Query gi|254780188|ref|YP_003064601.1| hypothetical protein CLIBASIA_00355 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 36
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 06:02:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780188.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3geh_A MNME, tRNA modification 9.5 14 0.00057 18.3 -3.0 11 22-32 120-130 (462)
2 2nwa_A Hypothetical protein YT 5.6 93 0.0039 14.2 -0.3 11 9-19 8-18 (88)
3 1oq1_A Protein YESU; structura 5.5 1.9E+02 0.0082 12.7 3.2 25 6-35 159-183 (223)
4 1xov_A PLY protein, plypsa; al 4.3 1.5E+02 0.0063 13.2 0.0 23 5-27 233-257 (326)
5 2k0q_A Putative uncharacterize 4.2 2E+02 0.0083 12.6 0.6 11 26-36 20-30 (74)
6 2eqk_A Tudor domain-containing 3.9 2.6E+02 0.011 12.0 2.2 20 6-25 37-59 (85)
7 1t4n_A Ribonuclease III; DSRBD 3.7 2.7E+02 0.011 12.0 1.5 28 8-35 25-52 (94)
8 1mhn_A SurviVal motor neuron p 3.7 2.7E+02 0.012 12.0 2.6 17 7-23 20-40 (59)
9 1g5v_A SurviVal motor neuron p 3.4 2.9E+02 0.012 11.8 2.6 17 7-23 27-47 (88)
10 1t4o_A Ribonuclease III; RNT1P 3.1 3.2E+02 0.013 11.6 2.6 28 8-35 27-54 (117)
No 1
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP}
Probab=9.53 E-value=14 Score=18.32 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=4.7
Q ss_pred EEEEEEEEEEE
Q ss_conf 86423341067
Q gi|254780188|r 22 FIKNAFINGKM 32 (36)
Q Consensus 22 fiknafingkm 32 (36)
|-+.||+||||
T Consensus 120 FT~RAflNgKi 130 (462)
T 3geh_A 120 FTLRAFLNGRL 130 (462)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHCCCC
T ss_conf 87999976999
No 2
>2nwa_A Hypothetical protein YTMB; mostly beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Bacillus subtilis} SCOP: b.122.1.13
Probab=5.64 E-value=93 Score=14.25 Aligned_cols=11 Identities=55% Similarity=0.733 Sum_probs=7.8
Q ss_pred EEEEEECCCEE
Q ss_conf 58997355044
Q gi|254780188|r 9 KTIIVSKGKVE 19 (36)
Q Consensus 9 ktiivskgkve 19 (36)
.|+||+|||-.
T Consensus 8 nT~IvtkgkE~ 18 (88)
T 2nwa_A 8 NTLIVTKGKEV 18 (88)
T ss_dssp CSSEECCSCCE
T ss_pred EEEEEECCCCC
T ss_conf 99998478744
No 3
>1oq1_A Protein YESU; structural genomics, singleton, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus subtilis} SCOP: b.29.1.17
Probab=5.55 E-value=1.9e+02 Score=12.68 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=18.5
Q ss_pred EEEEEEEEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf 666589973550446986423341067660
Q gi|254780188|r 6 DWYKTIIVSKGKVESFFIKNAFINGKMIFE 35 (36)
Q Consensus 6 dwyktiivskgkvesffiknafingkmife 35 (36)
+|++.-|+.+|..-++ +|||+.+++
T Consensus 159 eWn~~~I~v~G~~i~~-----~lNG~~v~d 183 (223)
T 1oq1_A 159 SPYRMKLIKDKGYVHF-----SINGLPILE 183 (223)
T ss_dssp SCEEEEEEEETTEEEE-----EETTEEEEE
T ss_pred CCEEEEEEEECCEEEE-----EECCEEEEE
T ss_conf 9789999999999999-----989999999
No 4
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=4.28 E-value=1.5e+02 Score=13.23 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=12.6
Q ss_pred EEEEEEEEEECCC--EEEEEEEEEE
Q ss_conf 5666589973550--4469864233
Q gi|254780188|r 5 LDWYKTIIVSKGK--VESFFIKNAF 27 (36)
Q Consensus 5 ldwyktiivskgk--vesffiknaf 27 (36)
.+||++.+-+++- -+||.|+|+-
T Consensus 233 g~Wy~~~~~~~~~y~~~~f~~~~~~ 257 (326)
T 1xov_A 233 KYWYKAYINDKLCYIYKSFCISNGK 257 (326)
T ss_dssp SSEEEEEETTEEEEEEGGGEEECCC
