RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus
Liberibacter asiaticus str. psy62]
(463 letters)
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 839 bits (2171), Expect = 0.0
Identities = 300/455 (65%), Positives = 357/455 (78%)
Query: 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGK 64
R E+DS G ++V D WGAQ QRSLENF IG E+ P +IRALG++K+AAA+ N ELG
Sbjct: 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGL 60
Query: 65 LDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGS 124
LD + +AIV+A++EVI GKLDDHFPLVVWQTGSGTQ+NMNVNEVI+NRAIE+LGGV+GS
Sbjct: 61 LDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGS 120
Query: 125 KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKI 184
K PVHPNDHVN+ QSSNDT+PTA+HIA A + RLLP L++L AL K +F+DI+KI
Sbjct: 121 KKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKI 180
Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244
GRTH QDATPLTLGQEFSGYA Q++++I RIE L LYELA GGTAVGTGLN GFAE
Sbjct: 181 GRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGFAE 240
Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304
KVA + ++TGLPF+TAPNKFEALA HDA+ GA+ T A +L KIANDIR+LGSGPR
Sbjct: 241 KVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRC 300
Query: 305 GLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM 364
GLGEL LPENEPGSSIMPGKVNPTQCEA+T V A + GN AAIT A S G+FELNV+KP+
Sbjct: 301 GLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPV 360
Query: 365 IAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMI 424
I YN+LQSI+LL+D+ SF C+ GI+ +E I L RSLMLVTAL IGYD A+ I
Sbjct: 361 IIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNPHIGYDKAAKI 420
Query: 425 AKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKM 459
AKKAH TLKE A+ G ++ E+D +V PEKM
Sbjct: 421 AKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 770 bits (1991), Expect = 0.0
Identities = 264/451 (58%), Positives = 323/451 (71%), Gaps = 1/451 (0%)
Query: 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGK 64
R E+DS G ++V D Y+GAQ QR+LENF I E+ P +IRAL ++K+AAA N ELG
Sbjct: 1 RIEKDSLGEVEVPADAYYGAQTQRALENFPISGERMPPELIRALALVKKAAALANAELGL 60
Query: 65 LDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGS 124
LD + +AIV+A +EVI GKLDD FPL VWQTGSGT +NMNVNEVI+NRA+E+LGG G
Sbjct: 61 LDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKKG- 119
Query: 125 KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKI 184
K PVHPND VN QSSND +P A HIA A ++ RLLP L L AL K +F DI+KI
Sbjct: 120 KYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADIVKI 179
Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244
GRTH QDA PLTLGQEFSGYA Q+ I RIE L+ L EL GGTAVGTGLN P G+AE
Sbjct: 180 GRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPGYAE 239
Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304
KVA + ++TGLPF+TAPN FEA A HDA+ GA+ T A +L KIAND+R L SGPR+
Sbjct: 240 KVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRA 299
Query: 305 GLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM 364
GLGE+ LP N+PGSSIMPGKVNP EA+ V A + GN AIT A S G ELNV+KP+
Sbjct: 300 GLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPV 359
Query: 365 IAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMI 424
IAYN+LQSI+LL+++ SF C+EGI+A +E + + SLMLVTAL IGY+ A+ I
Sbjct: 360 IAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHIGYEKAAEI 419
Query: 425 AKKAHHNSTTLKEEAIASGLISATEYDLIVK 455
AK+A TL+E A+ GL++ E D I+
Sbjct: 420 AKEALKEGRTLREAALELGLLTEEELDEILD 450
>gnl|CDD|30463 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 753 bits (1945), Expect = 0.0
Identities = 295/462 (63%), Positives = 361/462 (78%)
Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61
R E D+ G ++V D WGAQ QRSLENF IG EK P IIRALG++K+AAA+VN +
Sbjct: 1 MTYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGGEKMPREIIRALGLLKKAAAQVNAD 60
Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121
LG LDP+ +AI+ A++EV+ GK DDHFPL VWQTGSGTQSNMNVNEVI+NRA E+LGG
Sbjct: 61 LGLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGE 120
Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
+GSK PVHPNDHVN+ QSSNDT+PTA+HIA +V+RL+P L++L L K +F D+
Sbjct: 121 LGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADV 180
Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
+KIGRTH QDATPLTLGQEFSGYA Q++++++RIE +L LYELA GGTAVGTGLN
Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHPE 240
Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301
F EKVA+ + ++TGLPF+TAPNKFEALA HDA+ GA+ T A +L KIANDIR+LGSG
Sbjct: 241 FGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSG 300
Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361
PR GLGE+ LPENEPGSSIMPGKVNPTQCEA+T V A + GN AAI FA SQG+FELNV+
Sbjct: 301 PRCGLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVF 360
Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421
KP+IAYN LQS++LL+D++ SF +CI GI+ +E I+ L RSLMLVTAL IGYD A
Sbjct: 361 KPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLVTALNPHIGYDKA 420
Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
+ IAKKAH TTL+E A+ GL+S E+D +V PEKM+ P
Sbjct: 421 AKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462
>gnl|CDD|36531 KOG1317, KOG1317, KOG1317, Fumarase [Energy production and
conversion].
