RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] (463 letters) >gnl|CDD|179045 PRK00485, fumC, fumarate hydratase; Reviewed. Length = 464 Score = 891 bits (2306), Expect = 0.0 Identities = 301/463 (65%), Positives = 357/463 (77%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60 M TR E+DS G ++V D WGAQ QRSLENF IG E+ P +IRAL ++K+AAARVN Sbjct: 1 MMETRIEKDSMGEVEVPADALWGAQTQRSLENFPIGGERMPRELIRALALLKKAAARVNA 60 Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120 ELG LD + +AIV A++EVI GK DDHFPL VWQTGSGTQSNMNVNEVI+NRA E+LGG Sbjct: 61 ELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGG 120 Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180 +GSK PVHPNDHVN+ QSSNDT+PTA+HIA IV RLLP L +L L K +F D Sbjct: 121 ELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFAD 180 Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240 I+KIGRTH QDATPLTLGQEFSGYA Q+++ I+RIE L LYELA GGTAVGTGLN Sbjct: 181 IVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHP 240 Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300 GFAE+VA+ + ++TGLPF+TAPNKFEALA HDA+ GA+ T A +L KIANDIR+L S Sbjct: 241 GFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLAS 300 Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 GPR GLGE+ LPENEPGSSIMPGKVNPTQCEA+T VCA + GN AA+TFA SQG+FELNV Sbjct: 301 GPRCGLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNV 360 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420 +KP+IAYN LQSI+LL+D++ SF +C+ GI+ +E I+ L RSLMLVTAL IGYD Sbjct: 361 FKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDK 420 Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 A+ IAKKAH TLKE A+ G ++ E+D V PEKM P Sbjct: 421 AAKIAKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGPG 463 >gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs. Length = 458 Score = 747 bits (1930), Expect = 0.0 Identities = 302/456 (66%), Positives = 357/456 (78%) Query: 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGK 64 R E+DS G ++V D+YWGAQ QRSLENFKIG EK PL +I A I+K+AAA VN +LGK Sbjct: 2 RIEKDSMGEIQVPADKYWGAQTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGK 61 Query: 65 LDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGS 124 LD K +AIV+A++E++ GKLDDHFPLVVWQTGSGTQSNMNVNEVI+NRAIE+LGG +GS Sbjct: 62 LDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGS 121 Query: 125 KSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKI 184 K PVHPNDHVN QSSNDT+PTA+HIA I ++L+P L NL L K +F I+KI Sbjct: 122 KQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKI 181 Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244 GRTH QDATPLTLGQEFSGY Q+++ ++RI +L LYELA GGTAVGTGLNT GF E Sbjct: 182 GRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPGFDE 241 Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304 KVA+ I TGLPF+TAPNKFEALA HDAI HGA+ T A +L KIANDIR+LGSGPR Sbjct: 242 KVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRC 301 Query: 305 GLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM 364 GLGEL +PENEPGSSIMPGKVNPTQCEA+T VC + GN A I FA SQG+FELNV+KP+ Sbjct: 302 GLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPV 361 Query: 365 IAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMI 424 I YN LQS++LLSD+++SF +C+ GI+ KE IQ LN SLMLVTAL IGYDNA+ I Sbjct: 362 IIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDNAAKI 421 Query: 425 AKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMI 460 AKKAH TLKE A+ GL+S E+D V PE+M+ Sbjct: 422 AKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMV 457 >gnl|CDD|177743 PLN00134, PLN00134, fumarate hydratase; Provisional. Length = 458 Score = 740 bits (1912), Expect = 0.0 Identities = 300/454 (66%), Positives = 355/454 (78%), Gaps = 2/454 (0%) Query: 11 FGTMKVQEDRYWGAQAQRSLENFKIG--EEKQPLVIIRALGIIKQAAARVNIELGKLDPK 68 G ++V D+ WGAQ QRSL+NF+IG E+ P I+RA GI+K+AAA+VN+E G LDP Sbjct: 1 MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPD 60 Query: 69 IGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSPV 128 IG+AI++A++EV GKLDDHFPLVVWQTGSGTQ+NMN NEVI+NRA EILGG +G KSPV Sbjct: 61 IGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPV 120 Query: 129 HPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTH 188 HPNDHVN QSSNDT+PTA+HIA A I RL+P L+ LH +L K +F+DI+KIGRTH Sbjct: 121 HPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTH 180 Query: 189 TQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQ 248 QDA PLTLGQEFSGYATQVK + R++ TL LYELAQGGTAVGTGLNT GF EK+A Sbjct: 181 LQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAA 240 Query: 249 NIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGE 308 + + TGLPF+TAPNKFEALA HDA GA+NT A +L KIANDIR