Query gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 898 No_of_seqs 260 out of 2790 Neff 6.2 Searched_HMMs 13730 Date Mon May 23 08:16:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780191.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1riqa2 d.104.1.1 (A:1-236) Al 100.0 0 0 865.8 8.4 235 2-244 2-236 (236) 2 d1riqa1 a.203.1.1 (A:237-457) 100.0 0 0 507.3 11.6 217 245-463 1-221 (221) 3 d2e1ba2 d.67.1.2 (A:88-216) Al 100.0 3.9E-32 2.8E-36 267.0 10.1 126 576-726 1-127 (129) 4 d1v4pa_ d.67.1.2 (A:) Hypothet 100.0 2.7E-29 2E-33 244.6 11.2 141 581-726 3-149 (151) 5 d1nyra3 d.67.1.1 (A:63-241) Th 100.0 2.9E-29 2.1E-33 244.4 10.5 149 575-731 2-160 (179) 6 d1tkea2 d.67.1.1 (A:63-224) Th 99.7 3.6E-16 2.6E-20 141.9 11.1 137 584-727 8-160 (162) 7 d2e1ba1 b.43.3.6 (A:1-87) AlaX 99.4 1.4E-14 1E-18 129.4 2.7 60 511-575 28-87 (87) 8 d1j5wa_ d.104.1.1 (A:) Glycyl- 97.9 6.8E-05 4.9E-09 53.6 9.9 173 2-246 1-177 (281) 9 d1ir6a_ c.107.1.2 (A:) Exonucl 91.7 0.37 2.7E-05 24.3 11.7 91 795-898 282-372 (385) 10 d1nnha_ d.104.1.1 (A:) Hypothe 91.3 0.13 9.7E-06 27.8 4.5 214 5-249 18-283 (293) 11 d1jjca_ d.104.1.1 (A:) Phenyl- 90.9 0.027 2E-06 33.2 0.7 63 170-244 178-249 (266) 12 d1dpta_ d.80.1.3 (A:) D-dopach 76.5 1.4 0.0001 19.9 3.9 28 105-132 75-102 (117) 13 d1uiza_ d.80.1.3 (A:) Micropha 76.0 1.4 0.00011 19.7 3.9 27 105-131 75-101 (115) 14 d2gdga1 d.80.1.3 (A:1-114) Mic 74.3 1.7 0.00012 19.1 3.9 35 97-131 63-100 (114) 15 d1hfoa_ d.80.1.3 (A:) Micropha 73.7 1.8 0.00013 18.9 3.9 26 107-132 76-101 (113) 16 d1eova2 d.104.1.1 (A:205-557) 65.2 0.97 7.1E-05 21.1 1.0 28 222-249 317-344 (353) 17 d1n9wa2 d.104.1.1 (A:111-414) 65.1 0.94 6.8E-05 21.2 0.9 83 5-98 19-113 (304) 18 d1e1oa2 d.104.1.1 (A:161-502) 65.1 0.72 5.2E-05 22.1 0.3 100 5-114 27-144 (342) 19 d1z7ma1 d.104.1.1 (A:6-323) AT 63.3 1.3 9.3E-05 20.1 1.3 18 6-23 20-37 (318) 20 d1b8aa2 d.104.1.1 (A:104-438) 61.1 1.3 9.4E-05 20.1 1.0 87 5-101 38-137 (335) 21 d1l0wa3 d.104.1.1 (A:105-294,A 52.4 4.9 0.00035 15.6 3.7 97 5-113 44-153 (356) 22 d2gdwa1 a.28.1.2 (A:8-83) Pept 48.2 4.7 0.00034 15.7 2.2 24 136-164 12-35 (76) 23 d1c0aa3 d.104.1.1 (A:107-287,A 45.9 6 0.00044 14.8 3.9 114 5-127 36-163 (346) 24 d2di4a1 a.269.1.1 (A:406-607) 44.1 1.7 0.00012 19.2 -0.6 52 346-397 145-196 (202) 25 d1r5ba1 b.43.3.1 (A:460-554) E 43.4 6.5 0.00047 14.6 2.6 29 488-516 47-76 (95) 26 d1wjwa_ d.129.2.1 (A:) Phospho 39.6 7.4 0.00054 14.2 5.8 65 805-873 39-105 (112) 27 d1u9pa1 a.43.1.1 (A:72-107) Ar 38.8 7.6 0.00055 14.1 3.3 30 398-428 4-33 (36) 28 d1iq4a_ d.77.1.1 (A:) Ribosoma 38.2 2.1 0.00016 18.4 -0.9 29 565-600 79-107 (179) 29 d1q46a1 a.60.14.1 (A:89-175) E 37.2 7.3 0.00053 14.2 1.8 53 354-407 9-62 (87) 30 d1p9ba_ c.37.1.10 (A:) Adenylo 36.4 1.4 1E-04 19.9 -2.1 126 270-399 104-232 (424) 31 d1iwea_ c.37.1.10 (A:) Adenylo 36.2 8.2 0.0006 13.8 4.6 113 208-339 55-182 (430) 32 d2i09a2 d.327.1.1 (A:108-226) 35.7 8.4 0.00061 13.7 2.4 18 394-411 6-23 (119) 33 d2giab1 d.18.1.4 (B:28-173) GB 34.9 8.6 0.00063 13.6 2.0 49 548-603 93-141 (146) 34 d1eaqa_ b.2.5.6 (A:) Acute mye 34.0 3.3 0.00024 16.8 -0.4 52 31-89 29-97 (124) 35 d1mwwa_ d.80.1.4 (A:) Hypothet 32.6 9.3 0.00068 13.4 3.0 19 112-130 84-102 (120) 36 d2zjrd1 d.77.1.1 (D:3-179) Rib 30.7 2.2 0.00016 18.2 -1.7 16 131-147 159-174 (177) 37 d1c7ka_ d.92.1.1 (A:) Zinc pro 29.6 8 0.00058 13.9 0.9 19 584-602 72-90 (132) 38 d1tdha3 g.39.1.8 (A:247-290) E 29.4 7.1 0.00052 14.3 0.6 40 132-171 5-44 (44) 39 d2pkgc1 g.92.1.1 (C:91-170) Sm 28.9 7.2 0.00052 14.2 0.6 28 109-146 49-76 (80) 40 d2v7fa1 a.4.5.84 (A:2-150) Rib 27.4 11 0.00082 12.7 4.5 52 289-342 83-148 (149) 41 d2arha1 d.108.1.9 (A:1-196) Hy 25.5 12 0.00088 12.5 3.5 28 722-749 149-176 (196) 42 d1tq5a1 b.82.1.12 (A:1-231) Hy 25.4 5.9 0.00043 14.9 -0.4 13 512-524 66-78 (231) 43 d2aala1 d.80.1.6 (A:1-129) Mal 24.5 13 0.00091 12.3 3.4 15 627-641 11-25 (129) 44 d1ag7a_ g.3.6.1 (A:) Conotoxin 24.4 10 0.00075 13.0 0.7 13 62-77 22-34 (34) 45 d1m45a_ a.39.1.5 (A:) Myosin L 22.5 11 0.0008 12.8 0.5 10 386-395 85-94 (146) 46 d1jb0d_ d.187.1.1 (D:) Photosy 22.3 11 0.00082 12.7 0.6 14 543-556 82-95 (138) 47 d2dgxa1 d.58.7.1 (A:563-635) L 22.0 14 0.001 12.0 1.6 40 804-843 4-43 (73) 48 d2fgea2 d.185.1.1 (A:798-993) 21.8 14 0.001 12.0 1.4 20 800-819 147-166 (196) 49 d1qjta_ a.39.1.6 (A:) Eps15 {M 20.9 10 0.00075 13.0 0.1 48 377-424 23-73 (99) 50 d1rcqa2 c.1.6.1 (A:8-233) Alan 20.8 12 0.00088 12.5 0.5 31 391-422 27-57 (226) No 1 >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=0 Score=865.82 Aligned_cols=235 Identities=54% Similarity=1.022 Sum_probs=230.8 Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC Q ss_conf 78789999999999978988911667566778710023014347554005887999998511154322489878634346 Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81 (898) Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~f~G~~~p~~~r~~~~QkCiR~ggkhnDld~VG 81 (898) ||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++||++|+|++|||||+||||||||||| T Consensus 2 mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~VG 81 (236) T d1riqa2 2 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVG 81 (236) T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTTT T ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC T ss_conf 98899999999999867998857877356999974654101022266646764567776444321401167430223138 Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCCCCCC Q ss_conf 48850017888542231475378899989986133418981237999718828999975663499989975357866654 Q gi|254780191|r 82 RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161 (898) Q Consensus 82 ~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~dNfW 161 (898) +|+|||||||||||||||||||+|||.|||||||++|+|||+|||||||++|+||+++|.+.+|||++||++++.+|||| T Consensus 82 ~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~dNfW 161 (236) T d1riqa2 82 YTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFW 161 (236) T ss_dssp TSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHEE T ss_pred CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEECCCCCCCC T ss_conf 76531105554352013860288899999999888851576424787515748998888760482004415337777724 Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 57999998770467885385568988877788982689600112344304788756576653101757999999988798 Q gi|254780191|r 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 (898) Q Consensus 162 ~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~ 241 (898) +||++||||||||||||+|+++. +++|||||||||||||+|.++|++.|||+|+|||||||||||||+||++ T Consensus 162 ~~g~~GpcGPcsEi~yd~g~~~~--------~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~ 233 (236) T d1riqa2 162 QMGDVGPCGPSSEIYVDRGEEYE--------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKN 233 (236) T ss_dssp ESSSSEEEEEEEEEEEECCTTSC--------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCS T ss_pred CCCCCCCCCCCEEEEECCCCCCC--------CCCCEEEEEEEEHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 06897777765347871333337--------8976566311001000106898654388971658966999999985999 Q ss_pred CCC Q ss_conf 530 Q gi|254780191|r 242 NNY 244 (898) Q Consensus 242 s~y 244 (898) ||| T Consensus 234 s~y 236 (236) T d1riqa2 234 SNF 236 (236) T ss_dssp SGG T ss_pred CCC T ss_conf 899 No 2 >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=0 Score=507.27 Aligned_cols=217 Identities=38% Similarity=0.632 Sum_probs=200.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 05769999999997306785433--5024899999898999987403333444641257788999999999848743310 Q gi|254780191|r 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322 (898) Q Consensus 245 dtD~f~pii~~i~~~~g~~y~~~--~~~~~rvIaDH~Ra~~f~I~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl 322 (898) |||+|.|||+++++++|++|+.+ .++||||||||+||++|||+|||+|||+|||||||||||||+||+++||++.