Length = 487
Score = 683 bits (1764), Expect = 0.0
Identities = 311/463 (67%), Positives = 366/463 (79%), Gaps = 4/463 (0%)
Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARVN 59
++ R E+D+FG ++V D+Y+GAQ QRSL+NFKIG E+ P II+A GI+K+AAA VN
Sbjct: 26 SSFRTERDTFGEIEVPADKYYGAQTQRSLQNFKIGGERERMPEPIIQAFGILKKAAAEVN 85
Query: 60 IELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILG 119
E G LDPKI +AI +A++EV +GKL+DHFPLVVWQTGSGTQSNMN NEVISNRAIEILG
Sbjct: 86 QEYG-LDPKISKAISQAADEVASGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEILG 144
Query: 120 GVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQ 179
G +GSK VHPNDHVN QSSNDT+PTA+HIA A I RL+P L NL AL K +F+
Sbjct: 145 GKLGSKK-VHPNDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFK 203
Query: 180 DIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTP 239
DIIKIGRTHTQDA PLTLGQEFSGY QV N ++R+ TL LY+LAQGGTAVGTGLNT
Sbjct: 204 DIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAVGTGLNTR 263
Query: 240 VGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLG 299
GFAEK+A + ++TGLPF+TAPNKFEALA HDA+ GA+NT A +L KIANDIRFLG
Sbjct: 264 KGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLG 323
Query: 300 SGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELN 359
SGPR GLGELMLPENEPGSSIMPGKVNPTQCEA+T VCA + GNH A+T S GHFELN
Sbjct: 324 SGPRCGLGELMLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGGSNGHFELN 383
Query: 360 VYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYD 419
V+KP+IA NVL SI+LL+D+ SFT NC+ GI+A KE I LN SLMLVTAL IGYD
Sbjct: 384 VFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAKLLNESLMLVTALNPHIGYD 443
Query: 420 NASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462
NA+ IAK AH N TTLKEEA+ G+++ ++D V PEKM+ P
Sbjct: 444 NAAKIAKTAHKNGTTLKEEALKLGVLTEEQFDEWVVPEKMLGP 486
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 543 bits (1402), Expect = e-155
Identities = 211/449 (46%), Positives = 281/449 (62%), Gaps = 1/449 (0%)
Query: 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGK 64
R E D G +V D Y+G Q R+LENF I K +IRAL ++K+AAA N ELG
Sbjct: 1 RIEHDLLGEREVPADAYYGIQTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGL 60
Query: 65 LDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGS 124
LD + EAIVKA +E+I GKL D F + V Q G+GT +NMN NEVI+NRA+E+LG G
Sbjct: 61 LDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGE 120
Query: 125 KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKI 184
VHPNDHVN+ QS+ND YPTA+ +A + +LL L L A K +F D++K+
Sbjct: 121 YQYVHPNDHVNMSQSTNDVYPTALRLALILLL-RKLLDALAALQEAFQAKAREFADVLKM 179
Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244
GRT QDA P+TLGQEF YAT +K RI + L E+ GGTA+GTG+N P G+ E
Sbjct: 180 GRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGYIE 239
Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304
V + + +ITGLP A N +A DA GA+ A L KIAND+R L SGPR+
Sbjct: 240 LVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRA 299
Query: 305 GLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM 364
GLGE+ LP +PGSSIMPGKVNP E + QV + GN IT A G ELNV++P+
Sbjct: 300 GLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPV 359
Query: 365 IAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMI 424
IAYN+L+SI +L++++ + CI+GI A +E + + S+ +VTAL IGY+ A+ I
Sbjct: 360 IAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIGYEAAAEI 419
Query: 425 AKKAHHNSTTLKEEAIASGLISATEYDLI 453
AK+A +++E + GL++ E D I
Sbjct: 420 AKEALETGRSVRELVLEEGLLTEEELDEI 448
>gnl|CDD|31230 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 487 bits (1255), Expect = e-138
Identities = 203/465 (43%), Positives = 287/465 (61%), Gaps = 3/465 (0%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARV 58
T+ R E+D G ++ + Y+G R++ENF I K IRA+ ++K+AAA
Sbjct: 1 STDMRIERDLLGEREIPAEVYYGIHTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALA 60
Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118
N ELG L +I +AIVKA +E+++GK D F + V+Q G+GT +NMN NEVI+NRA+E+L
