HHsearch alignment for GI: 254780191 and conserved domain: cd00673
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=0 Score=838.71 Aligned_cols=232 Identities=53% Similarity=0.957 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCC
Q ss_conf 78999999999997898891166756677871002301434755400588799999851115432248987863434648
Q gi|254780191|r 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRT 83 (898)
Q Consensus 4 ~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~VG~t 83 (898)
T Consensus 1 s~eiR~~Fl~fF~~~gH~~vpssslvp~~DptllFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~----~di~nvG~t 76 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRA----GDIDNVGKT 76 (232)
T ss_pred CHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCEEEEECCCC----CCCCCCCCC
T ss_conf 9689999999998789888278772238999501441146888998677889998751000012365----783246777
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCC
Q ss_conf 85001788854223147537889998998613341898123799971882899997566349998997535786665457
Q gi|254780191|r 84 NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163 (898)
Q Consensus 84 ~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNfW~~ 163 (898)
T Consensus 77 ~rH~TfFEMLGnfSFGdYfK~eaI~~awe~lt~~~~l~~~rlyvTv~~~Dde~~~~~~~~~gi~~~~i~~~~~~dNfW~~ 156 (232)
T cd00673 77 GRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEM 156 (232)
T ss_pred CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHEEECCCCCCCCCC
T ss_conf 76402333044420314589999999999875123768562426674697799999997419988983466776667869
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 99999877046788538556898887778898268960011234430478875657665310175799999998879
Q gi|254780191|r 164 AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 (898)
Q Consensus 164 g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~ 240 (898)
T Consensus 157 G~~GPcGPcsEI~yd~g~~~~~-~~~~~~~~~r~lEiwNlVFmqy~r~~dg~l~~Lp~k~IDTGmGlERl~~vlQgv 232 (232)
T cd00673 157 GGNGPCGPCSEIFYDRGEERDA-ASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHCCC
T ss_conf 9987998767789757777788-657788899889986731375200699976508998141683799999998379