||| T Consensus 1 etDlf~pii~~i~~~~~~~Y~~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~lg~~~~~l 80 (221) T d1riqa1 1 EIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFL 80 (221) T ss_dssp GSTTTHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCSCCH T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 90767999999999968986767666700220577899999999567778867774279999999999998862454224 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCCCHHH Q ss_conf 4568999998645555557646788999987489899999989999999986115--46424574379985245888899 Q gi|254780191|r 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDI 400 (898) Q Consensus 323 ~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~--~~~~lsg~~af~LyDTyGfP~dl 400 (898) ++||+.|++.|++.||||.++++.|.++|..||++|.+||++|+++|++.+++.. +++.|||++||+||||||||+|| T Consensus 81 ~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~f~~tl~~G~~~~~~~i~~~~~~~~~~l~g~~af~LydTyGfP~el 160 (221) T d1riqa1 81 YKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDL 160 (221) T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHH T ss_conf 56689999985100100021799999999999999999999998889999998875278888999999998702568899 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCC Q ss_conf 998766507744358889999999997644433110012013567888730488626434444 Q gi|254780191|r 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 (898) Q Consensus 401 t~eia~e~gi~~vD~~~f~~~m~~qk~~sr~~~~~~~~~~~~~~~~~~~~~~~~t~F~GYe~~ 463 (898) |++||+|+|++ ||+++|+++|++||++||++++..... ....+..+.+...+|+|+||+.+ T Consensus 161 t~eia~e~gl~-vD~~gF~~~m~eqre~Sr~a~k~~~~~-~~~~~~~l~e~~~~T~F~GYe~L 221 (221) T d1riqa1 161 IDEIAREKGLG-IDLEGFQCELEEQRERARKHFKVEAKK-VKPVYSHLKELGKTSAFVGAAAL 221 (221) T ss_dssp HHHHHHTTTCE-ECHHHHHHHHHHHHHHHSCC----------CCCCCTTSHHHHTTTSCTTTC T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHCCCCCEEECCCCC T ss_conf 99999885430-568889999999999999740656420-47899999834899867598779 No 3 >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=99.97 E-value=3.9e-32 Score=266.97 Aligned_cols=126 Identities=27% Similarity=0.351 Sum_probs=116.6 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC-CCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 12556777520136889999975212544444-55300243000002476789999999999999898873045304661 Q gi|254780191|r 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 (898) Q Consensus 576 D~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q-~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~ 654 (898) ||+||+.+||+|||+|||++||++++|++++| .||+++++++||||+++..++++ +.+||+.+|++|.+|+||.+.+ T Consensus 1 Dw~rR~~~mr~HTa~Hll~~al~~~~g~~~~~~~G~~i~~~~~r~Df~~~~~l~~~-~~~ie~~~n~~I~~~~~v~~~~- 78 (129) T d2e1ba2 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFNKYVDEGGEVKIWW- 78 (129) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHHHHHHHCCBEEEEE- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHHHCCCHHHHH- T ss_conf 97899999987079999999999854987654535664565479998355432168-9999999999998610334431- Q ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCCCCCCEEEEEE Q ss_conf 232221000355443155562489984476778553101562225886460110011012126882899997 Q gi|254780191|r 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 (898) Q Consensus 655 ~~~eA~~~ga~alfgekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si~sGvRRIeav 726 (898) .+.+|+|.|+ ++|+++||||||.||++||.|+|++.+++++|+|||++. T Consensus 79 ------------------~~~~Riv~I~-----~~d~~~CgGTHV~~T~eIg~i~I~~~~~~gkg~~RI~~~ 127 (129) T d2e1ba2 79 ------------------EGDRRYTQIR-----DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 127 (129) T ss_dssp ------------------SSSCEEEEET-----TSCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEEEEEE T ss_pred ------------------CCCCEEEEEC-----CCCCCCCCCCCCCCHHHCCCEEEEEEEEEECCCEEEEEE T ss_conf ------------------3540578763-----515255488787365118519999999781881899999 No 4 >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=99.96 E-value=2.7e-29 Score=244.63 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=122.0 Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCCCCCCC-CEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 77752013688999997521254444455-30024300000247678999999999999989887304530466123222 Q gi|254780191|r 581 RQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 (898) Q Consensus 581 ~~~~~~HTatHlL~~alr~vLG~hv~Q~G-S~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA 659 (898) ...||+|||+|||++|++++||.++.|.+ +.+.+++.++||++++++|++++.+||+++|++|++|+||++.+++++|| T Consensus 3 ~~~mR~HTa~HlL~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~t~e~l~~iE~~~n~~I~~~~~v~~~~~~~~ea 82 (151) T d1v4pa_ 3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (151) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 54677768999999999998485760464120357753799863665016789999999987530256641378510000 Q ss_pred CCCHHHHHH-HHCCC---CCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECC-CCCCCCCEEEEEE Q ss_conf 100035544-31555---6248998447677855310156222588646011001101-2126882899997 Q gi|254780191|r 660 IASGAAALL-GTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE-SSIRAGIRRIEAI 726 (898) Q Consensus 660 ~~~ga~alf-gekyg---d~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise-~si~sGvRRIeav 726 (898) ++.....++ ...++ +.||+|.|++ ||.++||||||.|||+||.|||++. .++++|++||+|- T Consensus 83 ~~~~~~~~~~~~~~~~~~~~iriv~i~~-----~d~~~CgGTHV~~T~eIg~~kI~~~~~~~~kg~~Ri~f~ 149 (151) T d1v4pa_ 83 EKMFGEDMYDLFPVPEDVRILKVVVIED-----WNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFE 149 (151) T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEETT-----TEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECC-----CEEECCCCCCCCCHHHCEEEEEEEEEEECCCCCEEEEEE T ss_conf 1113553110235776665048875168-----435178997269864301199988876534782899999 No 5 >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Probab=99.96 E-value=2.9e-29 Score=244.41 Aligned_cols=149 Identities=23% Similarity=0.375 Sum_probs=131.0 Q ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 21255677752013688999997521254444455300243000002476789999999999999898873045304661 Q gi|254780191|r 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 (898) Q Consensus 575 VD~~rR~~~~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~ 654 (898) .|.+.+..+++ ||||||||+|||++||+|+.|.||.+. +.+||||+|+.++|+++|.+||+.+|++|.+|+|++..++ T Consensus 2 ~~~~~~l~i~~-HSathlL~~Al~~~~~~~~~~~G~~~~-~gf~~Df~~~~~lt~edl~~IE~~m~~iI~~~~~i~~~~~ 79 (179) T d1nyra3 2 PGSEEALEVLR-HSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVV 79 (179) T ss_dssp TTSHHHHHHHH-HHHHHHHHHHHHHHSSSCEECCCCEET-TEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEEC T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEEEEEC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC T ss_conf 86878999986-769999999999977985897753004-6348998615668788999999999999872034388873 Q ss_pred CCCCCCCC-----HHHHHHHHCCCC-CEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCC----CCCCEEEE Q ss_conf 23222100-----035544315556-248998447677855310156222588646011001101212----68828999 Q gi|254780191|r 655 NREDAIAS-----GAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI----RAGIRRIE 724 (898) Q Consensus 655 ~~~eA~~~-----ga~alfgekygd-~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si----~sGvRRIe 724 (898) ++++|++. +...+++++|++ .|||...+ + ++||||||||.|||+||.|||++++++ .++++|++ T Consensus 80 ~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g-----~-~~dlC~G~Hv~~T~~I~~fki~~~sgay~~g~~~~~~L~ 153 (179) T d1nyra3 80 SRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG-----D-FTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQ 153 (179) T ss_dssp TTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET-----T-EEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEE T ss_pred CHHHHHHHHCCCCCCEEHHHHCCCCCCEEEEEEC-----C-EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHEE T ss_conf 7999999863581310011103799837998408-----8-799518977764001570478874044345765505521 Q ss_pred EEECHHH Q ss_conf 9716899 Q gi|254780191|r 725 AITGQRA 731 (898) Q Consensus 725 avtG~~A 731 (898) .