LGSGPR GLGE Sbjct: 241 AVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGE 300 Query: 309 LMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYN 368 L LPENEPGSSIMPGKVNPTQCEA+T VCA + GNH AIT S GHFELNV+KP+IAYN Sbjct: 301 LNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYN 360 Query: 369 VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMIAKKA 428 +L SI+LL D+ SF NC+ GI+A +E I L+ SLMLVTAL KIGYD A+ +AKKA Sbjct: 361 LLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAVAKKA 420 Query: 429 HHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 H TTLKE A+ G+++A E+D +V PEKM P Sbjct: 421 HKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGP 454 >gnl|CDD|183393 PRK12273, aspA, aspartate ammonia-lyase; Provisional. Length = 472 Score = 562 bits (1452), Expect = e-161 Identities = 210/465 (45%), Positives = 283/465 (60%), Gaps = 3/465 (0%) Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARV 58 M NTR E+D G +V D Y+G R++ENF I K +IRAL ++K+AAA Sbjct: 2 MMNTRIEKDLLGEREVPADAYYGIHTLRAVENFPISGVKISDYPELIRALAMVKKAAALA 61 Query: 59 NIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEIL 118 N ELG LD + +AIV A +E++ GKL D F + V Q G+GT +NMN NEVI+NRA+E+L Sbjct: 62 NKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELL 121 Query: 119 GGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDF 178 G G VHPNDHVN+ QS+ND YPTAI IA + +LL L L A K +F Sbjct: 122 GHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSL-RKLLDALEQLQEAFEAKAKEF 180 Query: 179 QDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT 238 DI+K+GRT QDA P+TLGQEF YA + KR+ + L E+ G TA+GTGLN Sbjct: 181 ADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNA 240 Query: 239 PVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFL 298 P G+ E V + + +ITGLP + A + EA A GA+ A L KI ND+R L Sbjct: 241 PPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLL 300 Query: 299 GSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFEL 358 SGPR+GL E+ LP + GSSIMPGKVNP E + QVC + GN +T A G EL Sbjct: 301 SSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLEL 360 Query: 359 NVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGY 418 NV +P+IAYN+ +SI +L+++ + CI+GI A +E + + S+ +VTAL IGY Sbjct: 361 NVMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGY 420 Query: 419 DNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463 +NA+ IAK+A +++E + GL++ E D I+ PE M +P Sbjct: 421 ENAAEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPG 465 >gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional. Length = 464 Score = 561 bits (1448), Expect = e-160 Identities = 251/457 (54%), Positives = 323/457 (70%) Query: 4 TRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELG 63 +R E DS G ++V ED YWGAQ QRSL NF IG+E+ PL ++ AL +IK+AAARVN G Sbjct: 2 SRTETDSLGPIEVPEDAYWGAQTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNG 61 Query: 64 KLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMG 123 L I I +A++EV++G+ DD FPLVVWQTGSGTQSNMNVNEVI+ RA E+ G G Sbjct: 62 DLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRG 121 Query: 124 SKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIK 183 KSPVHPNDHVN QSSND +PTA+HIA A+ + +LLP + L L ++ + ++K Sbjct: 122 GKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVK 181 Query: 184 IGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFA 243 GRTH DATP+T GQE S + Q+ + + I L + ELAQGGTAVGTGLN P GFA Sbjct: 182 TGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHGFA 241 Query: 244 EKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPR 303 E +A + ++GLPF+TAPNKF ALA H+ + GA+ T A AL KIAND+R LGSGPR Sbjct: 242 EAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPR 301 Query: 304 SGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKP 363 +GL E+ LP NEPGSSIMPGKVNPTQCEA++ + + GN A I FA SQGH +LNV+KP Sbjct: 302 AGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKP 361 Query: 364 MIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASM 423 +I +N+LQSI+LL+D +F +C+ G++ E + L R LMLVTAL IGYD A+ Sbjct: 362 VIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAE 421 Query: 424 IAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMI 460 IAKKA+ TTL+E A+A G ++ ++D V+PE M+ Sbjct: 422 IAKKAYAEGTTLREAALALGYLTDEQFDAWVRPENML 458 >gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional. Length = 473 Score = 533 bits (1375), Expect = e-152 Identities = 210/461 (45%), Positives = 292/461 (63%), Gaps = 1/461 (0%) Query: 2 TNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIE 61 N R E D G +V + Y+G Q R++ENF I K +IRA +K+AAA N + Sbjct: 3 KNMRIEHDLLGEKEVPAEAYYGIQTLRAVENFPITGYKIHPELIRAFAQVKKAAALANAD 62 