Sbjct: 61 NKELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELL 120
Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178
G G +HPNDHVN+ QS+ND YPTA IA + + +L+ L +L A +K +F
Sbjct: 121 GHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLR-KLIDALEDLIEAFERKAKEF 179
Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238
DI+K+GRT QDA P+TLGQEF +A +K IKRI + L E+ GGTA+GTG+N
Sbjct: 180 ADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINA 239
Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298
P G+ E V + + ++TGLP + A N EA A GA+ A L KI ND+R L
Sbjct: 240 PKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLL 299
Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358
SGPR+GL E+ LP + GSSIMPGKVNP E + QVC + GN IT A G +L
Sbjct: 300 SSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQL 359
Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418
NV +P+IAY + +SI +L+++ + CI+GI A +E + + S+ +VTAL IGY
Sbjct: 360 NVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYIGY 419
Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
+NA++IAK+A +++E + GL++ E D I+ PE M P
Sbjct: 420 ENAAIIAKEALETGKSVREVVLERGLLTEEELDDILSPENMTKPG 464
>gnl|CDD|143963 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 369 bits (949), Expect = e-102
Identities = 156/333 (46%), Positives = 191/333 (57%), Gaps = 23/333 (6%)
Query: 12 GTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGE 71
G V D G RS NF++ EE I+ L +K+AAA+ N+ L +
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEED-----IKGLAALKKAAAKANVLL----KEEAA 51
Query: 72 AIVKASEEVI-NGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHP 130
AI+KA +EV GK DD F L V Q GSGT NMN+NEVI E+LG VHP
Sbjct: 52 AIIKALDEVAEEGKADDAFVLKVIQEGSGTAVNMNLNEVIG----ELLG------QLVHP 101
Query: 131 NDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQ 190
ND V+ QSSND PTA+ +A + LLP L L AL +K +F D++K GRTH Q
Sbjct: 102 NDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQ 161
Query: 191 DATPLTLGQEFSGYATQVKNSIKRIEMTLDG-LYELAQGGTAVGTGLNTPVGFAEKVAQN 249
DATP+TLGQE SGYA + ++R++ L L E GGTAVGTGLN FAE +A+
Sbjct: 162 DATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKE 221
Query: 250 IRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGEL 309
+ TGLP APN FEA + DA+ GA+ AT L K AND+R L SGP G EL
Sbjct: 222 LGFFTGLPVP-APNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FGFVEL 279
Query: 310 MLPENEPGSSIMPGKVNPTQCEAITQVCAHIFG 342
L E EPGSSIMPGKVNP Q E + +FG
Sbjct: 280 SLAEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 348 bits (895), Expect = 2e-96
Identities = 127/350 (36%), Positives = 179/350 (51%), Gaps = 27/350 (7%)
Query: 45 IRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNM 104
IRA +++A A+ ELG L + EAI+ A +E++ G D Q GSGT M
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQV----EQEGSGTHDVM 56
Query: 105 NVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTL 164
V EV++ RA E+ GG +V+ +SSND TA + LLP L
Sbjct: 57 AVEEVLAERAGELNGG------------YVHTGRSSNDIVDTA-LRLALRDALDILLPAL 103
Query: 165 RNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
+ L AL K + +D + GRTH QDA P TLG E + +A +++ ++R+E L L
Sbjct: 104 KALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNV 163
Query: 225 LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTS 284
L GG AVGTG N P E+VA+ + G F APN +A++ D + A+
Sbjct: 164 LPLGGGAVGTGANAPPIDRERVAELL----GF-FGPAPNSTQAVSDRDFLVELLSALALL 218
Query: 285 ATALFKIANDIRFLGSGPRSGLGELMLPEN-EPGSSIMPGKVNPTQCEAITQVCAHIFGN 343
A +L KIAND+R L SG GE+ LP+ +PGSSIMP KVNP E + + + GN
Sbjct: 219 AVSLSKIANDLRLLSSG---EFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGN 275
Query: 344 HAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQA 393
AA+ A G E NV P+ + S LL ++ T +EG++
Sbjct: 276 LAALLEALKGGPLEDNVDSPVEREALPDSFDLLDAALRLLT-GVLEGLEV 324
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 185 bits (473), Expect = 2e-47
Identities = 81/281 (28%), Positives = 114/281 (40%), Gaps = 63/281 (22%)
Query: 104 MNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPT 163