+.|..+ T Consensus 154 ri~G~a~ 160 (179) T d1nyra3 154 RIYGTAF 160 (179) T ss_dssp EEEEEEE T ss_pred EEHHHCC T ss_conf 1276423 No 6 >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Probab=99.66 E-value=3.6e-16 Score=141.92 Aligned_cols=137 Identities=20% Similarity=0.317 Sum_probs=114.5 Q ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH Q ss_conf 52013688999997521254444455300243000002476789999999999999898873045304661232221000 Q gi|254780191|r 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 (898) Q Consensus 584 ~~~HTatHlL~~alr~vLG~hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~g 663 (898) .-+||++|||++|+++ |.+++.+.++.+.++.+++||.+..+++++++..||..+|++|.+|.|+....++.++|++.. T Consensus 8 v~rhS~ahlLa~Av~~-l~p~~kl~~g~~~~~GfyyD~~~~~~~~~edl~~ie~~m~~ii~~~~~~~~~~~s~~~a~~~~ 86 (162) T d1tkea2 8 IIRHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETF 86 (162) T ss_dssp HHHHHHHHHHHHHHHH-HSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHH T ss_conf 9999899999999999-879969985243287699976305779877899999999999873277359995367888888 Q ss_pred HHHHH---------HHCCCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHEECCCCC-----CCC--CEEEEEEE Q ss_conf 35544---------315556248998447677855310156222588646011001101212-----688--28999971 Q gi|254780191|r 664 AAALL---------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-----RAG--IRRIEAIT 727 (898) Q Consensus 664 a~alf---------gekygd~VRVV~I~~~d~~~~S~ElCGGTHV~nTgeIG~fkIise~si-----~sG--vRRIeavt 727 (898) ...-+ ....+..|.+...+ ....+|.|+||.|||.|+.|||+|.++. +++ ..||.++| T Consensus 87 ~~~~~~~k~~~~~~~~~~~~~~~~y~~g------~~~dlc~Gphv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiyg~a 160 (162) T d1tkea2 87 ANRGESYKVSILDENIAHDDKPGLYFHE------EYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 160 (162) T ss_dssp HHTTCHHHHHHHHHHSCTTCCCEEEEET------TEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE T ss_pred HHHHCCHHHHEEECCCCCCCCCEEECCC------CEEEECCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEEE T ss_conf 8750012332000145556532011268------5476248886665763564899883051138898781007899997 No 7 >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Probab=99.44 E-value=1.4e-14 Score=129.41 Aligned_cols=60 Identities=33% Similarity=0.470 Sum_probs=53.3 Q ss_pred EEEEECCCCEEECCCCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEE Q ss_conf 99997375200036876566514540424898522456553389985104678755673388842 Q gi|254780191|r 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 (898) Q Consensus 511 ~~ivLd~T~FY~E~GGQ~~D~G~i~~~~~~~~V~dv~k~~~g~i~H~~~~~~g~l~~g~~V~~~V 575 (898) ..|+||+|||||||||||+|+|+|.+ ++|.||+|..+|.++|.+. ..+.+++|++|.++| T Consensus 28 ~~vild~T~FYpegGGQ~~D~G~i~~----~~V~~v~k~~~~~i~H~~~-~~~~l~vGd~V~~~I 87 (87) T d2e1ba1 28 NAILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHVVK-EPEKFKVGDEVELKI 87 (87) T ss_dssp SCCCBSCCCSCCCCTTCCCCCEEETT----EEEEEEECCTTCCCEEEES-CGGGCCSSSCEEEEE T ss_pred CEEEEECCCCCCCCCCCCCCEEEEEE----EEEEEEEEECCCEEEEEEC-CCCCCCCCCEEEEEC T ss_conf 99998065101678998888899905----8999999957999999946-789989999999989 No 8 >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Probab=97.88 E-value=6.8e-05 Score=53.59 Aligned_cols=173 Identities=23% Similarity=0.304 Sum_probs=102.8 Q ss_pred CCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCHHEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCEECCCCCCCH--- Q ss_conf 787899999999999789889116675667787100230143475540-0588799999851115432248987863--- Q gi|254780191|r 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDL--- 77 (898) Q Consensus 2 ~s~~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~llft~Agm~~fk~~-f~G~~~p~~~r~~~~QkCiR~ggkhnDl--- 77 (898) |+..+|-.+--+|+.++|+.++.++.+= +.|| .|-|. |+..--|.--+++=+|||.|- .|= T Consensus 1 m~fq~~i~~L~~~W~~~gC~i~qpyd~e---------vGAg--T~~p~T~lr~lgp~pw~~ayvqpsrRP----~DgRYg 65 (281) T d1j5wa_ 1 MYLQDVIMKLNDFWASKGCLLEQPYDME---------VGAG--TFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRYG 65 (281) T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC---------CSSG--GGSHHHHTGGGCSSCEEEEEEEEEECC----C----- T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCC---------CCCC--CCCHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCC T ss_conf 9689999999999987897897776554---------4646--687588874049987532343556688----654335 Q ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCHHHEEECCCC Q ss_conf 43464885001788854223147537889998998613341898123799971882899997566349998997535786 Q gi|254780191|r 78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN 157 (898) Q Consensus 78 d~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi~~~~i~~~~~~ 157 (898) +|--+ -.||.=|..+=-=|..+ |+=-|==..+.+|||+ .+|=+||- + T Consensus 66 ~NPNR-lq~y~QfQVi~KPsp~n------~q~lyL~SL~~igid~-------------------------~~hDIrfv-E 112 (281) T d1j5wa_ 66 ENPNR-LQRYFQYQVIIKPSPEN------SQELYLESLEYLGINL-------------------------KEHDIRFV-E 112 (281) T ss_dssp CCTTC-CSEEEEEEEEEESCCSS------HHHHHHHHHHHTTCCT-------------------------TTSCEEEE-E T ss_pred CCCCH-HHHHHHEEEEECCCCCC------HHHHHHHHHHHCCCCC-------------------------CCCCEEEE-E T ss_conf 89204-43455302350589412------8999999999819993-------------------------21425787-3 Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 66545799999877046788538556898887778898268960011234430478875657665310175799999998 Q gi|254780191|r 158 DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 (898) Q Consensus 158 dNfW~~g~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vl 237 (898) || |+.---|.-|--=||-.| ++||--.-.+| +-.| .++.--.+.--+||||||+.+ T Consensus 113 Dn-WEsPtlGAwGlGWEVwld------------------GMEItQFTYFQ---QvGg--~~c~pv~~EiTYGLERiaMyl 168 (281) T d1j5wa_ 113 DN-WESPTLGAWGVGWEVWLD------------------GMEITQFTYFQ---QIGG--ISLKDIPLEITYGLERIAMYL 168 (281) T ss_dssp EC-CEEGGGTEEEEEEEEEET------------------TEEEEEEEEEE---EBTT--BCCSSCCEEEEEEHHHHHHHH T ss_pred CC-CCCCCCCCEEEEEEEEEC------------------CEEEEEEEHHH---HHCC--CCCCCCCHHHHHHHHHHHHHH T ss_conf 16-768760210222478876------------------73665321635---6368--325653055443289999998 Q ss_pred CCCCCCCHH Q ss_conf 879853005 Q gi|254780191|r 238 QEKTNNYDI 246 (898) Q Consensus 238 qg~~s~ydt 246 (898) ||+.|+||+ T Consensus 169 Q~vd~v~Dl 177 (281) T d1j5wa_ 169 QGVDNVYEV 177 (281) T ss_dssp HTCSSGGGC T ss_pred HCCCHHEEE T ss_conf 486404032 No 9 >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Probab=91.73 E-value=0.37 Score=24.30 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=62.4 Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 27999957999789999999999754997899999538981799998677897267989999999988349999998101 Q gi|254780191|r 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 (898) Q Consensus 795 ~~i~~~~~~~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~GGgGGGkpd~ 874 (898) ..++..-++....-+--+|..+.++...+++++ + ++|.++- + ..+++..++++.....+ ++|||- .+ T Consensus 282 ~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~-~---~~kGS~R---s---~~g~~l~~~l~~~~~~l--~~~GGH-~~ 348 (385) T d1ir6a_ 282 KAIVLLDPEGHPGVMGIVASRILEATLRPVFLV-A---QGKGTVR---S---LAPISAVEALRSAEDLL--LRYGGH-KE 348 (385) T ss_dssp SSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEE-E---TTEEEEE---C---CSSCCHHHHHHTTGGGC--SEEEEC-SS T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE-E---CCEEEEE---C---CCCCCHHHHHHHHHCHH--HCCCCH-HH T ss_conf 159995377662022045899999729978999-6---6738776---8---99978999999874530--137991-67 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 145899987889999999998619 Q gi|254780191|r 875 AQSGGPNGNKADQAIAGVASFLKK 898 (898) Q Consensus 875 AQgGG~~~~~l~eal~~vk~~Lke 898 (898) |=|-.