Query: 62 LGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121 LG L +I EAIV+A +E++ GKL D F + Q G+GT +NMN NEVI+NRA+E+LGG Sbjct: 63 LGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGE 122 Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181 G V PNDHVN+ QS+ND +PTAI IA + LL + L +K ++F + Sbjct: 123 KGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLL-EGLLAAMGALQDVFEEKAAEFDHV 181 Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 IK+GRT QDA P+TLGQEFS YA +K KRI+ + LYE+ GGTAVGTGLN Sbjct: 182 IKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNADPE 241 Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301 + E+V +++ ITGLP + A + +A DA GA+ A L KIAND+R L SG Sbjct: 242 YIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSG 301 Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361 PR+GLGE+ LP +PGSSIMPGKVNP E + Q+ + GN IT A G ELNV Sbjct: 302 PRTGLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVM 361 Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421 +P+IA+N+L+SI +L+++ +FT NC++GI+A +E + + +S+ + TAL IGY+ A Sbjct: 362 EPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIGYEAA 421 Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 + IAK+A +++E A+ +GL+S E DLI+ P +M +P Sbjct: 422 ARIAKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHP 462 >gnl|CDD|162062 TIGR00839, aspA, aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model. Length = 468 Score = 430 bits (1108), Expect = e-121 Identities = 182/461 (39%), Positives = 268/461 (58%), Gaps = 4/461 (0%) Query: 5 RNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEK--QPLVIIRALGIIKQAAARVNIEL 62 R E+D G +V D Y+G R+ ENF I K +R + ++K+AAA N EL Sbjct: 1 RIEEDLLGEREVPADAYYGIHTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKEL 60 Query: 63 GKLDPKIGEAIVKASEEVIN-GKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGV 121 G + I AIV A +E++N GK D FP+ V+Q G+GT NMN NEVI+N A+E++G Sbjct: 61 GTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQ 120 Query: 122 MGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDI 181 G ++PNDHVN QS+ND YPT IA ++ +L+ + L +K +F DI Sbjct: 121 KGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLI-KLVDAINQLRDGFEQKAKEFADI 179 Query: 182 IKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVG 241 +K+GRT QDA P+TLGQEF ++ ++ +K I+ T + L E+ G TA+GTGLNTP Sbjct: 180 LKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPE 239 Query: 242 FAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSG 301 ++ V + + ++TGLP + A N EA + A HGA+ A + KI ND+R L SG Sbjct: 240 YSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSG 299 Query: 302 PRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVY 361 PR+GL E+ LPE + GSSIMP KVNP E + QVC + GN +T A G +LNV Sbjct: 300 PRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVM 359 Query: 362 KPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNA 421 +P+I + +SI +L+++ + T C+ GI A KE + + S+ +VT L IG+ N Sbjct: 360 EPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNG 419 Query: 422 SMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 ++ K +++E + GL++ E D I E +++P Sbjct: 420 DIVGKICAETGKSVREVVLEKGLLTEEELDDIFSVENLMHP 460 >gnl|CDD|184723 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional. Length = 479 Score = 390 bits (1003), Expect = e-109 Identities = 186/460 (40%), Positives = 283/460 (61%), Gaps = 1/460 (0%) Query: 3 NTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIEL 62 R E+D G +V Y+G Q R++ENF I K +I+A I+K+AAA N ++ Sbjct: 10 GVRIEKDFLGEKEVPNYAYYGVQTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDV 69 Query: 63 GKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVM 122 G+L+ G AI +A++E+++GK DHF + Q G+GT NMN NEVI+NRA+E+LG Sbjct: 70 GRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEK 129 Query: 123 GSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDII 182 G + PN HVN+ QS+ND +PTAIHIA + LL T+ +H K F +I Sbjct: 130 GDYHYISPNSHVNMAQSTNDAFPTAIHIATLN-ALEGLLQTMGYMHDVFELKAEQFDHVI 188 Query: 183 KIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGF 242 K+GRTH QDA P+ LGQEF Y+ ++ +KRI+ + LYE+ G TAVGTGLN + Sbjct: 189 KMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNADPEY 248 Query: 243 AEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGP 302 E V +++ I+ LP + A + +A DA A+ + KIAND+R + SGP Sbjct: 249 IEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGP 308 Query: 303 RSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYK 362 R GL E+MLP +PGSSIMPGKVNP E I Q+ + GN I A+ G ELNV + Sbjct: 309 RVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVME 368 Query: 363 PMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNAS 