Query gi|254780189|ref|YP_003064602.1| hypothetical protein CLIBASIA_00370 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 54
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 14:34:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780189.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3424 consensus 23.6 34 0.00087 16.7 0.9 16 37-52 28-43 (132)
2 cd07625 BAR_Vps17p The Bin/Amp 16.2 1.1E+02 0.0028 14.3 2.4 21 15-35 31-51 (230)
3 TIGR01147 V_ATP_synt_G V-type 14.4 88 0.0022 14.8 1.3 21 17-37 1-21 (114)
4 pfam01050 MannoseP_isomer Mann 12.5 41 0.0011 16.3 -0.8 13 13-25 72-84 (151)
5 PHA00675 hypothetical protein 12.4 1.1E+02 0.0029 14.3 1.4 24 22-45 53-76 (78)
6 PRK09537 pylS pyrolysyl-tRNA s 10.0 70 0.0018 15.2 -0.3 19 18-36 58-76 (420)
7 PTZ00071 40S ribosomal protein 8.6 1.5E+02 0.0039 13.7 0.9 15 38-52 31-45 (133)
8 TIGR02367 PylS pyrrolysyl-tRNA 7.8 1.4E+02 0.0035 13.9 0.4 20 17-36 56-75 (453)
9 COG5177 Uncharacterized conser 6.2 1.2E+02 0.0032 14.1 -0.5 25 8-32 568-592 (769)
10 cd03816 GT1_ALG1_like This fam 5.4 2.6E+02 0.0067 12.6 0.8 14 11-24 12-25 (415)
No 1
>KOG3424 consensus
Probab=23.56 E-value=34 Score=16.69 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=12.4
Q ss_pred HHCCCCHHHHHHHHHH
Q ss_conf 1104110016777663
Q gi|254780189|r 37 TNQGRNTISKTEIQES 52 (54)
Q Consensus 37 tnqgrntiskteiqes 52 (54)
-..|+.+.||+||+|-
T Consensus 28 lHPG~a~vsK~EIrEK 43 (132)
T KOG3424 28 LHPGKANVSKTEIREK 43 (132)
T ss_pred ECCCCCCCCHHHHHHH
T ss_conf 5389899898999999
No 2
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=16.18 E-value=1.1e+02 Score=14.34 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 234566666678887776542
Q gi|254780189|r 15 HSMSMQRHSKYDKLCKAERRA 35 (54)
Q Consensus 15 hsmsmqrhskydklckaerra 35 (54)
+..+|.-++|+||+||++|--
T Consensus 31 y~~~~~~~~kl~k~~K~rr~L 51 (230)
T cd07625 31 YLTAQDLQEKLLRVSKARKQL 51 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999899999999999999998
No 3
>TIGR01147 V_ATP_synt_G V-type ATPase, G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation..
Probab=14.42 E-value=88 Score=14.78 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 456666667888777654211
Q gi|254780189|r 17 MSMQRHSKYDKLCKAERRATT 37 (54)
Q Consensus 17 msmqrhskydklckaerratt 37 (54)
||-|.+.---.|--||+||+-
T Consensus 1 Masq~~aGIq~LL~AEKrAae 21 (114)
T TIGR01147 1 MASQTQAGIQQLLQAEKRAAE 21 (114)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 952214459989999999989
No 4
>pfam01050 MannoseP_isomer Mannose-6-phosphate isomerase. All of the members of this Pfam entry belong to family 2 of the mannose-6-phosphate isomerases. The type II phosphomannose isomerases are bifunctional enzymes. This Pfam entry covers the isomerase domain. The guanosine diphospho-D-mannose pyrophosphorylase domain is in another Pfam entry, see pfam00483.
Probab=12.49 E-value=41 Score=16.30 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2123456666667
Q gi|254780189|r 13 IGHSMSMQRHSKY 25 (54)
Q Consensus 13 ighsmsmqrhsky 25 (54)
-|+++|+|+|.+-
T Consensus 72 Pg~~lSlQ~H~~R 84 (151)
T pfam01050 72 PGERLSLQMHHHR 84 (151)
T ss_pred CCCCCCCCCEEEE
T ss_conf 9986277204227
No 5
>PHA00675 hypothetical protein
Probab=12.39 E-value=1.1e+02 Score=14.26 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 666788877765421110411001
Q gi|254780189|r 22 HSKYDKLCKAERRATTNQGRNTIS 45 (54)
Q Consensus 22 hskydklckaerrattnqgrntis 45 (54)
.|.-.|.|+-|||+-|-..-.||.
T Consensus 53 kgtIAkICqYeRR~Qt~~rwK~i~ 76 (78)
T PHA00675 53 KGAIAKICRYERRGQFAVRVKTVP 76 (78)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 689999988988246742037610
No 6
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=9.99 E-value=70 Score=15.23 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 5666666788877765421
Q gi|254780189|r 18 SMQRHSKYDKLCKAERRAT 36 (54)
Q Consensus 18 smqrhskydklckaerrat 36 (54)
---||.||.|.||.-|-+.
T Consensus 58 ralrhhkyrk~ck~crvsd 76 (420)
T PRK09537 58 RALRHHKYRKTCKRCRVSD 76 (420)
T ss_pred HHHHHHHHHCCCCCCCCCH
T ss_conf 8876211104222257677
No 7
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=8.59 E-value=1.5e+02 Score=13.68 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=10.5
Q ss_pred HCCCCHHHHHHHHHH
Q ss_conf 104110016777663
Q gi|254780189|r 38 NQGRNTISKTEIQES 52 (54)
Q Consensus 38 nqgrntiskteiqes 52 (54)
..|+.++||+||.|-
T Consensus 31 HPg~~~vsK~eirek 45 (133)
T PTZ00071 31 HPGKGTVSKEDIKKR 45 (133)
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 499898699999999
No 8
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=7.77 E-value=1.4e+02 Score=13.88 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 45666666788877765421
Q gi|254780189|r 17 MSMQRHSKYDKLCKAERRAT 36 (54)
Q Consensus 17 msmqrhskydklckaerrat 36 (54)
...-||.||-|.||--|-..
T Consensus 56 ara~rhhkyrktCkrCrvsd 75 (453)
T TIGR02367 56 ARALRHHKYRKTCKRCRVSD 75 (453)
T ss_pred HHHHHHHHHHHHHCCCCCCH
T ss_conf 88776544432210044457
No 9
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=6.18 E-value=1.2e+02 Score=14.07 Aligned_cols=25 Identities=44% Similarity=0.583 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1123321234566666678887776
Q gi|254780189|r 8 IEGKKIGHSMSMQRHSKYDKLCKAE 32 (54)
Q Consensus 8 iegkkighsmsmqrhskydklckae 32 (54)
-|.|+.-|..|.|||+.|++-.+.+
T Consensus 568 yE~k~tV~nFs~~rh~eye~P~~s~ 592 (769)
T COG5177 568 YEDKKTVHNFSLQRHFEYEVPLKSE 592 (769)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 0121345542045543036777765
No 10
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=5.40 E-value=2.6e+02 Score=12.57 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 33212345666666
Q gi|254780189|r 11 KKIGHSMSMQRHSK 24 (54)
Q Consensus 11 kkighsmsmqrhsk 24 (54)
-.||||--||.|..
T Consensus 12 GDiGrSPRMqYHA~ 25 (415)
T cd03816 12 GDIGRSPRMQYHAL 25 (415)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 67789878899999
Done!