Query gi|254780189|ref|YP_003064602.1| hypothetical protein CLIBASIA_00370 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 54 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 06:33:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780189.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2o7s_A DHQ-SDH, bifunctional 4.5 3E+02 0.0089 12.0 0.9 21 7-27 19-39 (114) 2 >3fbt_A Chorismate mutase and 4.0 3.4E+02 0.01 11.8 1.1 23 7-29 9-31 (165) 3 >1j5w_A Glycyl-tRNA synthetase 3.2 4.1E+02 0.012 11.4 2.0 30 22-51 43-72 (99) 4 >1d5t_A Guanine nucleotide dis 3.1 2.3E+02 0.0068 12.5 -0.7 14 12-25 64-77 (98) 5 >1y37_A Fluoroacetate dehaloge 2.9 2.9E+02 0.0085 12.1 -0.3 36 13-52 169-204 (204) 6 >2gv9_A DNA polymerase; polyme 2.8 4.3E+02 0.013 11.3 0.5 20 29-48 28-47 (127) 7 >1rsg_A FMS1 protein; FAD bind 2.6 2.8E+02 0.0082 12.2 -0.8 17 26-42 31-47 (52) 8 >2vy1_A Protein leafy, leafy; 2.4 5.1E+02 0.015 10.9 1.6 14 24-37 32-45 (75) 9 >1w63_A Adapter-related protei 2.3 3.5E+02 0.01 11.7 -0.5 41 14-54 1-41 (99) 10 >1ih7_A DNA polymerase, GP43; 2.3 5.2E+02 0.015 10.9 0.3 19 29-47 46-64 (199) No 1 >>2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* (A:220-333) Probab=4.47 E-value=3e+02 Score=11.99 Aligned_cols=21 Identities=38% Similarity=0.350 Sum_probs=16.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 211233212345666666788 Q gi|254780189|r 7 SIEGKKIGHSMSMQRHSKYDK 27 (54) Q Consensus 7 siegkkighsmsmqrhskydk 27 (54) .+-|..|+||.|.+-|.+.-+ T Consensus 19 ~liG~pi~hS~SP~~hn~~f~ 39 (114) T 2o7s_A 19 GIIGKPVSHSKSPIVHNQAFK 39 (114) T ss_dssp EEEESSCTTCCHHHHHHHHHH T ss_pred EEECCCCCCCCCCHHHHHHHH T ss_conf 863477688898299999999 No 2 >>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} (A:1-119,A:237-282) Probab=3.99 E-value=3.4e+02 Score=11.75 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=17.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21123321234566666678887 Q gi|254780189|r 7 SIEGKKIGHSMSMQRHSKYDKLC 29 (54) Q Consensus 7 siegkkighsmsmqrhskydklc 29 (54) .+-|..|+||+|-+-|...-+-+ T Consensus 9 gliG~pi~hS~SP~iHN~~f~~~ 31 (165) T 3fbt_A 9 GLIGEKLGHSHSSYIHKLIFEKV 31 (165) T ss_dssp EEEESSCCCCHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCHHHHHHHHHHC T ss_conf 99867862020799999999986 No 3 >>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:200-298) Probab=3.21 E-value=4.1e+02 Score=11.38 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 666788877765421110411001677766 Q gi|254780189|r 22 HSKYDKLCKAERRATTNQGRNTISKTEIQE 51 (54) Q Consensus 22 hskydklckaerrattnqgrntiskteiqe 51 (54) ..-||.+-|+-.--..-..|..||-||-|. T Consensus 43 lPAYD~~lK~SH~FNLLDARGaISVtER~~ 72 (99) T 1j5w_A 43 LPAYDYILKCSHTFNLLDARGAISVSQRQT 72 (99) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 666999999988888876357875899999 No 4 >>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:123-220) Probab=3.10 E-value=2.3e+02 Score=12.54 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 32123456666667 Q gi|254780189|r 12 KIGHSMSMQRHSKY 25 (54) Q Consensus 12 kighsmsmqrhsky 25 (54) -|||.|.+.+.-.