422 P++ +N+LQSI ++++ +FT NC++GI+A ++ ++ + +S+ ++TA+ IGY+ A+ Sbjct: 369 PVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAA 428 Query: 423 MIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 +AK+A +++E + +G++S + +LI+ P +M +P Sbjct: 429 RVAKEAIATGQSVRELCVKNGVLSQEDLELILDPFEMTHP 468 >gnl|CDD|162114 TIGR00928, purB, adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP. Length = 435 Score = 89.0 bits (221), Expect = 2e-18 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 14/280 (5%) Query: 133 HVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDA 192 ++ +SND TA+ + + + +LP L+ L L +++D + +GRTH Q A Sbjct: 90 FIHFGATSNDIVDTALALLLRDAL-EIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHA 148 Query: 193 TPLTLGQEFSGYATQVKNSIKRI-EMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIR 251 P TLG++F+ +A ++K ++R+ + G AVGT E V + + Sbjct: 149 EPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISG--AVGTHAAAYPLVEE-VEERVT 205 Query: 252 DITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELML 311 + GL + + E H + + T+ L K A DIR L R+ E+ Sbjct: 206 EFLGLKPVPISTQIEPRDRHAELLDALALLATT---LEKFAVDIRLL---QRTEHFEVEE 259 Query: 312 P--ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYNV 369 P + + GSS MP K NP E + + I + H E ++ + + Sbjct: 260 PFGKGQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALENVPLWH-ERDLTDSSVERII 318 Query: 370 LQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV 409 L +L+D + T+ ++ + ENI +L +L L+ Sbjct: 319 LPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLI 358 >gnl|CDD|150996 pfam10415, FumaraseC_C, Fumarase C C-terminus. Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. Length = 55 Score = 84.8 bits (211), Expect = 4e-17 Identities = 27/55 (49%), Positives = 34/55 (61%) Query: 408 LVTALTSKIGYDNASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYP 462 LVTAL IGYD A+ IAK+A TL+E A+ GL++ E D I+ PE M P Sbjct: 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55 >gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. Length = 455 Score = 72.8 bits (179), Expect = 2e-13 Identities = 90/395 (22%), Positives = 140/395 (35%), Gaps = 69/395 (17%) Query: 68 KIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGGVMGSKSP 127 KI E + + EE G +++ I I+ +G +G K Sbjct: 55 KIIEGLNELKEEGREGPFILDPDD------------EDIHMAIERELIDRVGEDLGGK-- 100 Query: 128 VHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRT 187 +H +S ND T + + + ++ L L +L AL + + + G T Sbjct: 101 LHTG------RSRNDQVATDLRLYLRDHVLE-LAEALLDLQDALIELAEKHVETLMPGYT 153 Query: 188 HTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVA 247 H Q A P+TL YA + +R+ D L + + +G+G GF Sbjct: 154 HLQRAQPITLAHHLLAYAEMLLRDYERL---QDALKRVNV--SPLGSGALAGTGFPIDRE 208 Query: 248 QNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLG 307 + G +T N +A++ D I L + A D+ +G G Sbjct: 209 YLAELL-GFDAVTE-NSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FG 263 Query: 308 ELMLP-ENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYK--PM 364 + LP E GSSIMP K NP E I + GN + L K P+ Sbjct: 264 FVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGM----------LMTLKALPL 313 Query: 365 IAYNV-LQSI-QLLSDSIDSFTINCIE-------GIQARKENIQLSLNRSLMLVTALTSK 415 AYN LQ + L D++ + +E I KE ++ + + T L Sbjct: 314 -AYNRDLQEDKEPLFDALKT-VELSLEMATGMLDTITVNKERMEEAASAGFSNATEL--- 368 Query: 416 IGYDNASMIAKK------AHHNSTTLKEEAIASGL 444 A + +K AHH L AI G Sbjct: 369 -----ADYLVRKGVPFREAHHIVGELVATAIERGK 398 >gnl|CDD|180551 PRK06390, PRK06390, adenylosuccinate lyase; Provisional. Length = 451 Score = 71.5 bits (175), Expect = 4e-13 Identities = 58/208 (27%), Positives = 87/208 (41%), Gaps = 25/208 (12%) Query: 141 NDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQE 200 NDT TA+ I I+ ++NL L K I +++D +GRTH Q A+P+T G + Sbjct: 106 NDT-ATALQIHDFVSIIKD---DIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLK 161 Query: 201 FSGYATQVKNSIKR-IEMTLDGLYELAQGGTAVGTGLNTPVG-------FAEKVAQNIRD 252 F+ Y ++ + R EM G A + PVG A + + + Sbjct: 162 FAVYLDEMSRHLDRLTEM----------GDRAFAGKVLGPVGTGAALGKDALDIQNRVME 211 Query: 253 ITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP 312 I G+ + + D IN + L KIA +IR L + E Sbjct: 212 ILGIYSEIGSTQ---IVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDE 268 Query: 313 ENEPGSSIMPGKVNPTQCEAITQVCAHI 340 E++ GSS MP KVNP E + + I Sbjct: 269 ESQVGSSSMPSKVNPINSENVVSLSRFI 296 >gnl|CDD|181463 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed. Length = 449 Score = 71.5 bits (176), Expect = 4e-13 Identities = 91/357 (25%), Positives = 150/357 (42%), Gaps = 65/357 (18%) Query: 140 SNDTYPTA--IHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTL 197 SND TA + + + I+ L LR + L KK + ++ + IGRTH Q A P T Sbjct: 103 SNDIIDTATALQLKDSLEILEEKLKKLRGV---LLKKAEEHKNTVCIGRTHGQHAVPTTY 159 Query: 198 GQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEK---VAQNIRDIT 254 G F+ +A++++ ++R+E + + Q AVG T F EK + + + +I Sbjct: 160 GMRFAIWASEIQRHLERLEQLKPRV-CVGQMTGAVG----TQAAFGEKGIEIQKRVMEIL 214 Query: 255 GLPFITAPNK----------FEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304 GL + N+ LA N AT L KI +IR L R+ Sbjct: 215 GLKPVLISNQVIQRDRHAEFMMFLA------------NI-ATTLDKIGLEIRNL---QRT 258 Query: 305 GLGELMLP--ENEPGSSIMPGKVNPTQCEAITQVC--AHIFGNHAAITFANSQGHFELNV 360 +GE+ + + GSS MP K NP E Q+C A + ++ N+ E ++ Sbjct: 259 EIGEVEEEFGKKQVGSSTMPHKRNPITSE---QICGLARVVRSNVEPALLNNPLWDERDL 315 Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNR--------SLMLVTAL 412 + +L+D I I +EG++ ENI+ +L ++M+ L Sbjct: 316 TNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMI--EL 373 Query: 413 TSK-IGYDNASMI----AKKAHHNSTTLKEEAI----ASGLISATEYDLIVKPEKMI 460 + +G A + A KAH LKE + ++ E + ++ PE I Sbjct: 374 AKRGMGRQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPETYI 430 >gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional. Length = 614 Score = 65.6 bits (160), Expect = 2e-11 Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 41/320 (12%) Query: 138 QSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTL 197 +S ND T + + C ++ +LL L L + Q + G TH Q A P+T Sbjct: 107 RSRNDQVATDLKLWCRQQ-GQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTF 165 Query: 198 GQEFSGYATQVKNSIKRIEMTLDGLYELAQG-GTAVGTGLNTPVGFAEKVAQNIRDITGL 256 Y + R+E L L G G GT P+ E +A N L Sbjct: 166 AHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAY--PID-REALAHN------L 216 Query: 257 PFITAP-NKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENE 315 F A N ++++ D + + S L ++A D+ F SG SG EL Sbjct: 217 GFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSG-ESGFIELA-DTVT 274 Query: 316 PGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPMIAYN--VLQSI 373 GSS+MP K NP E I ++G A + + V +AYN + + Sbjct: 275 SGSSLMPQKKNPDALELIRGKTGRVYGALAGMM---------MTVKALPLAYNKDMQEDK 325 Query: 374 QLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDNASMIA-------- 425 + L D++D++ +C+E + I+++ R+L +K GY NA+ +A Sbjct: 326 EGLFDALDTWN-DCMEMAALCFDGIKVNGERTLE-----AAKQGYANATELADYLVAKGI 379 Query: 426 --KKAHHNSTTLKEEAIASG 443 ++AHH AIA G Sbjct: 380 PFREAHHIVGVAVVGAIAKG 399 >gnl|CDD|162853 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. Length = 338 Score = 59.0 bits (143), Expect = 2e-09 Identities = 60/203 (29%), Positives = 82/203 (40%), Gaps = 15/203 (7%) Query: 133 HVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDA 192 +V+ +S D T++ + + LL L L AL + +D GRT Q A Sbjct: 92 YVHRGATSQDVIDTSL-MLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQA 150 Query: 193 TPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNT-PVGFAEKVAQNIR 251 P T G + +G+ V + R+ L GG A GT G A VA + Sbjct: 151 VPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAALGTRGGA--VAAALA 207 Query: 252 DITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELML 311 GLP P + D IA A+ A AL KIA DI L ++ +GE+ Sbjct: 208 ARLGLPLPALPWHTQ----RDRIAEFGSALALVAGALGKIAGDIALLS---QTEVGEVF- 259 Query: 312 PENEP-GSSIMPGKVNPTQCEAI 333 E GSS MP K NP + Sbjct: 260 -EAGGGGSSAMPHKRNPVGAALL 281 >gnl|CDD|181757 PRK09285, PRK09285, adenylosuccinate lyase; Provisional. Length = 456 Score = 55.1 bits (134), Expect = 4e-08 Identities = 63/249 (25%), Positives = 92/249 (36%), Gaps = 87/249 (34%) Query: 148 IHIAC-AERI---VHRL----------LPTLRNLHVALTKKISDFQDIIKIGRTHTQDAT 193 IH AC +E I H L LP LR L AL + ++ D+ + RTH Q AT Sbjct: 117 IHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHGQPAT 176 Query: 194 PLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFA---------- 243 P TLG+E + A +++ +K++E + L + AVG + Sbjct: 177 PTTLGKEMANVAYRLERQLKQLE----AVEILGKINGAVGN-------YNAHLAAYPEVD 225 Query: 244 -EKVAQNIRDITGL-----PFITA--PNKFEALACHDAIAFCHGAINTSATALFKIANDI 295 ++ + L P+ T P HD IA A+ T L + D+ Sbjct: 226 WHAFSREF--VESLGLTWNPYTTQIEP--------HDYIAELFDAVARFNTILIDLDRDV 275 Query: 296 ------RFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITF 349 + ++G E GSS MP KVNP I F Sbjct: 276 WGYISLGYFKQKTKAG---------EIGSSTMPHKVNP-------------------IDF 307 Query: 350 ANSQGHFEL 358 NS+G+ L Sbjct: 308 ENSEGNLGL 316 >gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional. Length = 455 Score = 53.5 bits (129), Expect = 1e-07 Identities = 85/331 (25%), Positives = 130/331 (39%), Gaps = 65/331 (19%) Query: 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 S ND T + + C +++ LL LR L AL + + QD + G TH Q A P+T Sbjct: 108 SRNDQVATDLKLWCKDQVAE-LLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFA 166 Query: 199 QEFSGYATQVKNSIKRIEMTLDGLYE--LAQGGTAVGTGLNTPVGFAEKVAQNIRDITGL 256 Y + R++ L L L G A GT E++A L Sbjct: 167 HWCLAYVEMLARDESRLQDALKRLDVSPLGSGALA-GTAYEID---REQLAGW------L 216 Query: 257 PFITAP-NKFEALACHD-AIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPEN 314 F +A N ++++ D + A + S L + A D+ F SG +G EL Sbjct: 217 GFASATRNSLDSVSDRDHVLELLSDA-SISMVHLSRFAEDLIFFNSG-EAGFVELS-DRV 273 Query: 315 EPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNVYKPM-IAYNVLQSI 373 GSS+MP K NP E I C + G + L K + +AYN + + Sbjct: 274 TSGSSLMPQKKNPDALELIRGKCGRVQGALTGM----------LMTLKGLPLAYN--KDM 321 Query: 374 QL----LSDSIDSFTINCI-------EGIQARKENIQLSLNRSLMLVTALTSKIGYDNAS 422 Q L D++D++ C+ +GIQ ++ ++ GY NA+ Sbjct: 322 QEDKEGLFDALDTWLD-CLHMAALVLDGIQVKRPR------------CQEAAQQGYANAT 368 Query: 423 MIA----------KKAHHNSTTLKEEAIASG 443 +A ++AHH EAI G Sbjct: 369 ELADYLVAKGVPFREAHHIVGEAVVEAIRQG 399 >gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional. Length = 887 Score = 47.9 bits (114), Expect = 5e-06 Identities = 53/239 (22%), Positives = 86/239 (35%), Gaps = 34/239 (14%) Query: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229 AL K S D + Q A P +LG + + + + G Sbjct: 545 ALVFKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGA 604 Query: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280 A G G P+ GF + APN +A+A D + A Sbjct: 605 GA-GGGTTFPIDPEFVARLLGFEQ---------------PAPNSLDAVASRDGVLHFLSA 648 Query: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPEN-EPGSSIMPGKVNPTQCEAITQVCAH 339 + +T L ++A D++ L + L + LP+ GSS++P K NP E + Sbjct: 649 MAAISTVLSRLAQDLQ-LWTTREFAL--VSLPDALTGGSSMLPQKKNPFLLEFVKGRAGV 705 Query: 340 IFGNHAAITFANSQGHF--ELNVYKPMIAYNVLQSIQLLSDSID--SFTINCIEGIQAR 394 + G A+ + A + F PM + Q+ + D+ I+ +E QAR Sbjct: 706 VAGALASASAALGKTPFSNSFEAGSPMNG-PIAQACAAIEDAAAVLVLLIDGLEADQAR 763 >gnl|CDD|178252 PLN02646, PLN02646, argininosuccinate lyase. Length = 474 Score = 47.0 bits (112), Expect = 1e-05 Identities = 82/377 (21%), Positives = 142/377 (37%), Gaps = 62/377 (16%) Query: 53 QAAARVNIELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISN 112 +A A + + G + + ++I+ +E+ F W+ +V+ Sbjct: 53 KAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKF---EWRPD-----REDVHMNNEA 104 Query: 113 RAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALT 172 R E++G ++ +S ND T + C + I + ++ L VAL Sbjct: 105 RLTELIGEPAKK---------LHTARSRNDQVATDTRLWCRDAID-VIRKRIKTLQVALV 154 Query: 173 KKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAV 232 + D++ G TH Q A P+ L + Q++ R+ + G A+ Sbjct: 155 ELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCAL 214 Query: 233 -GTGLNTPVGFAEKVAQNIRDITG--LPFITAP--NKFEALACHDAIAFCHGAINTSATA 287 GTGL P+ R +T L F TAP N +A++ D + A + +A Sbjct: 215 AGTGL--PID---------RFMTAKDLGF-TAPMRNSIDAVSDRDFVLEFLFANSITAIH 262 Query: 288 LFKIANDIRFLGSGPRSGLGELMLPEN-EPGSSIMPGKVNPTQCEAITQVCAHIFGNHAA 346 L ++ + S G + + GSSIMP K NP E + A + G+ Sbjct: 263 LSRLGEEWVLWASEE---FGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGD--L 317 Query: 347 ITFANSQGHFELNVYK--PMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARK 395 +T L + K P AYN + S+ +SD ++ + I Sbjct: 318 VTV--------LALCKGLPT-AYNRDLQEDKEPLFDSVDTVSDMLE-VATEFAQNITFNP 367 Query: 396 ENIQLSLNRSLMLVTAL 412 E I+ SL ++ T L Sbjct: 368 ERIKKSLPAGMLDATTL 384 >gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase. Length = 458 Score = 46.7 bits (111), Expect = 1e-05 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 41/209 (19%) Query: 154 ERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIK 213 E + +LPT+ + A++ +F + + RTH Q A+P TLG+E + +A + + Sbjct: 140 EGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYR----LS 195 Query: 214 RIEMTLDGLYELAQGGTAVGTGLNTPVGFAE----KVAQNIRDITGLPFITAPNKFEALA 269 R L + + AVG + E VA+ GL F + E Sbjct: 196 RQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVTQIEP-- 253 Query: 270 CHDAIAFCHGAINTSATALFKIANDI-RFLGSG---PRSGLGELMLPENEPGSSIMPGKV 325 HD +A A++ L DI ++ G + GE+ GSS MP KV Sbjct: 254 -HDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEV-------GSSTMPHKV 305 Query: 326 NPTQCEAITQVCAHIFGNHAAITFANSQG 354 NP I F NS+G Sbjct: 306 NP-------------------IDFENSEG 315 >gnl|CDD|181586 PRK08937, PRK08937, adenylosuccinate lyase; Provisional. Length = 216 Score = 46.6 bits (111), Expect = 2e-05 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 7/136 (5%) Query: 272 DAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCE 331 D I TS K AN+IR L E + + GSS MP K NP E Sbjct: 17 