V EV++ RA E+ GG+ H + V+ +SSND TA+ +A + + LLP
Sbjct: 14 ALVEEVLAGRAGELAGGL-------HGSALVHKGRSSNDIGTTALRLALRDAL-DDLLPL 65
Query: 164 LRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLY 223
L+ L AL K + + GRTH QDA P+TLG E +A + ++R+E
Sbjct: 66 LKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLE------- 118
Query: 224 ELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINT 283
A A A+
Sbjct: 119 ---------------------------------------------EAAVAEAL--DALAL 131
Query: 284 SATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGN 343
+A L KIA D+R L SG LGE LP +PGSSIMP KVNP E + + + GN
Sbjct: 132 AAAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAELVRGLAGLVIGN 190
Query: 344 HAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFT 384
A+ A G N P + + S+ LL D++
Sbjct: 191 LVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLLL 231
>gnl|CDD|30365 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 104 bits (260), Expect = 7e-23
Identities = 84/356 (23%), Positives = 151/356 (42%), Gaps = 27/356 (7%)
Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181
+ K +++V+ +S D TA + + +LP L+ L AL + + +D
Sbjct: 80 LAEKVGEEASEYVHFGATSQDIIDTA-LALQLKEALDLILPDLKRLIEALAELALEHKDT 138
Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241
+GRTH Q A P T G++F+ + ++ ++R+E + + GG AVGT
Sbjct: 139 PMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGG-AVGTLAALG-D 196
Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301
+V + + + GL + D IA A+ A +L K A DIR L
Sbjct: 197 LGAEVEERVAEKLGLKPAPISTQVSP---RDRIAEFFSALALLAGSLEKFARDIRLLQ-- 251
Query: 302 PRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELN 359
R+ +GE+ P + + GSS MP K NP E +T + + + H E +
Sbjct: 252 -RTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLENLVLWH-ERD 309
Query: 360 VYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV------TALT 413
+ + +L + +D + +N +EG++ E ++ +L+ +L L+ AL
Sbjct: 310 LTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALR 369
Query: 414 SK-IGYDNASMI----AKKAHHNSTTLKEEAIA----SGLISATEYDLIVKPEKMI 460
K +G + A + A KA E +A + +S E ++ P +
Sbjct: 370 KKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLELLDPANYL 425
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 98.0 bits (245), Expect = 5e-21
Identities = 85/294 (28%), Positives = 125/294 (42%), Gaps = 46/294 (15%)
Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
+LP L L AL K + +D +GRTH Q A P T G++F+ +A ++ ++R+E
Sbjct: 108 ILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLE--- 164
Query: 220 DGLYELAQGGT--AVGTGLN---TPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAI 274
+ + GG AVGT + E+VA+ + GL + E D I
Sbjct: 165 EARERVLVGGISGAVGTHASLGPKGPEVEERVAEKL----GLKVPPITTQIEP---RDRI 217
Query: 275 AFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEA 332
A A+ A L KIA DIR L R+ +GE+ P + + GSS MP K NP E
Sbjct: 218 AELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEKGQVGSSTMPHKRNPIDSEN 274
Query: 333 ITQVCAHIFGNHAAITFAN---------SQGHFELNVYKPMIAYNVLQSIQLLSDSIDSF 383
I A + AA N S E N+L LL D+ S
Sbjct: 275 IE-GLARLVRALAAPALENLVQWHERDLSDSSVE---------RNILPDAFLLLDAALSR 324
Query: 384 TINCIEGIQARKENIQ--LSLNRSLML----VTALTSK-IGYDNASMIAKKAHH 430
+EG+ E ++ L L L+L + AL K +G A + K+ ++
Sbjct: 325 LQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKEENY 378
>gnl|CDD|30514 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 87.2 bits (216), Expect = 8e-18
Identities = 98/449 (21%), Positives = 160/449 (35%), Gaps = 66/449 (14%)
Query: 12 GTMKVQEDRYWGAQAQRSLE-NFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIG 70
+ K+ R+ G E N I +K+ + A A++ + G + +
Sbjct: 1 MSNKLWGGRFSGGPDPLVKEFNASISFDKR---LAEYDIAGSIAHAKMLAKQGIITEEEA 57
Query: 71 EAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHP 130
I++ EE++ F L + +V+ I R IE +G V G
Sbjct: 58 AKILEGLEELLEEIRAGKFELDP--------DDEDVHTAIEARLIERIGDVGGK------ 103
Query: 131 NDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQ 190
++ +S ND T + + +++ LL +R L AL + + + G TH Q
