Query gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 463
No_of_seqs 247 out of 2892
Neff 5.4
Searched_HMMs 39220
Date Mon May 23 07:08:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780190.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00979 fumC_II fumarate hyd 100.0 0 0 1492.3 34.4 458 4-461 1-459 (459)
2 PRK12273 aspA aspartate ammoni 100.0 0 0 1359.8 44.0 462 1-463 2-465 (471)
3 PRK12425 fumarate hydratase; P 100.0 0 0 1359.3 43.6 460 4-463 2-461 (464)
4 PRK00485 fumC fumarate hydrata 100.0 0 0 1338.5 44.6 462 1-462 1-462 (462)
5 PRK13353 aspartate ammonia-lya 100.0 0 0 1330.3 45.1 462 1-463 1-463 (473)
6 COG0114 FumC Fumarase [Energy 100.0 0 0 1323.9 39.1 462 2-463 1-462 (462)
7 TIGR00839 aspA aspartate ammon 100.0 0 0 1320.8 29.1 457 5-462 1-460 (469)
8 cd01362 Fumarase_classII Class 100.0 0 0 1300.6 42.6 455 5-459 1-455 (455)
9 cd01357 Aspartatase Aspartase_ 100.0 0 0 1292.0 44.0 450 5-455 1-450 (450)
10 cd01596 Aspartatase_like Aspar 100.0 0 0 1259.7 43.3 450 5-455 1-450 (450)
11 COG1027 AspA Aspartate ammonia 100.0 0 0 1246.3 38.0 462 1-463 1-464 (471)
12 KOG1317 consensus 100.0 0 0 1166.5 29.7 459 3-463 27-487 (487)
13 cd01597 pCLME pCLME: prokaryot 100.0 0 0 650.7 36.0 405 21-461 5-425 (437)
14 pfam00206 Lyase_1 Lyase. 100.0 0 0 622.0 23.4 310 12-342 1-312 (312)
15 PRK09053 3-carboxy-cis,cis-muc 100.0 0 0 578.5 35.5 410 19-462 9-435 (452)
16 cd01359 Argininosuccinate_lyas 100.0 0 0 548.6 35.2 391 40-460 4-410 (435)
17 cd01334 Lyase_I Lyase class I 100.0 0 0 555.5 28.7 328 45-394 1-330 (330)
18 PRK08540 adenylosuccinate lyas 100.0 0 0 543.7 35.5 411 17-462 5-432 (449)
19 TIGR00838 argH argininosuccina 100.0 0 0 547.1 29.4 393 29-460 13-440 (469)
20 PRK00855 argininosuccinate lya 100.0 0 0 533.4 33.2 412 19-461 4-434 (459)
21 cd01595 Adenylsuccinate_lyase_ 100.0 0 0 523.1 32.4 364 41-432 7-380 (381)
22 PRK04833 argininosuccinate lya 100.0 0 0 509.5 30.7 398 26-461 12-432 (455)
23 PRK08937 adenylosuccinate lyas 100.0 0 0 487.7 34.9 390 22-461 5-413 (425)
24 PRK06390 adenylosuccinate lyas 100.0 0 0 479.8 34.2 409 17-461 5-429 (451)
25 PRK07380 adenylosuccinate lyas 100.0 0 0 481.6 32.2 385 41-461 16-420 (431)
26 PRK07492 adenylosuccinate lyas 100.0 0 0 479.9 31.6 384 41-461 16-422 (433)
27 PRK06705 argininosuccinate lya 100.0 0 0 473.8 32.7 385 43-461 36-447 (502)
28 COG0165 ArgH Argininosuccinate 100.0 0 0 470.0 33.2 402 18-460 7-432 (459)
29 PRK08470 adenylosuccinate lyas 100.0 0 0 470.5 31.9 377 41-461 16-431 (442)
30 PRK12308 bifunctional arginino 100.0 0 0 469.2 32.5 394 25-459 11-430 (614)
31 TIGR00928 purB adenylosuccinat 100.0 0 0 462.5 29.7 385 42-462 19-460 (469)
32 cd03302 Adenylsuccinate_lyase_ 100.0 0 0 451.0 32.7 381 41-461 16-435 (436)
33 COG0015 PurB Adenylosuccinate 100.0 0 0 447.0 34.6 392 21-461 4-426 (438)
34 cd01360 Adenylsuccinate_lyase_ 100.0 0 0 452.2 29.3 344 41-428 13-375 (387)
35 PRK02186 argininosuccinate lya 100.0 0 0 414.6 31.6 395 14-441 412-822 (892)
36 PRK06389 argininosuccinate lya 100.0 0 0 406.9 33.5 372 40-458 27-421 (434)
37 TIGR02426 protocat_pcaB 3-carb 100.0 0 0 395.1 24.9 314 41-391 17-351 (351)
38 PRK05975 3-carboxy-cis,cis-muc 100.0 0 0 385.6 28.3 322 21-391 14-345 (353)
39 KOG1316 consensus 100.0 0 0 373.9 26.3 393 28-458 19-432 (464)
40 cd01598 PurB PurB: PurB_like 100.0 0 0 360.4 25.8 386 42-461 8-424 (425)
41 PRK09285 adenylosuccinate lyas 100.0 0 0 341.1 28.1 302 126-461 115-446 (456)
42 cd01594 Lyase_I_like Lyase cla 100.0 7.8E-41 1.4E-45 293.0 21.5 214 106-382 16-229 (231)
43 KOG2700 consensus 100.0 1.3E-32 3.3E-37 238.0 20.9 379 47-462 34-449 (481)
44 pfam10415 FumaraseC_C Fumarase 99.5 8.6E-15 2.2E-19 118.8 6.1 55 408-462 1-55 (55)
45 pfam10397 ADSL_C Adenylosuccin 97.7 2.4E-05 6.1E-10 55.6 2.9 51 411-461 12-71 (81)
46 KOG2700 consensus 94.8 0.35 9E-06 27.7 9.7 40 171-211 219-259 (481)
47 pfam08328 ASL_C Adenylosuccina 73.2 4.7 0.00012 20.2 3.6 72 387-460 33-115 (115)
48 TIGR01584 citF citrate lyase, 61.9 2.7 6.9E-05 21.8 0.4 17 445-461 351-367 (496)
49 pfam05321 HHA Haemolysin expre 59.3 9.5 0.00024 18.1 2.9 33 63-95 21-57 (57)
50 pfam02024 Leptin Leptin. 58.6 11 0.00028 17.7 3.1 47 252-298 35-83 (146)
51 PRK04286 hypothetical protein; 54.7 9.3 0.00024 18.2 2.2 71 54-138 32-117 (294)
52 PRK10945 hemolysin expression- 51.5 13 0.00034 17.1 2.6 33 63-95 33-69 (72)
53 PRK10733 hflB ATP-dependent me 46.1 19 0.00048 16.1 2.7 29 434-462 573-601 (644)
54 pfam01527 Transposase_8 Transp 44.6 22 0.00057 15.7 4.1 32 422-454 13-44 (75)
55 COG1102 Cmk Cytidylate kinase 44.5 21 0.00055 15.8 2.7 37 225-269 3-39 (179)
56 TIGR01124 ilvA_2Cterm threonin 43.7 8.5 0.00022 18.5 0.6 31 171-205 25-55 (508)
57 TIGR00587 nfo apurinic endonuc 43.1 17 0.00045 16.4 2.1 121 161-304 147-283 (318)
58 COG3802 GguC Uncharacterized p 41.1 25 0.00064 15.3 3.0 28 158-191 114-141 (333)
59 PRK09857 hypothetical protein; 40.7 25 0.00065 15.3 5.0 34 419-453 257-290 (292)
60 pfam11802 CENP-K Centromere-as 39.3 27 0.00068 15.1 3.1 37 69-105 22-58 (273)
61 TIGR02492 flgK_ends flagellar 39.1 27 0.00069 15.1 5.2 67 196-263 166-232 (495)
62 TIGR01544 HAD-SF-IE HAD-superf 39.0 27 0.00068 15.2 2.5 25 197-221 118-142 (287)
63 COG2320 GrpB Uncharacterized c 37.9 28 0.00072 15.0 2.7 45 195-240 18-64 (185)
64 pfam04223 CitF Citrate lyase, 37.2 22 0.00057 15.7 1.9 20 168-187 212-231 (466)
65 TIGR02062 RNase_B exoribonucle 36.5 29 0.00075 14.8 3.0 23 232-254 419-442 (664)
66 COG2059 ChrA Chromate transpor 36.0 29 0.00075 14.8 2.4 10 221-230 16-25 (195)
67 TIGR00513 accA acetyl-CoA carb 35.3 30 0.00076 14.8 2.3 52 235-289 138-191 (329)
68 KOG1251 consensus 35.2 22 0.00055 15.7 1.6 34 240-273 129-162 (323)
69 PRK13018 cell division protein 33.4 33 0.00084 14.5 4.4 99 180-294 73-183 (387)
70 COG0783 Dps DNA-binding ferrit 32.7 34 0.00086 14.5 5.9 33 200-234 45-81 (156)
71 TIGR03029 EpsG chain length de 32.1 35 0.00088 14.4 4.8 16 61-76 11-26 (274)
72 pfam06755 DUF1219 Protein of u 31.8 32 0.0008 14.7 2.0 45 136-187 34-78 (109)
73 cd02854 Glycogen_branching_enz 31.0 35 0.00088 14.4 2.0 22 304-325 40-61 (99)
74 KOG0588 consensus 30.6 14 0.00036 17.0 -0.0 24 74-97 176-199 (786)
75 KOG3938 consensus 30.5 37 0.00094 14.2 3.4 14 392-405 290-303 (334)
76 cd00545 MCH Methenyltetrahydro 30.4 32 0.00081 14.6 1.8 25 420-444 243-272 (312)
77 cd02191 FtsZ FtsZ is a GTPase 29.7 38 0.00096 14.1 4.8 102 181-299 47-160 (303)
78 pfam01645 Glu_synthase Conserv 29.4 29 0.00074 14.9 1.4 57 24-80 36-92 (367)
79 TIGR02630 xylose_isom_A xylose 29.3 17 0.00043 16.4 0.2 111 77-231 26-140 (437)
80 PRK12319 acetyl-CoA carboxylas 28.9 39 0.001 14.0 2.6 46 172-219 91-136 (256)
81 pfam02289 MCH Cyclohydrolase ( 28.7 35 0.00088 14.4 1.7 17 428-444 256-272 (312)
82 PRK05724 acetyl-CoA carboxylas 28.4 40 0.001 14.0 2.9 24 237-260 131-155 (318)
83 TIGR01241 FtsH_fam ATP-depende 28.2 40 0.001 14.0 3.1 39 417-455 467-505 (505)
84 TIGR03120 one_C_mch methenylte 28.2 35 0.0009 14.3 1.7 17 428-444 256-272 (312)
85 COG3051 CitF Citrate lyase, al 28.0 36 0.00092 14.3 1.7 15 65-79 45-59 (513)
86 CHL00176 ftsH cell division pr 28.0 41 0.001 13.9 2.7 29 434-462 596-624 (631)
87 TIGR02869 spore_SleB spore cor 27.4 24 0.00062 15.4 0.8 16 19-34 34-49 (232)
88 PRK09956 hypothetical protein; 27.3 42 0.0011 13.8 4.9 35 418-453 272-306 (308)
89 PRK02264 N(5),N(10)-methenylte 27.2 39 0.00099 14.0 1.8 17 428-444 258-274 (318)
90 PRK08349 hypothetical protein; 26.3 28 0.00071 15.0 0.9 36 331-371 113-148 (198)
91 pfam12548 DUF3740 Sulfatase pr 26.2 44 0.0011 13.7 3.3 55 126-194 82-136 (144)
92 CHL00198 accA acetyl-CoA carbo 26.2 44 0.0011 13.7 2.8 23 238-260 136-159 (322)
93 TIGR02278 PaaN-DH phenylacetic 25.4 45 0.0011 13.6 3.1 65 31-99 156-233 (690)
94 TIGR00097 HMP-P_kinase phospho 24.7 46 0.0012 13.5 3.9 44 139-185 211-254 (264)
95 KOG2675 consensus 23.3 49 0.0013 13.4 2.7 14 283-296 276-289 (480)
96 PRK02910 light-independent pro 23.1 43 0.0011 13.8 1.3 89 193-286 165-263 (524)
97 TIGR01937 nqrB NADH:ubiquinone 21.7 51 0.0013 13.2 1.5 125 197-332 290-431 (508)
98 TIGR02408 ectoine_ThpD ectoine 20.7 55 0.0014 13.0 1.6 63 281-350 42-112 (278)
99 PTZ00333 triosephosphate isome 20.4 41 0.0011 13.9 0.8 71 174-250 119-191 (252)
No 1
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=100.00 E-value=0 Score=1492.30 Aligned_cols=458 Identities=66% Similarity=1.020 Sum_probs=456.7
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 602575587633863243217799887608778-8778999999999999999999998089998999999999999985
Q gi|254780190|r 4 TRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIG-EEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVIN 82 (463)
Q Consensus 4 ~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~-~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~ 82 (463)
||+|+||||+|+||+|+|||||||||.+||+|| .++||.++|+||+++|||||.||.+||.||.+++++|.+|||||++
T Consensus 1 ~R~E~DsmG~i~V~adkyWGAQT~RS~~nF~iG~~e~MP~~lI~Afa~lKk~aA~~N~~LG~L~~~k~~~I~~A~DeiL~ 80 (459)
T TIGR00979 1 FRIEKDSMGEIKVPADKYWGAQTQRSLENFKIGGKEKMPKELIRAFAILKKAAAIVNEDLGKLDAEKADAIAAAADEILA 80 (459)
T ss_pred CCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 96652346504402112323666898872566888778788999999999999999686279988899999998769873
Q ss_pred CCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87411265002202421001687305789999997323579864307446530125712344567899986633687899
Q gi|254780190|r 83 GKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLP 162 (463)
Q Consensus 83 g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~ 162 (463)
|+|+|||||.||||||||||||||||||||||++++||+.|++.+||||||||+||||||+||||||||++..+.++|+|
T Consensus 81 G~~~d~FPL~vWQTGSGTQsNMN~NEViANrA~~~~gG~~G~k~~iHPNDhVNkSQSSNDtFPTAMHIAAv~~~~~~LIP 160 (459)
T TIGR00979 81 GKFDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKKPIHPNDHVNKSQSSNDTFPTAMHIAAVLAIKEQLIP 160 (459)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87447798537867877410022589999999998477667888789876568887788876678999999999875316
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCC
Q ss_conf 99999999999987507864321440017600319999999999998228999997885300668870110454436355
Q gi|254780190|r 163 TLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGF 242 (463)
Q Consensus 163 ~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f 242 (463)
+|+.|.++|.+|+++|++++|+||||||||+|+|||||||||..+|++.++|+..+++.|+++.+||||||||+|+|++|
T Consensus 161 ~L~~L~~~l~~Ks~~F~~ivKIGRTHLqDAtPLTLGQEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGTAVGTGLN~~~~f 240 (459)
T TIGR00979 161 ALENLKKTLDEKSKEFADIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIEESLPHLYELALGGTAVGTGLNTHPGF 240 (459)
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHH
T ss_conf 79999999999999860872005644132445400245899999999999999999999999735773231566886667
Q ss_pred HHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 79999999986088507642078876124128998999998764388879999998277334721675068898756445
Q gi|254780190|r 243 AEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMP 322 (463)
Q Consensus 243 ~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP 322 (463)
+++|+++|+++|+.+|.++||+|+|+++||++++.||+|+.||.+|+|||||||||+||||||+|||.||++||||||||
T Consensus 241 ~~Kv~~~~~~~T~~~F~~ApNKF~ALa~HDAiv~ahGaL~~LA~sL~KIAnD~R~LgSGPRCGlGEl~~PENEPGSSIMP 320 (459)
T TIGR00979 241 DEKVAEEIAKFTGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFLPENEPGSSIMP 320 (459)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999997378998996167786445899986478999999887798778785078864200256777875787697
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHH
Q ss_conf 54562467887652001210123555322345766530023443224458999999999999998734900789999887
Q gi|254780190|r 323 GKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSL 402 (463)
Q Consensus 323 ~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l 402 (463)
|||||++||+++|||.||||||+||.+++++||||||||+|+|+||+|+|++||+|+|.+|.++|+.||+||++|+++++
T Consensus 321 GKVNPTQ~EalTMVC~QVmGNd~tI~~agS~GnFELNVFkPViIyNfLqS~~LLsDa~~SF~~hcv~Gi~pN~~ri~~~l 400 (459)
T TIGR00979 321 GKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPVIIYNFLQSVRLLSDAMESFREHCVVGIEPNKERIQQLL 400 (459)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 89871043588998887730024545332046531234525899879989999998999888640124502458999997
Q ss_pred HCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCC
Q ss_conf 43973662011055389999999999982999899999858999889998518898438
Q gi|254780190|r 403 NRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 403 ~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~ 461 (463)
++|+||||||+|+||||+|++|||+|+++|.||||+|++.|+|||+|||+++.||+|++
T Consensus 401 ~~SLMLVTALNPhiGYd~AakiAK~Ahk~GitLKeaAl~Lg~Lse~eFD~~V~PE~Mvg 459 (459)
T TIGR00979 401 ENSLMLVTALNPHIGYDNAAKIAKKAHKEGITLKEAALELGLLSEEEFDKWVVPEKMVG 459 (459)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCC
T ss_conf 52113345423545747899999999743977789997448978688278279862679
No 2
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=0 Score=1359.77 Aligned_cols=462 Identities=45% Similarity=0.706 Sum_probs=457.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9986025755876338632432177998876087788778--99999999999999999999808999899999999999
Q gi|254780190|r 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQ--PLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE 78 (463)
Q Consensus 1 m~~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~--~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ 78 (463)
||+||+|+|+|||++||+|+|||+|||||++||||||+++ ||+||+|+++||+|||++|.++|+||++++++|++|||
T Consensus 2 ~m~~RiE~DslG~v~vp~~~~yGaqTqRa~~NF~isg~~~~~~~~~I~A~~~iK~AaA~aN~~lg~L~~~~a~aI~~A~~ 81 (471)
T PRK12273 2 SMNTRIEKDLLGEREVPADAYYGIQTLRAVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAACD 81 (471)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98873102487660377767315989999977698898888778999999999999999999828999999999999999
Q ss_pred HHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99858741126500220242100168730578999999732357986430744653012571234456789998663368
Q gi|254780190|r 79 EVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVH 158 (463)
Q Consensus 79 ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~ 158 (463)
||++|+|+|||||||||||||||||||+||||||||+|++|+++|+|++|||||||||||||||+|||||||+++..+ +
T Consensus 82 ei~~G~~~~~Fpvdv~QtGsGTstNMNvNEVIAnrA~e~lg~~~G~~~~vHPNDhVN~~QSsND~~PTA~~ia~~~~~-~ 160 (471)
T PRK12273 82 EILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSL-R 160 (471)
T ss_pred HHHCCCCCCCCEEEHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH-H
T ss_conf 998498620340201027887666762899999999999388778888748325876324666632089999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCC
Q ss_conf 78999999999999998750786432144001760031999999999999822899999788530066887011045443
Q gi|254780190|r 159 RLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238 (463)
Q Consensus 159 ~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna 238 (463)
+|+|+|+.|+++|.+|+++|++++|+||||||||+|+||||||++|+++++|+++||+.++++++++|+||||||||+|+
T Consensus 161 ~L~pal~~L~~~l~~Ka~~f~~iiK~GRTHLqDA~PitlGQef~aya~~l~~~~~rl~~~~~~l~~l~lGGTAVGTGlna 240 (471)
T PRK12273 161 KLLDALEQLIEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALAEDIKRLEEAAELLREVNLGATAIGTGINA 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999999999999997323530520156653312077899999999999999999999987536875100467788
Q ss_pred CCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 63557999999998608850764207887612412899899999876438887999999827733472167506889875
Q gi|254780190|r 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGS 318 (463)
Q Consensus 239 ~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GS 318 (463)
|++|.+.++++|+++||++|++++|+|++++++|.++++|++|+.+|++|.|||||||||+||||||||||.||++||||
T Consensus 241 ~~~f~~~v~~~L~~~tgl~f~~a~n~f~a~~~~D~~v~~sg~Lk~lA~~L~KIAnDlRlL~SGPr~GlgEi~LPa~qpGS 320 (471)
T PRK12273 241 PPGYAELVVKKLAEITGLPLVPAEDLIEATQDCGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGS 320 (471)
T ss_pred CCHHHHHHHHHHHHHHCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCC
T ss_conf 82089999999999978996457889999728819999999999999999999988888706876675400378899987
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHH
Q ss_conf 64455456246788765200121012355532234576653002344322445899999999999999873490078999
Q gi|254780190|r 319 SIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENI 398 (463)
Q Consensus 319 SiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm 398 (463)
||||||||||+||+++|+|+||+|||.+|++|+++||||||||+|+|+||+|+|+++|++++.+|+++||+||++|++||
T Consensus 321 SIMPGKVNPv~~E~~~mv~~qViGnd~aIt~A~~~G~~ELNv~~PlIa~nll~Si~lL~~a~~~f~~~ci~Gi~~n~e~~ 400 (471)
T PRK12273 321 SIMPGKVNPVIPEVVNQVCFQVIGNDLTVTMAAEAGQLQLNVMEPVIAYALFESISILTNACRTLREKCIDGITANEERC 400 (471)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHH
T ss_conf 77899989678999999999997445999998545506765136099999999999999999999998756577789999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
Q ss_conf 98874397366201105538999999999998299989999985899988999851889843887
Q gi|254780190|r 399 QLSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 (463)
Q Consensus 399 ~~~l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P~ 463 (463)
++++++|+|++|+|+|+|||++|++|||+|+++|+++||++++.|+||++|||++|||++||+|.
T Consensus 401 ~~~l~~S~~lvTaL~p~IGYd~aa~iak~A~~~g~slre~~le~~~ls~~e~d~ildP~~mt~pg 465 (471)
T PRK12273 401 REYVENSIGIVTALNPYIGYENAAEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPG 465 (471)
T ss_pred HHHHHHCHHHHHHCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
T ss_conf 99997483247553450157999999999999299899999885999999999866999847999
No 3
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=0 Score=1359.26 Aligned_cols=460 Identities=55% Similarity=0.880 Sum_probs=457.2
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 60257558763386324321779988760877887789999999999999999999980899989999999999999858
Q gi|254780190|r 4 TRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVING 83 (463)
Q Consensus 4 ~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g 83 (463)
+|+|+|+||+++||+|+|||+|||||++|||||++++|++||+||++||||||+||.++|.||++++++|++|||||++|
T Consensus 2 tRiE~DslG~v~VP~d~~yG~qT~Ra~~NF~is~~~~p~~~I~A~~~vKkAaA~aN~~~G~L~~~~~~aI~~Acdei~~g 81 (464)
T PRK12425 2 SRIETDSLGPIEVPEDAYWGAQTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDG 81 (464)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 84001478762277655304989999977588888799999999999999999999980999999999999999999859
Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74112650022024210016873057899999973235798643074465301257123445678999866336878999
Q gi|254780190|r 84 KLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPT 163 (463)
Q Consensus 84 ~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~ 163 (463)
+|+|||||||||||||||||||+||||||||+|++|+++|+|++|||||||||||||||+|||||||+++..+.+.|+|+
T Consensus 82 ~~~~~Fpvdv~Q~GsGTstNMNvNEVIAnrA~e~lg~~~G~~~~vhPNDhVN~sQStND~~PTA~~ia~~~~l~~~L~pa 161 (464)
T PRK12425 82 QHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPA 161 (464)
T ss_pred CCCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97024887110079841200519999999999984777788887594322355456764787799999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCH
Q ss_conf 99999999999875078643214400176003199999999999982289999978853006688701104544363557
Q gi|254780190|r 164 LRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFA 243 (463)
Q Consensus 164 l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~ 243 (463)
|+.|+++|.+|+++|++++|+||||||||+|+||||+|++|+.+++|+++||+.+.+++++++|||||||||+|+|++|+
T Consensus 162 l~~L~~~l~~Ka~ef~~iiK~GRThLqDAvP~tlGQef~~~a~~l~~~~~rl~~~~~~l~~l~lGgTAVGTGina~~~f~ 241 (464)
T PRK12425 162 IAELSSGLAELSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVYELAQGGTAVGTGLNAPKGFA 241 (464)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999998613301263404556736378899999999999999999999999985277621146888857699
Q ss_pred HHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999999860885076420788761241289989999987643888799999982773347216750688987564455
Q gi|254780190|r 244 EKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPG 323 (463)
Q Consensus 244 ~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~ 323 (463)
+.++++|+++||++|++++|+|++++++|.++++|++|+.+|++|+|||||||||+|||||||+||.||++|||||||||
T Consensus 242 ~~~~~~L~~~tgl~~~~a~n~~~a~~~~d~~v~~sg~Lk~lA~~L~KIanDlRlL~SGPr~GlgEi~LP~~qpGSSIMPG 321 (464)
T PRK12425 242 EAIAAELAALSGLPFVTAPNKFAALAGHEPLTSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPANEPGSSIMPG 321 (464)
T ss_pred HHHHHHHHHHHCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999974999634787999971786899999999999999999998877763786567651248999998777899
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHH
Q ss_conf 45624678876520012101235553223457665300234432244589999999999999987349007899998874
Q gi|254780190|r 324 KVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLN 403 (463)
Q Consensus 324 K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~ 403 (463)
|||||+||++.|+|+||+|||++|++|+++||||||+|+|+|+||+|+|+++|++++.+|+++||+||++|++||+++++
T Consensus 322 KVNPvi~E~v~qv~~qViGnd~tit~a~~~Gq~eLNv~~Plia~nll~Si~lL~~a~~~f~~~ci~Gi~~N~e~~~~~~~ 401 (464)
T PRK12425 322 KVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFNQHCVAGLEPDAEQMAAHLE 401 (464)
T ss_pred CCCCHHHHHHHHCCEEEECCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 87988888865274154547299998776044576420278887436799999999999999987628888999999998
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
Q ss_conf 397366201105538999999999998299989999985899988999851889843887
Q gi|254780190|r 404 RSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 (463)
Q Consensus 404 ~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P~ 463 (463)
+|+|++|+|+|+|||++|++|||+|+++|+++||++++.|+||++|||++|||++||+|-
T Consensus 402 ~S~~lvTaL~P~IGY~~aa~Iak~A~~~g~sl~e~~le~g~ls~ee~d~il~P~~m~~pg 461 (464)
T PRK12425 402 RGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLREAALELGYLTEEQFDQWVRPENMLEAG 461 (464)
T ss_pred HCHHHHHHCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
T ss_conf 475688760340166999999999999399899999885999999999867999846899
No 4
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=0 Score=1338.50 Aligned_cols=462 Identities=65% Similarity=0.998 Sum_probs=459.8
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99860257558763386324321779988760877887789999999999999999999980899989999999999999
Q gi|254780190|r 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEV 80 (463)
Q Consensus 1 m~~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei 80 (463)
||+||+|+|+||+++||+|+|||+|||||++||||||.++|++||+|+++||||||+||.++|+||++++++|++|||||
T Consensus 1 m~~~R~E~D~lG~~~vp~~a~yG~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~g~L~~~~a~aI~~A~~ei 80 (462)
T PRK00485 1 MMETRIEKDSMGEIEVPADALWGAQTQRSLENFPIGGERMPRELIRALALIKKAAAQVNAELGLLDAEKADAIVAAADEV 80 (462)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99860110478760277756315989999967298888899999999999999999999984999999999999999999
Q ss_pred HCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85874112650022024210016873057899999973235798643074465301257123445678999866336878
Q gi|254780190|r 81 INGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRL 160 (463)
Q Consensus 81 ~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L 160 (463)
++|+|+|||||||||||||||||||+||||||||+|++|+++|+|.+||||||||+||||||+|||||||+++..+.+.|
T Consensus 81 ~~g~~~~~F~vdv~Q~GsGTstNMN~NEVIAn~A~e~lg~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia~~~~~~~~L 160 (462)
T PRK00485 81 LAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALAIVEHL 160 (462)
T ss_pred HCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 84995014412111178875233519999999999984877788887693001001236676531699999999999989
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCC
Q ss_conf 99999999999999875078643214400176003199999999999982289999978853006688701104544363
Q gi|254780190|r 161 LPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 (463)
Q Consensus 161 ~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~ 240 (463)
+|+|+.|+++|.+|+++|++++|+||||||||+|+||||+|++|++++.|+++||+.++++++++||||||||||+|+++
T Consensus 161 ~~al~~L~~~l~~Ka~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~Rl~~~~~~l~~l~lGGtAvGTGlna~~ 240 (462)
T PRK00485 161 LPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHP 240 (462)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999999999998545620052115437551179999999999999999999999999987437753237888881
Q ss_pred CCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
Q ss_conf 55799999999860885076420788761241289989999987643888799999982773347216750688987564
Q gi|254780190|r 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSI 320 (463)
Q Consensus 241 ~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSi 320 (463)
+|+..++++|+++||++|++++|+|+++++||.+++++++|+.+|++|+|||+|||||+||||+|||||.||+.||||||
T Consensus 241 ~f~~~v~~~L~~~tgl~~~~a~n~~~a~~~~D~~~e~~~~L~~lA~~L~KianDlRll~SGPr~glgEi~lPa~q~GSSI 320 (462)
T PRK00485 241 GFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPENEPGSSI 320 (462)
T ss_pred HHHHHHHHHHHHHHCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
T ss_conf 05899999999985999712687899985882999999999999999999999999972687668414547999998787
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHH
Q ss_conf 45545624678876520012101235553223457665300234432244589999999999999987349007899998
Q gi|254780190|r 321 MPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQL 400 (463)
Q Consensus 321 MP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~ 400 (463)
||||||||+||+++|+|+||+|||.||++|+++||||||+|+|+|+||+|+|+++|++++..|+++||+||+||+|||++
T Consensus 321 MPgKvNPvi~E~v~~v~~qV~Gnd~tv~~A~~~G~lELNv~~Pli~~~ll~si~lL~~a~~~f~~~cI~Gi~vn~e~~~~ 400 (462)
T PRK00485 321 MPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNEERIKE 400 (462)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHH
T ss_conf 89988977899999845764075799999875133776134628886157699999999999999987638878999999
Q ss_pred HHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCC
Q ss_conf 87439736620110553899999999999829998999998589998899985188984388
Q gi|254780190|r 401 SLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 401 ~l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P 462 (463)
++++|+|++|+|+|+|||++|++|+|+|+++|++|||++++.+++|++|+|++|||++||+|
T Consensus 401 ~l~~S~~l~TaL~p~iGY~~aa~iak~A~~~g~~lrev~le~~~ls~eeld~lldP~~mt~P 462 (462)
T PRK00485 401 LLERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLSEEEFDRWVDPEKMTGP 462 (462)
T ss_pred HHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHCCCC
T ss_conf 99757447987042764999999999999959989999988599999999986699861898
No 5
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=0 Score=1330.33 Aligned_cols=462 Identities=44% Similarity=0.710 Sum_probs=456.9
Q ss_pred CC-CCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99-86025755876338632432177998876087788778999999999999999999998089998999999999999
Q gi|254780190|r 1 MT-NTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEE 79 (463)
Q Consensus 1 m~-~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~e 79 (463)
|+ +||+|+|+||+++||+|+|||+|||||++|||||+.++|++||+||++||||||+||.++|+||++++++|++||||
T Consensus 1 m~~~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nF~i~~~~~~~~~I~a~~~iK~aaA~~N~~~g~l~~~~~~aI~~A~~e 80 (473)
T PRK13353 1 VNKNVRIEKDFLGEKEVPADAYYGIQTLRAVENFPITGYKIHEELIRAFAIVKKAAALANMDLGRLERNKAGAIVEAADE 80 (473)
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99885321347776327775631498999997749888889999999999999999999998289999999999999999
Q ss_pred HHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98587411265002202421001687305789999997323579864307446530125712344567899986633687
Q gi|254780190|r 80 VINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHR 159 (463)
Q Consensus 80 i~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~ 159 (463)
|++|+|+|||||||||||||||||||+||||||||+|++|+++|+|++|||||||||||||||+|||||||+++..+ ++
T Consensus 81 i~~g~~~~~Fpvdv~Q~GsGTstNMN~NEVian~a~e~lg~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia~~~~~-~~ 159 (473)
T PRK13353 81 ILDGKLHDQFIVDPIQGGAGTSMNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIATLNLL-EG 159 (473)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HH
T ss_conf 98599712588754117986535340999999999999478778888749764333434576367679999999999-99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC
Q ss_conf 89999999999999987507864321440017600319999999999998228999997885300668870110454436
Q gi|254780190|r 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTP 239 (463)
Q Consensus 160 L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~ 239 (463)
|+|+|+.|+++|.+||++|++++|+||||||||+|+||||+|++|+++++|+++||++++++++++||||||||||+|++
T Consensus 160 L~~~l~~L~~~L~~KA~e~~~ivkiGRTHlQdAvPiTlGqef~~~a~~l~r~~~Rl~~~~~~l~~l~lGGTAVGTG~n~~ 239 (473)
T PRK13353 160 LLQAMGALHDVFELKAEEFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSREHLYEVNLGATAVGTGLNAD 239 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999999999999874112125223645534127999999999999999999999999887447870126799998
Q ss_pred CCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 35579999999986088507642078876124128998999998764388879999998277334721675068898756
Q gi|254780190|r 240 VGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSS 319 (463)
Q Consensus 240 ~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSS 319 (463)
++|.+.++++|+++||++|++++|+|++++++|.+++++++|+.+|++|+|||+|||||+|||||||+||.||++|||||
T Consensus 240 ~~~~~~v~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDiRlL~SGPr~GlgEi~lPa~Q~GSS 319 (473)
T PRK13353 240 PEYIEAVVKHLAAITGLPLVGAEDLVDATQNTDAYVEVSAALKVCAMNLSKIANDLRLLASGPRTGLGEINLPAVQPGSS 319 (473)
T ss_pred CHHHHHHHHHHHHHHCCCCEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
T ss_conf 26999999989987199962478889999675899999999999999999999999997578655601345699989588
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHH
Q ss_conf 44554562467887652001210123555322345766530023443224458999999999999998734900789999
Q gi|254780190|r 320 IMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQ 399 (463)
Q Consensus 320 iMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~ 399 (463)
|||||||||+||+++|+|+||+|||.+|++++++||||||+|+|+|+||+|+|+++|++++.+|+++||+||++|+++|+
T Consensus 320 IMPgKvNPv~~E~v~~va~qV~Gnd~ti~~a~~~G~leLNv~~Pvi~~~ll~si~lL~~a~~~f~~~ci~Gi~~n~e~~~ 399 (473)
T PRK13353 320 IMPGKVNPVMPEVINQIAFQVIGNDHTICLAAEAGQLELNVMEPVIAFNLLQSISILTNGFRAFTDNCVKGIEANEERCK 399 (473)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHH
T ss_conf 88988697799999999999965186766524255456523540789999999999999999999998845888899999
Q ss_pred HHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
Q ss_conf 8874397366201105538999999999998299989999985899988999851889843887
Q gi|254780190|r 400 LSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 (463)
Q Consensus 400 ~~l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P~ 463 (463)
+++++|+|++|+|+|+|||++|++|||+|+++|++|||++++.+++|++|||++|||++||+|.
