEEEEEEEEEEE
Q ss_conf 864233410676
Q gi|254780188|r 22 FIKNAFINGKMI 33 (36)
Q Consensus 22 fiknafingkmi 33 (36)
|-+.||.||||=
T Consensus 6 FT~RAFlNGKiD 17 (179)
T 1xzp_A 6 FTKRAFLNGKMD 17 (179)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHHCCCCC
T ss_conf 899765235645
No 3
>>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* (A:123-166,A:459-476)
Probab=22.64 E-value=5.1 Score=21.15 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=9.4
Q ss_pred EEEEEEEEEEEE
Q ss_conf 864233410676
Q gi|254780188|r 22 FIKNAFINGKMI 33 (36)
Q Consensus 22 fiknafingkmi 33 (36)
|-+.||+||||-
T Consensus 6 FTkRAFlNGKlD 17 (62)
T 3gee_A 6 FTRRAFLNGRID 17 (62)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHHHCCCC
T ss_conf 178898713551
No 4
>>1xrt_A Dihydroorotase, dhoase; zinc, amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} (A:1-101,A:362-467)
Probab=13.12 E-value=67 Score=15.68 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.3
Q ss_pred EEEEEEEEEEEEEEC
Q ss_conf 864233410676609
Q gi|254780188|r 22 FIKNAFINGKMIFED 36 (36)
Q Consensus 22 fiknafingkmifed 36 (36)
.+...++||+.+|+|
T Consensus 193 ~V~~tiv~G~~v~~d 207 (207)
T 1xrt_A 193 KVIYTIKDGKMVYKD 207 (207)
T ss_dssp EEEEEEETTEEEEEC
T ss_pred EEEEEEECCEEEEEC
T ss_conf 699999999999989
No 5
>>2nwa_A Hypothetical protein YTMB; mostly beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Bacillus subtilis} (A:)
Probab=9.14 E-value=71 Score=15.58 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=8.6
Q ss_pred EEEEEEECCCEE
Q ss_conf 658997355044
Q gi|254780188|r 8 YKTIIVSKGKVE 19 (36)
Q Consensus 8 yktiivskgkve 19 (36)
..|.||+|||-.
T Consensus 7 ~~TmIVTkgkE~ 18 (88)
T 2nwa_A 7 FNTLIVTKGKEV 18 (88)
T ss_dssp ECSSEECCSCCE
T ss_pred EEEEEEECCCCC
T ss_conf 889998479744
No 6
>>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} (A:1-50,A:332-387)
Probab=6.10 E-value=2.5e+02 Score=12.91 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=5.0
Q ss_pred EEEEEEEEEEEC
Q ss_conf 233410676609
Q gi|254780188|r 25 NAFINGKMIFED 36 (36)
Q Consensus 25 nafingkmifed 36 (36)
..++||+++++|
T Consensus 89 ~ViVnGRiVvrD 100 (106)
T 1p1m_A 89 ATMVAGKWIYFD 100 (106)
T ss_dssp EEEETTEEEEET
T ss_pred EEEECCEEEEEC
T ss_conf 999999899999
No 7
>>2f2u_A RHO-associated protein kinase 2; enzyme-inhibitor complex, transferase; HET: M77; 2.40A {Bos taurus} PDB: 2h9v_A* 2v55_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* (A:74-156,A:359-402)
Probab=5.55 E-value=62 Score=15.85 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=17.2
Q ss_pred EEEECCCEEEEEEEEEEEEEEEE
Q ss_conf 99735504469864233410676
Q gi|254780188|r 11 IIVSKGKVESFFIKNAFINGKMI 33 (36)
Q Consensus 11 iivskgkvesffiknafingkmi 33 (36)
|--.||.||.|-|..||.....-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~ 119 (127)
T 2f2u_A 97 IEDDKGDVETFPIPKAFVGNQLP 119 (127)
T ss_dssp CC-----CCCCCCCSSCCCSSGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88777755578998443234671
No 8
>>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvx_B* (A:269-292,A:586-744)
Probab=5.53 E-value=2.8e+02 Score=12.67 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.0
Q ss_pred CCEEEEEEEEEEEEEEEE
Q ss_conf 504469864233410676
Q gi|254780188|r 16 GKVESFFIKNAFINGKMI 33 (36)
Q Consensus 16 gkvesffiknafingkmi 33 (36)
...+..||+.+-+|||..
T Consensus 116 ~s~~n~YIqsv~lNGk~~ 133 (183)
T 2wvx_A 116 NSTENFYIDSXSFNGADH 133 (183)
T ss_dssp CCSSCCEEEEEEETTEEC
T ss_pred CCCCCCCEEEEEECCEEC
T ss_conf 998774057999999798
No 9
>>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans} (A:1-155)
Probab=5.24 E-value=2.7e+02 Score=12.71 Aligned_cols=13 Identities=62% Similarity=1.104 Sum_probs=8.7
Q ss_pred EEEEEEEE-EEEEC
Q ss_conf 42334106-76609
Q gi|254780188|r 24 KNAFINGK-MIFED 36 (36)
Q Consensus 24 knafingk-mifed 36 (36)
-|||-||. |.|-|
T Consensus 131 ~NAfWdG~~M~fGD 144 (155)
T 2vqx_A 131 QNAFWNGQQMVFGD 144 (155)
T ss_dssp CCEEECSSCEEECC
T ss_pred CCCCCCCCCEEECC
T ss_conf 66622677348758
No 10
>>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} (A:14-95)
Probab=4.82 E-value=3.1e+02 Score=12.43 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=0.0
Q ss_pred EEEECCCEEEEEEEE-EEE
Q ss_conf 997355044698642-334
Q gi|254780188|r 11 IIVSKGKVESFFIKN-AFI 28 (36)
Q Consensus 11 iivskgkvesffikn-afi 28 (36)
|+|-.+| ..|+|+| |||
T Consensus 61 i~vvP~k-gtFyi~NGaFi 78 (82)
T 2czr_A 61 IVAIPDN-GVFYIKNGSFV 78 (82)
T ss_dssp EEEESCT-TCEEEETTEEE
T ss_pred EEEECCC-CEEEEECCEEE
T ss_conf 9997799-75999566478
Done!