Query         gi|254780189|ref|YP_003064602.1| hypothetical protein CLIBASIA_00370 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 54
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Mon May 23 06:33:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780189.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2o7s_A DHQ-SDH, bifunctional    4.5   3E+02  0.0089   12.0   0.9   21    7-27     19-39  (114)
  2 >3fbt_A Chorismate mutase and    4.0 3.4E+02    0.01   11.8   1.1   23    7-29      9-31  (165)
  3 >1j5w_A Glycyl-tRNA synthetase   3.2 4.1E+02   0.012   11.4   2.0   30   22-51     43-72  (99)
  4 >1d5t_A Guanine nucleotide dis   3.1 2.3E+02  0.0068   12.5  -0.7   14   12-25     64-77  (98)
  5 >1y37_A Fluoroacetate dehaloge   2.9 2.9E+02  0.0085   12.1  -0.3   36   13-52    169-204 (204)
  6 >2gv9_A DNA polymerase; polyme   2.8 4.3E+02   0.013   11.3   0.5   20   29-48     28-47  (127)
  7 >1rsg_A FMS1 protein; FAD bind   2.6 2.8E+02  0.0082   12.2  -0.8   17   26-42     31-47  (52)
  8 >2vy1_A Protein leafy, leafy;    2.4 5.1E+02   0.015   10.9   1.6   14   24-37     32-45  (75)
  9 >1w63_A Adapter-related protei   2.3 3.5E+02    0.01   11.7  -0.5   41   14-54      1-41  (99)
 10 >1ih7_A DNA polymerase, GP43;    2.3 5.2E+02   0.015   10.9   0.3   19   29-47     46-64  (199)

No 1  
>>2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* (A:220-333)
Probab=4.47  E-value=3e+02  Score=11.99  Aligned_cols=21  Identities=38%  Similarity=0.350  Sum_probs=16.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             211233212345666666788
Q gi|254780189|r    7 SIEGKKIGHSMSMQRHSKYDK   27 (54)
Q Consensus         7 siegkkighsmsmqrhskydk   27 (54)
                      .+-|..|+||.|.+-|.+.-+
T Consensus        19 ~liG~pi~hS~SP~~hn~~f~   39 (114)
T 2o7s_A           19 GIIGKPVSHSKSPIVHNQAFK   39 (114)
T ss_dssp             EEEESSCTTCCHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCHHHHHHHH
T ss_conf             863477688898299999999


No 2  
>>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} (A:1-119,A:237-282)
Probab=3.99  E-value=3.4e+02  Score=11.75  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=17.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21123321234566666678887
Q gi|254780189|r    7 SIEGKKIGHSMSMQRHSKYDKLC   29 (54)
Q Consensus         7 siegkkighsmsmqrhskydklc   29 (54)
                      .+-|..|+||+|-+-|...-+-+
T Consensus         9 gliG~pi~hS~SP~iHN~~f~~~   31 (165)
T 3fbt_A            9 GLIGEKLGHSHSSYIHKLIFEKV   31 (165)
T ss_dssp             EEEESSCCCCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCHHHHHHHHHHC
T ss_conf             99867862020799999999986


No 3  
>>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:200-298)
Probab=3.21  E-value=4.1e+02  Score=11.38  Aligned_cols=30  Identities=23%  Similarity=0.257  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             666788877765421110411001677766
Q gi|254780189|r   22 HSKYDKLCKAERRATTNQGRNTISKTEIQE   51 (54)
Q Consensus        22 hskydklckaerrattnqgrntiskteiqe   51 (54)
                      ..-||.+-|+-.--..-..|..||-||-|.
T Consensus        43 lPAYD~~lK~SH~FNLLDARGaISVtER~~   72 (99)
T 1j5w_A           43 LPAYDYILKCSHTFNLLDARGAISVSQRQT   72 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             666999999988888876357875899999


No 4  
>>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:123-220)
Probab=3.10  E-value=2.3e+02  Score=12.54  Aligned_cols=14  Identities=29%  Similarity=0.667  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             32123456666667
Q gi|254780189|r   12 KIGHSMSMQRHSKY   25 (54)
Q Consensus        12 kighsmsmqrhsky   25 (54)
                      -|||.|.+.+.-.|
T Consensus        64 FiGHA~AL~~dD~Y   77 (98)
T 1d5t_A           64 FTGHALALYRTDDY   77 (98)
T ss_dssp             HHHHHTSCCSSSGG
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             88877774237873


