Query gi|254780188|ref|YP_003064601.1| hypothetical protein CLIBASIA_00355 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 36 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Mon May 23 04:31:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780188.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1oq1a_ b.29.1.17 (A:) Hypothe 11.9 57 0.0041 14.1 3.1 25 6-35 159-183 (223) 2 d1xrta1 b.92.1.3 (A:1-55,A:366 7.6 86 0.0063 13.3 2.0 14 23-36 99-112 (112) 3 d1m7ja2 b.92.1.6 (A:420-480) N 5.9 1.1E+02 0.0078 12.8 1.9 15 22-36 33-47 (61) 4 d2nwaa1 b.122.1.13 (A:1-80) Hy 5.7 53 0.0039 14.3 -0.3 12 8-19 7-18 (80) 5 d1p1ma1 b.92.1.4 (A:1-49,A:331 5.2 1.2E+02 0.0086 12.6 1.4 14 23-36 87-100 (123) 6 d2hqxa1 b.34.9.1 (A:8-97) P100 3.4 1.7E+02 0.012 11.8 2.6 20 6-25 40-62 (90) 7 d1mhna_ b.34.9.1 (A:) Survival 2.6 2.1E+02 0.015 11.3 2.6 19 6-24 19-41 (59) 8 d2d9ta1 b.34.9.1 (A:8-67) Tudo 2.4 2.2E+02 0.016 11.2 2.6 19 6-24 18-40 (60) 9 d1mkaa_ d.38.1.2 (A:) beta-Hyd 2.3 2.3E+02 0.017 11.1 5.7 33 3-35 124-156 (171) 10 d1i27a_ a.4.5.30 (A:) C-termin 2.3 2.4E+02 0.017 11.1 0.8 7 28-34 63-69 (73) No 1 >d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Probab=11.87 E-value=57 Score=14.13 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=17.9 Q ss_pred EEEEEEEEECCCEEEEEEEEEEEEEEEEEE Q ss_conf 666589973550446986423341067660 Q gi|254780188|r 6 DWYKTIIVSKGKVESFFIKNAFINGKMIFE 35 (36) Q Consensus 6 dwyktiivskgkvesffiknafingkmife 35 (36) +|++--|+.+|..-+ .+|||+.+++ T Consensus 159 eWn~~~I~v~G~~i~-----~~lNG~~v~d 183 (223) T d1oq1a_ 159 SPYRMKLIKDKGYVH-----FSINGLPILE 183 (223) T ss_dssp SCEEEEEEEETTEEE-----EEETTEEEEE T ss_pred CCEEEEEEEECCEEE-----EEECCEEEEE T ss_conf 738999999999999-----9999999999 No 2 >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Probab=7.57 E-value=86 Score=13.25 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=9.9 Q ss_pred EEEEEEEEEEEEEC Q ss_conf 64233410676609 Q gi|254780188|r 23 IKNAFINGKMIFED 36 (36) Q Consensus 23 iknafingkmifed 36 (36) +...|++|+.+|+| T Consensus 99 v~~T~~~G~~v~~d 112 (112) T d1xrta1 99 VIYTIKDGKMVYKD 112 (112) T ss_dssp EEEEEETTEEEEEC T ss_pred EEEEEECCEEEEEC T ss_conf 99999999999869 No 3 >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Probab=5.89 E-value=1.1e+02 Score=12.79 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=10.9 Q ss_pred EEEEEEEEEEEEEEC Q ss_conf 864233410676609 Q gi|254780188|r 22 FIKNAFINGKMIFED 36 (36) Q Consensus 22 fiknafingkmifed 36 (36) =|...++||+.++++ T Consensus 33 Gi~~v~VnG~~v~~~ 47 (61) T d1m7ja2 33 GIHSVYVNGAAVWED 47 (61) T ss_dssp SEEEEEETTEEEEET T ss_pred EEEEEEECCEEEEEC T ss_conf 068999897899999 No 4 >d2nwaa1 b.122.1.13 (A:1-80) Hypothetical protein YtmB {Bacillus subtilis [TaxId: 1423]} Probab=5.71 E-value=53 Score=14.28 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=8.4 Q ss_pred EEEEEEECCCEE Q ss_conf 658997355044 Q gi|254780188|r 8 YKTIIVSKGKVE 19 (36) Q Consensus 8 yktiivskgkve 19 (36) ..