HHSEARCH alignment of GI: 254780191 and SCOP domain: d1nyra3

Alignment
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.96  E-value=2.9e-29  Score=244.41  Aligned_cols=149  Identities=23%  Similarity=0.375  Sum_probs=131.0

Q ss_pred             EHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             21255677752013688999997521254444455300243000002476789999999999999898873045304661
Q gi|254780191|r  575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM  654 (898)
Q Consensus       575 VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~  654 (898)
                      .|.+.+..+++ ||||||||+|||++||+|+.|.||.+. +.+||||+|+.++|+++|.+||+.+|++|.+|+|++..++
T Consensus         2 ~~~~~~l~i~~-HSathlL~~Al~~~~~~~~~~~G~~~~-~gf~~Df~~~~~lt~edl~~IE~~m~~iI~~~~~i~~~~~   79 (179)
T d1nyra3           2 PGSEEALEVLR-HSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVV   79 (179)
T ss_dssp             TTSHHHHHHHH-HHHHHHHHHHHHHHSSSCEECCCCEET-TEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEEEEEC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             86878999986-769999999999977985897753004-6348998615668788999999999999872034388873


Q ss_pred             CCCCCCCC-----HHHHHHHHCCCC-CEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCC----CCCCEEEE
Q ss_conf             23222100-----035544315556-248998447677855310156222588646011001101212----68828999
Q gi|254780191|r  655 NREDAIAS-----GAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI----RAGIRRIE  724 (898)
Q Consensus       655 ~~~eA~~~-----ga~alfgekygd-~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si----~sGvRRIe  724 (898)
                      ++++|++.     +...+++++|++ .|||...+     + ++||||||||.|||+||.|||++++++    .++++|++
T Consensus        80 ~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g-----~-~~dlC~G~Hv~~T~~I~~fki~~~sgay~~g~~~~~~L~  153 (179)
T d1nyra3          80 SRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG-----D-FTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQ  153 (179)
T ss_dssp             TTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET-----T-EEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEE
T ss_pred             CHHHHHHHHCCCCCCEEHHHHCCCCCCEEEEEEC-----C-EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHEE
T ss_conf             7999999863581310011103799837998408-----8-799518977764001570478874044345765505521


Q ss_pred             EEECHHH
Q ss_conf             9716899
Q gi|254780191|r  725 AITGQRA  731 (898)
Q Consensus       725 avtG~~A  731 (898)
                      .+.|..+
T Consensus       154 ri~G~a~  160 (179)
T d1nyra3         154 RIYGTAF  160 (179)
T ss_dssp             EEEEEEE
T ss_pred             EEHHHCC
T ss_conf             1276423


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]