T ss_pred CCEEEEEECCCEEEEEEEEEEECCC
T ss_conf 9579998669404572007997267
No 5
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 3dso_A 3dsp_A
Probab=4.24 E-value=2e+02 Score=12.65 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=8.3
Q ss_pred EEEEEEEEEEC
Q ss_conf 33410676609
Q gi|254780188|r 26 AFINGKMIFED 36 (36)
Q Consensus 26 afingkmifed 36 (36)
.|-+|||-.||
T Consensus 20 iFKDGKM~mEd 30 (74)
T 2k0q_A 20 VFKDGKMGMEN 30 (74)
T ss_dssp EETTSCEEEEC
T ss_pred EECCCCEEHHH
T ss_conf 97278211001
No 6
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=3.89 E-value=2.6e+02 Score=12.04 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=14.5
Q ss_pred EEEEEEEEE---CCCEEEEEEEE
Q ss_conf 666589973---55044698642
Q gi|254780188|r 6 DWYKTIIVS---KGKVESFFIKN 25 (36)
Q Consensus 6 dwyktiivs---kgkvesffikn 25 (36)
.||...|.+ .++++-||+.-
T Consensus 37 ~WyRa~I~~i~~~~~v~V~fvDy 59 (85)
T 2eqk_A 37 QWRRGQIIRMVTDTLVEVLLYDV 59 (85)
T ss_dssp CEEEEEEEEECSSSEEEEECTTT
T ss_pred EEEEEEEEECCCCCEEEEEEECC
T ss_conf 79999975138998389999777
No 7
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=3.72 E-value=2.7e+02 Score=11.97 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEEEEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf 6589973550446986423341067660
Q gi|254780188|r 8 YKTIIVSKGKVESFFIKNAFINGKMIFE 35 (36)
Q Consensus 8 yktiivskgkvesffiknafingkmife 35 (36)
|.++-.+.+.-..||+.-.+.||+.+-+
T Consensus 25 Y~~~~~~~~~~~~f~v~~~v~~~~~~~~ 52 (94)
T 1t4n_A 25 YVTVKKPTAVDPNSIVECRVGDGTVLGT 52 (94)
T ss_dssp EEECCCCSSSCCSEEEEEECSSSCEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEECCEEEEE
T ss_conf 9997406878997999999948848999
No 8
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
Probab=3.70 E-value=2.7e+02 Score=11.95 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEEEE----CCCEEEEEE
Q ss_conf 66589973----550446986
Q gi|254780188|r 7 WYKTIIVS----KGKVESFFI 23 (36)
Q Consensus 7 wyktiivs----kgkvesffi 23 (36)
||...|.+ .++++-+|+
T Consensus 20 wYRA~I~~i~~~~~~~~V~fv 40 (59)
T 1mhn_A 20 IYPATIASIDFKRETCVVVYT 40 (59)
T ss_dssp EEEEEEEEEETTTTEEEEEET
T ss_pred EEEEEEEEECCCCCEEEEEEE
T ss_conf 988999997188999999996
No 9
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=3.42 E-value=2.9e+02 Score=11.82 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEEEE----CCCEEEEEE
Q ss_conf 66589973----550446986
Q gi|254780188|r 7 WYKTIIVS----KGKVESFFI 23 (36)
Q Consensus 7 wyktiivs----kgkvesffi 23 (36)
||...|++ .+++.-||+
T Consensus 27 wYRA~I~~i~~~~~~~~V~fv 47 (88)
T 1g5v_A 27 IYPATIASIDFKRETCVVVYT 47 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEET
T ss_pred EEEEEEEEECCCCCEEEEEEE
T ss_conf 989999985378996999999
No 10
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B
Probab=3.11 E-value=3.2e+02 Score=11.65 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEEEEEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf 6589973550446986423341067660
Q gi|254780188|r 8 YKTIIVSKGKVESFFIKNAFINGKMIFE 35 (36)
Q Consensus 8 yktiivskgkvesffiknafingkmife 35 (36)
|+++-...+.-..||+...+++|+.+.+
T Consensus 27 Y~~~~~~~~~~~~f~v~~~i~~~~~~g~ 54 (117)
T 1t4o_A 27 YVTVKKPTAVDPNSIVECRVGDGTVLGT 54 (117)
T ss_dssp EEEEECCCSSCCCEEEEEECTTCCEEEE
T ss_pred EEEEEECCCCCCCEEEEEEEECCCEEEE
T ss_conf 8997624877875799999967968887
Done!