Sbjct: 104 ---LHTGRSRNDQVATDLRLWLRDKL-LELLELIRILQKALLDLAEEHAETVMPGYTHLQ 159
Query: 191 DATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNI 250
A P+T YA + I+R+ L + G G P+ E+ A+ +
Sbjct: 160 RAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPL-GAGALAGTPFPIDR-ERTAELL 217
Query: 251 RDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELM 310
G +T N +A++ D I A L ++A D+ S P G EL
Sbjct: 218 ----GFDAVTR-NSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSS-PEFGFIELP 271
Query: 311 LPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM-IAYN- 368
E GSSIMP K NP E I + G + L + K + +AYN
Sbjct: 272 -DEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGL----------LTIMKGLPLAYNR 320
Query: 369 --------VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
+ S+ L DS+ + G+ KE ++ + T L
Sbjct: 321 DLQEDKEPLFDSVDTLEDSLRVLAG-MVSGLTVNKERMREAAEAGFSTATDL-------- 371
Query: 421 ASMIAKK------AHHNSTTLKEEAIASG 443
A + +K AH A G
Sbjct: 372 ADYLVRKGVPFREAHEIVGEAVRRAEERG 400
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 77.6 bits (192), Expect = 8e-15
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
+L L+ L L KK + +D + +GRTH A P T G +F+ + + K ++R++
Sbjct: 110 ILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYAEFKRHLERLKEAR 169
Query: 220 DGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHG 279
+ + + + AVGT N E+VA+ GL + + D A
Sbjct: 170 ERI-LVGKISGAVGTYANLGPEVEERVAE----KLGLKPEPISTQ---VIQRDRHAEYLS 221
Query: 280 AINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAIT 334
+ A+ L KIA +IR L R+ + E+ P + + GSS MP K NP E I
Sbjct: 222 TLALIASTLEKIATEIRHL---QRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENIC 275
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 67.3 bits (165), Expect = 9e-12
Identities = 78/339 (23%), Positives = 125/339 (36%), Gaps = 70/339 (20%)
Query: 157 VHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIE 216
+ L L L AL + + +D +GRTH Q A P+T G + + + +++ +R
Sbjct: 115 LDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRER-- 172
Query: 217 MTLDGLYE---LAQGGTAVGT-------GLNTPVGFAEKVAQNIRDITGLPFITAPNKFE 266
LD L + Q G A GT GL A ++ GL P
Sbjct: 173 --LDELRPRVLVVQFGGAAGTLASLGDQGLAVQEALAAEL--------GL---GVPA--- 216
Query: 267 ALACH---DAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIM 321
+ H D IA + L KIA D+ L ++ +GE+ P + GSS M
Sbjct: 217 -IPWHTARDRIAELASFLALLTGTLGKIARDVYLLM---QTEIGEVAEPFAKGRGGSSTM 272
Query: 322 PGKVNPTQCEAITQVCAHIFGNHAAITF---------ANSQGHFELNVYKPMIAYNVLQS 372
P K NP CE I A AA+ H E + +
Sbjct: 273 PHKRNPVGCELI-VALARRVPGLAALLLDAMVQEHERDAGAWHAEWIA--------LPEI 323
Query: 373 IQLLSDSIDSFTINCIEGIQARKENIQ--LSLNRSLML----VTALTSKIGYDNA----S 422
L S +++ + G++ ++ ++ L L L+L + AL K+G A
Sbjct: 324 FLLASGALEQ-AEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLGRQEAHDLVY 382
Query: 423 MIAKKAHHNSTTLKE----EAIASGLISATEYDLIVKPE 457
+A L+E + + +S E D ++ P
Sbjct: 383 EACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPA 421
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 57.6 bits (140), Expect = 8e-09
Identities = 95/441 (21%), Positives = 139/441 (31%), Gaps = 133/441 (30%)
Query: 49 GIIKQAAARVNIELGKLDPKIGEAIVKASEEVINGKL-------DDHFPLVVWQTGSGTQ 101
GI+ + A KI + K E+ G D H
Sbjct: 27 GILTEEEAA----------KILAGLAKIRAEIEAGAFELDPEDEDIHM------------ 64
Query: 102 SNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLL 161
I R IE +G V G K +H +S ND T + + + ++ LL
Sbjct: 65 -------AIERRLIERIGDV-GGK--LH------TGRSRNDQVATDLRLYLRDALLE-LL 107
Query: 162 PTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDG 221
L +L AL + + D I G TH Q A P+T G YA ++ ++R+
Sbjct: 108 ELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLADAYKR 167
Query: 222 LYELAQGGTA-VGTGLNTPV---------GFAEKV-----AQNIRDITGLPFITAPNKFE 266
+ G A GT P+ GF A + RD F+ E
Sbjct: 168 VNVSPLGAGALAGTTF--PIDRERTAELLGFDGPTENSLDAVSDRD-----FVL-----E 215
Query: 267 ALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEP-----GSSIM 321
L+ A L ++A D+ + G EL P GSSIM