| T Consensus 64 FiGHA~AL~~dD~Y 77 (98) T 1d5t_A 64 FTGHALALYRTDDY 77 (98) T ss_dssp HHHHHTSCCSSSGG T ss_pred HHHHHHHHHCCCCC T ss_conf 88877774237873 No 5 >>1y37_A Fluoroacetate dehalogenase; hydrolase; 1.50A {Burkholderia SP} (A:1-129,A:230-304) Probab=2.93 E-value=2.9e+02 Score=12.10 Aligned_cols=36 Identities=25% Similarity=0.136 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 2123456666667888777654211104110016777663 Q gi|254780189|r 13 IGHSMSMQRHSKYDKLCKAERRATTNQGRNTISKTEIQES 52 (54) Q Consensus 13 ighsmsmqrhskydklckaerrattnqgrntiskteiqes 52 (54) -||-+..+.-. ..-++-+.--.++||-|.|+|-.|| T Consensus 169 ~gh~~~ee~p~----~~~~~~~~f~~~~~~~~~~~~~~~~ 204 (204) T 1y37_A 169 GGHFFVDRFPD----DTARILREFLSDARSGIHQTERRES 204 (204) T ss_dssp SCTTHHHHCHH----HHHHHHHHHHHHHHC---------- T ss_pred CCCCHHHHCHH----HHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 98803886999----9999999999864354687666779 No 6 >>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* (A:669-690,A:783-887) Probab=2.83 E-value=4.3e+02 Score=11.28 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=13.2 Q ss_pred HHHHHHHHHHCCCCHHHHHH Q ss_conf 77765421110411001677 Q gi|254780189|r 29 CKAERRATTNQGRNTISKTE 48 (54) Q Consensus 29 ckaerrattnqgrntiskte 48 (54) |..--...|-+||+.|.+|. T Consensus 28 Cl~IA~SVT~iGR~ML~~T~ 47 (127) T 2gv9_A 28 CLHVAATVTTIGREMLLATR 47 (127) T ss_dssp CHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 25888999999999999999 No 7 >>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* (A:64-94,A:180-200) Probab=2.57 E-value=2.8e+02 Score=12.17 Aligned_cols=17 Identities=47% Similarity=0.532 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 88877765421110411 Q gi|254780189|r 26 DKLCKAERRATTNQGRN 42 (54) Q Consensus 26 dklckaerrattnqgrn 42 (54) |||..|...--..|||| T Consensus 31 dkllsakdtyfghqgrn 47 (52) T 1rsg_A 31 DKLLSAKDTYFGHQGRN 47 (52) T ss_dssp CTTSBHHHHCCCCSSCC T ss_pred CHHHHCCCCCCCCCCCC T ss_conf 97751111000356753 No 8 >>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A (A:120-194) Probab=2.45 E-value=5.1e+02 Score=10.92 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 67888777654211 Q gi|254780189|r 24 KYDKLCKAERRATT 37 (54) Q Consensus 24 kydklckaerratt 37 (54) |...||.+||...+ T Consensus 32 klRqlCH~er~~~~ 45 (75) T 2vy1_A 32 KLRQLCHLERNNAV 45 (75) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCC T ss_conf 89999999871353 No 9 >>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} (A:1-99) Probab=2.33 E-value=3.5e+02 Score=11.72 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC Q ss_conf 12345666666788877765421110411001677766329 Q gi|254780189|r 14 GHSMSMQRHSKYDKLCKAERRATTNQGRNTISKTEIQESKQ 54 (54) Q Consensus 14 ghsmsmqrhskydklckaerrattnqgrntiskteiqeskq 54 (54) |-+|++.--.-+..+++.-|.+.+.+.-..+-..|+.+-++ T Consensus 1 ~s~~~~~~~~~l~~~I~~ir~~~s~~~E~~~i~~el~~ir~ 41 (99) T 1w63_A 1 GAGMSMPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRS 41 (99) T ss_dssp -----CCCCCCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 99787999754999999986599868899999999999999 No 10 >>1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase; HET: DNA GMP; 2.21A {Enterobacteria phage RB69} (A:385-426,A:576-732) Probab=2.28 E-value=5.2e+02 Score=10.88 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCCHHHHH Q ss_conf 7776542111041100167 Q gi|254780189|r 29 CKAERRATTNQGRNTISKT 47 (54) Q Consensus 29 ckaerrattnqgrntiskt 47 (54) |+.---+.|..||+.|..+ T Consensus 46 ~~~iA~sVT~~GR~~I~~a 64 (199) T 1ih7_A 46 DLRNATAITTFGQMALQWI 64 (199) T ss_dssp CHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 8888889999889999999 Done!