-..+++++..+.+.+++++ T Consensus 349 AaG~~i~~~~~~~F~~~l~~~~~~ 372 (385) T d1ir6a_ 349 AAGFAMDEALFPAFKARVEAYAAR 372 (385) T ss_dssp EEEEECCGGGHHHHHHHHHHHHHS T ss_pred CCEEEECHHHHHHHHHHHHHHHHH T ss_conf 046797498999999999999985 No 10 >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=91.34 E-value=0.13 Score=27.78 Aligned_cols=214 Identities=15% Similarity=0.160 Sum_probs=96.3 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCC-CC---CCCCHHEEECCCCCC------CCCCCCCCCC---------CCCCCCCCC Q ss_conf 8999999999997898891166756-67---787100230143475------5400588799---------999851115 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLI-PC---NDPTLMFTNSGMVPF------KNIFTGQEKP---------VYQAVTTVQ 65 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slv-p~---~d~~llft~Agm~~f------k~~f~G~~~p---------~~~r~~~~Q 65 (898) +.|-+.+-+||.++|-.-|. -|++ |. .++. ....+..+| +++||-+.+- ...|+-..= T Consensus 18 s~i~~~iR~ff~~~gf~EV~-tPil~~~~~~~~~~--~~~~~~~~~~~~~~~~~~yL~~SPel~lk~lla~g~~~Vf~I~ 94 (293) T d1nnha_ 18 TKILEYMTDFFVKEGFKWLL-PVIISPITDPLWPD--PAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94 (293) T ss_dssp HHHHHHHHHHHHHTTCEEEC-CCCEESCCCCCCSC--TTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEC T ss_conf 99999999999988999975-87345667777776--5567664653567896564466863647999972233210310 Q ss_pred CCEECCCCCCCHHHCC-CCCCCHHHHHHHH-HHHHCCC-----CHHHHHHHHHHHHHHHCC--CCH--HHEEEEECCCHH Q ss_conf 4322489878634346-4885001788854-2231475-----378899989986133418--981--237999718828 Q gi|254780191|r 66 KCVRAGGKHNDLDNVG-RTNRHHTFFEMLG-NFSFGGY-----FKERAIQLAWDLLTKEFD--LDQ--RRLYITVYDEDE 134 (898) Q Consensus 66 kCiR~ggkhnDld~VG-~t~rH~TfFEMlG-n~SfgdY-----fK~eai~~awe~lt~~~~--l~~--~~l~vtv~~~D~ 134 (898) ||.|. |+.. .|.||+.=|-||= =.+|.|| .-++.|...++-+.+..+ +|. .--.+|+ . T Consensus 95 ~~FR~-------E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 163 (293) T d1nnha_ 95 PNIRL-------ESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEY----S 163 (293) T ss_dssp EEECC-------CCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEEH----H T ss_pred HHHHC-------CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH----H T ss_conf 23304-------755677775615665111123323078899999999999999999871745666784332338----7 Q ss_pred HHHHHHHHHCCCCHH---H----EEECCCCCCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHH Q ss_conf 999975663499989---9----75357866654579999-987704678853855689888777889826896001123 Q gi|254780191|r 135 EAFKLWKKISGLSAD---K----IIRITTNDNFWSMAETG-PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206 (898) Q Consensus 135 e~~~iW~~~~gi~~~---~----i~~~~~~dNfW~~g~~G-pcGPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFm 206 (898) |+.+.|. .... . +.......-|+.+.+.| +..+..|+++ .|.+..+| |.|+++-. . T Consensus 164 eal~~~g----~d~~~~~~~~~p~~~~~~p~~f~~~~~~~~~~~~~~~l~~-~g~Elang----------~~el~d~~-~ 227 (293) T d1nnha_ 164 EVLEEFG----SDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPY-GYGEVASG----------GEREWEYE-K 227 (293) T ss_dssp HHHHHTS----SHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETT-TTEEEEEE----------EEBCCCHH-H T ss_pred HHHCCCC----CCCCCCCCCCCCEECCCCCHHHCCCCCCCCCCCCEEEECC-CCCCCCCC----------CCCCCCHH-H T ss_conf 6532367----6520011222113203421021024666434541357404-57420552----------10106799-9 Q ss_pred HHHCC-CCCC-CC------------CCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHH Q ss_conf 44304-7887-56------------57665310175799999998879853005769 Q gi|254780191|r 207 QFEQQ-NKQE-RF------------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249 (898) Q Consensus 207 q~~~~-~~g~-~~------------~Lp~~~IDTGmGLERl~~vlqg~~s~ydtD~f 249 (898) |-.|- ..|. -. .|| ++=--|+|+|||++++.|.++.=|+=.| T Consensus 228 ~~~r~~~~gl~~e~~~~yl~a~~~G~mP-P~~G~glGiDRL~m~l~g~~~Irdv~~F 283 (293) T d1nnha_ 228 IVAKIRKAGLNEDSFRPYLEIAKAGKLK-PSAGAGIGVERLVRFIVGAKHIAEVQPF 283 (293) T ss_dssp HHHHHHHTTCCGGGGHHHHHHHHTTCCC-CEEEEEEEHHHHHHHHHTCSSGGGGCSS T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCCEEEEHHHHHHHHHHCCCCHHHEECC T ss_conf 9999998599989999999999809999-9886766599999999389828851147 No 11 >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Probab=90.91 E-value=0.027 Score=33.20 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=36.4 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEH------HHHHHHCCCC-CCCCCCC--CCCCCCCCCHHHHHHHHCCC Q ss_conf 7704678853855689888777889826896001------1234430478-8756576--65310175799999998879 Q gi|254780191|r 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL------VFMQFEQQNK-QERFILP--KMSIDTGMGLERMATVLQEK 240 (898) Q Consensus 170 GPcsEi~~d~g~~~~~~~~~~~~~~~r~lEiwNl------VFmq~~~~~~-g~~~~Lp--~~~IDTGmGLERl~~vlqg~ 240 (898) =|+.||+.-+. .+.++|||... |+-.+..+.+ ..+-|.- -...--||||||||+++-|. T Consensus 178 ePS~Ev~v~~~------------~~~~WlEilG~Gmv~p~vL~~~gi~~~~~g~~~~~~~~~g~AfGlGlERlAMl~~gI 245 (266) T d1jjca_ 178 EPGAQFAVWWP------------EGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGI 245 (266) T ss_dssp EEEEEEEEEEG------------GGTEEEEEEEEEEECHHHHHHHHHHHHTTTCCCCCTTCEEEEEEEEHHHHHHHHHTC T ss_pred CCCCCEEEEEE------------ECCCCCEEEEECCCCHHHHHHCCCCHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCC T ss_conf 68766688986------------057766687404568899986388656516885456776999863399999998299 Q ss_pred CCCC Q ss_conf 8530 Q gi|254780191|r 241 TNNY 244 (898) Q Consensus 241 ~s~y 244 (898) +..= T Consensus 246 ~DIR 249 (266) T d1jjca_ 246 PDIR 249 (266) T ss_dssp SCGG T ss_pred CHHH T ss_conf 8588 No 12 >d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]} Probab=76.53 E-value=1.4 Score=19.86 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 8999899861334189812379997188 Q gi|254780191|r 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 105 eai~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) +...--.+||.+.||+|++|+|++++.- T Consensus 75 ~~s~~i~~~l~~~LgI~~~RiyI~f~~~ 102 (117) T d1dpta_ 75 SHSAHFFEFLTKELALGQDRILIRFFPL 102 (117) T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 9999999999987297967599999978 No 13 >d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=76.04 E-value=1.4 Score=19.69 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHEEEEECC Q ss_conf 899989986133418981237999718 Q gi|254780191|r 105 RAIQLAWDLLTKEFDLDQRRLYITVYD 131 (898) Q Consensus 105 eai~~awe~lt~~~~l~~~~l~vtv~~ 131 (898) +...--.+||.+.||+|++|+|++++. T Consensus 75 ~~s~~i~~~l~~~LgI~~~Riyi~f~d 101 (115) T d1uiza_ 75 SYTKLLCDILTKQLNIPANRVYINYYD 101 (115) T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 999999999998749995649999997 No 14 >d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]} Probab=74.30 E-value=1.7 Score=19.13 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=24.5 Q ss_pred HHCCCCHHH---HHHHHHHHHHHHCCCCHHHEEEEECC Q ss_conf 314753788---99989986133418981237999718 Q gi|254780191|r 97 SFGGYFKER---AIQLAWDLLTKEFDLDQRRLYITVYD 131 (898) Q Consensus 97 SfgdYfK~e---ai~~awe~lt~~~~l~~~~l~vtv~~ 131 (898) |+|..=.++ -..--.+||.+.||+|++|+|++++. T Consensus 63 siG~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~f~d 100 (114) T d2gdga1 63 SIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYD 100 (114) T ss_dssp ESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 80689978889999999999999839795659999997 No 15 >d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]} Probab=73.70 E-value=1.8 Score=18.95 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHCCCCHHHEEEEECCC Q ss_conf 99899861334189812379997188 Q gi|254780191|r 107 IQLAWDLLTKEFDLDQRRLYITVYDE 132 (898) Q Consensus 107 i~~awe~lt~~~~l~~~~l~vtv~~~ 132 (898) ..--.+||.+.||+|++|+|++++.