T Consensus 400 ~~l~~S~~LvTaL~p~iGY~~aa~iak~A~~~g~slre~~le~~~lseeeld~lldP~~m~~pg 463 (473)
T PRK13353 400 EYVEKSVGIITALNPHIGYEAAARVAKEAIATGQSVRELCLENGVLTEEELDLILDPFEMTHPG 463 (473)
T ss_pred HHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
T ss_conf 9998480517660526639999999999999499899999884999999999867999847998
No 6
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=0 Score=1323.87 Aligned_cols=462 Identities=64% Similarity=0.999 Sum_probs=459.4
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 98602575587633863243217799887608778877899999999999999999999808999899999999999998
Q gi|254780190|r 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVI 81 (463)
Q Consensus 2 ~~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~ 81 (463)
++||+|+|+|||++||+|+|||+|||||++||+||+++||.++||||+++|||||++|.++|.||++++++|++|||||+
T Consensus 1 ~~~R~E~Dt~G~i~Vpad~~wgAQTqRs~~nF~ig~~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev~ 80 (462)
T COG0114 1 MTYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGGEKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVL 80 (462)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 97433346676403647888999999998637865332849999999999999999889827999899999999999997
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58741126500220242100168730578999999732357986430744653012571234456789998663368789
Q gi|254780190|r 82 NGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLL 161 (463)
Q Consensus 82 ~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~ 161 (463)
+|+|||||||||||||||||+|||+||||||||+|++|+++|++.+|||||||||||||||+|||||||+++.++.++|+
T Consensus 81 ~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIAnrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~Li 160 (462)
T COG0114 81 AGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLI 160 (462)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 58666778768875599863446289999999999837545778887998667765656762036999999999998757
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCC
Q ss_conf 99999999999998750786432144001760031999999999999822899999788530066887011045443635
Q gi|254780190|r 162 PTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 (463)
Q Consensus 162 ~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~ 241 (463)
|+|+.|+++|.+|+++|++++|+||||||||+|+||||||++|+.++.++++|++.+++.++++++||||||||+|+||+
T Consensus 161 PaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGlNa~p~ 240 (462)
T COG0114 161 PALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHPE 240 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999999999998645532731034457632443567899999999999999989999870577230467689934
Q ss_pred CHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 57999999998608850764207887612412899899999876438887999999827733472167506889875644
Q gi|254780190|r 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIM 321 (463)
Q Consensus 242 f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiM 321 (463)
|+++++++|+++||++|++++|+|++++++|.++++||+|+.+|++|+|||||||||+||||||+|||.||++|||||||
T Consensus 241 f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPenePGSSIM 320 (462)
T COG0114 241 FGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEPGSSIM 320 (462)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999758975048847887650068999867899999999999888878706887775421057789976678
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHH
Q ss_conf 55456246788765200121012355532234576653002344322445899999999999999873490078999988
Q gi|254780190|r 322 PGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLS 401 (463)
Q Consensus 322 P~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~ 401 (463)
||||||++||+++|+|.||+|||.+|.+|+++|+||||||+|+|+||+|+|+++|++++.+|+++|+.||++|++||+++
T Consensus 321 PGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~ 400 (462)
T COG0114 321 PGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKEL 400 (462)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99989427999999999997555888875405742200102899999999999999999999987661351388999999
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
Q ss_conf 74397366201105538999999999998299989999985899988999851889843887
Q gi|254780190|r 402 LNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 (463)
Q Consensus 402 l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P~ 463 (463)
+++|+||||+|+|+||||+|++|||+|+++|+||||++++.|++|++|||+++||++|++|.
T Consensus 401 l~~SlmLVTaLnp~IGYdkAa~IAK~A~keg~tlreaa~~~G~lte~efd~~v~Pe~mv~~~ 462 (462)
T COG0114 401 LERSLMLVTALNPHIGYDKAAKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462 (462)
T ss_pred HHHCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
T ss_conf 86170578860540043899999999987798299999883888999999863998826899
No 7
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=100.00 E-value=0 Score=1320.84 Aligned_cols=457 Identities=43% Similarity=0.691 Sum_probs=454.2
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 0257558763386324321779988760877887789--99999999999999999998089998999999999999985
Q gi|254780190|r 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQP--LVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVIN 82 (463)
Q Consensus 5 R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~--~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~ 82 (463)
|+|+|.||+.+||+|+|||+||.||.|||+||+.++. |+||++|++||||||+||.++|.|+++.+.||++|||||++
T Consensus 1 R~E~D~lG~~~i~a~vYYGi~TLRA~ENF~Itn~ki~~~pefi~~~~~VKKAaaLAN~~l~~i~~~~~~AIv~AcDe~l~ 80 (469)
T TIGR00839 1 RIEKDFLGEREIPADVYYGIQTLRASENFFITNDKISDVPEFIRGLAMVKKAAALANVELGLIPEKIAQAIVAACDEILE 80 (469)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96754577602631000021343332030336861136078999999999999875588743088999999999999985
Q ss_pred -CCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -8741126500220242100168730578999999732357986430744653012571234456789998663368789
Q gi|254780190|r 83 -GKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLL 161 (463)
Q Consensus 83 -g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~ 161 (463)
|||.||||+|++|||||||+|||+||||||+|+|++|+++|+|.++|||||||+||||||+||||+||+++..+ .+|+
T Consensus 81 ~GK~~DQFivD~~QGGAGTS~NMN~NEViaN~ALE~mGH~KGeY~~~~PndHVN~sQStNDayPta~~Ia~y~~L-~kL~ 159 (469)
T TIGR00839 81 TGKCHDQFIVDVIQGGAGTSVNMNTNEVIANLALEIMGHKKGEYQFLNPNDHVNRSQSTNDAYPTALRIAVYKSL-EKLV 159 (469)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHH
T ss_conf 687100222443338876542230678999988876255146621208865102246666644017899999999-9999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCC
Q ss_conf 99999999999998750786432144001760031999999999999822899999788530066887011045443635
Q gi|254780190|r 162 PTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 (463)
Q Consensus 162 ~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~ 241 (463)
..++.|+++|..||+||.+++|+||||||||+|+|+||||.+|+-.|+|+++|++++++.+++++|||||||||+|+|++
T Consensus 160 ~~~~~l~~~F~~KA~EF~~viKMGRTqLQDAVPmtlGQEF~ay~~~l~~di~~~~~~~~~l~EvNlGaTAiGTGlN~~~~ 239 (469)
T TIGR00839 160 DTMEDLRDAFKQKAKEFASVIKMGRTQLQDAVPMTLGQEFEAYALLLERDIKNIKRTRQLLLEVNLGATAIGTGLNTPPE 239 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHH
T ss_conf 99999999998888998888621675454532355560489999999999999999987787763475102157787711
Q ss_pred CHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 57999999998608850764207887612412899899999876438887999999827733472167506889875644
Q gi|254780190|r 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIM 321 (463)
Q Consensus 242 f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiM 321 (463)
|...++++|+++||+||++|+|+++|+++.|+++++|++||++++.|+||||||||||||||+|+.||.||+.|||||||
T Consensus 240 Y~~lvvK~laevtG~p~V~A~~LieAT~~tgAYv~V~g~LKr~avklSKvcNDLRLlsSGPRAGL~EInLP~~QpGSSIM 319 (469)
T TIGR00839 240 YIKLVVKKLAEVTGLPLVPAENLIEATQDTGAYVEVSGALKRIAVKLSKVCNDLRLLSSGPRAGLNEINLPELQPGSSIM 319 (469)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 38999887641168864252357775338996266418899999986457656776405775440005764447788437
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHH
Q ss_conf 55456246788765200121012355532234576653002344322445899999999999999873490078999988
Q gi|254780190|r 322 PGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLS 401 (463)
Q Consensus 322 P~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~ 401 (463)
|+|||||+||+|+|+||+|||||.||++|+++||||||||+|+|+|++|+|+.+|++|+.+|+++||+||++|+++|+.+
T Consensus 320 PgKVNPV~pEvvNQvcF~VIGND~tv~lA~EaGQLqLNVmEPVi~~~lf~S~~Il~na~~~l~~kC~~GItaN~~~c~~Y 399 (469)
T TIGR00839 320 PGKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQALFESISILTNAIENLTDKCVEGITANEKICEDY 399 (469)
T ss_pred CCCCCCCHHHHHHHHHCEEECCCHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 87778721432520420100562588886113510120000689999999999998999988864203106768987401
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCC
Q ss_conf 7439736620110553899999999999829998999998589998899985188984388
Q gi|254780190|r 402 LNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 402 l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P 462 (463)
+.+|.+++|+|+|+|||++++-|+|+|.++|+++||+++++++||++|||.+|+|++|+.|
T Consensus 400 V~nSiGivT~lNPhiGy~~~~~iak~a~~tg~svrd~~Le~~~LTee~LDdIl~~~nl~~P 460 (469)
T TIGR00839 400 VFNSIGIVTALNPHIGYENGALIAKEAAKTGKSVRDVVLEKGLLTEEELDDILSPENLLKP 460 (469)
T ss_pred HHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHCCCCHHHHCCH
T ss_conf 0011102010142014223779999997438833023222455675541010382651271
No 8
>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=1300.59 Aligned_cols=455 Identities=66% Similarity=1.016 Sum_probs=452.5
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02575587633863243217799887608778877899999999999999999999808999899999999999998587
Q gi|254780190|r 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGK 84 (463)
Q Consensus 5 R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~ 84 (463)
|+|+|+||+++||+|+|||+|||||++||||||.++|++||+|+++||||||+||.++|+||++++++|++|||||++|+
T Consensus 1 R~E~D~lG~~~vp~~~~yG~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~G~L~~~~~~aI~~A~~ei~~g~ 80 (455)
T cd01362 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGK 80 (455)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98607887712777563269999999674988988999999999999999999999859999999999999999998499
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41126500220242100168730578999999732357986430744653012571234456789998663368789999
Q gi|254780190|r 85 LDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 (463)
Q Consensus 85 ~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l 164 (463)
|+||||||+||||||||||||+||||||||+|++|+++|+|.+|||||||||||||||+||||+||+++..+.+.|+|+|
T Consensus 81 ~~~~F~vd~~Q~GaGTstNMN~NEViAn~A~e~~g~~~g~~~~vhPndhVN~~QStND~~PTA~~ia~~~~l~~~L~~~l 160 (455)
T cd01362 81 LDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPAL 160 (455)
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 71351452000688763324099999999999847667888876930010023466764227999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHH
Q ss_conf 99999999998750786432144001760031999999999999822899999788530066887011045443635579
Q gi|254780190|r 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244 (463)
Q Consensus 165 ~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~ 244 (463)
+.|+++|.+||++|++++|+||||||||+|+||||||++|+++|.|+++||+.++++++++||||||||||+|++++|++
T Consensus 161 ~~L~~~L~~Ka~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~RL~~a~~~l~~~~lGGtAvGTG~n~~~~f~~ 240 (455)
T cd01362 161 KHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGFAE 240 (455)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999984477400541363476600899999999989999999999999999860577443478788812679
Q ss_pred HHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99999998608850764207887612412899899999876438887999999827733472167506889875644554
Q gi|254780190|r 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGK 324 (463)
Q Consensus 245 ~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K 324 (463)
.++++|+++||++|++++|+|+++++||.+++++++|+.+|++|+|||+|||||+||||+||+||.||++||||||||||
T Consensus 241 ~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP~~q~GSSIMPgK 320 (455)
T cd01362 241 KVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPENEPGSSIMPGK 320 (455)
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 99999988629997116878999848709999999999999999999999999827765684355479999977878998
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHC
Q ss_conf 56246788765200121012355532234576653002344322445899999999999999873490078999988743
Q gi|254780190|r 325 VNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 (463)
Q Consensus 325 ~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~ 404 (463)
||||+||+++|+|+||+|||.+|++++++||||||+|+|+|+||+|+|+++|++++..|+++||+||+||+++|++++++
T Consensus 321 vNPv~~E~v~~v~~~ViGnd~ti~~a~~~G~~ELNv~~Plia~~ll~si~lL~~~~~~f~~~~i~gi~vn~e~~~~~l~~ 400 (455)
T cd01362 321 VNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLER 400 (455)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 79889999999999996659999986635305664228389998888999999999999999876588889999999985
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHH
Q ss_conf 9736620110553899999999999829998999998589998899985188984
Q gi|254780190|r 405 SLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKM 459 (463)
Q Consensus 405 s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~m 459 (463)
|+|++|+|+|+|||++|++|+|+|+++|++|||++++.++||++|+|++|||++|
T Consensus 401 S~~l~TaL~p~iGY~~aa~iak~A~~~g~slrev~le~~~ls~eeld~lldP~~m 455 (455)
T cd01362 401 SLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf 7438988323763999999999999939989999988599999999986592129
No 9
>cd01357 Aspartatase Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=0 Score=1291.96 Aligned_cols=450 Identities=47% Similarity=0.727 Sum_probs=446.6
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02575587633863243217799887608778877899999999999999999999808999899999999999998587
Q gi|254780190|r 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGK 84 (463)
Q Consensus 5 R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~ 84 (463)
|||+|+||+|+||+|+|||+|||||++||||||+++|++||+||++||||||+||.++|+||++++++|++|||||++|+
T Consensus 1 R~E~DslG~v~vp~~~~yGaqT~Ra~~nF~i~~~~~~~~~i~a~~~vK~aaA~aN~~~g~l~~~~~~aI~~a~~ei~~g~ 80 (450)
T cd01357 1 RIEHDLLGEREVPADAYYGIQTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGK 80 (450)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98607787723786553038899999775988888999999999999999999999809999999999999999998599
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41126500220242100168730578999999732357986430744653012571234456789998663368789999
Q gi|254780190|r 85 LDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 (463)
Q Consensus 85 ~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l 164 (463)
|+|||||||||||||||||||+||||||||+|++|+++|+|.+|||||||||||||||+|||||||+++..+ +.|+|+|
T Consensus 81 ~~d~Fp~~v~QtGsGTstNMN~NEVIan~A~~~~g~~~g~~~~vhPnDhVN~~QSsND~~PTA~~ia~~~~~-~~L~pal 159 (450)
T cd01357 81 LHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLL-RKLLDAL 159 (450)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 754688633107986535440899999999999577778888769532235656776478789999999999-9999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHH
Q ss_conf 99999999998750786432144001760031999999999999822899999788530066887011045443635579
Q gi|254780190|r 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244 (463)
Q Consensus 165 ~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~ 244 (463)
+.|+++|.+||++|++++|+||||||||+|+||||+|++|+++++|+++||+.++++++++||||||||||+|++++|++
T Consensus 160 ~~l~~~L~~Ka~e~~~vik~GRTHLQdA~PiTlGq~f~~~~~~l~r~~~Rl~~~~~rl~~l~lGGtAvGTG~na~~~~~~ 239 (450)
T cd01357 160 AALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGYIE 239 (450)
T ss_pred HHHHHHHHHHHHHHCCCEEECHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999984246310543346775400799999999999999999999999988735776100278789931689
Q ss_pred HHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99999998608850764207887612412899899999876438887999999827733472167506889875644554
Q gi|254780190|r 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGK 324 (463)
Q Consensus 245 ~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K 324 (463)
.++++|+++||++|++++|+|+++++||.+++++++|+.+|++|+|||+|||||+||||+||+||.||++||||||||||
T Consensus 240 ~~~~~L~~~tgl~~~~a~n~~~a~~~~D~~~e~~~~L~~la~~L~KIa~Dirll~SGPr~g~~Ei~lP~~q~GSSiMPgK 319 (450)
T cd01357 240 LVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLPAVQPGSSIMPGK 319 (450)
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 99999999749997568888999957729999999999999999999999999736865672034569999978888998
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHC
Q ss_conf 56246788765200121012355532234576653002344322445899999999999999873490078999988743
Q gi|254780190|r 325 VNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 (463)
Q Consensus 325 ~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~ 404 (463)
|||++||+++|+|+||+|||.+|++++++||||||+|+|+|+||+++|+.+|++++..|+++|++||++|++||++++++
T Consensus 320 vNPv~~E~v~~v~~qV~Gnd~~v~~a~~~G~leLNv~~P~i~~~ll~Si~lL~~a~~~f~~~cl~Gi~~N~er~~~~l~~ 399 (450)
T cd01357 320 VNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVEN 399 (450)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 79789999999899985619999987413436776017488999999999999999999999876489889999999983
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCC
Q ss_conf 973662011055389999999999982999899999858999889998518
Q gi|254780190|r 405 SLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVK 455 (463)
Q Consensus 405 s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lld 455 (463)
|++|+|+|+|+|||++|++|||+|+++|++|||++++.|+||++|||++|+
T Consensus 400 s~~L~TaL~p~iGY~~aa~Iak~A~~~g~tlre~~~e~~~ls~ee~d~iln 450 (450)
T cd01357 400 SIGIVTALNPYIGYEAAAEIAKEALETGRSVRELVLEEGLLTEEELDEILS 450 (450)
T ss_pred CCCHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHC
T ss_conf 901699832076399999999999993997999998849999999999849
No 10
>cd01596 Aspartatase_like Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=1259.68 Aligned_cols=450 Identities=58% Similarity=0.897 Sum_probs=445.8
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02575587633863243217799887608778877899999999999999999999808999899999999999998587
Q gi|254780190|r 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGK 84 (463)
Q Consensus 5 R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~ 84 (463)
|+|+|+||+++||+|+|||+|||||++||||||+++|++||+||++||||||+||.++|+||++++++|++|||||++|+
T Consensus 1 R~E~D~lG~~~vp~~~~yG~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~g~L~~~~~~aI~~Ac~ei~~g~ 80 (450)
T cd01596 1 RIEKDSLGEVEVPADAYYGAQTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGK 80 (450)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98607887712777563159899999675988988999999999999999999999809999999999999999998499
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41126500220242100168730578999999732357986430744653012571234456789998663368789999
Q gi|254780190|r 85 LDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164 (463)
Q Consensus 85 ~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l 164 (463)
|+||||||+||||||||||||+||||||||+|++|+++|+| ++|||||||++|||||+|||+++++++..+.+.|+|+|
T Consensus 81 ~~~~F~vdv~Q~GsGTstNMN~NEVIAn~A~e~lg~~~g~~-~~~~~d~~~~~qsSnd~~~~a~~~~a~~~~~~~L~~al 159 (450)
T cd01596 81 LDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKKGKY-PVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPAL 159 (450)
T ss_pred CHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64304110320789764544189999999999838877877-78898323566788882999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHH
Q ss_conf 99999999998750786432144001760031999999999999822899999788530066887011045443635579
Q gi|254780190|r 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244 (463)
Q Consensus 165 ~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~ 244 (463)
+.|+++|.+|+++|+|++|+||||||||+|+||||||++|+++++|+++||+.++++++++||||||||||+|++++|++
T Consensus 160 ~~L~~~l~~Ka~e~~~iik~GRTHLQdA~PiTlGqef~~~a~~l~r~~~RL~~~~~~l~~l~lGGtAvGTG~na~~~~~~ 239 (450)
T cd01596 160 EQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPGYAE 239 (450)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHH
T ss_conf 99999999999974697643544464163352899999999999999999999999998753887621078889812789
Q ss_pred HHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 99999998608850764207887612412899899999876438887999999827733472167506889875644554
Q gi|254780190|r 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGK 324 (463)
Q Consensus 245 ~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K 324 (463)
.++++|+++||++|++++|+|+++++||.+++++++|+.+|++|+|||+|||||+||||+||+||.||++||||||||||
T Consensus 240 ~v~~~L~~~tgl~~~~a~n~~~a~~~rD~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP~~q~GSSiMPgK 319 (450)
T cd01596 240 KVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPANQPGSSIMPGK 319 (450)
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 99999999859997137879999818839999999999999999999999999716876786123469999988888999
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHC
Q ss_conf 56246788765200121012355532234576653002344322445899999999999999873490078999988743
Q gi|254780190|r 325 VNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 (463)
Q Consensus 325 ~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~ 404 (463)
||||+||+++|+|+||+|||.+|++|+++||||||+|+|+|+||+|+|+.+|++++.+|+++||+||+||+|||++++++
T Consensus 320 vNPv~~E~v~~v~~qViGnd~ti~~A~~~G~lELNv~~Plia~~ll~si~lL~~a~~~f~~~ci~Gi~vn~e~~~~~l~~ 399 (450)
T cd01596 320 VNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVEN 399 (450)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 89779999999899996351787787630236762034389999999999999999999999876589989999999984
Q ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCC
Q ss_conf 973662011055389999999999982999899999858999889998518
Q gi|254780190|r 405 SLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVK 455 (463)
Q Consensus 405 s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lld 455 (463)
|+||+|+|+|+|||++|++|||+|+++|++|||++++.+++|++|||++||
T Consensus 400 S~~LvTaL~p~iGY~~aa~Iak~A~~~g~sl~e~~le~~~ls~ee~d~lld 450 (450)
T cd01596 400 SLMLVTALNPHIGYEKAAEIAKEALKEGRTLREAALELGLLTEEELDEILD 450 (450)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHC
T ss_conf 830898833186399999999999993998999998859999999999749
No 11
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=1246.34 Aligned_cols=462 Identities=44% Similarity=0.722 Sum_probs=457.9
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99860257558763386324321779988760877887789--9999999999999999999808999899999999999
Q gi|254780190|r 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQP--LVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE 78 (463)
Q Consensus 1 m~~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~--~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ 78 (463)
|+++|+|+|+||+.+||+|+|||+||.||++||+||+.++. |+||+++++||||||.||.++|.||+++++||++|||
T Consensus 1 ~~~~R~E~D~lGe~~ip~evYyGI~TlRA~eNF~Is~~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~ACD 80 (471)
T COG1027 1 STDMRIERDLLGEREIPAEVYYGIHTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACD 80 (471)
T ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98512445422554476002120678778863777688666448999999999999998655517787789999999999
Q ss_pred HHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99858741126500220242100168730578999999732357986430744653012571234456789998663368
Q gi|254780190|r 79 EVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVH 158 (463)
Q Consensus 79 ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~ 158 (463)
||++||++||||+|+||||+|||+|||+||||||||+|+||+++|+|.++||||||||||||||+||||+||+++..+ .
T Consensus 81 eil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l-~ 159 (471)
T COG1027 81 EILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSL-R 159 (471)
T ss_pred HHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHH-H
T ss_conf 997585511043001116877552563899999999998567777503568755343000356433058999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCC
Q ss_conf 78999999999999998750786432144001760031999999999999822899999788530066887011045443
Q gi|254780190|r 159 RLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238 (463)
Q Consensus 159 ~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna 238 (463)
+|++++..|+++|+.|++||++++|+||||||||+|+|+||||.+|+..|.||++||..+.+++.+++|||||+|||+|+
T Consensus 160 ~L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiNa 239 (471)
T COG1027 160 KLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINA 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 99999999999999999998655522745413446601314679999999999999999998888505785011467689
Q ss_pred CCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 63557999999998608850764207887612412899899999876438887999999827733472167506889875
Q gi|254780190|r 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGS 318 (463)
Q Consensus 239 ~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GS 318 (463)
|++|.+.++++|+++||++|++++|+++++|+.|.|+++|++|+++|+.|+|||||||||+||||+|++||.||++|+||
T Consensus 240 ~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~~Q~GS 319 (471)
T COG1027 240 PKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGS 319 (471)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 84379999999999758887551258988706537999999999999999998625655326975675632477778998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHH
Q ss_conf 64455456246788765200121012355532234576653002344322445899999999999999873490078999
Q gi|254780190|r 319 SIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENI 398 (463)
Q Consensus 319 SiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm 398 (463)
||||||+|||+||+++|+|++|+|||.+|++|+++||||||||+|+|+|++++|+.+|+++|.+|+++||+||++|+|+|
T Consensus 320 SIMPgKVNPVipEvvnQvcf~ViGnD~tit~AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C 399 (471)
T COG1027 320 SIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERC 399 (471)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77888768415999999999996514788998871434465010899999999999999999999999864130379999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
Q ss_conf 98874397366201105538999999999998299989999985899988999851889843887
Q gi|254780190|r 399 QLSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 (463)
Q Consensus 399 ~~~l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P~ 463 (463)
++++++|.+++|+|+|+|||+.+++|+|+|.++|+++||+++++|+|+++|++++|+|++|++|+
T Consensus 400 ~~~v~nSigivTaLnp~iGy~~~~~iaK~a~~tgksv~evvLe~g~Lteeel~~Il~~~~m~~p~ 464 (471)
T COG1027 400 EEYVENSIGIVTALNPYIGYENAAIIAKEALETGKSVREVVLERGLLTEEELDDILSPENMTKPG 464 (471)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCHHHCCCCC
T ss_conf 99998446788761310151178899999997488599999872798899999870956317864
No 12
>KOG1317 consensus
Probab=100.00 E-value=0 Score=1166.50 Aligned_cols=459 Identities=68% Similarity=1.032 Sum_probs=455.5
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 86025755876338632432177998876087788--7789999999999999999999980899989999999999999
Q gi|254780190|r 3 NTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGE--EKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEV 80 (463)
Q Consensus 3 ~~R~E~D~lG~~~vp~~~~yG~qT~Ra~~nf~i~~--~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei 80 (463)
.+|+|+|.+||++||+|+|||+||||+..||+||| +|||..+|+||+++|||||.+|.++| ||++.++||.+|||||
T Consensus 27 ~fR~E~DtfGe~~VP~DkyyGAQT~Rs~~NF~IGg~~ERMP~pii~AfGiLKkaaA~vN~~~G-LDpkis~Ai~~AadeV 105 (487)
T KOG1317 27 SFRTERDTFGEIEVPADKYYGAQTQRSLQNFKIGGERERMPEPIIQAFGILKKAAAEVNQEYG-LDPKISKAISQAADEV 105 (487)
T ss_pred CHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_conf 211102456653466043330788877635645880102766899998899999998757618-8858899999988888
Q ss_pred HCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85874112650022024210016873057899999973235798643074465301257123445678999866336878
Q gi|254780190|r 81 INGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRL 160 (463)
Q Consensus 81 ~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L 160 (463)
++||++||||+.+||||||||+|||+||||+|||+|++|+++|+++ ||||||||+||||||+|||||||++..++..+|
T Consensus 106 ~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIsNrAieilGg~~GsK~-VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~L 184 (487)
T KOG1317 106 ASGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGKLGSKK-VHPNDHVNKSQSSNDTFPTAMHIAAATEINSRL 184 (487)
T ss_pred HCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5476335675468863787424672777776778998645446663-587542341114677640478999999888777
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCC
Q ss_conf 99999999999999875078643214400176003199999999999982289999978853006688701104544363
Q gi|254780190|r 161 LPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 (463)
Q Consensus 161 ~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~ 240 (463)
+|++..|.++|+.|++||+|++|+||||+|||+|.|+||||++|.+++...++|+..+++|++++.+||||||||+|+.+
T Consensus 185 ~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAVGTGLNTr~ 264 (487)
T KOG1317 185 IPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAVGTGLNTRK 264 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 58889899998853688899998522124555554010022469999998999998641589999637851025655664
Q ss_pred CCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
Q ss_conf 55799999999860885076420788761241289989999987643888799999982773347216750688987564
Q gi|254780190|r 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSI 320 (463)
Q Consensus 241 ~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSi 320 (463)
||+++++++++++|||||+.+||+|++++.||+++|+|++|.++|++|+||+||||+|.||||||+||+.||+++|||||
T Consensus 265 GFaeKia~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LPENEPGSSI 344 (487)
T KOG1317 265 GFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPENEPGSSI 344 (487)
T ss_pred CHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57899999999873897410661888776545678741307789999999852112105788777653136789998666
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHH
Q ss_conf 45545624678876520012101235553223457665300234432244589999999999999987349007899998
Q gi|254780190|r 321 MPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQL 400 (463)
Q Consensus 321 MP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~ 400 (463)
|||||||++||+++|+|+|||||+++|++++++||||||||+|+|+.|+|+|+++|+|++.+|..+|++||++|+||+.+
T Consensus 345 MPGKVNPTQcEamTmvcaQVMGN~vAvtvgGsnGhFELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~Gi~aN~eri~k 424 (487)
T KOG1317 345 MPGKVNPTQCEAMTMVCAQVMGNHVAVTVGGSNGHFELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAK 424 (487)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88887917889999999998457358996366762677330489999999888876401312214245223278788999
Q ss_pred HHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
Q ss_conf 874397366201105538999999999998299989999985899988999851889843887
Q gi|254780190|r 401 SLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 (463)
Q Consensus 401 ~l~~s~~lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P~ 463 (463)
.+.+|+||+|+|+|+||||+|++|||.|+++|.+|++.+++.|++++++||+|+.|++|.||.
T Consensus 425 l~~eSLMLVTaLNPhIGYD~aa~iAK~AHKng~TLk~~Al~lGvltee~F~ewV~Pe~MlGPk 487 (487)
T KOG1317 425 LLNESLMLVTALNPHIGYDNAAKIAKTAHKNGTTLKEEALKLGVLTEEQFDEWVVPEKMLGPK 487 (487)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCHHHCCCCC
T ss_conf 987767654304865474068899997652687689989885547599887650877404999
No 13
>cd01597 pCLME pCLME: prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like This group contains proteins similar to pCLME, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=0 Score=650.75 Aligned_cols=405 Identities=22% Similarity=0.269 Sum_probs=357.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf 32177998876087788778999999999999999999998089998999999999999985874112650022024210
Q gi|254780190|r 21 YWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGT 100 (463)
Q Consensus 21 ~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGT 100 (463)
.||-...|++ .| +...|+++..||+|+|+||.++|+||++.+++|.++|+. +.+|+.+.+.++
T Consensus 5 ~y~~~e~~~i----~s----~~~~i~~~~~ve~A~A~a~~~lG~ip~~~a~~I~~a~~~---------~~~d~~~~~~~~ 67 (437)
T cd01597 5 LFGTPAMREI----FS----DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADV---------ERLDLEALAEAT 67 (437)
T ss_pred CCCCHHHHHH----CC----HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC---------CCCCHHHHHHHH
T ss_conf 3388999987----29----199999999999999999987699999999999987276---------467999999999
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 01687305789999997323579864307446530125712344567899986633687899999999999999875078
Q gi|254780190|r 101 QSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 (463)
Q Consensus 101 s~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~ 180 (463)
++++|.+..+.+...+.+|...|.| || +||||||++|||++|.+...+ +.|++.+..|+++|.++|++|++
T Consensus 68 ~~~~~~v~a~v~~l~~~~~~~~g~~--vH------~G~TsnDv~~Ta~~l~l~~~~-~~l~~~l~~l~~~L~~~A~~~~~ 138 (437)
T cd01597 68 ARTGHPAIPLVKQLTAACGDAAGEY--VH------WGATTQDIIDTALVLQLRDAL-DLLERDLDALLDALARLAATHRD 138 (437)
T ss_pred HHCCCCHHHHHHHHHHHCCHHHCCC--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8728828999999998568130275--57------997853138669999999889-99999999999999999998259
Q ss_pred CCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 64321440017600319999999999998228999997885300668870110454436355799999999860885076
Q gi|254780190|r 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFIT 260 (463)
Q Consensus 181 ~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~ 260 (463)
++|+||||+|||+|+||||+|++|+++|.|+++||..+++++..+|||| ||||+. +.+.+...+.+++++.+||++.+
T Consensus 139 ~~~~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-AvGt~~-~~~~~~~~~~~~~a~~Lgl~~~~ 216 (437)
T cd01597 139 TPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGG-AAGTLA-SLGDQGLAVQEALAAELGLGVPA 216 (437)
T ss_pred CEEECCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCC-CCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 8201444674134341999999999999999999999999776435676-645454-57863799999999994899999
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 4207887612412899899999876438887999999827733472167506--88987564455456246788765200
Q gi|254780190|r 261 APNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCA 338 (463)
Q Consensus 261 a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~ 338 (463)
..++++||++++++++|+.++++|+|||+|||+|+ ++|||||.+| ..|+||||||||+||++||.++++|.
T Consensus 217 ----~~~~~~rd~~~e~~~~l~~la~~L~kia~Di~ll~---~~~~gei~~p~~~~~~GSS~MP~K~NPv~~E~v~~~a~ 289 (437)
T cd01597 217 ----IPWHTARDRIAELASFLALLTGTLGKIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALAR 289 (437)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf ----86543538999999999999888999999999998---74330421543589988788899879788999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEE------EEC
Q ss_conf 12101235553223457665300234432244589999999999999987349007899998874397366------201
Q gi|254780190|r 339 HIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------TAL 412 (463)
Q Consensus 339 qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv------TaL 412 (463)
+|+|+..++ +.+..+++|.+.+.|.+.++++.++..+.+.+..+..+|++||+||++||++|++.|.+++ ++|
T Consensus 290 ~v~g~~~~~-~~~~~~~~Erd~~~~~~~~~~l~~~~~l~~~~l~~~~~~l~~l~vn~erm~~nl~~~~~~i~ae~~~~~L 368 (437)
T cd01597 290 RVPGLAALL-LDAMVQEHERDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMAL 368 (437)
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 998779999-9876754210546257789889999999999999999875115355999999998562689899999998
Q ss_pred CHHHHHHHH----HHHHHHHHHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCC
Q ss_conf 105538999----99999999829998999998----58999889998518898438
Q gi|254780190|r 413 TSKIGYDNA----SMIAKKAHHNSTTLKEEAIA----SGLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 413 ~p~iGy~~a----~~iak~A~~~g~~l~e~~~~----~g~ls~~eld~lldP~~mt~ 461 (463)
+|+|||+.| ++++++|+++|++|+|++++ .+++|++|+|++|||++|+|
T Consensus 369 ~~~ig~~~Ahe~v~~~a~~A~~~g~~l~e~~~~d~~~~~~l~~~el~~lldP~~~iG 425 (437)
T cd01597 369 APKLGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPANYLG 425 (437)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHCC
T ss_conf 633898999999999999999979889999864856437999999998729987739
No 14
>pfam00206 Lyase_1 Lyase.
