HHsearch results for GI: 254780191 and protein with PDBid: 1j5w_A
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=98.20 E-value=3e-05 Score=58.25 Aligned_cols=172 Identities=23% Similarity=0.331 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH---
Q ss_conf 787899999999999789889116675667787100230143475540-0588799999851115432248987863---
Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL--- 77 (898)
Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl--- 77 (898)
|+..+|-.+--+|+.++|+.++.++.+= +.|| .|-|. |+..--|.--+++-+|||.|- .|=
T Consensus 13 m~fq~~i~~L~~fW~~~GC~i~qpyd~e---------vGAg--T~~P~T~lr~lgp~pw~~aYvqPsrRP----~DgRYG 77 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME---------VGAG--TFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRYG 77 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC---------CSSG--GGSHHHHTGGGCSSCEEEEEEEEEECC----C-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCC----CCCCCC
T ss_conf 2299999999999987796887675542---------4646--688899986319876326642467799----988767
Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCC-HHHEEECCC
Q ss_conf 4346488500178885422314753788999899861334189812379997188289999756634999-899753578
Q gi|254780191|r 78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLS-ADKIIRITT 156 (898)
Q Consensus 78 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~-~~~i~~~~~ 156 (898)
+|--+ -.||.=|.-+=-=|..+ =+|-|--=++.+||. .+|=++|-
T Consensus 78 eNPNR-Lq~y~QfQVilKPsp~n--------------------------------~q~lYL~SL~~igid~~~hDIrFv- 123 (298)
T 1j5w_A 78 ENPNR-LQRYFQYQVIIKPSPEN--------------------------------SQELYLESLEYLGINLKEHDIRFV- 123 (298)
T ss_dssp CCTTC-CSEEEEEEEEEESCCSS--------------------------------HHHHHHHHHHHTTCCTTTSCEEEE-
T ss_pred CCCCH-HCEEEEEEEEECCCCHH--------------------------------HHHHHHHHHHHHCCCCCCCCEEEE-
T ss_conf 89323-11003458997789466--------------------------------899999999983999202144786-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 66654579999987704678853855689888777889826896001123443047887565766531017579999999
Q gi|254780191|r 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 (898)
Q Consensus 157 ~dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~v 236 (898)
+|| |+----|.-|--=||-.| ++||--.-..| +-.| .++.--.+.--|||||||+.
T Consensus 124 eDn-WEsPtLGAwGlGWEVwld------------------GMEItQFTYFQ---QvGG--i~c~pv~~EiTYGLERiaMy 179 (298)
T 1j5w_A 124 EDN-WESPTLGAWGVGWEVWLD------------------GMEITQFTYFQ---QIGG--ISLKDIPLEITYGLERIAMY 179 (298)
T ss_dssp EEC-CEEGGGTEEEEEEEEEET------------------TEEEEEEEEEE---EBTT--BCCSSCCEEEEEEHHHHHHH
T ss_pred ECC-CCCCCCCCEEEEEEEEEC------------------CEEEEEEEEEE---EECC--EECCCCCHHHHHHHHHHHHH
T ss_conf 227-778761211200599988------------------76875244031---1277--53344220100249999999
Q ss_pred HCCCCCCCHH
Q ss_conf 8879853005
Q gi|254780191|r 237 LQEKTNNYDI 246 (898)
Q Consensus 237 lqg~~s~ydt 246 (898)
+|++.++||+
T Consensus 180 lQ~vdnv~Dl 189 (298)
T 1j5w_A 180 LQGVDNVYEV 189 (298)
T ss_dssp HHTCSSGGGC
T ss_pred HHCCCHHHCC
T ss_conf 8487335030