Query         gi|254780188|ref|YP_003064601.1| hypothetical protein CLIBASIA_00355 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 36
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Mon May 23 04:31:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780188.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1oq1a_ b.29.1.17 (A:) Hypothe  11.9      57  0.0041   14.1   3.1   25    6-35    159-183 (223)
  2 d1xrta1 b.92.1.3 (A:1-55,A:366   7.6      86  0.0063   13.3   2.0   14   23-36     99-112 (112)
  3 d1m7ja2 b.92.1.6 (A:420-480) N   5.9 1.1E+02  0.0078   12.8   1.9   15   22-36     33-47  (61)
  4 d2nwaa1 b.122.1.13 (A:1-80) Hy   5.7      53  0.0039   14.3  -0.3   12    8-19      7-18  (80)
  5 d1p1ma1 b.92.1.4 (A:1-49,A:331   5.2 1.2E+02  0.0086   12.6   1.4   14   23-36     87-100 (123)
  6 d2hqxa1 b.34.9.1 (A:8-97) P100   3.4 1.7E+02   0.012   11.8   2.6   20    6-25     40-62  (90)
  7 d1mhna_ b.34.9.1 (A:) Survival   2.6 2.1E+02   0.015   11.3   2.6   19    6-24     19-41  (59)
  8 d2d9ta1 b.34.9.1 (A:8-67) Tudo   2.4 2.2E+02   0.016   11.2   2.6   19    6-24     18-40  (60)
  9 d1mkaa_ d.38.1.2 (A:) beta-Hyd   2.3 2.3E+02   0.017   11.1   5.7   33    3-35    124-156 (171)
 10 d1i27a_ a.4.5.30 (A:) C-termin   2.3 2.4E+02   0.017   11.1   0.8    7   28-34     63-69  (73)

No 1  
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}
Probab=11.87  E-value=57  Score=14.13  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=17.9

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf             666589973550446986423341067660
Q gi|254780188|r    6 DWYKTIIVSKGKVESFFIKNAFINGKMIFE   35 (36)
Q Consensus         6 dwyktiivskgkvesffiknafingkmife   35 (36)
                      +|++--|+.+|..-+     .+|||+.+++
T Consensus       159 eWn~~~I~v~G~~i~-----~~lNG~~v~d  183 (223)
T d1oq1a_         159 SPYRMKLIKDKGYVH-----FSINGLPILE  183 (223)
T ss_dssp             SCEEEEEEEETTEEE-----EEETTEEEEE
T ss_pred             CCEEEEEEEECCEEE-----EEECCEEEEE
T ss_conf             738999999999999-----9999999999


No 2  
>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}
Probab=7.57  E-value=86  Score=13.25  Aligned_cols=14  Identities=29%  Similarity=0.702  Sum_probs=9.9

Q ss_pred             EEEEEEEEEEEEEC
Q ss_conf             64233410676609
Q gi|254780188|r   23 IKNAFINGKMIFED   36 (36)
Q Consensus        23 iknafingkmifed   36 (36)
                      +...|++|+.+|+|
T Consensus        99 v~~T~~~G~~v~~d  112 (112)
T d1xrta1          99 VIYTIKDGKMVYKD  112 (112)
T ss_dssp             EEEEEETTEEEEEC
T ss_pred             EEEEEECCEEEEEC
T ss_conf             99999999999869


No 3  
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=5.89  E-value=1.1e+02  Score=12.79  Aligned_cols=15  Identities=33%  Similarity=0.731  Sum_probs=10.9

Q ss_pred             EEEEEEEEEEEEEEC
Q ss_conf             864233410676609
Q gi|254780188|r   22 FIKNAFINGKMIFED   36 (36)
Q Consensus        22 fiknafingkmifed   36 (36)
                      =|...++||+.++++
T Consensus        33 Gi~~v~VnG~~v~~~   47 (61)
T d1m7ja2          33 GIHSVYVNGAAVWED   47 (61)
T ss_dssp             SEEEEEETTEEEEET
T ss_pred             EEEEEEECCEEEEEC
T ss_conf             068999897899999


No 4  
>d2nwaa1 b.122.1.13 (A:1-80) Hypothetical protein YtmB {Bacillus subtilis [TaxId: 1423]}
Probab=5.71  E-value=53  Score=14.28  Aligned_cols=12  Identities=50%  Similarity=0.814  Sum_probs=8.4

Q ss_pred             EEEEEEECCCEE
Q ss_conf             658997355044
Q gi|254780188|r    8 YKTIIVSKGKVE   19 (36)
Q Consensus         8 yktiivskgkve   19 (36)
                      ..|+||+|||-.
T Consensus         7 ~nT~ivtkgke~   18 (80)
T d2nwaa1           7 FNTLIVTKGKEV   18 (80)
T ss_dssp             ECSSEECCSCCE
T ss_pred             EEEEEEECCCCC
T ss_conf             889998568644