Probab=100.00 E-value=0 Score=621.95 Aligned_cols=310 Identities=47% Similarity=0.658 Sum_probs=292.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 76338632432177998876087788778999999999999999999998089998999999999999985-87411265
Q gi|254780190|r 12 GTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVIN-GKLDDHFP 90 (463)
Q Consensus 12 G~~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~-g~~~d~Fp 90 (463)
|..++|.++|||++|+|+..||+++. +-|++++.+|+++|++ |+|+++.+++|.+||++|++ ++++|+||
T Consensus 1 Gr~~~~~~~l~~~ft~~~~~~~rl~~-----~dI~~~~a~~~~la~~----~~i~~~~~~~I~~al~~i~~~~~~~~~f~ 71 (312)
T pfam00206 1 GRFTVPADALMGIFTDRSRFNFRLSE-----EDIKGLAALKKAAAKA----NVLLKEEAAAIIKALDEVAEEGKADDAFV 71 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98588479999998389880881207-----5899999999999985----99998999999999999984222389703
Q ss_pred CCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00220242100168730578999999732357986430744653012571234456789998663368789999999999
Q gi|254780190|r 91 LVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVA 170 (463)
Q Consensus 91 v~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~a 170 (463)
+++||+|+||++|||+||||++++. +++|||||||+||||||++|||++|++...+.+.|.+.|..|+++
T Consensus 72 i~~~~e~~~~~i~~~l~e~i~~~~~----------~~~~~~~~vH~g~SsnD~~~Ta~~L~~~~~l~~~l~~~l~~l~~~ 141 (312)
T pfam00206 72 LKVIQEGSGTAVNMNLNEVIGELLG----------QLVHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDA 141 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCC----------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3621476788999999999762347----------778853444388771221888999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHH
Q ss_conf 9999875078643214400176003199999999999982289999978853006688701-104544363557999999
Q gi|254780190|r 171 LTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQN 249 (463)
Q Consensus 171 L~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~ 249 (463)
|.++|++|++++|+||||+|||+|+|||++|++|+++|.|+++||..++++++.+|+||+| +||+++++++|...++++
T Consensus 142 L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lggaa~~gt~~~~d~~~~~~~~~~ 221 (312)
T pfam00206 142 LKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKE 221 (312)
T ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99999985676113654662132011999999999999999999999999997987628998677667882079999999
Q ss_pred HHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 99860885076420788761241289989999987643888799999982773347216750688987564455456246
Q gi|254780190|r 250 IRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQ 329 (463)
Q Consensus 250 La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K~NPv~ 329 (463)
|++++|+++ +.+|.++++++||.+++++++|+.++++|+|||+|||+|+|+| .|+.|+.+|..|+|||||||||||++
T Consensus 222 l~~~~g~~~-~~~n~~~~~~~rD~~~e~~~~l~~~~~~L~kia~Di~l~~s~e-~g~~~~~~~~~~~GSSiMP~K~NP~~ 299 (312)
T pfam00206 222 LGFFTGLPV-PAPNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FGFVELSLAEGEPGSSIMPGKVNPDQ 299 (312)
T ss_pred HHHHHCCCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 999848998-8878888872445999999999999999999999999980888-79577238999986678899859659
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 7887652001210
Q gi|254780190|r 330 CEAITQVCAHIFG 342 (463)
Q Consensus 330 ~E~i~~~a~qV~G 342 (463)
||+++|+|+||+|
T Consensus 300 ~E~~~g~~~~v~G 312 (312)
T pfam00206 300 LELLRGKAGRVFG 312 (312)
T ss_pred HHHHHCCHHCCCC
T ss_conf 8998481441229
No 15
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=0 Score=578.45 Aligned_cols=410 Identities=24% Similarity=0.296 Sum_probs=344.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
Q ss_conf 24321779988760877887789999999999999999999980899989999999999999858741126500220242
Q gi|254780190|r 19 DRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGS 98 (463)
Q Consensus 19 ~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~Gs 98 (463)
|.+||-.-+|++ .|. ...++++..|+.|+|+|+.++|+||++.+++|.++|+. +.|.++.+..+.
T Consensus 9 ~~ry~~~em~~i----fs~----~~~~~~~l~vE~Ala~Aqa~lG~IP~~aa~~I~~~~~~-------~~~d~~~~~~~~ 73 (452)
T PRK09053 9 DLYFGSPAMREI----FSD----RATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDA-------ERLDLDALAQAA 73 (452)
T ss_pred CCCCCCHHHHHH----HCH----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-------CCCCHHHHHHHH
T ss_conf 667687999988----293----89999999999999999987699999999999986144-------468999999999
Q ss_pred CCCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10016873057899999-97323579864307446530125712344567899986633687899999999999999875
Q gi|254780190|r 99 GTQSNMNVNEVISNRAI-EILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISD 177 (463)
Q Consensus 99 GTs~nMN~NEVIanra~-e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~ 177 (463)
.+..|+.+.-|.+-+.. ....++.| .+|| +|+||||++||++.|..... .+.|++.|..|+++|.++|++
T Consensus 74 ~~~~h~vi~~V~~l~~~~~~~~~~a~--~~vH------~GaTS~Di~DTa~~L~l~~a-l~~l~~~l~~l~~~L~~lA~~ 144 (452)
T PRK09053 74 ALAGNLAIPLVKQLTAQVAARDAEAA--RYVH------WGATSQDIIDTGLVLQLRDA-LDLLEPDLDRLCAALATLAAR 144 (452)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCC--CEEE------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 88278748999999998730275201--1115------78767459999999999999-999999999999999999998
Q ss_pred CCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 07864321440017600319999999999998228999997885300668870110454436355799999999860885
Q gi|254780190|r 178 FQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLP 257 (463)
Q Consensus 178 ~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~ 257 (463)
|++++|+||||+|||+|+|||++|++|+++|.|+++||..+++++..+++|| |||| +++..+....+.+.+++.+||+
T Consensus 145 ~~~t~m~GRTH~Q~A~P~TfG~k~a~w~~~l~r~~~rL~~~~~~~~~~~lgG-AvGt-~a~~~~~~~~v~~~la~~Lgl~ 222 (452)
T PRK09053 145 HRATPMIGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGG-AAGT-LASLGERALAVAQALAEELQLA 222 (452)
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCC-CCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6277200201478673313999999999999999999999999888871377-4464-4467754099999999986899
Q ss_pred CEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0764207887612412899899999876438887999999827733472167506--88987564455456246788765
Q gi|254780190|r 258 FITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQ 335 (463)
Q Consensus 258 ~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~ 335 (463)
+.. ..+..+||.+++++++|+.++++|+|||+|||+|+ |+|+||+.+| +.|+||||||||+||+.||.+.+
T Consensus 223 ~~~----~~~~~~rd~~~e~~~~L~~ia~~l~kia~Dirll~---~~eigEl~E~~~~~q~GSS~MPhK~NPv~~E~i~~ 295 (452)
T PRK09053 223 LPA----LPWHTQRDRIVEFASALGLLAGTLGKIARDVSLLM---QTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLT 295 (452)
T ss_pred CCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 888----87521359999999999999988999999999986---07657452567899987577887616698999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEE------
Q ss_conf 20012101235553223457665300234432244589999999999999987349007899998874397366------
Q gi|254780190|r 336 VCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------ 409 (463)
Q Consensus 336 ~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv------ 409 (463)
.|.+|.|+..++ +.+....+|...-..-+-+..+..+.++.+++-....+|++||+||+++|++|++.+.+++
T Consensus 296 lar~v~~~~~~~-~~~~~~~hERd~~~~~~e~~~lp~~~~l~~~~l~~~~~~l~gL~v~~~~M~~nL~~~~gli~sE~v~ 374 (452)
T PRK09053 296 AATRAPGLVATL-FAAMVQEHERALGGWHAEWDTLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVM 374 (452)
T ss_pred HHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHCCHHHHHHHH
T ss_conf 999999769999-9874775122442278999999999999999999999998538777999999998715678899999
Q ss_pred EECCHHHHHHHHHHH----HHHHHHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCCC
Q ss_conf 201105538999999----99999829998999998----589998899985188984388
Q gi|254780190|r 410 TALTSKIGYDNASMI----AKKAHHNSTTLKEEAIA----SGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 410 TaL~p~iGy~~a~~i----ak~A~~~g~~l~e~~~~----~g~ls~~eld~lldP~~mt~P 462 (463)
++|+|++||+.|+++ +++|+++|++|+|++.+ .++||++|||++|||++|+|-
T Consensus 375 ~aL~~~~Gr~~Ahe~V~~~a~~A~~~~~~l~e~l~~d~~v~~~Ls~~eld~lldP~~ylG~ 435 (452)
T PRK09053 375 LALADRIGRLDAHHLVEQASKRAVAQGRHLRDVLAEDPQVSAHLSPAALDRLLDPAHYLGQ 435 (452)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHHHHHHCHHHHHCC
T ss_conf 9988617999999999999999999798899998719486634999999988299977085
No 16
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains proteins similar to ASAL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotleic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In h
Probab=100.00 E-value=0 Score=548.57 Aligned_cols=391 Identities=20% Similarity=0.222 Sum_probs=333.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 89999999999999999999980899989999999999999858741126500220242100168730578999999732
Q gi|254780190|r 40 QPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILG 119 (463)
Q Consensus 40 ~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g 119 (463)
++..+......+-+|-+..+.+.|+|+++.+++|.+++++|.++..+++|++|+.+.+ .+||++.++. |.+|
T Consensus 4 ~d~~l~~~di~~~~AH~~mL~e~Gil~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed----~~~~iE~~l~----e~~g 75 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDED----IHMAIERRLI----ERIG 75 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----HHHHHHHHHH----HHHH
T ss_conf 8899999999999999999998799999999999999999982452587325787786----1699999999----9875
Q ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHH
Q ss_conf 35798643074465301257123445678999866336878999999999999998750786432144001760031999
Q gi|254780190|r 120 GVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQ 199 (463)
Q Consensus 120 ~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~ 199 (463)
+.|. +|| +|+||||+++|+++|.+...+ ..+++.+..|+++|.++|++|.+++|+||||+|+|+|+|||+
T Consensus 76 -~~~~--~iH------~GrSrND~v~Ta~~L~lr~~l-~~l~~~l~~l~~~l~~~A~~~~~~~m~GrTH~Q~A~P~TfG~ 145 (435)
T cd01359 76 -DVGG--KLH------TGRSRNDQVATDLRLYLRDAL-LELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGH 145 (435)
T ss_pred -HHHC--HHC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEHHH
T ss_conf -7746--103------788788999999999999999-999999999999999999974698712665662153522898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-CCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHH
Q ss_conf 999999999822899999788530066887011-0454436355799999999860885076420788761241289989
Q gi|254780190|r 200 EFSGYATQVKNSIKRIEMTLDGLYELAQGGTAV-GTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCH 278 (463)
Q Consensus 200 ~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAv-GTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~ 278 (463)
||++|+++|.|+++||..++++++.+|||++|+ ||+++.++ +.+++.+||. .+.+|.++++++||.++++.
T Consensus 146 ~~~~~~~~l~r~~~rL~~~~~~~~~~plG~~A~~Gt~~~~dr-------~~~a~~LGf~-~~~~ns~~av~~rd~~~e~~ 217 (435)
T cd01359 146 YLLAYAEMLERDLERLADAYKRVNVSPLGAGALAGTTFPIDR-------ERTAELLGFD-GPTENSLDAVSDRDFVLEFL 217 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-------HHHHHHHCCC-CCCCCHHHHHHCCCHHHHHH
T ss_conf 999999999999999998986642513452003688767776-------8999982899-78746788987043999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999876438887999999827733472167506-889875644554562467887652001210123555322345766
Q gi|254780190|r 279 GAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFE 357 (463)
Q Consensus 279 ~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lE 357 (463)
++|+.++++|+|||+|+++|+|+ +||++.+| +.++||||||||+||+.+|.+++.|.+++|+..++.....+..+.
T Consensus 218 ~~l~~~~~~l~ria~Dl~~~~s~---e~g~iel~~~~~~GSSiMPqKrNP~~~E~iR~~a~~~~g~~~~~~~~~~~~p~~ 294 (435)
T cd01359 218 SAAALLMVHLSRLAEDLILWSTQ---EFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLA 294 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999999999999997066---678575259999979886345695589999999998877999999997068400
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEECCHHHH----------HHHHHHHHHH
Q ss_conf 530023443224458999999999999998734900789999887439736620110553----------8999999999
Q gi|254780190|r 358 LNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIG----------YDNASMIAKK 427 (463)
Q Consensus 358 LNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL~p~iG----------y~~a~~iak~ 427 (463)
.|--.......+++++..+..++..+.. +++++++|++||+++++.+++++|.|++.+. |+.+.+++++
T Consensus 295 ~~~d~q~~~~~l~~~~~~~~~~l~~~~~-~l~~l~vn~~rm~~~~~~~~~~at~lA~~Lv~~~GipFR~AH~iV~~lv~~ 373 (435)
T cd01359 295 YNKDLQEDKEPLFDAVDTLIASLRLLTG-VISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPFREAHHIVGRAVRL 373 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 3454788767677899999999999999-885031079999998846811899999999998599889999999999999
Q ss_pred HHHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHC
Q ss_conf 99829998999998----5899988999851889843
Q gi|254780190|r 428 AHHNSTTLKEEAIA----SGLISATEYDLIVKPEKMI 460 (463)
Q Consensus 428 A~~~g~~l~e~~~~----~g~ls~~eld~lldP~~mt 460 (463)
|.++|+++.|+..+ ...++++++.+++||++++
T Consensus 374 a~~~~~~l~el~~~~~~~~~~~~~~~i~~~ldp~~~v 410 (435)
T cd01359 374 AEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSV 410 (435)
T ss_pred HHHCCCCHHHCCHHHHHHHCCCCHHHHHHHCCHHHHH
T ss_conf 9981999676689999645347889999867999999
No 17
>cd01334 Lyase_I Lyase class I family of the Lyase_I superfamily. This family contains proteins similar to class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), and 3-carboxy-cis,cis-muconate lactonizing (CMLE) enzyme. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=0 Score=555.55 Aligned_cols=328 Identities=32% Similarity=0.447 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999998089998999999999999985874112650022024210016873057899999973235798
Q gi|254780190|r 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGS 124 (463)
Q Consensus 45 i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~ 124 (463)
|+++..|++|+|++|.++|+||++.+++|.++|+++..+..++ ..+++|+++..|||+|++|++++.|..|.
T Consensus 1 i~~~l~ve~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~e~~~~---- 72 (330)
T cd01334 1 IRYMVEVEVALAKALEELGLIPKSAAEEIRSAADEFSEKFKKD----VKEQEGSTTHDVMAFNEVLKELIGEAGGD---- 72 (330)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC----CEEECCCCCCCCHHHHHHHHHHHHHHCCC----
T ss_conf 9138999999999998839899999999999999987241202----42001577865029999999998774666----
Q ss_pred CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHH
Q ss_conf 64307446530125712344567899986633687899999999999999875078643214400176003199999999
Q gi|254780190|r 125 KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGY 204 (463)
Q Consensus 125 ~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~ 204 (463)
|+++||+|+||||++|||++|.+...+ ..|++.|..|.++|.++|++|++++|+||||+|||+|+|||++|++|
T Consensus 73 -----~~~~vH~G~TsnDi~dTa~~l~~r~al-~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~ 146 (330)
T cd01334 73 -----AARFVHYGATSNDVLDTAFPLAIRDAL-KILLPALQQLIETLAEKALKYKDVVMMGRTHLQDASPITLGQEILGW 146 (330)
T ss_pred -----CCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHH
T ss_conf -----315463798825389999999999999-99999999999999999998167701131115757772199999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99998228999997885300668870110454436355799999999860885076420788761241289989999987
Q gi|254780190|r 205 ATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284 (463)
Q Consensus 205 ~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~l 284 (463)
+++|.|+++||..+++++..+|+|| |||||.+..+++. .+.+.+++.+||. .+.+|.++ +++||.+++++++|+.+
T Consensus 147 ~~~l~r~~~rl~~~~~~~~~~~lgG-avGt~~~~~~~~~-~~~~~~a~~Lgl~-~~~~~~~~-~~~rd~~~e~~~~l~~~ 222 (330)
T cd01334 147 AYELKRDLDRLEEVKERVLFLGLGG-AVGTGASTYPDPS-EVRERVAKELGLA-VRALNTTQ-ISERDAMVELHSALKLL 222 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHCCCCHH-HHHHHHHHHHCCC-CCCCCHHH-HCCCCHHHHHHHHHHHH
T ss_conf 9999999999999999886737649-9987671389789-9999999982787-76868898-82871799999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6438887999999827733472167506--88987564455456246788765200121012355532234576653002
Q gi|254780190|r 285 ATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYK 362 (463)
Q Consensus 285 a~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~ 362 (463)
+++|+|||+|||+|+| .||||+.+| ..|+||||||||+||+.||.+++.|.+|+|++.++..+..+||++.|++.
T Consensus 223 a~~l~kia~Di~~l~~---~e~~e~~~p~~~~~~GSS~MP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~erd~~~~ 299 (330)
T cd01334 223 AAILSKIARDIRLLSS---GEIGEVKEPEAKGQGGSSAMPHKVNPIASERVTALARRVIANDESILMNLALGHLRDLVDS 299 (330)
T ss_pred HHHHHHHHHHHHHHHC---CCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999999999854---4558487666789977688898859789999999999998279999987212556214687
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 34432244589999999999999987349007
Q gi|254780190|r 363 PMIAYNVLQSIQLLSDSIDSFTINCIEGIQAR 394 (463)
Q Consensus 363 Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn 394 (463)
|+....+.+++.+|..++..|. ++++||+||
T Consensus 300 ~~e~~~~~~~~~~l~~~l~~~~-~~~~gl~vN 330 (330)
T cd01334 300 PVERNAIPDVVHTLTAVLETAL-GVCKGLEVN 330 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEC
T ss_conf 9899999999999999999999-987548849
No 18
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=0 Score=543.74 Aligned_cols=411 Identities=23% Similarity=0.285 Sum_probs=326.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
Q ss_conf 63243217799887608778877899999999999999999999808999899999999999998587411265002202
Q gi|254780190|r 17 QEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQT 96 (463)
Q Consensus 17 p~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~ 96 (463)
|-|-=||..-.|++ | |. ...|+++..|+.|.|+++.++|+||++.+++|.++|+.... |---++-..
T Consensus 5 Pld~RY~~~em~~i--f--se----~~~~~~~l~vE~ala~a~~~~g~ip~~~a~~i~~~~~~~~~----d~~~i~~~e- 71 (449)
T PRK08540 5 PIDYRYGTPEMKRV--W--SE----ENKLQKMLEVEAALARAEAELGMIPKEAAEEINEKASTKSV----KLERVKEIE- 71 (449)
T ss_pred CCCCCCCCHHHHHH--C--CH----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC----CHHHHHHHH-
T ss_conf 74766598999987--0--98----99999999999999999987499999999999986454447----899999999-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42100168730578999999732357986430744653012571234456789998663368789999999999999987
Q gi|254780190|r 97 GSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKIS 176 (463)
Q Consensus 97 GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~ 176 (463)
..|+..|.-|+... .|.+++..|. +|| +|+||||+++|+++|.+... .+.+.+.|..|+++|.++|+
T Consensus 72 ---~~~~hdv~a~v~~l-~e~~~~~~~~--~vH------~G~Ts~Di~dTa~~L~~~~~-~~~i~~~l~~l~~~L~~~A~ 138 (449)
T PRK08540 72 ---AEIHHDIMAVVKAI-SEVCEGDAGE--YVH------FGATSNDIIDTATALQLKDS-LDILEEKLKTLLGVLLDKAE 138 (449)
T ss_pred ---HHHCCCHHHHHHHH-HHHCCHHHHC--CEE------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf ---98489829999999-9864424003--044------28778878988999999999-99999999999999999999
Q ss_pred HCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 50786432144001760031999999999999822899999788530066887011045443635579999999986088
Q gi|254780190|r 177 DFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGL 256 (463)
Q Consensus 177 ~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl 256 (463)
+|++++|+||||+|||+|+|||++|++|+++|.|+++||..+.++++.+++|| ||||+.+..+. ...+.+++++.+||
T Consensus 139 ~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~~~G-AvGt~a~~~~~-~~~~~~~~~~~Lgl 216 (449)
T PRK08540 139 EHKNTVCIGRTHGQHAVPTTYGMKFAIWASEIQRHIERLEQLKPRVCVGQMTG-AVGTQAAFGEK-GIEIQKRVMEILGL 216 (449)
T ss_pred HCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHCCCCC-HHHHHHHHHHHHCC
T ss_conf 82698620567884103316999999999999999999999999887412358-76640016974-59999999998389
Q ss_pred CCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 50764207887612412899899999876438887999999827733472167506--8898756445545624678876
Q gi|254780190|r 257 PFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAIT 334 (463)
Q Consensus 257 ~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~ 334 (463)
+..+.. .++.+||.++|++++|+.++++|+|||+|||+|+ ++||||+.+| +.|+||||||||+||+.+|.+.
T Consensus 217 ~~~~~~---~~~~~rd~~~e~~~~l~~ia~~l~kia~Di~~l~---~~e~ge~~e~~~~~~~GSS~MPhK~NPv~~E~i~ 290 (449)
T PRK08540 217 GPVDIS---NQVIQRDRHAEFMMFLANIASTLDKIGLEIRSLQ---RTEIGEVEESFGKKQVGSSTMPHKRNPITSEQVC 290 (449)
T ss_pred CCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 977864---3212300799999999998736999999999975---2345703047899997138889872854689899
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCC--EEEE-
Q ss_conf 5200121012355532234576653002344322445899999999999999873490078999988743973--6620-
Q gi|254780190|r 335 QVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM--LVTA- 411 (463)
Q Consensus 335 ~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~--lvTa- 411 (463)
+.+..+.++... .+.+.....|.+...+..-++++.++.++.+++..+..+|++||+||++||++|++.+.+ ++++
T Consensus 291 gla~~~~~~~~~-~l~~~~~~~erDl~~~~~e~~~l~~~~~l~~~~l~~~~~~l~~l~vn~erm~~nl~~~~~~i~ae~l 369 (449)
T PRK08540 291 GLARVVRSNVEP-ALLNNPLWDERDLTNSSCERVIFPESCVLTDHILKLMIKVLEGLEFNPENIRRNLELTKGLNMAERV 369 (449)
T ss_pred HHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999988899-8725741001010124788886799999999999999987751835699999998855177668999
Q ss_pred ---CCHH-H----HHHHHHHHHHHHHHCCCCHHHHHHHC----CCCCHHHHHHHCCHHHHCCC
Q ss_conf ---1105-5----38999999999998299989999985----89998899985188984388
Q gi|254780190|r 412 ---LTSK-I----GYDNASMIAKKAHHNSTTLKEEAIAS----GLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 412 ---L~p~-i----Gy~~a~~iak~A~~~g~~l~e~~~~~----g~ls~~eld~lldP~~mt~P 462 (463)
|+++ + +|+.+.+++++|.++|++|+|++++. .+++++|++++|||++|+|-
T Consensus 370 ~~~L~~~glg~~~Ahe~v~~~a~~A~~~g~~l~e~~l~~~~~~~~l~~~el~~lldP~~yiG~ 432 (449)
T PRK08540 370 MIELAKRGMGRQEAHELVRQAAMKAFEEGRHLKEVLLEEPEVMKYLTEEEIEELLDPETYIGT 432 (449)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHCCC
T ss_conf 999998599879999999999999999699899998658553168999999986699871684
No 19
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=100.00 E-value=0 Score=547.15 Aligned_cols=393 Identities=21% Similarity=0.276 Sum_probs=334.3
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHCCCCCCCCCCCH
Q ss_conf 87608778877899999999999999999999808999899999999999998587411-26500220242100168730
Q gi|254780190|r 29 SLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDD-HFPLVVWQTGSGTQSNMNVN 107 (463)
Q Consensus 29 a~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d-~Fpv~v~q~GsGTs~nMN~N 107 (463)
.+..|.-| .+++..++.+=...-.|-..+=.+.|+|++|.++-|.++.++|......+ +|..++= ---.|||
T Consensus 13 ~~~~f~~S-l~FD~~l~~~Di~~~~AH~~~L~k~GiLt~Ee~~~l~~gL~~l~~e~~~~P~~~~~~~----~EDiH~a-- 85 (469)
T TIGR00838 13 AVAKFNAS-LSFDKELAEADIEGSIAHTKMLKKAGILTEEEAAKLIEGLNELKEEVREGPKFNLDVD----LEDIHMA-- 85 (469)
T ss_pred HHHHHCCC-HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCHHHHH--
T ss_conf 99960487-5789999997213359999998752798888999999999999998860888789617----1035679--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 57899999973235798643074465301257123445678999866336878999999999999998750786432144
Q gi|254780190|r 108 EVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRT 187 (463)
Q Consensus 108 EVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRT 187 (463)
|.++.++++|.+.|.+ +| .|+||||+|.|.+||++...+ ..|.++|..++++|.++|+.+.+++|||||
T Consensus 86 --~E~~Li~~~G~d~ggk--lH------TGRSRNDQVATDlrl~lr~~v-~~~~~~l~~~~~~L~e~Ae~~~~~~mPGYT 154 (469)
T TIGR00838 86 --IERELIDRVGEDLGGK--LH------TGRSRNDQVATDLRLYLRDHV-REIAEALLDLQKVLIELAEKHVETLMPGYT 154 (469)
T ss_pred --HHHHHHHHCCHHHCCC--CC------CCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf --9888876237010131--24------678764178998999999999-999999999999999986128736614851
Q ss_pred HCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHH
Q ss_conf 00176003199999999999982289999978853006688701-10454436355799999999860885076420788
Q gi|254780190|r 188 HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFE 266 (463)
Q Consensus 188 HlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~ 266 (463)
|||+||||||+|++.+|+++|.||.+||..++.|++++|||.+| +||++..++.| +++++||.. ...|+.|
T Consensus 155 HLQrAQPi~lAHhLLAY~~~l~RD~~RL~d~~kR~n~SPLGsGAlAGt~f~iDR~~-------~A~lLGF~~-~~~NSlD 226 (469)
T TIGR00838 155 HLQRAQPITLAHHLLAYAEMLERDYERLQDALKRVNVSPLGSGALAGTSFPIDREY-------TAELLGFDA-VTENSLD 226 (469)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH-------HHHHCCHHH-HHHCCHH
T ss_conf 01350105699999999989998899999999885048865503206898768888-------976318678-8752046
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 7612412899899999876438887999999827733472167506-889875644554562467887652001210123
Q gi|254780190|r 267 ALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHA 345 (463)
Q Consensus 267 a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ 345 (463)
++++||+++|+.++++.++++|||||.||.+|+| .|||.|.|| +...||||||||+||+++|.+|+.|.+|+||-+
T Consensus 227 aVSdRDFi~E~l~~~a~~m~hLSR~aEelIlw~s---~EFgfieL~D~~stGSSiMPQKKNPD~aELiRGK~Grv~G~L~ 303 (469)
T TIGR00838 227 AVSDRDFIIELLFVAALIMVHLSRLAEELILWSS---QEFGFIELPDEFSTGSSIMPQKKNPDVAELIRGKTGRVIGNLT 303 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6520789999999999997417689899999844---6876067457320057688887772079999875526899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 55532234576653002344322---------445899999999999999873490078999988743973662011055
Q gi|254780190|r 346 AITFANSQGHFELNVYKPMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416 (463)
Q Consensus 346 ti~~a~~~G~lELNv~~Plia~~---------ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL~p~i 416 (463)
+..+--.+ +|+ +|| +++|+.-+.+.+..++. ++++|+||+|||++....+++++|.||++|
T Consensus 304 g~L~~lKa--------lP~-aYNrDlQEdkE~LFD~v~t~~~~~~~~~~-~l~~i~vn~er~~e~A~~~f~~ATdLADyL 373 (469)
T TIGR00838 304 GLLTILKA--------LPL-AYNRDLQEDKEPLFDAVKTVELSLEVMTG-MLDTIKVNKERMEEAASAGFSNATDLADYL 373 (469)
T ss_pred HHHHHHHH--------CCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999711--------233-23510013783678899999999999999-983081587899998644887078899999
Q ss_pred ----H------HHHHHHHHHHHHHCCC--------CHHHHHHHC-----CCCCHHHHHHHCCHHHHC
Q ss_conf ----3------8999999999998299--------989999985-----899988999851889843
Q gi|254780190|r 417 ----G------YDNASMIAKKAHHNST--------TLKEEAIAS-----GLISATEYDLIVKPEKMI 460 (463)
Q Consensus 417 ----G------y~~a~~iak~A~~~g~--------~l~e~~~~~-----g~ls~~eld~lldP~~mt 460 (463)
| |+.|-++|.+|.+.|+ .|.|+.++. ..+.++++.++|||+.-+
T Consensus 374 V~k~GVPFR~AH~ivG~~V~~~~e~G~~PGd~~~~~L~~lt~ee~~~~~~~~~ed~v~~~L~~~~~V 440 (469)
T TIGR00838 374 VRKRGVPFREAHHIVGELVATAIERGKSPGDVDASGLEELTLEELQKFSEEFEEDKVYEALDPEESV 440 (469)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHCCCCCHHHHHHHCCHHHHH
T ss_conf 8347998067789999999999972789998651012313679999742135733577742879999
No 20
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=533.35 Aligned_cols=412 Identities=20% Similarity=0.275 Sum_probs=347.4
Q ss_pred CCCCHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 243217----7998876087788778999999999999999999998089998999999999999985874112650022
Q gi|254780190|r 19 DRYWGA----QAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVW 94 (463)
Q Consensus 19 ~~~yG~----qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~ 94 (463)
..+||- .+-..+..|..| ..++..++..-..+-+|-+....+.|+|+++.++.|.+++++|.++...+.|++++
T Consensus 4 ~~lW~gr~~~~~~~~~~~~~~s-~~~D~~l~~~di~~s~AH~~~L~~~gil~~~e~~~I~~~L~~i~~~~~~g~~~~~~- 81 (459)
T PRK00855 4 NKLWGGRFSEGPDALVERFTAS-ISFDKRLAEEDIAGSIAHATMLAKQGILSEEEAEKILAGLDEILAEIEAGEFEFSV- 81 (459)
T ss_pred CCCCCCCCCCCCCHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 5553768899853999998466-98899999999998999999999879989999999999999999877549876788-
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02421001687305789999997323579864307446530125712344567899986633687899999999999999
Q gi|254780190|r 95 QTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKK 174 (463)
Q Consensus 95 q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~k 174 (463)
.+..+.+.|.++..|.+| +.|.+ +| +|+||||+++|++||..+..+ ..|.+.+..|+++|.++
T Consensus 82 -------~~EDih~~iE~~L~e~~G-~~g~~--lH------~gRSRNDqv~t~~rL~~r~~l-~~l~~~l~~l~~~L~~~ 144 (459)
T PRK00855 82 -------ELEDIHMAIEARLTERIG-DAGGK--LH------TGRSRNDQVATDLRLYLRDEI-DEIAELLLELQKALLDQ 144 (459)
T ss_pred -------CCCCHHHHHHHHHHHHHC-CHHHH--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf -------754289999999999847-30523--16------677788899999999999999-99999999999999999
Q ss_pred HHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 875078643214400176003199999999999982289999978853006688701-1045443635579999999986
Q gi|254780190|r 175 ISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDI 253 (463)
Q Consensus 175 a~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~ 253 (463)
|++|.+++|+||||+|+|||+||||||++|++++.|+++||..++++++++|||++| +||+++.++. .++++
T Consensus 145 A~~~~~t~mpGyTHlQ~AqP~T~g~~l~a~~~~l~rd~~rl~~~~~r~~~~pLG~~A~~Gt~~~idr~-------~~a~~ 217 (459)
T PRK00855 145 AEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGAAALAGTSFPIDRE-------RTAEL 217 (459)
T ss_pred HHHCCCCEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-------HHHHH
T ss_conf 99756987006656640245119889999999999999999988876300755533455788777768-------99998
Q ss_pred HCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 08850764207887612412899899999876438887999999827733472167506-88987564455456246788
Q gi|254780190|r 254 TGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEA 332 (463)
Q Consensus 254 tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~ 332 (463)
+||. .+..|+++++++||.++|+.++|+.++++|+|||+|+++|+| .+||++.+| +.++||||||||+||+.+|.
T Consensus 218 LGf~-~~~~ns~davs~rd~~~e~~~~la~~~~~LsRia~Dl~l~ss---~e~g~v~l~d~~~~GSSiMPqKrNP~~lEl 293 (459)
T PRK00855 218 LGFD-GVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSS---PEFGFVELPDAFSTGSSIMPQKKNPDVAEL 293 (459)
T ss_pred HCCC-CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 0998-655660776732538999999999999999999999999828---656857517888997988756669608999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEEC
Q ss_conf 76520012101235553223457665300234432244589999999999999987349007899998874397366201
Q gi|254780190|r 333 ITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTAL 412 (463)
Q Consensus 333 i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL 412 (463)
+++.+.+++|+..++.....+-.+..|--+-..-..+++++..+..++..+.. +++++++|++||+++++.++.++|.|
T Consensus 294 iR~~~~~~~G~l~~ll~~~~~lp~~y~rDlQe~k~~~~~~~~~~~~~l~~~~~-~l~~l~v~~~rm~~~~~~~~~~Atdl 372 (459)
T PRK00855 294 IRGKTGRVYGHLTGLLTVMKGLPLAYNKDLQEDKEPLFDAVDTLKLSLEAFAG-MLETLTVNKERMREAAEKGFSTATDL 372 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999868889999982896032001887788888999999999999998-86030227999999885483079999
Q ss_pred CHHH---H------HHHHHHHHHHHHHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCC
Q ss_conf 1055---3------899999999999829998999998----58999889998518898438
Q gi|254780190|r 413 TSKI---G------YDNASMIAKKAHHNSTTLKEEAIA----SGLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 413 ~p~i---G------y~~a~~iak~A~~~g~~l~e~~~~----~g~ls~~eld~lldP~~mt~ 461 (463)
+..+ | |+.+.+++++|.++|+++.|+..+ ...+.++++.+++||++.+.
