BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus
Liberibacter asiaticus str. psy62]
(463 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 463
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60
MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI
Sbjct: 1 MTNTRNEQDSFGTMKVQEDRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNI 60
Query: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120
ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG
Sbjct: 61 ELGKLDPKIGEAIVKASEEVINGKLDDHFPLVVWQTGSGTQSNMNVNEVISNRAIEILGG 120
Query: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180
VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD
Sbjct: 121 VMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHVALTKKISDFQD 180
Query: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240
IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV
Sbjct: 181 IIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGGTAVGTGLNTPV 240
Query: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS
Sbjct: 241 GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGAINTSATALFKIANDIRFLGS 300
Query: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV
Sbjct: 301 GPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHIFGNHAAITFANSQGHFELNV 360
Query: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN
Sbjct: 361 YKPMIAYNVLQSIQLLSDSIDSFTINCIEGIQARKENIQLSLNRSLMLVTALTSKIGYDN 420
Query: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH
Sbjct: 421 ASMIAKKAHHNSTTLKEEAIASGLISATEYDLIVKPEKMIYPH 463
>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 435
Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 16/246 (6%)
Query: 93 VWQTGSGTQSN----MNVNEVISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAI 148
+W+ G N M ++ +I + I L + P H + +S+D T
Sbjct: 48 IWEKGRNAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGM--TSSDILDTCF 105
Query: 149 HIACAERIVHRLLPTLRNLHVALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQV 208
I R LL + L +L K+ +++D + IGR+H A P T G + + +
Sbjct: 106 SIQLM-RSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGIHAEPTTFGLKLAMAYAEF 164
Query: 209 KNSIKRIEMTLDGLYELAQGGTAVGTGLNTPVGFAEKVAQNIRDITGLPFITAPNKFEAL 268
S KR+ + + A G+ VGT N V Q++ D GL T P + +
Sbjct: 165 SRSRKRLLTAREEIAVCAISGS-VGTFSN----IHPYVEQHVADAMGLK--TDPISSQVI 217
Query: 269 ACHDAIAFCHGAINTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPT 328
A D A + A+++ ++A +IR L + E P + GSS MP K NP
Sbjct: 218 A-RDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHP-GQKGSSSMPHKRNPI 275
Query: 329 QCEAIT 334
E +T
Sbjct: 276 LTENLT 281
>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 473
Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 49/335 (14%)
Query: 110 ISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHV 169
I R ++G + G ++ +S ND + + E+ + + L+ L
Sbjct: 97 IEARLTSLIGSIAGK---------MHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLT 146
Query: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229
L K + + I G TH Q A P+T G Y I R +++ L E G
Sbjct: 147 ILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA 206
Query: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280
A+ G + P+ GF E +I ++ FI L C A C
Sbjct: 207 AALA-GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFI--------LECLSHSAIC--- 254
Query: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHI 340
A + ++A +I L S P+ L GSSIMP K NP E + I
Sbjct: 255 ----AMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRI 308
Query: 341 FGNHAAITFANSQGHFELNVYKPMI-----AYNVLQSIQLLSDSIDSFTINCIEGIQARK 395
N A ++ L K M ++ L+++Q++ +I + IE + K
Sbjct: 309 --NGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAM----IEDLTVNK 362
Query: 396 ENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHH 430
+ +Q + +S T L + +A + ++AH+
Sbjct: 363 DRLQEAATKSHSTATDLADWL-VSHAGLPFREAHY 396
>gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 438
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 180 DIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYE 224
DI I +T+TQ + LG+E S ++ + DG+YE
Sbjct: 315 DICSIAKTNTQKSVSWALGKESSSFSV----------IHCDGVYE 349
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 253 ITGLPF--ITAPNKFEALACHDAIAFCHGAINTSATALFKIANDI-RFLGSGPRSGLGEL 309
I G P + P++++ CH +N S +FK A R +G + L
Sbjct: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
Query: 310 MLPENEPGSSIM 321
L PG SI+
Sbjct: 100 WLISTRPGMSII 111
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 23.9 bits (50), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 19 DRYWGAQAQRSLENFKIGEEKQPLVIIRALGIIKQAAARVNIELGKLDPKIGEAIVKASE 78
DRY+ AQ L+ K ++ V+ + +I+Q A + + KL KI + + A E
Sbjct: 425 DRYFDAQKPWELK--KTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDILFVADE 482
Query: 79 EVINGKLD 86
LD
Sbjct: 483 NRCFQSLD 490
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 411 ALTSKIGYDNASMIAKKAHHNSTTLKEEAIASG 443
+ + I Y +I +K + + TTL+ + I G
Sbjct: 70 VIPTSISYGTIKIICRKKYFDITTLRSDLITDG 102
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,095
Number of Sequences: 1233
Number of extensions: 10833
Number of successful extensions: 34
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 11
length of query: 463
length of database: 328,796
effective HSP length: 77
effective length of query: 386
effective length of database: 233,855
effective search space: 90268030
effective search space used: 90268030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)