HHsearch results for GI: 254780191 and protein with PDBid: 1qf6_A
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.92 E-value=1.9e-08 Score=83.26 Aligned_cols=137 Identities=20% Similarity=0.368 Sum_probs=94.9
Q ss_pred HCCCHHHHHHHHHHHCCCC-CCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf 2013688999997521254-444455300243000002476789999999999999898873045304661232221000
Q gi|254780191|r 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 (898)
Q Consensus 585 ~~HTatHlL~~alr~vLG~-hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~g 663 (898)
-.||+.|||.+|+.++++. ++.- |-.++ +-+=.||.-..++|+++|.+||+.++++|.+|+|+....++.++|.+..
T Consensus 71 ~~~S~a~vl~~Av~~l~p~~kl~i-gp~i~-~Gfyyd~~~~~~~t~~dl~~Ie~~M~~ii~~~~~i~r~~~~~~~A~~~f 148 (642)
T 1qf6_A 71 IRHSCAHLLGHAIKQLWPHTKMAI-GPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETF 148 (642)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEECC-CCEET-TEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE-CCCCC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
T ss_conf 999999999999999769987997-78658-8789997149999999999999999999732586279997578999987
Q ss_pred H-------HHHHHHC--CCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCC-------CCCCEEEEEEE
Q ss_conf 3-------5544315--556248998447677855310156222588646011001101212-------68828999971
Q gi|254780191|r 664 A-------AALLGTK--YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727 (898)
Q Consensus 664 a-------~alfgek--ygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si-------~sGvRRIeavt 727 (898)
. ..+..+. ..+.|-+-..++ | +.+|-|.||.|||.|+.||+++.++- ..-..||..++
T Consensus 149 ~~~~~~~k~~li~~~~~~~~~i~~y~~g~-----f-~Dlc~Gphvp~T~~ik~fkL~~~~~ayw~gd~~~~~l~Riyg~a 222 (642)
T 1qf6_A 149 ANRGESYKVSILDENIAHDDKPGLYFHEE-----Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (642)
T ss_dssp HHHTCHHHHHHHHHHSCTTCCCEEEEETT-----E-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred HHCCCCHHHHHHHCCCCCCCCEEEEECCC-----E-EEECCCCCCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHHHH
T ss_conf 63135045666530356676337996287-----7-98448877898766621467531312765887236767677664
Q ss_pred CH
Q ss_conf 68
Q gi|254780191|r 728 GQ 729 (898)
Q Consensus 728 G~ 729 (898)
=.
T Consensus 223 f~ 224 (642)
T 1qf6_A 223 WA 224 (642)
T ss_dssp CS
T ss_pred HC
T ss_conf 16