- T Consensus 76 s~~i~~~l~~~LgI~~~RiyI~f~d~ 101 (113) T d1hfoa_ 76 SAKLFDHLNTKLGIPKNRMYIHFVNL 101 (113) T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEC T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 99999999997197936499999978 No 16 >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=65.17 E-value=0.97 Score=21.05 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.6 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHH Q ss_conf 5310175799999998879853005769 Q gi|254780191|r 222 MSIDTGMGLERMATVLQEKTNNYDIDLF 249 (898) Q Consensus 222 ~~IDTGmGLERl~~vlqg~~s~ydtD~f 249 (898) ++=--|||+|||++++-|.+|.=|+=.| T Consensus 317 P~~G~glGiDRL~m~l~~~~~Irdvi~F 344 (353) T d1eova2 317 PHAGGGIGLERVVMFYLDLKNIRRASLF 344 (353) T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS T ss_pred CCCEEEEHHHHHHHHHHCCCCHHHEECC T ss_conf 9704655899999998089928844678 No 17 >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Probab=65.14 E-value=0.94 Score=21.16 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=43.6 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCCCCC--HHEEECCCCCC-CCCCCCCCCCC--------CCCCCCCCCCEECCCC Q ss_conf 8999999999997898891166756677871--00230143475-54005887999--------9985111543224898 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPT--LMFTNSGMVPF-KNIFTGQEKPV--------YQAVTTVQKCVRAGGK 73 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp~~d~~--llft~Agm~~f-k~~f~G~~~p~--------~~r~~~~QkCiR~ggk 73 (898) +.|-+..-+||.++|-.-|..-.|++...+. =.|.. .-| +++||-+.+-- ..++=..-||.|. T Consensus 19 s~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~---~~~~~~~~L~~Spel~k~ll~~g~~~if~i~~~FR~--- 92 (304) T d1n9wa2 19 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV---DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM--- 92 (304) T ss_dssp HHHHHHHHHHHHHTTCEECCCC-------------------------------CHHHHHHHHHHHSEEEEEEEC------ T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECC---CCCCCCHHCCCCHHHHHHHHHCCCCCCEEEHHHCCC--- T ss_conf 99999999999888999987986478888997850787---655530101453888888752133542101433124--- Q ss_pred CCCHHHCCCCCCCHHHHHHHH-HHHH Q ss_conf 786343464885001788854-2231 Q gi|254780191|r 74 HNDLDNVGRTNRHHTFFEMLG-NFSF 98 (898) Q Consensus 74 hnDld~VG~t~rH~TfFEMlG-n~Sf 98 (898) ++ +.+.||+..|-||= =++| T Consensus 93 -ee----~~~~rh~~EF~~le~~~~~ 113 (304) T d1n9wa2 93 -EE----HHTSRHLNEYLSLDVEMGF 113 (304) T ss_dssp ---------------CCEEEEEEEES T ss_pred -CC----CCCCCCCCHHHHHHHHHHH T ss_conf -53----5554465178999998742 No 18 >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Probab=65.14 E-value=0.72 Score=22.08 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=54.5 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCC--CCCCCCCHHEEECCCCCCC-CCCCCCCCC---------CCCCCCCCCCCEECCC Q ss_conf 899999999999789889116675--6677871002301434755-400588799---------9998511154322489 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSL--IPCNDPTLMFTNSGMVPFK-NIFTGQEKP---------VYQAVTTVQKCVRAGG 72 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~sl--vp~~d~~llft~Agm~~fk-~~f~G~~~p---------~~~r~~~~QkCiR~gg 72 (898) ++|-+.+-+||.++|-.-|..--+ .|-....-.|+... .-|. +.+|-+.+- -..|+-..-||.|. T Consensus 27 s~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~-~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~-- 103 (342) T d1e1oa2 27 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN-- 103 (342) T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEE-TTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC-- T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-- T ss_conf 9999999999988889999898764327987886423146-6777512002326799898766224621342000245-- Q ss_pred CCCCHHHCCCCCCCHHHHHHHH-HHHHCCCC-----HHHHHHHHHHHH Q ss_conf 8786343464885001788854-22314753-----788999899861 Q gi|254780191|r 73 KHNDLDNVGRTNRHHTFFEMLG-NFSFGGYF-----KERAIQLAWDLL 114 (898) Q Consensus 73 khnDld~VG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awe~l 114 (898) . + .+.||++=|-||= =.||-||- -++-+...|.-+ T Consensus 104 --E---~--~~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~ 144 (342) T d1e1oa2 104 --E---G--ISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEV 144 (342) T ss_dssp --C---C--CCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH T ss_pred --C---C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf --5---4--311110788878899875116667776568899999999 No 19 >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Probab=63.34 E-value=1.3 Score=20.11 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=7.2 Q ss_pred HHHHHHHHHHHHCCCEEC Q ss_conf 999999999997898891 Q gi|254780191|r 6 SIRTTFLEFFQKNGHELL 23 (898) Q Consensus 6 eiR~~fl~fF~~~~H~~~ 23 (898) +|+.++.+.|+++|...| T Consensus 20 ~i~~~l~~~f~~~Gy~~I 37 (318) T d1z7ma1 20 QIEGRLRKLFSLKNYQEV 37 (318) T ss_dssp HHHHHHHHHHHHTTCEEC T ss_pred HHHHHHHHHHHHCCCEEE T ss_conf 999999999998699798 No 20 >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Probab=61.11 E-value=1.3 Score=20.09 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=45.9 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCC--CCCCHHEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCEECCCC Q ss_conf 899999999999789889116675667--7871002301434755400588799---------99985111543224898 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIPC--NDPTLMFTNSGMVPFKNIFTGQEKP---------VYQAVTTVQKCVRAGGK 73 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp~--~d~~llft~Agm~~fk~~f~G~~~p---------~~~r~~~~QkCiR~ggk 73 (898) +.|-+.+-+||.++|-.-|..-.|++. ....-.|+... .=+++||-+.+- -..++-.-=||.|.. T Consensus 38 s~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~--~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e-- 113 (335) T d1b8aa2 38 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKY--FEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAE-- 113 (335) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEE--TTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC-- T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC-- T ss_conf 9999999999998899998798657657721332012112--234421236857877777764066687833023522-- Q ss_pred CCCHHHCCCCCCCHHHHHHH-HHHHHC-CC Q ss_conf 78634346488500178885-422314-75 Q gi|254780191|r 74 HNDLDNVGRTNRHHTFFEML-GNFSFG-GY 101 (898) Q Consensus 74 hnDld~VG~t~rH~TfFEMl-Gn~Sfg-dY 101 (898) ..| +.||+..|-|| .-..+. || T Consensus 114 -----~~~-~~rh~~Ef~~le~~~~~~~~~ 137 (335) T d1b8aa2 114 -----EHN-TTRHLNEAWSIDSEMAFIEDE 137 (335) T ss_dssp -----SSC-CSSCCSEEEEEEEEEESCSSH T ss_pred -----CCC-CCCCCHHHHHHHHHHHHHHHH T ss_conf -----245-431025887666788888765 No 21 >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Probab=52.37 E-value=4.9 Score=15.56 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=52.9 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCC--CCCHHEEECCCCCC-CCCCCCCCC---------CCCCCCCCCCCCEECCC Q ss_conf 8999999999997898891166756677--87100230143475-540058879---------99998511154322489 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIPCN--DPTLMFTNSGMVPF-KNIFTGQEK---------PVYQAVTTVQKCVRAGG 72 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp~~--d~~llft~Agm~~f-k~~f~G~~~---------p~~~r~~~~QkCiR~gg 72 (898) ++|-+.+-+||.++|-.-|..--|.+.. +....|+.. .+.| ++++|-+.+ .-..|+-..-||.|++ T Consensus 44 s~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~-~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE- 121 (356) T d1l0wa3 44 HRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPY-RHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDE- 121 (356) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC-TTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCC- T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHH-HCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC- T ss_conf 999999999998889899989812467776443200222-113201117772856777775232368679982123522- Q ss_pred CCCCHHHCCCCCCCHHHHHHHH-HHHHCCCCHHHHHHHHHHH Q ss_conf 8786343464885001788854-2231475378899989986 Q gi|254780191|r 73 KHNDLDNVGRTNRHHTFFEMLG-NFSFGGYFKERAIQLAWDL 113 (898) Q Consensus 73 khnDld~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~ 113 (898) ++| .