T Consensus 373 Ad~Lv~~GipFR~AH~iV~~~v~~a~~~~~~l~el~~~~~~~~~~~~~~~i~~~ldp~~~v~ 434 (459)
T PRK00855 373 ADYLVRKGVPFRDAHEIVGKAVKEAEERGVDLADLSLEELQAFSPLIEEDVYEVLTPEGSVA 434 (459)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCHHHHHHHHHHCCHHHHHH
T ss_conf 99999869988999999999999999819996768999998764002599998679999998
No 21
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase_like (ASL_like): This subgroup contains proteins similar to ASL and prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE). These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has bee
Probab=100.00 E-value=0 Score=523.07 Aligned_cols=364 Identities=26% Similarity=0.293 Sum_probs=303.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC-CCCCCHHHHHHHHHHHHC
Q ss_conf 9999999999999999999980899989999999999999858741126500220242100-168730578999999732
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQ-SNMNVNEVISNRAIEILG 119 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs-~nMN~NEVIanra~e~~g 119 (463)
+...|+++..||+|+|++|.++|+||++.+++|.++|+.+ .+|+-+...+++ +++.|..++... .+.+|
T Consensus 7 d~~~i~~~l~ve~A~a~a~~~~G~ip~~~a~~I~~~~~~~---------~~d~~~~~~~~~~~~h~v~a~~~~l-~~~~~ 76 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVF---------EIDAERIAEIEKETGHDVIAFVYAL-AEKCG 76 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC---------CCCHHHHHHHHHHCCCCHHHHHHHH-HHHCC
T ss_conf 0899999999999999999877999999999999987405---------4789999999876288089999999-98677
Q ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHH
Q ss_conf 35798643074465301257123445678999866336878999999999999998750786432144001760031999
Q gi|254780190|r 120 GVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQ 199 (463)
Q Consensus 120 ~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~ 199 (463)
...|.| || +|+||||++|||++|.+... ...|.+.|..|.++|.++|++|++++|+||||+|+|+|+|||+
T Consensus 77 ~~~~~~--vH------~G~TsnDi~~Ta~~L~lr~~-~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~P~T~G~ 147 (381)
T cd01595 77 EDAGEY--VH------FGATSQDINDTALALQLRDA-LDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGK 147 (381)
T ss_pred HHCCCC--CC------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 021475--56------89758888879999999999-9999999999999999999981487110311367176664999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHH
Q ss_conf 99999999982289999978853006688701104544363557999999998608850764207887612412899899
Q gi|254780190|r 200 EFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHG 279 (463)
Q Consensus 200 ~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~ 279 (463)
+|++|+++|.|+++||..+++++..+++|| |+||+.+..+++.. +.+.+++.+||...+ ....+.+||+++++++
T Consensus 148 ~~~~~~~~l~r~~~rl~~~~~~~~~~~lgG-avGt~~~~~~~~~~-~~~~~a~~LGl~~~~---~~~~~~~rd~~~e~~~ 222 (381)
T cd01595 148 KFAVWAAELLRHLERLEEARERVLVGGISG-AVGTHASLGPKGPE-VEERVAEKLGLKVPP---ITTQIEPRDRIAELLS 222 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHCCCCCCCCHHH-HHHHHHHHHCCCCCC---CHHCCCCCHHHHHHHH
T ss_conf 999999999999999999999898725786-32011024996699-999999984899873---0320113379999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999876438887999999827733472167506--889875644554562467887652001210123555322345766
Q gi|254780190|r 280 AINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFE 357 (463)
Q Consensus 280 ~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lE 357 (463)
+|+.++++|+|||+||++|+ ++||||+.+| +.|+||||||||+||+.+|.+++.|.++.|+..++.. +....+|
T Consensus 223 ~l~~~~~~l~kia~Dl~~~~---~~e~gev~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~-~l~~~~e 298 (381)
T cd01595 223 ALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALE-NLVQWHE 298 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCC
T ss_conf 99999999999999999986---3104503136789998878888876868899999999999999999998-5420014
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCE--E----EECCHH-HHHHHHHHHHHHHHH
Q ss_conf 530023443224458999999999999998734900789999887439736--6----201105-538999999999998
Q gi|254780190|r 358 LNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLML--V----TALTSK-IGYDNASMIAKKAHH 430 (463)
Q Consensus 358 LNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~l--v----TaL~p~-iGy~~a~~iak~A~~ 430 (463)
.+...+.+-++++..+..+..++......|++||+||++||++|++.+.+. + +.|+++ |||..|+++++++.-
T Consensus 299 RD~~~~~~~~~~l~~~~~~~~~~l~~~~~ll~~l~vn~~~m~~nl~~~~g~i~ae~~~~~L~~~Gi~~~~Ah~iV~e~~~ 378 (381)
T cd01595 299 RDLSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKEENY 378 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 88740289998999999999999999999877499999999999872468779999999998839987789999999863
Q ss_pred CC
Q ss_conf 29
Q gi|254780190|r 431 NS 432 (463)
Q Consensus 431 ~g 432 (463)
.|
T Consensus 379 ~g 380 (381)
T cd01595 379 LG 380 (381)
T ss_pred CC
T ss_conf 47
No 22
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=509.55 Aligned_cols=398 Identities=19% Similarity=0.269 Sum_probs=323.8
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CH-HHCCCCCCCC
Q ss_conf 998876087788778999999999999999999998089998999999999999985874112650-02-2024210016
Q gi|254780190|r 26 AQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPL-VV-WQTGSGTQSN 103 (463)
Q Consensus 26 T~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv-~v-~q~GsGTs~n 103 (463)
+...++.|.-| ..++..+...=...-+|-|+...+.|+|+++.++.|.+++++|.+....+.|.+ +. ++
T Consensus 12 ~~~~~~~~~~S-i~~D~~L~~~Di~~s~AH~~mL~~~gil~~~e~~~I~~~L~~i~~~~~~g~~~~~~~~~E-------- 82 (455)
T PRK04833 12 ADQRFKQFNDS-LRFDYRLAEQDIVGSIAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDAE-------- 82 (455)
T ss_pred CCHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------
T ss_conf 45999987577-888999999999989999999998899899999999999999999998599103899975--------
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87305789999997323579864307446530125712344567899986633687899999999999999875078643
Q gi|254780190|r 104 MNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIK 183 (463)
Q Consensus 104 MN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~ 183 (463)
.+.+.|.++..|.+| +.|. .+| +||||||+++|++||.+...+ ..|.+.+..|+++|..+|++|.+++|
T Consensus 83 -DiH~~IE~~L~e~~G-~~gg--klH------tgRSRNDqv~t~~rL~~r~~l-~~l~~~l~~L~~~l~~~A~~~~~~im 151 (455)
T PRK04833 83 -DIHSWVEGKLIDKVG-DLGK--KLH------TGRSRNDQVATDLKLWCKDTV-SELLTANRQLQSALVETAENNQDAVM 151 (455)
T ss_pred -CHHHHHHHHHHHHHH-HHHH--HHH------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -548999999999974-3787--863------257788899999999999999-99999999999999999997669844
Q ss_pred CHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEECC
Q ss_conf 214400176003199999999999982289999978853006688701-1045443635579999999986088507642
Q gi|254780190|r 184 IGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGLPFITAP 262 (463)
Q Consensus 184 ~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl~~~~a~ 262 (463)
|||||+|+|||+||||||.+|+++|.||++||..++++++++|||++| +||+++.++. .+++++|+. .+..
T Consensus 152 pGyTHlQ~AqP~t~gh~l~a~~~~l~rd~~rL~~~~~r~n~~PLGa~A~aGT~~pidR~-------~~A~~LGF~-~~~~ 223 (455)
T PRK04833 152 PGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEIDRE-------QLAGWLGFA-SATR 223 (455)
T ss_pred CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHH-------HHHHHCCCC-CCCC
T ss_conf 37544543144109999999999999999999989987342754123216987666599-------999884998-6453
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 07887612412899899999876438887999999827733472167506-88987564455456246788765200121
Q gi|254780190|r 263 NKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIF 341 (463)
Q Consensus 263 n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~ 341 (463)
|+++++++||+++++.++++.++++|+|||+|+++|+|++ ||.+.|| +.++|||||||||||+++|.+++.|.+|+
T Consensus 224 Nsldavs~rD~~~e~~~~~a~~~~~LsRiaeDlil~ss~e---fg~i~l~d~~~tGSSIMPQKkNPd~lEliRgka~~v~ 300 (455)
T PRK04833 224 NSLDSVSDRDHVLELLSAASISMVHLSRFAEDLIFFNSGE---AGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQ 300 (455)
T ss_pred CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5799997432999999999999999999999999982567---8848727766787888755569738999987677886
Q ss_pred CHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEECCHH
Q ss_conf 01235553223------457665300234432244589999999999999987349007899998874397366201105
Q gi|254780190|r 342 GNHAAITFANS------QGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSK 415 (463)
Q Consensus 342 G~d~ti~~a~~------~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL~p~ 415 (463)
|+..++..... +-.+|. .+ ..++++++.+..++..+.. +++++++|++||++.+..++.++|.|+.+
T Consensus 301 G~l~~ll~~~k~lP~~ynrDlqe--dk----~~l~~a~~~~~~~l~l~~~-~i~~l~~n~~~~~~~~~~~~~~ATdlAd~ 373 (455)
T PRK04833 301 GALTGMLMTLKGLPLAYNKDMQE--DK----EGLFDALDTWLDCLHMAAL-VLDGIQVNRPRCQEAAQQGYANATELADY 373 (455)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHH--HH----HHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 79999999975898634431666--37----8899999999999999999-99863568178998761473309999999
Q ss_pred H---------HHHHHHHHHHHHHHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCC
Q ss_conf 5---------3899999999999829998999998----58999889998518898438
Q gi|254780190|r 416 I---------GYDNASMIAKKAHHNSTTLKEEAIA----SGLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 416 i---------Gy~~a~~iak~A~~~g~~l~e~~~~----~g~ls~~eld~lldP~~mt~ 461 (463)
+ .|+.+.++++.|.++|+++.++-.+ ..-+.++++.++|||++.+.
T Consensus 374 LV~~GvpFR~AH~ivg~lV~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~ld~~~~v~ 432 (455)
T PRK04833 374 LVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSAVIGDDVYPILSLQSCLD 432 (455)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCHHHHHHHCCHHHHHH
T ss_conf 99859988999999999999999839993549999999762013489998689999998
No 23
>PRK08937 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=487.73 Aligned_cols=390 Identities=22% Similarity=0.233 Sum_probs=309.3
Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HHHCCCCCCCCCCCHHHCC
Q ss_conf 217799887608778877899999999999999999999808999899999999999----9985874112650022024
Q gi|254780190|r 22 WGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE----EVINGKLDDHFPLVVWQTG 97 (463)
Q Consensus 22 yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~----ei~~g~~~d~Fpv~v~q~G 97 (463)
||.+.+|++ -+ +..-++.+..|..|.|+|+.++| ||++.++.|.++++ ++.+..-.
T Consensus 5 y~~~em~~i----~s----~~~~~~~~l~vE~ala~aq~~~G-Ip~~~~~~i~~~~~~d~~~~~~~e~~----------- 64 (425)
T PRK08937 5 YSSQEMSAI----WS----DENKFTTWLELEIAIAEAQAELG-IPKEDLESIREKAKFDIDRILEIEKE----------- 64 (425)
T ss_pred CCCHHHHHH----HC----HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCHHHHHHHHHH-----------
T ss_conf 287999988----09----28999999999999999998849-89999999998658999999999999-----------
Q ss_pred CCCCCCCCCHHHHHH-HH-HHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 210016873057899-99-9973235798643074465301257123445678999866336878999999999999998
Q gi|254780190|r 98 SGTQSNMNVNEVISN-RA-IEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKI 175 (463)
Q Consensus 98 sGTs~nMN~NEVIan-ra-~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka 175 (463)
++ +.|++- ++ .+.+|. -| .+|| +|.||||+++|+..+.+.. ..+.+.+.|..+.+.|.++|
T Consensus 65 ----~~---h~v~a~v~~l~~~~~~-~~--~~vH------~G~TSqDi~DTa~~l~l~~-a~~~l~~~l~~l~~~L~~la 127 (425)
T PRK08937 65 ----TR---HDVVAFIRALAEKLGE-DR--KFIH------YGLTSTDVVDTALAYLLKE-ALELIARELEAFIDGLAEDA 127 (425)
T ss_pred ----HC---CCCHHHHHHHHHHCCC-CC--CEEE------ECCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf ----69---7969999999986663-33--6135------2531663588999999999-99999999999999999999
Q ss_pred HHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 75078643214400176003199999999999982289999978853006688701104544363557999999998608
Q gi|254780190|r 176 SDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITG 255 (463)
Q Consensus 176 ~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tg 255 (463)
++|++++|+||||+|+|+|+|||++|++|++++.|+++||..+++++..+++|| ||||+.+..+ .+.+.+++.+|
T Consensus 128 ~~~~~t~m~grTh~Q~A~P~T~G~~~a~~~~~l~r~~~rl~~~~~~~~~~~~~G-avGt~~~~~~----~~~~~~a~~LG 202 (425)
T PRK08937 128 KEYKLLVMLGRTHGVHAEPTTLGIKIALWYQEMKRNLERLKEALDRLEVRKISG-AVGTYANLSD----LLEKYVALKLG 202 (425)
T ss_pred HHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCH----HHHHHHHHHCC
T ss_conf 985377423575378086765999999999999999999999998887634562-0120124688----99999998769
Q ss_pred CCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 85076420788761241289989999987643888799999982773347216750688987564455456246788765
Q gi|254780190|r 256 LPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQ 335 (463)
Q Consensus 256 l~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K~NPv~~E~i~~ 335 (463)
|+. ++..+.+.+||.++++.++|+.++++|.|||+||++|++ ++..+..+++.|+||||||||+||+.||.+.+
T Consensus 203 l~~---~~~~~~~~~Rd~~~e~~~~l~~~~~~l~kia~Di~~l~~---~ee~~e~~~~~~~GSS~MPhK~NPi~~E~~~~ 276 (425)
T PRK08937 203 LDP---DEISTQVLPRDRHLEYIVALAIIAASTEKFAREIRLLQR---SEEVEEGFNKGQKGSSAMPHKRNPIGSERVTG 276 (425)
T ss_pred CCC---CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999---987511403635999999999999899999999999957---89678746999987677785618588999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEE-----
Q ss_conf 200121012355532234576653002344322445899999999999999873490078999988743973662-----
Q gi|254780190|r 336 VCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVT----- 410 (463)
Q Consensus 336 ~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvT----- 410 (463)
.|.++.|+..++..+...+|-+++. ..+-+..+..+..+.+++.....+++++|+||+++|++|++.+.+++.
T Consensus 277 lar~~~~~~~~~~~~~~~~~ed~~~--~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~e~m~~nl~~~~g~i~ae~~~ 354 (425)
T PRK08937 277 LARVLRSYLATAAENVPLWHEDISH--SSAERIILPDAFLALDYALRRFSNLLDNLEVYPENMERNIRQEFGFIATQRVL 354 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999987689999987602634444--43567458999999999999999988774145999999999845678799999
Q ss_pred -ECCHH-HH----HHHHHHHHHHHHHCCCCHHHHHHHCC--CCCHHHHHHHCCHHHHCC
Q ss_conf -01105-53----89999999999982999899999858--999889998518898438
Q gi|254780190|r 411 -ALTSK-IG----YDNASMIAKKAHHNSTTLKEEAIASG--LISATEYDLIVKPEKMIY 461 (463)
Q Consensus 411 -aL~p~-iG----y~~a~~iak~A~~~g~~l~e~~~~~g--~ls~~eld~lldP~~mt~ 461 (463)
.|.+. +| |+.+++++++|.++|++|+|++.+.. .++++|||++|||++|+|
T Consensus 355 ~~l~~~glgr~~Ahe~v~~~a~~a~~~~~~l~e~l~~~~~~~ls~eeld~~ldP~~ylG 413 (425)
T PRK08937 355 LALVEKGLGREDAYELVQESAMESWQKQGDLRPLLHADKSIILSKEELEEAFDPKKFIG 413 (425)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHCCHHHHHC
T ss_conf 99987599979999999999999998798899999629988999999998719998866
No 24
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=479.78 Aligned_cols=409 Identities=22% Similarity=0.260 Sum_probs=307.6
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
Q ss_conf 63243217799887608778877899999999999999999999808999899999999999998587411265002202
Q gi|254780190|r 17 QEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQT 96 (463)
Q Consensus 17 p~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~ 96 (463)
|-|-=||-...|++ | |. ...|+++..|..|.|+++.++|++|++.++.|.++|+.- ..+ .+-+..
T Consensus 5 Pld~RY~~~em~~i--f--Se----~~~~~~~l~vE~ala~aq~~~g~ip~~a~~~i~~~~~~~---~~d----~~~i~~ 69 (451)
T PRK06390 5 PIEYRYGRDQVKYI--F--DD----ENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSN---SVR----LERVRE 69 (451)
T ss_pred CCCCCCCCHHHHHH--C--CH----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC---CCC----HHHHHH
T ss_conf 87866588999987--2--97----899999999999999999883999989999999975515---678----999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42100168730578999999732357986430744653012571234456789998663368789999999999999987
Q gi|254780190|r 97 GSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKIS 176 (463)
Q Consensus 97 GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~ 176 (463)
. -..||..|--++-.. .|.++. .+ .+|| +|.+|+|+.+||..|... +..+.+.+.+..+.+.|.++|.
T Consensus 70 ~-e~~t~hdv~a~v~~l-~e~~~~-~~--~~vH------~G~TSqDI~Dta~~L~lk-~a~~~i~~~l~~~~~~L~~lA~ 137 (451)
T PRK06390 70 I-ESEIKHDVMALVEAL-SEQCSA-GK--NYVH------FGVTSNDINDTATALQIH-DFVSIIKDDIKNLMETLIKLID 137 (451)
T ss_pred H-HHHCCCCCHHHHHHH-HHHCCC-CC--CEEE------CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9-756089859999999-986134-55--7465------175464257689999999-9999999999999999999999
Q ss_pred HCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 50786432144001760031999999999999822899999788530066887011045443635579999999986088
Q gi|254780190|r 177 DFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGL 256 (463)
Q Consensus 177 ~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl 256 (463)
+|++++|+||||+|+|+|+|||++|++|+++|.|+++||..+.+++..+++|| ||||+.+..+.+ ..+.+++++.+||
T Consensus 138 ~h~~t~m~gRTHgQ~A~PtTfG~k~a~w~~~l~r~~~rL~~~~~~~~~~~~~G-avGt~a~~~~~~-~~v~~~~~~~LgL 215 (451)
T PRK06390 138 EYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLG-PVGTGAALGKDA-LDIQNRVMEILGI 215 (451)
T ss_pred HHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHCCCCCH-HHHHHHHHHHHCC
T ss_conf 85168642310476214517999999999999999999999998898504466-565201038637-9999999998189
Q ss_pred CCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE---CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5076420788761241289989999987643888799999982773347216750---6889875644554562467887
Q gi|254780190|r 257 PFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELML---PENEPGSSIMPGKVNPTQCEAI 333 (463)
Q Consensus 257 ~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~l---p~~q~GSSiMP~K~NPv~~E~i 333 (463)
...+ ...++.+||.++++.++|+.++++|.|||+||++|+ |++++|+.. +..|+|||+||||+||+.||.+
T Consensus 216 ~~~~---~~tq~~~rd~~~e~~~~l~~i~~~l~kia~di~~l~---~~ei~Ev~E~f~~~~~~GSStMPhK~NPi~~E~i 289 (451)
T PRK06390 216 YSEI---GSTQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQ---RPEIDEVSEYFDEESQVGSSSMPSKVNPINSENV 289 (451)
T ss_pred CCCC---CCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9887---410001330999999999999899999999999986---6788899886033589877778876385878999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCE-----
Q ss_conf 652001210123555322345766530023443224458999999999999998734900789999887439736-----
Q gi|254780190|r 334 TQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLML----- 408 (463)
Q Consensus 334 ~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~l----- 408 (463)
.+.+..+.+.-.. .+.+....+|-...-.-+-+..+..+.++.+.+.....++++||+||+++|++|++.+..+
T Consensus 290 ~~la~~~~~~~~~-~~~~~~~~~ERDl~~s~~er~~lp~~~~l~~~~l~~~~~~l~~L~vn~e~m~~nL~~~~~i~sE~i 368 (451)
T PRK06390 290 VSLSRFIRSLIIP-EYEAGVTWHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESI 368 (451)
T ss_pred HHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHH
T ss_conf 9999999974788-876300200468723489998899999999999999998874688889999998864987489999
Q ss_pred EEECCHH-HH----HHHHHHHHHHHHHCCCCHHHHHHHCC---CCCHHHHHHHCCHHHHCC
Q ss_conf 6201105-53----89999999999982999899999858---999889998518898438
Q gi|254780190|r 409 VTALTSK-IG----YDNASMIAKKAHHNSTTLKEEAIASG---LISATEYDLIVKPEKMIY 461 (463)
Q Consensus 409 vTaL~p~-iG----y~~a~~iak~A~~~g~~l~e~~~~~g---~ls~~eld~lldP~~mt~ 461 (463)
++.|.++ +| |+.+.+++++|.++|++|+|++.+.+ +++++++|++|||++|+|
T Consensus 369 ~~~L~~~g~~r~~Ahe~v~~~~~~a~~~g~~l~e~l~~~~i~~~l~~~eld~~ldP~~YlG 429 (451)
T PRK06390 369 VRALTLSGMPRQDAHEFVRRASMEARSNGKSLKSSLIEAGILKYIDEKTLDRAMDPANFIG 429 (451)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHCCCHHHHHHCCCHHHHHH
T ss_conf 9999980998878999999999999985987899975060321499999987369888764
No 25
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=481.55 Aligned_cols=385 Identities=22% Similarity=0.243 Sum_probs=293.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHH--HHHHH
Q ss_conf 9999999999999999999980899989999999999999858741126500220242100168730578999--99973
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNR--AIEIL 118 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanr--a~e~~ 118 (463)
+...++++..|..|.|+|+.++|+||++.++.|.++|. ++.. .+-.--..| . +.|++-. ..+.+
T Consensus 16 d~~~~~~~l~vE~Ala~aqa~lG~IP~~aa~~I~~~~~------~d~~---~i~~~e~~~--~---h~v~a~v~~l~~~~ 81 (431)
T PRK07380 16 DTAKFQTWLDVEIAACEAQAELGKIPEEAVEEIKAKAN------FDPQ---RILEIEAEV--R---HDVIAFLTNVNEYV 81 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC------CCHH---HHHHHHHHH--C---CCCHHHHHHHHHHC
T ss_conf 38999999999999999998769999999999998669------9999---999999872--9---89799999999856
Q ss_pred CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHH
Q ss_conf 23579864307446530125712344567899986633687899999999999999875078643214400176003199
Q gi|254780190|r 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 (463)
Q Consensus 119 g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG 198 (463)
| +.| .+|| +|.||||+++||..|.+. +..+.+.+.|..+.++|.++|.+|++++|+||||+|+|+|||||
T Consensus 82 g-~~~--~~vH------~GaTSqDI~DTa~~L~lr-~al~~i~~~L~~l~~~L~~la~~~~~t~m~GRTh~q~A~PiTfG 151 (431)
T PRK07380 82 G-DAG--RYIH------LGMTSSDVLDTGLALQLK-ASVDLLLEELEDLIQAIRYLAREHRNTVMIGRSHGIHAEPITFG 151 (431)
T ss_pred C-CCC--CEEE------ECCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHH
T ss_conf 3-011--8255------486774378779999999-99999999999999999999998279743578634625115899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHH
Q ss_conf 99999999998228999997885300668870110454436355799999999860885076420788761241289989
Q gi|254780190|r 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCH 278 (463)
Q Consensus 199 ~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~ 278 (463)
++|++|.+++.|+++||..+++++..+++|| ||||..+..+ .+.+.+++.+||...+.. .++.+||.++|+.
T Consensus 152 ~k~a~w~~~l~r~~~RL~~~~~~~~~~~l~G-AvGt~a~~~~----~~e~~~~~~LgL~~~~~~---~q~~~Rd~~ae~~ 223 (431)
T PRK07380 152 FKLAGWLAETLRNRERLVRLREDVAVGQISG-AVGTYANTDP----RVEAITCQKLGLKPDTAS---TQVISRDRHAEYV 223 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCH----HHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHH
T ss_conf 9999999999999999999998531210131-1244220250----899999997699999986---7720719999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999876438887999999827733472167506--88987564455456246788765200121012355532234576
Q gi|254780190|r 279 GAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHF 356 (463)
Q Consensus 279 ~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~l 356 (463)
++|+.++++|.|||+|||+|+ |++++|+..| +.|.|||+||||+||+.||.+...+..+.|+-.++.-.... ..
T Consensus 224 ~~La~i~~~l~kia~di~~l~---~~ei~Ev~E~~~~gq~GSStMPhKrNPi~~E~i~~lar~~r~~~~~~l~~~~~-~h 299 (431)
T PRK07380 224 QTLALVGASLERFATEIRNLQ---RTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYVVAALENVAL-WH 299 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HC
T ss_conf 999999999999999999987---16863363156899891288785628588999999999888757889975088-60
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEE------EECCHH-HHHHHHHHHH----
Q ss_conf 65300234432244589999999999999987349007899998874397366------201105-5389999999----
Q gi|254780190|r 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------TALTSK-IGYDNASMIA---- 425 (463)
Q Consensus 357 ELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv------TaL~p~-iGy~~a~~ia---- 425 (463)
|-..----+-+..+..+.++.+++..-...+++||+||++||++|++.+.+++ .+|+++ +|++.|++++
T Consensus 300 ERD~~~s~~Er~~lp~~~~~~~~~l~~~~~ll~~L~V~~~~M~~Nl~~~~gli~se~vm~~L~~~g~gR~~Ah~~v~~~a 379 (431)
T PRK07380 300 ERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLGVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNA 379 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 67824345478678899999999999999986068897999999998827878999999999886998899999999999
Q ss_pred HHHH-HCCCCHHHHHHHC----CCCCHHHHHHHCCHHHHCC
Q ss_conf 9999-8299989999985----8999889998518898438
Q gi|254780190|r 426 KKAH-HNSTTLKEEAIAS----GLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 426 k~A~-~~g~~l~e~~~~~----g~ls~~eld~lldP~~mt~ 461 (463)
.+|+ ++|++|+|++.+. +++|++|+|++|||++|+|
T Consensus 380 ~~a~~~e~~~l~e~l~~d~~v~~~ls~~ei~~~~dP~~ylg 420 (431)
T PRK07380 380 HQAWNTEGGNFRANLEADPEVTALLSAEELADCFDPQLHLK 420 (431)
T ss_pred HHHHHHCCCCHHHHHHHCHHHHHHCCHHHHHHHHCHHHHHH
T ss_conf 99998649988999873969884199999998739898884
No 26
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=479.93 Aligned_cols=384 Identities=22% Similarity=0.253 Sum_probs=296.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHH-HHH-HHH
Q ss_conf 999999999999999999998089998999999999999985874112650022024210016873057899-999-973
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISN-RAI-EIL 118 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIan-ra~-e~~ 118 (463)
+...++.+..|..|.|+|+.++|+||++.++.|.++|+.. + |-++-+.-+. ..|+ +.|++- +++ +.+
T Consensus 16 ~~~~~~~~l~vE~ALa~Aqa~lGiIp~~aa~~I~~~~~~~---~----~d~~~i~~~e-~~~~---hdv~a~v~~l~~~~ 84 (433)
T PRK07492 16 PETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDA---E----FDVARIDEIE-AVTK---HDVIAFLTHLAEFV 84 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC---C----CCHHHHHHHH-HHHC---CCHHHHHHHHHHHC
T ss_conf 0799999999999999999986999999999999860225---7----8999999999-8849---98299999999864
Q ss_pred CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHH
Q ss_conf 23579864307446530125712344567899986633687899999999999999875078643214400176003199
Q gi|254780190|r 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 (463)
Q Consensus 119 g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG 198 (463)
|.. + .+|| +|.||||+++|+..|.+. +..+.+.+.|..|.++|.++|.+|++++|+||||+|+|+|||||
T Consensus 85 g~~-a--~~vH------~GaTSqDi~DTa~~L~lk-~a~~~i~~~l~~l~~~L~~lA~~~~~t~m~GRTh~Q~A~P~TfG 154 (433)
T PRK07492 85 GPD-A--RFVH------QGMTSSDVLDTCLNVQLV-RAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFG 154 (433)
T ss_pred CCC-C--CEEE------ECCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH
T ss_conf 700-0--4134------353178688649999999-99999999999999999999998556756688657831001799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHH
Q ss_conf 99999999998228999997885300668870110454436355799999999860885076420788761241289989
Q gi|254780190|r 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCH 278 (463)
Q Consensus 199 ~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~ 278 (463)
++|++|.+++.|+++||..+++++..+++|| ||||..+..+ .+.+.+++.+||...+.. .++.+||+++++.
T Consensus 155 ~k~a~w~~~l~r~~~RL~~~~~~~~~~~l~G-AvGt~a~~~~----~v~~~~a~~LGL~~~~~~---~q~~~RD~~~e~~ 226 (433)
T PRK07492 155 LKLARFYAEFSRNRERLVAAREEIATCAISG-AVGTFANIDP----RVEEHVAKKLGLKPEPVS---TQVIPRDRHAMFF 226 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCH----HHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHH
T ss_conf 9999999999999999999998751011144-0136656888----999999886188889876---6656425799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999876438887999999827733472167506--88987564455456246788765200121012355532234576
Q gi|254780190|r 279 GAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHF 356 (463)
Q Consensus 279 ~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~l 356 (463)
++|+.++++|+|||+|||+|+ |+|++|+..| +.|.|||+||||+||+.+|.+...+..|.|+..+. +.+..-..
T Consensus 227 ~~La~i~~~l~kia~di~~l~---~~ei~Ev~E~f~~gq~GSSaMPhKrNPv~~E~i~~lar~v~~~~~~~-~~~~~~~h 302 (433)
T PRK07492 227 ATLGVIASSIERLAIEIRHLQ---RTEVLEAEEYFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVIPA-MENVALWH 302 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 999999987999999999988---66677887214689987666885638499999999999998767789-88627764
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEE------EECCHH-HHHHHHHHHH
Q ss_conf 6530----0234432244589999999999999987349007899998874397366------201105-5389999999
Q gi|254780190|r 357 ELNV----YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------TALTSK-IGYDNASMIA 425 (463)
Q Consensus 357 ELNv----~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv------TaL~p~-iGy~~a~~ia 425 (463)
|-.. .+- ..+.+++.++..++.. ...+++||+||++||++|++.+.+++ -+|+++ +|++.|++++
T Consensus 303 ERd~~~s~~er---~~lpd~~~~~~~~l~~-~~~ll~~L~V~~~rM~~Nl~~~~g~i~se~v~~~L~~~g~gR~~Ah~~V 378 (433)
T PRK07492 303 ERDISHSSVER---MIGPDATITLDFALNR-LAGVIEKLVVYPENMLKNLNKLGGLVHSQRVLLALTQAGVSREDAYRLV 378 (433)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 20153537788---8877799999999999-9986641478799999999880687799999999988699889999999
Q ss_pred ----HHHHHCCCCHHHHHHHC----CCCCHHHHHHHCCHHHHCC
Q ss_conf ----99998299989999985----8999889998518898438
Q gi|254780190|r 426 ----KKAHHNSTTLKEEAIAS----GLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 426 ----k~A~~~g~~l~e~~~~~----g~ls~~eld~lldP~~mt~ 461 (463)
.+|.++|++|+|++.+. ++++++|+|++|||.+|++
T Consensus 379 ~~~a~~a~~~~~~l~e~l~~d~~v~~~l~~~el~~~~dp~~yl~ 422 (433)
T PRK07492 379 QRNAMKVWEQGGDFLEELKADPEVRAALSEEEIEELFDLGYHTK 422 (433)
T ss_pred HHHHHHHHHHCCCHHHHHHCCHHHHHHCCHHHHHHHHCHHHHHH
T ss_conf 99999999879799999871969884099999998719799998
No 27
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=473.78 Aligned_cols=385 Identities=17% Similarity=0.207 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999980899989999999999999858741126500220242100168730578999999732357
Q gi|254780190|r 43 VIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVM 122 (463)
Q Consensus 43 ~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~ 122 (463)
.++..|-.|-+|-+.-=.+.|+|+++.++.|.++.++| +..-.+.|..++ +--..+|| |.++..+.+|++.
T Consensus 36 ~l~~~~~~in~AH~~ML~~~gIi~~~ea~~I~~gL~~i-~~~~~~~~~~~~----~~EDih~~----iE~~L~~~~ggd~ 106 (502)
T PRK06705 36 YLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKV-EEIPEEQLLYTE----QHEDLFFL----VEHLISQEAKSDF 106 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCC----CCHHHHHH----HHHHHHHHHCCCC
T ss_conf 98898988999999999887998999999999999999-876539952699----63205899----9999999847451
Q ss_pred CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHH
Q ss_conf 98643074465301257123445678999866336878999999999999998750786432144001760031999999
Q gi|254780190|r 123 GSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFS 202 (463)
Q Consensus 123 g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~ 202 (463)
|. .+| +|+||||++.|++||.+..++ ..+...+..|+++|.++|++|.+++||||||+|+|||+||||++.
T Consensus 107 gg--klH------tgRSRNDqvat~~Rl~~R~~l-~~i~~~l~~l~~~l~~~A~~~~~timPgYTHlQ~AQP~t~gh~l~ 177 (502)
T PRK06705 107 VS--NMH------IGRSRNDMGVTMYRMSLRRYV-LRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHYTL 177 (502)
T ss_pred CC--CCC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHH
T ss_conf 03--155------547888999999999999999-999999999999999999975686323644463110106989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999982289999978853006688701-10454436355799999999860885076420788761241289989999
Q gi|254780190|r 203 GYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAI 281 (463)
Q Consensus 203 ~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L 281 (463)
+|+++|.||.+||..++++++.+|||++| .||++..++ +.+++++|+. .+..|+++++++||+++|+.+++
T Consensus 178 a~~~~l~RD~~Rl~~~~~r~n~sPLGa~AlaGt~~piDR-------~~~A~lLGF~-~~~~NS~davs~rD~~~e~~~~~ 249 (502)
T PRK06705 178 AIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFPIKR-------ERVADLLGFT-NVIENSYDAVAGADYLLEVSSLL 249 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCH-------HHHHHHCCCC-CCCCCHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999999999850487310012578887788-------9999877999-87600399886336999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----
Q ss_conf 9876438887999999827733472167506-88987564455456246788765200121012355532234576----
Q gi|254780190|r 282 NTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHF---- 356 (463)
Q Consensus 282 ~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~l---- 356 (463)
+.++++|+|||+|+.+|+| .+||.|.+| +...||||||||+||+.+|.+++.+.+|+|+..++.....+-.+
T Consensus 250 s~~~~~LsRlaedlilwss---~Ef~fi~l~d~~~tgSSIMPQKkNPd~lEliRgkag~v~G~l~~ll~~~kglP~~yn~ 326 (502)
T PRK06705 250 MVMMTNTSRWIHDFLLLAT---KEYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIV 326 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9998779999999999971---1579487078655666778867698389999999888888999999997589852242
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEECCHHH----------HHHHHHHHH
Q ss_conf 653-002344322445899999999999999873490078999988743973662011055----------389999999
Q gi|254780190|r 357 ELN-VYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI----------GYDNASMIA 425 (463)
Q Consensus 357 ELN-v~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL~p~i----------Gy~~a~~ia 425 (463)
++. -.+|. ++++++.+..++..++. +++++++|+++|++.+..+++++|.|++++ .|+.+.+++
T Consensus 327 D~qed~~~~----l~~a~~~~~~~l~l~~~-~i~~l~~n~~~m~~~~~~~~~~ATdlAD~LVr~~gipFR~AH~ivg~~V 401 (502)
T PRK06705 327 DTEDDLQPY----LYKGIEKAIRVFCIMNA-VIRTMKVEEDTLKRRSYKHAITITDFADVLTKNYGIPFRHAHHAASVIA 401 (502)
T ss_pred CHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHCEECHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 003120157----89999999999999999-8853803799999987549713999999999835989889999999999
Q ss_pred HHHHHCCCCHHHHHHH-------CC---CCCHHHHHHHCCHHHHCC
Q ss_conf 9999829998999998-------58---999889998518898438
Q gi|254780190|r 426 KKAHHNSTTLKEEAIA-------SG---LISATEYDLIVKPEKMIY 461 (463)
Q Consensus 426 k~A~~~g~~l~e~~~~-------~g---~ls~~eld~lldP~~mt~ 461 (463)
+.|.++|+++.|+.++ .+ -++++++.+.|||++.+.