No 5  
>>1y37_A Fluoroacetate dehalogenase; hydrolase; 1.50A {Burkholderia SP} (A:1-129,A:230-304)
Probab=2.93  E-value=2.9e+02  Score=12.10  Aligned_cols=36  Identities=25%  Similarity=0.136  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             2123456666667888777654211104110016777663
Q gi|254780189|r   13 IGHSMSMQRHSKYDKLCKAERRATTNQGRNTISKTEIQES   52 (54)
Q Consensus        13 ighsmsmqrhskydklckaerrattnqgrntiskteiqes   52 (54)
                      -||-+..+.-.    ..-++-+.--.++||-|.|+|-.||
T Consensus       169 ~gh~~~ee~p~----~~~~~~~~f~~~~~~~~~~~~~~~~  204 (204)
T 1y37_A          169 GGHFFVDRFPD----DTARILREFLSDARSGIHQTERRES  204 (204)
T ss_dssp             SCTTHHHHCHH----HHHHHHHHHHHHHHC----------
T ss_pred             CCCCHHHHCHH----HHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             98803886999----9999999999864354687666779


No 6  
>>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* (A:669-690,A:783-887)
Probab=2.83  E-value=4.3e+02  Score=11.28  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHH
Q ss_conf             77765421110411001677
Q gi|254780189|r   29 CKAERRATTNQGRNTISKTE   48 (54)
Q Consensus        29 ckaerrattnqgrntiskte   48 (54)
                      |..--...|-+||+.|.+|.
T Consensus        28 Cl~IA~SVT~iGR~ML~~T~   47 (127)
T 2gv9_A           28 CLHVAATVTTIGREMLLATR   47 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             25888999999999999999


No 7  
>>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* (A:64-94,A:180-200)
Probab=2.57  E-value=2.8e+02  Score=12.17  Aligned_cols=17  Identities=47%  Similarity=0.532  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             88877765421110411
Q gi|254780189|r   26 DKLCKAERRATTNQGRN   42 (54)
Q Consensus        26 dklckaerrattnqgrn   42 (54)
                      |||..|...--..||||
T Consensus        31 dkllsakdtyfghqgrn   47 (52)
T 1rsg_A           31 DKLLSAKDTYFGHQGRN   47 (52)
T ss_dssp             CTTSBHHHHCCCCSSCC
T ss_pred             CHHHHCCCCCCCCCCCC
T ss_conf             97751111000356753


No 8  
>>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A (A:120-194)
Probab=2.45  E-value=5.1e+02  Score=10.92  Aligned_cols=14  Identities=36%  Similarity=0.672  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             67888777654211
Q gi|254780189|r   24 KYDKLCKAERRATT   37 (54)
Q Consensus        24 kydklckaerratt   37 (54)
                      |...||.+||...+
T Consensus        32 klRqlCH~er~~~~   45 (75)
T 2vy1_A           32 KLRQLCHLERNNAV   45 (75)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             89999999871353


No 9  
>>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} (A:1-99)
Probab=2.33  E-value=3.5e+02  Score=11.72  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             12345666666788877765421110411001677766329
Q gi|254780189|r   14 GHSMSMQRHSKYDKLCKAERRATTNQGRNTISKTEIQESKQ   54 (54)
Q Consensus        14 ghsmsmqrhskydklckaerrattnqgrntiskteiqeskq   54 (54)
                      |-+|++.--.-+..+++.-|.+.+.+.-..+-..|+.+-++
T Consensus         1 ~s~~~~~~~~~l~~~I~~ir~~~s~~~E~~~i~~el~~ir~   41 (99)
T 1w63_A            1 GAGMSMPAPIRLRELIRTIRTARTQAEEREMIQKECAAIRS   41 (99)
T ss_dssp             -----CCCCCCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99787999754999999986599868899999999999999


No 10 
>>1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase; HET: DNA GMP; 2.21A {Enterobacteria phage RB69} (A:385-426,A:576-732)
Probab=2.28  E-value=5.2e+02  Score=10.88  Aligned_cols=19  Identities=16%  Similarity=0.034  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHCCCCHHHHH
Q ss_conf             7776542111041100167
Q gi|254780189|r   29 CKAERRATTNQGRNTISKT   47 (54)
Q Consensus        29 ckaerrattnqgrntiskt   47 (54)
                      |+.---+.|..||+.|..+
T Consensus        46 ~~~iA~sVT~~GR~~I~~a   64 (199)
T 1ih7_A           46 DLRNATAITTFGQMALQWI   64 (199)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             8888889999889999999


Done!