|||.=|-||- -.+|-|| ++.+...=++ T Consensus 122 ------~~~--t~H~~EFtmLE~e~~~~~~--~~~m~~~E~l 153 (356) T d1l0wa3 122 ------DLR--ADRQPDFTQLDLEMSFVEV--EDVLELNERL 153 (356) T ss_dssp ------CCC--SSCCSEEEEEEEEEESCCH--HHHHHHHHHH T ss_pred ------CCC--CCCHHHHHHHHHHHHHHHH--HHHHHHHHHH T ss_conf ------268--7540456688776667888--7899999999 No 22 >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} Probab=48.22 E-value=4.7 Score=15.70 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=16.3 Q ss_pred HHHHHHHHCCCCHHHEEECCCCCCCCCCC Q ss_conf 99975663499989975357866654579 Q gi|254780191|r 136 AFKLWKKISGLSADKIIRITTNDNFWSMA 164 (898) Q Consensus 136 ~~~iW~~~~gi~~~~i~~~~~~dNfW~~g 164 (898) -.+||.+..|++ .++..+||+++| T Consensus 12 l~~i~~~vL~~~-----~i~~~~~f~~lG 35 (76) T d2gdwa1 12 LAEIWERVLGVS-----GIGILDNFFQIG 35 (76) T ss_dssp HHHHHHHHTTSS-----CCCTTTTSSTTT T ss_pred HHHHHHHHCCCC-----CCCCCCCHHHCC T ss_conf 999999993999-----879998977718 No 23 >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Probab=45.94 E-value=6 Score=14.85 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=60.5 Q ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCC--CCCHHEEECCCCCCCCCCCCCCC---------CCCCCCCCCCCCEECCCC Q ss_conf 8999999999997898891166756677--87100230143475540058879---------999985111543224898 Q gi|254780191|r 5 SSIRTTFLEFFQKNGHELLPSSSLIPCN--DPTLMFTNSGMVPFKNIFTGQEK---------PVYQAVTTVQKCVRAGGK 73 (898) Q Consensus 5 ~eiR~~fl~fF~~~~H~~~~s~slvp~~--d~~llft~Agm~~fk~~f~G~~~---------p~~~r~~~~QkCiR~ggk 73 (898) ++|-+.+-+||.++|-.-|..--|++.. +....|+..--..=++++|-+.+ ....|+-..-||.|.+ T Consensus 36 s~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E-- 113 (346) T d1c0aa3 36 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDE-- 113 (346) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCC-- T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCC-- T ss_conf 999999999999889899879854777876454442121137996306771879999998634888548971240212-- Q ss_pred CCCHHHCCCCCCCHHHHHHHHH-HHHCCCC--HHHHHHHHHHHHHHHCCCCHHHEEE Q ss_conf 7863434648850017888542-2314753--7889998998613341898123799 Q gi|254780191|r 74 HNDLDNVGRTNRHHTFFEMLGN-FSFGGYF--KERAIQLAWDLLTKEFDLDQRRLYI 127 (898) Q Consensus 74 hnDld~VG~t~rH~TfFEMlGn-~SfgdYf--K~eai~~awe~lt~~~~l~~~~l~v 127 (898) . .++|||+=|-||-= .+|.||. .+.+-.+--.+..++.+++....-. T Consensus 114 -----~--~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~~~~~~~ 163 (346) T d1c0aa3 114 -----D--LRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPV 163 (346) T ss_dssp -----C--CBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCE T ss_pred -----C--CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf -----3--6861356765631343455376758999999999999972776776541 No 24 >d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=44.10 E-value=1.7 Score=19.15 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC Q ss_conf 8899998748989999998999999998611546424574379985245888 Q gi|254780191|r 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 (898) Q Consensus 346 ~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP 397 (898) .|.++|..-+.+=...|..=...|+.+.+.+-++++|+|++.-.|+..||+| T Consensus 145 ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~il~~~~~~ 196 (202) T d2di4a1 145 EVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIE 196 (202) T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC T ss_conf 9999999999999999998099999999999981806799999999877999 No 25 >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=43.39 E-value=6.5 Score=14.57 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=12.5 Q ss_pred CCEEEEEEEE-CCCEEEECCCCCEEEEEEC Q ss_conf 5348999974-7813200047976999973 Q gi|254780191|r 488 VSSIVKAIVQ-QGEIVEEAVSGQKVEVVFD 516 (898) Q Consensus 488 ~~s~v~~i~~-~~~~v~~~~~g~~~~ivLd 516 (898) ..++|..|.. ..+.++++.+|+.+.+-|. T Consensus 47 ~~~~Vk~I~~~~~~~v~~a~aGd~V~l~l~ 76 (95) T d1r5ba1 47 QTLEVTAIYDEADEEISSSICGDQVRLRVR 76 (95) T ss_dssp EEEEEEEEECTTCCEESEEETTCEEEEEEE T ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEEC T ss_conf 889999999974666567289987999982 No 26 >d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]} Probab=39.64 E-value=7.4 Score=14.15 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=35.8 Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECHHHHCCCCHHHHHHHHHHHHC--CCCCCCCCH Q ss_conf 978999999999975499789999953898179999867789726798999999998834--999999810 Q gi|254780191|r 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPH 873 (898) Q Consensus 805 d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs~~~~~~~~A~~lik~ia~~l~--GGgGGGkpd 873 (898) .+..++..+|.++...+++-+++-.+..+..+.+.+-..+... +.++.+.+...+. -||.|.+|. T Consensus 39 ~~~~lq~~Idgi~~~~~~grvlIRpSGTEp~iRi~vEa~~~~~----~~~i~~~i~~lv~~~~~g~~~~~~ 105 (112) T d1wjwa_ 39 TPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQES----ADRLAYEVSLLVFQLAGGIGERPQ 105 (112) T ss_dssp SSTTHHHHHHHHHHHSSSEEEEEECSSSSSSEEEEEEESSHHH----HHHHHHHHHHHHHHHTCCCSSCCC T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHH----HHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 8598999999988405865899986899744899986199999----999999999999999577679999 No 27 >d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=38.83 E-value=7.6 Score=14.06 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=24.2 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8999987665077443588899999999976 Q gi|254780191|r 398 LDIMQDILCARGLAGIDIISFNQALEEQRSR 428 (898) Q Consensus 398 ~dlt~eia~e~gi~~vD~~~f~~~m~~qk~~ 428 (898) +||+..+|+|.|.+ ++-+=|...|+.-|.. T Consensus 4 ldlvrkvaeeng~s-~ns~iy~~vmes~kke 33 (36) T d1u9pa1 4 LDLVRKVAEENGRS-VNSEIYQRVMESFKKE 33 (36) T ss_dssp HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCC-HHHHHHHHHHHHHHHC T ss_conf 99999999982861-4199999999998873 No 28 >d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Probab=38.22 E-value=2.1 Score=18.37 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=12.9 Q ss_pred CCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf 556733888421255677752013688999997521 Q gi|254780191|r 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 (898) Q Consensus 565 l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~v 600 (898) +..|+.+-|+|.- |.+.+-..|...+.-+ T Consensus 79 lRkg~piG~kVTL-------Rg~~m~~FL~rli~iv 107 (179) T d1iq4a_ 79 LRQGMPIGAKVTL-------RGERMYEFLDKLISVS 107 (179) T ss_dssp CCTTCEEEEEEEE-------CHHHHHHHHHHHHHTT T ss_pred CCCCCEEEEEEEE-------CCCHHHHHHHHHHHHC T ss_conf 1489616887532-------1313889999999840 No 29 >d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=37.23 E-value=7.3 Score=14.17 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHH Q ss_conf 48989999998999999998611546-4245743799852458888999987665 Q gi|254780191|r 354 EDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCA 407 (898) Q Consensus 354 EE~~F~~TL~~G~~~l~~~i~~~~~~-~~lsg~~af~LyDTyGfP~dlt~eia~e 407 (898) =|++|.+. ..--.++....++++.. .-+--..+|.||+.||=+.|--+....+ T Consensus 9 Ceery~K~-K~V~sIlrhvAekl~~~lEeLy~~iaWpL~~kyG~aydaFk~av~d 62 (87) T d1q46a1 9 CEEKYQKS-KTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIID 62 (87) T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHC T ss_pred HHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCC T ss_conf 99999998-7999999999999799899999998100485346699999998449 No 30 >d1p9ba_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Probab=36.38 E-value=1.4 Score=19.87 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=57.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 24899999898999987403333444641---257788999999999848743310456899999864555555764678 Q gi|254780191|r 270 VNHRVIVDHLRSSSFLIADGILPANEGRG---YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 (898) Q Consensus 270 ~~~rvIaDH~Ra~~f~I~DGv~PsN~GrG---YvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~ 346 (898) +.