T Consensus 402 ~~a~~~~~~l~~l~~~~~~~~~~~~~~~~l~e~~i~~aLdp~~~V~ 447 (502)
T PRK06705 402 NMSLEQKKELHELCFKDVNIYLQEKFKIQLLEKEWEEIISPEAFIQ 447 (502)
T ss_pred HHHHHCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHH
T ss_conf 9999759991328999999998740467989999998669999998
No 28
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=470.01 Aligned_cols=402 Identities=22% Similarity=0.303 Sum_probs=329.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC
Q ss_conf 32432177998876087788778999999999999999999998089998999999999999985874112650022024
Q gi|254780190|r 18 EDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTG 97 (463)
Q Consensus 18 ~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~G 97 (463)
..+++|..-.. +..|..| ..+...+...=...-.|-+....+.|+|+++.++.|.++..+|.+.....+|.+++=
T Consensus 7 ggRf~~~~~~~-~~~~~~S-i~~D~~l~~~di~~s~Ah~~mL~~~Gii~~ee~~~Il~~L~~l~~e~~~g~~~~~~~--- 81 (459)
T COG0165 7 GGRFSGGPDPL-VKEFNAS-ISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPD--- 81 (459)
T ss_pred CCCCCCCCCHH-HHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_conf 88766787679-9998245-026799999999875999999998699889999999999999999875488657986---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21001687305789999997323579864307446530125712344567899986633687899999999999999875
Q gi|254780190|r 98 SGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISD 177 (463)
Q Consensus 98 sGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~ 177 (463)
---.||| |.++..+++| +.|. .+| .|+||||++.|++||++..++ ..|...+..|+++|.++|++
T Consensus 82 -~EDvH~a----iE~~L~~~iG-~~gg--kLh------tgRSRNDQVatd~rL~lr~~~-~~l~~~i~~l~~aL~~~Ae~ 146 (459)
T COG0165 82 -DEDVHTA----IEARLIERIG-DVGG--KLH------TGRSRNDQVATDLRLWLRDKL-LELLELIRILQKALLDLAEE 146 (459)
T ss_pred -CCCHHHH----HHHHHHHHHH-HHHC--HHC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf -0108999----9999999974-4222--000------245633899999999999999-99999999999999999998
Q ss_pred CCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 078643214400176003199999999999982289999978853006688701-1045443635579999999986088
Q gi|254780190|r 178 FQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGL 256 (463)
Q Consensus 178 ~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl 256 (463)
|.+++||||||+|+|||+||||++.+|+++|.||++|+..++++++.+|||.+| .||++..++. ..++++|+
T Consensus 147 ~~~~imPGyTHlQ~AQPvtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~iDR~-------~tA~lLGF 219 (459)
T COG0165 147 HAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPIDRE-------RTAELLGF 219 (459)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-------HHHHHCCC
T ss_conf 06874678544653576849999999999999899999999987435986434567899988989-------99988398
Q ss_pred CCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50764207887612412899899999876438887999999827733472167506-88987564455456246788765
Q gi|254780190|r 257 PFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQ 335 (463)
Q Consensus 257 ~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~ 335 (463)
. .+..|+++++++||+.+|+.++++.++++|+|+|.|+.+|+| .+||.|.|| +...||||||||+||+.+|++++
T Consensus 220 ~-~~~~Nsldavs~Rdf~le~l~~~a~~~~~LSRlaedlI~wss---~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELiRg 295 (459)
T COG0165 220 D-AVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSS---PEFGFIELPDEFSTGSSIMPQKKNPDVLELIRG 295 (459)
T ss_pred C-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 1-332173456652799999999999999999999999998705---467627678555556666888889868999877
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCC
Q ss_conf 200121012355532234576653002344322---------44589999999999999987349007899998874397
Q gi|254780190|r 336 VCAHIFGNHAAITFANSQGHFELNVYKPMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSL 406 (463)
Q Consensus 336 ~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~---------ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~ 406 (463)
.+.+|+|+-.+......+ +|+ +|| ++++++.+.+++..|+. ++++|++|+|+|++.+..++
T Consensus 296 k~grv~G~l~~ll~~~k~--------lPl-aYnrDlQedke~lfds~~t~~~~l~~~~~-mv~~l~vn~e~~~~a~~~gf 365 (459)
T COG0165 296 KAGRVIGALTGLLTIMKG--------LPL-AYNRDLQEDKEPLFDSVDTLEDSLRVLAG-MVSGLTVNKERMREAAEAGF 365 (459)
T ss_pred HHHHHHHHHHHHHHHHHC--------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECHHHHHHHHHCCC
T ss_conf 554269899999999806--------865-12477786338899999999999999999-87217457888998764362
Q ss_pred CEEEECCHHH---H------HHHHHHHHHHHHHCCCCHHHHHHHC----CCCCHHHHHHHCCHHHHC
Q ss_conf 3662011055---3------8999999999998299989999985----899988999851889843
Q gi|254780190|r 407 MLVTALTSKI---G------YDNASMIAKKAHHNSTTLKEEAIAS----GLISATEYDLIVKPEKMI 460 (463)
Q Consensus 407 ~lvTaL~p~i---G------y~~a~~iak~A~~~g~~l~e~~~~~----g~ls~~eld~lldP~~mt 460 (463)
+++|.|++++ | |+.+.++++++.+.|++|.++.++. .-+-.+++-++|+|+.-+
T Consensus 366 s~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v 432 (459)
T COG0165 366 STATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESV 432 (459)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCCHHHHHHHCHHHHH
T ss_conf 0589999999876998799999999999999874998775027888631322116899984669999
No 29
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=470.52 Aligned_cols=377 Identities=22% Similarity=0.233 Sum_probs=288.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHH-H-HHHH
Q ss_conf 9999999999999999999980899989999999999999858741126500220242100168730578999-9-9973
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNR-A-IEIL 118 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanr-a-~e~~ 118 (463)
+..-++++..|..|.|+|+.++|+||++.++.|.+.+. ++ +-.+-.--+.| . +.||+-. + .+.+
T Consensus 16 ~e~~~~~~l~vE~ala~Aqa~lG~IP~~aa~~I~~~~~------~d---~~~i~~~e~~t--~---hdvia~v~~l~~~~ 81 (442)
T PRK08470 16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAK------FD---IARIDEIEKTT--K---HDLIAFLTSVSESL 81 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC------CC---HHHHHHHHHHH--C---CCHHHHHHHHHHHC
T ss_conf 38999999999999999998769999999999998579------99---99999999985--9---98299999999856
Q ss_pred CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHH
Q ss_conf 23579864307446530125712344567899986633687899999999999999875078643214400176003199
Q gi|254780190|r 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 (463)
Q Consensus 119 g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG 198 (463)
|.. + .+|| +|.||||+++|++.|... +..+.+++.|..|.++|.++|.+|++++|+||||+|+|+|||||
T Consensus 82 g~~-~--~~vH------~GaTSqDi~DTa~~L~lk-~al~~i~~~l~~l~~~L~~lA~~~k~t~m~GRTh~q~A~PiTfG 151 (442)
T PRK08470 82 GEE-S--RFVH------YGMTSSDCIDTAVALQMK-DSLKLIIEDVKNLMEAIKKRALEHKNTLMVGRSHGIHGEPITFG 151 (442)
T ss_pred CCC-C--CCCC------CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHH
T ss_conf 612-2--7001------485786499999999999-99999999999999999999998566735551065654046778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHH
Q ss_conf 99999999998228999997885300668870110454436355799999999860885076420788761241289989
Q gi|254780190|r 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCH 278 (463)
Q Consensus 199 ~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~ 278 (463)
++|++|+++|.|+++||..+++++..+++|| ||||..+.++ .+.+.+++.+||...|.. .++.+||.++++.
T Consensus 152 ~k~a~w~~~l~r~~~rL~~~~~~~~~g~~~G-AvGt~a~~~~----~v~~~~a~~LGL~~~p~~---~q~~~Rd~~ae~~ 223 (442)
T PRK08470 152 LVLAIWYDEIKRHLKLLEHTMEVISVGKISG-AMGNFAHAPL----ELEELVCEELGLKPAPVS---NQVIQRDRYARLA 223 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCH----HHHHHHHHHCCCCCCCCC---CCHHCCHHHHHHH
T ss_conf 9999998998889999999987642022011-2144577857----999999996899988752---3020210899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q ss_conf 9999876438887999999827733472167506--88987564455456246788765200121012355532234---
Q gi|254780190|r 279 GAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQ--- 353 (463)
Q Consensus 279 ~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~--- 353 (463)
++|+.++++|.|||+|||+|+ |++++|+..| ..|.|||+||||+||+.||.+...|..+.|+..+..-....
T Consensus 224 ~~La~ia~sl~Kia~di~~l~---~tev~Ev~E~f~~gq~GSSaMPhKrNPi~~E~i~~lar~~r~~~~~~~e~~~~~hE 300 (442)
T PRK08470 224 SALALLASSCEKIAVNIRHLQ---RTEVYEAEEYFSPGQKGSSAMPHKRNPVLSENITGLCRVIRSFVTPALENVALWHE 300 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999988999999999861---25632452356898985377885507498999999998778767899986178627
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEE------EECCHH-HHHHHH
Q ss_conf -----57665300234432244589999999999999987349007899998874397366------201105-538999
Q gi|254780190|r 354 -----GHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------TALTSK-IGYDNA 421 (463)
Q Consensus 354 -----G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv------TaL~p~-iGy~~a 421 (463)
.+.|+ ..+-+++. +.+.+-....++++||+||++||++|++.+.+++ .+|+.+ +|++.|
T Consensus 301 Rd~~~s~~Er--------~~lpd~~~-l~~~~l~~~~~vl~~L~V~~~rM~~NL~~t~gli~se~vm~~L~~~G~~R~~A 371 (442)
T PRK08470 301 RDISHSSVER--------FILPDAFI-TADFMLSRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDA 371 (442)
T ss_pred CCCCHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 6874017688--------78999999-99999999998760378868999999998668279999999998879999999
Q ss_pred HHHHH----HHHHC-----------CC-CHHHHHHH----CCCCCHHHHHHHCCHHHHCC
Q ss_conf 99999----99982-----------99-98999998----58999889998518898438
Q gi|254780190|r 422 SMIAK----KAHHN-----------ST-TLKEEAIA----SGLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 422 ~~iak----~A~~~-----------g~-~l~e~~~~----~g~ls~~eld~lldP~~mt~ 461 (463)
+++++ +++++ |. .|+|++++ ..+||++|+|++|||..|++
T Consensus 372 h~~V~~~a~~~~~~~~~~~~~~~~~~~~~f~~~l~~d~~v~~~ls~~el~~l~dp~~yl~ 431 (442)
T PRK08470 372 YKIVQRNAMKVWEDLQQGKAAINEKGESLFLQALLNDEELRKSLSEEEIRACFDYSYYTK 431 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCCCHHHHHHHHCHHHHHH
T ss_conf 999999999999975411034420243058999874979880399999998719899987
No 30
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=0 Score=469.20 Aligned_cols=394 Identities=20% Similarity=0.280 Sum_probs=315.9
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHCCCCCCCC
Q ss_conf 7998876087788778999999999999999999998089998999999999999985874112-650022024210016
Q gi|254780190|r 25 QAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDH-FPLVVWQTGSGTQSN 103 (463)
Q Consensus 25 qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~-Fpv~v~q~GsGTs~n 103 (463)
.|-..++.|.-| ..++..+.+-=..--.|-|+.-.+.|+|+++.++.|.++.++|......+. |+.+. .---.|
T Consensus 11 ~~~~~~~~fn~S-i~fD~rL~~~DI~gSiAHa~mL~~~gIlt~~E~~~I~~gL~~I~~ei~~~~~~~~~~----~~EDIH 85 (614)
T PRK12308 11 AADTRFKQFNDS-LRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLS----DAEDIH 85 (614)
T ss_pred CCCHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCH
T ss_conf 713999986687-778899999998777999999987799899999999999999999998399335899----853440
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87305789999997323579864307446530125712344567899986633687899999999999999875078643
Q gi|254780190|r 104 MNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIK 183 (463)
Q Consensus 104 MN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~ 183 (463)
|| |..+..|++| +.|. .+| .|+|+||++.|++||.+..++ ..+...|..|+++|.++|++|.+++|
T Consensus 86 ~~----IE~~L~e~iG-~~G~--KLH------TgRSRNDQVatd~RL~~r~~~-~~i~~~l~~L~~~l~~~Ae~~~~~iM 151 (614)
T PRK12308 86 SW----VEQQLIGKVG-DLGK--KLH------TGRSRNDQVATDLKLWCRQQG-QQLLLALDQLQQQMVNVAERHQGTVL 151 (614)
T ss_pred HH----HHHHHHHHHH-HHHC--CHH------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89----9999999861-5446--210------246789999999999999999-99999999999999999997679825
Q ss_pred CHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEECC
Q ss_conf 214400176003199999999999982289999978853006688701-1045443635579999999986088507642
Q gi|254780190|r 184 IGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGLPFITAP 262 (463)
Q Consensus 184 ~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl~~~~a~ 262 (463)
|||||+|+|||+||||++.+|+++|.||.+||..++++++.+|||++| +||.+..++. .+++.+|+. .+.+
T Consensus 152 PGYTHLQ~AQPvt~~H~llAy~e~l~RD~~RL~d~~~r~n~~PLGsgAlAGT~~pIDR~-------~tA~~LGF~-~~~~ 223 (614)
T PRK12308 152 PGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDRE-------ALAHNLGFR-RATR 223 (614)
T ss_pred CCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-------HHHHHCCCC-CCCC
T ss_conf 78656644211139999999999999999999999998575975431346898987999-------999975999-8667
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 07887612412899899999876438887999999827733472167506-88987564455456246788765200121
Q gi|254780190|r 263 NKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIF 341 (463)
Q Consensus 263 n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~ 341 (463)
|+++++++||+.+|+.++++.++++|+|+|.|+.+|+| .+||.|.|| +..+||||||||+||+.+|.+++.+.+|+
T Consensus 224 NSlDAVSdRDf~~E~l~~~s~~m~hLSRlaEdlIlwsS---~EFgfi~L~D~~sTGSSIMPQKKNPDv~ELiRGK~Grv~ 300 (614)
T PRK12308 224 NSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNS---GESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVY 300 (614)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 88889872589999999999999999999999999837---036848706655445555777779868999887753245
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEEC
Q ss_conf 012355532234576653002344322---------44589999999999999987349007899998874397366201
Q gi|254780190|r 342 GNHAAITFANSQGHFELNVYKPMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTAL 412 (463)
Q Consensus 342 G~d~ti~~a~~~G~lELNv~~Plia~~---------ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL 412 (463)
|+-.++...-. | +|+ +|| ++++++.+..++..++. ++.++++|+++|++.+..+++++|.|
T Consensus 301 G~L~~lLt~mK-g-------LPl-aYNkDlQEDKe~lfda~dt~~~~l~~~~~-m~~~l~~n~e~m~~aa~~gf~~ATdl 370 (614)
T PRK12308 301 GALAGMMMTVK-A-------LPL-AYNKDMQEDKEGLFDALDTWNDCMEMAAL-CFDGIKVNGERTLEAAKQGYANATEL 370 (614)
T ss_pred HHHHHHHHHHC-C-------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCEECHHHHHHHHHCCCCHHHHH
T ss_conf 38999999976-6-------842-11314320017877689999999999999-87438378999998853585028999
Q ss_pred CHHH---H------HHHHHHHHHHHHHCCCCHHHHHHHC-----CCCCHHHHHHHCCHHHH
Q ss_conf 1055---3------8999999999998299989999985-----89998899985188984
Q gi|254780190|r 413 TSKI---G------YDNASMIAKKAHHNSTTLKEEAIAS-----GLISATEYDLIVKPEKM 459 (463)
Q Consensus 413 ~p~i---G------y~~a~~iak~A~~~g~~l~e~~~~~-----g~ls~~eld~lldP~~m 459 (463)
++++ | |+.+.++++.|.++|++|.|+-++. ..+++ ++-++|+.+.-
T Consensus 371 ADyLV~kGvPFReAH~ivG~~V~~a~~~g~~L~~L~L~e~q~~s~~i~~-DVy~~L~~e~~ 430 (614)
T PRK12308 371 ADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIED-DVYQILTIESC 430 (614)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCHHHHH-HHHHHCCHHHH
T ss_conf 9999987997888899999999999981997000889999875602236-79887089989
No 31
>TIGR00928 purB adenylosuccinate lyase; InterPro: IPR004769 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Adenylosuccinate lyase is involved in purine ribonucleotide biosynthesis.; GO: 0004018 adenylosuccinate lyase activity, 0009152 purine ribonucleotide biosynthetic process.
Probab=100.00 E-value=0 Score=462.54 Aligned_cols=385 Identities=25% Similarity=0.298 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH--H----------HHHHC-CCCCCCCCCCHHHCCCCCC
Q ss_conf 9999999999999999999808-------9998999999999--9----------99985-8741126500220242100
Q gi|254780190|r 42 LVIIRALGIIKQAAARVNIELG-------KLDPKIGEAIVKA--S----------EEVIN-GKLDDHFPLVVWQTGSGTQ 101 (463)
Q Consensus 42 ~~~i~a~~~vK~AaA~an~~~G-------~l~~~~a~aI~~a--~----------~ei~~-g~~~d~Fpv~v~q~GsGTs 101 (463)
..-+..+..|..|.++|..++| .++++.++.|.+- + .||.. -+||
T Consensus 19 ~~k~~~~l~VE~a~~~A~a~lGP~I~~v~~i~~~~~~~~~~k~~a~~~~~~~~rikeIE~~t~HD--------------- 83 (469)
T TIGR00928 19 ENKFKKWLDVEVALLRALAELGPVITEVPVIPAEAAKEIKEKIVASFDDVDLERIKEIEAVTKHD--------------- 83 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCH---------------
T ss_conf 78999999999999999741087301046643889999857952631456688687763232452---------------
Q ss_pred CCCCCHHHHHH-HH-HHHHC-----CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16873057899-99-99732-----3579864307446530125712344567899986633687899999999999999
Q gi|254780190|r 102 SNMNVNEVISN-RA-IEILG-----GVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKK 174 (463)
Q Consensus 102 ~nMN~NEVIan-ra-~e~~g-----~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~k 174 (463)
|+|- .+ .|.+| +.-| .+|| +|.||||+++||..|-......+.+++.+++|++.|.+|
T Consensus 84 -------v~A~~~~l~E~~~~~~eL~~~~--~~iH------~G~TS~Di~Dta~aLllr~s~~~ii~~~l~~l~~~L~~~ 148 (469)
T TIGR00928 84 -------VKAVVKALAEKCGEAVELGAEG--EYIH------FGATSNDIVDTALALLLRDSRLEIILPKLKKLIDILKDK 148 (469)
T ss_pred -------HHHHHHHHHHHHHHHCCHHHCC--EEEE------ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------9989989977400000322235--0153------146444488878999999989998799999999999997
Q ss_pred HHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCH------HHHHH
Q ss_conf 875078643214400176003199999999999982289999978853006688701104544363557------99999
Q gi|254780190|r 175 ISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFA------EKVAQ 248 (463)
Q Consensus 175 a~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~------~~~~~ 248 (463)
|.+|+|+||+||||+|||+|+|||.+|+.|++++.|+++||.++.+++....+-| |+||..+.++.+. ..+-+
T Consensus 149 A~e~kd~~m~GRTHGq~A~PtT~G~~~A~w~~E~~R~~~rL~~~~~~~~vg~i~G-a~GT~a~~~~~~~G~~~~~~~~E~ 227 (469)
T TIGR00928 149 AEEHKDTVMLGRTHGQHAEPTTLGKKFALWADEMKRQLERLKQAKERIKVGGISG-AVGTYAAAGPLGDGDRDWLEEVEE 227 (469)
T ss_pred HHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 6530967884135782434486999999999999999999998886166574225-421476234457885799999999
Q ss_pred HHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC---CCCCCCCCCCCCC
Q ss_conf 9998608850764207887612412899899999876438887999999827733472167506---8898756445545
Q gi|254780190|r 249 NIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP---ENEPGSSIMPGKV 325 (463)
Q Consensus 249 ~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp---~~q~GSSiMP~K~ 325 (463)
.+++.+||...+..| -.+-+||.++++...|+.+|++|.|||.|||.|+ |+++.|+..| +.|.|||+|||||
T Consensus 228 ~V~~~LGL~~~~~st--GQi~~RD~~a~~~~~LA~lA~~l~k~A~~iR~lq---~~e~~ev~E~F~P~gQ~GSSaMPHKr 302 (469)
T TIGR00928 228 RVTELLGLKPVPIST--GQIIQRDRHAELLDALALLAATLEKFAVEIRLLQ---RTEVLEVEEKFGPKGQVGSSAMPHKR 302 (469)
T ss_pred HHHHHCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH---CCCCHHEECCCCCCCCCCCCCCCCCC
T ss_conf 999870872256747--6200004568999999886048668647889976---03620111024688887777888999
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCC
Q ss_conf 62467887652001210123555322345766530023443224458999999999999998734900789999887439
Q gi|254780190|r 326 NPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRS 405 (463)
Q Consensus 326 NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s 405 (463)
||+.||.+.+.|.-+-|+-.....-...-.+|-...-.-.=.+.|-...++++-+-....+.|++|.||+++|++||+.+
T Consensus 303 NPI~~E~~~GlaRv~r~~~~~~~~~~p~lW~ERDlt~SsveR~~Lp~~~~~~d~~L~~~~~~~~~L~vypeni~rnL~~~ 382 (469)
T TIGR00928 303 NPIDSERVCGLARVIRSYVIPALENVPVLWHERDLTDSSVERVILPDSFILADIILKTLLKVVKKLVVYPENIKRNLELT 382 (469)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf 88416556579999999999999708985002531111367888658999999999998756750340688999873002
Q ss_pred CCEEE------ECC-HHHHHHHHHHH----HHHHHH------CCCCHHHHHHHC----CCCCHHHHHHHCCHHHHCCC
Q ss_conf 73662------011-05538999999----999998------299989999985----89998899985188984388
Q gi|254780190|r 406 LMLVT------ALT-SKIGYDNASMI----AKKAHH------NSTTLKEEAIAS----GLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 406 ~~lvT------aL~-p~iGy~~a~~i----ak~A~~------~g~~l~e~~~~~----g~ls~~eld~lldP~~mt~P 462 (463)
.+++- +|. .-+||+.|+++ |++|++ ++.+|+|.+.+. .+++++|+++++||++|+|-
T Consensus 383 ~gl~~~~~vl~~lv~~G~gRe~aye~v~~~A~~a~~v~~e~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~P~~y~G~ 460 (469)
T TIGR00928 383 LGLIASERVLIALVERGMGREEAYEIVRELAMKAAEVLKEEVEERDLLEFLLEDEEITKYLTEEELAELLDPETYIGN 460 (469)
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCC
T ss_conf 660022589999963158850168999999999999997316723689999727456612586899985093665144
No 32
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase_2: Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=0 Score=451.04 Aligned_cols=381 Identities=19% Similarity=0.166 Sum_probs=285.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHH-HHH-HHH
Q ss_conf 999999999999999999998089-99899999999999998587411265002202421001687305789-999-997
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELGK-LDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVIS-NRA-IEI 117 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G~-l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIa-nra-~e~ 117 (463)
+...++.+..|..|.|+|+.++|+ +|++.++.|...++.+ -++-..-.- ..|+. .|+| -++ .+.
T Consensus 16 ~e~~~~~~l~vE~ala~aqaelGi~i~~~a~~~i~a~~~~~---------d~~~i~~~e-~~t~H---dv~a~v~~l~~~ 82 (436)
T cd03302 16 PRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENI---------DFEIAAAEE-KKLRH---DVMAHVHAFGLL 82 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC---------CHHHHHHHH-HHHCC---CCHHHHHHHHHH
T ss_conf 46999999999999999999829999999999999705448---------999999999-77198---948999999985
Q ss_pred HCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCH
Q ss_conf 32357986430744653012571234456789998663368789999999999999987507864321440017600319
Q gi|254780190|r 118 LGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTL 197 (463)
Q Consensus 118 ~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTl 197 (463)
.|. .+ .+|| +|.+|+|+++||..|.+.. ..+.+++.|..+.++|.++|.+|++++|+||||+|+|+|+||
T Consensus 83 ~~~-~~--~~vH------~G~TSqDI~DTa~~L~lk~-al~~i~~~l~~l~~~L~~lA~~~~~t~m~gRTHgQ~A~PtTf 152 (436)
T cd03302 83 CPA-AA--GIIH------LGATSCFVTDNTDLIQIRD-ALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTV 152 (436)
T ss_pred CCC-CC--CEEE------ECCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHH
T ss_conf 761-44--7166------3754024577999999999-999999999999999999999966873222006774400289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCC------CCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCC
Q ss_conf 99999999999822899999788530066887011045443------635579999999986088507642078876124
Q gi|254780190|r 198 GQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT------PVGFAEKVAQNIRDITGLPFITAPNKFEALACH 271 (463)
Q Consensus 198 G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna------~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~r 271 (463)
|++|+.|.++|.|+++||..+++++....+|| ||||..+. +.+....+.+.+++.+||+- +.+...++.+|
T Consensus 153 G~k~a~w~~el~r~~~rL~~~~~~~~~~~~~G-AvGt~a~~~~~~~~~~~~~~~l~~~~a~~lgl~~--~~~~~~q~~~R 229 (436)
T cd03302 153 GKRACLWIQDLLMDLRNLERLRDDLRFRGVKG-TTGTQASFLDLFEGDHDKVEALDELVTKKAGFKK--VYPVTGQTYSR 229 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 99999999999999999999996122213678-7330120454246746889999999997348876--78885676873
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 12899899999876438887999999827733472167506--8898756445545624678876520012101235553
Q gi|254780190|r 272 DAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITF 349 (463)
Q Consensus 272 D~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~ 349 (463)
|.++++.++|..++++|.|||+|||+|++ ++|+..| +.|.|||+||||+||+.||.+...|..+.|+......
T Consensus 230 d~~ae~~~~La~ia~~l~kia~di~~l~~-----~~Ev~E~f~~gq~GSStMPHKrNPi~~E~i~~lar~~~~~~~~~~~ 304 (436)
T cd03302 230 KVDIDVLNALSSLGATAHKIATDIRLLAN-----LKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQ 304 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999988999998815-----9817530489998758777451759899999999999985689998
Q ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEE------EECCH
Q ss_conf 223---------457665300234432244589999999999999987349007899998874397366------20110
Q gi|254780190|r 350 ANS---------QGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------TALTS 414 (463)
Q Consensus 350 a~~---------~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv------TaL~p 414 (463)
... +.+.|.. .+-+.+. +.+.+.....++++||+||++||++|++.+.+++ .+|++
T Consensus 305 ~~~~~whERd~~~s~~er~--------~lpe~~~-l~~~~l~~~~~~l~~L~V~~~~M~~Nl~~~~gli~se~vm~~L~~ 375 (436)
T cd03302 305 TASTQWFERTLDDSANRRI--------AIPEAFL-AADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVK 375 (436)
T ss_pred HHHHHHCCCCCCCHHHHHH--------HHHHHHH-HHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7555433467862089988--------9889999-999999999999807989899999999760688999999999987
Q ss_pred H-HHHHHHHHHH----HHHHHCCC------CHHHHHHHCCC--CCHHHHHHHCCHHHHCC
Q ss_conf 5-5389999999----99998299------98999998589--99889998518898438
Q gi|254780190|r 415 K-IGYDNASMIA----KKAHHNST------TLKEEAIASGL--ISATEYDLIVKPEKMIY 461 (463)
Q Consensus 415 ~-iGy~~a~~ia----k~A~~~g~------~l~e~~~~~g~--ls~~eld~lldP~~mt~ 461 (463)
+ +|++.|++++ ++|.++++ +|+|.+.+... ++++|||++|||++|+|
T Consensus 376 ~g~gR~~Ah~~V~~~a~~a~~~~~~~~~~~~l~e~~~~d~~~~l~~~el~~lldP~~ylG 435 (436)
T cd03302 376 AGGDRQDAHERIRVLSHQAAAVVKQEGGDNDLIERIKNDAYFKPIWDELDALLDPKTFIG 435 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHCHHHCCC
T ss_conf 699999999999999999999988546761299997549877999999998649884369
No 33
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=446.97 Aligned_cols=392 Identities=25% Similarity=0.320 Sum_probs=305.6
Q ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------HHHC-CCCCCCC
Q ss_conf 3217799887608778877899999999999999999999808999899999999999----------9985-8741126
Q gi|254780190|r 21 YWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE----------EVIN-GKLDDHF 89 (463)
Q Consensus 21 ~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~----------ei~~-g~~~d~F 89 (463)
-|+..-+|++ .| +...++++..|..|.|+|..++|.+|++.++.|.++|. |+.. .+||
T Consensus 4 RY~~~em~~i----fS----~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~eie~~t~Hd--- 72 (438)
T COG0015 4 RYSSPEMRAI----FS----EEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEIEAETGHD--- 72 (438)
T ss_pred CCCCHHHHHH----CC----HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC---
T ss_conf 5276899987----48----778999999999999999887099989999999987320315799999999985888---
Q ss_pred CCCHHHCCCCCCCCCCCHHHHHH-HHH-HHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50022024210016873057899-999-9732357986430744653012571234456789998663368789999999
Q gi|254780190|r 90 PLVVWQTGSGTQSNMNVNEVISN-RAI-EILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNL 167 (463)
Q Consensus 90 pv~v~q~GsGTs~nMN~NEVIan-ra~-e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L 167 (463)
|+|- +++ |..|+..+ ++|| +|.+|||+.+||..|... +..+.+.+.+..+
T Consensus 73 -------------------V~a~v~~l~e~~~~~~~--~~VH------~GaTS~DI~Dta~~L~lk-~a~~ii~~~l~~l 124 (438)
T COG0015 73 -------------------VKALVRALAEKVGEEAS--EYVH------FGATSQDIIDTALALQLK-EALDLILPDLKRL 124 (438)
T ss_pred -------------------CHHHHHHHHHHCCCCCC--CCEE------ECCCHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf -------------------59999999986562123--6245------066668888589999999-9999999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHH
Q ss_conf 99999998750786432144001760031999999999999822899999788530066887011045443635579999
Q gi|254780190|r 168 HVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVA 247 (463)
Q Consensus 168 ~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~ 247 (463)
.+.|.++|.+|++++|+||||+|+|+|||||.+|+.|++++.|+++||..+.+++....+|| |+||..+.++- +..+.
T Consensus 125 ~~~L~~~A~~~k~t~m~GRTHgq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~G-a~Gt~Aa~~~~-~~~ve 202 (438)
T COG0015 125 IEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGG-AVGTLAALGDL-GAEVE 202 (438)
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHCCCH-HHHHH
T ss_conf 99999999982788111234677775401999999999999999999999985335301266-32218635840-58999
Q ss_pred HHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCC
Q ss_conf 99998608850764207887612412899899999876438887999999827733472167506--8898756445545
Q gi|254780190|r 248 QNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKV 325 (463)
Q Consensus 248 ~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~ 325 (463)
+.+++.+||+..|..+ ++..||+++++.++|+.++++|.||+.|||+|+ |++++|+..| +.|.|||+||||+
T Consensus 203 ~~v~e~LGL~~~p~st---q~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~---~~e~~Ev~E~f~~gq~GSSaMPHKr 276 (438)
T COG0015 203 ERVAEKLGLKPAPIST---QVSPRDRIAEFFSALALLAGSLEKFARDIRLLQ---RTEVGEVEEPFAKGQVGSSAMPHKR 276 (438)
T ss_pred HHHHHHCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999986999998876---506536899999999999987999999999987---1374300134678998778787466
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHC
Q ss_conf 624678876520012101235553223457665300234432-2445899999999999999873490078999988743
Q gi|254780190|r 326 NPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAY-NVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR 404 (463)
Q Consensus 326 NPv~~E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~-~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~ 404 (463)
||+.||.+.+.+..+.++-.+......++ +|-...-.-.-+ ++-+.+. +++.+-....+.+++|+||+++|++|++.
T Consensus 277 NPi~~E~~~glar~~r~~~~~~~e~~~~w-hERdlt~ssver~~Lp~~~~-~~~~aL~~~~~vl~~L~v~~~~m~~nL~~ 354 (438)
T COG0015 277 NPIDSENVTGLARVARALVSTLLENLVLW-HERDLTDSSVERVILPDAFI-AADGALNRLLNVLEGLEVNPERMRRNLDL 354 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCEECHHHHHHHHHH
T ss_conf 82888999999999999899999986888-72356204788878889999-99999999999997576679999988743
Q ss_pred CCCEEE------ECCH-HHHHHHHHHHHH----HHHHCCCCHHHHHHHC----CCCCHHHHHHHCCHHHHCC
Q ss_conf 973662------0110-553899999999----9998299989999985----8999889998518898438
Q gi|254780190|r 405 SLMLVT------ALTS-KIGYDNASMIAK----KAHHNSTTLKEEAIAS----GLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 405 s~~lvT------aL~p-~iGy~~a~~iak----~A~~~g~~l~e~~~~~----g~ls~~eld~lldP~~mt~ 461 (463)
..+++- +|.+ -+||+.|+++++ .++++++++++..++. ++++++++++++||.+|+|
T Consensus 355 ~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~dp~~y~G 426 (438)
T COG0015 355 TLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLELLDPANYLG 426 (438)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCHHHHHHCCCHHHHHH
T ss_conf 245264399999988648989999999999999999850326888613425332376889987179988755
No 34
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase_1: Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=0 Score=452.18 Aligned_cols=344 Identities=25% Similarity=0.266 Sum_probs=267.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHH-HH-HHHH
Q ss_conf 999999999999999999998089998999999999999985874112650022024210016873057899-99-9973
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISN-RA-IEIL 118 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIan-ra-~e~~ 118 (463)
+...|+++..|..|.|+|+.++|+||++.++.|.++|+.- +.++-.--.. ++. .|+|- ++ .|.+
T Consensus 13 d~~~~~~~l~vE~AlA~aqa~~G~Ip~~aa~~I~~~~~~d---------~~~i~~~e~~--~~h---dv~a~v~~l~e~~ 78 (387)
T cd01360 13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFD---------VERVKEIEAE--TKH---DVIAFVTAIAEYC 78 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC---------HHHHHHHHHH--HCC---CHHHHHHHHHHHC
T ss_conf 6999999999999999999877999999999999866589---------9999999988--499---8399999999866
Q ss_pred CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHH
Q ss_conf 23579864307446530125712344567899986633687899999999999999875078643214400176003199
Q gi|254780190|r 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 (463)
Q Consensus 119 g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG 198 (463)
|. .| ++|| +|.||||+++|+++|..... ...+.+.|..|.++|.++|++|++++|+||||+|+|+|+|||
T Consensus 79 g~-~~--~~iH------~G~TsqDivdTa~~L~lk~a-~~~i~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G 148 (387)
T cd01360 79 GE-AG--RYIH------FGLTSSDVVDTALALQLREA-LDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFG 148 (387)
T ss_pred CC-CC--CEEE------ECCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHH
T ss_conf 40-10--6123------17757419989999999976-999999999999999999998127740125325644235399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHH
Q ss_conf 99999999998228999997885300668870110454436355799999999860885076420788761241289989
Q gi|254780190|r 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCH 278 (463)
Q Consensus 199 ~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~ 278 (463)
++|++|+++|.|+++||..+++++..+|+|| |+||+.+..+. +.+.+++.+||+..+. ..++.+||+++++.