Sbjct: 216 FLS----------AAALLMVHLSRLAEDLILWSTQEF-GFVEL------PDAYSTGSSIM 258
Query: 322 PGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYK--PMIAYN---------VL 370
P K NP E I + G A + L K P+ AYN +
Sbjct: 259 PQKKNPDVLELIRGKAGRVIGALAGL----------LTTLKGLPL-AYNKDLQEDKEPLF 307
Query: 371 QSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMIAKK--- 427
++ L S+ T I + E ++ + T L A + ++
Sbjct: 308 DAVDTLIASLRLLT-GVISTLTVNPERMREAAEAGFSTATDL--------ADYLVREKGV 358
Query: 428 ----AHHNSTTLKEEAIASGL 444
AHH A G
Sbjct: 359 PFREAHHIVGRAVRLAEEKGK 379
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 56.9 bits (138), Expect = 1e-08
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 57/215 (26%)
Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
+LP L+ + +L K ++ D+ + RTH Q ATP TLG+E + + +++ K+++
Sbjct: 121 ILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQYKQLKQIE 180
Query: 220 DGLYELAQGGTAVGTGLNTPVGFAEKVA----------QNIRDITGLPFITAPNKFEALA 269
L + AVG N A VA + GL + + E
Sbjct: 181 I----LGKFNGAVGN-FN-----AHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIE--- 227
Query: 270 CHDAIAFCHGAINTSATALFKIANDI------RFLGSGPRSGLGELMLPENEPGSSIMPG 323
HD IA A+ T L + DI + + G E GSS MP
Sbjct: 228 PHDYIAELFDALARINTILIDLCRDIWGYISLGYFKQKVKKG---------EVGSSTMPH 278
Query: 324 KVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358
KVNP I F N++G+ L
Sbjct: 279 KVNP-------------------IDFENAEGNLGL 294
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 53.9 bits (130), Expect = 9e-08
Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 40/267 (14%)
Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
+LP L + L + +++D+ +G TH Q A T+G+ + + ++ +E
Sbjct: 115 ILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLR 174
Query: 220 DGL-YELAQGGTAVGTG---LNTPVGFAEKVAQ------------NIRDITGLPFITAPN 263
D L + +G GT L+ G +KV + +TG T
Sbjct: 175 DDLRFRGVKG--TTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQ---TYSR 229
Query: 264 KFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIM 321
K + + ++ +A KIA DIR L + L E+ P + + GSS M
Sbjct: 230 KVDID-----VLNALSSLGATAH---KIATDIRLL-----ANLKEVEEPFEKGQIGSSAM 276
Query: 322 PGKVNPTQCEAITQVCAHIFG--NHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDS 379
P K NP + E + H+ ++AA T + Q FE + + L +D+
Sbjct: 277 PYKRNPMRSERCCSLARHLMNLASNAAQTAST-QW-FERTLDDSANRRIAIPEAFLAADA 334
Query: 380 IDSFTINCIEGIQARKENIQLSLNRSL 406
I N EG+ + I+ + + L
Sbjct: 335 ILITLQNISEGLVVYPKVIERHIRQEL 361
>gnl|CDD|36530 KOG1316, KOG1316, KOG1316, Argininosuccinate lyase [Amino acid
transport and metabolism].
Length = 464
Score = 53.8 bits (129), Expect = 9e-08
Identities = 73/354 (20%), Positives = 131/354 (37%), Gaps = 45/354 (12%)
Query: 102 SNMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLL 161
++ +V+ R E++G + G ++ +S ND T + + + +L
Sbjct: 84 NDEDVHTANERRLTELIGEIAGK---------LHTGRSRNDQVVTDLRLWL-RDAIDTIL 133
Query: 162 PTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDG 221
L NL L + D++ G TH Q A P+ +A Q+ + R+
Sbjct: 134 GLLWNLIRVLVDRAEAELDVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKR 193
Query: 222 LYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIA-FCHGA 280
L +L G A+ P+G + G + N +A++ D + F A
Sbjct: 194 LNQLPLGAGALA---GNPLGIDREFLAEELGFEG---VIM-NSMDAVSDRDFVVEFLFWA 246
Query: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPEN-EPGSSIMPGKVNPTQCEAITQVCAH 339
T L ++A D+ + G + L + GSS+MP K NP E +
Sbjct: 247 SMVM-THLSRLAEDLIIYST---KEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGR 302
Query: 340 IFGNHAAITFANSQGHFELNVYKPMIAYN---------VLQSIQLLSDSIDSFTINCIEG 390
+FG+ + + + YN + S + +SDS+ T I
Sbjct: 303 VFGDLTGLL---------MTLKGLPSTYNKDLQEDKEPLFDSSKTVSDSLQVAT-GVIST 352
Query: 391 IQARKENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGL 444
+ +EN++ +L ML T L + + ++ HH S A G+
Sbjct: 353 LTVNQENMEKALTPD-MLATDLAYYL--VRKGVPFRQTHHISGKAVRMAEERGV 403
>gnl|CDD|37911 KOG2700, KOG2700, KOG2700, Adenylosuccinate lyase [Nucleotide
transport and metabolism].