No 5  
>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]}
Probab=5.23  E-value=1.2e+02  Score=12.57  Aligned_cols=14  Identities=29%  Similarity=0.553  Sum_probs=10.6

Q ss_pred             EEEEEEEEEEEEEC
Q ss_conf             64233410676609
Q gi|254780188|r   23 IKNAFINGKMIFED   36 (36)
Q Consensus        23 iknafingkmifed   36 (36)
                      ++..++||+.+++|
T Consensus        87 V~~V~V~Gk~Vv~d  100 (123)
T d1p1ma1          87 VFATMVAGKWIYFD  100 (123)
T ss_dssp             CSEEEETTEEEEET
T ss_pred             CCEEEECCEEEEEC
T ss_conf             63899989999999


No 6  
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.36  E-value=1.7e+02  Score=11.79  Aligned_cols=20  Identities=25%  Similarity=0.795  Sum_probs=14.1

Q ss_pred             EEEEEEEEE---CCCEEEEEEEE
Q ss_conf             666589973---55044698642
Q gi|254780188|r    6 DWYKTIIVS---KGKVESFFIKN   25 (36)
Q Consensus         6 dwyktiivs---kgkvesffikn   25 (36)
                      .||...|++   .++++-+|+.-
T Consensus        40 ~wyRa~V~~~~~~~~~~V~~vDy   62 (90)
T d2hqxa1          40 EWYRARVEKVESPAKIHVFYIDY   62 (90)
T ss_dssp             CEEEEEEEEEEETTEEEEEETTT
T ss_pred             CEEEEEEEEECCCCEEEEEEEEC
T ss_conf             89899999967999599999948


No 7  
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60  E-value=2.1e+02  Score=11.34  Aligned_cols=19  Identities=16%  Similarity=0.197  Sum_probs=13.4

Q ss_pred             EEEEEEEEE----CCCEEEEEEE
Q ss_conf             666589973----5504469864
Q gi|254780188|r    6 DWYKTIIVS----KGKVESFFIK   24 (36)
Q Consensus         6 dwyktiivs----kgkvesffik   24 (36)
                      -||...|.+    .++++-+|+.
T Consensus        19 ~wYRA~I~~v~~~~~~~~V~fvD   41 (59)
T d1mhna_          19 CIYPATIASIDFKRETCVVVYTG   41 (59)
T ss_dssp             CEEEEEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEEEECCCCCEEEEEEEE
T ss_conf             89899999974889999999980


No 8  
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.42  E-value=2.2e+02  Score=11.21  Aligned_cols=19  Identities=11%  Similarity=0.179  Sum_probs=13.0

Q ss_pred             EEEEEEEEEC----CCEEEEEEE
Q ss_conf             6665899735----504469864
Q gi|254780188|r    6 DWYKTIIVSK----GKVESFFIK   24 (36)
Q Consensus         6 dwyktiivsk----gkvesffik   24 (36)
                      .||...|.+.    +.++-+|+.
T Consensus        18 ~wYRA~I~~i~~~~~~~~V~fvD   40 (60)
T d2d9ta1          18 KFYRAEVEALHSSGMTAVVKFTD   40 (60)
T ss_dssp             CEEEEEEEEECSSSSEEEEEETT
T ss_pred             CEEEEEEEEECCCCCEEEEEEEC
T ss_conf             79999999982789999999987


No 9  
>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase {Escherichia coli [TaxId: 562]}
Probab=2.28  E-value=2.3e+02  Score=11.11  Aligned_cols=33  Identities=12%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf             985666589973550446986423341067660
Q gi|254780188|r    3 LYLDWYKTIIVSKGKVESFFIKNAFINGKMIFE   35 (36)
Q Consensus         3 lyldwyktiivskgkvesffiknafingkmife   35 (36)
                      +-++-..+-+.+++..-.++--.++.||++++|
T Consensus       124 ~~~~i~~~~i~~~~~~~~~~~g~~~Vdgk~v~e  156 (171)
T d1mkaa_         124 VTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYT  156 (171)
T ss_dssp             EEEEEEEEEEEESSSEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEECCEEEEE
T ss_conf             999999999874374899999999989999999


No 10 
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.27  E-value=2.4e+02  Score=11.11  Aligned_cols=7  Identities=71%  Similarity=0.961  Sum_probs=0.0

Q ss_pred             EEEEEEE
Q ss_conf             4106766
Q gi|254780188|r   28 INGKMIF   34 (36)
Q Consensus        28 ingkmif   34 (36)
                      |+|||-|
T Consensus        63 i~gK~yl   69 (73)
T d1i27a_          63 INDKMHF   69 (73)
T ss_dssp             ETTEEEE
T ss_pred             HCCEEEE
T ss_conf             1676787


Done!