T Consensus 149 ~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-AvGt~a~~~~~----~~~~~a~~LGl~~~~~---~~~~~~Rd~~~e~~ 220 (387)
T cd01360 149 LKFALWYAEFKRHLERLKEARERILVGKISG-AVGTYANLGPE----VEERVAEKLGLKPEPI---STQVIQRDRHAEYL 220 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHH----HHHHHHHHCCCCCCCC---CCCCCCCHHHHHHH
T ss_conf 9999999999999999999999884204464-21035669979----9999999809997765---42221538999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q ss_conf 9999876438887999999827733472167506--88987564455456246788765200121012355532234---
Q gi|254780190|r 279 GAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQ--- 353 (463)
Q Consensus 279 ~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~~~--- 353 (463)
++|+.++++|+|||+||++|+ +++|+|+.+| +.++||||||||+||+.+|.++..|..+.|+-.+..-+...
T Consensus 221 ~~l~~i~~~l~kia~Di~~l~---~~e~~el~e~f~~~~~GSS~MPhK~NP~~~E~i~~lar~~~~~~~~~~~~~~~~~e 297 (387)
T cd01360 221 STLALIASTLEKIATEIRHLQ---RTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIPALENVALWHE 297 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999989999999999987---42101622246899970487776617588899999999999999999704655343
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCC--EEE----ECCHH-HHHHHH
Q ss_conf -----576653002344322445899999999999999873490078999988743973--662----01105-538999
Q gi|254780190|r 354 -----GHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM--LVT----ALTSK-IGYDNA 421 (463)
Q Consensus 354 -----G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~--lvT----aL~p~-iGy~~a 421 (463)
.+.|+. .+.+++.++..++..+ ..+++||+||++||++|++.+.+ +++ .|+++ +|+..|
T Consensus 298 RDl~~~~~e~~--------~lp~~~~~~~~~L~~~-~~ll~~L~v~~~~M~~nl~~~~g~~~ae~~~~~Lv~~G~~r~~A 368 (387)
T cd01360 298 RDISHSSVERV--------ILPDATILLDYILRRM-TRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEA 368 (387)
T ss_pred CCCCHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 55412477775--------4788999999999999-99985488989999999860478679999999998779988999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780190|r 422 SMIAKKA 428 (463)
Q Consensus 422 ~~iak~A 428 (463)
++++++.
T Consensus 369 h~~V~r~ 375 (387)
T cd01360 369 YEIVQRE 375 (387)
T ss_pred HHHHHHH
T ss_conf 9999999
No 35
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=414.65 Aligned_cols=395 Identities=20% Similarity=0.250 Sum_probs=307.0
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 33863243217799887608778877899999999999999999999808999899999999999998587411265002
Q gi|254780190|r 14 MKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVV 93 (463)
Q Consensus 14 ~~vp~~~~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v 93 (463)
...|..++|+-+-.--..-.+-+..--|-....+++-|.+|--..-.+.|+++.+.+...-++-..+.+-++. |+--
T Consensus 412 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~ahl~ml~~~gi~~~~~~~~l~~~~~~l~~~~~~---~l~~ 488 (892)
T PRK02186 412 SAGAGAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDAGFA---PLLA 488 (892)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH---HHCC
T ss_conf 8998745456897887563387533363455554522126675787762787778889999999987746834---4306
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20242100168730578999999732357986430744653012571234456789998663368789999999999999
Q gi|254780190|r 94 WQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTK 173 (463)
Q Consensus 94 ~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ 173 (463)
--.+-| .-|| ..+-.+|.+|...|-+ +| .++|+||++.|.++|.+...+ ..+...+..|+++|..
T Consensus 489 ~~~~rg--~Yf~----yE~~Lier~G~D~gG~--Lh------tgRSRNDqvAT~~rl~lRd~~-~~~~~~l~~L~~aL~~ 553 (892)
T PRK02186 489 RPAPRG--LYML----YEAYLIERLGEDVGGV--LQ------TARSRNDINATTTKLHLREAT-SRAFDALWRLRRALVF 553 (892)
T ss_pred CCCCCC--HHHH----HHHHHHHHHCHHHCCE--EE------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 878863--0137----8999999828011262--52------053344689999999999999-9999999999999999
Q ss_pred HHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9875078643214400176003199999999999982289999978853006688701-104544363557999999998
Q gi|254780190|r 174 KISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRD 252 (463)
Q Consensus 174 ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~ 252 (463)
+|++|.+++|+||||+|+|||+||||++.+|.++|.||.+||..++++++.+|||++| +||++..++. ..++
T Consensus 554 ~Ae~~~~tvmPgyTHlQ~AQP~t~gH~Lla~~~~l~RD~~Rl~~~~~r~n~~PLGa~AlaGT~~piDr~-------~tA~ 626 (892)
T PRK02186 554 KASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDPE-------FVAR 626 (892)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH-------HHHH
T ss_conf 998633865236445765674129999999999998599999999832366985200025898986989-------9999
Q ss_pred HHCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHH
Q ss_conf 608850764207887612412899899999876438887999999827733472167506-8898756445545624678
Q gi|254780190|r 253 ITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCE 331 (463)
Q Consensus 253 ~tgl~~~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E 331 (463)
++|+. .+..|+++++++||..+|+.++++.++++|+|+|+|+.+|+| .+||.|.|| +...||||||||+||+++|
T Consensus 627 lLGF~-~~~~NSlDavs~RDf~~e~~~~~a~~~~~lsRlaeel~lwss---~efgfi~l~D~~~tgSSiMPQKkNPdvlE 702 (892)
T PRK02186 627 LLGFE-QPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTT---REFALVSLPDALTGGSSMLPQKKNPFLLE 702 (892)
T ss_pred HCCCC-CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 81998-755553123321189999999999999988899999999723---25574876754544566678676971899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCC
Q ss_conf 87652001210123555322345----76653002344322445899999999999999873490078999988743973
Q gi|254780190|r 332 AITQVCAHIFGNHAAITFANSQG----HFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLM 407 (463)
Q Consensus 332 ~i~~~a~qV~G~d~ti~~a~~~G----~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~ 407 (463)
.++..+.+|+|+-.++...-..- +.+++- + .-..++++++.+..++..++. +|.++++|+++|++.+..++.
T Consensus 703 lvRgKaGrviG~L~~lLt~lKglP~~yn~D~~~--e-~~~~~~da~d~~~~~L~l~~~-~v~~~~~~~~rM~~aa~~gfs 778 (892)
T PRK02186 703 FVKGRAGVVAGALASASAALGKTPFSNSFEAGS--P-MNGPIAQACAAIEDAAAVLVL-LIDGLEADQARMRAHLEDGGV 778 (892)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--C-CCHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHCCCC
T ss_conf 973200003889999999863587633443122--2-002689999999999999999-984485089999998653871
Q ss_pred EEEECCHHH----H--HHHH----HHHHHHHHHCCCCHHHHHHH
Q ss_conf 662011055----3--8999----99999999829998999998
Q gi|254780190|r 408 LVTALTSKI----G--YDNA----SMIAKKAHHNSTTLKEEAIA 441 (463)
Q Consensus 408 lvTaL~p~i----G--y~~a----~~iak~A~~~g~~l~e~~~~ 441 (463)
++|.|++++ | +..| .++++.|..+|++-.+...+
T Consensus 779 tATdlAD~LVr~~GipFR~AH~iVG~~Vr~al~~g~~~~~~~~~ 822 (892)
T PRK02186 779 SATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAA 822 (892)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 69999999998649987899999999999998559986678987
No 36
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=406.87 Aligned_cols=372 Identities=16% Similarity=0.143 Sum_probs=276.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 89999999999999999999980899989999999999999858741126500220242100168730578999999732
Q gi|254780190|r 40 QPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILG 119 (463)
Q Consensus 40 ~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g 119 (463)
+...++..=..--.|-|+.-.+.|+|+++.+++|.++.++|.+|++ .+++ +---.||| |.++..|.+|
T Consensus 27 ~D~~L~~~DI~gS~AHa~mL~~~giit~~e~~~I~~~L~~i~~~~~----~~~~----~~EDiH~~----iE~~L~e~iG 94 (434)
T PRK06389 27 ADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYKNGI----EIDL----DLEDVHTA----IENFVIRRCG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC----CCCC----CCCCHHHH----HHHHHHHHHH
T ss_conf 8999999999876999999998799899999999999999990998----5799----86555799----9999999970
Q ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHH
Q ss_conf 35798643074465301257123445678999866336878999999999999998750786432144001760031999
Q gi|254780190|r 120 GVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQ 199 (463)
Q Consensus 120 ~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~ 199 (463)
+.|. .+| +|+|||||+.|++||.+..++ ..+...+..+++++ +..+.+++||||||+|+|||+||||
T Consensus 95 -d~g~--klH------TgRSRNDQVatd~RL~lr~~~-~~l~~~l~~l~~~l---~~~~~~~~mPGYTHlQ~AQP~t~~h 161 (434)
T PRK06389 95 -DMFK--NFR------LFLSRNEQVHADLNLFIIDKI-IEIEKILYEIIKVI---PGFNLKGRLPGYTHFRQAMPMTVNT 161 (434)
T ss_pred -HHHC--CHH------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf -6543--112------035688999999999999999-99999999999999---9754166367742223240121789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHHH-HHH
Q ss_conf 99999999982289999978853006688701-1045443635579999999986088507642078876124128-998
Q gi|254780190|r 200 EFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAI-AFC 277 (463)
Q Consensus 200 ~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~-~e~ 277 (463)
++.+|++++.||.+||..++++++++|||++| .||.+..++. ..++++|+. .+..|+++++++||.. .++
T Consensus 162 ~l~a~~e~l~rD~~rL~~~~~r~n~~PLGsgA~aGt~~piDR~-------~~a~~LGF~-~~~~Nsl~a~s~r~~~~~~~ 233 (434)
T PRK06389 162 YINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVKFN-------QMSELLGME-KNIKNPVYSSSLYIKTIENI 233 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-------HHHHHCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999986144875300025888876889-------999982999-76555188886008999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH-----
Q ss_conf 99999876438887999999827733472167506-889875644554562467887652001210123555322-----
Q gi|254780190|r 278 HGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFAN----- 351 (463)
Q Consensus 278 ~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~~a~----- 351 (463)
+++++.++++|+|+|+|+.+|+| . |.+.|| +..+||||||||+||+.+|.+++.|.+|+|+..++..-.
T Consensus 234 ~~~~s~~~~~LSRlaeDlilwss---~--gfv~l~d~~~tGSSIMPQKkNPD~lELiRgk~g~v~G~l~~ll~~~kgLP~ 308 (434)
T PRK06389 234 SYLISSLAVDLSRICQDIIIYYE---N--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTT 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---C--CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999816---8--848757644335566877779849999988887787799999999806865
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEECCHHH-----HHHHHHHHH
Q ss_conf -34576653002344322445899999999999999873490078999988743973662011055-----389999999
Q gi|254780190|r 352 -SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI-----GYDNASMIA 425 (463)
Q Consensus 352 -~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL~p~i-----Gy~~a~~ia 425 (463)
.+-.||.. .+ .++++++.+..++..+.. +++++++|+++++.... .+.+|+++.++ -+..|++++
T Consensus 309 ~YnrDlQed-Ke-----~lfds~d~~~~~L~i~~~-~i~~i~~~~~~~~~~~~--~~~ATd~A~~lv~kGvPFReAh~iv 379 (434)
T PRK06389 309 GYHRDFQIV-KD-----STISFINNFERILLGLPD-LLYNIKFEITNEKNIKN--SVYATYNAWLAFKNGMDWKSAYAYI 379 (434)
T ss_pred CCCHHHHHC-HH-----HHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHCC--CCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 111466622-08-----887799999999999999-99758818899985305--5531599999998799879999999
Q ss_pred HHHHHCCCCHHHHHHH--CCCCC-------HHHHHHHCCHHH
Q ss_conf 9999829998999998--58999-------889998518898
Q gi|254780190|r 426 KKAHHNSTTLKEEAIA--SGLIS-------ATEYDLIVKPEK 458 (463)
Q Consensus 426 k~A~~~g~~l~e~~~~--~g~ls-------~~eld~lldP~~ 458 (463)
-+++++|..+.+.-.+ ..+++ +.++..+++|..
T Consensus 380 G~~Vr~~e~l~~~~~edl~d~l~~~~l~~i~~~ik~~~~~~~ 421 (434)
T PRK06389 380 GNKIREGEVLDEYQPEDLTDYIDVNELKRINHNIKIIIEPRE 421 (434)
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCHHH
T ss_conf 999998887530473778865048989763255787716899
No 37
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase; InterPro: IPR012789 Proteins in this entry are 3-carboxy-cis,cis-muconate cycloisomerases, which catalyse the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate can all be converted in one step to protocatechuate. All members of the seed alignment for this entry were chosen from within protocatechuate degradation operons of at least three genes of the pathway, and from genomes with the complete pathway through beta-ketoadipate.; GO: 0047472 3-carboxy-ciscis-muconate cycloisomerase activity, 0019619 protocatechuate catabolic process.
Probab=100.00 E-value=0 Score=395.11 Aligned_cols=314 Identities=26% Similarity=0.269 Sum_probs=254.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 99999999999999999999808-999899999999999998587411265002202421001687-3057899999973
Q gi|254780190|r 41 PLVIIRALGIIKQAAARVNIELG-KLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMN-VNEVISNRAIEIL 118 (463)
Q Consensus 41 ~~~~i~a~~~vK~AaA~an~~~G-~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN-~NEVIanra~e~~ 118 (463)
.+.+|+||.-+.-|.|+|+.++| ++|.+.+++|..+|.+. ..|+-+=..|+-.-=| |=++|.+.- +..
T Consensus 17 D~A~l~Aml~fEaALa~A~A~~Ga~iP~~Aa~~i~a~~~~~---------~~D~~~L~~~~A~~Gn~vipLV~~L~-~~v 86 (351)
T TIGR02426 17 DRAFLRAMLDFEAALARAQADVGALIPAEAAEAIEAACAEA---------APDLEALAEAAAEAGNPVIPLVKALR-KAV 86 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCCCCCHHHHHHHH-HHH
T ss_conf 49999999999999999885228989788999999999877---------87799999998618998725899888-863
Q ss_pred CC---CCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEC
Q ss_conf 23---579864307446530125712344567899986633687899999999999999875078643214400176003
Q gi|254780190|r 119 GG---VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPL 195 (463)
Q Consensus 119 g~---~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~Pi 195 (463)
|+ +.+ .||| +|.||+|++||++.| +.+...+.|.+.|.+|.+.|..++.+|++++|+|||.+|+|+||
T Consensus 87 a~hd~~aa--~~VH------~GATSQDviDT~LML-~lr~a~~l~~adl~~L~~~La~La~~hr~tpm~grTl~Q~A~P~ 157 (351)
T TIGR02426 87 AEHDPEAA--RYVH------RGATSQDVIDTALML-QLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPT 157 (351)
T ss_pred CCCCHHHH--HHCC------CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHH
T ss_conf 37872125--1026------787357699999999-99999999999899999999999997377887300000115679
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCC-CCCCH----HHHHHHHHHHHCCCCEECCHHHHHHHC
Q ss_conf 1999999999999822899999788530066887011045443-63557----999999998608850764207887612
Q gi|254780190|r 196 TLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT-PVGFA----EKVAQNIRDITGLPFITAPNKFEALAC 270 (463)
Q Consensus 196 TlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna-~~~f~----~~~~~~La~~tgl~~~~a~n~~~a~~~ 270 (463)
|||.|+++|.+.+.|+++||...+++.+.++||| |+|| +.+ -..++ ..+.++|++.+||+....+ |++.
T Consensus 158 T~G~k~AgWL~~v~ra~~RL~~l~~~~l~lQfGG-AaGT-Laa~~~~~G~~D~~~va~aLA~~LgL~~P~~p----WHt~ 231 (351)
T TIGR02426 158 TFGLKAAGWLAAVLRARDRLAALRTEALPLQFGG-AAGT-LAALLETRGATDALAVAAALAARLGLPLPALP----WHTQ 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHH-HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCC
T ss_conf 9998863268899999999998764143101460-6899-99850688899837899999986076778888----7631
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC--CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 412899899999876438887999999827733472167506889--875644554562467887652001210123555
Q gi|254780190|r 271 HDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENE--PGSSIMPGKVNPTQCEAITQVCAHIFGNHAAIT 348 (463)
Q Consensus 271 rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q--~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti~ 348 (463)
||.++++.+.|..++++|+||+.||.||+ ++|+||+..|+.. .|||+||||+|||-|+.+...+.++.|.-.|+-
T Consensus 232 R~~ia~~g~~Lal~aGalGKia~Dv~ll~---~~E~gE~~EP~~gGkGGSSaMPHKrNPV~a~~~~~aA~r~P~L~ATL~ 308 (351)
T TIGR02426 232 RDRIADFGAALALVAGALGKIAGDVALLS---QTEVGEVFEPAGGGKGGSSAMPHKRNPVGAVLLLAAARRAPGLAATLF 308 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47999999999999865678899999998---776787506888868988788100373899999999988699999998
Q ss_pred H-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3-22--------3457665300234432244589999999999999987349
Q gi|254780190|r 349 F-AN--------SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGI 391 (463)
Q Consensus 349 ~-a~--------~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl 391 (463)
- +- ..+|.|+.+ |..+.-++.+.-.-...|++||
T Consensus 309 ~aal~~~~ERs~G~WhaEW~~---------Lr~l~~lT~gAl~~~~~l~~Gl 351 (351)
T TIGR02426 309 AAALAQEHERSLGGWHAEWET---------LRELVRLTAGALRQAAELAEGL 351 (351)
T ss_pred HHHHCCHHCCCCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 853021112652022320135---------6999999999999999986039
No 38
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=0 Score=385.58 Aligned_cols=322 Identities=22% Similarity=0.227 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf 32177998876087788778999999999999999999998089998999999999999985874112650022024210
Q gi|254780190|r 21 YWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGT 100 (463)
Q Consensus 21 ~yG~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGT 100 (463)
+||-.-++++ .| +...++++..|..|.|+|+.++|++|++.++.|.++|+.. .+|+-.-..+|
T Consensus 14 ~y~~~em~~i----fS----de~~~~~~l~vE~Ala~Aqa~lG~IP~~aa~~I~~~~~~~---------~~d~~~l~~~~ 76 (353)
T PRK05975 14 LFGDDEIAAL----FS----AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETF---------EPDLAALRHAT 76 (353)
T ss_pred HCCCHHHHHH----HC----HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC---------CCCHHHHHHHH
T ss_conf 0299999988----09----1999999999999999999987999999999999860133---------57899999898
Q ss_pred CCCCCCHHHHHH-HH-HHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 016873057899-99-9973235798643074465301257123445678999866336878999999999999998750
Q gi|254780190|r 101 QSNMNVNEVISN-RA-IEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178 (463)
Q Consensus 101 s~nMN~NEVIan-ra-~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~ 178 (463)
....+ .|++- ++ .+.+|.+.|. +|| +|.+|+|++|||..|... +..+.+.+.|..+.++|.+++.+|
T Consensus 77 ~~~g~--~v~a~v~~l~~~~~~~a~~--~vH------~GaTSqDV~DTa~~L~lr-~al~~i~~~L~~l~~~L~~la~~h 145 (353)
T PRK05975 77 ARDGV--VVPALVRQLRAAVGEEAAA--HVH------FGATSQDVIDTSLMLRLK-AAVEILAARLGALIEALDALEATF 145 (353)
T ss_pred HHCCC--CHHHHHHHHHHHCCHHHHH--HHC------CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74486--1899999999865867673--612------898542178789999999-999999999999999999999986
Q ss_pred CCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 78643214400176003199999999999982289999978853006688701104544363557999999998608850
Q gi|254780190|r 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF 258 (463)
Q Consensus 179 ~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~ 258 (463)
++++|+||||+|+|+|+|||++|+.|++++.|+++||..+++++..+++|| ||||. +...+.+..+.+.+++.+||..
T Consensus 146 ~~t~m~GRThgq~A~P~TfG~k~a~w~~el~r~~~rl~~~~~~~~~~~~~G-AvGt~-a~~~~~~~~v~~~~a~~LgL~~ 223 (353)
T PRK05975 146 GGNALTGHTRMQAAIPITVADRLASWRAPLARHRDRLEALRPDVFPVQFGG-AAGTL-EKLGGKAAAVRAELAKRLGLED 223 (353)
T ss_pred CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEHH-CCCCCCHHHHHHHHHHHCCCCC
T ss_conf 167500031476260115999999999999999999999998666650466-21210-0357628999999998759999
Q ss_pred EECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 76420788761241289989999987643888799999982773347216750688987564455456246788765200
Q gi|254780190|r 259 ITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCA 338 (463)
Q Consensus 259 ~~a~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K~NPv~~E~i~~~a~ 338 (463)
. + .+++.||+++++.++|+.++++|.|||+|||+|+ |.+ .|+.. +.|.|||+||||+||+.||.+...+.
T Consensus 224 ~--~---~~~~~Rd~~~e~~~~La~ia~sl~kia~di~~l~---~~~-~E~~~-~g~~GSSaMPhKrNPi~~E~i~~laR 293 (353)
T PRK05975 224 P--P---QWHSQRDFIADFGHLLSLVTGSLGKFGQDIALMA---QLG-DEISL-SGGGGSSAMPHKQNPVAAETLVTLAR 293 (353)
T ss_pred C--C---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCC-CCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8--7---5010213299999999999999999999999985---035-11535-78988777887658388999999998
Q ss_pred CCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1210123555322--------3457665300234432244589999999999999987349
Q gi|254780190|r 339 HIFGNHAAITFAN--------SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGI 391 (463)
Q Consensus 339 qV~G~d~ti~~a~--------~~G~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl 391 (463)
.+.+...+...+. ++++.|+- +|..+.++++++-....++++||
T Consensus 294 ~~~~~~~~~~~a~~~~~ER~~~~w~~Ew~---------~lP~~~~~~~~~L~~a~~ll~~L 345 (353)
T PRK05975 294 FNATQVSGLHQALVHEQERSGAAWTLEWM---------ILPQMVAATGAALRLAAELAGNI 345 (353)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78877878987441030046861678999---------99999999999999999999828
No 39
>KOG1316 consensus
Probab=100.00 E-value=0 Score=373.87 Aligned_cols=393 Identities=21% Similarity=0.248 Sum_probs=308.8
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCH
Q ss_conf 88760877887789999999999999999999980899989999999999999858741126500220242100168730
Q gi|254780190|r 28 RSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVN 107 (463)
Q Consensus 28 Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~N 107 (463)
-.++.|.-| ......+..+=..=-||.|.+-.+.|+|.+...+-|.+..++|....-.+.|.+.+ + --..+|+
T Consensus 19 p~m~~fn~S-i~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p---~-dEDvHta-- 91 (464)
T KOG1316 19 PLMEKFNAS-IPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNP---N-DEDVHTA-- 91 (464)
T ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECC---C-CHHHHHH--
T ss_conf 799986434-75306888764054499999998758876888999997799999998649468678---8-1345667--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 57899999973235798643074465301257123445678999866336878999999999999998750786432144
Q gi|254780190|r 108 EVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRT 187 (463)
Q Consensus 108 EVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRT 187 (463)
+..|..|+.|+..| .+| .|+|+||++.|.+||++...+ +.++-.+..|++++.++|+.+.+++|||||
T Consensus 92 --nErrL~eliG~~ag---KlH------TgRSRNDQV~TDlRLw~r~~i-~~~~~~l~~L~~~~v~rAe~~~dvlmpGYT 159 (464)
T KOG1316 92 --NERRLTELIGEIAG---KLH------TGRSRNDQVVTDLRLWLRDAI-DTILGLLWNLIRVLVDRAEAELDVLMPGYT 159 (464)
T ss_pred --HHHHHHHHHHHHHH---HCC------CCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCEECCCHH
T ss_conf --89999998755643---113------576555336789999999999-999999999999999998624472225716
Q ss_pred HCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHH
Q ss_conf 00176003199999999999982289999978853006688701-10454436355799999999860885076420788
Q gi|254780190|r 188 HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA-VGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFE 266 (463)
Q Consensus 188 HlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA-vGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~ 266 (463)
|||.|||+.|.|++..++.++.||..||.+++.|++++|||++| +|++++.++.| |++.+|+. .+..|+++
T Consensus 160 HLQRAQpvrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGagALAGnpl~iDR~~-------la~~LgF~-~v~~NSm~ 231 (464)
T KOG1316 160 HLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAGNPLGIDREF-------LAEELGFE-GVIMNSMD 231 (464)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHH-------HHHHCCCC-CCCHHHHH
T ss_conf 66541673028999998999876788999999874248753211038987736899-------99755875-30010011
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 7612412899899999876438887999999827733472167506-889875644554562467887652001210123
Q gi|254780190|r 267 ALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHA 345 (463)
Q Consensus 267 a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ 345 (463)
++++||.++||..+-+++..+|+|+|.|+.+++| .+||.+.+. +..+||||||||+||+..|++++.+.+|+|+..
T Consensus 232 AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t---~EF~Fv~lSDaySTGSSlMPQKKNpDslELlRgksgrV~gdl~ 308 (464)
T KOG1316 232 AVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYST---KEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRVFGDLT 308 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEC---CCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEHHHHH
T ss_conf 0144026799999988999999987657603130---1147143012345675447777899778886355654336668
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCEEEECCHHH---
Q ss_conf 555322345------76653002344322445899999999999999873490078999988743973662011055---
Q gi|254780190|r 346 AITFANSQG------HFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI--- 416 (463)
Q Consensus 346 ti~~a~~~G------~lELNv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~lvTaL~p~i--- 416 (463)
.+.+....- .||-. -+| +++|.+.+.+.+...+. +++.+++|+|+|.+.|-- -|++|.|+.|+
T Consensus 309 g~lmt~KG~PstYnkDlQeD-Kep-----~Fds~~tv~~~l~v~tg-v~stltvn~e~m~~aLt~-dmlATdlA~YLVrK 380 (464)
T KOG1316 309 GLLMTLKGLPSTYNKDLQED-KEP-----LFDSSKTVSDSLQVATG-VISTLTVNQENMEKALTP-DMLATDLAYYLVRK 380 (464)
T ss_pred HHHHHHCCCCCCCCCCHHHH-HHH-----HHHHHHHHHHHHHHHHH-HHHHEEECHHHHHHCCCC-HHHHHHHHHHHHHC
T ss_conf 78987267852013203420-037-----77668899999999987-754536778888640580-15576899999975
Q ss_pred H------HHHHHHHHHHHHHCCCCHHHHHHHC-CCCC---HHHHHHHCCHHH
Q ss_conf 3------8999999999998299989999985-8999---889998518898
Q gi|254780190|r 417 G------YDNASMIAKKAHHNSTTLKEEAIAS-GLIS---ATEYDLIVKPEK 458 (463)
Q Consensus 417 G------y~~a~~iak~A~~~g~~l~e~~~~~-g~ls---~~eld~lldP~~ 458 (463)
| |+..-+.+..|.+.|.++-.+-++. ..++ ++++-..+|.++
T Consensus 381 GvPFRqtHhisG~~V~~ae~rg~~l~~LsledlqklsplF~eDv~~v~~ye~ 432 (464)
T KOG1316 381 GVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCVFNYEN 432 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHCHHH
T ss_conf 8982155566688999999808870117799875127200011677605365
No 40
>cd01598 PurB PurB: PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This group contains proteins similar to EcASL, the product of the gene purB in Escherichia coli. ASL is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=0 Score=360.43 Aligned_cols=386 Identities=21% Similarity=0.266 Sum_probs=247.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCHH---HHHHHHHH
Q ss_conf 9999999999999999999808999899--999999999998587411265002202421001687305---78999999
Q gi|254780190|r 42 LVIIRALGIIKQAAARVNIELGKLDPKI--GEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNE---VISNRAIE 116 (463)
Q Consensus 42 ~~~i~a~~~vK~AaA~an~~~G~l~~~~--a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN~NE---VIanra~e 116 (463)
..+|+....|.-+-+++-.+.|.++.-. .....+.++.|...--.+. ...|-.-- .-||..|-- .|.++..+
T Consensus 8 ~alik~rv~VEi~~l~~L~~~~~i~~~~~~~~~~~~~l~~i~~~f~~~d-~~~Ik~iE--~~tnHDVkAvey~i~e~~~~ 84 (425)
T cd01598 8 YALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEED-ALRIKEIE--ATTNHDVKAVEYFLKEKFET 84 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHH--HHCCCCEEEHHHHHHHHHHH
T ss_conf 8999999999999999996579876788789999999999997389989-99999997--25189964519999999875
Q ss_pred HHCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEC
Q ss_conf 73235798-64307446530125712344567899986633687899999999999999875078643214400176003
Q gi|254780190|r 117 ILGGVMGS-KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPL 195 (463)
Q Consensus 117 ~~g~~~g~-~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~Pi 195 (463)
.+ ..+. ..+|| +|.+|+|+.+||.-|.....+.+.+++.+..+.+.|.++|.+|++++|+||||+|+|+|+
T Consensus 85 -~~-~l~~~~e~IH------fG~TSqDI~dta~~L~lk~a~~~vi~~~l~~l~~~L~~lA~~~~~tpmlgRTHGQ~A~Pt 156 (425)
T cd01598 85 -LG-LLKKIKEFIH------FACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPT 156 (425)
T ss_pred -CC-CCCCCCCEEE------ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
T ss_conf -41-2134433356------466488898799999999999999988899999999999998545631104217766340
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC----CCCH-HHHHHHHHHHHCCCCEECCHHHHHHHC
Q ss_conf 19999999999998228999997885300668870110454436----3557-999999998608850764207887612
Q gi|254780190|r 196 TLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTP----VGFA-EKVAQNIRDITGLPFITAPNKFEALAC 270 (463)
Q Consensus 196 TlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~----~~f~-~~~~~~La~~tgl~~~~a~n~~~a~~~ 270 (463)
|||++|+.|++.+.|+++||++.. ....+|| |||| +|++ |+.. ..+.+.+.+.+||.+.+... .+.+
T Consensus 157 TfGke~a~~~~rl~r~~~rL~~~~---~~gk~~G-AvGt-~~Ah~~a~p~~dw~~~~~~f~~~LGL~~~~~tT---QI~~ 228 (425)
T cd01598 157 TLGKELAVFVYRLERQYKQLKQIE---ILGKFNG-AVGN-FNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTT---QIEP 228 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCC-CCCC-HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCC
T ss_conf 199999999999999999999743---0231057-6663-266676346764999999999972888898878---8566
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCC---CCCCHHH
Q ss_conf 412899899999876438887999999827733472167506--88987564455456246788765200---1210123
Q gi|254780190|r 271 HDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCA---HIFGNHA 345 (463)
Q Consensus 271 rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~---qV~G~d~ 345 (463)
||.++++.+.|+.++.+|.|||.||+++.| ++|+..| +.|.|||+||||+||+.+|..-+.+. -+..+ .
T Consensus 229 rD~~ae~~~~l~~i~~~l~~la~Di~~~~s-----~~~~~e~~~~gqvGSStMPHK~NPI~~En~egnl~la~~l~~~-~ 302 (425)
T cd01598 229 HDYIAELFDALARINTILIDLCRDIWGYIS-----LGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNH-L 302 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH-H
T ss_conf 139999988999999999999999999985-----0052126789898048888552850156650568889999999-8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHH--HHHHHHCCEECHHHHHHHHHCCCCEE-----EECCHHH
Q ss_conf 555322345766530023443-22445899-999999999--99987349007899998874397366-----2011055
Q gi|254780190|r 346 AITFANSQGHFELNVYKPMIA-YNVLQSIQ-LLSDSIDSF--TINCIEGIQARKENIQLSLNRSLMLV-----TALTSKI 416 (463)
Q Consensus 346 ti~~a~~~G~lELNv~~Plia-~~ll~S~~-lL~~a~~~f--~~~~i~gl~vn~erm~~~l~~s~~lv-----TaL~p~i 416 (463)
+..+..+ .+|-. +. ..+++.+. .+..++..+ ..+.+++|+||+++|++||+.+..+. |.| .+.
T Consensus 303 ~~~l~~s--r~qRD-----LsdStv~Rnig~~~~~~~ia~~~~~~gL~~l~vn~~~m~~nL~~~~~vlaEai~~~l-r~~ 374 (425)
T cd01598 303 SAKLPIS--RLQRD-----LTDSTVLRNIGVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWEVLAEPIQTVM-RRY 374 (425)
T ss_pred HHHCCHH--HHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHH-HHH
T ss_conf 8733318--87722-----424677777765377899999999977628557899999998718255999999999-984
Q ss_pred HHHHHHHHHHHHHH----CCCCHHHHHHHCCCCCHHHHHHH--CCHHHHCC
Q ss_conf 38999999999998----29998999998589998899985--18898438
Q gi|254780190|r 417 GYDNASMIAKKAHH----NSTTLKEEAIASGLISATEYDLI--VKPEKMIY 461 (463)
Q Consensus 417 Gy~~a~~iak~A~~----~g~~l~e~~~~~g~ls~~eld~l--ldP~~mt~ 461 (463)
|++.|++++|+.-. +++++++.+.... ++++.-+++ |.|.+|||
T Consensus 375 G~~~aye~vk~ltrg~~~~~~~l~~~i~~l~-~~~~~k~~l~~ltP~~Y~G 424 (425)
T cd01598 375 GIPNPYEKLKDLTRGKRIDKETLKEFIDSLD-IPEEAKAELLALTPANYIG 424 (425)
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC-CCHHHHHHHHCCCCCCCCC
T ss_conf 8978899999985789888899999998389-9999999998089846679
No 41
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=341.10 Aligned_cols=302 Identities=23% Similarity=0.287 Sum_probs=210.8
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHH
Q ss_conf 43074465301257123445678999866336878999999999999998750786432144001760031999999999
Q gi|254780190|r 126 SPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYA 205 (463)
Q Consensus 126 ~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~ 205 (463)
.+|| +|.+|+|+.+||.-|.....+...+++.|..+.+.|.++|.+|++++|+||||+|+|+|+|||.+|+.|.
T Consensus 115 ~~iH------~G~TS~DI~dta~~L~lk~al~~vi~~~l~~l~~~L~~~a~~~~~~~mlgRTHgQ~A~PtT~Gk~~a~~~ 188 (456)
T PRK09285 115 EFIH------FACTSEDINNLSHALMLKEAREEVLLPALREIIDALKALAHEYADVPMLSRTHGQPATPTTLGKEMANVA 188 (456)
T ss_pred CEEE------ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 0055------3535898872699999999999999999999999999999984656310000476663412799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC----CCCH-HHHHHHHHHHHCCCCEECCHHHHHHHCCHHHHHHHHH
Q ss_conf 9998228999997885300668870110454436----3557-9999999986088507642078876124128998999
Q gi|254780190|r 206 TQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTP----VGFA-EKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280 (463)
Q Consensus 206 ~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~----~~f~-~~~~~~La~~tgl~~~~a~n~~~a~~~rD~~~e~~~~ 280 (463)
+.|.|+++||+... ....+|| |||| +|++ |+.+ ..+.+.+.+.+||.+.+... .+.+||.++++.+.
