HHsearch alignment for GI: 254780191 and conserved domain: COG0013

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=2376.44  Aligned_cols=860  Identities=50%  Similarity=0.838  Sum_probs=820.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHC
Q ss_conf             97878999999999997898891166756677871002301434755400588799999851115432248987863434
Q gi|254780191|r    1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNV   80 (898)
Q Consensus         1 m~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~V   80 (898)
T Consensus         5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~----NDieNV   80 (879)
T COG0013           5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDIDNV   80 (879)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCEECCCCCCCC----CCHHHC
T ss_conf             5779999999999998779734578886789999768960463014113217888999970010212014----766543


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCC
Q ss_conf             64885001788854223147537889998998613341898123799971882899997566349998997535786665
Q gi|254780191|r   81 GRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNF  160 (898)
Q Consensus        81 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNf  160 (898)
T Consensus        81 G~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNf  160 (879)
T COG0013          81 GYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNF  160 (879)
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHCCCCHHHEEECCCCCCC
T ss_conf             76654106777650570667788999999999987450898789799994586678888876329988984535767887


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCC-CCCCCCCEEEEEEHHHHHHHCC-CCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             45799999877046788538556898887-7788982689600112344304-788756576653101757999999988
Q gi|254780191|r  161 WSMAETGPCGPCSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMGLERMATVLQ  238 (898)
Q Consensus       161 W~~g~~GpcGPcsEi~~d~g~~~~~~~~~-~~~~~~r~lEiwNlVFmq~~~~-~~g~~~~Lp~~~IDTGmGLERl~~vlq  238 (898)
T Consensus       161 W~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ  239 (879)
T COG0013         161 WEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQ  239 (879)
T ss_pred             CCCCC-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             77888-68888558997677666888778867778826897564301101379998755188877156866999999984


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             798530057699999999973067854335---02489999989899998740333344464125778899999999984
Q gi|254780191|r  239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL  315 (898)
Q Consensus       239 g~~s~ydtD~f~pii~~i~~~~g~~y~~~~---~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~l  315 (898)
T Consensus       240 ~~~tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~L  319 (879)
T COG0013         240 GVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLL  319 (879)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99962144406899999999709767766544432589864578889999837776687773099999999999999974


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf             87433104568999998645555557646788999987489899999989999999986115464245743799852458
Q gi|254780191|r  316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG  395 (898)
Q Consensus       316 g~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyG  395 (898)
T Consensus       320 G~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ge~afkLYDTyG  399 (879)
T COG0013         320 GIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAFKLYDTYG  399 (879)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEHHCCC
T ss_conf             99936899999999999865667777778999999999999999999999999999998621477357677402310579


Q ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             88899998766507744358889999999997644433110012013567888730488626434444432111222111
Q gi|254780191|r  396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV  475 (898)
Q Consensus       396 fP~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~~~~~~~~~~~~~  475 (898)
T Consensus       400 fP~eLt~eia~e~g~~-VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~----------  467 (879)
T COG0013         400 FPVELTEEIAEERGLK-VDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLEM----------  467 (879)
T ss_pred             CCHHHHHHHHHHCCCE-ECCCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHCCCCCCEEEECCCCCC----------
T ss_conf             9989999999984985-354467999999999866300-2354310134456540478843651156641----------


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCCEEEEEECCCCEEECCCCCCCCCCEEEEC-CEEEEEECCCCCCCEEE
Q ss_conf             34445445556553489999747813200047976999973752000368765665145404-24898522456553389
Q gi|254780191|r  476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIF  554 (898)
Q Consensus       476 ~~~~~~~~~~~~~~s~v~~i~~~~~~v~~~~~g~~~~ivLd~T~FY~E~GGQ~~D~G~i~~~-~~~~~V~dv~k~~~g~i  554 (898)
T Consensus       468 -------------~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~~~  534 (879)
T COG0013         468 -------------EFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVI  534 (879)
T ss_pred             -------------EEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEE
T ss_conf             -------------2799999955844022367853799984687557889967765899955882899988787179669


Q ss_pred             EEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHH
Q ss_conf             98510467875567338884212556777520136889999975212544444553002430000024767899999999
Q gi|254780191|r  555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS  634 (898)
Q Consensus       555 ~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~  634 (898)
T Consensus       535 vH~~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~  614 (879)
T COG0013         535 VHKGKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKE  614 (879)
T ss_pred             EEEEEECCCCCCCCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf             99985046766889889999889999999862769999999999973732120676467770688531788899999999


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCC
Q ss_conf             99999898873045304661232221000355443155562489984476778553101562225886460110011012
Q gi|254780191|r  635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES  714 (898)
Q Consensus       635 IE~~vN~~I~~n~~V~~~~~~~~eA~~~ga~alfgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~  714 (898)
T Consensus       615 IE~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig-----~~SvElCGGTHv~~Tg~IG~fkI~~e~  689 (879)
T COG0013         615 IERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIG-----DFSVELCGGTHVSNTGDIGLFKIISEE  689 (879)
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHCHHHHCCCCCCCEEEEEEEC-----CCEEECCCCCCCCCCCCEEEEEEEEEC
T ss_conf             999999999828941489736999997192965288679868999989-----915661377456775650117998764


Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--
Q ss_conf             126882899997168999999999999999999839998899999999999999999999999999876365-----3--
Q gi|254780191|r  715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----S--  787 (898)
Q Consensus       715 si~sGvRRIeavtG~~A~~~~~~~~~~l~~la~~L~~~~~~i~~ki~~L~~e~K~l~k~~~k~k~~~~~~~~-----~--  787 (898)
T Consensus       690 ~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~  768 (879)
T COG0013         690 GIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAK  768 (879)
T ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             1306758999982789999999999999999998689-866788999999999999999999999998888776530110


Q ss_pred             HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             55536952799995799978999999999975499789999953898179999867789726798999999998834999
Q gi|254780191|r  788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG  867 (898)
Q Consensus       788 ~~~i~~~~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGg  867 (898)
T Consensus       769 ~~~i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~vivl~~~~-~~Kv~~~~~v~~~~~~~~~a~~lvk~la~~~-gG~  846 (879)
T COG0013         769 AEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIVLASVA-DGKVSLVVAVSKDLTDKVKAGELVKELAAIV-GGK  846 (879)
T ss_pred             CEEECCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-CCEEEEEEEECHHHHCCCCHHHHHHHHHHHC-CCC
T ss_conf             03328879999994478989999999999750478379999852-7708999996514413548999999999862-998


Q ss_pred             CCCCCHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9998101145899987889999999998619
Q gi|254780191|r  868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK  898 (898)
Q Consensus       868 GGGkpd~AQgGG~~~~~l~eal~~vk~~Lke  898 (898)
T Consensus       847 GGGr~d~Aqggg~d~~~~~~al~~~~~~~~~  877 (879)
T COG0013         847 GGGRPDMAQGGGKDPEKLDEALELVIEWVKE  877 (879)
T ss_pred             CCCCHHHHEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             8896255211789833289999999999984