Length = 481
Score = 47.3 bits (112), Expect = 9e-06
Identities = 64/310 (20%), Positives = 111/310 (35%), Gaps = 12/310 (3%)
Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219
+LP L + L++ +++ +GRTH Q A T G+ + ++ ++R
Sbjct: 128 ILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRAR 187
Query: 220 DGLYELAQGGTAVGTGLNTPVGFA---EKVAQNIRDIT-GLPFITAPNKFEALACHDAIA 275
+ G A GT + F +KV + +T L F+ A
Sbjct: 188 TDVRFRGLKG-ATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVTGQTYSRKTDA 246
Query: 276 FCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPTQCEAI 333
+ + K A DIR L E+ P ++ GSS MP K NP +CE I
Sbjct: 247 EEVAPLASLGATAHKYATDIRLLAK-----FAEVEEPFEAHQIGSSAMPYKRNPMRCERI 301
Query: 334 TQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQA 393
T + H+ S E + VL L +D +N +EG+
Sbjct: 302 TSLARHLRPYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVV 361
Query: 394 RKENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLI 453
+ I+ ++ L + + A + ++AH L +A + DLI
Sbjct: 362 YPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVKQEGGDNDLI 421
Query: 454 VKPEKMIYPH 463
+ ++
Sbjct: 422 ERAKEDPTFK 431
>gnl|CDD|35416 KOG0195, KOG0195, KOG0195, Integrin-linked kinase [Signal
transduction mechanisms].
Length = 448
Score = 32.3 bits (73), Expect = 0.31
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 335 QVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSID--SFTINCIEGIQ 392
Q+ + AA+ N +G L+ KPM+ +L+ + S + F +G +
Sbjct: 114 QIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRIPFKDTTWKGTK 173
Query: 393 ARKENIQLS 401
R + LS
Sbjct: 174 TRTRDATLS 182
>gnl|CDD|34250 COG4631, XdhB, Xanthine dehydrogenase, molybdopterin-binding
subunit B [Nucleotide transport and metabolism].
Length = 781
Score = 31.5 bits (71), Expect = 0.59
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 25/99 (25%)
Query: 193 TPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRD 252
TP+ G F+ AT + + + DG L GGT +G GL T KVAQ + +
Sbjct: 449 TPVKFGISFT--ATHYNQAGALVHVYTDGSIHLNHGGTEMGQGLYT------KVAQVVAE 500
Query: 253 ITGLPF----ITAPNKFEALACHDAIAFCHGAINTSATA 287
+ ITA D + NTSATA
Sbjct: 501 EFQVDIDRVKITATTT-------DKVP------NTSATA 526
>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This
group shares the zinc coordination sites of the
zinc-dependent alcohol dehydrogenases. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 306
Score = 30.7 bits (70), Expect = 0.85
Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 25/141 (17%)
Query: 180 DIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRI------------------EMTLDG 221
D+ + TP+ LG EFSG +V ++ G
Sbjct: 42 DLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRG 101
Query: 222 LYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAI 281
Y L +GT + GFAE V + LP EA A + +A A+
Sbjct: 102 DYNLCPHRKGIGTQADG--GFAEYVLVPEESLHELP---ENLSLEAAALTEPLAVAVHAV 156
Query: 282 NTSATALFKIANDIRFLGSGP 302
+ + + + G GP
Sbjct: 157 A--ERSGIRPGDTVVVFGPGP 175
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 29.9 bits (68), Expect = 1.6
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 176 SDFQDIIKIGRTHTQDATPLTLGQEFSGYATQV 208
SD + G H PL LG EFSG +V
Sbjct: 39 SDIPRYLGTGAYHP----PLVLGHEFSGTVEEV 67
>gnl|CDD|133249 cd00066, G-alpha, G protein alpha subunit. The alpha subunit of G
proteins contains the guanine nucleotide binding site.