T Consensus 189 ~rl~r~~~rl~~~~---~~gKf~G-AvGt-~~A~~~~~p~~dw~~~~~~f~~~LGL~~~~~tT---Qi~~~D~~ae~~~~ 260 (456)
T PRK09285 189 YRLERQIKQLAAVE---ILGKING-AVGN-YNAHLAAYPEVDWHAFSREFVTSLGLTWNPYTT---QIEPHDYIAELFDA 260 (456)
T ss_pred HHHHHHHHHHHHHH---HHHHHCC-CCCC-CHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCCCHHHHHHHHH
T ss_conf 99999999999988---8888444-5454-046777547888899999999976999888877---73663189999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHH
Q ss_conf 99876438887999999827733472167506--889875644554562467887652001---2101235553223457
Q gi|254780190|r 281 INTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAH---IFGNHAAITFANSQGH 355 (463)
Q Consensus 281 L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~q---V~G~d~ti~~a~~~G~ 355 (463)
|+.++.+|.|+|.|++++.| ++|+..| +.|.|||+|||||||+.+|..-+.|.- ++.+ .+-.+.-+ .
T Consensus 261 l~~i~~~l~~l~~Di~~~is-----~~~~~e~~~~gevGSStMPhKrNPI~~Enaegnl~la~~l~~~-~~~~l~~s--r 332 (456)
T PRK09285 261 VARFNTILIDLDRDVWGYIS-----LGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEH-LAAKLPIS--R 332 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCHH--H
T ss_conf 99985679999899999998-----7777424689997158887452860356443489999999999-98746657--8
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHCCEECHHHHHHHHHCCCCEE-----EECCHHHHHHHH
Q ss_conf 66530023443224458999------999---9999999987349007899998874397366-----201105538999
Q gi|254780190|r 356 FELNVYKPMIAYNVLQSIQL------LSD---SIDSFTINCIEGIQARKENIQLSLNRSLMLV-----TALTSKIGYDNA 421 (463)
Q Consensus 356 lELNv~~Plia~~ll~S~~l------L~~---a~~~f~~~~i~gl~vn~erm~~~l~~s~~lv-----TaL~p~iGy~~a 421 (463)
|| ..+-+|... +.. ++.+. .+.+++|+||+++|++||+.+..+. |.|. +.|++.|
T Consensus 333 ~q---------RDLtdSt~~R~igva~~~~~ia~~~~-~~gl~~L~vn~~~m~~nL~~~~~ilaEav~~~lr-~~g~~~a 401 (456)
T PRK09285 333 WQ---------RDLTDSTVLRNLGVAFGYSLIAYDSL-LKGLSKLEVNEARLAADLDANWEVLAEPIQTVMR-RYGIENP 401 (456)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEECHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCCH
T ss_conf 77---------75237788888776899999999999-9874270798999998885083067999999999-8089779
Q ss_pred HHHHHHHHHCC----CCHHHHHHHCCCCCHHHHHH--HCCHHHHCC
Q ss_conf 99999999829----99899999858999889998--518898438
Q gi|254780190|r 422 SMIAKKAHHNS----TTLKEEAIASGLISATEYDL--IVKPEKMIY 461 (463)
Q Consensus 422 ~~iak~A~~~g----~~l~e~~~~~g~ls~~eld~--lldP~~mt~ 461 (463)
++.+|+.-..+ .++++.+.... ++++.-++ -|+|++|+|
T Consensus 402 yE~~k~ltrg~~~~~~~l~~~~~~l~-~~~~~k~~L~~L~P~~YiG 446 (456)
T PRK09285 402 YEKLKELTRGKRITAEALQEFIDGLD-LPEEAKARLKALTPANYIG 446 (456)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHCCCHHCCC
T ss_conf 99999986567666899999998179-9989999998299340031
No 42
>cd01594 Lyase_I_like Lyase class I_like. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively.
Probab=100.00 E-value=7.8e-41 Score=293.00 Aligned_cols=214 Identities=38% Similarity=0.506 Sum_probs=188.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 30578999999732357986430744653012571234456789998663368789999999999999987507864321
Q gi|254780190|r 106 VNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIG 185 (463)
Q Consensus 106 ~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~G 185 (463)
++++++++..+..++ .||++||++++|+||+.+|++++.....+ ..+.+.+..+..++..++++|++++|+|
T Consensus 16 i~~~L~~~~~~~~~~-------~~~~~~~~~~~s~~d~~~t~~~~~~~~~l-~~~~~~l~~~~~~l~~~ae~~~~~~~~~ 87 (231)
T cd01594 16 VEEVLAGRAGELAGG-------LHGSALVHKGRSSNDIGTTALRLALRDAL-DDLLPLLKALIDALALKAEAHKGTVMPG 87 (231)
T ss_pred HHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 999999999998678-------89877778898811399999999999999-9999999999999999999817986336
Q ss_pred HHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHH
Q ss_conf 44001760031999999999999822899999788530066887011045443635579999999986088507642078
Q gi|254780190|r 186 RTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKF 265 (463)
Q Consensus 186 RTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~ 265 (463)
|||+|+|+|+|||++|.+|.+.+.|+++||..+
T Consensus 88 ~th~q~A~p~t~g~~l~~~~~~l~~~~~~l~~~----------------------------------------------- 120 (231)
T cd01594 88 RTHLQDAQPVTLGYELRAWAQVLGRDLERLEEA----------------------------------------------- 120 (231)
T ss_pred CCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_conf 446767731209999999999999999999985-----------------------------------------------
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 87612412899899999876438887999999827733472167506889875644554562467887652001210123
Q gi|254780190|r 266 EALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHA 345 (463)
Q Consensus 266 ~a~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ 345 (463)
+++++++.|+.++.+|+|||+|+++++|+|..+++|..++ .++||||||||+||+.+|.+++.+.++.|+..
T Consensus 121 -------~~a~~~~~l~~~~~~l~~ia~d~~~~~~~~~~~~~~~~~~-~~~gSS~mp~K~Np~~~e~~~~~~~~~~~~~~ 192 (231)
T cd01594 121 -------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAELVRGLAGLVIGNLV 192 (231)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -------8999999999999989999999999857675543135566-78866678988796699999999999982399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5553223457665300234432244589999999999
Q gi|254780190|r 346 AITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDS 382 (463)
Q Consensus 346 ti~~a~~~G~lELNv~~Plia~~ll~S~~lL~~a~~~ 382 (463)
.+.....+++++.|...+.+...+.+++..+.+.+..
T Consensus 193 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~ 229 (231)
T cd01594 193 AVLTALKGGPERDNEDSPSMREILADSLLLLIDALRL 229 (231)
T ss_pred HHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999984571477655897899899899999999997
No 43
>KOG2700 consensus
Probab=100.00 E-value=1.3e-32 Score=238.01 Aligned_cols=379 Identities=21% Similarity=0.175 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCCCCCCCCCH--HHCCCCCCCCCCCHHHHHHH--HHHHHCCC
Q ss_conf 99999999999999808999899999999999-998587411265002--20242100168730578999--99973235
Q gi|254780190|r 47 ALGIIKQAAARVNIELGKLDPKIGEAIVKASE-EVINGKLDDHFPLVV--WQTGSGTQSNMNVNEVISNR--AIEILGGV 121 (463)
Q Consensus 47 a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~-ei~~g~~~d~Fpv~v--~q~GsGTs~nMN~NEVIanr--a~e~~g~~ 121 (463)
-..++-.|-|.....++.++++..+.+...|+ |.++ |..-=|.+. |+. |.+.. -.+...
T Consensus 34 r~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d--~~~l~~ee~r~~hd------------Vmahvh~~~~~cp-- 97 (481)
T KOG2700 34 RRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENID--FTALSPEEGRYRHD------------VMAHVHSFGELCP-- 97 (481)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC--HHHCCHHHHHHCCC------------HHHHHHHHHHHCC--
T ss_conf 6778866202313785213499999988521552542--33338454130443------------8999999976363--
Q ss_pred CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEECCHHHHH
Q ss_conf 79864307446530125712344567899986633687899999999999999875078643214400176003199999
Q gi|254780190|r 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEF 201 (463)
Q Consensus 122 ~g~~~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~ 201 (463)
+.-..+| .|.++.++-+.+--+... ...+.+++-|...++-|...+.+|+++++.||||+|+|+|+|||.+.
T Consensus 98 -~aagiih------lgatsc~vtdnadli~~r-d~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~ 169 (481)
T KOG2700 98 -IAAGIIH------LGATSCFVTDNADLIELR-DASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRM 169 (481)
T ss_pred -HHCCEEE------EEEEEEEECCCCCCEECH-HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHH
T ss_conf -0105477------420236615784201304-17999999999999999999987113400141367540155799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCC---CCCHHHH---HHHHHHHHCCCCEECCHHHHHHHCCHHHH
Q ss_conf 99999998228999997885300668870110454436---3557999---99999860885076420788761241289
Q gi|254780190|r 202 SGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTP---VGFAEKV---AQNIRDITGLPFITAPNKFEALACHDAIA 275 (463)
Q Consensus 202 ~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~---~~f~~~~---~~~La~~tgl~~~~a~n~~~a~~~rD~~~ 275 (463)
.-|..++.++++++..+++++....++| |.||--+-. .+-..++ .+-.++..|+ .+..-..-.+.+|+..+
T Consensus 170 ~~~~qel~~~l~~f~~~~~~~~~~~~kg-a~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf--~~~~~~TGQt~sr~~~~ 246 (481)
T KOG2700 170 CLWIQELLRDLERFHRARTDVRFRGLKG-ATGTQASFLSLFLGDMDKVEKLDSLVTKELGF--VPMYIVTGQTYSRKTDA 246 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCHHHH
T ss_conf 9989999999999998631200156652-13018888886335188899899999998188--86554458867831578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q ss_conf 9899999876438887999999827733472167506--88987564455456246788765200121012355-53223
Q gi|254780190|r 276 FCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAI-TFANS 352 (463)
Q Consensus 276 e~~~~L~~la~~L~Kia~Dirll~SGPr~g~gEi~lp--~~q~GSSiMP~K~NPv~~E~i~~~a~qV~G~d~ti-~~a~~ 352 (463)
++...|+.+..+..|+|.|||+++. |+|+..| +.|.|||.||+||||+-||.+...+..++..-... ..++-
T Consensus 247 ~~~~~la~lgat~~k~~Tdirll~~-----~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~~~~ 321 (481)
T KOG2700 247 EEVAPLASLGATAHKYATDIRLLAK-----FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNTASV 321 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999888999999999999999-----98752550015555556887778712678758999987777777666777
Q ss_pred HHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHCCCCE------EEECCHHHH-HHHH
Q ss_conf 45766--5--30023443224458999999999999998734900789999887439736------620110553-8999
Q gi|254780190|r 353 QGHFE--L--NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLML------VTALTSKIG-YDNA 421 (463)
Q Consensus 353 ~G~lE--L--Nv~~Plia~~ll~S~~lL~~a~~~f~~~~i~gl~vn~erm~~~l~~s~~l------vTaL~p~iG-y~~a 421 (463)
++ +| + ..+ | +-++...-+-+++.-.-..+...|+.|.+++|++++..-+.. .-+|.+..| |+.|
T Consensus 322 qw-~Ertl~dSa~-~---rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~a 396 (481)
T KOG2700 322 QW-HERTLDDSAN-R---RIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEA 396 (481)
T ss_pred HH-HHCCCCCCCC-C---CEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 77-6503453336-5---33465888877889998898984100152788888876311899999999988700129999
Q ss_pred HHH----HHHH----HHCCCCHHHHHHH----CCCCCHHHHHHHCCHHHHCCC
Q ss_conf 999----9999----9829998999998----589998899985188984388
Q gi|254780190|r 422 SMI----AKKA----HHNSTTLKEEAIA----SGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 422 ~~i----ak~A----~~~g~~l~e~~~~----~g~ls~~eld~lldP~~mt~P 462 (463)
++. ..+| .++|....++... .+....+|+|.+|||.+++|-
T Consensus 397 he~I~~L~~~a~~~v~~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~gr 449 (481)
T KOG2700 397 HEGIRKLSHQAAQVVKQEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFTGR 449 (481)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHCCCC
T ss_conf 99999999988889998648817899830242346248999864160204521
No 44
>pfam10415 FumaraseC_C Fumarase C C-terminus. Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle.
Probab=99.54 E-value=8.6e-15 Score=118.79 Aligned_cols=55 Identities=49% Similarity=0.705 Sum_probs=54.1
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCC
Q ss_conf 6620110553899999999999829998999998589998899985188984388
Q gi|254780190|r 408 LVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 408 lvTaL~p~iGy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lldP~~mt~P 462 (463)
++|+|+|+|||++|++|||+|+++|+++||++++.|++|++|+|++|||++||+|
T Consensus 1 lvTaL~P~IGY~~aa~IAk~A~~~g~sv~e~v~e~glls~~e~d~ll~p~~m~~P 55 (55)
T pfam10415 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55 (55)
T ss_pred CCCCCCCHHCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHCCCC
T ss_conf 9110334134399999999999929989999999399999999987799882897
No 45
>pfam10397 ADSL_C Adenylosuccinate lyase C-terminus. This is the C-terminal seven alpha helices of the structure whose full length represents the enzyme adenylosuccinate lyase. This sequence lies C-terminal to the conserved motif necessary for beta-elimination reactions, Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide, the eighth step of the de novo pathway, and the formation of adenosine monophosphate (AMP) from adenylosuccinate, the second step in the conversion of inosine monophosphate into AMP.
Probab=97.71 E-value=2.4e-05 Score=55.61 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=43.3
Q ss_pred ECCHH-HHHHHHHHH----HHHHHHCCCCHHHHHHHC----CCCCHHHHHHHCCHHHHCC
Q ss_conf 01105-538999999----999998299989999985----8999889998518898438
Q gi|254780190|r 411 ALTSK-IGYDNASMI----AKKAHHNSTTLKEEAIAS----GLISATEYDLIVKPEKMIY 461 (463)
Q Consensus 411 aL~p~-iGy~~a~~i----ak~A~~~g~~l~e~~~~~----g~ls~~eld~lldP~~mt~ 461 (463)
+|+++ +|++.|+++ +++|+++|++|+|++.+. +++|++++++++||++++|
T Consensus 12 ~L~~~glgR~~Ah~lVq~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~el~~l~dp~~ylg 71 (81)
T pfam10397 12 ALAEKGLGREEAYELVQRAAMKAWEEGRDLREVLLADPEVAAYLSEEELDALFDPAYYLG 71 (81)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHCCHHHHHHHCCHHHHHH
T ss_conf 998808988999999999999998839869999870989997746999998739999997
No 46
>KOG2700 consensus
Probab=94.81 E-value=0.35 Score=27.69 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=30.0
Q ss_pred HHHHH-HHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHH
Q ss_conf 99998-750786432144001760031999999999999822
Q gi|254780190|r 171 LTKKI-SDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNS 211 (463)
Q Consensus 171 L~~ka-~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~ 211 (463)
|.+++ +++.-+++.-+| +|.+.|.+.+++.+..+.-....
T Consensus 219 ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~lgat~ 259 (481)
T KOG2700 219 LDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLASLGATA 259 (481)
T ss_pred HHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999981888655445-88678315789999999888999
No 47
>pfam08328 ASL_C Adenylosuccinate lyase C-terminal. This domain is found at the C-terminus of adenylosuccinate lyase(ASL; PurB in E. coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain pfam00206. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate.
Probab=73.16 E-value=4.7 Score=20.16 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHCCEECHHHHHHHHHCCCCEEE-EC---CHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHCCCCCHHHHHHH--CC
Q ss_conf 873490078999988743973662-01---1055389999999999982999-----8999998589998899985--18
Q gi|254780190|r 387 CIEGIQARKENIQLSLNRSLMLVT-AL---TSKIGYDNASMIAKKAHHNSTT-----LKEEAIASGLISATEYDLI--VK 455 (463)
Q Consensus 387 ~i~gl~vn~erm~~~l~~s~~lvT-aL---~p~iGy~~a~~iak~A~~~g~~-----l~e~~~~~g~ls~~eld~l--ld 455 (463)
-+..|++|+++|.+.|++++-+.+ +. -.+-|++.+++..|+--. |+. +++...... ++++.-+++ |.
T Consensus 33 GL~ki~~N~~~i~~dL~~~weVLaEaiQtiLR~~g~~~~YE~lK~lTR-Gk~i~~~~~~~fI~~L~-i~~~~k~~Ll~Lt 110 (115)
T pfam08328 33 GLGKLEVNEARLAADLDANWEVLAEPIQTVMRRYGIPNPYEKLKELTR-GKRITKEDLREFIDGLD-IPEEAKARLLALT 110 (115)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-CCCCCHHHHHHHHHHCC-CCHHHHHHHHHCC
T ss_conf 987501579999999997789999999999998199989999999866-89899999999999579-9999999998287
Q ss_pred HHHHC
Q ss_conf 89843
Q gi|254780190|r 456 PEKMI 460 (463)
Q Consensus 456 P~~mt 460 (463)
|.+|+
T Consensus 111 P~~Yi 115 (115)
T pfam08328 111 PATYI 115 (115)
T ss_pred CCCCC
T ss_conf 03209
No 48
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=61.86 E-value=2.7 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=9.2
Q ss_pred CCHHHHHHHCCHHHHCC
Q ss_conf 99889998518898438
Q gi|254780190|r 445 ISATEYDLIVKPEKMIY 461 (463)
Q Consensus 445 ls~~eld~lldP~~mt~ 461 (463)
||+=|+|.=|+---|||
T Consensus 351 LSALEiD~~FNVNV~tg 367 (496)
T TIGR01584 351 LSALEIDKKFNVNVMTG 367 (496)
T ss_pred EEEECCCCCCCEEEEEC
T ss_conf 74000155676227706
No 49
>pfam05321 HHA Haemolysin expression modulating protein. This family consists of haemolysin expression modulating protein (HHA) homologues. YmoA and Hha are highly similar bacterial proteins downregulating gene expression in Yersinia enterocolitica and Escherichia coli, respectively.
Probab=59.27 E-value=9.5 Score=18.15 Aligned_cols=33 Identities=39% Similarity=0.495 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHH----HHHCCCCCCCCCCCHHH
Q ss_conf 8999899999999999----99858741126500220
Q gi|254780190|r 63 GKLDPKIGEAIVKASE----EVINGKLDDHFPLVVWQ 95 (463)
Q Consensus 63 G~l~~~~a~aI~~a~~----ei~~g~~~d~Fpv~v~q 95 (463)
..|+.+.-.+...|+| |+..||+.|..|-.||+
T Consensus 21 ~~L~~~e~~~f~~AaDHR~AEl~m~kLyDkvP~~VWk 57 (57)
T pfam05321 21 YKLPGDELEAFNSAADHRLAELTMGKLYDKVPASVWK 57 (57)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHCC
T ss_conf 5488899999999999999999973001006665359
No 50
>pfam02024 Leptin Leptin.
Probab=58.56 E-value=11 Score=17.72 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=35.0
Q ss_pred HHHCCCCEECCHHHHHHHCCHH-HHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 8608850764207887612412-89989999987-64388879999998
Q gi|254780190|r 252 DITGLPFITAPNKFEALACHDA-IAFCHGAINTS-ATALFKIANDIRFL 298 (463)
Q Consensus 252 ~~tgl~~~~a~n~~~a~~~rD~-~~e~~~~L~~l-a~~L~Kia~Dirll 298 (463)
+++|++|.|...++..+++.|- ++-|...|..+ ..+..-|+||+--|
T Consensus 35 rV~glDfIPg~~pi~sLs~mdqTLaiyqqILtsLps~nV~QI~NDlenL 83 (146)
T pfam02024 35 RVTGLDFIPGLHPILSLSKMDQTLAIYQQILTSLPSRNVIQISNDLENL 83 (146)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 0367543878640221888999999999999857733588988789999
No 51
>PRK04286 hypothetical protein; Provisional
Probab=54.71 E-value=9.3 Score=18.19 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCHH--------HHHHHHHHHH---H-HHCCCCCCCCCC---CHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999980899989--------9999999999---9-985874112650---022024210016873057899999973
Q gi|254780190|r 54 AAARVNIELGKLDPK--------IGEAIVKASE---E-VINGKLDDHFPL---VVWQTGSGTQSNMNVNEVISNRAIEIL 118 (463)
Q Consensus 54 AaA~an~~~G~l~~~--------~a~aI~~a~~---e-i~~g~~~d~Fpv---~v~q~GsGTs~nMN~NEVIanra~e~~ 118 (463)
..|.+-...|+.|.+ ..+-|.++++ - +++--|.||++- +++|.-++ +.+.|+.
T Consensus 32 gvaLap~RygLpPhp~E~~~l~~~r~kI~~~a~~advvvISHYHyDH~~p~~~~~Y~~~~~------------~~~~eiY 99 (294)
T PRK04286 32 GVSLAPRRYGLPPHPIELERLEEVREKILELAKKADVVTISHYHYDHHTPFYESVYEATSE------------EEYKEIY 99 (294)
T ss_pred CHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHCCCC------------CCHHHHH
T ss_conf 0211876679899809999999999999999842999999133666778553430102444------------2358885
Q ss_pred CCCCCCCCCCCHHHHHCCCC
Q ss_conf 23579864307446530125
Q gi|254780190|r 119 GGVMGSKSPVHPNDHVNLCQ 138 (463)
Q Consensus 119 g~~~g~~~~vHPndhVN~~q 138 (463)
+++.= + -=||++.+|+||
T Consensus 100 ~gK~~-~-~K~P~~~IN~SQ 117 (294)
T PRK04286 100 GGKIV-L-IKDPTENINWSQ 117 (294)
T ss_pred CCCEE-E-ECCCHHHCCHHH
T ss_conf 78589-9-819426438889
No 52
>PRK10945 hemolysin expression-modulating protein; Provisional
Probab=51.49 E-value=13 Score=17.15 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHH----HHHCCCCCCCCCCCHHH
Q ss_conf 8999899999999999----99858741126500220
Q gi|254780190|r 63 GKLDPKIGEAIVKASE----EVINGKLDDHFPLVVWQ 95 (463)
Q Consensus 63 G~l~~~~a~aI~~a~~----ei~~g~~~d~Fpv~v~q 95 (463)
..|+.+.-.....|+| |+.-||+.|..|-.|||
T Consensus 33 ~~L~~~el~~f~~AaDHR~AELtm~KlyDkVP~sVWk 69 (72)
T PRK10945 33 YELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWK 69 (72)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 4388899999999998889999970555217899877
No 53
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=46.06 E-value=19 Score=16.12 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=21.7
Q ss_pred CHHHHHHHCCCCCHHHHHHHCCHHHHCCC
Q ss_conf 98999998589998899985188984388
Q gi|254780190|r 434 TLKEEAIASGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 434 ~l~e~~~~~g~ls~~eld~lldP~~mt~P 462 (463)
.+.+.+++...|+.+|+++++.+...--|
T Consensus 573 ~lA~~LLEkETL~geEi~~Il~~~~~~p~ 601 (644)
T PRK10733 573 AMKDALMKYETIDAPQIDDLMARRDVRPP 601 (644)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf 99999998738589999999669999999
No 54
>pfam01527 Transposase_8 Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Probab=44.60 E-value=22 Score=15.66 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHC
Q ss_conf 999999998299989999985899988999851
Q gi|254780190|r 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIV 454 (463)
Q Consensus 422 ~~iak~A~~~g~~l~e~~~~~g~ls~~eld~ll 454 (463)
.++++++.+.|.++.++|.+.| +++..|-.|.
T Consensus 13 ~~~V~~~~~~g~sv~~var~~g-i~~~~l~~W~ 44 (75)
T pfam01527 13 ARAVKESLEPGASVSELAREHG-VSPATLYKWR 44 (75)
T ss_pred HHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHH
T ss_conf 9999999809984999999989-5999999999
No 55
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=44.53 E-value=21 Score=15.78 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=26.0
Q ss_pred CCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHH
Q ss_conf 668870110454436355799999999860885076420788761
Q gi|254780190|r 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALA 269 (463)
Q Consensus 225 ~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~ 269 (463)
+.++| ..|+| ...+...|++.+||++..+...|-.++
T Consensus 3 ItIsG-~pGsG-------~TTva~~lAe~~gl~~vsaG~iFR~~A 39 (179)
T COG1102 3 ITISG-LPGSG-------KTTVARELAEHLGLKLVSAGTIFREMA 39 (179)
T ss_pred EEECC-CCCCC-------CHHHHHHHHHHHCCCEEECCHHHHHHH
T ss_conf 99617-99997-------027999999982971562127999999
No 56
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=43.73 E-value=8.5 Score=18.48 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=17.7
Q ss_pred HHHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHH
Q ss_conf 99998750786432144001760031999999999
Q gi|254780190|r 171 LTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYA 205 (463)
Q Consensus 171 L~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~ 205 (463)
-.+++++-++.|-+=|==+ ||+ |.+|+.+=+
T Consensus 25 a~~LS~RL~N~vl~KRED~---QPV-fSFKLRGAY 55 (508)
T TIGR01124 25 AAKLSERLGNRVLLKREDL---QPV-FSFKLRGAY 55 (508)
T ss_pred HHHHHHHHCCEEEEEECCC---CCC-CHHHHHHHH
T ss_conf 8886888477179986377---984-101167899
No 57
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , . Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2. Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=43.09 E-value=17 Score=16.37 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHCCC---CCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC------
Q ss_conf 99999999999999875078---64321440017600319999999999998228999997885300-668870------
Q gi|254780190|r 161 LPTLRNLHVALTKKISDFQD---IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE-LAQGGT------ 230 (463)
Q Consensus 161 ~~~l~~L~~aL~~ka~~~~~---~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~-~~lGGt------ 230 (463)
...|++|++.|..-.++++. |+.+ +-+| +|=-..+-++.+.|+...+.+.. .++|=+
T Consensus 147 e~~L~~~i~~ln~v~~~t~~n~~v~i~--------LEtm-----AG~Gn~~G~~f~eLk~iI~~i~~~~r~GVClDTCH~ 213 (318)
T TIGR00587 147 EEGLDNLIESLNEVIEETKNNKFVIIV--------LETM-----AGQGNEIGRSFEELKYIIDGIKDKSRIGVCLDTCHT 213 (318)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEE--------EECC-----CCCCCCCCCCHHHHHHHHHHHEECCCEEEECCHHHH
T ss_conf 899999999999986531699828999--------7066-----875667788889999998532004730452222204
Q ss_pred -HHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCC
Q ss_conf -11045443635579999999986088507642078876----12412899899999876438887999-9998277334
Q gi|254780190|r 231 -AVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEAL----ACHDAIAFCHGAINTSATALFKIAND-IRFLGSGPRS 304 (463)
Q Consensus 231 -AvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n~~~a~----~~rD~~~e~~~~L~~la~~L~Kia~D-irll~SGPr~ 304 (463)
|.|.-+++..+|. .|.++..+..|+.|..+-+.=|+- +.+|+...+- .+.|.-| +|++...||.
T Consensus 214 FAaGYDI~T~~~~~-~v~~~f~~~vG~~ylka~HlNDSK~~~Gs~kDRHe~iG---------~G~IG~d~f~~~~~d~~~ 283 (318)
T TIGR00587 214 FAAGYDIRTVEDFE-KVLKEFDKVVGFKYLKAIHLNDSKNPLGSRKDRHENIG---------EGYIGFDAFRLLMQDERL 283 (318)
T ss_pred HHCCCCCCCHHHHH-HHHHHHHHHCCCEEEEEEEEECHHHCCCCCCCCCCCCC---------CCCCCHHHHHHHHCCCCC
T ss_conf 12146777777799-99987722015100333443000100365525511067---------886066889997437310
No 58
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.12 E-value=25 Score=15.32 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
Q ss_conf 8789999999999999987507864321440017
Q gi|254780190|r 158 HRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQD 191 (463)
Q Consensus 158 ~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~ 191 (463)
+.|.++++-+.--|+ ..-++.|-+--|+
T Consensus 114 e~lTDSmkmFrmGle------gGKP~aGe~GvQP 141 (333)
T COG3802 114 ESLTDSMKMFRMGLE------GGKPKAGEIGVQP 141 (333)
T ss_pred CCCCHHHHHHHHHCC------CCCCCCCCCCCCC
T ss_conf 443148999987503------7989988557685
No 59
>PRK09857 hypothetical protein; Provisional
Probab=40.74 E-value=25 Score=15.28 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999999999829998999998589998899985
Q gi|254780190|r 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLI 453 (463)
Q Consensus 419 ~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~l 453 (463)
+.+.+||+.-+++|.++..+..-.| ||++|+..+
T Consensus 257 ~~~~~iAr~mL~~G~~~~~I~k~TG-LS~eEl~~~ 290 (292)
T PRK09857 257 SKALHIAKIMLESGVPLADIMRFTG-LSEEELAAA 290 (292)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 9999999999986999899999969-799999986
No 60
>pfam11802 CENP-K Centromere-associated protein K. CENP-K is one of seven new CENP-A-nucleosome distal (CAD) centromere components (the others being CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and CENP-S) that are identified as assembling on the CENP-A nucleosome associated complex, NAC. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. CENP-K is centromere-associated through its interaction with one or more components of the CENP-A NAC.
Probab=39.28 E-value=27 Score=15.13 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 9999999999998587411265002202421001687
Q gi|254780190|r 69 IGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMN 105 (463)
Q Consensus 69 ~a~aI~~a~~ei~~g~~~d~Fpv~v~q~GsGTs~nMN 105 (463)
..+.+.+-|.|+-.--...|=-+..+.+++.+..+--
T Consensus 22 ~~eeLl~eCEelWk~me~~Q~kL~l~~~e~l~~sd~q 58 (273)
T pfam11802 22 AEEELLRECENIWKDMEECQSKLTLIGTETLPESDAQ 58 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7999999999999999999988865177778976400
No 61
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=39.06 E-value=27 Score=15.11 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEECCH
Q ss_conf 19999999999998228999997885300668870110454436355799999999860885076420
Q gi|254780190|r 196 TLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPN 263 (463)
Q Consensus 196 TlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna~~~f~~~~~~~La~~tgl~~~~a~n 263 (463)
....+.......+=+..++|..+=+++..+. ||.+-|.-.|--.+-++...++|+++.|..+...++
T Consensus 166 ~~~~~i~~~V~~iN~l~~~ia~~N~~I~~~~-g~~~~g~~andL~DqRD~ll~~Ls~~~~i~~~~~~~ 232 (495)
T TIGR02492 166 NINAEIKSAVTEINSLLKQIASLNKEIQQVE-GGKASGQDANDLLDQRDLLLKELSQLIGISVSENED 232 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 5655788999999999999998768864002-787787776778744999999988672603788268
No 62
>TIGR01544 HAD-SF-IE HAD-superfamily (subfamily IE) hydrolase, TIGR01544; InterPro: IPR006434 This family is a small group of metazoan sequences with one sequence from Arabidopsis thaliana. The sequences from mouse are annotated as pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB..
Probab=39.04 E-value=27 Score=15.15 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998228999997885
Q gi|254780190|r 197 LGQEFSGYATQVKNSIKRIEMTLDG 221 (463)
Q Consensus 197 lG~~~~~~~~~l~r~~~rL~~~~~~ 221 (463)
+-+-.+-|.-.|+...+..-+.+++
T Consensus 118 i~~iv~~s~~~lkdg~e~Ff~~Lq~ 142 (287)
T TIGR01544 118 IEEIVAKSDVVLKDGAEDFFEKLQR 142 (287)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999987567662471679999874
No 63
>COG2320 GrpB Uncharacterized conserved protein [Function unknown]
Probab=37.88 E-value=28 Score=14.99 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCHHCCCCCCCC
Q ss_conf 3199999999999982289999978--853006688701104544363
Q gi|254780190|r 195 LTLGQEFSGYATQVKNSIKRIEMTL--DGLYELAQGGTAVGTGLNTPV 240 (463)
Q Consensus 195 iTlG~~~~~~~~~l~r~~~rL~~~~--~~l~~~~lGGtAvGTGlna~~ 240 (463)
+.+--.=..|.+++.|..+||+.+. +.+..=-+|.|||. |+.+-+
T Consensus 18 v~l~p~dp~W~~~f~re~~rl~~a~g~~~l~veHIGSTAVp-gl~aKp 64 (185)
T COG2320 18 IELVPDDPAWPDEFLREAARLRIALGLPALRVEHIGSTAVP-GLPAKP 64 (185)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCCCC
T ss_conf 36641883667899999999999757823442330466768-866666
No 64
>pfam04223 CitF Citrate lyase, alpha subunit (CitF). In citrate-utilising prokaryotes, citrate lyase EC:4.1.3.6 cleaves intracellular citrate into acetate and oxaloacetate, and is organized as a functional complex consisting of alpha, beta, and gamma subunits. The gamma subunit serves as an acyl carrier protein (ACP), and has a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group. The citrate lyase is active only if this prosthetic group is acetylated; this acetylation is catalysed by an acetate:SH-citrate lyase ligase. The alpha subunit substitutes citryl for the acetyl group to form citryl-S-ACP. The beta subunit completes the reaction by cleaving the citryl to yield oxaloacetate and (regenerated) acetyl-S-ACP. This family represents the alpha subunit EC:2.8.3.10.
Probab=37.17 E-value=22 Score=15.66 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999998750786432144
Q gi|254780190|r 168 HVALTKKISDFQDIIKIGRT 187 (463)
Q Consensus 168 ~~aL~~ka~~~~~~~~~GRT 187 (463)
+.....+--++...+|-|+.
T Consensus 212 IA~~aa~vI~~sg~~kdGFS 231 (466)
T pfam04223 212 IARYAADVIVNSPYFKEGFS 231 (466)
T ss_pred HHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999985776537636
No 65
>TIGR02062 RNase_B exoribonuclease II; InterPro: IPR011804 This family consists of exoribonuclease II (RNase II), the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.; GO: 0003723 RNA binding, 0008859 exoribonuclease II activity, 0006401 RNA catabolic process.