+-+..|-+|-..=. ..+.-=+-.||| ...+++.||++|.+.++.. ..|.+.+..+.+.+...|+...-..+. T Consensus 104 ~P~H~~lD~~~E~~r~-~g~~~iGTTgrGIGPaY~dK~~R~gir~~Dl~~~--~~l~~kl~~l~~~~~~~~~~~~~~~~~ 180 (424) T d1p9ba_ 104 FDIHQIIDSIQETKKL-KEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNF--ENFKNMYSKLIDHLMDLYNITEYDKEK 180 (424) T ss_dssp CHHHHHHHHHHHHHHH-HTTCCCCCCSSSHHHHHHHHHTTCCCBGGGGGSH--HHHHHHHHHHHHHHHHHTTCCCCCHHH T ss_pred CCHHHHHHHHHHHHHC-CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 8603667787654420-4676635788866065554331023332111364--659999999987553320000001467 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH Q ss_conf 89999874898999999899999999861154642457437998524588889 Q gi|254780191|r 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 (898) Q Consensus 347 I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsg~~af~LyDTyGfP~d 399 (898) +...+..-.++...-+..-...++..+++ .++=.+-|.+.+.|---||+=|= T Consensus 181 ~~~~~~~~~~~l~~~i~d~~~~l~~~l~~-gk~ILfEGAQG~lLDiD~GtYP~ 232 (424) T d1p9ba_ 181 ELNLFYNYHIKLRDRIVDVISFMNTNLEN-NKKVLIEGANAAMLDIDFGTYPY 232 (424) T ss_dssp HHHHHHHHHHHHGGGEECHHHHHHHHHHT-TCCEEEECCSCGGGCTTTSSTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCEEEECCCCCCCC T ss_conf 99999999998745556479999999971-47467740130144110474455 No 31 >d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse (Mus musculus) [TaxId: 10090]} Probab=36.19 E-value=8.2 Score=13.77 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=56.9 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCCCC-C--------CCCHHHHHHH Q ss_conf 43047887565766531017579999999887985300576999999999730--67854-3--------3502489999 Q gi|254780191|r 208 FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYE-G--------NNIVNHRVIV 276 (898) Q Consensus 208 ~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~s~ydtD~f~pii~~i~~~~--g~~y~-~--------~~~~~~rvIa 276 (898) |...+.|.+.|=....|--|| +-|-. -|+++++.+. |+... + .-.+.|-+.. T Consensus 55 lhllPSGil~~~~~~vIG~Gv--------------Vidp~---~L~~Ei~~L~~~gv~~~~~rL~Is~rAhli~P~H~~l 117 (430) T d1iwea_ 55 FHLLPSGIINTKAVSFIGNGV--------------VIHLP---GLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAV 117 (430) T ss_dssp ESSSCGGGGCTTSEEEECTTB--------------EECHH---HHHHHHHHHHTTTCCSGGGSEEEETTCEECCHHHHHH T ss_pred EECCCCEECCCCCCEEECCEE--------------EECHH---HHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHH T ss_conf 953783750599728989908--------------98299---9999999987305655421023125421368624664 Q ss_pred HHHHHHHH-HHHHCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 98989999-874033334446412---5778899999999984874331045689999986455555 Q gi|254780191|r 277 DHLRSSSF-LIADGILPANEGRGY---VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 (898) Q Consensus 277 DH~Ra~~f-~I~DGv~PsN~GrGY---vlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~m~~~ype 339 (898) |.+|-..- +-.+. -=+-.|||- ..+++.||++|.+.++.- ...|.+......+.....|+. T Consensus 118 D~~~E~~~~~~~~~-~IGTTgrGIGPaY~DK~~R~gIR~~DL~~~-~~~l~~~~~~~~~~~~~~~~~ 182 (430) T d1iwea_ 118 DGLQEVQRQAQEGK-NIGTTKKGIGPTYSSKAARTGLRICDLLSD-FDEFSARFKNLAHQHQSMFPT 182 (430) T ss_dssp HHHHHHHHHHHSSC-CCCCCSSSHHHHHHHHHHTCSCBHHHHTSC-HHHHHHHHHHHHHHHHHSCTT T ss_pred HHHHHHHCCCCCCC-CCCCCCCCCCCCHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCC T ss_conf 03433210223453-213344670610211112142243330004-889999999999988764043 No 32 >d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]} Probab=35.69 E-value=8.4 Score=13.71 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.1 Q ss_pred CCCCHHHHHHHHHHCCCC Q ss_conf 588889999876650774 Q gi|254780191|r 394 HGLPLDIMQDILCARGLA 411 (898) Q Consensus 394 yGfP~dlt~eia~e~gi~ 411 (898) .|||.||+.++++.-|.. T Consensus 6 ~gFP~eli~~~~~~~g~~ 23 (119) T d2i09a2 6 NGFPEEIISKIEKFSGRK 23 (119) T ss_dssp TCCCHHHHHHHHHHHSCC T ss_pred CCCCHHHHHHHHHHHCCC T ss_conf 889999999999986988 No 33 >d2giab1 d.18.1.4 (B:28-173) GBP21 {Trypanosoma brucei [TaxId: 5691]} Probab=34.89 E-value=8.6 Score=13.62 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=31.7 Q ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCC Q ss_conf 65533899851046787556733888421255677752013688999997521254 Q gi|254780191|r 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 (898) Q Consensus 548 k~~~g~i~H~~~~~~g~l~~g~~V~~~VD~~rR~~~~~~HTatHlL~~alr~vLG~ 603 (898) |...|+++| |.+....- ...-||.-|++..-.-|-.|.|.+||-+-+|. T Consensus 93 k~~~gy~l~-gqvhr~~s------q~~e~wsv~f~n~favtlehflesaltesfgf 141 (146) T d2giab1 93 KSAQGYHLH-GKVHRVAS------QRMEDWSVKFDNHFAVTLEHFLESALDESFGF 141 (146) T ss_dssp ECSSEEEEE-EEECBTTC------CCCEEEEEEEETHHHHHHHHHHHHHHHHTTCH T ss_pred ECCCCEEEE-EEEEECHH------HHHHHHHEEECCCHHHHHHHHHHHHHHHHCCH T ss_conf 067621886-36851555------54002304422211333999998766421251 No 34 >d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=34.01 E-value=3.3 Score=16.84 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=30.0 Q ss_pred CCCCCHHEEECCC-CCCCCCCCCCCCCCCCCCCCCCC------C--EE--------CCCCCCCHHHCCCCCCCHHH Q ss_conf 7787100230143-47554005887999998511154------3--22--------48987863434648850017 Q gi|254780191|r 31 CNDPTLMFTNSGM-VPFKNIFTGQEKPVYQAVTTVQK------C--VR--------AGGKHNDLDNVGRTNRHHTF 89 (898) Q Consensus 31 ~~d~~llft~Agm-~~fk~~f~G~~~p~~~r~~~~Qk------C--iR--------~ggkhnDld~VG~t~rH~Tf 89 (898) ||+. |-.. .+||-++||.++ ... +++... | +| --+|||||--||+++|--+| T Consensus 29 HWRs-----NKtLp~~Fkvv~L~~v~-dGt-~vti~agNden~~aelrn~ta~mknqva~fndLrFvgRSgrgKsF 97 (124) T d1eaqa_ 29 HWRS-----NKTLPIAFKVVALGDVP-DGT-LVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSF 97 (124) T ss_dssp EEET-----TCCCSSCCEEEESSCCC-TTC-EEEEEEEETTEEEECEESCEEEEETTEEECSSCEECSCCCTTCCB T ss_pred HHCC-----CCCCCCCEEEEEEEECC-CCC-EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEE T ss_conf 3124-----77567526899964227-982-999980477661165555588876411421661771467887248 No 35 >d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]} Probab=32.63 E-value=9.3 Score=13.35 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=9.7 Q ss_pred HHHHHHCCCCHHHEEEEEC Q ss_conf 8613341898123799971 Q gi|254780191|r 112 DLLTKEFDLDQRRLYITVY 130 (898) Q Consensus 112 e~lt~~~~l~~~~l~vtv~ 130 (898) +.|.+.+|+|++++||++. T Consensus 84 ~~l~~~lgi~~~~v~I~i~ 102 (120) T d1mwwa_ 84 SELEYKLGIRAHDVEITIK 102 (120) T ss_dssp HHHHHHHCCCGGGEEEEEE T ss_pred HHHHHHHCCCCCEEEEEEE T ss_conf 9999985959074999999 No 36 >d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Probab=30.74 E-value=2.2 Score=18.20 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=8.1 Q ss_pred CCHHHHHHHHHHHCCCC Q ss_conf 88289999756634999 Q gi|254780191|r 131 DEDEEAFKLWKKISGLS 147 (898) Q Consensus 131 ~~D~e~~~iW~~~~gi~ 147 (898) ..|+||+.+|..+ |+| T Consensus 159 ~~~~e~~~Ll~~~-g~P 174 (177) T d2zjrd1 159 KTDEEARALLQSM-GLP 174 (177) T ss_dssp SSHHHHHHHHHHT-CCC T ss_pred CCHHHHHHHHHHC-CCC T ss_conf 9989999999984-998 No 37 >d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]} Probab=29.64 E-value=8 Score=13.88 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=12.9 Q ss_pred HHCCCHHHHHHHHHHHCCC Q ss_conf 5201368899999752125 Q gi|254780191|r 584 SINHSATHLLHHALSTILG 602 (898) Q Consensus 584 ~~~HTatHlL~~alr~vLG 602 (898) .+.|-.+-|-..-+-.+|| T Consensus 72 ~qgy~~~RIaaHE~GH~LG 90 (132) T d1c7ka_ 72 NQQYDSTRVTAHETGHVLG 90 (132) T ss_dssp HHHSCHHHHHHHHHHHHHT T ss_pred HCCCCCHHEEEEHHCCCCC T ss_conf 5578731000002122247 No 38 >d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Probab=29.43 E-value=7.1 Score=14.28 Aligned_cols=40 Identities=25% Similarity=0.574 Sum_probs=27.9 Q ss_pred CHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCC Q ss_conf 8289999756634999899753578666545799999877 Q gi|254780191|r 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 (898) Q Consensus 132 ~D~e~~~iW~~~~gi~~~~i~~~~~~dNfW~~g~~GpcGP 171 (898) +|--+++-|+..-.+|.-+-++=..-.-.