HHSEARCH alignment of GI: 254780191 and SCOP domain: d1riqa1

Alignment
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=507.27  Aligned_cols=217  Identities=38%  Similarity=0.632  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             05769999999997306785433--5024899999898999987403333444641257788999999999848743310
Q gi|254780191|r  245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM  322 (898)
Q Consensus       245 dtD~f~pii~~i~~~~g~~y~~~--~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl  322 (898)
                      |||+|.|||+++++++|++|+.+  .++||||||||+||++|||+|||+|||+|||||||||||||+||+++||++.|||
T Consensus         1 etDlf~pii~~i~~~~~~~Y~~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~lg~~~~~l   80 (221)
T d1riqa1           1 EIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFL   80 (221)
T ss_dssp             GSTTTHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCSCCH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             90767999999999968986767666700220577899999999567778867774279999999999998862454224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCCCHHH
Q ss_conf             4568999998645555557646788999987489899999989999999986115--46424574379985245888899
Q gi|254780191|r  323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDI  400 (898)
Q Consensus       323 ~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~--~~~~lsg~~af~LyDTyGfP~dl  400 (898)
                      ++||+.|++.|++.||||.++++.|.++|..||++|.+||++|+++|++.+++..  +++.|||++||+||||||||+||
T Consensus        81 ~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~f~~tl~~G~~~~~~~i~~~~~~~~~~l~g~~af~LydTyGfP~el  160 (221)
T d1riqa1          81 YKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDL  160 (221)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHH
T ss_conf             56689999985100100021799999999999999999999998889999998875278888999999998702568899


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             998766507744358889999999997644433110012013567888730488626434444
Q gi|254780191|r  401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL  463 (898)
Q Consensus       401 t~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~  463 (898)
                      |++||+|+|++ ||+++|+++|++||++||++++..... ....+..+.+...+|+|+||+.+
T Consensus       161 t~eia~e~gl~-vD~~gF~~~m~eqre~Sr~a~k~~~~~-~~~~~~~l~e~~~~T~F~GYe~L  221 (221)
T d1riqa1         161 IDEIAREKGLG-IDLEGFQCELEEQRERARKHFKVEAKK-VKPVYSHLKELGKTSAFVGAAAL  221 (221)
T ss_dssp             HHHHHHTTTCE-ECHHHHHHHHHHHHHHHSCC----------CCCCCTTSHHHHTTTSCTTTC
T ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCCCCEEECCCCC
T ss_conf             99999885430-568889999999999999740656420-47899999834899867598779


SCOP domain information

class: All alpha proteins
fold: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
superfamily: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
family: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
domain: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]