Probab=36.50 E-value=29 Score=14.85 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=10.8
Q ss_pred HCCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf 1045-4436355799999999860
Q gi|254780190|r 232 VGTG-LNTPVGFAEKVAQNIRDIT 254 (463)
Q Consensus 232 vGTG-lna~~~f~~~~~~~La~~t 254 (463)
.|+| +|+|.||+....+.+.+++
T Consensus 419 ~gfGifNtH~GFd~~~~~~~~~lL 442 (664)
T TIGR02062 419 LGFGIFNTHAGFDPKNAENVVELL 442 (664)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 598658723787888999999999
No 66
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=36.01 E-value=29 Score=14.85 Aligned_cols=10 Identities=40% Similarity=0.338 Sum_probs=4.9
Q ss_pred HHHHCCCCCC
Q ss_conf 5300668870
Q gi|254780190|r 221 GLYELAQGGT 230 (463)
Q Consensus 221 ~l~~~~lGGt 230 (463)
++-.+.+||+
T Consensus 16 k~g~l~fGGg 25 (195)
T COG2059 16 KLGLLGFGGG 25 (195)
T ss_pred HHHHHHCCCH
T ss_conf 9878502868
No 67
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=35.35 E-value=30 Score=14.81 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=28.6
Q ss_pred CCCCCCCCHHHH-HHHHHHHHCCCCEECCHHHHHHHC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 544363557999-999998608850764207887612-4128998999998764388
Q gi|254780190|r 235 GLNTPVGFAEKV-AQNIRDITGLPFITAPNKFEALAC-HDAIAFCHGAINTSATALF 289 (463)
Q Consensus 235 Glna~~~f~~~~-~~~La~~tgl~~~~a~n~~~a~~~-rD~~~e~~~~L~~la~~L~ 289 (463)
|..+|.||+... .-+.|+..++|... .+|.-.. ...-+|=-|.=..||.+|.
T Consensus 138 GMP~P~GYRKALrLm~~AerF~~PIi~---fiDT~GAYPGigAEerGQsEAIA~NL~ 191 (329)
T TIGR00513 138 GMPAPEGYRKALRLMKMAERFNLPIIT---FIDTPGAYPGIGAEERGQSEAIAKNLR 191 (329)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEE---EECCCCCCCCCHHHHHCCHHHHHHHHH
T ss_conf 988796047999999877761798588---653888875620445052789999989
No 68
>KOG1251 consensus
Probab=35.16 E-value=22 Score=15.74 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCHH
Q ss_conf 3557999999998608850764207887612412
Q gi|254780190|r 240 VGFAEKVAQNIRDITGLPFITAPNKFEALACHDA 273 (463)
Q Consensus 240 ~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD~ 273 (463)
..-++.+++.+.+.+|+-+.+..|.-+.++.+..
T Consensus 129 ~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgT 162 (323)
T KOG1251 129 VESRESVAKDLTEETGYYLIHPYNHPSVIAGQGT 162 (323)
T ss_pred CCHHHHHHHHHHHHCCCEEECCCCCCCEEECCCH
T ss_conf 3209999999988628578678888564406656
No 69
>PRK13018 cell division protein FtsZ; Provisional
Probab=33.44 E-value=33 Score=14.53 Aligned_cols=99 Identities=28% Similarity=0.363 Sum_probs=46.9
Q ss_pred CCCCCHHH----HCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 86432144----0017600319999999999998228999997885300----668870110454436355799999999
Q gi|254780190|r 180 DIIKIGRT----HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE----LAQGGTAVGTGLNTPVGFAEKVAQNIR 251 (463)
Q Consensus 180 ~~~~~GRT----HlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~----~~lGGtAvGTGlna~~~f~~~~~~~La 251 (463)
..+.+|++ .+--+-| ..|.+. -..+.+.++..++.-.- ..||| -.||| + ..++.+++
T Consensus 73 ~ki~lG~~~T~GLGAG~~P-eiG~~A------Aees~~~I~~~l~g~DmVFItAGmGG-GTGTG--A-----APVIA~iA 137 (387)
T PRK13018 73 KKILIGKTLTRGLGAGGDP-EVGRKA------AEESRDEIKEVLKGADLVFVTAGMGG-GTGTG--A-----APVVAEIA 137 (387)
T ss_pred EEEEECCCCCCCCCCCCCH-HHHHHH------HHHHHHHHHHHHCCCCEEEEEECCCC-CCCCC--H-----HHHHHHHH
T ss_conf 2798577657889998883-899999------99829999999758986999953478-51377--7-----89999999
Q ss_pred HHHCC---CCEECCHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 86088---50764207887612412899-899999876438887999
Q gi|254780190|r 252 DITGL---PFITAPNKFEALACHDAIAF-CHGAINTSATALFKIAND 294 (463)
Q Consensus 252 ~~tgl---~~~~a~n~~~a~~~rD~~~e-~~~~L~~la~~L~Kia~D 294 (463)
+..|. .+++.|-.|+... |-..++ =...|+..+-+|.-|.||
T Consensus 138 ke~GaLtVavVT~PF~fEG~~-R~~~A~~Gl~~L~~~vDtlIvIpNd 183 (387)
T PRK13018 138 KEQGALVIGVVTKPFKFEGRA-RMQKAEEGIERLREAADTVIVIDNN 183 (387)
T ss_pred HHCCCEEEEEECCCHHHHHHH-HHHHHHHHHHHHHHHCCEEEEECHH
T ss_conf 981993999944895777689-9999999999999869969997328
No 70
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=32.74 E-value=34 Score=14.45 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCHHCC
Q ss_conf 99999999982289999----978853006688701104
Q gi|254780190|r 200 EFSGYATQVKNSIKRIE----MTLDGLYELAQGGTAVGT 234 (463)
Q Consensus 200 ~~~~~~~~l~r~~~rL~----~~~~~l~~~~lGGtAvGT 234 (463)
.|-.+...+....+.+. ...+|+ +.|||.++||
T Consensus 45 ~F~~lHe~~ee~y~~l~~~~DeiAERi--~~LGg~p~~t 81 (156)
T COG0783 45 NFFALHEKLEELYEELAEHVDEIAERI--RALGGVPLGT 81 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCC
T ss_conf 599999999999999999989999999--9859999523
No 71
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=32.12 E-value=35 Score=14.38 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=7.0
Q ss_pred HHCCCCHHHHHHHHHH
Q ss_conf 8089998999999999
Q gi|254780190|r 61 ELGKLDPKIGEAIVKA 76 (463)
Q Consensus 61 ~~G~l~~~~a~aI~~a 76 (463)
+.|.|+++..+.|.+.
T Consensus 11 ~~g~i~~~~~~~~l~~ 26 (274)
T TIGR03029 11 DAGKLSEDEAERILRL 26 (274)
T ss_pred HCCCCCHHHHHHHHHH
T ss_conf 8299899999999999
No 72
>pfam06755 DUF1219 Protein of unknown function (DUF1219). This family consists of several hypothetical proteins which seem to be specific to the Enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=31.85 E-value=32 Score=14.65 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 1257123445678999866336878999999999999998750786432144
Q gi|254780190|r 136 LCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRT 187 (463)
Q Consensus 136 ~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRT 187 (463)
.|.+=||+-=.. .......+++=..|.+++..+.++| +.+.++|.
T Consensus 34 YGLtLnDTpf~d------e~vI~ehIeaGIsl~dAvNfLVeKY-~LvRidr~ 78 (109)
T pfam06755 34 YGLTLNDTPFSD------ETVIQEHIEAGISLCDAVNFLVEKY-ALVRIDRR 78 (109)
T ss_pred CCCEECCCCCCC------HHHHHHHHHCCCCHHHHHHHHHHHH-HHHCCCCC
T ss_conf 397007887740------8999999992998999999999987-25303788
No 73
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=31.00 E-value=35 Score=14.38 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 4721675068898756445545
Q gi|254780190|r 304 SGLGELMLPENEPGSSIMPGKV 325 (463)
Q Consensus 304 ~g~gEi~lp~~q~GSSiMP~K~ 325 (463)
.|+=|+.+|..+.|++.+||+-
T Consensus 40 ~G~We~fiP~~~~G~~~i~H~s 61 (99)
T cd02854 40 FGVWEITIPPNEDGSPAIPHGS 61 (99)
T ss_pred CCEEEEEECCCCCCCCCCCCCC
T ss_conf 9669999279868860048898
No 74
>KOG0588 consensus
Probab=30.60 E-value=14 Score=17.01 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHCC
Q ss_conf 999999985874112650022024
Q gi|254780190|r 74 VKASEEVINGKLDDHFPLVVWQTG 97 (463)
Q Consensus 74 ~~a~~ei~~g~~~d~Fpv~v~q~G 97 (463)
.-||-||+.|+-+|-||-|||--|
T Consensus 176 HYA~PEIV~G~pYdG~~sDVWSCG 199 (786)
T KOG0588 176 HYAAPEIVSGRPYDGRPSDVWSCG 199 (786)
T ss_pred CCCCCHHHCCCCCCCCCCCCCHHH
T ss_conf 457825433887788754220267
No 75
>KOG3938 consensus
Probab=30.46 E-value=37 Score=14.20 Aligned_cols=14 Identities=7% Similarity=0.275 Sum_probs=7.6
Q ss_pred EECHHHHHHHHHCC
Q ss_conf 00789999887439
Q gi|254780190|r 392 QARKENIQLSLNRS 405 (463)
Q Consensus 392 ~vn~erm~~~l~~s 405 (463)
+.|.....+.+++|
T Consensus 290 ~~n~~efaeaides 303 (334)
T KOG3938 290 KENPDEFAEAIDES 303 (334)
T ss_pred CCCHHHHHHHHHHC
T ss_conf 57989999985121
No 76
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=30.41 E-value=32 Score=14.65 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=14.5
Q ss_pred HHHHHHHH-----HHHCCCCHHHHHHHCCC
Q ss_conf 99999999-----99829998999998589
Q gi|254780190|r 420 NASMIAKK-----AHHNSTTLKEEAIASGL 444 (463)
Q Consensus 420 ~a~~iak~-----A~~~g~~l~e~~~~~g~ 444 (463)
.+.+++++ +-.-|++|.|+-.+-++
T Consensus 243 ~~~~l~~~lpSs~S~dYGkPF~eiFk~a~~ 272 (312)
T cd00545 243 AAEELAKELPSSASRDYGKPFAEVFKEADY 272 (312)
T ss_pred HHHHHHHHCCCCCHHHCCCCHHHHHHHCCC
T ss_conf 899999758876713309748999987599
No 77
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=29.74 E-value=38 Score=14.12 Aligned_cols=102 Identities=23% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCCCHHH----HCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-CCCCCCHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6432144----001760031999999999999822899999788530---0-6688701104544363557999999998
Q gi|254780190|r 181 IIKIGRT----HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLY---E-LAQGGTAVGTGLNTPVGFAEKVAQNIRD 252 (463)
Q Consensus 181 ~~~~GRT----HlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~---~-~~lGGtAvGTGlna~~~f~~~~~~~La~ 252 (463)
-+.+|+. |+.-+-|- +|.+. +++ +.+.++...+... . ..||| ..||| +. .++.++++
T Consensus 47 ki~iG~~~t~G~GaG~~pe-~G~~a---A~e---~~~~I~~~l~~~d~vfi~AGmGG-GTGtG--aa-----PviA~~Ak 111 (303)
T cd02191 47 RVLIGQARTKGLGAGANPE-LGAEA---AEE---VQEAIDNIPVHVDMVFITAGLGG-GTGTG--GA-----PVVAEHLK 111 (303)
T ss_pred EEECCCCCCCCCCCCCCCH-HHHHH---HHH---HHHHHHHHHCCCCEEEEEEECCC-CCCCC--HH-----HHHHHHHH
T ss_conf 8972766668898988945-89999---999---99999998656998999984189-70042--89-----99999999
Q ss_pred HHCCC---CEECCHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 60885---0764207887612412899-89999987643888799999982
Q gi|254780190|r 253 ITGLP---FITAPNKFEALACHDAIAF-CHGAINTSATALFKIANDIRFLG 299 (463)
Q Consensus 253 ~tgl~---~~~a~n~~~a~~~rD~~~e-~~~~L~~la~~L~Kia~Dirll~ 299 (463)
..|.. +...|-.|+.-. |-..++ -...|+..+-++.-|.||- |+.
T Consensus 112 e~g~ltvavVt~PF~~EG~~-r~~~A~~gl~~L~~~~D~~Ivi~Nd~-L~~ 160 (303)
T cd02191 112 RIGTLTVAVVTLPFSDEGGI-RMLNAAEGFQTLVREVDNLMVIPNEK-LRQ 160 (303)
T ss_pred HCCCCEEEEEECCHHHHHHH-HHHHHHHHHHHHHHHCCEEEEECHHH-HHH
T ss_conf 75993899997872551199-99999999999998699799960689-986
No 78
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=29.36 E-value=29 Score=14.89 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 779988760877887789999999999999999999980899989999999999999
Q gi|254780190|r 24 AQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEV 80 (463)
Q Consensus 24 ~qT~Ra~~nf~i~~~~~~~~~i~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei 80 (463)
..|.|-+-.|+-...++|.+=+...-.|.+--...-+.+|.|+++.-.++..++.++
T Consensus 36 ~~~lR~ll~~~~~~~pi~i~eVEp~~~i~~~f~~~~MS~GalS~~a~~ala~~a~~~ 92 (367)
T pfam01645 36 IGALRDLLEFDYAEDPIPIEEVEPALEIKTRFCTGAMSYGALSEEAHEALAKAMNRL 92 (367)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 665554403388999876765599899763203355656552799999999999983
No 79
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452 Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=29.33 E-value=17 Score=16.44 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=57.4
Q ss_pred HHHHHCCC-CCC--CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998587-411--265002202421001687305789999997323579864307446530125712344567899986
Q gi|254780190|r 77 SEEVINGK-LDD--HFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACA 153 (463)
Q Consensus 77 ~~ei~~g~-~~d--~Fpv~v~q~GsGTs~nMN~NEVIanra~e~~g~~~g~~~~vHPndhVN~~qStND~~~TA~~la~~ 153 (463)
.||||.|| ..| .|.|-=|||= ..-.+.+.|....--|.|+ .-.|-+++|-
T Consensus 26 peE~i~GK~M~dhLRFavAyWHTf-----------------~~~G~DPFG~gT~~RPW~~-----~~~~~~~~A~----- 78 (437)
T TIGR02630 26 PEEVIGGKTMKDHLRFAVAYWHTF-----------------CGDGGDPFGGGTAERPWDK-----GGTDPMDKAK----- 78 (437)
T ss_pred CCCEECCCCHHHHHHHHHHHHHCC-----------------CCCCCCCCCCCCCCCCCCC-----CCCCHHHHHH-----
T ss_conf 101007862068876666764113-----------------7885689886535367777-----7544899998-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 6336878999999999999998750786432144-00176003199999999999982289999978853006688701
Q gi|254780190|r 154 ERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRT-HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTA 231 (463)
Q Consensus 154 ~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRT-HlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtA 231 (463)
.++ + ..=+=+.++..+| ++ |=.|-.|- |..+.-+..-|..=.+.|++-.+.-..=.|.|||
T Consensus 79 ~kv-D-------A~FEf~~KLgv~Y-------yCFHD~D~aPE--G~~L~E~~~nLd~~vd~~~~kq~~tg~KLLWGTA 140 (437)
T TIGR02630 79 AKV-D-------AAFEFFEKLGVPY-------YCFHDVDIAPE--GASLKETNANLDEIVDLIKEKQKETGVKLLWGTA 140 (437)
T ss_pred HHH-H-------HHHHHHHHCCCCE-------EEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
T ss_conf 878-9-------9999998718980-------55446102578--8778999999999999999999754883233655
No 80
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=28.90 E-value=39 Score=14.03 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999875078643214400176003199999999999982289999978
Q gi|254780190|r 172 TKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219 (463)
Q Consensus 172 ~~ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~ 219 (463)
-++|++| +.|.+-.--..-|-| ..+-|-.+-++++.+++..+..+.
T Consensus 91 m~lAekf-~~PvitfIDTpGA~p-g~~AEerGqaeaIA~~l~~m~~l~ 136 (256)
T PRK12319 91 MKQAEKF-GRPVVTFINTAGAYP-GVGAEERGQGEAIARNLMEMSDLK 136 (256)
T ss_pred HHHHHHH-CCCEEEEECCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999980-998799960798678-853210389999999999997699
No 81
>pfam02289 MCH Cyclohydrolase (MCH). Methenyl tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is involved in methanogenesis in bacteria and archaea, producing methane from carbon monoxide or carbon dioxide.
Probab=28.73 E-value=35 Score=14.38 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=10.9
Q ss_pred HHHCCCCHHHHHHHCCC
Q ss_conf 99829998999998589
Q gi|254780190|r 428 AHHNSTTLKEEAIASGL 444 (463)
Q Consensus 428 A~~~g~~l~e~~~~~g~ 444 (463)
+-.-|++|.|+-.+-++
T Consensus 256 S~dYGkPF~eiFk~a~~ 272 (312)
T pfam02289 256 SEDYGKPFYEIFKEANY 272 (312)
T ss_pred HHHCCCCHHHHHHHCCC
T ss_conf 23308758999987599
No 82
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=28.43 E-value=40 Score=13.98 Aligned_cols=24 Identities=29% Similarity=0.593 Sum_probs=13.3
Q ss_pred CCCCCCHHHH-HHHHHHHHCCCCEE
Q ss_conf 4363557999-99999860885076
Q gi|254780190|r 237 NTPVGFAEKV-AQNIRDITGLPFIT 260 (463)
Q Consensus 237 na~~~f~~~~-~~~La~~tgl~~~~ 260 (463)
..|.||+... .-++++..++|+..
T Consensus 131 ~~PeGYRKAlRlm~lAekf~~Pvit 155 (318)
T PRK05724 131 PRPEGYRKALRLMEMAERFGLPIIT 155 (318)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9917899999999999970997799
No 83
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=28.22 E-value=40 Score=13.95 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHCC
Q ss_conf 389999999999982999899999858999889998518
Q gi|254780190|r 417 GYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVK 455 (463)
Q Consensus 417 Gy~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~lld 455 (463)
.|++|.+|..+-.+.=..+.+.+++..-|+.+|++++++
T Consensus 467 ~Y~~A~~iL~e~~~~L~~~a~~Ll~~ETi~~~~~~~l~~ 505 (505)
T TIGR01241 467 AYKRAKQILTENRDELELLAKELLEKETITREEIKELLA 505 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999999864889999999888763588689999819
No 84
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=28.21 E-value=35 Score=14.32 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=11.2
Q ss_pred HHHCCCCHHHHHHHCCC
Q ss_conf 99829998999998589
Q gi|254780190|r 428 AHHNSTTLKEEAIASGL 444 (463)
Q Consensus 428 A~~~g~~l~e~~~~~g~ 444 (463)
+-.-|++|.|+-.+-++
T Consensus 256 S~dYGkpF~eiFk~~~~ 272 (312)
T TIGR03120 256 SDDYGKPFAEIFKEANY 272 (312)
T ss_pred HHHCCCCHHHHHHHCCC
T ss_conf 13308748999987599
No 85
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=28.04 E-value=36 Score=14.26 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 998999999999999
Q gi|254780190|r 65 LDPKIGEAIVKASEE 79 (463)
Q Consensus 65 l~~~~a~aI~~a~~e 79 (463)
-+.+.+..+.+|-..
T Consensus 45 ~~~Kl~~SleEaI~~ 59 (513)
T COG3051 45 RDRKLCASLEEAIRR 59 (513)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 613678879999997
No 86
>CHL00176 ftsH cell division protein; Validated
Probab=27.95 E-value=41 Score=13.92 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred CHHHHHHHCCCCCHHHHHHHCCHHHHCCC
Q ss_conf 98999998589998899985188984388
Q gi|254780190|r 434 TLKEEAIASGLISATEYDLIVKPEKMIYP 462 (463)
Q Consensus 434 ~l~e~~~~~g~ls~~eld~lldP~~mt~P 462 (463)
.+.+.+++...|+.+|++++++...-.-|
T Consensus 596 ~LAe~LLekETL~geEi~~Il~~~~~~pp 624 (631)
T CHL00176 596 RLVELLLEKETIDGDEFREIVSEYTILPP 624 (631)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf 99999998482589999999724999989
No 87
>TIGR02869 spore_SleB spore cortex-lytic enzyme; InterPro: IPR014224 The entry represents the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. SleB is stored in an inactive form in the spore and activated during germination..
Probab=27.42 E-value=24 Score=15.39 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=5.9
Q ss_pred CCCCHHHHHHHHHHCC
Q ss_conf 2432177998876087
Q gi|254780190|r 19 DRYWGAQAQRSLENFK 34 (463)
Q Consensus 19 ~~~yG~qT~Ra~~nf~ 34 (463)
|-+||.+|..|+.+|.
T Consensus 34 DG~FG~~Ty~AVr~FQ 49 (232)
T TIGR02869 34 DGVFGVKTYKAVRKFQ 49 (232)
T ss_pred CEEECCHHHHHHHHHH
T ss_conf 1054736999999988
No 88
>PRK09956 hypothetical protein; Provisional
Probab=27.28 E-value=42 Score=13.84 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 899999999999829998999998589998899985
Q gi|254780190|r 418 YDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLI 453 (463)
Q Consensus 418 y~~a~~iak~A~~~g~~l~e~~~~~g~ls~~eld~l 453 (463)
++.+.++|+.-++.|.++..+..-.| ||++|+..+
T Consensus 272 ~e~~~eiAr~mL~~G~~~~~I~~~TG-LS~~El~~~ 306 (308)
T PRK09956 272 HEQAIKIALRMLEQGFDRDIVLAATQ-LSEADLAAN 306 (308)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHH
T ss_conf 99999999999984999899999959-899999863
No 89
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=27.17 E-value=39 Score=14.04 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=10.5
Q ss_pred HHHCCCCHHHHHHHCCC
Q ss_conf 99829998999998589
Q gi|254780190|r 428 AHHNSTTLKEEAIASGL 444 (463)
Q Consensus 428 A~~~g~~l~e~~~~~g~ 444 (463)
+-.-|++|.|+-.+-++
T Consensus 258 S~dYGkPF~eiFk~~~~ 274 (318)
T PRK02264 258 SRDYGKPFAEIFKEANY 274 (318)
T ss_pred HHHCCCCHHHHHHHCCC
T ss_conf 03308647999987599
No 90
>PRK08349 hypothetical protein; Validated
Probab=26.34 E-value=28 Score=15.00 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=17.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88765200121012355532234576653002344322445
Q gi|254780190|r 331 EAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQ 371 (463)
Q Consensus 331 E~i~~~a~qV~G~d~ti~~a~~~G~lELNv~~Plia~~ll~ 371 (463)
|.+-||+.|.+.|-.++..+. ++-++.|||.++=-+
T Consensus 113 EsLGQVASQTl~NL~~i~~~~-----~~pVlRPLig~DK~E 148 (198)
T PRK08349 113 DSLGQVASQTLDNLMVISTAT-----DLPILRPLIGLDKEE 148 (198)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCCHHH
T ss_conf 216788899998899998750-----676647766799899
No 91
>pfam12548 DUF3740 Sulfatase protein. This domain family is found in eukaryotes, and is typically between 144 and 173 amino acids in length. The family is found in association with pfam00884.
Probab=26.19 E-value=44 Score=13.72 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEE
Q ss_conf 430744653012571234456789998663368789999999999999987507864321440017600
Q gi|254780190|r 126 SPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATP 194 (463)
Q Consensus 126 ~~vHPndhVN~~qStND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~GRTHlQ~A~P 194 (463)
=+|-|||.||+ +|++|...- ++. + =...++.++++|..|-+.-+++ |.||..--|
T Consensus 82 C~Il~ndtV~C---~~~iY~s~~--aWk----~-~k~~ID~eI~~Lq~KIk~Lkev----rghLk~~rP 136 (144)
T pfam12548 82 CFILANDTVNC---SNVIYESEK--AWK----D-HKLQIDMEIETLKDKIKNLKEV----KGHLKERRP 136 (144)
T ss_pred EEEECCCCEEE---CCCCCCCHH--HHH----H-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC
T ss_conf 89803896875---420002677--888----8-9999999999999999989999----988754697
No 92
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=26.17 E-value=44 Score=13.71 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=10.5
Q ss_pred CCCCCHHHH-HHHHHHHHCCCCEE
Q ss_conf 363557999-99999860885076
Q gi|254780190|r 238 TPVGFAEKV-AQNIRDITGLPFIT 260 (463)
Q Consensus 238 a~~~f~~~~-~~~La~~tgl~~~~ 260 (463)
.|.||+... .-++++..++|+..
T Consensus 136 ~PeGYRKAlRlm~lAekf~~Pvit 159 (322)
T CHL00198 136 SPGGYRKALRLMEHANRFGLPILT 159 (322)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 859999999999999970997799
No 93
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN; InterPro: IPR011966 This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardised in . This enzyme is related to aldehyde dehydrogenases..
Probab=25.40 E-value=45 Score=13.62 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=49.3
Q ss_pred HHCCCCC--CCCCHHHH----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHCC
Q ss_conf 6087788--77899999----------99999999999999980899989999999999999858-74112650022024
Q gi|254780190|r 31 ENFKIGE--EKQPLVII----------RALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVING-KLDDHFPLVVWQTG 97 (463)
Q Consensus 31 ~nf~i~~--~~~~~~~i----------~a~~~vK~AaA~an~~~G~l~~~~a~aI~~a~~ei~~g-~~~d~Fpv~v~q~G 97 (463)
=|||+=| ||+-|.|| -+=++|-.|+-+.--|.|+||+=.-+.|+=.+-++++- .+.| .|.=||
T Consensus 156 FNFPvWGlLEKlAPafLAGvP~l~KPATaTA~va~AlVk~~~eSgLlPeGalqLi~GS~GDLLDhLd~~D----~v~FTG 231 (690)
T TIGR02278 156 FNFPVWGLLEKLAPAFLAGVPALAKPATATAYVAEALVKLIVESGLLPEGALQLICGSAGDLLDHLDSRD----VVAFTG 231 (690)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC----EEEECC
T ss_conf 4688244677754676536762204888157999999999885177600268877411667998706996----599856
Q ss_pred CC
Q ss_conf 21
Q gi|254780190|r 98 SG 99 (463)
Q Consensus 98 sG 99 (463)
|-
T Consensus 232 S~ 233 (690)
T TIGR02278 232 SA 233 (690)
T ss_pred CH
T ss_conf 37
No 94
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase; InterPro: IPR004399 Phosphomethylpyrimidine kinase (2.7.4.7 from EC), also known as HMP-phosphate kinase, catalyses the phosphorylation of HMP-P to HMP-PP in the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine during the biosynthesis of thiamine.; GO: 0008972 phosphomethylpyrimidine kinase activity, 0009228 thiamin biosynthetic process.
Probab=24.68 E-value=46 Score=13.53 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 71234456789998663368789999999999999987507864321
Q gi|254780190|r 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIG 185 (463)
Q Consensus 139 StND~~~TA~~la~~~~~~~~L~~~l~~L~~aL~~ka~~~~~~~~~G 185 (463)
=|=|+|..|+ ++.+..-..|.+++ ...+.+...|-+|.+++-+|
T Consensus 211 GTGCTlSaAI--aA~LA~G~~l~~Av-~~AK~fv~~Ai~~~~~l~~G 254 (264)
T TIGR00097 211 GTGCTLSAAI--AANLAKGLSLKDAV-KEAKEFVTGAIKYSDDLSIG 254 (264)
T ss_pred CCHHHHHHHH--HHHHHCCCCHHHHH-HHHHHHHHHHHHCCCCEEEC
T ss_conf 7112799999--99863597878999-99999999997478805117
No 95
>KOG2675 consensus
Probab=23.30 E-value=49 Score=13.36 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 87643888799999
Q gi|254780190|r 283 TSATALFKIANDIR 296 (463)
Q Consensus 283 ~la~~L~Kia~Dir 296 (463)
.+..-|-|...|..
T Consensus 276 ~iTsgLkkVt~dmk 289 (480)
T KOG2675 276 GITSGLKKVTDDMK 289 (480)
T ss_pred HHHHHHHHCCHHHH
T ss_conf 15554210784664
No 96
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.08 E-value=43 Score=13.78 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=51.1
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC-------CC--CCCCCHHHHHHHHHHHHCCCCEE-CC
Q ss_conf 0031999999999999822899999788530066887011045-------44--36355799999999860885076-42
Q gi|254780190|r 193 TPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTG-------LN--TPVGFAEKVAQNIRDITGLPFIT-AP 262 (463)
Q Consensus 193 ~PiTlG~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGGtAvGTG-------ln--a~~~f~~~~~~~La~~tgl~~~~-a~ 262 (463)
=|+++|+....=..+++|-++.|---.. ...|+|++ +..= +| -.+.++...++.|.+..|.|+.. +|
T Consensus 165 Gpt~LGF~~r~D~~Ei~RLl~~lGi~VN--vV~P~Gas-~~dl~rL~~A~~Nv~lYrE~g~~aa~~Le~~fg~P~~~~~P 241 (524)
T PRK02910 165 GPTALGFHNRDDLTELRRLLATLGIDVN--VVAPLGAS-PADLKRLPAAWFNVVLYREIGESAAEYLEREFGMPYVTTVP 241 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEE--EEECCCCC-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCEECCCC
T ss_conf 7775676877889999999987596688--98049999-78885102040746425877799999999885897010347
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 078876124128998999998764
Q gi|254780190|r 263 NKFEALACHDAIAFCHGAINTSAT 286 (463)
Q Consensus 263 n~~~a~~~rD~~~e~~~~L~~la~ 286 (463)
+-..+.++.+.++...|+.-..
T Consensus 242 --iGv~~T~~flrel~~~lg~~~~ 263 (524)
T PRK02910 242 --IGVGATARFIREVAELLNLDGA 263 (524)
T ss_pred --CCHHHHHHHHHHHHHHHCCCCC
T ss_conf --5417999999999999689964
No 97
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; InterPro: IPR010966 This entry represents the NqrB subunit of the six-protein (NqrA to NqrF), membrane-associated Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria . The Nqr complex catalyses the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of sodium ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. Both the NqrB and NqrC subunits contain a FMN cofactor that is covalently attached by a phosphate group to a threonine residue .; GO: 0010181 FMN binding, 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=21.73 E-value=51 Score=13.25 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHCCCCCC-CCCCHHHHHHHHHHHHCCCCEECCHHHHHHHCCH
Q ss_conf 99999999999---9822899999788530066887011045443-6355799999999860885076420788761241
Q gi|254780190|r 197 LGQEFSGYATQ---VKNSIKRIEMTLDGLYELAQGGTAVGTGLNT-PVGFAEKVAQNIRDITGLPFITAPNKFEALACHD 272 (463)
Q Consensus 197 lG~~~~~~~~~---l~r~~~rL~~~~~~l~~~~lGGtAvGTGlna-~~~f~~~~~~~La~~tgl~~~~a~n~~~a~~~rD 272 (463)
+-..|+.|.+. +.-|.-.|.+....+.--+.-| |++. |..|+.. ..--..+.|++--+.-|.|-.. -..
T Consensus 290 ~~sqfs~W~e~~PG~~~d~l~l~q~~~~v~g~~~eG-----GlGllP~~fd~a-y~~td~iyGiGkfs~mdaF~G~-i~G 362 (508)
T TIGR01937 290 LQSQFSLWAESFPGLVLDQLSLDQLQHNVTGPPAEG-----GLGLLPAQFDAA-YALTDVIYGIGKFSWMDAFLGN-IPG 362 (508)
T ss_pred HHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHC-CCC
T ss_conf 776564431047871002444887875422565465-----421330133357-7788777502002133212200-364
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCEE---------E-EECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 289989---999987643888799999982773347216---------7-50688987564455456246788
Q gi|254780190|r 273 AIAFCH---GAINTSATALFKIANDIRFLGSGPRSGLGE---------L-MLPENEPGSSIMPGKVNPTQCEA 332 (463)
Q Consensus 273 ~~~e~~---~~L~~la~~L~Kia~Dirll~SGPr~g~gE---------i-~lp~~q~GSSiMP~K~NPv~~E~ 332 (463)
.+-|.| -.+...-.-+.+||. .|.|.| .++|- | .|-..|.||.+=|.=.=|..-..
T Consensus 363 S~GEtSTlA~liGa~~l~~t~IAS-Wri~a~---~~~G~~~~~~lFn~Is~l~~Gq~G~~~~a~f~~p~~~hl 431 (508)
T TIGR01937 363 SLGETSTLAILIGAALLILTGIAS-WRIMAG---VMIGMIAMSTLFNAISVLIVGQSGSEANAMFFIPWYWHL 431 (508)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 302589999999899999985888-999999---999999999999898776506788778743447278999
No 98
>TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774 Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups.
Probab=20.65 E-value=55 Score=13.01 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHH-----HHCCCCCCHHHHHHHH
Q ss_conf 99876438887999--999827733472167506-8898756445545624678876-----5200121012355532
Q gi|254780190|r 281 INTSATALFKIAND--IRFLGSGPRSGLGELMLP-ENEPGSSIMPGKVNPTQCEAIT-----QVCAHIFGNHAAITFA 350 (463)
Q Consensus 281 L~~la~~L~Kia~D--irll~SGPr~g~gEi~lp-~~q~GSSiMP~K~NPv~~E~i~-----~~a~qV~G~d~ti~~a 350 (463)
+..+-.-+.||+.| |+- - + --|..+ ....=|=-|||..-|+.+.+|+ .+|.|++|.|+=|-.+
T Consensus 42 va~l~aE~~R~~~DPA~~~--d----e-~~i~e~~s~~vRSiF~vH~lS~~~a~lVRd~rv~~~ARQiLGSdVYvHQs 112 (278)
T TIGR02408 42 VAALRAELERLIADPAVDR--D----E-EAIVEKQSNAVRSIFEVHLLSEVLARLVRDERVVNAARQILGSDVYVHQS 112 (278)
T ss_pred HHHHHHHHHHHHCCCCCCC--C----C-CHHEECCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999998651753224--4----6-01010788825555311003225321113024666665651561244321
No 99
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.44 E-value=41 Score=13.86 Aligned_cols=71 Identities=24% Similarity=0.175 Sum_probs=30.3
Q ss_pred HHHHCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCHHCCCCCCCCCCHHHHHHHH
Q ss_conf 987507864321440017600319999999999998228999997885--30066887011045443635579999999
Q gi|254780190|r 174 KISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDG--LYELAQGGTAVGTGLNTPVGFAEKVAQNI 250 (463)
Q Consensus 174 ka~~~~~~~~~GRTHlQ~A~PiTlG~~~~~~~~~l~r~~~rL~~~~~~--l~~~~lGGtAvGTGlna~~~f~~~~~~~L 250 (463)
+.....-++.+|-|.-+.-..-|.- .-..+|..-..-+..-..+ +..=|.. |+|||..+.++....+.+.+
T Consensus 119 l~~~l~pIlCIGE~~~er~~g~~~~----vl~~Ql~~~~~~~~~~~~~iiIAYEPvW--AIGTG~~as~~~i~e~~~~I 191 (252)
T PTZ00333 119 LNNGLKVILCIGETLQEREAGQTSA----VLLTQLKAIAKKVKEDWDKVVIAYEPVW--AIGTGKVATPEQAQEVHAFI 191 (252)
T ss_pred HHCCCEEEEEECCCHHHHHCCCHHH----HHHHHHHHHHCCCHHHHHCEEEEECCHH--HCCCCCCCCHHHHHHHHHHH
T ss_conf 9859979999377599886467799----9999999987314132324189966765--35889999999999999999
Done!