The heterotrimeric GNP-binding proteins are signal
transducers that communicate signals from many hormones,
neurotransmitters, chemokines, and autocrine and
paracrine factors. Extracellular signals are received by
receptors, which activate the G proteins, which in turn
route the signals to several distinct intracellular
signaling pathways. The alpha subunit of G proteins is a
weak GTPase. In the resting state, heterotrimeric G
proteins are associated at the cytosolic face of the
plasma membrane and the alpha subunit binds to GDP. Upon
activation by a receptor GDP is replaced with GTP, and
the G-alpha/GTP complex dissociates from the beta and
gamma subunits. This results in activation of downstream
signaling pathways, such as cAMP synthesis by adenylyl
cyclase, which is terminated when GTP is hydrolized and
the heterotrimers reconstitute.
Length = 317
Score = 29.0 bits (66), Expect = 2.6
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416
EL Y+P+I N+LQS++ L ++++ I + + K+ ++ + L ++
Sbjct: 32 ELREYRPVIYSNILQSMKALLEAMERLNIPFGD-PENEKDAKKILSFAPELEEGELPPEL 90
Query: 417 G 417
Sbjct: 91 A 91
>gnl|CDD|39637 KOG4436, KOG4436, KOG4436, Predicted GTPase activator NB4S/EVI5
(contains TBC domain)/Calmodulin-binding protein Pollux
(contains PTB and TBC domains) [General function
prediction only].
Length = 948
Score = 28.9 bits (64), Expect = 2.9
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 10/115 (8%)
Query: 48 LGIIKQAAARVNIEL-GKLDPKIGEAIVKASE----EVINGKLDDHFPLVVWQTGSGTQS 102
+ + A + + K + E K S E++ G + HF L+ WQ S
Sbjct: 143 MWTLWGAFSAAASQQHAKYAMDLWERCRKKSLHKLKELVEGGIPMHFRLIRWQLLSSATD 202
Query: 103 NMNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIV 157
I ++ + +H + + TYP V
Sbjct: 203 REQAL--IFEDYSDLAPCSSQQEKELHIG---IIRRDIERTYPEHYFFKEQSSTV 252
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 28.7 bits (65), Expect = 3.5
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 20/77 (25%)
Query: 189 TQDATPLTLGQEFSGYATQVKNSIKR--------IEMTL---------DGLYELAQGGTA 231
T + P+TLG EFSG +V + + +E T+ GLY L
Sbjct: 60 TGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF 119
Query: 232 VGTGLNTPVG-FAEKVA 247
GL G FAE V
Sbjct: 120 --IGLGGGGGGFAEYVV 134
>gnl|CDD|35305 KOG0082, KOG0082, KOG0082, G-protein alpha subunit (small G protein
superfamily) [Cell cycle control, cell division,
chromosome partitioning, Signal transduction
mechanisms].
Length = 354
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKI 416
EL Y+P+I N++QS++ L ++++ IN + + L + + + ++
Sbjct: 65 ELLEYRPVIYSNIIQSLKALLRAMETLGINLDDPERENDAQKLTLLADAAEELGVFSPEL 124
Query: 417 G 417
Sbjct: 125 A 125
>gnl|CDD|33969 COG4246, COG4246, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 340
Score = 28.4 bits (63), Expect = 4.0
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298
PV AE V +R IT P T F L F G + TSAT LF + IRFL
Sbjct: 29 PVAAAEPVPVKVRTITPFPVGTTTTLFGGLE------FVGGLVMTSATTLFGALSAIRFL 82
Query: 299 GSG 301
G
Sbjct: 83 PDG 85
>gnl|CDD|37355 KOG2144, KOG2144, KOG2144, Tyrosyl-tRNA synthetase, cytoplasmic
[Translation, ribosomal structure and biogenesis].
Length = 360
Score = 28.0 bits (62), Expect = 4.9
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 22 WGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASEEVI 81
A L+N K +E + IK A +N+ L KL K +
Sbjct: 71 LFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPLEKL---------KFVKG-S 120
Query: 82 NGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPVHP 130
N +L ++ L +++ S NV + + +A G K +P
Sbjct: 121 NYQLSKYYTLDMYRLSS------NVTQHDAKKA-----GAEVVKQVENP 158
>gnl|CDD|144191 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase.
Length = 350
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 357 ELNVYKPMIAYNVLQSIQLLSDSIDSFTIN 386
E ++P+I N+LQS+++L D++++ I
Sbjct: 60 EKLEFRPVIYQNILQSMRVLVDAMETLGIP 89
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,203,016
Number of extensions: 268574
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 35
Length of query: 463
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 366
Effective length of database: 4,167,664
Effective search space: 1525365024
Effective search space used: 1525365024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)