|+||+|||-. T Consensus 7 ~nT~ivtkgke~ 18 (80) T d2nwaa1 7 FNTLIVTKGKEV 18 (80) T ss_dssp ECSSEECCSCCE T ss_pred EEEEEEECCCCC T ss_conf 889998568644 No 5 >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} Probab=5.23 E-value=1.2e+02 Score=12.57 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=10.6 Q ss_pred EEEEEEEEEEEEEC Q ss_conf 64233410676609 Q gi|254780188|r 23 IKNAFINGKMIFED 36 (36) Q Consensus 23 iknafingkmifed 36 (36) ++..++||+.+++| T Consensus 87 V~~V~V~Gk~Vv~d 100 (123) T d1p1ma1 87 VFATMVAGKWIYFD 100 (123) T ss_dssp CSEEEETTEEEEET T ss_pred CCEEEECCEEEEEC T ss_conf 63899989999999 No 6 >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.36 E-value=1.7e+02 Score=11.79 Aligned_cols=20 Identities=25% Similarity=0.795 Sum_probs=14.1 Q ss_pred EEEEEEEEE---CCCEEEEEEEE Q ss_conf 666589973---55044698642 Q gi|254780188|r 6 DWYKTIIVS---KGKVESFFIKN 25 (36) Q Consensus 6 dwyktiivs---kgkvesffikn 25 (36) .||...|++ .++++-+|+.- T Consensus 40 ~wyRa~V~~~~~~~~~~V~~vDy 62 (90) T d2hqxa1 40 EWYRARVEKVESPAKIHVFYIDY 62 (90) T ss_dssp CEEEEEEEEEEETTEEEEEETTT T ss_pred CEEEEEEEEECCCCEEEEEEEEC T ss_conf 89899999967999599999948 No 7 >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Probab=2.60 E-value=2.1e+02 Score=11.34 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=13.4 Q ss_pred EEEEEEEEE----CCCEEEEEEE Q ss_conf 666589973----5504469864 Q gi|254780188|r 6 DWYKTIIVS----KGKVESFFIK 24 (36) Q Consensus 6 dwyktiivs----kgkvesffik 24 (36) -||...|.+ .++++-+|+. T Consensus 19 ~wYRA~I~~v~~~~~~~~V~fvD 41 (59) T d1mhna_ 19 CIYPATIASIDFKRETCVVVYTG 41 (59) T ss_dssp CEEEEEEEEEETTTTEEEEEETT T ss_pred CEEEEEEEEECCCCCEEEEEEEE T ss_conf 89899999974889999999980 No 8 >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=2.42 E-value=2.2e+02 Score=11.21 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=13.0 Q ss_pred EEEEEEEEEC----CCEEEEEEE Q ss_conf 6665899735----504469864 Q gi|254780188|r 6 DWYKTIIVSK----GKVESFFIK 24 (36) Q Consensus 6 dwyktiivsk----gkvesffik 24 (36) .||...|.+. +.++-+|+. T Consensus 18 ~wYRA~I~~i~~~~~~~~V~fvD 40 (60) T d2d9ta1 18 KFYRAEVEALHSSGMTAVVKFTD 40 (60) T ss_dssp CEEEEEEEEECSSSSEEEEEETT T ss_pred CEEEEEEEEECCCCCEEEEEEEC T ss_conf 79999999982789999999987 No 9 >d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase {Escherichia coli [TaxId: 562]} Probab=2.28 E-value=2.3e+02 Score=11.11 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=0.0 Q ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEEEEEEE Q ss_conf 985666589973550446986423341067660 Q gi|254780188|r 3 LYLDWYKTIIVSKGKVESFFIKNAFINGKMIFE 35 (36) Q Consensus 3 lyldwyktiivskgkvesffiknafingkmife 35 (36) +-++-..+-+.+++..-.++--.++.||++++| T Consensus 124 ~~~~i~~~~i~~~~~~~~~~~g~~~Vdgk~v~e 156 (171) T d1mkaa_ 124 VTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYT 156 (171) T ss_dssp EEEEEEEEEEEESSSEEEEEEEEEEETTEEEEE T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEECCEEEEE T ss_conf 999999999874374899999999989999999 No 10 >d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]} Probab=2.27 E-value=2.4e+02 Score=11.11 Aligned_cols=7 Identities=71% Similarity=0.961 Sum_probs=0.0 Q ss_pred EEEEEEE Q ss_conf 4106766 Q gi|254780188|r 28 INGKMIF 34 (36) Q Consensus 28 ingkmif 34 (36) |+|||-| T Consensus 63 i~gK~yl 69 (73) T d1i27a_ 63 INDKMHF 69 (73) T ss_dssp ETTEEEE T ss_pred HCCEEEE T ss_conf 1676787 Done!