|--|++||--| T Consensus 5 ~~ys~F~~WLqCY~~pgM~sL~D~~GRTIWF~GdpGPlaP 44 (44) T d1tdha3 5 EDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAP 44 (44) T ss_dssp HHHHHHHHHCSSTTCTTCEEEECTTSCEEEESSCCCTTCC T ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCC T ss_conf 6899999999998577525444068977985389888897 No 39 >d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40 [TaxId: 10633]} Probab=28.85 E-value=7.2 Score=14.24 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=21.7 Q ss_pred HHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHCCC Q ss_conf 89986133418981237999718828999975663499 Q gi|254780191|r 109 LAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGL 146 (898) Q Consensus 109 ~awe~lt~~~~l~~~~l~vtv~~~D~e~~~iW~~~~gi 146 (898) |.++-.++|+|+|+ ..|++..|.++||. T Consensus 49 yCy~Cy~~WFG~~~----------t~~~f~~W~~iI~~ 76 (80) T d2pkgc1 49 YCFDCFRMWFGLDL----------CEGTLLLWCDIIGQ 76 (80) T ss_dssp CCHHHHHHHHTCCS----------SHHHHHHHHHHHHH T ss_pred EHHHHHHHHHCCCC----------HHHHHHHHHHHHHC T ss_conf 58998999928985----------18999999999845 No 40 >d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]} Probab=27.38 E-value=11 Score=12.71 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=31.1 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3333444641257788999999999848743--------------31045689999986455555576 Q gi|254780191|r 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTE--------------PLMMHLLPALCTEMGSAYPELIQ 342 (898) Q Consensus 289 Gv~PsN~GrGYvlRrilRRa~r~~~~lg~~~--------------~fl~~lv~~v~~~m~~~ypeL~~ 342 (898) |+.|+.--+|. +.|||.++-....+|+=+ .+|..+...+...+...+|+|.+ T Consensus 83 G~~P~h~~~~S--g~iiR~~LQqLE~~glVek~~~~GR~lT~~G~~~LD~iA~~v~~~~~~~~P~L~k 148 (149) T d2v7fa1 83 GHAPERFYKAG--GSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEIIPELKK 148 (149) T ss_dssp CCCTTSCCCHH--HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHHHHHHHHHHSCC T ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHCCCEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99998767776--3899999999986888667699994778889999999999999999985835356 No 41 >d2arha1 d.108.1.9 (A:1-196) Hypothetical protein Aq_1966 {Aquifex aeolicus [TaxId: 63363]} Probab=25.53 E-value=12 Score=12.48 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=9.2 Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999716899999999999999999983 Q gi|254780191|r 722 RIEAITGQRARSHLMGQDEKLKSLASFL 749 (898) Q Consensus 722 RIeavtG~~A~~~~~~~~~~l~~la~~L 749 (898) .|.|.--..-.+-.+....+..++.+.+ T Consensus 149 KLQA~KPl~~~~~~R~l~~lr~d~~~fl 176 (196) T d2arha1 149 KIQAEKPKTEEAKKRHLENLKKEFEEFI 176 (196) T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 1003388987899999999999999987 No 42 >d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]} Probab=25.38 E-value=5.9 Score=14.89 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=4.5 Q ss_pred EEEECCCCEEECC Q ss_conf 9997375200036 Q gi|254780191|r 512 EVVFDQTPFYAEA 524 (898) Q Consensus 512 ~ivLd~T~FY~E~ 524 (898) ..||+-+.=.-.+ T Consensus 66 T~vl~G~~~H~DS 78 (231) T d1tq5a1 66 TYVLEGTVEHQDS 78 (231) T ss_dssp EEEEESEEEEEES T ss_pred EEEEEEEEEECCC T ss_conf 9987479988877 No 43 >d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]} Probab=24.54 E-value=13 Score=12.34 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=5.1 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 999999999999989 Q gi|254780191|r 627 ITSAELKSIEDNVND 641 (898) Q Consensus 627 lt~eel~~IE~~vN~ 641 (898) .|+|+++++=+.+-+ T Consensus 11 ~s~e~~~~l~~~i~~ 25 (129) T d2aala1 11 RTDAQIKSLLDAAHG 25 (129) T ss_dssp CCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 999999999999999 No 44 >d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS} Probab=24.37 E-value=10 Score=13.02 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=8.8 Q ss_pred CCCCCCEECCCCCCCH Q ss_conf 1115432248987863 Q gi|254780191|r 62 TTVQKCVRAGGKHNDL 77 (898) Q Consensus 62 ~~~QkCiR~ggkhnDl 77 (898) -+.||||-+ |.|+ T Consensus 22 gnpqkciga---hedv 34 (34) T d1ag7a_ 22 GNPQKCIGA---HEDV 34 (34) T ss_dssp SSSCEEEET---TCCC T ss_pred CCCHHCCCC---CCCC T ss_conf 981221354---4669 No 45 >d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=22.46 E-value=11 Score=12.79 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=4.8 Q ss_pred EEEEEECCCC Q ss_conf 3799852458 Q gi|254780191|r 386 VAFKLYDTHG 395 (898) Q Consensus 386 ~af~LyDTyG 395 (898) .||+.||+.+ T Consensus 85 ~~F~~~D~~~ 94 (146) T d1m45a_ 85 KAFQVFDKES 94 (146) T ss_dssp HHHHTTCSSS T ss_pred HHHHHHCCCC T ss_conf 9887401145 No 46 >d1jb0d_ d.187.1.1 (D:) Photosystem I subunit PsaD {Synechococcus elongatus [TaxId: 32046]} Probab=22.25 E-value=11 Score=12.72 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=4.9 Q ss_pred EECCCCCCCEEEEE Q ss_conf 52245655338998 Q gi|254780191|r 543 ITDVQKKAEGIFVH 556 (898) Q Consensus 543 V~dv~k~~~g~i~H 556 (898) |..+...++-.++| T Consensus 82 iYRifp~Ge~~~lh 95 (138) T d1jb0d_ 82 IYRIFPDGETVLIH 95 (138) T ss_dssp EEEECTTCCEEEEE T ss_pred EEEECCCCCEEEEC T ss_conf 99976899558864 No 47 >d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]} Probab=21.96 E-value=14 Score=11.98 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=17.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 9978999999999975499789999953898179999867 Q gi|254780191|r 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 (898) Q Consensus 804 ~d~~~Lr~l~d~l~~k~~~~vvvL~~~~~~~k~~ivv~vs 843 (898) ++.++||++......+...-.-+-+....++.....+-++ T Consensus 4 L~~kelqq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~ 43 (73) T d2dgxa1 4 LSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQME 43 (73) T ss_dssp SCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEES T ss_pred CCHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEEEECC T ss_conf 7989999999999885215899999863689689999848 No 48 >d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=21.77 E-value=14 Score=11.96 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=14.6 Q ss_pred EECCCCHHHHHHHHHHHHHH Q ss_conf 95799978999999999975 Q gi|254780191|r 800 IISEVDSKELKSVMDALQKK 819 (898) Q Consensus 800 ~~~~~d~~~Lr~l~d~l~~k 819 (898) .+..+..++++.++..+... T Consensus 147 ~I~~VT~edi~~vA~kyl~~ 166 (196) T d2fgea2 147 EILTTSLKDFKDFAQAIDVV 166 (196) T ss_dssp HHHTCCHHHHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHCC T ss_conf 99854799999999998442 No 49 >d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Probab=20.95 E-value=10 Score=13.02 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=36.0 Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC---CCCHHHHHHHHHH Q ss_conf 54642457437998524588889999876650774---4358889999999 Q gi|254780191|r 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA---GIDIISFNQALEE 424 (898) Q Consensus 377 ~~~~~lsg~~af~LyDTyGfP~dlt~eia~e~gi~---~vD~~~f~~~m~~ 424 (898) .+.+.|+++++-.+.-+.|+|.+....|-..-... .++.++|..+|.- T Consensus 23 d~~G~i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~L 73 (99) T d1qjta_ 23 GNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRL 73 (99) T ss_dssp TTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 877745599999999982885999999999875799971289999999999 No 50 >d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Probab=20.82 E-value=12 Score=12.48 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=15.0 Q ss_pred ECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 52458888999987665077443588899999 Q gi|254780191|r 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 (898) Q Consensus 391 yDTyGfP~dlt~eia~e~gi~~vD~~~f~~~m 422 (898) -|-||.=...+...++ .|...+=+...+++. T Consensus 27 anAYGhG~~~va~~l~-~g~~~faVa~~~Ea~ 57 (226) T d1rcqa2 27 ADAYGHGAVRCAEALA-AEADGFAVACIEEGL 57 (226) T ss_dssp HHHHTTCHHHHHHHHT-TTCSEEEESSHHHHH T ss_pred ECCCCCCHHHHHHHHH-HCCCHHHHHHHCCHH T ss_conf 3356175999999999-666611355410089 Done!