DIAEIVLALIATSLE---KFANEIRLL-QRSEIREVEEPFAKGQKGSSAMPHKRNPIGSE 72 Query: 332 AITQVCAHIFGNHAAITFANSQGHFELNV-YKPMIAYNVLQSIQLLSDSIDSFTINCIEG 390 IT + + H E ++ + + + L D I + +N +E Sbjct: 73 RITGLARVLRSYLVTALENVPLWH-ERDLSHSSAERIALPDAF-LALDYILNRFVNILEN 130 Query: 391 IQARKENIQLSLNRSL 406 + ENI+ +L+++L Sbjct: 131 LVVFPENIERNLDKTL 146 >gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional. Length = 452 Score = 45.0 bits (107), Expect = 4e-05 Identities = 61/211 (28%), Positives = 82/211 (38%), Gaps = 33/211 (15%) Query: 147 AIHIACAERIVH----------------------RLLPTLRNLHVALTKKISDFQDIIKI 184 A A A R VH L P L L AL + + + Sbjct: 92 AARDAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMV 151 Query: 185 GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAE 244 GRT Q A P+TLG +F+G+ + +R+ L Q G A GT L + A Sbjct: 152 GRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVL-QFGGAAGT-LASLGEQAL 209 Query: 245 KVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRS 304 VAQ + L P + D IA A+ A L KIA D+ L ++ Sbjct: 210 PVAQALAAELQLALPALPWHTQ----RDRIAEFASALGLLAGTLGKIARDVSLL---MQT 262 Query: 305 GLGELMLP--ENEPGSSIMPGKVNPTQCEAI 333 +GE+ P + GSS MP K NP C A+ Sbjct: 263 EVGEVFEPAAAGKGGSSTMPHKRNPVGCAAV 293 >gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional. Length = 442 Score = 45.1 bits (107), Expect = 4e-05 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 14/204 (6%) Query: 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 +S+D TA+ + + + ++ ++NL A+ K+ + +D + +GR+H P+T G Sbjct: 93 TSSDCIDTAVALQMRDSL-KLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFG 151 Query: 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF 258 + + ++K +K +E T++ + + + A+G + P+ E V + + GL Sbjct: 152 LVLAIWYDEIKRHLKALEHTME-VISVGKISGAMGNFAHAPLELEELVCEEL----GLKP 206 Query: 259 ITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGL--GELMLPENEP 316 N+ + D A A+ A++ KIA IR L R+ + E + + Sbjct: 207 APVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHL---QRTEVYEAEEYFSKGQK 260 Query: 317 GSSIMPGKVNPTQCEAITQVCAHI 340 GSS MP K NP E IT +C I Sbjct: 261 GSSAMPHKRNPVLSENITGLCRVI 284 >gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional. Length = 459 Score = 40.9 bits (97), Expect = 6e-04 Identities = 72/303 (23%), Positives = 108/303 (35%), Gaps = 69/303 (22%) Query: 139 SSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLG 198 S ND T + + + I + L L AL + D I G TH Q A P+T G Sbjct: 110 SRNDQVATDLRLYLRDEID-EIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFG 168 Query: 199 QEFSGYATQVKNSIKRIEMTLDGLYELAQG---GTAVGTGLNTPV---------GFAEKV 246 YA + R L + G+A G P+ GF + V Sbjct: 169 HHLLAYA----EMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRERTAELLGF-DGV 223 Query: 247 AQNIRDITGLPFITAPNKFEALACHD-AIAFCHGAINTSATALFKIANDIRFLGSGPRSG 305 +N D A++ D A+ F A + L ++A ++ L S G Sbjct: 224 TENSLD--------------AVSDRDFALEFLS-AASLLMVHLSRLAEEL-ILWSSQEFG 267 Query: 306 LGELMLPENEP-----GSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360 EL P GSSIMP K NP E I ++GN + L V Sbjct: 268 FVEL------PDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGL----------LTV 311 Query: 361 YK--PMIAYN---------VLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLV 409 K P+ AYN + ++ L S+++ +E + KE ++ + + Sbjct: 312 MKGLPL-AYNRDLQEDKEPLFDAVDTLKLSLEAMAG-MLETLTVNKERMREAAGKGFSTA 369 Query: 410 TAL 412 T L Sbjct: 370 TDL 372 >gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional. Length = 435 Score = 36.1 bits (84), Expect = 0.022 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 31/186 (16%) Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219 LL L + AL K+ + +D IGR+H A P T G + + + + + +R+ Sbjct: 116 LLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAR 175 Query: 220 DGLYELAQGGT--AVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALAC------- 270 + E+A AVGT N E VA+ + GL K E ++ Sbjct: 176 E---EIATCAISGAVGTFANIDPRVEEHVAKKL----GL-------KPEPVSTQVIPRDR 221 Query: 271 HDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLP--ENEPGSSIMPGKVNPT 328 H A+ F + A+++ ++A +IR L R+ + E + GSS MP K NP Sbjct: 222 H-AMFFA--TLGVIASSIERLAIEIRHL---QRTEVLEAEEFFSPGQKGSSAMPHKRNPV 275 Query: 329 QCEAIT 334 E +T Sbjct: 276 LTENLT 281 >gnl|CDD|102352 PRK06389, PRK06389, argininosuccinate lyase; Provisional. Length = 434 Score = 35.3 bits (81), Expect = 0.039 Identities = 53/232 (22%), Positives = 86/232 (37%), Gaps = 37/232 (15%) Query: 173 KKISDFQDIIKI-----------GRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDG 221 + +IIK+ G TH + A P+T + Y +K+ + LD Sbjct: 124 EIEKILYEIIKVIPGFNLKGRLPGYTHFRQAMPMT----VNTYINYIKSILYHHINNLDS 179 Query: 222 -LYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280 L +L + G+G +P + + I P + + I Sbjct: 180 FLMDLREMPYGYGSGYGSPSSVKFNQMSELLGME--KNIKNP-VYSSSLYIKTIENISYL 236 Query: 281 INTSATALFKIAND-IRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAH 339 I++ A L +I D I + +G + + E GSS+MP K NP E + A Sbjct: 237 ISSLAVDLSRICQDIIIYYENGIIT-----IPDEFTTGSSLMPNKRNPDYLELFQGIAA- 290 Query: 340 IFGNHAAITFANSQGHFELNVYKPMIAYNVLQSIQLLSDSIDSFTINCIEGI 391 +I+ + ELN Y+ + Q++ DS SF IN E I Sbjct: 291 -----ESISVLSFIAQSELN---KTTGYH--RDFQIVKDSTISF-INNFERI 331 >gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional. Length = 431 Score = 33.1 bits (76), Expect = 0.14 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 13/177 (7%) Query: 160 LLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTL 219 LL L +L A+ + + ++ + IGR+H A P+T G + +G+ + + +R+ L Sbjct: 113 LLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLV-RL 171 Query: 220 DGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHG 279 + Q AVGT NT +V GL TA + + D A Sbjct: 172 REDIAVGQISGAVGTYANTD----PRVEAITCQKLGLKPDTASTQ---VISRDRHAEYVQ 224 Query: 280 AINTSATALFKIANDIRFLGSGPRSGLGEL--MLPENEPGSSIMPGKVNPTQCEAIT 334 + +L + A +IR L R+ + E+ + + GSS MP K NP + E ++ Sbjct: 225 TLALVGASLERFATEIRNL---QRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLS 278 >gnl|CDD|163089 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. Length = 758 Score = 32.3 bits (74), Expect = 0.28 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 23/72 (31%) Query: 220 DGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPF----ITAPNKFEALACHDAIA 275 DG L GGT +G GLNT KVAQ + + + ITA + D + Sbjct: 457 DGSIHLNHGGTEMGQGLNT------KVAQVVAEEFQVDIDRVKITATDT-------DKVP 503 Query: 276 FCHGAINTSATA 287 NTSATA Sbjct: 504 ------NTSATA 509 >gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional. Length = 502 Score = 31.9 bits (72), Expect = 0.38 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 15/207 (7%) Query: 131 NDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQ 190 N H+ +S ND T ++ R V RL+ L ++ + +D ++ I THTQ Sbjct: 109 NMHIG--RSRNDMGVTMYRMSL-RRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQ 165 Query: 191 DATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNI 250 A P T G ++ ++R++ T L + G A+ T + P+ E+VA Sbjct: 166 PAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALST-TSFPIK-RERVAD-- 221 Query: 251 RDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELM 310 + G + N ++A+A D + + T + +D L + G+ + Sbjct: 222 --LLGFTNVIE-NSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGI-TVA 277 Query: 311 LPENEPGSSIMPGKVNPTQCE---AIT 334 P + SSIMP K NP E AIT Sbjct: 278 RPYVQI-SSIMPQKRNPVSIEHARAIT 303 >gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. Length = 502 Score = 29.6 bits (67), Expect = 1.9 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 219 LDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNK 264 +D LY L GT G G+ +G A+ A+ + P Sbjct: 458 IDNLY-LVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGPEPDPPA 502 >gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 Score = 28.7 bits (65), Expect = 3.4 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 353 QGHF---ELNVYKPMIAYNVLQSIQLLSDSIDSFTIN 386 F E Y+P+I N+L+S++ L D+++ I Sbjct: 46 GDGFSQEERREYRPLIYSNILESMKALVDAMEELNIP 82 >gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional. Length = 347 Score = 28.3 bits (63), Expect = 5.0 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%) Query: 155 RIVHRLLPTLRNLHVALTKKI------SDFQDIIKIGRTHTQDATPLTLGQEFSGYATQV 208 R+ +P +++ L K SD I K G H P+TLG EFSGY V Sbjct: 13 RVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYY---PITLGHEFSGYVEAV 68 >gnl|CDD|179731 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed. Length = 149 Score = 27.5 bits (62), Expect = 8.2 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 8/55 (14%) Query: 44 IIRALGIIK---QAAARVNIELGKLDP--KIG---EAIVKASEEVINGKLDDHFP 90 + AL IK + AR LDP K+G + ++ EE + ++ P Sbjct: 23 VEYALTGIKGIGRRTARAIARKLGLDPNAKLGYLSDEEIEKIEEALEDPAEEGIP 77 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.133 0.380 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,290,020 Number of extensions: 467529 Number of successful extensions: 949 Number of sequences better than 10.0: 1 Number of HSP's gapped: 925 Number of HSP's successfully gapped: 46 Length of query: 463 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 366 Effective length of database: 3,898,497 Effective search space: 1426849902 Effective search space used: 1426849902 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.6 bits)